Query 010179
Match_columns 516
No_of_seqs 238 out of 1597
Neff 5.7
Searched_HMMs 46136
Date Thu Mar 28 21:58:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01042 V-ATPase_V1_A V-type 100.0 1E-138 3E-143 1118.2 46.2 482 20-502 1-483 (591)
2 TIGR01043 ATP_syn_A_arch ATP s 100.0 2E-136 4E-141 1105.8 47.4 477 21-503 1-479 (578)
3 PRK04192 V-type ATP synthase s 100.0 2E-135 5E-140 1098.5 47.3 477 20-503 3-482 (586)
4 PRK14698 V-type ATP synthase s 100.0 2E-121 4E-126 1046.4 45.7 477 20-501 3-911 (1017)
5 COG1155 NtpA Archaeal/vacuolar 100.0 3E-121 7E-126 959.6 34.5 478 21-504 2-482 (588)
6 KOG1352 Vacuolar H+-ATPase V1 100.0 7E-122 2E-126 935.3 25.2 501 2-503 2-503 (618)
7 cd01134 V_A-ATPase_A V/A-type 100.0 1E-116 3E-121 904.2 33.1 369 88-460 1-369 (369)
8 COG1157 FliI Flagellar biosynt 100.0 2E-111 4E-116 873.4 37.1 371 16-500 20-395 (441)
9 TIGR03324 alt_F1F0_F1_al alter 100.0 7E-106 1E-110 859.1 38.7 393 2-504 9-404 (497)
10 PRK09281 F0F1 ATP synthase sub 100.0 2E-104 5E-109 853.4 39.0 392 3-504 10-404 (502)
11 TIGR00962 atpA proton transloc 100.0 4E-104 8E-109 851.5 38.5 393 2-504 8-403 (501)
12 PRK04196 V-type ATP synthase s 100.0 1E-103 2E-108 841.6 40.3 377 19-502 2-392 (460)
13 PRK13343 F0F1 ATP synthase sub 100.0 1E-103 2E-108 845.1 38.5 392 2-503 9-403 (502)
14 PRK09280 F0F1 ATP synthase sub 100.0 2E-103 4E-108 835.9 38.6 368 20-500 2-381 (463)
15 TIGR01041 ATP_syn_B_arch ATP s 100.0 3E-103 6E-108 836.9 39.7 377 20-503 1-391 (458)
16 PRK06936 type III secretion sy 100.0 4E-103 1E-107 829.3 39.2 380 4-500 10-394 (439)
17 PRK08972 fliI flagellum-specif 100.0 1E-102 3E-107 824.3 40.7 380 5-500 14-396 (444)
18 PRK12597 F0F1 ATP synthase sub 100.0 8E-103 2E-107 833.2 37.6 368 20-500 2-380 (461)
19 TIGR01039 atpD ATP synthase, F 100.0 5E-102 1E-106 823.1 37.4 366 21-500 2-380 (461)
20 CHL00059 atpA ATP synthase CF1 100.0 4E-101 9E-106 819.2 40.5 377 18-504 4-383 (485)
21 CHL00060 atpB ATP synthase CF1 100.0 4E-101 9E-106 820.6 39.2 376 18-500 13-405 (494)
22 PRK08927 fliI flagellum-specif 100.0 3E-100 6E-105 808.5 39.1 375 16-500 13-392 (442)
23 TIGR03305 alt_F1F0_F1_bet alte 100.0 3E-100 8E-105 809.2 39.2 366 22-500 1-375 (449)
24 TIGR01040 V-ATPase_V1_B V-type 100.0 1E-99 2E-104 803.4 37.5 377 20-502 1-399 (466)
25 PRK06820 type III secretion sy 100.0 3.2E-99 7E-104 801.6 39.2 383 3-500 11-395 (440)
26 PRK02118 V-type ATP synthase s 100.0 7.2E-99 2E-103 795.1 38.6 367 19-503 3-373 (436)
27 PRK09099 type III secretion sy 100.0 3E-98 6E-103 795.0 39.8 370 16-499 20-394 (441)
28 PRK05688 fliI flagellum-specif 100.0 2.3E-98 5E-103 795.7 38.8 372 16-499 23-401 (451)
29 PRK07165 F0F1 ATP synthase sub 100.0 2.1E-98 5E-103 801.0 38.6 374 22-504 3-380 (507)
30 PTZ00185 ATPase alpha subunit; 100.0 2.6E-97 6E-102 788.4 40.5 385 18-504 37-439 (574)
31 TIGR03496 FliI_clade1 flagella 100.0 2.7E-97 6E-102 783.9 40.0 366 22-499 1-370 (411)
32 PRK07594 type III secretion sy 100.0 3E-97 6E-102 785.2 40.2 375 11-500 12-387 (433)
33 TIGR03498 FliI_clade3 flagella 100.0 4.5E-97 1E-101 782.7 38.8 369 22-500 1-374 (418)
34 PRK08472 fliI flagellum-specif 100.0 7.1E-97 2E-101 782.5 38.1 371 16-500 14-389 (434)
35 TIGR03497 FliI_clade2 flagella 100.0 2.5E-96 6E-101 776.9 38.7 364 22-499 1-368 (413)
36 PRK07960 fliI flagellum-specif 100.0 1.7E-96 4E-101 779.6 37.0 373 16-500 23-409 (455)
37 PRK08149 ATP synthase SpaL; Va 100.0 4.4E-96 1E-100 775.3 39.1 374 18-501 4-384 (428)
38 PRK05922 type III secretion sy 100.0 1E-95 2E-100 773.0 38.7 368 18-501 17-388 (434)
39 PRK07196 fliI flagellum-specif 100.0 6.6E-94 1.4E-98 759.9 38.0 379 9-500 6-388 (434)
40 TIGR02546 III_secr_ATP type II 100.0 3.7E-93 8.1E-98 755.8 39.7 371 18-500 3-377 (422)
41 PRK06002 fliI flagellum-specif 100.0 2.8E-93 6E-98 755.9 37.3 383 5-499 10-397 (450)
42 TIGR01026 fliI_yscN ATPase Fli 100.0 1.9E-92 4.1E-97 752.6 39.1 373 16-501 19-396 (440)
43 PRK06793 fliI flagellum-specif 100.0 1.4E-89 3.1E-94 726.5 37.1 379 10-503 11-390 (432)
44 PRK07721 fliI flagellum-specif 100.0 2E-88 4.4E-93 721.4 37.7 371 16-500 14-390 (438)
45 PRK06315 type III secretion sy 100.0 5.3E-88 1.2E-92 716.2 34.4 374 16-500 19-397 (442)
46 cd01135 V_A-ATPase_B V/A-type 100.0 4.5E-87 9.7E-92 670.0 25.1 236 210-460 33-276 (276)
47 cd01133 F1-ATPase_beta F1 ATP 100.0 8.6E-86 1.9E-90 661.6 24.8 237 209-462 32-273 (274)
48 cd01132 F1_ATPase_alpha F1 ATP 100.0 3.1E-85 6.7E-90 656.7 25.9 238 210-460 33-273 (274)
49 COG0056 AtpA F0F1-type ATP syn 100.0 4.5E-85 9.8E-90 677.5 27.5 395 1-505 8-405 (504)
50 COG0055 AtpD F0F1-type ATP syn 100.0 1.6E-84 3.5E-89 661.6 26.1 374 20-503 2-388 (468)
51 cd01136 ATPase_flagellum-secre 100.0 2.6E-82 5.6E-87 651.4 28.1 268 210-500 33-301 (326)
52 KOG1350 F0F1-type ATP synthase 100.0 4.5E-73 9.9E-78 567.0 16.3 379 18-503 49-438 (521)
53 COG1156 NtpB Archaeal/vacuolar 100.0 3.6E-71 7.7E-76 568.3 25.5 382 18-504 4-397 (463)
54 PF00006 ATP-synt_ab: ATP synt 100.0 2.5E-70 5.5E-75 534.3 18.6 215 231-458 1-215 (215)
55 PRK12608 transcription termina 100.0 5.7E-69 1.2E-73 558.3 24.5 299 73-497 56-360 (380)
56 KOG1351 Vacuolar H+-ATPase V1 100.0 5.7E-63 1.2E-67 490.4 25.7 391 7-505 11-424 (489)
57 PRK09376 rho transcription ter 100.0 1.4E-62 2.9E-67 511.9 24.8 273 192-495 112-394 (416)
58 PRK12678 transcription termina 100.0 1.1E-61 2.4E-66 520.2 23.3 264 192-494 360-640 (672)
59 TIGR00767 rho transcription te 100.0 9.2E-57 2E-61 470.0 22.5 238 228-495 151-393 (415)
60 cd01128 rho_factor Transcripti 100.0 1.2E-53 2.6E-58 425.6 22.9 236 232-497 3-243 (249)
61 COG1158 Rho Transcription term 100.0 1.9E-43 4.1E-48 356.7 16.4 232 232-493 160-396 (422)
62 KOG1353 F0F1-type ATP synthase 100.0 2.5E-38 5.4E-43 309.1 8.6 297 1-507 1-307 (340)
63 cd01120 RecA-like_NTPases RecA 99.1 2.3E-09 5E-14 96.6 15.4 158 248-440 2-165 (165)
64 PF02874 ATP-synt_ab_N: ATP sy 98.9 1E-08 2.2E-13 82.6 8.4 63 24-86 1-69 (69)
65 COG2256 MGS1 ATPase related to 98.4 9.8E-07 2.1E-11 93.2 8.2 103 218-364 13-123 (436)
66 cd01394 radB RadB. The archaea 98.1 2.8E-05 6E-10 75.5 12.0 179 229-442 1-188 (218)
67 PF06745 KaiC: KaiC; InterPro 98.0 8.9E-06 1.9E-10 79.5 7.0 177 230-441 2-186 (226)
68 COG0467 RAD55 RecA-superfamily 97.9 0.00014 2.9E-09 73.0 12.3 186 227-444 3-197 (260)
69 PRK09302 circadian clock prote 97.9 0.00013 2.9E-09 80.2 13.1 178 225-442 251-436 (509)
70 smart00382 AAA ATPases associa 97.9 3.6E-05 7.9E-10 66.0 6.5 96 244-364 1-97 (148)
71 PRK06067 flagellar accessory p 97.8 0.00017 3.7E-09 71.0 11.2 67 227-293 5-75 (234)
72 cd01123 Rad51_DMC1_radA Rad51_ 97.8 0.00017 3.6E-09 70.6 10.5 117 229-359 1-129 (235)
73 TIGR03878 thermo_KaiC_2 KaiC d 97.8 0.00034 7.3E-09 70.6 12.8 57 229-285 4-78 (259)
74 TIGR03877 thermo_KaiC_1 KaiC d 97.7 0.00069 1.5E-08 67.2 13.2 65 229-293 3-71 (237)
75 TIGR02236 recomb_radA DNA repa 97.7 0.00016 3.4E-09 74.5 8.7 119 227-359 75-206 (310)
76 PRK04328 hypothetical protein; 97.6 0.00093 2E-08 67.0 13.2 66 228-293 4-73 (249)
77 PRK09361 radB DNA repair and r 97.6 0.0017 3.8E-08 63.3 14.7 55 226-280 2-60 (225)
78 KOG2028 ATPase related to the 97.6 0.00017 3.6E-09 75.9 7.8 111 209-364 119-241 (554)
79 cd01393 recA_like RecA is a b 97.6 0.00041 8.9E-09 67.4 9.9 40 229-268 1-42 (226)
80 COG1155 NtpA Archaeal/vacuolar 97.5 0.00019 4.1E-09 78.1 7.7 182 316-497 288-470 (588)
81 TIGR02655 circ_KaiC circadian 97.5 0.00062 1.3E-08 74.7 11.9 191 224-456 240-440 (484)
82 TIGR03881 KaiC_arch_4 KaiC dom 97.5 0.00081 1.8E-08 65.7 11.4 64 229-292 2-69 (229)
83 PF05496 RuvB_N: Holliday junc 97.5 0.00013 2.8E-09 72.6 5.6 67 248-364 53-120 (233)
84 TIGR02237 recomb_radB DNA repa 97.4 0.0022 4.9E-08 61.7 12.6 102 242-361 9-113 (209)
85 TIGR02238 recomb_DMC1 meiotic 97.4 0.00077 1.7E-08 70.1 9.9 119 226-359 75-205 (313)
86 PLN03187 meiotic recombination 97.4 0.0008 1.7E-08 70.9 9.6 121 225-360 104-236 (344)
87 PRK09354 recA recombinase A; P 97.3 0.00098 2.1E-08 70.3 10.0 119 226-369 38-161 (349)
88 PRK09302 circadian clock prote 97.3 0.0015 3.2E-08 72.0 11.0 67 227-293 11-82 (509)
89 TIGR03880 KaiC_arch_3 KaiC dom 97.3 0.0056 1.2E-07 59.8 13.6 62 232-293 1-66 (224)
90 TIGR00416 sms DNA repair prote 97.2 0.0026 5.5E-08 69.5 12.1 61 227-287 74-138 (454)
91 PTZ00035 Rad51 protein; Provis 97.2 0.0011 2.4E-08 69.6 8.8 121 224-359 95-227 (337)
92 TIGR02012 tigrfam_recA protein 97.2 0.00083 1.8E-08 70.2 7.6 109 227-359 34-147 (321)
93 PRK08533 flagellar accessory p 97.2 0.0062 1.3E-07 60.5 12.9 63 231-293 8-74 (230)
94 cd01124 KaiC KaiC is a circadi 97.1 0.0065 1.4E-07 56.8 11.9 46 248-293 2-49 (187)
95 PRK04301 radA DNA repair and r 97.1 0.0027 5.8E-08 65.8 10.0 119 227-360 82-213 (317)
96 PRK13342 recombination factor 97.1 0.0021 4.6E-08 69.0 9.5 74 246-363 37-110 (413)
97 cd01121 Sms Sms (bacterial rad 97.1 0.0086 1.9E-07 63.8 13.6 62 226-287 61-126 (372)
98 cd00983 recA RecA is a bacter 97.0 0.0011 2.4E-08 69.3 6.5 110 226-359 33-147 (325)
99 TIGR02655 circ_KaiC circadian 97.0 0.003 6.5E-08 69.4 9.5 66 228-293 2-72 (484)
100 PF00004 AAA: ATPase family as 97.0 0.0075 1.6E-07 52.7 10.1 108 248-415 1-111 (132)
101 PRK11823 DNA repair protein Ra 97.0 0.012 2.6E-07 64.1 13.8 65 227-291 60-128 (446)
102 PLN03186 DNA repair protein RA 96.9 0.0037 8.1E-08 65.9 9.2 119 227-360 103-233 (342)
103 TIGR02239 recomb_RAD51 DNA rep 96.8 0.0047 1E-07 64.3 8.9 118 227-359 76-205 (316)
104 PF08423 Rad51: Rad51; InterP 96.5 0.0088 1.9E-07 60.4 8.4 121 226-361 17-149 (256)
105 cd00009 AAA The AAA+ (ATPases 96.5 0.022 4.8E-07 49.3 9.6 26 244-269 18-43 (151)
106 cd01122 GP4d_helicase GP4d_hel 96.4 0.022 4.7E-07 57.1 10.5 66 226-291 10-79 (271)
107 PRK09519 recA DNA recombinatio 96.4 0.0073 1.6E-07 69.8 7.8 108 227-358 39-151 (790)
108 PRK13341 recombination factor 96.1 0.01 2.2E-07 68.4 6.4 32 240-271 47-78 (725)
109 COG1124 DppF ABC-type dipeptid 95.9 0.005 1.1E-07 61.8 2.8 33 239-271 27-59 (252)
110 PF13173 AAA_14: AAA domain 95.8 0.013 2.9E-07 52.3 4.9 24 246-269 3-26 (128)
111 COG1116 TauB ABC-type nitrate/ 95.6 0.0057 1.2E-07 61.6 1.7 32 238-269 22-53 (248)
112 PLN00020 ribulose bisphosphate 95.5 0.026 5.7E-07 60.3 6.3 28 248-275 151-178 (413)
113 COG2874 FlaH Predicted ATPases 95.4 0.19 4E-06 50.1 11.3 159 245-441 28-191 (235)
114 cd00544 CobU Adenosylcobinamid 95.4 0.044 9.6E-07 52.1 6.8 88 248-363 2-91 (169)
115 TIGR00635 ruvB Holliday juncti 95.3 0.026 5.6E-07 57.5 5.4 28 246-273 31-58 (305)
116 COG2255 RuvB Holliday junction 95.3 0.019 4.2E-07 59.1 4.3 43 248-290 55-98 (332)
117 cd03222 ABC_RNaseL_inhibitor T 95.3 0.0097 2.1E-07 57.0 2.1 35 236-270 16-50 (177)
118 PF00154 RecA: recA bacterial 95.3 0.018 3.9E-07 60.3 4.2 119 227-370 32-155 (322)
119 PRK05973 replicative DNA helic 95.2 0.085 1.8E-06 53.0 8.8 53 241-293 60-114 (237)
120 TIGR01166 cbiO cobalt transpor 95.2 0.011 2.3E-07 56.3 2.2 33 239-271 12-44 (190)
121 cd03254 ABCC_Glucan_exporter_l 95.2 0.011 2.3E-07 57.8 2.2 32 239-270 23-54 (229)
122 PRK14956 DNA polymerase III su 95.1 0.046 9.9E-07 60.2 7.0 107 247-373 42-150 (484)
123 cd03292 ABC_FtsE_transporter F 95.1 0.011 2.5E-07 56.9 2.2 33 239-271 21-53 (214)
124 cd03229 ABC_Class3 This class 95.1 0.012 2.6E-07 55.5 2.1 31 240-270 21-51 (178)
125 cd03225 ABC_cobalt_CbiO_domain 95.0 0.013 2.7E-07 56.6 2.1 32 239-270 21-52 (211)
126 COG4619 ABC-type uncharacteriz 95.0 0.018 3.8E-07 55.5 2.9 34 240-273 24-57 (223)
127 TIGR02211 LolD_lipo_ex lipopro 95.0 0.013 2.9E-07 56.8 2.2 32 239-270 25-56 (221)
128 PRK14957 DNA polymerase III su 95.0 0.07 1.5E-06 59.7 8.0 106 248-373 41-148 (546)
129 cd03226 ABC_cobalt_CbiO_domain 94.9 0.014 2.9E-07 56.2 2.1 31 240-270 21-51 (205)
130 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.9 0.014 3.1E-07 56.5 2.1 32 240-271 25-56 (218)
131 cd03258 ABC_MetN_methionine_tr 94.9 0.014 3.1E-07 57.1 2.2 31 240-270 26-56 (233)
132 TIGR02315 ABC_phnC phosphonate 94.9 0.015 3.1E-07 57.4 2.2 32 239-270 22-53 (243)
133 cd03265 ABC_DrrA DrrA is the A 94.9 0.015 3.2E-07 56.6 2.2 35 237-271 18-52 (220)
134 PRK13540 cytochrome c biogenes 94.9 0.015 3.3E-07 55.8 2.3 33 239-271 21-53 (200)
135 cd03269 ABC_putative_ATPase Th 94.9 0.015 3.3E-07 56.0 2.2 32 239-270 20-51 (210)
136 cd03216 ABC_Carb_Monos_I This 94.9 0.015 3.3E-07 54.3 2.1 32 240-271 21-52 (163)
137 cd03250 ABCC_MRP_domain1 Domai 94.8 0.015 3.3E-07 55.8 2.1 32 239-270 25-56 (204)
138 PF13401 AAA_22: AAA domain; P 94.8 0.024 5.3E-07 49.7 3.2 25 245-269 4-28 (131)
139 PRK11124 artP arginine transpo 94.8 0.016 3.4E-07 57.2 2.3 32 239-270 22-53 (242)
140 cd03257 ABC_NikE_OppD_transpor 94.8 0.016 3.4E-07 56.4 2.2 32 239-270 25-56 (228)
141 TIGR03608 L_ocin_972_ABC putat 94.8 0.016 3.4E-07 55.5 2.2 32 239-270 18-49 (206)
142 cd03235 ABC_Metallic_Cations A 94.8 0.016 3.4E-07 56.1 2.1 31 240-270 20-50 (213)
143 TIGR03410 urea_trans_UrtE urea 94.8 0.016 3.5E-07 56.6 2.2 33 238-270 19-51 (230)
144 TIGR00960 3a0501s02 Type II (G 94.8 0.016 3.6E-07 56.0 2.2 32 239-270 23-54 (216)
145 cd03262 ABC_HisP_GlnQ_permease 94.8 0.017 3.7E-07 55.6 2.3 31 240-270 21-51 (213)
146 cd03261 ABC_Org_Solvent_Resist 94.8 0.017 3.6E-07 56.8 2.2 32 239-270 20-51 (235)
147 cd03260 ABC_PstB_phosphate_tra 94.8 0.016 3.5E-07 56.5 2.1 31 239-269 20-50 (227)
148 cd03224 ABC_TM1139_LivF_branch 94.8 0.016 3.4E-07 56.3 2.0 32 239-270 20-51 (222)
149 cd03230 ABC_DR_subfamily_A Thi 94.8 0.017 3.6E-07 54.3 2.1 32 239-270 20-51 (173)
150 cd03256 ABC_PhnC_transporter A 94.8 0.017 3.6E-07 56.8 2.2 31 239-269 21-51 (241)
151 PRK00080 ruvB Holliday junctio 94.7 0.047 1E-06 56.7 5.6 28 246-273 52-79 (328)
152 PF05729 NACHT: NACHT domain 94.7 0.057 1.2E-06 48.7 5.5 37 248-284 3-47 (166)
153 COG3842 PotA ABC-type spermidi 94.7 0.017 3.8E-07 61.1 2.2 37 233-269 18-55 (352)
154 cd00820 PEPCK_HprK Phosphoenol 94.7 0.014 3.1E-07 51.7 1.3 28 239-266 9-36 (107)
155 cd03296 ABC_CysA_sulfate_impor 94.7 0.018 3.9E-07 56.8 2.2 32 239-270 22-53 (239)
156 cd03298 ABC_ThiQ_thiamine_tran 94.7 0.019 4E-07 55.5 2.2 34 237-270 16-49 (211)
157 cd03259 ABC_Carb_Solutes_like 94.7 0.019 4E-07 55.5 2.2 32 239-270 20-51 (213)
158 TIGR03864 PQQ_ABC_ATP ABC tran 94.6 0.018 4E-07 56.6 2.2 31 240-270 22-52 (236)
159 cd03218 ABC_YhbG The ABC trans 94.6 0.019 4.1E-07 56.2 2.2 32 239-270 20-51 (232)
160 cd03245 ABCC_bacteriocin_expor 94.6 0.019 4.1E-07 55.7 2.2 32 239-270 24-55 (220)
161 PRK13539 cytochrome c biogenes 94.6 0.019 4.1E-07 55.5 2.2 32 239-270 22-53 (207)
162 cd03247 ABCC_cytochrome_bd The 94.6 0.019 4.2E-07 54.1 2.2 33 238-270 21-53 (178)
163 PRK13541 cytochrome c biogenes 94.6 0.019 4.1E-07 54.9 2.1 34 237-270 18-51 (195)
164 cd03215 ABC_Carb_Monos_II This 94.6 0.019 4.2E-07 54.3 2.1 32 239-270 20-51 (182)
165 cd03301 ABC_MalK_N The N-termi 94.6 0.019 4.2E-07 55.3 2.2 32 239-270 20-51 (213)
166 PTZ00454 26S protease regulato 94.6 0.26 5.6E-06 53.2 10.9 28 246-273 180-207 (398)
167 PRK10895 lipopolysaccharide AB 94.6 0.019 4.2E-07 56.6 2.2 32 239-270 23-54 (241)
168 cd03295 ABC_OpuCA_Osmoprotecti 94.6 0.019 4.1E-07 56.7 2.1 32 239-270 21-52 (242)
169 TIGR02673 FtsE cell division A 94.6 0.02 4.3E-07 55.3 2.2 31 240-270 23-53 (214)
170 cd03231 ABC_CcmA_heme_exporter 94.6 0.02 4.3E-07 55.1 2.2 34 237-270 18-51 (201)
171 PRK10584 putative ABC transpor 94.6 0.02 4.4E-07 55.9 2.2 33 239-271 30-62 (228)
172 cd03219 ABC_Mj1267_LivG_branch 94.6 0.019 4.2E-07 56.2 2.1 32 239-270 20-51 (236)
173 PRK14962 DNA polymerase III su 94.5 0.092 2E-06 57.8 7.5 23 248-270 39-61 (472)
174 PF13521 AAA_28: AAA domain; P 94.5 0.02 4.3E-07 53.1 2.0 36 247-288 1-36 (163)
175 PF00005 ABC_tran: ABC transpo 94.5 0.015 3.3E-07 51.7 1.2 32 240-271 6-37 (137)
176 cd03223 ABCD_peroxisomal_ALDP 94.5 0.022 4.7E-07 53.4 2.2 32 239-270 21-52 (166)
177 PRK15177 Vi polysaccharide exp 94.5 0.021 4.5E-07 55.8 2.1 31 239-269 7-37 (213)
178 PRK14250 phosphate ABC transpo 94.5 0.021 4.6E-07 56.5 2.2 34 237-270 21-54 (241)
179 PRK11701 phnK phosphonate C-P 94.5 0.021 4.5E-07 57.1 2.2 33 238-270 25-57 (258)
180 PRK11248 tauB taurine transpor 94.5 0.021 4.6E-07 57.2 2.2 31 239-269 21-51 (255)
181 cd03214 ABC_Iron-Siderophores_ 94.5 0.022 4.7E-07 53.9 2.1 32 239-270 19-50 (180)
182 cd03266 ABC_NatA_sodium_export 94.5 0.021 4.6E-07 55.2 2.1 31 239-269 25-55 (218)
183 cd03246 ABCC_Protease_Secretio 94.5 0.022 4.8E-07 53.5 2.2 32 239-270 22-53 (173)
184 cd03293 ABC_NrtD_SsuB_transpor 94.5 0.021 4.6E-07 55.5 2.1 31 239-269 24-54 (220)
185 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.5 0.021 4.5E-07 56.2 2.0 32 238-269 22-53 (238)
186 PRK14247 phosphate ABC transpo 94.5 0.018 4E-07 57.0 1.7 31 239-269 23-53 (250)
187 PRK10575 iron-hydroxamate tran 94.4 0.021 4.5E-07 57.4 2.1 32 239-270 31-62 (265)
188 PRK11264 putative amino-acid A 94.4 0.022 4.8E-07 56.4 2.2 32 239-270 23-54 (250)
189 TIGR02881 spore_V_K stage V sp 94.4 0.19 4.1E-06 50.6 8.9 26 243-268 40-65 (261)
190 cd03263 ABC_subfamily_A The AB 94.4 0.023 4.9E-07 55.1 2.2 32 239-270 22-53 (220)
191 TIGR01978 sufC FeS assembly AT 94.4 0.019 4.2E-07 56.4 1.7 30 239-268 20-49 (243)
192 PRK09493 glnQ glutamine ABC tr 94.4 0.023 4.9E-07 56.1 2.1 32 239-270 21-52 (240)
193 PRK14267 phosphate ABC transpo 94.4 0.02 4.3E-07 56.9 1.7 31 239-269 24-54 (253)
194 cd03252 ABCC_Hemolysin The ABC 94.4 0.023 5E-07 55.8 2.1 31 239-269 22-52 (237)
195 cd03238 ABC_UvrA The excision 94.4 0.02 4.4E-07 54.7 1.6 28 239-266 15-42 (176)
196 PRK14964 DNA polymerase III su 94.3 0.094 2E-06 58.0 7.0 23 246-268 36-58 (491)
197 cd03268 ABC_BcrA_bacitracin_re 94.3 0.024 5.2E-07 54.6 2.2 32 239-270 20-51 (208)
198 TIGR01184 ntrCD nitrate transp 94.3 0.024 5.2E-07 55.8 2.2 32 239-270 5-36 (230)
199 PRK15056 manganese/iron transp 94.3 0.023 5.1E-07 57.4 2.1 35 237-271 25-59 (272)
200 TIGR03005 ectoine_ehuA ectoine 94.3 0.024 5.2E-07 56.3 2.2 32 239-270 20-51 (252)
201 PRK14960 DNA polymerase III su 94.3 0.093 2E-06 59.9 7.0 107 247-373 39-147 (702)
202 cd03236 ABC_RNaseL_inhibitor_d 94.3 0.025 5.4E-07 57.0 2.3 31 241-271 22-52 (255)
203 PRK10247 putative ABC transpor 94.3 0.025 5.3E-07 55.5 2.2 31 239-269 27-57 (225)
204 PRK10908 cell division protein 94.3 0.025 5.5E-07 55.0 2.2 32 240-271 23-54 (222)
205 cd03290 ABCC_SUR1_N The SUR do 94.3 0.024 5.3E-07 55.0 2.1 31 240-270 22-52 (218)
206 TIGR03411 urea_trans_UrtD urea 94.3 0.025 5.4E-07 55.8 2.2 31 239-269 22-52 (242)
207 COG3839 MalK ABC-type sugar tr 94.3 0.021 4.6E-07 60.1 1.7 31 238-268 22-52 (338)
208 cd03251 ABCC_MsbA MsbA is an e 94.3 0.025 5.4E-07 55.4 2.1 31 239-269 22-52 (234)
209 PRK14240 phosphate transporter 94.3 0.022 4.7E-07 56.6 1.7 32 237-268 21-52 (250)
210 PF13207 AAA_17: AAA domain; P 94.3 0.021 4.5E-07 49.7 1.4 24 247-270 1-24 (121)
211 PRK14274 phosphate ABC transpo 94.2 0.022 4.8E-07 56.9 1.7 31 239-269 32-62 (259)
212 PRK11629 lolD lipoprotein tran 94.2 0.026 5.6E-07 55.5 2.2 32 239-270 29-60 (233)
213 PRK11247 ssuB aliphatic sulfon 94.2 0.025 5.5E-07 57.0 2.2 32 239-270 32-63 (257)
214 TIGR02323 CP_lyasePhnK phospho 94.2 0.026 5.6E-07 56.1 2.2 33 239-271 23-55 (253)
215 cd03267 ABC_NatA_like Similar 94.2 0.026 5.5E-07 55.8 2.1 32 239-270 41-72 (236)
216 PRK10851 sulfate/thiosulfate t 94.2 0.025 5.4E-07 59.8 2.2 33 238-270 21-53 (353)
217 PRK10253 iron-enterobactin tra 94.2 0.025 5.5E-07 56.8 2.1 31 240-270 28-58 (265)
218 PRK08118 topology modulation p 94.2 0.024 5.3E-07 53.5 1.8 26 246-271 2-27 (167)
219 TIGR01188 drrA daunorubicin re 94.2 0.026 5.6E-07 58.0 2.2 33 239-271 13-45 (302)
220 PRK14255 phosphate ABC transpo 94.2 0.023 4.9E-07 56.5 1.7 29 240-268 26-54 (252)
221 PRK13648 cbiO cobalt transport 94.2 0.026 5.7E-07 56.8 2.2 34 237-270 27-60 (269)
222 PRK10771 thiQ thiamine transpo 94.2 0.027 5.7E-07 55.3 2.1 34 237-270 17-50 (232)
223 PRK13538 cytochrome c biogenes 94.2 0.028 6E-07 54.2 2.2 34 237-270 19-52 (204)
224 TIGR03771 anch_rpt_ABC anchore 94.2 0.027 5.9E-07 55.2 2.1 30 241-270 2-31 (223)
225 TIGR03740 galliderm_ABC gallid 94.2 0.027 5.9E-07 54.9 2.2 31 240-270 21-51 (223)
226 COG3638 ABC-type phosphate/pho 94.2 0.051 1.1E-06 54.7 4.0 54 239-292 24-82 (258)
227 PRK11831 putative ABC transpor 94.2 0.027 5.8E-07 56.8 2.2 33 238-270 26-58 (269)
228 TIGR02770 nickel_nikD nickel i 94.2 0.027 5.9E-07 55.2 2.2 32 239-270 6-37 (230)
229 COG1484 DnaC DNA replication p 94.1 0.063 1.4E-06 54.3 4.8 26 244-269 104-129 (254)
230 PRK07994 DNA polymerase III su 94.1 0.07 1.5E-06 60.8 5.6 106 249-374 42-149 (647)
231 PRK13649 cbiO cobalt transport 94.1 0.027 5.8E-07 57.0 2.1 33 239-271 27-59 (280)
232 PRK13543 cytochrome c biogenes 94.1 0.028 6.1E-07 54.6 2.2 31 239-269 31-61 (214)
233 TIGR02324 CP_lyasePhnL phospho 94.1 0.029 6.2E-07 54.7 2.2 32 239-270 28-59 (224)
234 TIGR03015 pepcterm_ATPase puta 94.1 0.2 4.3E-06 49.8 8.3 25 246-270 44-68 (269)
235 PRK13632 cbiO cobalt transport 94.1 0.028 6.1E-07 56.8 2.2 31 240-270 30-60 (271)
236 COG0468 RecA RecA/RadA recombi 94.1 0.15 3.3E-06 52.5 7.5 111 226-361 39-157 (279)
237 PRK09544 znuC high-affinity zi 94.1 0.028 6E-07 56.4 2.1 31 239-269 24-54 (251)
238 cd03369 ABCC_NFT1 Domain 2 of 94.1 0.03 6.5E-07 53.9 2.2 31 239-269 28-58 (207)
239 PRK14242 phosphate transporter 94.1 0.025 5.4E-07 56.2 1.7 29 240-268 27-55 (253)
240 PRK11144 modC molybdate transp 94.1 0.03 6.4E-07 59.1 2.3 35 236-270 15-49 (352)
241 PRK14262 phosphate ABC transpo 94.1 0.025 5.3E-07 56.1 1.6 30 239-268 23-52 (250)
242 PRK13645 cbiO cobalt transport 94.1 0.028 6.1E-07 57.3 2.1 32 239-270 31-62 (289)
243 PRK13638 cbiO cobalt transport 94.0 0.029 6.2E-07 56.6 2.1 32 239-270 21-52 (271)
244 COG1134 TagH ABC-type polysacc 94.0 0.029 6.3E-07 56.5 2.1 33 237-269 45-77 (249)
245 PRK14273 phosphate ABC transpo 94.0 0.026 5.6E-07 56.2 1.7 32 239-270 27-58 (254)
246 PF04665 Pox_A32: Poxvirus A32 94.0 0.12 2.5E-06 52.2 6.4 44 247-290 15-59 (241)
247 PRK11650 ugpC glycerol-3-phosp 94.0 0.029 6.3E-07 59.4 2.1 34 238-271 23-56 (356)
248 TIGR01288 nodI ATP-binding ABC 94.0 0.03 6.4E-07 57.6 2.2 32 239-270 24-55 (303)
249 PRK13641 cbiO cobalt transport 94.0 0.03 6.4E-07 57.2 2.1 33 239-271 27-59 (287)
250 PRK14241 phosphate transporter 94.0 0.025 5.5E-07 56.4 1.6 31 239-269 24-54 (258)
251 cd03228 ABCC_MRP_Like The MRP 94.0 0.032 6.9E-07 52.3 2.2 31 240-270 23-53 (171)
252 cd03217 ABC_FeS_Assembly ABC-t 94.0 0.027 5.8E-07 54.2 1.7 30 239-268 20-49 (200)
253 PRK14248 phosphate ABC transpo 94.0 0.027 5.8E-07 56.7 1.7 29 240-268 42-70 (268)
254 cd03264 ABC_drug_resistance_li 94.0 0.032 6.8E-07 53.9 2.1 30 239-269 20-49 (211)
255 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.0 0.032 6.9E-07 51.2 2.0 32 240-271 21-52 (144)
256 TIGR03265 PhnT2 putative 2-ami 94.0 0.03 6.6E-07 59.2 2.2 33 238-270 23-55 (353)
257 TIGR02769 nickel_nikE nickel i 93.9 0.032 6.9E-07 56.1 2.2 34 237-270 29-62 (265)
258 PRK11432 fbpC ferric transport 93.9 0.031 6.6E-07 59.1 2.2 33 238-270 25-57 (351)
259 PRK15093 antimicrobial peptide 93.9 0.027 5.8E-07 58.8 1.7 31 239-269 27-57 (330)
260 PRK03992 proteasome-activating 93.9 0.38 8.2E-06 51.6 10.5 26 248-273 168-193 (389)
261 cd03253 ABCC_ATM1_transporter 93.9 0.032 7E-07 54.7 2.2 34 237-270 19-52 (236)
262 PF13191 AAA_16: AAA ATPase do 93.9 0.088 1.9E-06 48.7 5.0 44 239-282 18-63 (185)
263 cd03248 ABCC_TAP TAP, the Tran 93.9 0.033 7.2E-07 54.3 2.2 31 240-270 35-65 (226)
264 PRK11300 livG leucine/isoleuci 93.9 0.03 6.5E-07 55.6 2.0 32 239-270 25-56 (255)
265 PRK13548 hmuV hemin importer A 93.9 0.032 6.8E-07 56.0 2.1 30 240-269 23-52 (258)
266 PRK07261 topology modulation p 93.9 0.033 7.2E-07 52.6 2.1 24 246-269 1-24 (171)
267 PRK14239 phosphate transporter 93.9 0.028 6.1E-07 55.7 1.7 30 239-268 25-54 (252)
268 TIGR00972 3a0107s01c2 phosphat 93.9 0.033 7.1E-07 55.2 2.2 31 239-269 21-51 (247)
269 PRK12377 putative replication 93.9 0.097 2.1E-06 52.9 5.5 24 246-269 102-125 (248)
270 PF13481 AAA_25: AAA domain; P 93.9 0.11 2.4E-06 48.9 5.7 50 243-292 30-91 (193)
271 cd03233 ABC_PDR_domain1 The pl 93.9 0.027 5.9E-07 54.4 1.5 32 239-270 27-58 (202)
272 cd03213 ABCG_EPDR ABCG transpo 93.9 0.034 7.4E-07 53.3 2.2 31 239-269 29-59 (194)
273 PRK13646 cbiO cobalt transport 93.9 0.033 7.1E-07 56.8 2.1 32 239-270 27-58 (286)
274 TIGR01277 thiQ thiamine ABC tr 93.9 0.034 7.3E-07 53.9 2.1 34 237-270 16-49 (213)
275 PF13671 AAA_33: AAA domain; P 93.8 0.67 1.5E-05 41.2 10.4 23 248-270 2-24 (143)
276 PRK10619 histidine/lysine/argi 93.8 0.033 7.2E-07 55.6 2.1 32 239-270 25-56 (257)
277 PRK14237 phosphate transporter 93.8 0.029 6.4E-07 56.5 1.7 31 239-269 40-70 (267)
278 PRK14266 phosphate ABC transpo 93.8 0.03 6.5E-07 55.5 1.7 31 238-268 22-52 (250)
279 TIGR01189 ccmA heme ABC export 93.8 0.035 7.7E-07 53.1 2.2 33 238-270 19-51 (198)
280 PRK08181 transposase; Validate 93.8 0.061 1.3E-06 54.9 4.0 27 243-269 104-130 (269)
281 TIGR00968 3a0106s01 sulfate AB 93.8 0.035 7.6E-07 54.8 2.1 30 240-269 21-50 (237)
282 PRK14256 phosphate ABC transpo 93.8 0.031 6.8E-07 55.5 1.8 30 240-269 25-54 (252)
283 PRK14246 phosphate ABC transpo 93.8 0.035 7.6E-07 55.7 2.1 32 239-270 30-61 (257)
284 cd03300 ABC_PotA_N PotA is an 93.8 0.037 8E-07 54.4 2.2 33 239-271 20-52 (232)
285 PRK14245 phosphate ABC transpo 93.7 0.031 6.7E-07 55.5 1.6 29 239-267 23-51 (250)
286 PRK10419 nikE nickel transport 93.7 0.037 8E-07 55.9 2.2 33 238-270 31-63 (268)
287 PRK10744 pstB phosphate transp 93.7 0.031 6.7E-07 56.0 1.7 31 239-269 33-63 (260)
288 CHL00131 ycf16 sulfate ABC tra 93.7 0.03 6.4E-07 55.5 1.5 29 240-268 28-56 (252)
289 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 93.7 0.037 8.1E-07 54.3 2.2 32 239-270 42-73 (224)
290 PRK14949 DNA polymerase III su 93.7 0.15 3.2E-06 60.0 7.2 105 248-374 41-149 (944)
291 PRK10418 nikD nickel transport 93.7 0.038 8.2E-07 55.2 2.2 33 238-270 22-54 (254)
292 PRK09984 phosphonate/organopho 93.7 0.038 8.2E-07 55.3 2.2 32 239-270 24-55 (262)
293 cd03115 SRP The signal recogni 93.7 0.58 1.3E-05 43.6 10.0 44 248-291 3-48 (173)
294 cd03294 ABC_Pro_Gly_Bertaine T 93.6 0.039 8.5E-07 55.7 2.2 32 239-270 44-75 (269)
295 cd03237 ABC_RNaseL_inhibitor_d 93.6 0.038 8.3E-07 55.3 2.1 29 241-269 21-49 (246)
296 PRK11614 livF leucine/isoleuci 93.6 0.037 8E-07 54.4 2.0 30 240-269 26-55 (237)
297 COG1126 GlnQ ABC-type polar am 93.6 0.033 7.1E-07 55.4 1.6 29 240-268 23-51 (240)
298 TIGR01243 CDC48 AAA family ATP 93.6 0.2 4.3E-06 57.9 8.2 31 243-273 210-240 (733)
299 PRK14268 phosphate ABC transpo 93.6 0.033 7.2E-07 55.7 1.7 31 239-269 32-62 (258)
300 PRK14269 phosphate ABC transpo 93.6 0.034 7.3E-07 55.2 1.7 31 238-268 21-51 (246)
301 PRK14244 phosphate ABC transpo 93.6 0.034 7.4E-07 55.2 1.7 30 239-268 25-54 (251)
302 PRK14243 phosphate transporter 93.6 0.034 7.5E-07 55.9 1.7 30 239-268 30-59 (264)
303 PRK14272 phosphate ABC transpo 93.6 0.035 7.5E-07 55.1 1.7 31 239-269 24-54 (252)
304 cd03244 ABCC_MRP_domain2 Domai 93.6 0.041 8.9E-07 53.4 2.2 31 239-269 24-54 (221)
305 PRK14253 phosphate ABC transpo 93.6 0.035 7.6E-07 55.0 1.7 31 240-270 24-54 (249)
306 PRK14261 phosphate ABC transpo 93.6 0.034 7.4E-07 55.3 1.7 29 240-268 27-55 (253)
307 PRK13547 hmuV hemin importer A 93.6 0.039 8.5E-07 56.0 2.1 32 239-270 21-52 (272)
308 cd03234 ABCG_White The White s 93.6 0.033 7.3E-07 54.4 1.6 33 238-270 26-58 (226)
309 COG1222 RPT1 ATP-dependent 26S 93.6 0.068 1.5E-06 56.7 3.9 44 248-291 188-238 (406)
310 cd03299 ABC_ModC_like Archeal 93.6 0.04 8.6E-07 54.4 2.1 32 239-270 19-50 (235)
311 PRK11308 dppF dipeptide transp 93.6 0.034 7.4E-07 58.1 1.7 32 238-269 34-65 (327)
312 PRK13639 cbiO cobalt transport 93.6 0.039 8.5E-07 55.9 2.1 33 238-270 21-53 (275)
313 cd00267 ABC_ATPase ABC (ATP-bi 93.6 0.042 9.1E-07 50.6 2.1 36 237-272 17-52 (157)
314 PRK13643 cbiO cobalt transport 93.6 0.039 8.4E-07 56.4 2.0 34 237-270 24-57 (288)
315 PRK14270 phosphate ABC transpo 93.5 0.036 7.9E-07 55.0 1.7 30 240-269 25-54 (251)
316 PRK15112 antimicrobial peptide 93.5 0.042 9E-07 55.4 2.2 34 237-270 31-64 (267)
317 PRK13647 cbiO cobalt transport 93.5 0.04 8.8E-07 55.8 2.1 31 240-270 26-56 (274)
318 PRK14238 phosphate transporter 93.5 0.036 7.8E-07 56.0 1.7 31 239-269 44-74 (271)
319 COG1136 SalX ABC-type antimicr 93.5 0.039 8.4E-07 55.1 1.8 33 237-269 23-55 (226)
320 PRK14249 phosphate ABC transpo 93.5 0.042 9.2E-07 54.6 2.1 32 239-270 24-55 (251)
321 TIGR01242 26Sp45 26S proteasom 93.4 0.4 8.6E-06 50.6 9.5 26 248-273 159-184 (364)
322 PRK14251 phosphate ABC transpo 93.4 0.038 8.2E-07 54.8 1.7 31 239-269 24-54 (251)
323 PRK14271 phosphate ABC transpo 93.4 0.037 8E-07 56.2 1.7 33 237-269 39-71 (276)
324 cd03291 ABCC_CFTR1 The CFTR su 93.4 0.043 9.4E-07 56.2 2.2 33 237-269 55-87 (282)
325 PRK13637 cbiO cobalt transport 93.4 0.042 9.2E-07 56.1 2.1 32 239-270 27-58 (287)
326 TIGR02314 ABC_MetN D-methionin 93.4 0.042 9.2E-07 57.9 2.2 34 238-271 24-57 (343)
327 PRK13546 teichoic acids export 93.4 0.044 9.5E-07 55.5 2.2 33 237-269 42-74 (264)
328 cd01853 Toc34_like Toc34-like 93.4 0.31 6.8E-06 49.2 8.3 147 247-418 33-208 (249)
329 PRK15079 oligopeptide ABC tran 93.4 0.037 8E-07 58.0 1.7 33 237-269 39-71 (331)
330 PRK09452 potA putrescine/sperm 93.4 0.042 9.1E-07 58.7 2.1 32 238-269 33-64 (375)
331 PRK14259 phosphate ABC transpo 93.4 0.038 8.3E-07 55.8 1.7 30 239-268 33-62 (269)
332 PRK13650 cbiO cobalt transport 93.4 0.044 9.6E-07 55.7 2.1 34 237-270 25-58 (279)
333 PRK11000 maltose/maltodextrin 93.4 0.043 9.4E-07 58.3 2.1 32 238-269 22-53 (369)
334 KOG0727 26S proteasome regulat 93.4 0.15 3.2E-06 52.0 5.7 29 246-274 190-218 (408)
335 TIGR03873 F420-0_ABC_ATP propo 93.3 0.045 9.8E-07 54.6 2.1 31 240-270 22-52 (256)
336 TIGR02982 heterocyst_DevA ABC 93.3 0.048 1E-06 53.1 2.2 31 239-269 25-55 (220)
337 PF01637 Arch_ATPase: Archaeal 93.3 0.028 6E-07 53.6 0.5 37 243-279 18-56 (234)
338 PRK14260 phosphate ABC transpo 93.3 0.041 8.9E-07 55.0 1.7 31 239-269 27-57 (259)
339 COG3840 ThiQ ABC-type thiamine 93.3 0.062 1.3E-06 52.4 2.8 31 240-270 20-50 (231)
340 PRK13644 cbiO cobalt transport 93.3 0.047 1E-06 55.4 2.1 34 237-270 20-53 (274)
341 TIGR03689 pup_AAA proteasome A 93.3 0.13 2.9E-06 57.1 5.8 25 247-271 218-242 (512)
342 PRK11231 fecE iron-dicitrate t 93.3 0.047 1E-06 54.4 2.1 30 240-269 23-52 (255)
343 COG1120 FepC ABC-type cobalami 93.3 0.042 9E-07 55.9 1.7 33 238-270 21-53 (258)
344 PRK14235 phosphate transporter 93.3 0.042 9.1E-07 55.4 1.7 31 239-269 39-69 (267)
345 PHA02544 44 clamp loader, smal 93.3 0.22 4.8E-06 50.9 7.1 27 248-274 45-72 (316)
346 PRK14275 phosphate ABC transpo 93.2 0.041 9E-07 56.1 1.7 32 237-268 57-88 (286)
347 PRK09580 sufC cysteine desulfu 93.2 0.042 9E-07 54.3 1.6 29 240-268 22-50 (248)
348 TIGR02880 cbbX_cfxQ probable R 93.2 0.58 1.2E-05 48.0 10.0 24 245-268 58-81 (284)
349 PRK06645 DNA polymerase III su 93.2 0.19 4.2E-06 55.8 7.0 24 246-269 44-67 (507)
350 PRK10078 ribose 1,5-bisphospho 93.2 0.057 1.2E-06 51.4 2.5 29 244-272 1-29 (186)
351 PRK13537 nodulation ABC transp 93.2 0.049 1.1E-06 56.3 2.2 34 239-272 27-60 (306)
352 cd01125 repA Hexameric Replica 93.2 0.37 8.1E-06 47.6 8.4 23 245-267 1-23 (239)
353 PRK14961 DNA polymerase III su 93.2 0.17 3.7E-06 53.5 6.3 22 248-269 41-62 (363)
354 PRK13651 cobalt transporter AT 93.2 0.048 1E-06 56.4 2.1 33 238-270 26-58 (305)
355 COG4987 CydC ABC-type transpor 93.2 0.05 1.1E-06 60.1 2.3 35 239-273 358-392 (573)
356 PRK05800 cobU adenosylcobinami 93.2 0.26 5.6E-06 46.9 6.9 43 247-290 3-46 (170)
357 PRK13635 cbiO cobalt transport 93.2 0.049 1.1E-06 55.4 2.1 32 239-270 27-58 (279)
358 cd03232 ABC_PDR_domain2 The pl 93.2 0.043 9.3E-07 52.5 1.6 29 240-268 28-56 (192)
359 PRK09473 oppD oligopeptide tra 93.2 0.039 8.6E-07 57.7 1.4 31 239-269 36-66 (330)
360 PRK13640 cbiO cobalt transport 93.2 0.049 1.1E-06 55.4 2.1 32 239-270 27-58 (282)
361 PRK11022 dppD dipeptide transp 93.2 0.041 9E-07 57.4 1.6 31 239-269 27-57 (326)
362 cd03297 ABC_ModC_molybdenum_tr 93.2 0.051 1.1E-06 52.6 2.1 33 237-270 16-48 (214)
363 PRK13634 cbiO cobalt transport 93.2 0.049 1.1E-06 55.7 2.1 32 240-271 28-59 (290)
364 PRK14265 phosphate ABC transpo 93.1 0.044 9.6E-07 55.5 1.7 30 239-268 40-69 (274)
365 PRK13633 cobalt transporter AT 93.1 0.051 1.1E-06 55.2 2.2 33 239-271 30-62 (280)
366 PRK14254 phosphate ABC transpo 93.1 0.044 9.5E-07 56.0 1.7 31 239-269 59-89 (285)
367 PRK13652 cbiO cobalt transport 93.1 0.051 1.1E-06 55.1 2.1 32 239-270 24-55 (277)
368 COG4608 AppF ABC-type oligopep 93.1 0.044 9.5E-07 55.9 1.6 60 233-292 26-95 (268)
369 PRK14252 phosphate ABC transpo 93.1 0.045 9.8E-07 54.9 1.7 33 237-269 34-66 (265)
370 PRK08727 hypothetical protein; 93.1 0.46 9.9E-06 47.2 8.8 45 247-291 43-89 (233)
371 TIGR02868 CydC thiol reductant 93.1 0.051 1.1E-06 59.9 2.2 34 238-271 354-387 (529)
372 CHL00195 ycf46 Ycf46; Provisio 93.1 0.21 4.5E-06 55.3 6.9 45 247-291 261-312 (489)
373 PRK13536 nodulation factor exp 93.1 0.053 1.2E-06 57.0 2.2 33 239-271 61-93 (340)
374 COG1223 Predicted ATPase (AAA+ 93.1 0.066 1.4E-06 54.7 2.7 47 247-293 153-202 (368)
375 TIGR03522 GldA_ABC_ATP gliding 93.0 0.051 1.1E-06 55.9 2.0 32 239-270 22-53 (301)
376 PRK14236 phosphate transporter 93.0 0.048 1E-06 55.1 1.7 31 239-269 45-75 (272)
377 TIGR02142 modC_ABC molybdenum 93.0 0.057 1.2E-06 56.9 2.4 34 237-270 15-48 (354)
378 PRK10636 putative ABC transpor 93.0 0.053 1.1E-06 61.6 2.2 34 237-270 19-52 (638)
379 TIGR03258 PhnT 2-aminoethylpho 93.0 0.054 1.2E-06 57.5 2.2 32 238-269 24-55 (362)
380 PRK06921 hypothetical protein; 93.0 0.11 2.4E-06 52.8 4.4 26 244-269 116-141 (266)
381 TIGR01618 phage_P_loop phage n 93.0 0.28 6E-06 48.8 7.0 21 247-267 14-34 (220)
382 PRK11153 metN DL-methionine tr 92.9 0.055 1.2E-06 56.9 2.1 32 239-270 25-56 (343)
383 COG4167 SapF ABC-type antimicr 92.9 0.047 1E-06 53.3 1.5 31 239-269 33-63 (267)
384 PRK14974 cell division protein 92.9 0.33 7.1E-06 51.3 7.9 26 243-268 138-163 (336)
385 PRK14264 phosphate ABC transpo 92.9 0.05 1.1E-06 56.1 1.7 32 238-269 64-95 (305)
386 PRK11607 potG putrescine trans 92.9 0.056 1.2E-06 57.7 2.1 33 238-270 38-70 (377)
387 TIGR00678 holB DNA polymerase 92.8 0.24 5.3E-06 46.9 6.2 24 246-269 15-38 (188)
388 KOG0733 Nuclear AAA ATPase (VC 92.8 0.054 1.2E-06 60.7 1.9 73 202-292 520-599 (802)
389 PRK00411 cdc6 cell division co 92.8 0.64 1.4E-05 49.0 10.0 39 243-281 53-95 (394)
390 PRK14258 phosphate ABC transpo 92.8 0.053 1.1E-06 54.4 1.7 32 239-270 27-58 (261)
391 cd03289 ABCC_CFTR2 The CFTR su 92.8 0.054 1.2E-06 55.3 1.7 30 240-269 25-54 (275)
392 TIGR01526 nadR_NMN_Atrans nico 92.7 0.36 7.8E-06 50.6 7.8 90 245-364 162-251 (325)
393 PRK11147 ABC transporter ATPas 92.7 0.059 1.3E-06 61.2 2.1 34 238-271 22-55 (635)
394 COG4555 NatA ABC-type Na+ tran 92.7 0.076 1.6E-06 52.5 2.5 35 237-271 20-54 (245)
395 PRK14951 DNA polymerase III su 92.7 0.18 3.9E-06 57.3 5.9 129 248-396 41-179 (618)
396 PRK03695 vitamin B12-transport 92.7 0.054 1.2E-06 53.9 1.6 33 237-269 14-46 (248)
397 cd03288 ABCC_SUR2 The SUR doma 92.7 0.065 1.4E-06 53.6 2.2 30 240-269 42-71 (257)
398 PRK14263 phosphate ABC transpo 92.7 0.056 1.2E-06 54.4 1.7 31 239-269 28-58 (261)
399 TIGR01186 proV glycine betaine 92.7 0.061 1.3E-06 57.2 2.0 34 238-271 12-45 (363)
400 COG4525 TauB ABC-type taurine 92.7 0.068 1.5E-06 52.7 2.1 34 237-270 23-56 (259)
401 PF00931 NB-ARC: NB-ARC domain 92.6 0.23 5.1E-06 49.6 6.1 42 243-284 17-62 (287)
402 PRK13642 cbiO cobalt transport 92.6 0.066 1.4E-06 54.3 2.1 32 239-270 27-58 (277)
403 PRK06893 DNA replication initi 92.6 0.25 5.4E-06 48.9 6.1 21 248-268 42-62 (229)
404 PRK13636 cbiO cobalt transport 92.6 0.069 1.5E-06 54.4 2.1 34 237-270 24-57 (283)
405 COG4181 Predicted ABC-type tra 92.5 0.061 1.3E-06 52.0 1.6 30 240-269 31-60 (228)
406 PRK10762 D-ribose transporter 92.5 0.066 1.4E-06 58.8 2.0 32 238-269 23-54 (501)
407 PRK13631 cbiO cobalt transport 92.4 0.073 1.6E-06 55.5 2.1 30 240-269 47-76 (320)
408 COG1127 Ttg2A ABC-type transpo 92.4 0.076 1.7E-06 53.6 2.1 34 239-272 28-61 (263)
409 PRK15064 ABC transporter ATP-b 92.3 0.075 1.6E-06 58.8 2.3 32 238-269 20-51 (530)
410 CHL00181 cbbX CbbX; Provisiona 92.3 0.93 2E-05 46.7 10.1 26 243-268 57-82 (287)
411 PRK14257 phosphate ABC transpo 92.3 0.066 1.4E-06 56.1 1.7 31 239-269 102-132 (329)
412 PRK12323 DNA polymerase III su 92.3 0.3 6.5E-06 55.8 6.9 128 248-395 41-178 (700)
413 PLN03073 ABC transporter F fam 92.3 0.064 1.4E-06 61.9 1.7 31 237-267 195-225 (718)
414 PRK11176 lipid transporter ATP 92.2 0.079 1.7E-06 59.0 2.3 35 237-271 361-395 (582)
415 PRK11819 putative ABC transpor 92.2 0.08 1.7E-06 59.1 2.3 32 238-269 26-57 (556)
416 PTZ00361 26 proteosome regulat 92.2 0.61 1.3E-05 51.0 9.0 26 248-273 220-245 (438)
417 COG4172 ABC-type uncharacteriz 92.2 0.073 1.6E-06 57.3 1.8 37 233-269 300-337 (534)
418 PF12775 AAA_7: P-loop contain 92.2 0.36 7.7E-06 49.4 6.7 148 235-435 25-175 (272)
419 TIGR03269 met_CoM_red_A2 methy 92.2 0.069 1.5E-06 58.9 1.7 31 238-268 19-49 (520)
420 PF03796 DnaB_C: DnaB-like hel 92.1 0.13 2.7E-06 51.5 3.4 60 229-288 2-65 (259)
421 PRK10938 putative molybdenum t 92.1 0.08 1.7E-06 57.9 2.1 31 239-269 23-53 (490)
422 PRK05541 adenylylsulfate kinas 92.1 0.38 8.2E-06 45.0 6.4 29 241-269 3-31 (176)
423 TIGR00665 DnaB replicative DNA 92.0 0.14 3E-06 55.2 3.9 62 227-288 176-241 (434)
424 PRK08691 DNA polymerase III su 92.0 0.32 7E-06 55.9 6.8 23 247-269 40-62 (709)
425 PRK09536 btuD corrinoid ABC tr 92.0 0.082 1.8E-06 57.0 2.0 31 239-269 23-53 (402)
426 PF13238 AAA_18: AAA domain; P 91.9 0.06 1.3E-06 46.7 0.7 22 248-269 1-22 (129)
427 KOG0733 Nuclear AAA ATPase (VC 91.9 0.29 6.2E-06 55.2 6.0 135 248-395 226-410 (802)
428 cd02027 APSK Adenosine 5'-phos 91.9 0.8 1.7E-05 42.2 8.2 22 248-269 2-23 (149)
429 COG1131 CcmA ABC-type multidru 91.9 0.12 2.7E-06 53.2 3.1 34 239-272 25-58 (293)
430 PRK14969 DNA polymerase III su 91.9 0.29 6.3E-06 54.6 6.2 23 248-270 41-63 (527)
431 PRK10636 putative ABC transpor 91.9 0.089 1.9E-06 59.8 2.2 32 238-269 331-362 (638)
432 PRK09700 D-allose transporter 91.9 0.088 1.9E-06 57.9 2.1 33 238-270 282-314 (510)
433 PRK14530 adenylate kinase; Pro 91.9 0.095 2.1E-06 51.0 2.1 27 244-270 2-28 (215)
434 COG4136 ABC-type uncharacteriz 91.9 0.098 2.1E-06 49.7 2.1 35 239-273 22-56 (213)
435 PRK15064 ABC transporter ATP-b 91.8 0.093 2E-06 58.1 2.2 32 238-269 338-369 (530)
436 PRK08116 hypothetical protein; 91.7 0.36 7.9E-06 49.1 6.2 22 248-269 117-138 (268)
437 COG1125 OpuBA ABC-type proline 91.7 0.084 1.8E-06 53.9 1.6 38 234-271 15-53 (309)
438 cd00984 DnaB_C DnaB helicase C 91.7 0.11 2.3E-06 51.1 2.2 53 237-289 4-60 (242)
439 PRK14958 DNA polymerase III su 91.7 0.34 7.4E-06 53.8 6.5 22 248-269 41-62 (509)
440 PRK08233 hypothetical protein; 91.7 0.13 2.8E-06 47.8 2.7 25 245-269 3-27 (182)
441 COG0563 Adk Adenylate kinase a 91.7 0.079 1.7E-06 50.8 1.3 22 247-268 2-23 (178)
442 TIGR00235 udk uridine kinase. 91.6 0.075 1.6E-06 51.4 1.1 26 244-269 5-30 (207)
443 PRK10416 signal recognition pa 91.6 0.58 1.3E-05 49.0 7.8 27 243-269 112-138 (318)
444 PRK14955 DNA polymerase III su 91.6 0.39 8.4E-06 51.5 6.6 22 248-269 41-62 (397)
445 PRK00300 gmk guanylate kinase; 91.6 0.09 2E-06 50.3 1.6 28 243-270 3-30 (205)
446 PRK09700 D-allose transporter 91.6 0.095 2E-06 57.7 2.0 33 237-269 23-55 (510)
447 TIGR03263 guanyl_kin guanylate 91.6 0.088 1.9E-06 49.2 1.5 25 245-269 1-25 (180)
448 TIGR00602 rad24 checkpoint pro 91.6 0.18 4E-06 57.4 4.3 32 238-269 103-134 (637)
449 PF07728 AAA_5: AAA domain (dy 91.6 0.098 2.1E-06 46.9 1.7 42 248-291 2-43 (139)
450 PF08477 Miro: Miro-like prote 91.5 0.086 1.9E-06 45.4 1.3 23 247-269 1-23 (119)
451 PRK05480 uridine/cytidine kina 91.5 0.14 2.9E-06 49.5 2.8 27 243-269 4-30 (209)
452 PRK07940 DNA polymerase III su 91.5 0.6 1.3E-05 50.3 8.0 25 244-268 35-59 (394)
453 COG0488 Uup ATPase components 91.5 0.1 2.2E-06 58.2 2.2 34 237-270 21-54 (530)
454 TIGR02633 xylG D-xylose ABC tr 91.5 0.088 1.9E-06 57.7 1.6 32 238-269 20-51 (500)
455 PRK10261 glutathione transport 91.5 0.1 2.2E-06 59.2 2.1 33 237-269 34-66 (623)
456 PRK10070 glycine betaine trans 91.5 0.098 2.1E-06 56.4 1.9 32 239-270 48-79 (400)
457 TIGR02322 phosphon_PhnN phosph 91.5 0.09 1.9E-06 49.3 1.4 26 245-270 1-26 (179)
458 TIGR03719 ABC_ABC_ChvD ATP-bin 91.5 0.11 2.3E-06 57.9 2.3 33 237-269 23-55 (552)
459 PRK09183 transposase/IS protei 91.5 0.081 1.8E-06 53.6 1.2 27 242-268 99-125 (259)
460 PRK06217 hypothetical protein; 91.4 0.11 2.5E-06 49.2 2.1 25 246-270 2-26 (183)
461 PRK15134 microcin C ABC transp 91.4 0.092 2E-06 58.1 1.6 32 238-269 28-59 (529)
462 TIGR01193 bacteriocin_ABC ABC- 91.4 0.11 2.3E-06 59.6 2.2 34 237-270 492-525 (708)
463 PRK14531 adenylate kinase; Pro 91.4 0.11 2.4E-06 49.3 2.0 24 246-269 3-26 (183)
464 TIGR02928 orc1/cdc6 family rep 91.4 0.21 4.5E-06 52.1 4.1 26 243-268 38-63 (365)
465 TIGR02857 CydD thiol reductant 91.4 0.11 2.4E-06 57.2 2.2 33 239-271 342-374 (529)
466 COG1123 ATPase components of v 91.4 0.15 3.2E-06 56.9 3.2 45 233-277 304-351 (539)
467 COG1122 CbiO ABC-type cobalt t 91.4 0.096 2.1E-06 52.5 1.6 33 237-269 22-54 (235)
468 PRK13549 xylose transporter AT 91.4 0.089 1.9E-06 57.9 1.5 31 239-269 25-55 (506)
469 PRK10790 putative multidrug tr 91.4 0.11 2.4E-06 58.2 2.2 34 237-270 359-392 (592)
470 PRK11147 ABC transporter ATPas 91.3 0.11 2.3E-06 59.1 2.1 31 239-269 339-369 (635)
471 PRK07003 DNA polymerase III su 91.3 0.35 7.7E-06 56.1 6.1 23 248-270 41-63 (830)
472 TIGR03415 ABC_choXWV_ATP choli 91.2 0.11 2.5E-06 55.6 2.1 34 237-270 42-75 (382)
473 PRK10522 multidrug transporter 91.2 0.12 2.5E-06 57.6 2.2 32 239-270 343-374 (547)
474 KOG0057 Mitochondrial Fe/S clu 91.2 0.1 2.2E-06 57.9 1.7 32 239-270 372-403 (591)
475 TIGR02633 xylG D-xylose ABC tr 91.2 0.099 2.1E-06 57.3 1.6 36 234-269 274-310 (500)
476 PRK10762 D-ribose transporter 91.2 0.12 2.5E-06 56.9 2.1 33 238-270 271-303 (501)
477 PRK10982 galactose/methyl gala 91.2 0.11 2.4E-06 56.8 2.0 32 238-269 17-48 (491)
478 cd01130 VirB11-like_ATPase Typ 91.2 0.13 2.8E-06 49.0 2.2 32 242-273 22-53 (186)
479 TIGR03796 NHPM_micro_ABC1 NHPM 91.1 0.12 2.6E-06 59.2 2.2 33 238-270 498-530 (710)
480 PRK11174 cysteine/glutathione 91.1 0.1 2.2E-06 58.3 1.7 31 239-269 370-400 (588)
481 KOG0062 ATPase component of AB 91.1 0.11 2.4E-06 57.2 1.8 31 238-268 99-129 (582)
482 PRK11160 cysteine/glutathione 91.1 0.12 2.7E-06 57.8 2.2 33 239-271 360-392 (574)
483 cd03287 ABC_MSH3_euk MutS3 hom 91.1 0.6 1.3E-05 46.4 6.9 33 235-267 21-53 (222)
484 TIGR01243 CDC48 AAA family ATP 91.0 0.38 8.3E-06 55.6 6.2 27 248-274 490-516 (733)
485 PRK10789 putative multidrug tr 91.0 0.13 2.7E-06 57.6 2.2 32 239-270 335-366 (569)
486 PF01583 APS_kinase: Adenylyls 91.0 0.3 6.6E-06 46.1 4.4 85 244-356 1-86 (156)
487 COG4107 PhnK ABC-type phosphon 91.0 0.22 4.7E-06 48.4 3.4 55 237-291 24-80 (258)
488 PRK15439 autoinducer 2 ABC tra 91.0 0.13 2.7E-06 56.8 2.2 32 238-269 30-61 (510)
489 TIGR03797 NHPM_micro_ABC2 NHPM 90.9 0.13 2.7E-06 58.8 2.2 33 238-270 472-504 (686)
490 COG2274 SunT ABC-type bacterio 90.9 0.11 2.4E-06 59.9 1.7 31 239-269 493-523 (709)
491 COG4586 ABC-type uncharacteriz 90.9 0.11 2.5E-06 53.4 1.6 35 234-268 39-73 (325)
492 PRK14948 DNA polymerase III su 90.8 0.5 1.1E-05 53.8 6.8 25 246-270 39-63 (620)
493 TIGR01194 cyc_pep_trnsptr cycl 90.8 0.13 2.9E-06 57.2 2.2 33 239-271 362-394 (555)
494 cd03270 ABC_UvrA_I The excisio 90.8 0.11 2.3E-06 51.3 1.2 24 239-262 15-38 (226)
495 KOG0745 Putative ATP-dependent 90.8 0.14 3.1E-06 55.5 2.2 191 247-509 228-442 (564)
496 COG1132 MdlB ABC-type multidru 90.8 0.14 3.1E-06 56.9 2.4 33 239-271 349-381 (567)
497 COG0488 Uup ATPase components 90.8 0.13 2.9E-06 57.3 2.1 33 237-269 340-372 (530)
498 KOG0060 Long-chain acyl-CoA tr 90.7 0.14 3.1E-06 57.1 2.2 46 221-267 437-483 (659)
499 TIGR02640 gas_vesic_GvpN gas v 90.7 0.18 3.9E-06 50.9 2.8 35 242-276 18-52 (262)
500 cd01428 ADK Adenylate kinase ( 90.7 0.15 3.2E-06 48.1 2.0 23 247-269 1-23 (194)
No 1
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1.3e-138 Score=1118.19 Aligned_cols=482 Identities=82% Similarity=1.306 Sum_probs=468.5
Q ss_pred eeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCccccc
Q 010179 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLG 99 (516)
++|+|.+|+|++|+++|+.++++||+|+|+++++.|||++|+++++.+|+|++|+||++|++|..||++++|+|||||||
T Consensus 1 ~~G~V~~v~G~vV~a~g~~~~~~gE~v~v~~~~l~gEVI~l~~d~a~iq~ye~t~Gl~~G~~V~~tg~~lsv~lGpglLG 80 (591)
T TIGR01042 1 EYGYIYKVSGPVVVAENMAGAAMYELVRVGHDELVGEIIRLEGDKATIQVYEETSGLTVGDPVLRTGKPLSVELGPGILG 80 (591)
T ss_pred CceEEEEEECCEEEEecCCCCCcCCEEEECCCceEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEEEcCHHHhh
Confidence 37999999999999999989999999999766799999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceE
Q 010179 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (516)
Q Consensus 100 rV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~ 179 (516)
|||||+|||||++++..++.|++||++++++++++.|+|.|..+|+||.|.+|+|+|+|+||++++|+||+||+..|+|+
T Consensus 81 ~V~DgigrPLd~~~~~~~~~fi~rG~~~~~ld~~~~w~f~p~~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~ 160 (591)
T TIGR01042 81 NIFDGIQRPLKAIAEQSQSIYIPRGVNVPALDRDKKWEFTPKKLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTIT 160 (591)
T ss_pred cccCcCCCchHHHHhhccCccccCCCCCCCCCccccceeeccccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEE
Confidence 99999999999998888888999999999999999999999669999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCch
Q 010179 180 YVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259 (516)
Q Consensus 180 ~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT 259 (516)
+|+++|+||++|+|++++.+|..++++|.|+||||.|+|+++|+++++||.||||+||+|+|||||||++|||++|+|||
T Consensus 161 ~i~~~g~ytv~~~i~~~~~~g~~~~~~m~~~wPvr~p~p~~~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~gg~G~GKT 240 (591)
T TIGR01042 161 YIAPAGNYTVDDTVLEVEFQGVKKKFSMLQTWPVRSPRPVTEKLPANTPLLTGQRVLDALFPCVQGGTTAIPGAFGCGKT 240 (591)
T ss_pred EEccCCCceeeeEEEEEeeCCceeeeccceeeecccCCChhhccCCCCccccchhhhhhccchhcCCeEEEEcCCCcCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 010179 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEY 339 (516)
Q Consensus 260 ~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEy 339 (516)
+|++||++|+++|++||++||||+|||+||+++||++.+|+ +++++++|+|||+|+||||+|+.+|++++|+|+|+|||
T Consensus 241 ~l~~~lak~s~aDviVyvg~GERG~Em~evle~fp~l~dp~-~g~~~~~m~rtvlVa~tsd~p~~~R~~s~ytg~tiAEY 319 (591)
T TIGR01042 241 VISQSLSKYSNSDAIVYVGCGERGNEMAEVLMDFPELTMEV-DGREESIMKRTTLVANTSNMPVAAREASIYTGITLAEY 319 (591)
T ss_pred HHHHHHHhccCcCEEEEEEEeechHHHHHHHHHhHhhcccc-cccccccccceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988 65667899999999999999999999999999999999
Q ss_pred HHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCC
Q 010179 340 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGD 419 (516)
Q Consensus 340 frd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D 419 (516)
|||||+|||||+||+||||+|+||||+++||||+++|||+|+||+|++||||||+++|+|+++++||||+|++|++|+||
T Consensus 320 fRD~G~~Vll~~DS~tR~AeAlREIsl~lgE~P~~eGYPayl~SrLa~l~ERAG~~~~~~~~~~~GSIT~i~aVs~~ggD 399 (591)
T TIGR01042 320 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSPEREGSVSIVGAVSPPGGD 399 (591)
T ss_pred HHhcCCCEEEEecChHHHHHHHHHHHhccCCCCCCCCcCccHHHHHHHHHHhccCCccCCCCCCCccEEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987778999999999999999
Q ss_pred CCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH-c
Q 010179 420 FSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-V 498 (516)
Q Consensus 420 ~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~ 498 (516)
++|||++++++|+|+||+|||+||++||||||||+.|+||+|+.+.+||.+.+++|.++++++|++|++|+|+++|++ +
T Consensus 400 ~sePVt~~t~~i~~~f~~Ldr~LA~~ghyPAId~l~S~Sr~~~~l~~~~~~~~~~~~~~~~~~~~lL~~~~el~eiv~l~ 479 (591)
T TIGR01042 400 FSDPVTSATLGIVQVFWGLDKKLAQRKHFPSVNWLISYSKYMRALEEFYEKFYPEFVPLRTKAKEILQEEEDLNEIVQLV 479 (591)
T ss_pred CCCchHHHHHHHhcceeeeCHHHHhCCCCCCcCCchhhhhhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999977799999999999999999999999999 5
Q ss_pred CCCc
Q 010179 499 GYLW 502 (516)
Q Consensus 499 G~~~ 502 (516)
|.++
T Consensus 480 g~~~ 483 (591)
T TIGR01042 480 GKDA 483 (591)
T ss_pred CCcc
Confidence 5554
No 2
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=1.8e-136 Score=1105.83 Aligned_cols=477 Identities=59% Similarity=1.041 Sum_probs=462.9
Q ss_pred eeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccccc
Q 010179 21 YGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (516)
Q Consensus 21 ~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLGr 100 (516)
.|+|.+|+|++++++|+.++++||+|+|+++++.|||+++++|++.+|+|++|+||++|++|++||++++|+||||||||
T Consensus 1 ~G~I~~V~Gpvv~a~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~iqvye~t~Gl~~G~~V~~tg~plsV~lGpglLGr 80 (578)
T TIGR01043 1 KGRIIRVSGPLVVADGMKGAQMYEVVKVGEEGLIGEIIRIEGDKAFIQVYEETSGIKPGEPVVGTGAPLSVELGPGLLGS 80 (578)
T ss_pred CCEEEEEECCEEEEecCCCCCcCCEEEECCCcEEEEEEEEcCCeEEEEECCCCCCCCCCCEEEECCCccEEEcCHHHhcc
Confidence 38999999999999999889999999997667999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceEE
Q 010179 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTY 180 (516)
Q Consensus 101 V~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~~ 180 (516)
||||+|||||++.+..+ .|++||+++++++.++.|+|.|. +++||.|.+|||+|+|+||.+++|++|+||+..|+|+|
T Consensus 81 V~DgigrPLd~~~~~~g-~~i~rg~~~~~l~~~~~w~f~p~-~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~ 158 (578)
T TIGR01043 81 IYDGVQRPLDVLKEKTG-DFIARGVDAPGLDRDKKWHFKPT-VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVE 158 (578)
T ss_pred eeccCCccccCcccccc-cccccCccCCCcCcccccccccc-cccCccccCCceEEEEecccceeeeeecCCCCcceEEE
Confidence 99999999999877665 49999999999999999999997 99999999999999999999999999999999999999
Q ss_pred ecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCchH
Q 010179 181 VAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV 260 (516)
Q Consensus 181 i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~ 260 (516)
|+|+|+||++|+|++++.+|. ++++|.|+||+|.|+|+++|+++++||.||||+||+|+|||||||++|||++|+|||+
T Consensus 159 i~~~g~~~~~~~v~~~~~~g~-~~~~~~~~wPvr~p~p~~~R~~~~~pL~TGiRvID~l~Pi~kGqr~~I~gg~G~GKT~ 237 (578)
T TIGR01043 159 IAEEGDYTVEDTIAVVDTDGD-EEIKMYQKWPVRIPRPYKEKLPPEVPLITGQRILDTFFPIAKGGTAAIPGPFGSGKTV 237 (578)
T ss_pred eccCCCceeeeeEEEEecCCc-eeeeeeeecccccCCCchhcCCCCcchhccchhhhccccccCCCEEEEecCCCCCHHH
Confidence 999999999999999999888 8999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 010179 261 ISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYF 340 (516)
Q Consensus 261 Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyf 340 (516)
|++|||+|+++|++||++||||+|||+||+++||++++|. .+.++|+|||+|+||||+|+++|++++|+|+|+||||
T Consensus 238 l~~~lak~~~adivVyvg~GERG~E~~e~le~f~~l~dp~---~g~~~m~RTvlVanTSn~p~~aR~~s~ytg~TiAEYf 314 (578)
T TIGR01043 238 TQHQLAKWSDADIVVYIGCGERGNEMTDVLEEFPELKDPK---TGKPLMERTVLIANTSNMPVAAREASIYTGITIAEYF 314 (578)
T ss_pred HHHHHHhcCCCCEEEEEEeccChHHHHHHHHHhHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877 6788999999999999999999999999999999999
Q ss_pred HHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCC
Q 010179 341 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDF 420 (516)
Q Consensus 341 rd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~ 420 (516)
||||+|||||+||+||||+|+||||+++||||+++|||+||||+|++||||||+++|+|+++++||||+|++|++|+||+
T Consensus 315 RD~G~~Vllm~DS~sR~AeAlREIs~~lgE~P~~eGYP~yl~SrLa~~yERAG~~~~~~~~~r~GSIT~i~aVs~~ggD~ 394 (578)
T TIGR01043 315 RDMGYDVALMADSTSRWAEAMREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGGEERVGSVTVIGAVSPPGGDF 394 (578)
T ss_pred HHCCCCEEEEecChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHHHhhccccccCCCCCCccEeEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988765689999999999999999
Q ss_pred CchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-c
Q 010179 421 SDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-V 498 (516)
Q Consensus 421 ~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~ 498 (516)
+|||+++|++|+|+||+|||+||++||||||||+.|+||+++.+++||.+ ++++|.+++++++++|++|+|+++|++ +
T Consensus 395 sdPVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~lL~~~~el~~iv~lv 474 (578)
T TIGR01043 395 SEPVTQNTLRIVKVFWALDADLAQRRHFPAINWLQSYSLYVDLVQDWWHENVDPDWREMRDEAMDLLQKESELQEIVQLV 474 (578)
T ss_pred CccHHHHHHHHhCcEEEeCHHHHhcCCCCCcCcccchhhhccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999966 599999999999999999999999999 5
Q ss_pred CCCcc
Q 010179 499 GYLWS 503 (516)
Q Consensus 499 G~~~~ 503 (516)
|.|.+
T Consensus 475 G~d~L 479 (578)
T TIGR01043 475 GPDAL 479 (578)
T ss_pred CCCCC
Confidence 99955
No 3
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=2.5e-135 Score=1098.45 Aligned_cols=477 Identities=60% Similarity=1.020 Sum_probs=463.7
Q ss_pred eeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCccccc
Q 010179 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLG 99 (516)
.+|+|++|+|++|+++|+.++++||+|+|+++++.|||++++++++.+|+|++|+||++|++|++||+|++|+|||||||
T Consensus 3 ~~G~I~~V~Gpvv~~~~~~~~~~~E~v~v~~~~l~gEVi~~~~d~a~iqv~e~T~Gl~~G~~V~~tg~plsv~lGpglLG 82 (586)
T PRK04192 3 TKGKIVRVSGPLVVAEGMGGARMYEVVRVGEEGLIGEIIRIEGDKATIQVYEETSGIKPGEPVEFTGEPLSVELGPGLLG 82 (586)
T ss_pred ceeEEEEEECcEEEEEeCCCCCccCEEEECCCcEEEEEEEEeCCceEEEEecCCcCCCCCCEEEeCCCccEEEcCHHhcC
Confidence 57999999999999999988999999999766799999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceE
Q 010179 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (516)
Q Consensus 100 rV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~ 179 (516)
|||||+|||||+.++.. +.|++||+++++++++++|+|.|. +|+||.|.+|||+|.|+|+++++|+||+||+..|+++
T Consensus 83 rv~Dg~grPLd~~~~~~-~~~i~rG~~~~~l~~~~~w~f~p~-~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~ 160 (586)
T PRK04192 83 SIFDGIQRPLDELAEKS-GDFLERGVYVPALDREKKWEFTPT-VKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVK 160 (586)
T ss_pred CeecCCCCcccccchhc-ccccccCCCCCCCCcccccceecc-cccCCEecCCceEEEEecCCceeeeeecCCCCceEEE
Confidence 99999999999988777 469999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEE-EcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCc
Q 010179 180 YVAPAGQYSLKDTVLELE-FQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (516)
Q Consensus 180 ~i~~~g~~~~~~~v~~~~-~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GK 258 (516)
||+|+|+||++|+|++++ .+|..++++|.|+|||++|+|..+|+++++||.||||+||+|+||+||||++|||++|+||
T Consensus 161 ~i~~~G~ytv~~~i~~~~~~~G~~~~~~~~~~wPvr~~~p~~~R~~~~~pL~TGirvID~l~Pi~kGq~~~Ipg~~G~GK 240 (586)
T PRK04192 161 EIVSEGDYTVDDTIAVLEDEDGEGVELTMMQKWPVRRPRPYKEKLPPVEPLITGQRVIDTFFPVAKGGTAAIPGPFGSGK 240 (586)
T ss_pred EEccCCCceeeeEEEEEEccCCceeeeccccccccccCCcccccCCCCCccccCchhhhcccccccCCeEEEecCCCCCH
Confidence 999999999999999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 010179 259 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 338 (516)
Q Consensus 259 T~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAE 338 (516)
|+|++|||+|+++|++||++||||+||++||+++||++.+|. .++++|+|||+|+||||||+++|++++|+|+|+||
T Consensus 241 Tvl~~~iak~a~adivVyvg~GERg~E~~e~l~ef~~l~dp~---~g~~~m~RTvlVanTSn~Pv~aR~~s~ytgiTiAE 317 (586)
T PRK04192 241 TVTQHQLAKWADADIVIYVGCGERGNEMTEVLEEFPELIDPK---TGRPLMERTVLIANTSNMPVAAREASIYTGITIAE 317 (586)
T ss_pred HHHHHHHHhcCCCCEEEEEEcCcChHHHHHHHHHHHhhcccc---cccccceeEEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998876 67889999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCC
Q 010179 339 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG 418 (516)
Q Consensus 339 yfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~ 418 (516)
||||||+|||||+||+||||+|+||||+++||||+++|||+||+|+|++||||||+++|+++ .+||||+|++|++|+|
T Consensus 318 YfRd~G~~Vllm~DStSR~AeAlREIS~~l~E~P~~eGYP~yL~S~La~~yERAG~v~~~~~--~~GSIT~i~aVs~pgg 395 (586)
T PRK04192 318 YYRDMGYDVLLMADSTSRWAEALREISGRLEEMPGEEGYPAYLASRLAEFYERAGRVKTLGG--EEGSVTIIGAVSPPGG 395 (586)
T ss_pred HHHHCCCCEEEEecChHHHHHHHHHHHHhcCCCCccCCcCccHHHHHHHHHHhhcccccCCC--CCcceEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999998876 5899999999999999
Q ss_pred CCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc-CCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 419 DFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 419 D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
|++|||+++|++|+|+||+|||+||++||||||||+.|+||+++.+.+||.+ ++++|.+++++++++|++|+|+++|++
T Consensus 396 D~sePVt~~t~~i~dg~i~Ldr~LA~~ghyPAId~l~S~Sr~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~el~eiv~ 475 (586)
T PRK04192 396 DFSEPVTQNTLRIVKVFWALDAELADRRHFPAINWLTSYSLYLDQVAPWWEENVDPDWRELRDEAMDLLQREAELQEIVR 475 (586)
T ss_pred CCCcchHHHHHHHhCceEEEcHHHHhCCcCCccCCccchhhhhhcccchhhcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999965 699999999999999999999999999
Q ss_pred -cCCCcc
Q 010179 498 -VGYLWS 503 (516)
Q Consensus 498 -~G~~~~ 503 (516)
+|+|..
T Consensus 476 lvG~d~L 482 (586)
T PRK04192 476 LVGPDAL 482 (586)
T ss_pred HhCcccC
Confidence 899854
No 4
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=100.00 E-value=1.9e-121 Score=1046.36 Aligned_cols=477 Identities=57% Similarity=1.007 Sum_probs=458.6
Q ss_pred eeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCccccc
Q 010179 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLG 99 (516)
-+|+|++|+|++|+++|+..+++||+|.|+++.+.|||++|+++.+.+|||++++||++|++|.++|++++|++||+|||
T Consensus 3 ~~G~V~~V~G~lv~a~g~~~~~iGE~v~I~~~~l~gEVIg~~~d~a~iq~~e~t~Gl~~G~~V~~tg~~l~V~lG~~LLG 82 (1017)
T PRK14698 3 AKGRIIRVTGPLVIADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGLKPGEPVEGTGSSLSVELGPGLLT 82 (1017)
T ss_pred CceEEEEEEcCEEEEecCcCCCCCCEEEECCCcEEEEEEEEeCCEEEEEECCCCCCCCCCCEEEEcCCcceeecCHHHhh
Confidence 47999999999999999878999999999755589999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceE
Q 010179 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (516)
Q Consensus 100 rV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~ 179 (516)
|||||+||||+.+.+.+++ ||+||+++++|+++++|+|.|. +++||.|.+|||+|+|+||+++.|+||+||..+|+|+
T Consensus 83 RV~DGlGrPL~~~~~~~~~-~i~~g~~~~~l~~~~~w~f~p~-~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~ 160 (1017)
T PRK14698 83 SIYDGIQRPLEVIREKSGD-FIARGISAPALPRDKKWHFIPK-VKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIV 160 (1017)
T ss_pred cccCCCCChHHHHHHHhcc-cccCCCCCCCCCCCCeeeeEee-eecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEE
Confidence 9999999999999888877 9999999999999999999997 9999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEEE-cCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCc
Q 010179 180 YVAPAGQYSLKDTVLELEF-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (516)
Q Consensus 180 ~i~~~g~~~~~~~v~~~~~-~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GK 258 (516)
||+++|+||++|+|++++. +|..++++|.|+||||.|+|+.+|++++.||.||+|+||+|||+.||++.+++|++|+||
T Consensus 161 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~wpvr~~r~~~~~~~~~~pl~tgqrv~d~~fp~~~ggt~~~~G~~G~GK 240 (1017)
T PRK14698 161 EIADEGEYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPFGSGK 240 (1017)
T ss_pred EEcCCCCcceeeEEEEEEcCCCCEEEeeeEecCCCCCCCcccccCCCCcccccccchHhhhhhhhcCceeEeccCCCcCc
Confidence 9999999999999999995 898999999999999999999999999999999999999999999999999999999999
Q ss_pred hH------------------------------------------------------------------------------
Q 010179 259 TV------------------------------------------------------------------------------ 260 (516)
Q Consensus 259 T~------------------------------------------------------------------------------ 260 (516)
++
T Consensus 241 CV~~dt~V~l~~g~~i~i~elve~~~g~~~~~~~g~e~~~~i~~~~~v~~~~dgklv~~~~~~v~k~~~~~v~rikt~~G 320 (1017)
T PRK14698 241 CVDGDTLILTKEFGLIKIKDLYEILDGKGKKTVEGNEEWTELEEPITLYGYKDGKIVEIKATHVYKGASAGMIEIKTRTG 320 (1017)
T ss_pred ccCCcceEeecCCceeEeccceEeccCCcceeeeccceeeecccccceeeeccceEEEEeeeEEeecCCceeEEEEecCC
Confidence 22
Q ss_pred --------------------------------------------------------------------------------
Q 010179 261 -------------------------------------------------------------------------------- 260 (516)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (516)
T Consensus 321 r~I~vT~~Hpflt~~v~~~G~~~~~~ka~eLk~GD~IavpR~vp~~~~v~~~~~~~~~~~~~l~lp~~~deeLA~lLGyl 400 (1017)
T PRK14698 321 RKIKVTPIHKLFTGRVTKDGLEIEEVMAKDIKKGDRIAVAKKIDGGERVKLNIRVDQKRGKKIKIPDVLDEELAEFLGYL 400 (1017)
T ss_pred cEEEEeecceeeeeccccCCcchhhhhhhhcCcCceEeecccccccccccccccchhcccccccCCcccCHHHHHHHHHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 010179 261 -------------------------------------------------------------------------------- 260 (516)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (516)
T Consensus 401 iGDG~~~~~~v~i~n~deell~~i~~la~~~FG~~~~i~~~~~~~~l~i~sk~l~~~L~~LGl~g~k~a~~KrIPe~Vf~ 480 (1017)
T PRK14698 401 IADGTLKPRTVAIYNNDESLLKRANELAMELFGIEGKIVKERTVKALLIHSKALVDFFKKLGIPGNKKARTWKVPKELLI 480 (1017)
T ss_pred hhCCcccccceeeccccHHHHHHHHHHHHHhcCCcceeecccccceeeechHHHHHHHHHhCCccccccccccCCHHHHh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 010179 261 -------------------------------------------------------------------------------- 260 (516)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (516)
T Consensus 481 ~~~e~i~aFLrGlfdaDG~v~~~~~~I~~sT~S~~Lae~L~~LLlrlGI~s~i~~k~~~~~~~Y~L~IsG~~nL~~lg~~ 560 (1017)
T PRK14698 481 SEPEVVKAFIKAYIACDGYYDEEKGEIEIVTASEEAAYGFSYLLAKLGIYAIIREKIIGDKEYYRVVISGEANLEKLGIE 560 (1017)
T ss_pred CCHHHHHHHHHHeeccCCccccccceEEEEeccHHHHHHHHHHHHHCCceEEEeeecccCCceEEEEEechhhHHHhhhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 010179 261 -------------------------------------------------------------------------------- 260 (516)
Q Consensus 261 -------------------------------------------------------------------------------- 260 (516)
T Consensus 561 ~~~~~~~n~D~iP~~v~~~~~a~~r~~~~l~~~g~~~~~~~~~~~~sr~~~~~~~~~~~~~~l~~~~~~di~wD~vv~Ie 640 (1017)
T PRK14698 561 REARGYTSIDIVPVDVEEIYEALGRPYAELKKAGIEIHNYLSGENMSYEMFRKFAKFVGLEEIAENHLQHILFDEIVEIN 640 (1017)
T ss_pred cccccCCcccccchhHHHHHHhhccchhhhhhcccccccccccccccHHHHHhHHhhhchHHHHhhhcccccceeeEEee
Confidence
Q ss_pred -------------------------------hHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCc
Q 010179 261 -------------------------------ISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVM 309 (516)
Q Consensus 261 -------------------------------Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~ 309 (516)
.++|||+++++|++||++||||+|||+||+++||++++|. .+.++|
T Consensus 641 ~~g~~~~VyDlTV~~hNFla~~~~~~~hns~~q~~la~~~~adi~V~~~iGERg~Ev~e~l~~~~~l~~~~---~g~~~m 717 (1017)
T PRK14698 641 YISEGQEVYDITTETHNFIGGNMPTLLHNTVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPK---TGKPLM 717 (1017)
T ss_pred ccCccceEEeeeccchhhhhhhHHHHHHHHHHHHHHhhccCCCEEEEEeeccchHHHHHHHHHHHhhcccc---cCcccc
Confidence 1225677789999999999999999999999999999988 788999
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHH
Q 010179 310 KRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFY 389 (516)
Q Consensus 310 ~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ 389 (516)
+|||+|+||||+|+++|++++|+|+||||||||||+|||+|+||+||||+|+||||+++||||+++|||||||++|++||
T Consensus 718 ~rtvlv~~ts~~p~~~R~~s~y~a~tiAEyfrd~G~~Vll~~Ds~sR~A~A~REis~~l~e~P~~~gyP~~l~s~L~~~~ 797 (1017)
T PRK14698 718 ERTVLIANTSNMPVAAREASIYTGITIAEYFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFY 797 (1017)
T ss_pred ccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeccchHHHHHHHHHHHhcCCCCCCCCcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhh
Q 010179 390 ERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE 469 (516)
Q Consensus 390 ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~ 469 (516)
||||+++++|+++++||||+|++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+++||.
T Consensus 798 ERaG~~~~l~~~~~~GSIT~i~~V~~~g~D~s~Pv~~~~~~i~dg~i~L~~~La~~g~~PAId~l~S~Sr~~~~~~~~~~ 877 (1017)
T PRK14698 798 ERAGRVVTLGSDYRVGSVSVIGAVSPPGGDFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWH 877 (1017)
T ss_pred HhccCCcccCCCCCCcceEEEEEEECCCCCCCCcHHHHHHHHhCcEEecCHHHHhCCCCCCcCcccchhhhcccccchhc
Confidence 99999999998778999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred c-CCHHHHHHHHHHHHHHHhhhhHHHHHHc-CCC
Q 010179 470 Q-FDPDFINIRTKAREVLQREDDLNEIVQV-GYL 501 (516)
Q Consensus 470 ~-~~~~~~~~~~~~r~~L~~y~e~~~li~~-G~~ 501 (516)
+ ++++|.+++++++++|++|+|+++|+++ |.+
T Consensus 878 ~~~~~~~~~~~~~~~~~l~~~~el~~~i~l~g~~ 911 (1017)
T PRK14698 878 KNVDPEWKAMRDKAMELLQKEAELQEIVRIVGPD 911 (1017)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 6 6999999999999999999999999995 654
No 5
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=100.00 E-value=3.3e-121 Score=959.64 Aligned_cols=478 Identities=58% Similarity=0.995 Sum_probs=464.8
Q ss_pred eeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccccc
Q 010179 21 YGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (516)
Q Consensus 21 ~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLGr 100 (516)
.|+|.+|+|++|.++|+.+++++|+|.+++.++.|||+.+++|++.+|+|++|+||++|++|.+||+||||+||||||+.
T Consensus 2 ~G~i~~isGp~V~a~gm~~~~my~~v~Vg~~~L~gEiI~i~gd~a~iQVyE~T~Gi~~Ge~V~~Tg~pLsvELGPGll~~ 81 (588)
T COG1155 2 MGKIIRISGPVVVAEGMEGAKMYDVVKVGEMGLIGEIIRIEGNRATIQVYEDTAGIRPGEKVENTGRPLSVELGPGLLKS 81 (588)
T ss_pred CceEEEEECCEEEEecCcCCceEEEEEEcCCceeEEEEEEeCCeEEEEEEeecCCCCCCCeeecCCCceEEEeCccHHhh
Confidence 69999999999999999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCC-CCceE
Q 010179 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA-MGKVT 179 (516)
Q Consensus 101 V~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~-~g~v~ 179 (516)
||||+||||+.+.+.++ .||.||++.++||++++|+|+|. +|+||+|.+||++|+|+|++++ |++|+||.. .|+|+
T Consensus 82 IyDGiQrPL~~i~e~sg-~Fi~RGv~~p~Ldr~~kW~F~P~-~~~Gd~V~~GdvlGtV~Et~~i-~~imvpp~~~~~~v~ 158 (588)
T COG1155 82 IYDGIQRPLDVIKETSG-DFIARGLNPPALDRKKKWDFVPA-VKKGDTVYPGDVLGTVQETSLI-THRIMVPPGVSGKVT 158 (588)
T ss_pred hhhhccChHHHHHHHhh-hHhhcCCCCCCCCcccccccccc-cccCCEeccCceEEEeccCCce-EEEEeCCCCCceEEE
Confidence 99999999999998888 79999999999999999999998 6999999999999999999999 777888774 66899
Q ss_pred EecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCch
Q 010179 180 YVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259 (516)
Q Consensus 180 ~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT 259 (516)
|++++|+||++|+|++++.++..++++|.|+||||+|+|+.+|+++.+||.||+|+||+|||+.||++.+|.||+|+|||
T Consensus 159 ~i~~~G~ytv~d~ia~v~~~~g~~~~~m~~~WPVR~~rp~~eKl~p~~Pl~TGqRviDt~FPvaKGGTaaiPGpFGsGKT 238 (588)
T COG1155 159 WIAEEGEYTVEDVIATVSTEGGEVDVQMMTTWPVRKARPVKRKLPPEIPLVTGQRVIDTLFPVAKGGTAAVPGPFGSGKT 238 (588)
T ss_pred EEecCCCceeeEEEEEEecCCCeEEEEEEEeccccCCccccccCCCCCcccccceeehhhcccccCccccccCCCCCCcE
Confidence 99999999999999999977669999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 010179 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEY 339 (516)
Q Consensus 260 ~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEy 339 (516)
++++++|+++++|++||++||||++|++|++.+||+|+||. .+..+|+||++|+||||||.++|++++|+|+|+|||
T Consensus 239 V~qh~laK~sdadiVVyigCGERGNEmtevL~eFPeL~Dp~---tg~~lm~RT~liaNTSnMPVAAREasIYtGiTiaEY 315 (588)
T COG1155 239 VSQHTLSKLADGDIVIYVGCGERGNEMTEVLQEFPELKDPN---TGQPLMDRTVLIANTSNMPVAAREASIYTGITIAEY 315 (588)
T ss_pred ehhhhhhhhccCCEEEEEecCCccchHHHHHHhCccccCCC---CCCcccceeeEeecCccchHHHhhhhhhhhhhHHHH
Confidence 99999999999999999999999999999999999999987 788999999999999999999999999999999999
Q ss_pred HHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCC
Q 010179 340 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGD 419 (516)
Q Consensus 340 frd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D 419 (516)
|||||+||+++.||++|||+|+||||.+++|+|+++|||+||.++|++||||||+++++|++++.||+|++++|++||||
T Consensus 316 ~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYERaG~v~~~~~~~r~GsvtV~gaVSPpGGd 395 (588)
T COG1155 316 YRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYERAGRVRLVSPEERFGSITVIGAVSPPGGD 395 (588)
T ss_pred HHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHhcCeeeecCCCcceEEEEEecCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred CCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhh-cCCHHHHHHHHHHHHHHHhhhhHHHHHH-
Q 010179 420 FSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE-QFDPDFINIRTKAREVLQREDDLNEIVQ- 497 (516)
Q Consensus 420 ~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~-~~~~~~~~~~~~~r~~L~~y~e~~~li~- 497 (516)
+++||+.+|+.+...||.||++||+++|||||||+.|+|.|.+.+++||. .++++|.+++.+++++|++..+++++++
T Consensus 396 fSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~v~~~~~~~r~~a~~~Lq~e~elqeiv~l 475 (588)
T COG1155 396 FSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDENVSPEWGALRDQAMEILQRESELQEIVQL 475 (588)
T ss_pred cCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 5899999999999999999999999999
Q ss_pred cCCCccc
Q 010179 498 VGYLWSL 504 (516)
Q Consensus 498 ~G~~~~~ 504 (516)
+|.|+.-
T Consensus 476 VG~eal~ 482 (588)
T COG1155 476 VGYDALP 482 (588)
T ss_pred hCccccc
Confidence 9999853
No 6
>KOG1352 consensus Vacuolar H+-ATPase V1 sector, subunit A [Energy production and conversion]
Probab=100.00 E-value=7.4e-122 Score=935.34 Aligned_cols=501 Identities=76% Similarity=1.213 Sum_probs=486.8
Q ss_pred CccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCe
Q 010179 2 PSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (516)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~ 81 (516)
+-+.+..+..+....+...+|+|-+|+|++|.+.++-+.+++|+|+++...+.|||+.+++|.+.+|+|++|+|+..||+
T Consensus 2 e~~~~~~~~~~~~e~~es~~G~v~~VSGPVV~a~~M~G~aMYELVrVGh~~LvGEiIrlegD~aTIQVYEeTsG~tVgDp 81 (618)
T KOG1352|consen 2 ENARKSILRLSLDEEEESEYGRVYSVSGPVVVAENMAGCAMYELVRVGHDELVGEIIRLEGDMATIQVYEETSGLTVGDP 81 (618)
T ss_pred chhhhhhhhccccchhhhccceEEeccCceEehhcccchHHHHHHHcchHhhhhheeEecCceeEEEEEeccCCcccCCc
Confidence 33445556666666778899999999999999999989999999999887899999999999999999999999999999
Q ss_pred EEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecc
Q 010179 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (516)
Q Consensus 82 V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~ 161 (516)
|..||+||+|+||||++|.||||+||||..+.+.+++.|+|+|++.++|+++..|+|.|.++++||.|.+||++|.|+||
T Consensus 82 vlrTgkPLsvELGPGimgsIfDGIQRPLk~I~~~s~siyiPkGv~~~aL~r~~~weF~p~k~~vg~hitGGDiyg~V~EN 161 (618)
T KOG1352|consen 82 VLRTGKPLSVELGPGIMGSIFDGIQRPLKDISELSQSIYIPKGVNTPALDREIKWEFTPGKLRVGDHITGGDIYGSVFEN 161 (618)
T ss_pred hhhcCCcceEeeCcchhhhhhhhhhhhHHHHHHhcCcEeccCCCCccccCccceeecccceeeecceeecCceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccc
Q 010179 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFP 241 (516)
Q Consensus 162 ~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~p 241 (516)
++++|++++||...|+|+||||.|+|+++|.|+++|++|.+..++|+|.||||+|+|+.++++.+.||.||+|++|+|+|
T Consensus 162 sli~hki~lpPr~~Gtvt~iAp~G~Y~~~d~vlE~Ef~g~k~~~tmlq~WPVR~pRPv~ekl~an~PLltGQRvLDalfP 241 (618)
T KOG1352|consen 162 SLIKHKILLPPRARGTVTYIAPAGNYTLDDVVLELEFDGEKTKFTMLQTWPVRQPRPVTEKLPANHPLLTGQRVLDALFP 241 (618)
T ss_pred chhhceeecCCccCceEEEEecCCccccccEEEEEeecCceeeEEEEEecccCCCcchhhccCCCCcccccchHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~ 321 (516)
|..|++.+|.|.+|||||++.+.+.++++.|++||++||||++|+.|++.+||+|+.+. ++..+..|+||.+|+|||||
T Consensus 242 cVqGGTtaIPGAFGCGKTVISQsLSKYSNSD~iiYVGCGERGNEMsEVL~dFPeLt~ev-~G~~esiMKRT~LVANTSNM 320 (618)
T KOG1352|consen 242 CVQGGTTAIPGAFGCGKTVISQSLSKYSNSDAIIYVGCGERGNEMSEVLMDFPELTMEV-DGKTESIMKRTALVANTSNM 320 (618)
T ss_pred hhcCCccccCcccccchHHHHHHHhhccCCCeEEEEcccccchhHHHHHHhChhhEEec-CCcchhhhhhhhhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999998876 77888999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCC
Q 010179 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGP 401 (516)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~ 401 (516)
|.++|++++|+++|+||||||||+||-.|.||++|||+|+||||.+++|+|+..|||+||.++|++||||||+++|||++
T Consensus 321 PVAAREASIYTGITlsEYfRDmG~nVsMmADStSRWAEALREISGRLaEMPADsGyPAYLgArLAsFYERAG~vkcLGsP 400 (618)
T KOG1352|consen 321 PVAAREASIYTGITLSEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLGARLASFYERAGRVKCLGSP 400 (618)
T ss_pred chhhhhhhhhhcccHHHHHHhcCcceeeeecchhHHHHHHHHhhhhhhcCcCcCCCcHHHHHHHHHHHHhcCceeecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHH
Q 010179 402 ERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTK 481 (516)
Q Consensus 402 ~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~ 481 (516)
++.||+|++++|++||||++|||+.+|.+|++.||.||++||+|.|||.|||+.|+|++|..|++||++..|++..++.+
T Consensus 401 ~ReGsVsIVgAVSPpGGDFsDPVTsATLgIvQVFWGLDKKLAQRKHFPSiNwliSYSkY~~aL~~~Ye~~~peF~~lRtk 480 (618)
T KOG1352|consen 401 DREGSVSIVGAVSPPGGDFSDPVTSATLGIVQVFWGLDKKLAQRKHFPSINWLISYSKYMRALDPFYEKNYPEFVVLRTK 480 (618)
T ss_pred CcCceeEEEEeecCCCCCcCCcchhhhhheeeehhcccHHHHhhccCCccchhhhHHHHHHHHHHHHHhcCCCccchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHHH-cCCCcc
Q 010179 482 AREVLQREDDLNEIVQ-VGYLWS 503 (516)
Q Consensus 482 ~r~~L~~y~e~~~li~-~G~~~~ 503 (516)
+|++|++.+++.++++ +|..+.
T Consensus 481 ~keilq~eedl~eivQLVGK~aL 503 (618)
T KOG1352|consen 481 AKEILQEEEDLSEIVQLVGKSAL 503 (618)
T ss_pred HHHHHhhhhhHHHHHHHhhhhhh
Confidence 9999999999999999 887654
No 7
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=100.00 E-value=1.5e-116 Score=904.20 Aligned_cols=369 Identities=73% Similarity=1.239 Sum_probs=361.4
Q ss_pred cceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecccccccc
Q 010179 88 PLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHH 167 (516)
Q Consensus 88 ~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~ 167 (516)
||||+|||||||+||||+||||+.+.+..++.|++||+++++||++++|+|+|. +|+||.|.+|||+|+|+||.+++|+
T Consensus 1 ~lsveLgPGll~~i~DGiqrpL~~i~~~~~~~fi~rg~~~~~ld~~~~w~f~p~-~k~gd~v~~gd~~g~v~e~~~~~h~ 79 (369)
T cd01134 1 PLSVELGPGLLGSIYDGIQRPLDKIAEITKGIFIPRGVNVPALDRDKKWDFKPL-VKVGDHVTGGDILGTVPENSLIEHK 79 (369)
T ss_pred CcceEeccchhccccCcccCCHHHHHHhhcCCcccCCCCCCCCCCCCeeeeEec-cccCCCccCCCEEEEEecCCceeeE
Confidence 689999999999999999999999988677789999999999999999999997 8999999999999999999999999
Q ss_pred ccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCc
Q 010179 168 VALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGT 247 (516)
Q Consensus 168 ~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr 247 (516)
||+||+..|+|++|+|+|+||++|+|++++.+|..++++|.|+|||++++|..+|+.+++||.||||+||+|+||+||||
T Consensus 80 imvp~~~~g~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~Pv~~~~P~~~r~~~~~pL~TGirvID~l~Pi~kGqr 159 (369)
T cd01134 80 IMVPPRVRGTVTYIAPAGDYTVDDVILEVEFDGKKEEITMVQKWPVRQPRPVKEKLPPNEPLLTGQRVLDTLFPVVKGGT 159 (369)
T ss_pred EeCCCCCCeEEEEEecCCCeeEEEEEEEEEeCCeEeccccceeeecccCCCccccCCCCCchhccchhhhccccccCCCE
Confidence 99999999999999999999999999999999999999999999999999989999999999999999999999999999
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~ 327 (516)
++|||++|+|||+|+++|++|+++|++||++||||+||++||+++||++.++. .++++|+|||+|+||||+|+.+|+
T Consensus 160 ~~I~G~~G~GKT~L~~~Iak~~~~dvvVyv~iGERg~Ev~e~l~ef~~l~~~~---~~~~~m~rtvlV~nts~~p~~~R~ 236 (369)
T cd01134 160 AAIPGPFGCGKTVIQQSLSKYSNSDIVIYVGCGERGNEMTEVLEEFPELTDPV---TGEPLMKRTVLIANTSNMPVAARE 236 (369)
T ss_pred EEEECCCCCChHHHHHHHHhCCCCCEEEEEEeCCChHHHHHHHHHHHhhcccc---ccCCccceEEEEEECCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999877 788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCce
Q 010179 328 ASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSV 407 (516)
Q Consensus 328 ~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSI 407 (516)
+++|+|+|+||||||+|+|||+|+||+||||+|+||||+++||||+++|||+|++++|++||||||+++++|+++++|||
T Consensus 237 ~s~yta~tiAEYfrd~G~dVll~~Ds~tR~A~A~REIs~~l~E~P~~~GYP~yl~s~La~~yERAG~~~~~~~~~~~GSI 316 (369)
T cd01134 237 ASIYTGITIAEYFRDMGYNVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGARLASFYERAGRVKCLGSPGREGSV 316 (369)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCccCcCccHHHHHHHHHHhcccccccCCCCCCccE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887788999
Q ss_pred eEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccc
Q 010179 408 TIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY 460 (516)
Q Consensus 408 T~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~ 460 (516)
|+|++|++|+||++|||++++++|+|+||+|||+||++||||||||+.|+|||
T Consensus 317 T~i~~V~~~g~D~sdPV~~~t~~i~dg~i~Lsr~La~~g~yPAId~l~S~Sry 369 (369)
T cd01134 317 TIVGAVSPPGGDFSEPVTQATLRIVQVFWGLDKKLAQRRHFPSINWLISYSKY 369 (369)
T ss_pred EEEEEEEccCCCcCcchHHhhHhhcceEEEECHHHHhCCCCCCcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999996
No 8
>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=100.00 E-value=1.7e-111 Score=873.38 Aligned_cols=371 Identities=29% Similarity=0.465 Sum_probs=345.0
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEcCC----ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCccee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHD----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~----~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsV 91 (516)
...+.+|+|++|+|.++++.|+ ++++||+|.|... ...|||++|+++++++|||++..|+.+|++|..+|+++++
T Consensus 20 ~~~~~~G~v~~v~G~~lea~g~-~~~iGelc~i~~~~~~~~~~aEVvgf~~~~~~L~p~~~~~gv~~g~~V~~~~~~~~v 98 (441)
T COG1157 20 DPYKRRGRLTRVTGLLLEAVGP-QARIGELCKIERSRGSEKVLAEVVGFNEERVLLMPFEPVEGVSPGAEVVPTGRPLSV 98 (441)
T ss_pred CcceEEEEEEEEeeeEEEEecC-CCcccceEEEEecCCCCceeEEEEEEcCCeEEEeccCccccCCCCCEEEecCCcccc
Confidence 3467889999999999999985 7999999999632 2399999999999999999999999999999999999999
Q ss_pred ecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCC
Q 010179 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (516)
Q Consensus 92 pvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~p 171 (516)
++|++|||||+|++|||||+.+.... ..
T Consensus 99 ~~g~~lLGRVld~~G~plDg~~~~~~----------------~~------------------------------------ 126 (441)
T COG1157 99 PVGDALLGRVLDGLGRPLDGGGLPDG----------------TE------------------------------------ 126 (441)
T ss_pred ccChhhhhhhhccCCCcCcCCCCCCC----------------cc------------------------------------
Confidence 99999999999999999998431110 00
Q ss_pred CCCCCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccCCcccc
Q 010179 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (516)
Q Consensus 172 p~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I 250 (516)
+.|+. .|++++.|.++++||.||||+||.|+|||+|||+||
T Consensus 127 --------------------------------------~~~l~~~pp~pm~R~~I~~~l~tGVRaIDgllT~G~GQRiGI 168 (441)
T COG1157 127 --------------------------------------RRPLDAPPPNPLKRRPIEEPLDTGVRAIDGLLTCGKGQRIGI 168 (441)
T ss_pred --------------------------------------cccccCCCCCchhcccccccccccceeeecccccccCceeEE
Confidence 11232 233478999999999999999999999999999999
Q ss_pred CCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 251 ~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
|+++|+||||||+||++++.+|++|+++||||+|||+||+++. .+++.++|||+|++|||+||.+|.+++
T Consensus 169 FAgsGVGKStLLgMiar~t~aDv~ViaLIGERGREVrEFIE~~----------Lg~egl~rsViVvATSD~s~l~R~~aa 238 (441)
T COG1157 169 FAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEKD----------LGEEGLKRSVVVVATSDESALMRLKAA 238 (441)
T ss_pred EecCCCcHHHHHHHHhccccCCEEEEEEeeccchhHHHHHHHh----------cchhhccceEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999961 467779999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
++|++|||||||||+||||||||+||||+|+|||++++||||+++|||||+|+.|++|+||||+. .+||||+|
T Consensus 239 ~~At~IAEyFRDqG~~VLL~mDSlTRfA~AqREI~LA~GEpP~~kGYppSVF~~LP~LlERaG~~-------~~GsITaf 311 (441)
T COG1157 239 FTATTIAEYFRDQGKRVLLIMDSLTRFAMAQREIGLAAGEPPATKGYPPSVFSELPRLLERAGNG-------DKGSITAF 311 (441)
T ss_pred HHHHHHHHHHHhCCCeEEEEeecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHhHHHHhhcCCC-------CCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999984 68999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
|||+++|||++|||+|++++||||||||||+||++|||||||+++|+||+|+++ ++++|++.+.++|++|+.|+
T Consensus 312 YTVLveGDD~~dPiaD~~RsILDGHIvLsR~LA~~ghyPaIdvl~SiSRvm~~i------~~~~h~~~a~~~r~lls~y~ 385 (441)
T COG1157 312 YTVLVEGDDMNDPIADEVRSILDGHIVLSRALAEAGHYPAIDVLASISRVMPQI------VSEEHRKAARRLRQLLSRYE 385 (441)
T ss_pred EEEEeecCCCCCchhhhhhhhccceEEeeHhHHhcCCCCCcchHHHHHHHhhhc------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 99999999999999999999
Q ss_pred hHHHHHHcCC
Q 010179 491 DLNEIVQVGY 500 (516)
Q Consensus 491 e~~~li~~G~ 500 (516)
|+++||++|+
T Consensus 386 e~edLi~iGa 395 (441)
T COG1157 386 ENEDLIRIGA 395 (441)
T ss_pred HHHHHHHhcC
Confidence 9999999875
No 9
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=100.00 E-value=6.6e-106 Score=859.07 Aligned_cols=393 Identities=23% Similarity=0.331 Sum_probs=368.3
Q ss_pred CccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCe
Q 010179 2 PSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (516)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~ 81 (516)
.+.+++++++|+...+.+.+|+|++|.|++++++|++++++||+|+|. +.+.|||++++++++.+++|++++||+.|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~G~V~~v~g~ii~v~gl~~~~~gEl~~i~-~~~~g~Vi~l~~~~v~~~~l~~~~gi~~G~~ 87 (497)
T TIGR03324 9 FQQLDQARESFQPQLTVQEVGTVESVSTGIARVHGLPGVGFEELLRFP-GGLLGIAFNVDEDEVGVVLLGEYSHLQAGDE 87 (497)
T ss_pred HHHHHHHHHhcCCCcceeEEEEEEEEeceEEEEEccCCCCcCCEEEEC-CCcEEEEEEEcCCeEEEEEecCCcCCcCCCE
Confidence 467899999999999999999999999999999998899999999995 4589999999999999999999999999999
Q ss_pred EEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecc
Q 010179 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (516)
Q Consensus 82 V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~ 161 (516)
|.+||++++||+|++|||||+|++|+|||+.+. ++
T Consensus 88 V~~tg~~~~vpvg~~llGRVvd~lG~PiDg~~~---------------~~------------------------------ 122 (497)
T TIGR03324 88 VERTGRVMDVPVGDGLLGRVVDPLGRPLDGGGP---------------LA------------------------------ 122 (497)
T ss_pred EEECCCCCeEECCHhhCcCEECCCCCCcCCCCC---------------CC------------------------------
Confidence 999999999999999999999999999998421 10
Q ss_pred ccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCcccccccccccccc
Q 010179 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALF 240 (516)
Q Consensus 162 ~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~ 240 (516)
..++||+..++| +++|.++++||+||||+||+|+
T Consensus 123 ---------------------------------------------~~~~~~i~~~~p~~~~R~~v~epl~TGI~aID~l~ 157 (497)
T TIGR03324 123 ---------------------------------------------SSPRLPIERPAPPIMDRAPVTVPLQTGLKVIDALI 157 (497)
T ss_pred ---------------------------------------------CCceeehhccCcCccccCCCCchhhcCCEEEeccC
Confidence 013578866554 7899999999999999999999
Q ss_pred ccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~t 318 (516)
|||||||++|||++|+|||+| +.||+||+++|+ |||++||||++||.+|++++ +++++|+|||+|++|
T Consensus 158 pigrGQR~~Ifg~~g~GKT~Lal~~I~~q~~~dv~~V~~~IGeR~rev~e~i~~l----------~~~~~l~~tvvV~at 227 (497)
T TIGR03324 158 PIGRGQRELILGDRQTGKTAIAIDTILNQKGRNVLCIYCAIGQRASAVAKVVANL----------REHGAMDYTIVVVTE 227 (497)
T ss_pred CcccCCEEEeecCCCCCHHHHHHHHHHHhcCCCcEEEEEEeccCcHHHHHHHHHh----------hhcCCcceeEEEEeC
Confidence 999999999999999999999 579999999998 99999999999999999975 678899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC
Q 010179 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398 (516)
Q Consensus 319 sd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~ 398 (516)
||+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++.
T Consensus 228 sd~p~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~lgepPgr~gYPg~vF~~~srLlERag~~~~- 306 (497)
T TIGR03324 228 GNDPPGLQYIAPYAATSIGEHFMEQGRDVLIVYDDLTQHARAYRELSLLLRRPPGREAFPGDIFYVHSRLLERSTHLNE- 306 (497)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEEEcChhHHHHHHHHHHhhccCCCccCcCCccHHHHhHHHHHhhhhccC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred CCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHH
Q 010179 399 GGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINI 478 (516)
Q Consensus 399 ~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~ 478 (516)
..++||||+||+|++++||++|||+|+++|||||||+|||+||++||||||||+.|+||+|..+ .+++|+++
T Consensus 307 --~~~~GSITal~~V~~~~dD~s~pI~d~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~------~~~~~~~~ 378 (497)
T TIGR03324 307 --ELGGGSLTALPIIETEAQNISAYIPTNLISITDGQIYLSPTLFELGVLPAVDVGKSVSRVGGKA------QLAAYRAV 378 (497)
T ss_pred --CCCCcceeEEEEEEcCCCCCCCcchHhheeccceEEEEcHHHHhCCCCCcCCCccccccCCccc------cCHHHHHH
Confidence 1147999999999999999999999999999999999999999999999999999999999987 78999999
Q ss_pred HHHHHHHHHhhhhHHHHHHcCCCccc
Q 010179 479 RTKAREVLQREDDLNEIVQVGYLWSL 504 (516)
Q Consensus 479 ~~~~r~~L~~y~e~~~li~~G~~~~~ 504 (516)
+.++|+.|++|+|+++++++|.+.+.
T Consensus 379 a~~lr~~la~y~e~e~~~~~G~~ld~ 404 (497)
T TIGR03324 379 AGDLKLAYAQFEELETFARFGARLDE 404 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCH
Confidence 99999999999999999999977543
No 10
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.2e-104 Score=853.41 Aligned_cols=392 Identities=24% Similarity=0.326 Sum_probs=366.3
Q ss_pred ccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeE
Q 010179 3 SVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPV 82 (516)
Q Consensus 3 ~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V 82 (516)
..+++++++|+...+.+.+|+|++|.|++++++|++++++||+|+|. +++.|||++++++++.+++|++++||+.|+.|
T Consensus 10 ~~~~~~i~~~~~~~~~~~~G~V~~v~g~~v~v~g~~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~g~~V 88 (502)
T PRK09281 10 AIIKQQIENFDAEAEVEEVGTVISVGDGIARVYGLDNVMAGELLEFP-GGVYGIALNLEEDNVGAVILGDYEDIKEGDTV 88 (502)
T ss_pred HHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECccccccCCEEEEC-CCcEEEEEEEcCCeEEEEEecCcccccCCCee
Confidence 57889999999999999999999999999999999899999999997 44899999999999999999999999999999
Q ss_pred EEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccc
Q 010179 83 LRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (516)
Q Consensus 83 ~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~ 162 (516)
.+||++++||+|++|||||||++|||||+.+.. ..
T Consensus 89 ~~~~~~~~v~vg~~llGrv~d~~G~pid~~~~~---------------~~------------------------------ 123 (502)
T PRK09281 89 KRTGRILEVPVGEALLGRVVNPLGQPIDGKGPI---------------EA------------------------------ 123 (502)
T ss_pred eecCCceEEecCHHhcCCEEccCCCCcCCCCCC---------------CC------------------------------
Confidence 999999999999999999999999999984211 00
Q ss_pred cccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccc
Q 010179 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFP 241 (516)
Q Consensus 163 ~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~p 241 (516)
.++||+.. |+++++|.++++||+||||+||+|+|
T Consensus 124 ---------------------------------------------~~~~~i~~~~p~~~~R~~~~~~l~TGi~~ID~l~p 158 (502)
T PRK09281 124 ---------------------------------------------TETRPVERKAPGVIDRKSVHEPLQTGIKAIDAMIP 158 (502)
T ss_pred ---------------------------------------------CceecccCCCcCccccCCccceeecCCeeeecccc
Confidence 02466644 44588999999999999999999999
Q ss_pred cccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCC
Q 010179 242 SVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ts 319 (516)
||||||++|||++|+|||+| +.+|++++++|+ |||++||||++|+++|+++| ++.++|+|||+|++|+
T Consensus 159 igrGQr~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~IGer~~ev~e~~~~~----------~~~~~l~~tvvv~ats 228 (502)
T PRK09281 159 IGRGQRELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAIGQKASTVAQVVRKL----------EEHGAMEYTIVVAATA 228 (502)
T ss_pred cccCcEEEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEecCChHHHHHHHHHH----------hhcCCccceEEEEeCC
Confidence 99999999999999999999 679999999999 59999999999999999975 5778999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCC
Q 010179 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLG 399 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~ 399 (516)
|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++..
T Consensus 229 d~p~~~r~~a~~~a~tiAEyfrd~G~~VLli~DdlTr~A~A~REisl~~gepPgr~gyP~~vf~~~s~LlERag~~~~~- 307 (502)
T PRK09281 229 SDPAPLQYLAPYAGCAMGEYFMDNGKDALIVYDDLSKQAVAYRQLSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSDE- 307 (502)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhhccCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHH
Q 010179 400 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR 479 (516)
Q Consensus 400 ~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~ 479 (516)
.++||||++|+|++|+||++|||||+++||+||||+|||+||++||||||||+.|+||+|+.+ .+++|++++
T Consensus 308 --~~~GSITal~~V~~~~dD~s~pI~d~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~------~~~~~~~~a 379 (502)
T PRK09281 308 --LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNAGIRPAINVGISVSRVGGAA------QIKAMKKVA 379 (502)
T ss_pred --CCCccEEEEEEEECCCCCCCCcchHhhhcccceEEEEcHHHHhCCCCCccCCcccccccCCcc------CCHHHHHHH
Confidence 247999999999999999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHHHHHHHhhhhHHHHHHcCCCccc
Q 010179 480 TKAREVLQREDDLNEIVQVGYLWSL 504 (516)
Q Consensus 480 ~~~r~~L~~y~e~~~li~~G~~~~~ 504 (516)
.++|++|++|+|+++++++|.+.+.
T Consensus 380 ~~lr~~la~y~e~~~l~~~g~~l~~ 404 (502)
T PRK09281 380 GTLRLDLAQYRELEAFAQFGSDLDE 404 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 9999999999999999999977653
No 11
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=100.00 E-value=3.7e-104 Score=851.46 Aligned_cols=393 Identities=25% Similarity=0.326 Sum_probs=365.4
Q ss_pred CccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCe
Q 010179 2 PSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (516)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~ 81 (516)
++.+++++++|+...+.+.+|+|++|.|++++++|+.++++||+|+|. +++.|||++++++++.+++|+++.||+.|+.
T Consensus 8 ~~~~~~~i~~~~~~~~~~~~G~V~~v~g~ii~v~g~~~~~~ge~~~i~-~~~~g~Vi~~~~~~~~~~~~~~~~gi~~G~~ 86 (501)
T TIGR00962 8 SELIKQEIKNFEKDIEMEEVGTVVSVGDGIARVYGLENVMSGELIEFE-GGVQGIALNLEEDSVGAVIMGDYSNIREGST 86 (501)
T ss_pred HHHHHHHHHhcCCcceeEEEEEEEEEeCCEEEEECCcCCCCCCEEEEC-CCeEEEEEEecCCeEEEEEecCCcCCCCCCe
Confidence 367889999999999999999999999999999999899999999996 4489999999999999999999999999999
Q ss_pred EEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecc
Q 010179 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (516)
Q Consensus 82 V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~ 161 (516)
|.+||++++||+|++|||||||++|||||+.+....
T Consensus 87 V~~tg~~~~v~vg~~llGRV~d~~G~pld~~~~~~~-------------------------------------------- 122 (501)
T TIGR00962 87 VKRTGRILKVPVGDGLLGRVVNALGQPIDGKGPIDS-------------------------------------------- 122 (501)
T ss_pred eEecCCccEEecChHhcCCEeCCCCCeeCCCCCcCC--------------------------------------------
Confidence 999999999999999999999999999998431100
Q ss_pred ccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCcccccccccccccc
Q 010179 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALF 240 (516)
Q Consensus 162 ~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~ 240 (516)
..+||+.. ++++++|.++++||+||||+||+|+
T Consensus 123 ----------------------------------------------~~~~~i~~~~p~~~~R~~i~~pl~TGi~aID~l~ 156 (501)
T TIGR00962 123 ----------------------------------------------DEFRPIEKIAPGVMERKSVHEPLQTGIKAIDAMI 156 (501)
T ss_pred ----------------------------------------------CCceeeecCCCChhhcCCcCceeccCCceeeccC
Confidence 01344433 3447899999999999999999999
Q ss_pred ccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~t 318 (516)
|||||||++|||++|+|||+| +.+|+|++++|+ |||++||||+|||+||++++ .+.++|+|||+|++|
T Consensus 157 pigrGQr~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~~----------~~~~~l~~tvvV~at 226 (501)
T TIGR00962 157 PIGRGQRELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAIGQKASTVAQVVRKL----------EEHGAMDYTIVVAAT 226 (501)
T ss_pred CcccCCEEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEccCChHHHHHHHHHH----------HhcCccceeEEEEec
Confidence 999999999999999999999 689999999999 59999999999999999985 567899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC
Q 010179 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398 (516)
Q Consensus 319 sd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~ 398 (516)
+|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++..
T Consensus 227 sd~p~~~r~~a~~~a~aiAEyfrd~G~~VLlv~Ddltr~A~A~REisl~lgepP~~~gYP~~vf~~~srLlERag~~~~~ 306 (501)
T TIGR00962 227 ASDSASLQYLAPYTGCTMAEYFRDNGKHALIIYDDLSKHAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAKLNDE 306 (501)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHHhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHH
Q 010179 399 GGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINI 478 (516)
Q Consensus 399 ~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~ 478 (516)
+ ++||||++++|++|+||++|||+|+++|||||||+|||+||++||||||||+.|+||+++.+ .+++|.++
T Consensus 307 ~---g~GSITal~~V~~~~dD~s~pI~~~~~sItDGqIvLsr~La~~G~~PAIdv~~SvSRv~~~~------~~~~~~~~ 377 (501)
T TIGR00962 307 K---GGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLESDLFNSGIRPAINVGLSVSRVGGAA------QIKAMKQV 377 (501)
T ss_pred C---CCcceEEEEEEECCCCCCCCcchHhhhhhcceEEEEcHhHHhCCCCCccCCccchhccCccc------cCHHHHHH
Confidence 1 36999999999999999999999999999999999999999999999999999999999988 78999999
Q ss_pred HHHHHHHHHhhhhHHHHHHcCCCccc
Q 010179 479 RTKAREVLQREDDLNEIVQVGYLWSL 504 (516)
Q Consensus 479 ~~~~r~~L~~y~e~~~li~~G~~~~~ 504 (516)
+.++|.+|++|+|+++++++|.+.+.
T Consensus 378 a~~lr~~la~y~e~~~l~~~g~~ld~ 403 (501)
T TIGR00962 378 AGSLRLELAQYRELEAFSQFASDLDE 403 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 99999999999999999999977654
No 12
>PRK04196 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=1.1e-103 Score=841.61 Aligned_cols=377 Identities=26% Similarity=0.416 Sum_probs=345.5
Q ss_pred eeeeEEEEEECceEEEEeCCCCccccEEEEc--CCc-eEEEEEEEeCCeEEEEEcccccCCC-CCCeEEEcCCcceeecC
Q 010179 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDN-LIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELG 94 (516)
Q Consensus 19 ~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~~-l~gEVv~~~~d~v~l~~~~~t~GI~-~G~~V~~tg~~lsVpvG 94 (516)
+.||+|++|.|++++++|+.++++||+|+|. ++. +.|||++|++|.+.+|+|++++||+ .|++|.+||++++||+|
T Consensus 2 ~~yg~V~~i~g~~v~v~g~~~~~~ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~t~gl~i~G~~V~~tg~~~~V~vg 81 (460)
T PRK04196 2 KEYRTVSEIKGPLLFVEGVEGVAYGEIVEIELPNGEKRRGQVLEVSEDKAVVQVFEGTTGLDLKDTKVRFTGEPLKLPVS 81 (460)
T ss_pred ceeEEEEEEECcEEEEeccCCCCCCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEccCCCCCCCCCCEEEeCCCccEEEcC
Confidence 4799999999999999998889999999995 233 7899999999999999999999999 89999999999999999
Q ss_pred cccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCC
Q 010179 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (516)
Q Consensus 95 ~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~ 174 (516)
++|||||||++|||||+.+.... .
T Consensus 82 ~~lLGRVvD~~G~PlD~~~~i~~---------------~----------------------------------------- 105 (460)
T PRK04196 82 EDMLGRIFDGLGRPIDGGPEIIP---------------E----------------------------------------- 105 (460)
T ss_pred cccccCEECccCCCccCCCCCCC---------------C-----------------------------------------
Confidence 99999999999999998531100 0
Q ss_pred CCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCCC
Q 010179 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (516)
Q Consensus 175 ~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~ 253 (516)
.+||+.. ++++++|.++++||.||||+||+|+|||||||++|||+
T Consensus 106 ----------------------------------~~~~i~~~ap~~l~R~~i~epl~TGi~~ID~l~pig~GQR~gIfgg 151 (460)
T PRK04196 106 ----------------------------------KRLDINGAPINPVAREYPEEFIQTGISAIDGLNTLVRGQKLPIFSG 151 (460)
T ss_pred ----------------------------------ccCcccCCCCChhhcCCCCccccCCeEEEeccCcccCCCEEEeeCC
Confidence 1345533 44578999999999999999999999999999999999
Q ss_pred CCCCchHhHHHhhhccCCC------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHH
Q 010179 254 FGCGKTVISQALSKYSNSD------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (516)
Q Consensus 254 ~g~GKT~Ll~~ia~~~~~d------~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~ 327 (516)
+|+|||+|+.||++++++| ++||++||||+|||+||+++| .+.++|+|||+|++|||+||.+|+
T Consensus 152 ~G~GKs~L~~~ia~~~~~d~~~~~~v~V~~~iGeRgrEv~e~~~~~----------~~~~~l~rtvvV~atsd~p~~~R~ 221 (460)
T PRK04196 152 SGLPHNELAAQIARQAKVLGEEENFAVVFAAMGITFEEANFFMEDF----------EETGALERSVVFLNLADDPAIERI 221 (460)
T ss_pred CCCCccHHHHHHHHhhhhccCCCceEEEEEEeccccHHHHHHHHHH----------HhcCCcceEEEEEEcCCCCHHHHH
Confidence 9999999999999999888 899999999999999999985 466889999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCc
Q 010179 328 ASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGS 406 (516)
Q Consensus 328 ~a~~~a~tiAEyfr-d~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GS 406 (516)
+++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+++ .++||
T Consensus 222 ~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~gYP~~vf~~l~~LlERaG~~~-----~~~GS 296 (460)
T PRK04196 222 LTPRMALTAAEYLAFEKGMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIK-----GKKGS 296 (460)
T ss_pred HHHHHHHHHHHHHHHhcCCcEEEEEcChHHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHHhhcCC-----CCCee
Confidence 99999999999999 7999999999999999999999999999999999999999999999999999974 25899
Q ss_pred eeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhh-hhhhcCCHHHHHHHHHHHHH
Q 010179 407 VTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE-SFYEQFDPDFINIRTKAREV 485 (516)
Q Consensus 407 IT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~-~~~~~~~~~~~~~~~~~r~~ 485 (516)
||+|+||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+.+- .++ ..++|.+++.+++..
T Consensus 297 ITai~~V~~~gdD~~dpI~d~~~sI~DG~ivLsr~La~~g~~PAIDvl~SvSR~~~~~~~~~~--~~~~~~~~a~~l~~~ 374 (460)
T PRK04196 297 ITQIPILTMPDDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPIDVLPSLSRLMKDGIGEGK--TREDHKDVANQLYAA 374 (460)
T ss_pred eEEEEEEEcCCCCCCCchhhhhhhhcceEEEEcHHHHhCCCCCccCCccchhhhccccCCccc--CcHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998761 122 239999999999999
Q ss_pred HHhhhhHHHHHH-cCCCc
Q 010179 486 LQREDDLNEIVQ-VGYLW 502 (516)
Q Consensus 486 L~~y~e~~~li~-~G~~~ 502 (516)
|++|++++++.+ +|.+.
T Consensus 375 y~~~~~l~~~~~~~G~~~ 392 (460)
T PRK04196 375 YARGKDLRELAAIVGEEA 392 (460)
T ss_pred HHHHHHHHHHHHhcCCCc
Confidence 999999999998 57554
No 13
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=100.00 E-value=9.8e-104 Score=845.06 Aligned_cols=392 Identities=27% Similarity=0.362 Sum_probs=365.8
Q ss_pred CccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCe
Q 010179 2 PSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (516)
Q Consensus 2 ~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~ 81 (516)
.+.+++++++|......+.+|+|++|.|+++++.|++++++||+|+|. +++.|||++++++.+.+++|++++||+.|+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~G~V~~v~g~i~~v~gl~~~~~ge~~~i~-~~~~g~V~~l~~~~v~~~~l~~~~gi~~G~~ 87 (502)
T PRK13343 9 LARIRQRIARYEPQPDAREIGRVESVGDGIAFVSGLPDAALDELLRFE-GGSRGFAFNLEEELVGAVLLDDTADILAGTE 87 (502)
T ss_pred HHHHHHHHhcCCCcceeEEeeEEEEEeCCEEEEeCCCCCCCCCEEEEC-CCcEEEEEEecCCeEEEEEeeCCCCCCCCCE
Confidence 357889999999998889999999999999999998899999999996 4489999999999999999999999999999
Q ss_pred EEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecc
Q 010179 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (516)
Q Consensus 82 V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~ 161 (516)
|.+||++++||+|++|||||+|++|||||+.+.. ..
T Consensus 88 V~~tg~~~~vpvg~~llGRVid~lG~piDg~~~i---------------~~----------------------------- 123 (502)
T PRK13343 88 VRRTGRVLEVPVGDGLLGRVIDPLGRPLDGGGPL---------------QA----------------------------- 123 (502)
T ss_pred eEecCCcceeecCHHhcCCEECCCCCcccCCCCC---------------CC-----------------------------
Confidence 9999999999999999999999999999985311 00
Q ss_pred ccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCcccccccccccccc
Q 010179 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALF 240 (516)
Q Consensus 162 ~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~ 240 (516)
.++||+.. ++++++|.++++||+||||+||+|+
T Consensus 124 ----------------------------------------------~~~~~i~~~ap~~~~R~~v~epl~TGIkaID~l~ 157 (502)
T PRK13343 124 ----------------------------------------------TARRPLERPAPAIIERDFVTEPLQTGIKVVDALI 157 (502)
T ss_pred ----------------------------------------------CceecccCCCcChhhcCCCCcccccCCceecccc
Confidence 02456644 3447899999999999999999999
Q ss_pred ccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~t 318 (516)
|||||||++|||++|+|||+| +.+|+|++++|+ |||++||||++||+||++++ .+.++|+|||||++|
T Consensus 158 pigrGQR~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IGer~rev~e~~~~l----------~~~~~l~~tvvV~at 227 (502)
T PRK13343 158 PIGRGQRELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIGQKASAVARVIETL----------REHGALEYTTVVVAE 227 (502)
T ss_pred ccccCCEEEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEeccChHHHHHHHHHH----------HhcCccceeEEEEec
Confidence 999999999999999999999 689999999998 69999999999999999974 578899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC
Q 010179 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398 (516)
Q Consensus 319 sd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~ 398 (516)
+|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++.
T Consensus 228 sd~~~~~r~~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A~A~REisL~l~epPgr~gYP~~vf~~~srLlERAg~~~~- 306 (502)
T PRK13343 228 ASDPPGLQYLAPFAGCAIAEYFRDQGQDALIVYDDLSKHAAAYRELSLLLRRPPGREAYPGDIFYLHSRLLERAAKLSP- 306 (502)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhCCCCEEEEecchHHHHHHHHHHHHhcCCCCCcCCcCcchHhhhHHHHHhhccCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999752
Q ss_pred CCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHH
Q 010179 399 GGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINI 478 (516)
Q Consensus 399 ~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~ 478 (516)
..++||||++++|++++||++|||+|+++||+||||+|||+||++||||||||+.|+||+|..+ .+++|+++
T Consensus 307 --~~~gGSITal~~V~~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRv~~~~------~~~~~~~~ 378 (502)
T PRK13343 307 --ELGGGSLTALPIIETLAGELSAYIPTNLISITDGQIYLDSDLFAAGQRPAVDVGLSVSRVGGKA------QHPAIRKE 378 (502)
T ss_pred --CCCCcceEEEEEEEcCCCCCCCcchhhhhcccceEEEECHHHHhCCCCCccCCccchhccCccc------cCHHHHHH
Confidence 1257999999999999999999999999999999999999999999999999999999999988 88999999
Q ss_pred HHHHHHHHHhhhhHHHHHHcCCCcc
Q 010179 479 RTKAREVLQREDDLNEIVQVGYLWS 503 (516)
Q Consensus 479 ~~~~r~~L~~y~e~~~li~~G~~~~ 503 (516)
+.++|.+|++|+|+++++++|.+.+
T Consensus 379 a~~lr~~la~y~e~e~~~~~G~~ld 403 (502)
T PRK13343 379 SGRLRLDYAQFLELEAFTRFGGLLD 403 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999998754
No 14
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=100.00 E-value=1.9e-103 Score=835.90 Aligned_cols=368 Identities=29% Similarity=0.462 Sum_probs=342.3
Q ss_pred eeeEEEEEECceEEEEeCC--CCccccEEEEc---CCceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCcceeec
Q 010179 20 EYGYVRKVSGPVVIADGMN--GAAMYELVRVG---HDNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~--~~~iGE~v~I~---~~~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpv 93 (516)
.+|+|++|.|++++++|+. .+++||+|.|. ++.+.|||++ |+++.+.+|+|++++||++|+.|.+||++++||+
T Consensus 2 ~~G~V~~i~g~~v~~~~~~~~~~~ige~~~i~~~~~~~~~~EVv~~~~~~~~~~~~~~~~~gi~~G~~V~~tg~~~~v~v 81 (463)
T PRK09280 2 NTGKIVQVIGPVVDVEFPRGELPKIYNALEVEKGDGKKLVLEVAQHLGDGVVRTIAMGSTDGLVRGMEVIDTGAPISVPV 81 (463)
T ss_pred CccEEEEEEccEEEEEeCCCCCccccCEEEEEeCCCCeEEEEeeEEecCCeEEEEEecCccCCCCCCEEEeCCCceEEEc
Confidence 4699999999999999862 24999999993 4468999999 9999999999999999999999999999999999
Q ss_pred CcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCC
Q 010179 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (516)
Q Consensus 94 G~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~ 173 (516)
|++|||||||++|||||+.+ ++.
T Consensus 82 g~~lLGRViD~~G~pld~~~---------------~~~------------------------------------------ 104 (463)
T PRK09280 82 GKATLGRIFNVLGEPIDEKG---------------PIG------------------------------------------ 104 (463)
T ss_pred ChhhcCCEEeeeccccCCCC---------------CcC------------------------------------------
Confidence 99999999999999999742 110
Q ss_pred CCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccccccccCCccccCC
Q 010179 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (516)
Q Consensus 174 ~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g 252 (516)
..++||++.++| +++|.++++||.||||+||+|+|||||||++|||
T Consensus 105 ---------------------------------~~~~~pi~~~~~~~~~R~~~~~~l~TGiraID~l~pigkGQR~gIfa 151 (463)
T PRK09280 105 ---------------------------------AEERWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLFG 151 (463)
T ss_pred ---------------------------------ccceecccCCCCChHHhCCccceeccCCeeecccCCcccCCEEEeec
Confidence 113688877665 7899999999999999999999999999999999
Q ss_pred CCCCCchHhHHHhhhccCCC---EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHH
Q 010179 253 AFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (516)
Q Consensus 253 ~~g~GKT~Ll~~ia~~~~~d---~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a 329 (516)
++|+|||+|++||+++..+| ++||++||||+|||+||++++ .+.+.|+|||+|+||||+||.+|+++
T Consensus 152 ~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~----------~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 152 GAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHH
Confidence 99999999999999887666 999999999999999999985 45688999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCcee
Q 010179 330 IYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVT 408 (516)
Q Consensus 330 ~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT 408 (516)
+|+|+|+|||||| ||+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~-------~~GSIT 294 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITST-------KKGSIT 294 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHHHHHHHHHHhcCCCCcccCcCchHHHHHHHHHHHhcCC-------CCCcee
Confidence 9999999999999 99999999999999999999999999999999999999999999999999973 589999
Q ss_pred EEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccch-hhhhhhhhcCCHHHHHHHHHHHHHHH
Q 010179 409 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQ 487 (516)
Q Consensus 409 ~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~ 487 (516)
+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+ ++++|++++.++|++|+
T Consensus 295 ai~tVl~~gdD~~dPI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~------~~~~~~~~a~~~r~~la 368 (463)
T PRK09280 295 SVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAELGIYPAVDPLDSTSRILDPLI------VGEEHYDVAREVQQILQ 368 (463)
T ss_pred EEEEEECcCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCccCCcccccccccccc------CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 454 78999999999999999
Q ss_pred hhhhHHHHHHcCC
Q 010179 488 REDDLNEIVQVGY 500 (516)
Q Consensus 488 ~y~e~~~li~~G~ 500 (516)
+|+|+++|+++|.
T Consensus 369 ~y~e~e~li~i~g 381 (463)
T PRK09280 369 RYKELQDIIAILG 381 (463)
T ss_pred HhHHHHHHHHhhC
Confidence 9999999999543
No 15
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=100.00 E-value=2.7e-103 Score=836.94 Aligned_cols=377 Identities=25% Similarity=0.379 Sum_probs=344.3
Q ss_pred eeeEEEEEECceEEEEeCCCCccccEEEEc--CCc-eEEEEEEEeCCeEEEEEcccccCCCCCCe-EEEcCCcceeecCc
Q 010179 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDN-LIGEIIRLEGDSATIQVYEETAGLMVNDP-VLRTHKPLSVELGP 95 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~~-l~gEVv~~~~d~v~l~~~~~t~GI~~G~~-V~~tg~~lsVpvG~ 95 (516)
.|++|++|.|++++++|+.++++||+|+|. ++. +.|||++|+++++.+|+|++++||++|+. |.+||++++||||+
T Consensus 1 ~y~~v~~i~g~iv~v~g~~~~~~ge~~~i~~~~~~~~~geVv~~~~~~~~l~~~~~t~gi~~g~~~V~~tg~~~~v~vg~ 80 (458)
T TIGR01041 1 EYSTITEIAGPLVFVEGVEPVAYNEIVEIETPDGEKRRGQVLDSSEGLAVVQVFEGTTGLDPTGTKVRFTGETLKLPVSE 80 (458)
T ss_pred CccEEEEEEccEEEEEccCCCCcCCEEEEEcCCCcEEEEEEEEEECCEEEEEEecCCcCcCCCCcEEEECCCceEEEcCh
Confidence 479999999999999998889999999994 233 78999999999999999999999999987 99999999999999
Q ss_pred ccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCC
Q 010179 96 GILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175 (516)
Q Consensus 96 gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~ 175 (516)
+|||||||++|||||+.+. +...
T Consensus 81 ~lLGRViD~~G~plD~~~~---------------~~~~------------------------------------------ 103 (458)
T TIGR01041 81 DMLGRILNGSGEPIDGGPE---------------IVPD------------------------------------------ 103 (458)
T ss_pred hhccCEEccCCcccCCCCC---------------CCcc------------------------------------------
Confidence 9999999999999998421 1000
Q ss_pred CceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCC-CCcccccCCCccccccccccccccccccCCccccCCCC
Q 010179 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAF 254 (516)
Q Consensus 176 g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~ 254 (516)
.+||+..+ +++++|.++++||+||||+||+|+|||||||++|||++
T Consensus 104 ---------------------------------~~~~i~~~~~~~~~R~~~~~~l~TGi~~ID~l~pig~GQR~gIfgg~ 150 (458)
T TIGR01041 104 ---------------------------------ERRDINGAPINPYAREYPEEFIQTGISAIDGMNTLVRGQKLPIFSGS 150 (458)
T ss_pred ---------------------------------ceeeccCCCCChhhcCCCCCcCCCCeEEEEccCccccCCEEEeeCCC
Confidence 13555433 34789999999999999999999999999999999999
Q ss_pred CCCchHhHHHhhhccCCC------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHH
Q 010179 255 GCGKTVISQALSKYSNSD------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328 (516)
Q Consensus 255 g~GKT~Ll~~ia~~~~~d------~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~ 328 (516)
|+|||+|+.||++|+++| ++||++||||+|||+||+++| .++++|+|||+|+||||+||.+|++
T Consensus 151 G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERgrEv~efi~~~----------~~~~~l~rtvvv~atsd~p~~~R~~ 220 (458)
T TIGR01041 151 GLPHNELAAQIARQATVRGEESEFAVVFAAMGITYEEANFFMKDF----------EETGALERAVVFLNLADDPAVERIV 220 (458)
T ss_pred CCCHHHHHHHHHHhhcccCCCCceEEEEEEccccchHHHHHHHHH----------HhcCCcceEEEEEECCCCCHHHHHH
Confidence 999999999999999888 999999999999999999985 5677899999999999999999999
Q ss_pred HHHHHHHHHHHHH-HCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCce
Q 010179 329 SIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSV 407 (516)
Q Consensus 329 a~~~a~tiAEyfr-d~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSI 407 (516)
++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++|||||+|+.|++||||||+++ .++|||
T Consensus 221 a~~~a~tiAEyfr~d~G~~VLli~DslTR~A~A~REIsl~~gepP~~~GYP~svfs~l~~LlERaG~~~-----~~~GSI 295 (458)
T TIGR01041 221 TPRMALTAAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRVK-----GKKGSI 295 (458)
T ss_pred HHHHHHHHHHHHHHccCCcEEEEEcChhHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccCC-----CCCcce
Confidence 9999999999999 7999999999999999999999999999999999999999999999999999874 258999
Q ss_pred eEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhh-hhhhhcCCHHHHHHHHHHHHHH
Q 010179 408 TIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL-ESFYEQFDPDFINIRTKAREVL 486 (516)
Q Consensus 408 T~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l-~~~~~~~~~~~~~~~~~~r~~L 486 (516)
|+|+||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+.. .+|+ ++++|++++.+++..|
T Consensus 296 Tai~tV~~~gdD~~dPI~d~~~sIlDGhivLsr~La~~G~yPAIDvl~SvSR~~~~~ig~~~--~~~~~~~~a~~l~~~y 373 (458)
T TIGR01041 296 TQMPILTMPGDDITHPIPDLTGYITEGQIVLSRELHRKGIYPPINVLPSLSRLMKDGIGEGK--TREDHKDVSDQLYAAY 373 (458)
T ss_pred EEEEEEEcCCCCCCCchHHhhhhhcceEEEEcHHHHhCCCCCccCCccchhhcccccccccc--cCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999862 2233 7899999999888888
Q ss_pred HhhhhHHHHHH-cCCCcc
Q 010179 487 QREDDLNEIVQ-VGYLWS 503 (516)
Q Consensus 487 ~~y~e~~~li~-~G~~~~ 503 (516)
+++++++++.+ +|.|..
T Consensus 374 ~~~~~L~~i~~~~G~d~l 391 (458)
T TIGR01041 374 AEGRDLRGLVAIVGEEAL 391 (458)
T ss_pred HHHHHHHHHHHhcCCCcC
Confidence 88888888888 487543
No 16
>PRK06936 type III secretion system ATPase; Provisional
Probab=100.00 E-value=4.5e-103 Score=829.33 Aligned_cols=380 Identities=29% Similarity=0.403 Sum_probs=349.9
Q ss_pred cccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcC---C-ceEEEEEEEeCCeEEEEEcccccCCCCC
Q 010179 4 VYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH---D-NLIGEIIRLEGDSATIQVYEETAGLMVN 79 (516)
Q Consensus 4 ~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~---~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G 79 (516)
.|.++++++.. .+.+|+|++|.|+++++.+ +++++||+|+|.. + .+.+||++|+++++++|||++++||++|
T Consensus 10 ~~~~~~~~~~~---~~~~G~V~~v~g~~v~~~~-~~~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g 85 (439)
T PRK06936 10 HLRHAIVGSRL---IQIRGRVTQVTGTILKAVV-PGVRIGELCYLRNPDNSLSLQAEVIGFAQHQALLTPLGEMYGISSN 85 (439)
T ss_pred HHHHHHhcCCc---cceeeEEEEEECcEEEEEe-CCCCCCCEEEEecCCCCcceEEEEEEEECCeEEEEecCCCCCCCCC
Confidence 34555555443 5788999999999999986 5899999999952 2 4899999999999999999999999999
Q ss_pred CeEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeee
Q 010179 80 DPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVF 159 (516)
Q Consensus 80 ~~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~ 159 (516)
++|++||++++||+|++|||||||++|||||+.+. +..
T Consensus 86 ~~V~~tg~~~~v~vg~~lLGRV~d~~G~plD~~~~---------------~~~--------------------------- 123 (439)
T PRK06936 86 TEVSPTGTMHQVGVGEHLLGRVLDGLGQPFDGGHP---------------PEP--------------------------- 123 (439)
T ss_pred CEEEeCCCceEEEeCccccCCEECCCCCccCCCCC---------------CCc---------------------------
Confidence 99999999999999999999999999999998421 100
Q ss_pred ccccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCcccccccccccc
Q 010179 160 ENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDA 238 (516)
Q Consensus 160 e~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~ 238 (516)
.++||+.. |+++++|.++++||+||+|+||.
T Consensus 124 ------------------------------------------------~~~~pi~~~~p~p~~R~~i~~~l~TGi~vid~ 155 (439)
T PRK06936 124 ------------------------------------------------AAWYPVYADAPAPMSRRLIETPLSLGVRVIDG 155 (439)
T ss_pred ------------------------------------------------cceeeccCCCCChHHccccCCCCcCCcceeee
Confidence 01356644 33478999999999999999999
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~t 318 (516)
++|+++|||++|||++|+|||||+++|+++.++|++||++||||+|||+||+++. .+++.|+|||+|++|
T Consensus 156 l~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~dv~V~~liGERgrEv~ef~~~~----------l~~~~l~rtvvv~at 225 (439)
T PRK06936 156 LLTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVDVTVLALIGERGREVREFIESD----------LGEEGLRKAVLVVAT 225 (439)
T ss_pred eEEecCCCEEEEECCCCCChHHHHHHHhcCCCCCEEEEEEEccCcHHHHHHHHHH----------hcccccceeEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999762 345669999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC
Q 010179 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398 (516)
Q Consensus 319 sd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~ 398 (516)
||+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 226 sd~p~~~R~~a~~~a~tiAEyfrd~G~~Vll~~DslTR~A~A~REisl~~gepP~~~gyp~svfs~l~~l~ERaG~~--- 302 (439)
T PRK06936 226 SDRPSMERAKAGFVATSIAEYFRDQGKRVLLLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFAALPRLMERAGQS--- 302 (439)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHH
Q 010179 399 GGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINI 478 (516)
Q Consensus 399 ~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~ 478 (516)
++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|+++
T Consensus 303 ----~~GSIT~i~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~ 372 (439)
T PRK06936 303 ----DKGSITALYTVLVEGDDMTEPVADETRSILDGHIILSRKLAAANHYPAIDVLRSASRVMNQI------VSKEHKTW 372 (439)
T ss_pred ----CCcceeeeEEEEccCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCCcccccccchhh------CCHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988 89999999
Q ss_pred HHHHHHHHHhhhhHHHHHHcCC
Q 010179 479 RTKAREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 479 ~~~~r~~L~~y~e~~~li~~G~ 500 (516)
+.++|++|++|+|+++++++|.
T Consensus 373 a~~~r~~la~y~e~e~li~iG~ 394 (439)
T PRK06936 373 AGRLRELLAKYEEVELLLQIGE 394 (439)
T ss_pred HHHHHHHHHcchHHHHHHHhcC
Confidence 9999999999999999999976
No 17
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.3e-102 Score=824.29 Aligned_cols=380 Identities=27% Similarity=0.419 Sum_probs=350.7
Q ss_pred ccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CCceEEEEEEEeCCeEEEEEcccccCCCCCCeE
Q 010179 5 YGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPV 82 (516)
Q Consensus 5 ~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V 82 (516)
+++++.+|. .+.+|+|++|.|+++++.|+ .+++||+|.|+ ++.+.|||++|+++++.+|||++++||+.|++|
T Consensus 14 ~~~~~~~~~----~~~~G~v~~v~g~~i~~~g~-~~~ige~~~i~~~~~~~~~EVv~~~~~~~~l~~~~~~~gi~~g~~V 88 (444)
T PRK08972 14 YKVKVPPFR----AVASGKLVRVVGLTLEATGC-RAPVGSLCSIETMAGELEAEVVGFDGDLLYLMPIEELRGVLPGARV 88 (444)
T ss_pred HhhccCCCC----cceeeEEEEEEcCEEEEeeC-CCCCCCEEEEecCCCcEEEEEEEecCCEEEEEECCCcCCCCCCCEE
Confidence 455555443 56889999999999999996 69999999994 345899999999999999999999999999999
Q ss_pred EEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccc
Q 010179 83 LRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (516)
Q Consensus 83 ~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~ 162 (516)
.+||++++||+|++|||||||++|+|||+.++ ++..
T Consensus 89 ~~tg~~~~v~vg~~llGRVid~~G~plD~~~~---------------~~~~----------------------------- 124 (444)
T PRK08972 89 TPLGEQSGLPVGMSLLGRVIDGVGNPLDGLGP---------------IYTD----------------------------- 124 (444)
T ss_pred EECCCccEEEcChhhcCCeECCCCCCcCCCCC---------------CCCC-----------------------------
Confidence 99999999999999999999999999998531 1100
Q ss_pred cccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccccc
Q 010179 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFP 241 (516)
Q Consensus 163 ~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~p 241 (516)
++||+..++| +++|.++++||+||+|+||.++|
T Consensus 125 ----------------------------------------------~~~~i~~~~~~p~~R~~i~e~l~TGi~aID~ll~ 158 (444)
T PRK08972 125 ----------------------------------------------QRASRHSPPINPLSRRPITEPLDVGVRAINAMLT 158 (444)
T ss_pred ----------------------------------------------ccccccCCCCChhhcCCCCCcccccceeecceEE
Confidence 2355544443 68999999999999999999999
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~ 321 (516)
+++|||++|||++|+|||||+.+|+++.++|++||++||||+|||+||++++ .+++.|+|||+|++|||+
T Consensus 159 i~~GqrigI~G~sG~GKSTLL~~I~~~~~~dv~Vi~lIGER~rEv~efi~~~----------l~~~~l~rtvvv~atsd~ 228 (444)
T PRK08972 159 VGKGQRMGLFAGSGVGKSVLLGMMTRGTTADVIVVGLVGERGREVKEFIEEI----------LGEEGRARSVVVAAPADT 228 (444)
T ss_pred EcCCCEEEEECCCCCChhHHHHHhccCCCCCEEEEEEEcCChHHHHHHHHHh----------hccCCcccEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999974 456779999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCC
Q 010179 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGP 401 (516)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~ 401 (516)
||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+..
T Consensus 229 p~~~R~~a~~~A~tiAEyfrd~G~~VLl~~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~L~ERAg~~~----- 303 (444)
T PRK08972 229 SPLMRLKGCETATTIAEYFRDQGLNVLLLMDSLTRYAQAQREIALAVGEPPATKGYPPSVFAKLPALVERAGNGG----- 303 (444)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHHhcCCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHH
Q 010179 402 ERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTK 481 (516)
Q Consensus 402 ~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~ 481 (516)
+++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.+
T Consensus 304 ~~~GSITai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~i------~~~~h~~~a~~ 377 (444)
T PRK08972 304 PGQGSITAFYTVLTEGDDLQDPIADASRAILDGHIVLSRELADSGHYPAIDIEASISRVMPMV------ISEEHLEAMRR 377 (444)
T ss_pred CCCceeeeEEEEEEeCCCCCcchHHhhhhhcceEEEEcHHHHhCCCCCeeCCccccccCchhc------CcHHHHHHHHH
Confidence 257999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred HHHHHHhhhhHHHHHHcCC
Q 010179 482 AREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 482 ~r~~L~~y~e~~~li~~G~ 500 (516)
+|++|++|+++++||++|.
T Consensus 378 ~r~~ls~y~~~e~li~~g~ 396 (444)
T PRK08972 378 VKQVYSLYQQNRDLISIGA 396 (444)
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999764
No 18
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=100.00 E-value=8e-103 Score=833.17 Aligned_cols=368 Identities=28% Similarity=0.425 Sum_probs=342.3
Q ss_pred eeeEEEEEECceEEEEeCCC--CccccEEEEcC--CceEEEEEEE-eCCeEEEEEcccccCCCCCCeEEEcCCcceeecC
Q 010179 20 EYGYVRKVSGPVVIADGMNG--AAMYELVRVGH--DNLIGEIIRL-EGDSATIQVYEETAGLMVNDPVLRTHKPLSVELG 94 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~--~~iGE~v~I~~--~~l~gEVv~~-~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG 94 (516)
+.|+|++|.|++++++|+.+ +++||+|.|.. +.+.+||+++ +++.+.+++|++++||++|+.|.+||++++||+|
T Consensus 2 ~~G~V~~i~g~vi~v~g~~~~~~~ige~~~i~~~~~~~~~eVv~~l~~~~v~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (461)
T PRK12597 2 MIGRIIKIRGDVVDVEFEEGALPPINQALTVHDDGGPTLLEVKQHLDETTVRAIALGSTSGLARGDEVRNTGGPIEVPVG 81 (461)
T ss_pred CccEEEEEECcEEEEEECCCCCcCccCEEEEecCCCcEEEEEEEEcCCCeEEEEEecCccCCCCCCEEEeCCCceEEEcC
Confidence 46999999999999999865 99999999953 4588999999 9999999999999999999999999999999999
Q ss_pred cccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCC
Q 010179 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (516)
Q Consensus 95 ~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~ 174 (516)
++|||||||++|+|||+.+. ++.
T Consensus 82 ~~llGRVid~~G~plD~~~~---------------~~~------------------------------------------ 104 (461)
T PRK12597 82 EAVLGRLLDVLGEPLDGGPP---------------LPA------------------------------------------ 104 (461)
T ss_pred hhhcCCEEeeccccccCCCC---------------CCC------------------------------------------
Confidence 99999999999999998421 110
Q ss_pred CCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCCC
Q 010179 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (516)
Q Consensus 175 ~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~ 253 (516)
.++||+.. |+++++|.++++||+||||+||+|+|||||||+||||+
T Consensus 105 ---------------------------------~~~~~i~~~~p~~~~R~~~~e~l~TGir~ID~l~pigkGQR~gIfa~ 151 (461)
T PRK12597 105 ---------------------------------EERRPIHSTIPPLAEQDTSTEILETGIKVIDLLCPIAKGGKTGLFGG 151 (461)
T ss_pred ---------------------------------cceeeccCCCcChhhcCCcCcceecCCeeecccCccccCCEEEeecC
Confidence 02466644 44578999999999999999999999999999999999
Q ss_pred CCCCchHhHHHhhhccC---CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 254 FGCGKTVISQALSKYSN---SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 254 ~g~GKT~Ll~~ia~~~~---~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
+|+|||+|+.||+++.. +|++||++||||+|||+||++++ .++++|+||++|++|||+||.+|++++
T Consensus 152 ~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~----------~~~~~l~rsvvv~atsd~~~~~R~~a~ 221 (461)
T PRK12597 152 AGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEM----------KESGVLDKTVMVYGQMNEPPGARMRVV 221 (461)
T ss_pred CCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHH----------HhcCCcceeEEEecCCCCCHHHHHHHH
Confidence 99999999999998876 89999999999999999999974 577899999999999999999999999
Q ss_pred HHHHHHHHHHHHC-CCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeE
Q 010179 331 YTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTI 409 (516)
Q Consensus 331 ~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~ 409 (516)
|+|+|+||||||+ |+||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||+
T Consensus 222 ~~a~tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~l~ERag~~-------~~GSIT~ 294 (461)
T PRK12597 222 LTGLTIAEYLRDEEKEDVLLFIDNIFRFVQAGSEVSGLLGRMPSRVGYQPTLASEVAELQERIAST-------KNGSITS 294 (461)
T ss_pred HHHHHHHHHHHHhcCCceEEEeccchHHHHHHHHHHHhcCCCCCcCCcCchhHHHHHHHHHhhcCC-------CCccccE
Confidence 9999999999998 9999999999999999999999999999999999999999999999999863 5899999
Q ss_pred EEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccch-hhhhhhhhcCCHHHHHHHHHHHHHHHh
Q 010179 410 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQR 488 (516)
Q Consensus 410 i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~~ 488 (516)
|+||++|+||++|||+|++++||||||+|||+||++||||||||++|+||+| +.+ ++++|+++++++|++|++
T Consensus 295 i~tVl~~~dD~~dPI~d~~~~ilDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i------~~~~h~~~a~~~r~~la~ 368 (461)
T PRK12597 295 IQAVYVPADDLTDPAAVAIFSHLDSTVVLSRAQAAKGIYPAIDPLASSSNLLDPLV------VGERHYDAAIEVKRILQR 368 (461)
T ss_pred EEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCcccccccccccc------CCHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988 555 799999999999999999
Q ss_pred hhhHHHHHHcCC
Q 010179 489 EDDLNEIVQVGY 500 (516)
Q Consensus 489 y~e~~~li~~G~ 500 (516)
|+|+++|+++|.
T Consensus 369 y~e~e~li~i~g 380 (461)
T PRK12597 369 YKELEDVIAILG 380 (461)
T ss_pred hhhHHHHHHHcC
Confidence 999999999444
No 19
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=100.00 E-value=4.8e-102 Score=823.09 Aligned_cols=366 Identities=31% Similarity=0.477 Sum_probs=340.9
Q ss_pred eeEEEEEECceEEEEeCCCCccccEE---EEcC--C-ceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCcceeec
Q 010179 21 YGYVRKVSGPVVIADGMNGAAMYELV---RVGH--D-NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (516)
Q Consensus 21 ~G~V~~I~G~vv~a~Gl~~~~iGE~v---~I~~--~-~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpv 93 (516)
+|+|++|.|.++++.|+ .+.+|++| .|.. + .+.+||++ |+++.+.++||+++.||+.|+.|.+|++++++|+
T Consensus 2 ~G~v~~v~g~~ie~~~~-~~~ig~~~~~l~i~~~~~~~~~~eVv~~~~~~~v~l~~l~~~~gi~~G~~V~~t~~~~~i~v 80 (461)
T TIGR01039 2 KGKVVQVIGPVVDVEFE-QGELPRIYNALKVQNRAESELTLEVAQHLGDDTVRTIAMGSTDGLVRGLEVIDTGAPISVPV 80 (461)
T ss_pred ccEEEEEEeeEEEEEEC-CCCCcchheEEEEecCCCceEEEEeeeeeCCCeEEEEEccCcccCCCCCEEEeCCCceEEEc
Confidence 59999999999999986 78999999 8832 2 48999999 9999999999999999999999999999999999
Q ss_pred CcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCC
Q 010179 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (516)
Q Consensus 94 G~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~ 173 (516)
|++|||||+|++|+|||+.+. + +.
T Consensus 81 g~~lLGRViD~~G~pid~~~~---------------~----------------------------------------~~- 104 (461)
T TIGR01039 81 GKETLGRIFNVLGEPIDEKGP---------------I----------------------------------------PA- 104 (461)
T ss_pred ChhhcCCEEccCCcccCCCCC---------------C----------------------------------------CC-
Confidence 999999999999999997421 0 00
Q ss_pred CCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccccccccCCccccCC
Q 010179 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (516)
Q Consensus 174 ~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g 252 (516)
.++||++.++| +++|.++++||.||||+||+|+|||||||++|||
T Consensus 105 ----------------------------------~~~~pi~~~~p~~~~R~~~~e~l~TGiraID~l~pig~GQr~~If~ 150 (461)
T TIGR01039 105 ----------------------------------KERWPIHRKAPSFEEQSTKVEILETGIKVIDLLAPYAKGGKIGLFG 150 (461)
T ss_pred ----------------------------------CcccccccCCCChhHcCCcccccccCceeecccCCcccCCEEEeec
Confidence 13578865555 7899999999999999999999999999999999
Q ss_pred CCCCCchHhHHHhhhccCCC---EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHH
Q 010179 253 AFGCGKTVISQALSKYSNSD---TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (516)
Q Consensus 253 ~~g~GKT~Ll~~ia~~~~~d---~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a 329 (516)
++|+|||+|++||+++..+| ++||++||||+|||+||++++ .++++|+|||+|+||||+||.+|+++
T Consensus 151 ~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~----------~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 151 GAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHH
Confidence 99999999999999887666 999999999999999999974 56789999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCcee
Q 010179 330 IYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVT 408 (516)
Q Consensus 330 ~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT 408 (516)
+|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~A~REisl~~gepP~~~GYPpsvfs~l~~L~ERag~~-------~~GSIT 293 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGELQERITST-------KTGSIT 293 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCC-------CCCcee
Confidence 9999999999999 89999999999999999999999999999999999999999999999999973 589999
Q ss_pred EEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccch-hhhhhhhhcCCHHHHHHHHHHHHHHH
Q 010179 409 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQ 487 (516)
Q Consensus 409 ~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~ 487 (516)
+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+| +.+ ++++|++++.++|++|+
T Consensus 294 ai~tVl~~gdD~~dPi~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~~------~~~~h~~~a~~~r~~la 367 (461)
T TIGR01039 294 SVQAVYVPADDLTDPAPATTFAHLDATTVLSRKIAELGIYPAVDPLDSTSRLLDPSV------VGEEHYDVARGVQQILQ 367 (461)
T ss_pred EEEEEEccCCCCCCccHHHHHHhcceEEEECHHHHhCCCCCCcCCccccccccCCcc------CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998 554 79999999999999999
Q ss_pred hhhhHHHHHHcCC
Q 010179 488 REDDLNEIVQVGY 500 (516)
Q Consensus 488 ~y~e~~~li~~G~ 500 (516)
+|+|+++|+++|.
T Consensus 368 ~y~e~~~li~i~g 380 (461)
T TIGR01039 368 RYKELQDIIAILG 380 (461)
T ss_pred hhhHHHHHHHHhC
Confidence 9999999999544
No 20
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=100.00 E-value=4.1e-101 Score=819.22 Aligned_cols=377 Identities=24% Similarity=0.302 Sum_probs=350.5
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCccc
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGI 97 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gL 97 (516)
....|+|++|.|++++++|++++++||+|.|. ++..|||++++++++.+++|++++||+.|+.|++||++++||+|++|
T Consensus 4 ~~~~G~V~~v~~~ii~v~Gl~~~~~ge~~~i~-~~~~g~vi~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~l 82 (485)
T CHL00059 4 IVNTGTVLQVGDGIARIYGLDEVMAGELVEFE-DGTIGIALNLESNNVGVVLMGDGLMIQEGSSVKATGKIAQIPVSEAY 82 (485)
T ss_pred eeeeEEEEEEeccEEEEeccccCCcCCEEEEC-CCCEEEEEEEcCCEEEEEEeeCCCCCCCCCEEEECCCcceEEcCHhh
Confidence 45789999999999999999889999999996 44899999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCc
Q 010179 98 LGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGK 177 (516)
Q Consensus 98 LGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~ 177 (516)
||||+|++|+|||+.+....
T Consensus 83 lGRVvd~lG~piDg~~~~~~------------------------------------------------------------ 102 (485)
T CHL00059 83 LGRVVNALAKPIDGKGEISA------------------------------------------------------------ 102 (485)
T ss_pred cCCEECCCCCeeCCCCCcCC------------------------------------------------------------
Confidence 99999999999998431100
Q ss_pred eEEecCCCCccccceEEEEEEcCeeeeeeccccccccCC-CCcccccCCCccccccccccccccccccCCccccCCCCCC
Q 010179 178 VTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGC 256 (516)
Q Consensus 178 v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~ 256 (516)
..+||+..+ +++++|.++++||+||||+||+|+|||||||++|||++|+
T Consensus 103 ------------------------------~~~~~i~~~ap~~~~R~~v~epl~TGI~aID~l~pigrGQR~~I~g~~g~ 152 (485)
T CHL00059 103 ------------------------------SESRLIESPAPGIISRRSVYEPLQTGLIAIDSMIPIGRGQRELIIGDRQT 152 (485)
T ss_pred ------------------------------CccccccCCCCCchhccCCCcccccCceeeccccccccCCEEEeecCCCC
Confidence 013555443 4478999999999999999999999999999999999999
Q ss_pred CchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHH
Q 010179 257 GKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 334 (516)
Q Consensus 257 GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~ 334 (516)
|||+| +.+|+||+++|+ |||++||||++||++|++++ .++++|+||++|++|+|+||.+|+++||+|+
T Consensus 153 GKt~Lal~~I~~q~~~dv~cV~~~IGer~rev~e~~~~l----------~~~~~l~~tvvV~atad~~~~~r~~ap~~a~ 222 (485)
T CHL00059 153 GKTAVATDTILNQKGQNVICVYVAIGQKASSVAQVVTTL----------QERGAMEYTIVVAETADSPATLQYLAPYTGA 222 (485)
T ss_pred CHHHHHHHHHHhcccCCeEEEEEEecCCchHHHHHHHHh----------hcccchhceEEEEeCCCCCHHHHHHHHHHHh
Confidence 99999 679999999998 59999999999999999974 6788999999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEe
Q 010179 335 TIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVS 414 (516)
Q Consensus 335 tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~ 414 (516)
|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++.. .++||||++|+|+
T Consensus 223 aiAEyfr~~G~~VLlv~DdlTr~A~A~REisl~l~epPgr~gYP~~vF~~~srLlERag~~~~~---~~~GSITal~~V~ 299 (485)
T CHL00059 223 ALAEYFMYRGRHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSSQ---LGEGSMTALPIVE 299 (485)
T ss_pred hHHHHHHHcCCCEEEEEcChhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhhcccCC---CCCcceEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999997521 1479999999999
Q ss_pred cCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHH
Q 010179 415 PPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNE 494 (516)
Q Consensus 415 ~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~ 494 (516)
+++||++|||+++++|||||||+|||+||++||||||||+.|+||++..+ .+++|++++.++|..|++|+|+++
T Consensus 300 ~~~dD~s~pI~~~v~sItDGqIvLsr~La~~G~~PAIDv~~SvSRvg~~a------q~~~~~~~a~~lr~~la~y~e~e~ 373 (485)
T CHL00059 300 TQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA------QIKAMKQVAGKLKLELAQFAELEA 373 (485)
T ss_pred ccCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCcccchhcCCchh------hcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988 789999999999999999999999
Q ss_pred HHHcCCCccc
Q 010179 495 IVQVGYLWSL 504 (516)
Q Consensus 495 li~~G~~~~~ 504 (516)
+++++.+.+.
T Consensus 374 ~~~~~~~~d~ 383 (485)
T CHL00059 374 FAQFASDLDK 383 (485)
T ss_pred HHHhhcCCCH
Confidence 9998776654
No 21
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=100.00 E-value=4.2e-101 Score=820.64 Aligned_cols=376 Identities=28% Similarity=0.414 Sum_probs=338.6
Q ss_pred ceeeeEEEEEECceEEEEeCCCCcc---ccEEEEcC-C------ceEEEEEEEeC-CeEEEEEcccccCCCCCCeEEEcC
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAM---YELVRVGH-D------NLIGEIIRLEG-DSATIQVYEETAGLMVNDPVLRTH 86 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~i---GE~v~I~~-~------~l~gEVv~~~~-d~v~l~~~~~t~GI~~G~~V~~tg 86 (516)
.+.+|+|++|.|.++++.|. .+.+ ||+|.+.. + .+.+||++|.+ +.+.+++|++++||+.|++|.+||
T Consensus 13 ~~~~G~V~~v~G~viev~~~-~~~iP~ig~~~~i~~~~~~~~~~~~~~EVvg~~~~~~v~~~~l~~~~gi~~G~~V~~tg 91 (494)
T CHL00060 13 EKNLGRITQIIGPVLDVAFP-PGKMPNIYNALVVKGRDTAGQEINVTCEVQQLLGNNRVRAVAMSATDGLMRGMEVIDTG 91 (494)
T ss_pred cccceEEEEEEccEEEEEec-CCCcCCcCCEEEEccCCCCCccceEEEEEEEEeCCCeEEEEeccCccCCCCCCEEEeCC
Confidence 45789999999999999986 4555 99999942 2 47899999999 999999999999999999999999
Q ss_pred CcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccc
Q 010179 87 KPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQH 166 (516)
Q Consensus 87 ~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~ 166 (516)
++++||+|++|||||||++|||||+.+. +..
T Consensus 92 ~~~~vpvg~~lLGRVid~~G~piDg~~~---------------~~~---------------------------------- 122 (494)
T CHL00060 92 APLSVPVGGATLGRIFNVLGEPVDNLGP---------------VDT---------------------------------- 122 (494)
T ss_pred CcceeecchhhcCCEEeecCcccCCCCC---------------CCC----------------------------------
Confidence 9999999999999999999999998421 100
Q ss_pred cccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccC
Q 010179 167 HVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLG 245 (516)
Q Consensus 167 ~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkG 245 (516)
.++||+. .|+++++|.++++||+||||+||+|+|||||
T Consensus 123 -----------------------------------------~~~~pi~~~~p~~~~R~~i~e~L~TGIraID~l~pigkG 161 (494)
T CHL00060 123 -----------------------------------------RTTSPIHRSAPAFIQLDTKLSIFETGIKVVDLLAPYRRG 161 (494)
T ss_pred -----------------------------------------CccccccCCCcCchhcccccceeecCceeeeccCCcccC
Confidence 0245663 3445789999999999999999999999999
Q ss_pred CccccCCCCCCCchHhHHHhhhc-cCC--CEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY-SNS--DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 322 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~-~~~--d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~ 322 (516)
||+||||++|+|||+|+.||++| +++ |++||++||||+|||+||++++.+..... .+..+++|||+|++|||+|
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~lIGERgrEv~efi~~~~~~~~~~---~~~~~~~rsvvv~atsd~p 238 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEMKESGVIN---EQNIAESKVALVYGQMNEP 238 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEEEeccCchHHHHHHHHHHhcCccc---cCcccccceEEEEECCCCC
Confidence 99999999999999999999987 544 99999999999999999999864432110 1123488999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCC-cEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCC
Q 010179 323 VAAREASIYTGITIAEYFRDMGY-NVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGP 401 (516)
Q Consensus 323 ~~~r~~a~~~a~tiAEyfrd~G~-~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~ 401 (516)
|.+|++++|+|+|+||||||+|+ ||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+.
T Consensus 239 ~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A~A~REIsl~~gepP~~~GYPpsvfs~l~~LlERaG~~------ 312 (494)
T CHL00060 239 PGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST------ 312 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHHHHHHHHHHhcCCCCCCCCcCCCHHHHhHHHHHhccCC------
Confidence 99999999999999999999986 99999999999999999999999999999999999999999999999975
Q ss_pred CCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccc-hhhhhhhhhcCCHHHHHHHH
Q 010179 402 ERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKY-STALESFYEQFDPDFINIRT 480 (516)
Q Consensus 402 ~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~-~~~l~~~~~~~~~~~~~~~~ 480 (516)
.+||||+||||++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+ ++.+ ++++|++++.
T Consensus 313 -~~GSITai~tVl~~gdD~tdPI~d~~~silDGhIvLsr~La~~G~yPAIDvl~SvSR~~~~~~------v~~~h~~~a~ 385 (494)
T CHL00060 313 -KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRI------VGEEHYETAQ 385 (494)
T ss_pred -CCCCeeEEEEEECCCCCCCCcchHhhhhhcceEEEEcHHHHhCCCCCCcCCccchhhhccccc------CCHHHHHHHH
Confidence 4799999999999999999999999999999999999999999999999999999998 5555 8999999999
Q ss_pred HHHHHHHhhhhHHHHHHcCC
Q 010179 481 KAREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 481 ~~r~~L~~y~e~~~li~~G~ 500 (516)
++|++|++|+|+++++++|.
T Consensus 386 ~~r~~la~y~e~e~li~~~g 405 (494)
T CHL00060 386 RVKQTLQRYKELQDIIAILG 405 (494)
T ss_pred HHHHHHHHhHHHHHHHHHhC
Confidence 99999999999999999444
No 22
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.9e-100 Score=808.51 Aligned_cols=375 Identities=27% Similarity=0.398 Sum_probs=347.0
Q ss_pred cCceeeeEEEEEECceEEEEeCC-CCccccEEEEcC--C-ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCccee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMN-GAAMYELVRVGH--D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~-~~~iGE~v~I~~--~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsV 91 (516)
...+.+|+|++|.|++++++|+. .+++||+|+|.. + .+.|||++|+++++++++|++++||+.|+.|.+||++++|
T Consensus 13 ~~~~~~g~v~~i~g~~i~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~v 92 (442)
T PRK08927 13 DTLVIYGRVVAVRGLLVEVAGPIHALSVGARIVVETRGGRPVPCEVVGFRGDRALLMPFGPLEGVRRGCRAVIANAAAAV 92 (442)
T ss_pred CcceeeeEEEEEEccEEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCccCCCCCCEEEeCCCccEE
Confidence 34678999999999999999974 699999999942 3 4899999999999999999999999999999999999999
Q ss_pred ecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCC
Q 010179 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (516)
Q Consensus 92 pvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~p 171 (516)
|+|++|||||||++|+|||+.+.. ...
T Consensus 93 ~vg~~llGRVid~~G~piDg~~~~---------------~~~-------------------------------------- 119 (442)
T PRK08927 93 RPSRAWLGRVVNALGEPIDGKGPL---------------PQG-------------------------------------- 119 (442)
T ss_pred ECChhhCCCEEccCCCCccCCCCC---------------CCC--------------------------------------
Confidence 999999999999999999985311 000
Q ss_pred CCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCcccc
Q 010179 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (516)
Q Consensus 172 p~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I 250 (516)
..+||+.. |+++++|.++++||+||||+||+|+|+++|||++|
T Consensus 120 ------------------------------------~~~~~i~~~~p~~~~R~~~~~~l~TGir~ID~l~~i~~Gqri~I 163 (442)
T PRK08927 120 ------------------------------------PVPYPLRAPPPPAHSRARVGEPLDLGVRALNTFLTCCRGQRMGI 163 (442)
T ss_pred ------------------------------------cccccccCCCcChHHcCCcccccccceEEEeeeeEEcCCCEEEE
Confidence 01356633 44578999999999999999999999999999999
Q ss_pred CCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 251 ~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
||++|+|||+|+++|+++.++|++||++||||+|||+||+++. .++..|+|||+|++|||+||.+|++++
T Consensus 164 ~G~sG~GKTtLL~~I~~~~~~d~~v~~~iGER~rEv~ef~~~~----------l~~~~l~rsvvv~atsd~~~~~r~~a~ 233 (442)
T PRK08927 164 FAGSGVGKSVLLSMLARNADADVSVIGLIGERGREVQEFLQDD----------LGPEGLARSVVVVATSDEPALMRRQAA 233 (442)
T ss_pred ECCCCCCHHHHHHHHHhccCCCEEEEEEEecCcHHHHHHHHHH----------hhccCceeEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999752 244569999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+.. +++||||+|
T Consensus 234 ~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gyp~~~f~~l~~l~ERaG~~~-----~~~GSIT~i 308 (442)
T PRK08927 234 YLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRLLERAGPGP-----IGEGTITGL 308 (442)
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCcHHHHhhhhHHHHhcCCCCcccCCCcchHHHhhHHHHHhcCCC-----CCCeeeeee
Confidence 999999999999999999999999999999999999999999999999999999999999999863 368999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++.+.++|++|++|+
T Consensus 309 ~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~La~~g~~PAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~ 382 (442)
T PRK08927 309 FTVLVDGDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGC------NDPEENPLVRRARQLMATYA 382 (442)
T ss_pred eeeEccCCCCCCchhhhhhccccEEEEEcHHHHhCCCCCccCCccccccccccc------CCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred hHHHHHHcCC
Q 010179 491 DLNEIVQVGY 500 (516)
Q Consensus 491 e~~~li~~G~ 500 (516)
|+++++++|.
T Consensus 383 e~edli~lg~ 392 (442)
T PRK08927 383 DMEELIRLGA 392 (442)
T ss_pred HHHHHHHhhC
Confidence 9999999776
No 23
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=100.00 E-value=3.5e-100 Score=809.19 Aligned_cols=366 Identities=27% Similarity=0.398 Sum_probs=339.8
Q ss_pred eEEEEEECceEEEEeC-CCCccccEEEEcC-CceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccc
Q 010179 22 GYVRKVSGPVVIADGM-NGAAMYELVRVGH-DNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGIL 98 (516)
Q Consensus 22 G~V~~I~G~vv~a~Gl-~~~~iGE~v~I~~-~~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLL 98 (516)
|+|++|.|+++++++. ..+.+++.+.+.. +.+.+||++ |+++.+.+++|++++||+.|+.|.+||++++||+|++||
T Consensus 1 G~i~~i~g~vvdv~f~~~~p~i~~~l~~~~~~~~~~EVv~~l~~~~v~l~~l~~t~Gi~~G~~V~~tg~~~~VpVg~~lL 80 (449)
T TIGR03305 1 GHVVAVRGSIVDVRFDGELPAIHSVLRAGREGEVVVEVLSQLDAHHVRGIALTPTQGLARGMPVRDSGGPLKAPVGKPTL 80 (449)
T ss_pred CeEEEEEcCEEEEEeCCCCcchhheEEecCCCcEEEeeeeEecCCeEEEEEccCcccCCCCCEEEecCCceEEEcChhhc
Confidence 8999999999999984 3488999999974 578999999 999999999999999999999999999999999999999
Q ss_pred cccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCce
Q 010179 99 GNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKV 178 (516)
Q Consensus 99 GrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v 178 (516)
|||+|++|+|||+.+. +..
T Consensus 81 GRVlD~~G~PiD~~~~---------------~~~---------------------------------------------- 99 (449)
T TIGR03305 81 SRMFDVFGNTIDRREP---------------PKD---------------------------------------------- 99 (449)
T ss_pred CCEEccCccccCCCCC---------------CCC----------------------------------------------
Confidence 9999999999997421 000
Q ss_pred EEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCCCCCCC
Q 010179 179 TYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCG 257 (516)
Q Consensus 179 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~G 257 (516)
.++||+.. |+++++|.++++||+||||+||+|+|||||||++|||++|+|
T Consensus 100 -----------------------------~~~~~i~~~ap~~~~R~~i~e~L~TGIr~ID~l~pigkGQr~~Ifg~~G~G 150 (449)
T TIGR03305 100 -----------------------------VEWRSVHQAPPTLTRRSSKSEVFETGIKAIDVLVPLERGGKAGLFGGAGVG 150 (449)
T ss_pred -----------------------------ccccchhcCCCCchhcccCCcccccCceeeccccccccCCEEEeecCCCCC
Confidence 02456644 445789999999999999999999999999999999999999
Q ss_pred chHhHHHhhhccC---CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHH
Q 010179 258 KTVISQALSKYSN---SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGI 334 (516)
Q Consensus 258 KT~Ll~~ia~~~~---~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~ 334 (516)
||+|+.||++|.. +|++||++||||+||++||++++ .++++|+||++|++|||+||.+|++++|+|+
T Consensus 151 Kt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~----------~~~~~l~rtvvv~~ts~~~~~~r~~~~~~a~ 220 (449)
T TIGR03305 151 KTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREM----------KEAGVLDNTVMVFGQMNEPPGARFRVGHTAL 220 (449)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHH----------hhccccceEEEEEeCCCCCHHHHHHHHHHHH
Confidence 9999999998864 79999999999999999999974 5678999999999999999999999999999
Q ss_pred HHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEE
Q 010179 335 TIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAV 413 (516)
Q Consensus 335 tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v 413 (516)
|+|||||| +|+||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+. ++||||+|+||
T Consensus 221 tiAEyfrd~~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~GYP~~vfs~l~~L~ERag~~-------~~GSIT~i~~V 293 (449)
T TIGR03305 221 TMAEYFRDDEKQDVLLLIDNIFRFIQAGSEVSGLLGQMPSRLGYQPTLGTELAELEERIATT-------SDGAITSIQAV 293 (449)
T ss_pred HHHHHHHHhcCCceEEEecChHHHHHHHHHHHHHcCCCCCccCcCchHHHHhHHHHHhhcCC-------CCcCeeEEEEE
Confidence 99999999 99999999999999999999999999999999999999999999999999974 58999999999
Q ss_pred ecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccch-hhhhhhhhcCCHHHHHHHHHHHHHHHhhhhH
Q 010179 414 SPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYS-TALESFYEQFDPDFINIRTKAREVLQREDDL 492 (516)
Q Consensus 414 ~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~-~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~ 492 (516)
++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+| +.+ ++++|+++++++|++|++|+|+
T Consensus 294 ~~~~dD~~dPi~d~~~silDG~IvLsr~La~~g~yPAIDvl~S~SR~~~~~i------~~~~h~~~a~~~~~~l~~y~e~ 367 (449)
T TIGR03305 294 YVPADDFTDPAAVHTFSHLSASLVLSRKRASEGLYPAIDPLQSTSKMATPGI------VGERHYDLAREVRQTLAQYEEL 367 (449)
T ss_pred EccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCCcchhhcCCccc------CCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 555 7899999999999999999999
Q ss_pred HHHHHcCC
Q 010179 493 NEIVQVGY 500 (516)
Q Consensus 493 ~~li~~G~ 500 (516)
++++++|.
T Consensus 368 ~~li~~~g 375 (449)
T TIGR03305 368 KDIIAMLG 375 (449)
T ss_pred HHHHHhhC
Confidence 99999543
No 24
>TIGR01040 V-ATPase_V1_B V-type (H+)-ATPase V1, B subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=100.00 E-value=1e-99 Score=803.39 Aligned_cols=377 Identities=25% Similarity=0.374 Sum_probs=333.4
Q ss_pred eeeEEEEEECceEEEEeCCCCccccEEEE--cCCc-eEEEEEEEeCCeEEEEEcccccCCCC-CCeEEEcCCcceeecCc
Q 010179 20 EYGYVRKVSGPVVIADGMNGAAMYELVRV--GHDN-LIGEIIRLEGDSATIQVYEETAGLMV-NDPVLRTHKPLSVELGP 95 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I--~~~~-l~gEVv~~~~d~v~l~~~~~t~GI~~-G~~V~~tg~~lsVpvG~ 95 (516)
+|++|++|.|+++++.|++++++||+|+| .++. +.|||++|+++++.+|||++++||++ |+.|.+|+++++||+|+
T Consensus 1 ~y~~v~~i~G~~i~~~g~~~~~~Ge~~~i~~~~~~~~~geVi~~~~~~~~l~~~~~~~gi~~~g~~V~~t~~~~~v~vg~ 80 (466)
T TIGR01040 1 EYRTVSGVNGPLVILDNVKFPRFAEIVNLTLPDGTVRSGQVLEVSGNKAVVQVFEGTSGIDAKKTTCEFTGDILRTPVSE 80 (466)
T ss_pred CCccceEEEccEEEEECCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCeEEEEEcCCCCCcccCCCEEEECCCccEEEcCc
Confidence 37899999999999999878999999999 3444 68999999999999999999999997 99999999999999999
Q ss_pred ccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCC
Q 010179 96 GILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAM 175 (516)
Q Consensus 96 gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~ 175 (516)
+|||||||++|+|||+.+. +..
T Consensus 81 ~lLGRVid~~G~piD~~~~---------------~~~------------------------------------------- 102 (466)
T TIGR01040 81 DMLGRVFNGSGKPIDKGPP---------------VLA------------------------------------------- 102 (466)
T ss_pred ccccCEECccccccCCCCC---------------CCC-------------------------------------------
Confidence 9999999999999998421 100
Q ss_pred CceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCC-CCcccccCCCccccccccccccccccccCCccccCCCC
Q 010179 176 GKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAF 254 (516)
Q Consensus 176 g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~ 254 (516)
.++||+..+ +++++|.++++||+||||+||+|+|||+|||+||||++
T Consensus 103 --------------------------------~~~~~i~~~~~~~~~R~~i~e~l~TGI~aID~l~~ig~GQRigIfags 150 (466)
T TIGR01040 103 --------------------------------EDYLDINGQPINPYARIYPEEMIQTGISAIDVMNSIARGQKIPIFSAA 150 (466)
T ss_pred --------------------------------CceeeccCCCCChhHcCCCCCeeecCcEEEeccCccccCCeeeeecCC
Confidence 013555443 35789999999999999999999999999999999999
Q ss_pred CCCchHhHHHhhhccC------CC---------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCC
Q 010179 255 GCGKTVISQALSKYSN------SD---------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (516)
Q Consensus 255 g~GKT~Ll~~ia~~~~------~d---------~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ts 319 (516)
|+|||+|+.||++|++ +| ++||++|||| ||+.+|+++ .+ .++++|+|||+|++||
T Consensus 151 GvGKs~L~~~i~~~~~~~~~~~aD~~~~~~~~~v~V~a~IGer-re~~efi~~------~l---~~~g~l~rtvvv~ats 220 (466)
T TIGR01040 151 GLPHNEIAAQICRQAGLVKLPTKDVHDGHEDNFAIVFAAMGVN-METARFFKQ------DF---EENGSMERVCLFLNLA 220 (466)
T ss_pred CCCHHHHHHHHHHhhccccccccccccccCCceEEEEEEeeee-hHHHHHHHH------HH---HhcCCcceEEEEEECC
Confidence 9999999999999987 77 8999999999 999998875 22 5667899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH-HCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC
Q 010179 320 NMPVAAREASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfr-d~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~ 398 (516)
|+||.+|++++|+|+|+||||| ++|+||||++||+||||+|+||||+++||||+++|||||+|+.|++|+||||+++
T Consensus 221 d~p~~~R~~a~~~a~tiAEyfr~~~G~~VLl~~DslTr~A~A~REisl~~gepP~~~GYP~svfs~l~~L~ERaG~~~-- 298 (466)
T TIGR01040 221 NDPTIERIITPRLALTTAEYLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVE-- 298 (466)
T ss_pred CCCHHHHHHHHhhhHHHHHHHHHhcCCcEEEeccChHHHHHHHHHHHHhcCCCCCCcCcCchHHHHHHHHhhccccCC--
Confidence 9999999999999999999999 6999999999999999999999999999999999999999999999999999874
Q ss_pred CCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHH
Q 010179 399 GGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINI 478 (516)
Q Consensus 399 ~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~ 478 (516)
.++||||+|++|++|+||++|||+|++++||||||+|||+||++||||||||+.|+||+|+.+...+. ..++|+++
T Consensus 299 ---~~~GSITai~tV~~~~dD~~~pI~d~~~sIlDGhIvLsr~La~~g~yPAIDvl~SvSRl~~~v~~~~~-~~~~h~~~ 374 (466)
T TIGR01040 299 ---GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSAIGEGM-TRKDHSDV 374 (466)
T ss_pred ---CCCcceEEEEEEECCCCCCCCcchhhhhhhcceEEEECHHHHhCCCCCccCCccchhhccccccccCc-CcHHHHHH
Confidence 25799999999999999999999999999999999999999999999999999999999998633210 23899999
Q ss_pred HHHHHHHHHhhhhHHHHHH-cCCCc
Q 010179 479 RTKAREVLQREDDLNEIVQ-VGYLW 502 (516)
Q Consensus 479 ~~~~r~~L~~y~e~~~li~-~G~~~ 502 (516)
++++...|++++++.++.. +|.|.
T Consensus 375 a~~l~~~y~~~~~L~~ig~y~G~d~ 399 (466)
T TIGR01040 375 SNQLYACYAIGKDVQAMKAVVGEEA 399 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 9884444444444444444 56544
No 25
>PRK06820 type III secretion system ATPase; Validated
Probab=100.00 E-value=3.2e-99 Score=801.60 Aligned_cols=383 Identities=28% Similarity=0.384 Sum_probs=356.4
Q ss_pred cccccccccccccc-CceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCe
Q 010179 3 SVYGARLTTFEDEE-KESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDP 81 (516)
Q Consensus 3 ~~~~~~i~~~~~~~-~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~ 81 (516)
..+++++++|+..+ ..+.+|+|++|.|.++++.+ +++++||+|.|..+++.|||++|+++++.+|+|++++||++|++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~ 89 (440)
T PRK06820 11 PRLQQQLTRPSAPPEGLRYRGPIVEIGPTLLRASL-PGVAQGELCRIEPQGMLAEVVSIEQEMALLSPFASSDGLRCGQW 89 (440)
T ss_pred HHHHHHHHhcCCCCCceeEeeEEEEEECcEEEEEE-CCCCcCCEEEEecCCeEEEEEEEeCCeEEEEEccCccCCCCCCE
Confidence 45778999998877 67888999999999999996 58999999999534589999999999999999999999999999
Q ss_pred EEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecc
Q 010179 82 VLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFEN 161 (516)
Q Consensus 82 V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~ 161 (516)
|++||++++|++|++|||||||++|||||+.+. +. .
T Consensus 90 v~~tg~~~~v~vg~~llGrv~d~~G~pld~~~~---------------~~--~--------------------------- 125 (440)
T PRK06820 90 VTPLGHMHQVQVGADLAGRILDGLGAPIDGGPP---------------LT--G--------------------------- 125 (440)
T ss_pred EEECCCCcEEEechhhcCCEECccCCccCCCCC---------------CC--c---------------------------
Confidence 999999999999999999999999999998421 10 0
Q ss_pred ccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCcccccccccccccc
Q 010179 162 SLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALF 240 (516)
Q Consensus 162 ~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~ 240 (516)
.+||+. .|+++++|.++++||.||+|+||.|+
T Consensus 126 -----------------------------------------------~~~~i~~~~p~p~~R~~~~~~l~TGi~aID~l~ 158 (440)
T PRK06820 126 -----------------------------------------------QWRELDCPPPSPLTRQPIEQMLTTGIRAIDGIL 158 (440)
T ss_pred -----------------------------------------------ccccccCCCCChhhcCCchhhccCCCceecceE
Confidence 012332 23446899999999999999999999
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 320 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd 320 (516)
|+++|||++|||++|+|||+|+.+|+++.++|++||++||||++|+.+|++++ ...+.++|+++|+++||
T Consensus 159 ~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv~V~~~iGergrEv~ef~e~~----------l~~~~~~rtvvv~atsd 228 (440)
T PRK06820 159 SCGEGQRIGIFAAAGVGKSTLLGMLCADSAADVMVLALIGERGREVREFLEQV----------LTPEARARTVVVVATSD 228 (440)
T ss_pred EecCCCEEEEECCCCCChHHHHHHHhccCCCCEEEEEEEccChHHHHHHHHHh----------hccCCceeEEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999873 45678999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCC
Q 010179 321 MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGG 400 (516)
Q Consensus 321 ~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~ 400 (516)
+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.
T Consensus 229 ~p~~~r~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~gepP~~~GYP~~vf~~l~~L~ERag~~----- 303 (440)
T PRK06820 229 RPALERLKGLSTATTIAEYFRDRGKKVLLMADSLTRYARAAREIGLAAGEPPAAGSFPPSVFANLPRLLERTGNS----- 303 (440)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccchhHHHHHHHHHHHhcCCCCccccCCccHHHHHHHHHHhhccC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHH
Q 010179 401 PERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRT 480 (516)
Q Consensus 401 ~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~ 480 (516)
++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++.+.
T Consensus 304 --~~GSIT~i~tVl~~gdD~~dpI~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~ 375 (440)
T PRK06820 304 --DRGSITAFYTVLVEGDDMNEPVADEVRSLLDGHIVLSRRLAGAGHYPAIDIAASVSRIMPQI------VSAGQLAMAQ 375 (440)
T ss_pred --CCcceeEEEEEEccCCCCCCcchhhhccccceEEEECHHHHhCCCCCccCCcccccccchhh------CCHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999988 8999999999
Q ss_pred HHHHHHHhhhhHHHHHHcCC
Q 010179 481 KAREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 481 ~~r~~L~~y~e~~~li~~G~ 500 (516)
++|++|++|+|+++|+++|.
T Consensus 376 ~~r~~l~~y~e~~~li~~G~ 395 (440)
T PRK06820 376 KLRRMLACYQEIELLVRVGE 395 (440)
T ss_pred HHHHHHHhhhHHHHHHHhhC
Confidence 99999999999999999876
No 26
>PRK02118 V-type ATP synthase subunit B; Provisional
Probab=100.00 E-value=7.2e-99 Score=795.10 Aligned_cols=367 Identities=22% Similarity=0.322 Sum_probs=338.3
Q ss_pred eeeeEEEEEECceEEEEeCCCCccccEEEEc--CCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcc
Q 010179 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPG 96 (516)
Q Consensus 19 ~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~g 96 (516)
+.+|+|++|.|+++++++ +++++||+|+|. ++.+.|||++++++.+.+|+|++|+||++|++|.+||++++||||++
T Consensus 3 ~~~g~v~~i~G~~v~v~~-~~~~~ge~~~i~~~~~~~~geVi~~~~~~v~~~~~~~t~Gl~~g~~V~~tg~~~~vpvg~~ 81 (436)
T PRK02118 3 KIYTKITDITGNVITVEA-EGVGYGELATVERKDGSSLAQVIRLDGDKVTLQVFGGTRGISTGDEVVFLGRPMQVTYSES 81 (436)
T ss_pred ceeEEEEEEECcEEEEEe-CCCCCCCEEEEEcCCCCEEEEEEEEcCCEEEEEEecCCcCCCCCCEEEeCCCceEEEcCcc
Confidence 578999999999999998 579999999995 34588999999999999999999999999999999999999999999
Q ss_pred cccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCC
Q 010179 97 ILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMG 176 (516)
Q Consensus 97 LLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g 176 (516)
|||||||++|+|||+.+... .
T Consensus 82 lLGRV~d~~G~PiD~~~~~~---------------~-------------------------------------------- 102 (436)
T PRK02118 82 LLGRRFNGSGKPIDGGPELE---------------G-------------------------------------------- 102 (436)
T ss_pred ccCCEEccCCcccCCCCCCC---------------c--------------------------------------------
Confidence 99999999999999743110 0
Q ss_pred ceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCCCCC
Q 010179 177 KVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFG 255 (516)
Q Consensus 177 ~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g 255 (516)
..||+.. |+++++|.++++||+||||+||+|+||+||||++|||++|
T Consensus 103 --------------------------------~~~~i~~~~~~p~~R~~~~e~l~TGIkaID~l~pl~rGQkigIF~gaG 150 (436)
T PRK02118 103 --------------------------------EPIEIGGPSVNPVKRIVPREMIRTGIPMIDVFNTLVESQKIPIFSVSG 150 (436)
T ss_pred --------------------------------ceeecCCCCCChHHcCCcccccccCcEEeecccccccCCEEEEEeCCC
Confidence 0133333 2235789999999999999999999999999999999999
Q ss_pred CCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHH
Q 010179 256 CGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGIT 335 (516)
Q Consensus 256 ~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~t 335 (516)
+|||+|+.+|++|+++|++||++||||+||+.||+++| .++++|+|||+|++|||+||.+|++++++|+|
T Consensus 151 vgk~~L~~~ia~~~~~~v~Vfa~iGeR~rE~~ef~~~~----------~~~~~l~rtvlv~~~adep~~~R~~~~~~Alt 220 (436)
T PRK02118 151 EPYNALLARIALQAEADIIILGGMGLTFDDYLFFKDTF----------ENAGALDRTVMFIHTASDPPVECLLVPDMALA 220 (436)
T ss_pred CCHHHHHHHHHHhhCCCeEEEEEeccchhHHHHHHHHH----------hhCCCcceEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999975 67899999999999999999999999999999
Q ss_pred HHHHHHHCC-CcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEe
Q 010179 336 IAEYFRDMG-YNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVS 414 (516)
Q Consensus 336 iAEyfrd~G-~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~ 414 (516)
+||||||+| +||||++||+||||+|+||||+++||||+++|||||+|++|++||||||+++ ++||||+|++|+
T Consensus 221 iAEyfrd~g~~~VLli~DdlTr~a~A~REIsl~~ge~P~r~GYpp~lfs~L~~l~ERag~~~------~~GSITai~~V~ 294 (436)
T PRK02118 221 VAEKFALEGKKKVLVLLTDMTNFADALKEISITMDQIPSNRGYPGSLYSDLASRYEKAVDFE------DGGSITIIAVTT 294 (436)
T ss_pred HHHHHHhcCCCCEEEeccCchHHHHHHHHHHHhcCCCCCCCCcCCcHHHHHHHHHHhcCCCC------CCeeEEEEEEEE
Confidence 999999997 9999999999999999999999999999999999999999999999999863 589999999999
Q ss_pred cCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHH
Q 010179 415 PPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNE 494 (516)
Q Consensus 415 ~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~ 494 (516)
+|+||++|||||++++||||||+|||+| |||+.|+||+|+.+...+ ..++|++++++++++|++|+|+++
T Consensus 295 ~p~DD~tdPi~d~~~silDGqIvLsR~l--------ID~l~S~SRl~~~v~g~~--t~~~h~~~a~~l~~~~a~y~e~~d 364 (436)
T PRK02118 295 MPGDDVTHPVPDNTGYITEGQFYLRRGR--------IDPFGSLSRLKQLVIGKK--TREDHGDLMNAMIRLYADSREAKE 364 (436)
T ss_pred cCCCCcCccHHHHHHHhcCcEEEecccc--------ccCccccccccccccCcc--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 999999999999883321 337999999999999999999999
Q ss_pred HHHcCCCcc
Q 010179 495 IVQVGYLWS 503 (516)
Q Consensus 495 li~~G~~~~ 503 (516)
|+++|.+.+
T Consensus 365 li~iG~eLs 373 (436)
T PRK02118 365 KMAMGFKLS 373 (436)
T ss_pred HHHhhhhcC
Confidence 999997654
No 27
>PRK09099 type III secretion system ATPase; Provisional
Probab=100.00 E-value=3e-98 Score=795.03 Aligned_cols=370 Identities=30% Similarity=0.454 Sum_probs=344.5
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CCc--eEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCccee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HDN--LIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~~--l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsV 91 (516)
...+.+|+|++|.|++++++|+ .+++||+|+|. ++. +.|||++|+++++.+|||++++||+.|++|.+||++++|
T Consensus 20 ~~~~~~G~V~~v~g~~i~~~g~-~~~~ge~~~i~~~~g~~~~~~eVv~~~~~~~~l~~~~~t~gi~~g~~V~~tg~~~~v 98 (441)
T PRK09099 20 PAVRRTGKVVEVIGTLLRVSGL-DVTLGELCELRQRDGTLLQRAEVVGFSRDVALLSPFGELGGLSRGTRVIGLGRPLSV 98 (441)
T ss_pred CcceEeeEEEEEECCEEEEecc-CCCCCCEEEEecCCCCeeeEEEEEEEECCEEEEEEccCCcCCCCCCEEEeCCCccEE
Confidence 3467899999999999999997 59999999994 233 789999999999999999999999999999999999999
Q ss_pred ecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCC
Q 010179 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (516)
Q Consensus 92 pvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~p 171 (516)
|+|++|||||||++|||||+.+ +++..
T Consensus 99 ~vg~~lLGrV~d~~G~piD~~~---------------~~~~~-------------------------------------- 125 (441)
T PRK09099 99 PVGPALLGRVIDGLGEPIDGGG---------------PLDCD-------------------------------------- 125 (441)
T ss_pred EeccccccCEEcccCCccCCCC---------------CCccc--------------------------------------
Confidence 9999999999999999999842 11100
Q ss_pred CCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCcccc
Q 010179 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (516)
Q Consensus 172 p~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I 250 (516)
++||+.. |+++++|.++++||+||+++||.++|+++||+++|
T Consensus 126 -------------------------------------~~~~i~~~~p~p~~R~~i~e~l~TGi~~ID~l~~i~~Gq~~~I 168 (441)
T PRK09099 126 -------------------------------------ELVPVIAAPPDPMSRRMVEAPLPTGVRIVDGLMTLGEGQRMGI 168 (441)
T ss_pred -------------------------------------cccccccCCCChhhcCCcccccCCCceeccceeeecCCCEEEE
Confidence 1345433 33478999999999999999999999999999999
Q ss_pred CCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 251 ~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
||++|+|||+|+++|+++..+|+.+|++||||++|+++|++.+ .+.+.|+||++|++|||+||.+|++++
T Consensus 169 ~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGer~~ev~ef~~~~----------~~~~~l~rtvvv~~tsd~p~~~r~~a~ 238 (441)
T PRK09099 169 FAPAGVGKSTLMGMFARGTQCDVNVIALIGERGREVREFIELI----------LGEDGMARSVVVCATSDRSSIERAKAA 238 (441)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCeEEEEEEccChHHHHHHHHHH----------hhcCCcceEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999874 456789999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+. ++||||+|
T Consensus 239 ~~a~tiAEyfrd~G~~VLl~~DslTr~A~A~REisl~~gepP~~~gyP~~vf~~l~~l~ERag~~-------~~GSIT~i 311 (441)
T PRK09099 239 YVATAIAEYFRDRGLRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMG-------ETGSITAL 311 (441)
T ss_pred HHHHHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCccHHHHhHHHHHhhcCC-------CCcchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999963 58999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
+||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+
T Consensus 312 ~tVl~~~dd~~dpI~d~~~~i~DG~ivLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~lr~~la~y~ 385 (441)
T PRK09099 312 YTVLAEDESGSDPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQV------VPREHVQAAGRLRQLLAKHR 385 (441)
T ss_pred EEEEecCCCcCCcchhhhheecceEEEEcHHHHhCCCCCccCCccccCccchhc------CCHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999988 88999999999999999999
Q ss_pred hHHHHHHcC
Q 010179 491 DLNEIVQVG 499 (516)
Q Consensus 491 e~~~li~~G 499 (516)
|+++++++|
T Consensus 386 e~e~li~iG 394 (441)
T PRK09099 386 EVETLLQVG 394 (441)
T ss_pred HHHHHHHhc
Confidence 999999996
No 28
>PRK05688 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.3e-98 Score=795.71 Aligned_cols=372 Identities=26% Similarity=0.409 Sum_probs=345.1
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC----ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcc
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPL 89 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~----~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~l 89 (516)
...+.+|+|++|.|.++++.|+ .+++||+|.|. ++ .+.|||++|+++++.+|+|++++||++|+.|++||+++
T Consensus 23 ~~~~~~g~v~~v~g~~~~~~g~-~~~~ge~c~i~~~~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~ 101 (451)
T PRK05688 23 AQPVVEGRLLRMVGLTLEAEGL-RAAVGSRCLVINDDSYHPVQVEAEVMGFSGDKVFLMPVGSVAGIAPGARVVPLADTG 101 (451)
T ss_pred CccceeeEEEEEEecEEEEecC-CCCCCCEEEEecCCCccccceEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCcc
Confidence 3367889999999999999996 69999999994 23 48999999999999999999999999999999999999
Q ss_pred eeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecccccccccc
Q 010179 90 SVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVA 169 (516)
Q Consensus 90 sVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~ 169 (516)
+||+|++|||||||++|+|||+.+. ++..
T Consensus 102 ~v~vg~~llGRV~d~~G~plD~~~~---------------~~~~------------------------------------ 130 (451)
T PRK05688 102 RLPMGMSMLGRVLDGAGRALDGKGP---------------MKAE------------------------------------ 130 (451)
T ss_pred EEEecccccCCEEeccCceecCCCC---------------CCcc------------------------------------
Confidence 9999999999999999999998531 1000
Q ss_pred CCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCC-CCcccccCCCccccccccccccccccccCCcc
Q 010179 170 LPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTC 248 (516)
Q Consensus 170 ~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~ 248 (516)
++||+..+ +++++|.++++||+||+|+||.|+|+++|||+
T Consensus 131 ---------------------------------------~~~~i~~~~~~p~~R~~i~~~l~TGi~aID~l~~I~~Gqri 171 (451)
T PRK05688 131 ---------------------------------------DWVPMDGPTINPLNRHPISEPLDVGIRSINGLLTVGRGQRL 171 (451)
T ss_pred ---------------------------------------ceecccCCCCCHHHcccccCCcccceeeecceEEecCCcEE
Confidence 12344333 34678999999999999999999999999999
Q ss_pred ccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHH
Q 010179 249 AIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328 (516)
Q Consensus 249 ~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~ 328 (516)
+|||++|+|||||+.+|+++.+.|++|+++||+|++|+++|++++ .+.+.|+|||+|++|||+||.+|++
T Consensus 172 gI~G~sG~GKSTLl~~I~g~~~~dv~V~g~Ig~rg~ev~~~~~~~----------~~~~~l~rsvvv~atsd~~p~~r~~ 241 (451)
T PRK05688 172 GLFAGTGVGKSVLLGMMTRFTEADIIVVGLIGERGREVKEFIEHI----------LGEEGLKRSVVVASPADDAPLMRLR 241 (451)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCEEEEEEeCcCcHhHHHHHHHH----------hhcCCccEEEEEEECCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999874 5678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCcee
Q 010179 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVT 408 (516)
Q Consensus 329 a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT 408 (516)
++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+ .++||||
T Consensus 242 a~~~a~aiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~gepP~~~GYp~svfs~l~~l~ERag~~~-----~~~GSIT 316 (451)
T PRK05688 242 AAMYCTRIAEYFRDKGKNVLLLMDSLTRFAQAQREIALAIGEPPATKGYPPSVFAKLPKLVERAGNAE-----PGGGSIT 316 (451)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEecchhHHHHHHHHHHHhcCCCCcccCCCchHHHHhHHHHHHhcCCC-----CCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999863 1479999
Q ss_pred EEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHh
Q 010179 409 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQR 488 (516)
Q Consensus 409 ~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~ 488 (516)
+||||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++
T Consensus 317 ai~tVl~~gdD~~dpI~d~~~silDGhIvLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~la~ 390 (451)
T PRK05688 317 AFYTVLSEGDDQQDPIADSARGVLDGHIVLSRRLAEEGHYPAIDIEASISRVMPQV------VDPEHLRRAQRFKQLWSR 390 (451)
T ss_pred EEEEEEecCCCCCCchHHHHHhhccEEEEEcHHHHhCCCCCccCCccccCccchhh------CCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 899999999999999999
Q ss_pred hhhHHHHHHcC
Q 010179 489 EDDLNEIVQVG 499 (516)
Q Consensus 489 y~e~~~li~~G 499 (516)
|+++++|+++|
T Consensus 391 y~~~~dli~~g 401 (451)
T PRK05688 391 YQQSRDLISVG 401 (451)
T ss_pred HHHHHHHHHHh
Confidence 99999999976
No 29
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=100.00 E-value=2.1e-98 Score=800.99 Aligned_cols=374 Identities=16% Similarity=0.213 Sum_probs=344.0
Q ss_pred eEEEEEECceEEEEeCCCCccccEEEEcCC-ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccccc
Q 010179 22 GYVRKVSGPVVIADGMNGAAMYELVRVGHD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (516)
Q Consensus 22 G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLGr 100 (516)
-+|++|.|.++++.|+.++++||+|+|.++ .+.|+|++++++++.+++|+++.||+.|++|.+||++++||+|++||||
T Consensus 3 ~~V~~v~~~i~~v~Gl~~~~~ge~~~~~~~~~~~g~V~~~~~~~v~~~~l~~~~gi~~G~~V~~tg~~~~vpvg~~lLGR 82 (507)
T PRK07165 3 PKIKSIFDYIVEVKGEYDYQQNQFFTLKNNPNVKAFVISATEDKAYLLINNEKGKIKINDELIELNNTNKVKTSKEYFGK 82 (507)
T ss_pred CEEEEEeceEEEEEcccCCCcCCEEEECCCCeEEEEEEEEeCCeEEEEEccCccCCCCCCEEEECCCccEEECCccccCC
Confidence 478999999999999989999999999633 3899999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceEE
Q 010179 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTY 180 (516)
Q Consensus 101 V~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~~ 180 (516)
|+|++|+|||+.++... . . .
T Consensus 83 Vvd~lG~piDg~g~i~~-------------~-~-~--------------------------------------------- 102 (507)
T PRK07165 83 IIDIDGNIIYPEAQNPL-------------S-K-K--------------------------------------------- 102 (507)
T ss_pred EECCCCcccCCCCCCCc-------------c-c-c---------------------------------------------
Confidence 99999999998532100 0 0 0
Q ss_pred ecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCCCCCCCch
Q 010179 181 VAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259 (516)
Q Consensus 181 i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT 259 (516)
.....||+.. |+++++|.++++||+||||+||+|+|||||||++|||++|+|||
T Consensus 103 -------------------------~~~~~~~i~~~ap~~~~R~~v~epL~TGIkaID~l~pigrGQR~~Ifg~~gtGKT 157 (507)
T PRK07165 103 -------------------------FLPNTSSIFNLAHGLMTVKTLNEQLYTGIIAIDLLIPIGKGQRELIIGDRQTGKT 157 (507)
T ss_pred -------------------------cccccccccCCCCCchhhCCCCceeecCchhhhhcCCcccCCEEEeecCCCCCcc
Confidence 0012456533 44578999999999999999999999999999999999999999
Q ss_pred Hh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 010179 260 VI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337 (516)
Q Consensus 260 ~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiA 337 (516)
+| +.+|+||+++|+ |||++||||++||++|+++| +++++|+||++|++|+| ||.+|+++||+|+|+|
T Consensus 158 ~lal~~I~~q~~~dv~~V~~~IGer~~ev~~~~~~l----------~~~gal~~tvvV~atsd-~~~~r~~ap~~a~tiA 226 (507)
T PRK07165 158 HIALNTIINQKNTNVKCIYVAIGQKRENLSRIYETL----------KEHDALKNTIIIDAPST-SPYEQYLAPYVAMAHA 226 (507)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCChHHHHHHHHHh----------hhcCceeeeEEEEeCCC-CHHHHHHHHHHHHHHH
Confidence 99 679999999998 69999999999999999975 67789999999999995 9999999999999999
Q ss_pred HHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCC
Q 010179 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPG 417 (516)
Q Consensus 338 Eyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~ 417 (516)
|||||+ +|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+++ ++||||++++|++++
T Consensus 227 Eyfrd~-~dVLlv~DdLTr~A~A~REisLllgepPgregYPg~vF~~~srLlERAg~~~------g~GSITalpiV~t~~ 299 (507)
T PRK07165 227 ENISYN-DDVLIVFDDLTKHANIYREIALLTNKPVGKEAFPGDMFFAHSKLLERAGKFK------NRKTITALPILQTVD 299 (507)
T ss_pred HHHHhc-CceEEEEcChHHHHHHHHHHHhhccCCCCccCCCchHHHHhHHHHHhccCCC------CCCceEEEEEEECCC
Confidence 999999 9999999999999999999999999999999999999999999999999974 468999999999999
Q ss_pred CCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 418 GDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 418 ~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
||++|||||+++|||||||+|||+||++||||||||+.|+||+|+.+ .++.|.+.+..+|++|++|+|++++++
T Consensus 300 dDis~pIpdnv~sItDGqIvLsr~L~~~G~~PAIDvl~SvSRv~~~~------q~~~~~~~a~~~r~~la~Y~e~e~~~~ 373 (507)
T PRK07165 300 NDITSLISSNIISITDGQIVTSSDLFASGKLPAIDIDLSVSRTGSSV------QSKTITKVAGEISKIYRAYKRQLKLSM 373 (507)
T ss_pred CCCCCcchhhhccccCeEEEEcHHHHhCCCCCCcCCccchhhccccc------cCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 789999999999999999999999999
Q ss_pred cCCCccc
Q 010179 498 VGYLWSL 504 (516)
Q Consensus 498 ~G~~~~~ 504 (516)
+|.+.+.
T Consensus 374 ~~~~ld~ 380 (507)
T PRK07165 374 LDYDLNK 380 (507)
T ss_pred HHHhCCH
Confidence 9876543
No 30
>PTZ00185 ATPase alpha subunit; Provisional
Probab=100.00 E-value=2.6e-97 Score=788.42 Aligned_cols=385 Identities=24% Similarity=0.303 Sum_probs=348.5
Q ss_pred ceeeeEEEEEECceEEE---EeCCCCccccEEEEc--C-CceEEEEEEEeCC-eEEEEEcccccCCCCCCeEEEcCCcce
Q 010179 18 ESEYGYVRKVSGPVVIA---DGMNGAAMYELVRVG--H-DNLIGEIIRLEGD-SATIQVYEETAGLMVNDPVLRTHKPLS 90 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a---~Gl~~~~iGE~v~I~--~-~~l~gEVv~~~~d-~v~l~~~~~t~GI~~G~~V~~tg~~ls 90 (516)
..+.|+|++|.|+++++ +|++++.+||++++. + +...|+|+++++| .+.+++|++++||+.|+.|.+||++++
T Consensus 37 ~~~~G~V~~v~~gia~v~~v~Gl~~~~~gElv~f~~~~~~~~~G~vlnl~~d~~v~~v~lg~~~gI~~G~~V~~tg~~~~ 116 (574)
T PTZ00185 37 TEMIGYVHSIDGTIATLIPAPGNPGVAYNTIIMIQVSPTTFAAGLVFNLEKDGRIGIILMDNITEVQSGQKVMATGKLLY 116 (574)
T ss_pred heeeEEEEEEcCeEEEEeecCCCcccccCceEEEEcCCCCeEEEEEEEecCCCeEEEEEecCccCCCCCCEEEECCCccE
Confidence 35789999998889996 799999999999993 3 3468999999999 799999999999999999999999999
Q ss_pred eecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccC
Q 010179 91 VELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVAL 170 (516)
Q Consensus 91 VpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~ 170 (516)
||||++|||||+|++|+|||+.+...+ . +++.
T Consensus 117 VpVG~~lLGRVvD~lG~PIDg~~~~~~-----~----g~i~--------------------------------------- 148 (574)
T PTZ00185 117 IPVGAGVLGKVVNPLGHEVPVGLLTRS-----R----ALLE--------------------------------------- 148 (574)
T ss_pred EECCcccccCEECCCCcccCCCCcccc-----C----CCCC---------------------------------------
Confidence 999999999999999999998532100 0 0000
Q ss_pred CCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccc
Q 010179 171 PPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCA 249 (516)
Q Consensus 171 pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~ 249 (516)
+ ...+||+.. ++++++|.++++||+||||+||+|+|||||||++
T Consensus 149 -~----------------------------------~~~~~pIe~~ap~~~~R~~v~epL~TGIkaID~LiPIGRGQR~l 193 (574)
T PTZ00185 149 -S----------------------------------EQTLGKVDAGAPNIVSRSPVNYNLLTGFKAVDTMIPIGRGQREL 193 (574)
T ss_pred -c----------------------------------ccccccccCCCcChhhcCCCCCcCcCCceeeeccccccCCCEEE
Confidence 0 002457744 4448899999999999999999999999999999
Q ss_pred cCCCCCCCchHh-HHHhhhcc---------CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCC
Q 010179 250 IPGAFGCGKTVI-SQALSKYS---------NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (516)
Q Consensus 250 I~g~~g~GKT~L-l~~ia~~~---------~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ts 319 (516)
|||++|+|||+| +.+|+||+ ++++|||++||||++||.++.++| ++.++|+||++|++|+
T Consensus 194 IfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L----------~e~GaL~~TvVV~AtA 263 (574)
T PTZ00185 194 IVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLL----------RSYGALRYTTVMAATA 263 (574)
T ss_pred eecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHH----------HhcCCccceEEEEECC
Confidence 999999999999 57999986 568899999999999999988764 6778899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCC
Q 010179 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLG 399 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~ 399 (516)
|+||.+|+++||+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||+++.
T Consensus 264 dep~~~r~~Apy~a~tiAEYFrd~GkdVLiv~DDLTr~A~A~REISLllgrpPgRegYPgdVF~lhsrLlERAg~l~~-- 341 (574)
T PTZ00185 264 AEPAGLQYLAPYSGVTMGEYFMNRGRHCLCVYDDLSKQAVAYRQISLLLRRPPGREAYPGDVFYLHSRLLERAAMLSP-- 341 (574)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEcCchHHHHHHHHHHHhcCCCCCCCCcCccHHHHhHHHHHhcccccC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHH
Q 010179 400 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR 479 (516)
Q Consensus 400 ~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~ 479 (516)
..++||||++++|++++||++||||++++|||||||+|||+||++|+||||||+.|+||++..+ .++.|++++
T Consensus 342 -~~G~GSITAlpiV~t~adDis~pIptnviSItDGqIvLsr~Lf~~GiyPAIDVl~SvSRvg~~a------q~~~~k~vA 414 (574)
T PTZ00185 342 -GKGGGSVTALPIVETLSNDVTAYIVTNVISITDGQIYLDTKLFTGGQRPAVNIGLSVSRVGSSA------QNVAMKAVA 414 (574)
T ss_pred -CCCCcceEEEEEEEccCCCCCCcchHhhhhhcCeEEEEcHHHHhCCCCCCcCCcccccccCCcc------CCHHHHHHH
Confidence 1247999999999999999999999999999999999999999999999999999999999987 789999999
Q ss_pred HHHHHHHHhhhhHHHHHHcCCCccc
Q 010179 480 TKAREVLQREDDLNEIVQVGYLWSL 504 (516)
Q Consensus 480 ~~~r~~L~~y~e~~~li~~G~~~~~ 504 (516)
.++|..|++|+|++.+.+.|.|.+.
T Consensus 415 g~lr~~LaqY~El~~fa~fgsdld~ 439 (574)
T PTZ00185 415 GKLKGILAEYRKLAADSVGGSQVQT 439 (574)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhH
Confidence 9999999999999999999988774
No 31
>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.7e-97 Score=783.90 Aligned_cols=366 Identities=30% Similarity=0.476 Sum_probs=344.1
Q ss_pred eEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccc
Q 010179 22 GYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGIL 98 (516)
Q Consensus 22 G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLL 98 (516)
|+|++|.|++++++|+ .+++||+|+|. ++ .+.|||++++++++.+++|++++||++|+.|.+||++++||+|++||
T Consensus 1 G~v~~v~g~~v~v~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v~vg~~ll 79 (411)
T TIGR03496 1 GRVTRVVGLVLEAVGL-RAPVGSRCEIESSDGDPIEAEVVGFRGDRVLLMPLEDVEGLRPGARVFPLEGPLRLPVGDSLL 79 (411)
T ss_pred CEEEEEECcEEEEEeC-CCCcCCEEEEEcCCCCeEEEEEEEecCCEEEEEEccCccCCCCCCEEEECCCccEEEcchhhc
Confidence 7999999999999998 89999999995 33 47899999999999999999999999999999999999999999999
Q ss_pred cccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCce
Q 010179 99 GNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKV 178 (516)
Q Consensus 99 GrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v 178 (516)
|||||++|||||+.+. +..
T Consensus 80 GrVid~~G~pld~~~~---------------~~~---------------------------------------------- 98 (411)
T TIGR03496 80 GRVIDGLGRPLDGKGP---------------LDA---------------------------------------------- 98 (411)
T ss_pred CCEECCCCCCcCCCCC---------------CCc----------------------------------------------
Confidence 9999999999997421 100
Q ss_pred EEecCCCCccccceEEEEEEcCeeeeeeccccccccCC-CCcccccCCCccccccccccccccccccCCccccCCCCCCC
Q 010179 179 TYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCG 257 (516)
Q Consensus 179 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~G 257 (516)
..+||+..+ +++++|.++++++.||+|+||.++|+++||+++|||++|+|
T Consensus 99 -----------------------------~~~~~i~~~~~~~~~R~~~~~~~~tGi~~id~l~~i~~Gq~~~I~G~sG~G 149 (411)
T TIGR03496 99 -----------------------------GERVPLYAPPINPLKRAPIDEPLDVGVRAINGLLTVGRGQRMGIFAGSGVG 149 (411)
T ss_pred -----------------------------ccccccccCCCCHHhccCcceEeeeeEEeecceEEEecCcEEEEECCCCCC
Confidence 024677444 45789999999999999999999999999999999999999
Q ss_pred chHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 010179 258 KTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337 (516)
Q Consensus 258 KT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiA 337 (516)
||+|+.+|+++.++|+.+|++||||++|+.+|++++ .+.+.|+||++|++|||+||.+|++++|+|+|+|
T Consensus 150 KTtLl~~I~~~~~~~~~vi~~iGer~~ev~e~~~~~----------~~~~~~~~tvvv~~tsd~~~~~r~~a~~~a~tiA 219 (411)
T TIGR03496 150 KSTLLGMMARYTEADVVVVGLIGERGREVKEFIEDI----------LGEEGLARSVVVAATADESPLMRLRAAFYATAIA 219 (411)
T ss_pred HHHHHHHHhcCCCCCEEEEEEEecChHHHHHHHHHH----------hhCCCcceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999874 5678899999999999999999999999999999
Q ss_pred HHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCC
Q 010179 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPG 417 (516)
Q Consensus 338 Eyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~ 417 (516)
|||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+++ +++||||+|+||++|+
T Consensus 220 Eyfr~~G~~Vll~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~~-----~~~GSIT~~~tv~~~~ 294 (411)
T TIGR03496 220 EYFRDQGKDVLLLMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPQLVERAGNGE-----EGKGSITAFYTVLVEG 294 (411)
T ss_pred HHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCCccCcCHHHHHHhHHHHHHhcccC-----CCCcceeEEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999973 3689999999999999
Q ss_pred CCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 418 GDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 418 ~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+ ++++|+++++++|++|++|+|++++++
T Consensus 295 dd~~dpi~~~~~~i~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~l~~ 368 (411)
T TIGR03496 295 DDQQDPIADAARAILDGHIVLSRELAEQGHYPAIDILASISRVMPDV------VSPEHRQAARRFKQLLSRYQENRDLIS 368 (411)
T ss_pred CCCCCcchhhhcccccEEEEEchhHHhCCCCCccCCCcccccchhhh------CCHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred cC
Q 010179 498 VG 499 (516)
Q Consensus 498 ~G 499 (516)
+|
T Consensus 369 ~g 370 (411)
T TIGR03496 369 IG 370 (411)
T ss_pred hc
Confidence 77
No 32
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=100.00 E-value=3e-97 Score=785.19 Aligned_cols=375 Identities=27% Similarity=0.418 Sum_probs=348.6
Q ss_pred ccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcce
Q 010179 11 TFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLS 90 (516)
Q Consensus 11 ~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~ls 90 (516)
+|-+....+.+|+|++|.|+++++.+ +++++||+|.|..+.+.|||++|+++++.+|+|++++||++|++|.+||++++
T Consensus 12 ~~~~~~~~~~~G~v~~v~g~~~~~~~-~~~~~ge~~~i~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~tg~~~~ 90 (433)
T PRK07594 12 KYPPPDGYCRWGRIQDVSATLLNAWL-PGVFMGELCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQ 90 (433)
T ss_pred CCCCCCccceeeEEEEEECCEEEEEE-CCcCCCCEEEEecCCeEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccE
Confidence 46666667889999999999999996 58999999999545589999999999999999999999999999999999999
Q ss_pred eecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccC
Q 010179 91 VELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVAL 170 (516)
Q Consensus 91 VpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~ 170 (516)
|++|++|||||||++|||||+.+.. . ..
T Consensus 91 v~vg~~llGrVid~~G~pld~~~~~---------------~--~~----------------------------------- 118 (433)
T PRK07594 91 VPVGEALLGRVIDGFGRPLDGRELP---------------D--VC----------------------------------- 118 (433)
T ss_pred EEeChhhccCEEcccCCCcCCCCCC---------------c--cc-----------------------------------
Confidence 9999999999999999999984310 0 00
Q ss_pred CCCCCCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccCCccc
Q 010179 171 PPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCA 249 (516)
Q Consensus 171 pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~ 249 (516)
+||+. .++++++|..+++|+.||+|+||.++|+++|||++
T Consensus 119 ---------------------------------------~~~i~~~~p~~~~r~~v~~~l~tGi~aID~ll~i~~Gqrig 159 (433)
T PRK07594 119 ---------------------------------------WKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVG 159 (433)
T ss_pred ---------------------------------------ccccccCCCCceeccCHhheeCCCceeeeeeeecCCCCEEE
Confidence 12332 23457899999999999999999999999999999
Q ss_pred cCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHH
Q 010179 250 IPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (516)
Q Consensus 250 I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a 329 (516)
|||++|+|||||+++|+++.++|.+||++||||++|+++|++++ .+.+.++||++|++|+|+|+.+|+++
T Consensus 160 I~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRgrEv~efl~~~----------~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 160 IFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFT----------LSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred EECCCCCCccHHHHHhcCCCCCCEEEEEEECCCchHHHHHHHHh----------hccCCcceEEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999874 34567999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeE
Q 010179 330 IYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTI 409 (516)
Q Consensus 330 ~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~ 409 (516)
+|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~-------~~GSIT~ 302 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGEYPPGVFSALPRLLERTGMG-------EKGSITA 302 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCHHHHHHHHHHHHHhcCCCCCCCCcCchhHHHhHHHHHhhcCC-------CCcchhe
Confidence 999999999999999999999999999999999999999999999999999999999999999963 5899999
Q ss_pred EEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhh
Q 010179 410 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRE 489 (516)
Q Consensus 410 i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y 489 (516)
|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|
T Consensus 303 ~~tVl~~gdD~~dpi~d~~~~ilDG~IvLsr~la~~g~yPAIDvl~S~SR~~~~~------~~~~h~~~a~~~r~~la~y 376 (433)
T PRK07594 303 FYTVLVEGDDMNEPLADEVRSLLDGHIVLSRRLAERGHYPAIDVLATLSRVFPVV------TSHEHRQLAAILRRCLALY 376 (433)
T ss_pred eeeeeecCCCCCCchHHHhhhhcceEEEEcHHHHhCCCCCccCCcccccccchhh------CCHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999988 8999999999999999999
Q ss_pred hhHHHHHHcCC
Q 010179 490 DDLNEIVQVGY 500 (516)
Q Consensus 490 ~e~~~li~~G~ 500 (516)
+|+++||++|.
T Consensus 377 ~e~e~li~~G~ 387 (433)
T PRK07594 377 QEVELLIRIGE 387 (433)
T ss_pred hHHHHHHHhcC
Confidence 99999999987
No 33
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=4.5e-97 Score=782.70 Aligned_cols=369 Identities=30% Similarity=0.489 Sum_probs=343.0
Q ss_pred eEEEEEECceEEEEeCCCC-ccccEEEEcC--C-ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCccc
Q 010179 22 GYVRKVSGPVVIADGMNGA-AMYELVRVGH--D-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGI 97 (516)
Q Consensus 22 G~V~~I~G~vv~a~Gl~~~-~iGE~v~I~~--~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gL 97 (516)
|+|++|.|++++++|+..+ ++||+|+|.. + .+.|||++|+++++.+++|++++||++|+.|++|+++++||+|++|
T Consensus 1 G~v~~v~g~~~~v~g~~~~~~~ge~~~i~~~~~~~~~~eVv~~~~~~v~l~~~~~~~gi~~G~~V~~tg~~~~i~vg~~l 80 (418)
T TIGR03498 1 GRVTAVTGLLIEVRGLSRAVRLGDRCAIRARDGRPVLAEVVGFNGDRVLLMPFEPLEGVGLGCAVFAREGPLAVRPHPSW 80 (418)
T ss_pred CEEEEEECcEEEEEcCCCccCCCCEEEEEcCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEECCCccEEEeChhh
Confidence 7999999999999998654 9999999952 3 4789999999999999999999999999999999999999999999
Q ss_pred ccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCc
Q 010179 98 LGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGK 177 (516)
Q Consensus 98 LGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~ 177 (516)
||||||++|||||+.+. +.. .
T Consensus 81 LGRViD~lG~plD~~~~---------------~~~----------------------------------------~---- 101 (418)
T TIGR03498 81 LGRVINALGEPIDGKGP---------------LPQ----------------------------------------G---- 101 (418)
T ss_pred cCCEECCCCCccCCCCC---------------CCC----------------------------------------C----
Confidence 99999999999997421 000 0
Q ss_pred eEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccCCccccCCCCCC
Q 010179 178 VTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGC 256 (516)
Q Consensus 178 v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~ 256 (516)
..+||+. .|+++++|.++++||.||+++||.++|+++|||++|||++|+
T Consensus 102 ------------------------------~~~~~i~~~~p~~~~R~~i~~~l~tGi~aiD~~~~i~~Gq~i~I~G~sG~ 151 (418)
T TIGR03498 102 ------------------------------ERRYPLRASPPPAMSRARVGEPLDTGVRVIDTFLPLCRGQRLGIFAGSGV 151 (418)
T ss_pred ------------------------------cceechhhcCCChhhccCcccccCCccEEEeeeccccCCcEEEEECCCCC
Confidence 0146775 455688999999999999999999999999999999999999
Q ss_pred CchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHH
Q 010179 257 GKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITI 336 (516)
Q Consensus 257 GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~ti 336 (516)
|||+|+.+|+++.+++..+|+++|||++|+++|++++ .+++.|+|||+|++|||+||.+|++++|+|+|+
T Consensus 152 GKTtLl~~I~~~~~~~~gvi~~iGer~~ev~~~~~~~----------l~~~~~~~tvvv~atsd~~~~~r~~a~~~a~~i 221 (418)
T TIGR03498 152 GKSTLLSMLARNTDADVVVIALVGERGREVREFLEDD----------LGEEGLKRSVVVVATSDESPLMRRQAAYTATAI 221 (418)
T ss_pred ChHHHHHHHhCCCCCCEEEEEEEeeechHHHHHHHHh----------hhccccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999862 344569999999999999999999999999999
Q ss_pred HHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecC
Q 010179 337 AEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPP 416 (516)
Q Consensus 337 AEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~ 416 (516)
||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.. +++||||+||||++|
T Consensus 222 AEyfrd~G~~Vll~~DslTr~A~A~REisl~~gepP~~~gyp~~vf~~l~~L~ERag~~~-----~~~GSIT~~~tVl~~ 296 (418)
T TIGR03498 222 AEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPVARGYTPSVFSELPRLLERAGPGA-----EGKGSITGIFTVLVD 296 (418)
T ss_pred HHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCccccCCchhhhhhhHHHHHhccCC-----CCCcceeeeEEEecc
Confidence 999999999999999999999999999999999999999999999999999999999852 358999999999999
Q ss_pred CCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHH
Q 010179 417 GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIV 496 (516)
Q Consensus 417 ~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li 496 (516)
+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+|+++++
T Consensus 297 gdd~~dpi~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~~~ 370 (418)
T TIGR03498 297 GDDHNEPVADAVRGILDGHIVLDRAIAERGRYPAINVLASVSRLAPRV------WSPEERKLVRRLRALLARYEETEDLI 370 (418)
T ss_pred CCCCCCcchhhhheeeeeEEEECHHHHhCCCCCccCCcccccccchhh------cCHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 89999999999999999999999999
Q ss_pred HcCC
Q 010179 497 QVGY 500 (516)
Q Consensus 497 ~~G~ 500 (516)
++|.
T Consensus 371 ~~g~ 374 (418)
T TIGR03498 371 RLGA 374 (418)
T ss_pred HhhC
Confidence 9876
No 34
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=7.1e-97 Score=782.50 Aligned_cols=371 Identities=25% Similarity=0.402 Sum_probs=344.4
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEcC----CceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCccee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH----DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~----~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsV 91 (516)
...+.+|+|++|.|++++++|+. +++||+|.|.. +.+.|||++|+++++.+|||++++||++|++|.+||++++|
T Consensus 14 ~~~~~~G~v~~v~g~~v~~~g~~-~~~ge~~~i~~~~~~~~~~~eVv~~~~~~~~l~~~~~t~gl~~G~~V~~tg~~~~v 92 (434)
T PRK08472 14 NLSPRFGSITKISPTIIEADGLN-PSVGDIVKIESSDNGKECLGMVVVIEKEQFGISPFSFIEGFKIGDKVFISKEGLNI 92 (434)
T ss_pred CcceeeeEEEEEEccEEEEEecC-CCCCCEEEEecCCCCCceEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCceEE
Confidence 34678999999999999999974 99999999953 24899999999999999999999999999999999999999
Q ss_pred ecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCC
Q 010179 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (516)
Q Consensus 92 pvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~p 171 (516)
|+|++|||||||++|||||+.+... .
T Consensus 93 ~vg~~llGRViD~~G~plD~~g~~~---------------~--------------------------------------- 118 (434)
T PRK08472 93 PVGRNLLGRVVDPLGRPIDGKGAID---------------Y--------------------------------------- 118 (434)
T ss_pred EcChhhcCCEECCCCCcccCCCCCC---------------c---------------------------------------
Confidence 9999999999999999999853110 0
Q ss_pred CCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCcccc
Q 010179 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (516)
Q Consensus 172 p~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I 250 (516)
.++||+.. |+++++|.++++++.||+++||.++|+++||+++|
T Consensus 119 ------------------------------------~~~~~i~~~~~~~~~R~~i~~~l~tgi~aid~l~~i~~Gq~~~i 162 (434)
T PRK08472 119 ------------------------------------ERYAPIMKAPIAAMKRGLIDEVFSVGVKSIDGLLTCGKGQKLGI 162 (434)
T ss_pred ------------------------------------ccccccccCCCCHHHcCCcceeccchhHHhhhcceecCCCEEEE
Confidence 01345533 34478999999999999999999999999999999
Q ss_pred CCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 251 ~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
||++|+|||||+.+|+++.++|++||++||||++|+++|++.. .+.. ++||++|++|||+||.+|++++
T Consensus 163 ~G~sG~GKStLl~~i~~~~~~~v~vi~~iGergrev~e~~~~~----------l~~~-l~~tvvV~atsddsp~~R~~~~ 231 (434)
T PRK08472 163 FAGSGVGKSTLMGMIVKGCLAPIKVVALIGERGREIPEFIEKN----------LGGD-LENTVIVVATSDDSPLMRKYGA 231 (434)
T ss_pred ECCCCCCHHHHHHHHhhccCCCEEEEEeeCccchhHHHHHHHH----------hcCc-ccceEEEEECCCCCHHHhhHHH
Confidence 9999999999999999999999999999999999999998751 2333 8999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
++|+++||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+.+ ++||||+|
T Consensus 232 ~~a~~iAEyFrd~G~~Vll~~DslTr~A~A~REi~l~~ge~P~~~Gyp~~vf~~l~~l~ERag~~~------g~GSIT~~ 305 (434)
T PRK08472 232 FCAMSVAEYFKNQGLDVLFIMDSVTRFAMAQREIGLALGEPPTSKGYPPSVLSLLPQLMERAGKEE------GKGSITAF 305 (434)
T ss_pred HHHHHHHHHHHHcCCCEEEecccchHHHHHHHHHHHhcCCCCCccCcCchHHHHHHHHHHHhccCC------CCceeeEe
Confidence 999999999999999999999999999999999999999999999999999999999999999863 48999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
+||++|+||++|||+|++++|+||||+|||+||++||||||||++|+||+|+.+ ++++|++++.++|++|++|+
T Consensus 306 ~tVlv~gdD~~dpi~d~~~~i~Dg~ivLsr~la~~g~~PAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~ 379 (434)
T PRK08472 306 FTVLVEGDDMSDPIADQSRSILDGHIVLSRELTDFGIYPPINILNSASRVMNDI------ISPEHKLAARKFKRLYSLLK 379 (434)
T ss_pred EEEEecCCCCCCCchHHhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhc------CCHHHHHHHHHHHHHHHhch
Confidence 999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred hHHHHHHcCC
Q 010179 491 DLNEIVQVGY 500 (516)
Q Consensus 491 e~~~li~~G~ 500 (516)
|+++||++|.
T Consensus 380 e~e~li~~G~ 389 (434)
T PRK08472 380 ENEVLIRIGA 389 (434)
T ss_pred hHHHHHHhhC
Confidence 9999999876
No 35
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=2.5e-96 Score=776.92 Aligned_cols=364 Identities=28% Similarity=0.457 Sum_probs=340.5
Q ss_pred eEEEEEECceEEEEeCCCCccccEEEEc---CCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccc
Q 010179 22 GYVRKVSGPVVIADGMNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGIL 98 (516)
Q Consensus 22 G~V~~I~G~vv~a~Gl~~~~iGE~v~I~---~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLL 98 (516)
|+|++|.|++++|+|. ++++||+|.|. ++.+.|||++|+++++.+++|++++||++|+.|.+||++++||+|++||
T Consensus 1 G~V~~i~G~~i~v~~~-~~~ige~~~i~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~vpvg~~lL 79 (413)
T TIGR03497 1 GKVTRVIGLTIESKGP-KAKIGELCSILTKGGKPVLAEVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLL 79 (413)
T ss_pred CeEEEEECCEEEEEeC-CCCcCCEEEEEeCCCCeEEEEEEEEcCCeEEEEEccCccCCCCCCEEEEcCCeeEEEcchhhc
Confidence 8999999999999986 79999999994 3458999999999999999999999999999999999999999999999
Q ss_pred cccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCce
Q 010179 99 GNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKV 178 (516)
Q Consensus 99 GrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v 178 (516)
|||||++|+|||+.+. +.
T Consensus 80 GRVid~~G~plD~~~~---------------~~----------------------------------------------- 97 (413)
T TIGR03497 80 GRVLDGLGRPLDGEGP---------------II----------------------------------------------- 97 (413)
T ss_pred CCEEcCCCCcccCCCC---------------CC-----------------------------------------------
Confidence 9999999999997421 00
Q ss_pred EEecCCCCccccceEEEEEEcCeeeeeeccccccccCCC-CcccccCCCccccccccccccccccccCCccccCCCCCCC
Q 010179 179 TYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCG 257 (516)
Q Consensus 179 ~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~-p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~G 257 (516)
..++||+..++ ++++|.++++|+.||+|+||.++|+++|||++|||++|+|
T Consensus 98 ----------------------------~~~~~~i~~~~p~~~~R~~~~~~~~tGi~~iD~l~~i~~Gqri~I~G~sG~G 149 (413)
T TIGR03497 98 ----------------------------GEEPYPLDNPPPNPLKRPRIRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVG 149 (413)
T ss_pred ----------------------------CCccccccCCCcChHHccchhhhccccceeeeeEEEEcCCCEEEEECCCCCC
Confidence 01256775544 4789999999999999999999999999999999999999
Q ss_pred chHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHH
Q 010179 258 KTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA 337 (516)
Q Consensus 258 KT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiA 337 (516)
||+|+++|+++.++|..++++||||++|+.||+++. .++..++||++|++|||+||.+|++++|+|+|+|
T Consensus 150 KTtLl~~i~~~~~~~~gvi~~~Ger~~ev~e~~~~~----------l~~~~~~~~v~v~~tsd~~~~~r~~~~~~a~tiA 219 (413)
T TIGR03497 150 KSTLLGMIARNAKADINVIALIGERGREVRDFIEKD----------LGEEGLKRSVVVVATSDQPALMRLKAAFTATAIA 219 (413)
T ss_pred HHHHHHHHhCCCCCCeEEEEEEccchHHHHHHHHHH----------hcccccceEEEEEECCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999862 2345599999999999999999999999999999
Q ss_pred HHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCC
Q 010179 338 EYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPG 417 (516)
Q Consensus 338 Eyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~ 417 (516)
|||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+|+||++|+
T Consensus 220 Eyfr~~G~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~gyp~~~f~~l~~l~ERag~~-------~~GSIT~~~tVl~~g 292 (413)
T TIGR03497 220 EYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLERSGNS-------QKGSITGFYTVLVDG 292 (413)
T ss_pred HHHHHCCCCEEEEEcCcHHHHHHHHHHHHhcCCCCCCCCcCchHHHHhHHHHHHhcCC-------CCcceeEEEEEEccC
Confidence 9999999999999999999999999999999999999999999999999999999972 589999999999999
Q ss_pred CCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 418 GDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 418 ~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+ ++++|+++++++|++|++|+|++++++
T Consensus 293 dD~~dpi~~~~~si~dg~ivLsr~la~~g~~PAId~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~li~ 366 (413)
T TIGR03497 293 DDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEI------VSEEHKELAGKLRELLAVYKEAEDLIN 366 (413)
T ss_pred CCCCCcchhhccccccEEEEECHHHHhCCCCCccCCccccccCcccc------CCHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987 899999999999999999999999999
Q ss_pred cC
Q 010179 498 VG 499 (516)
Q Consensus 498 ~G 499 (516)
+|
T Consensus 367 ~g 368 (413)
T TIGR03497 367 IG 368 (413)
T ss_pred hc
Confidence 74
No 36
>PRK07960 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.7e-96 Score=779.63 Aligned_cols=373 Identities=26% Similarity=0.403 Sum_probs=345.9
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC----ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEc----
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRT---- 85 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~----~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~t---- 85 (516)
...+.+|||++|.|.+|++.|+ .+++||+|.|. ++ .+.+|||+|+++++++|||++++||++|++|.++
T Consensus 23 ~~~~~~G~v~~v~g~~v~~~g~-~~~iG~~c~i~~~~~~~~~~~~~eVvg~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~ 101 (455)
T PRK07960 23 PAVRRYGRLTRATGLVLEATGL-QLPLGATCVIERQNGSETHEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNISG 101 (455)
T ss_pred CccccccEEEEEEEEEEEEeCC-CCCCCCEEEEEeCCCccccceeeeEEEecCCEEEEEECCCccCCCCCCEEEECCccc
Confidence 3467889999999999999985 79999999993 23 3789999999999999999999999999999999
Q ss_pred ---CCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccc
Q 010179 86 ---HKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (516)
Q Consensus 86 ---g~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~ 162 (516)
|++++||+|++|||||+|++|+|||+.+.. ..
T Consensus 102 ~~~~~~~~v~vg~~llGRvid~~G~piDg~~~~---------------~~------------------------------ 136 (455)
T PRK07960 102 EGLQSGKQLPLGPALLGRVLDGSGKPLDGLPAP---------------DT------------------------------ 136 (455)
T ss_pred ccCCCceEEECCcccccCEECCCccccCCCCCC---------------CC------------------------------
Confidence 999999999999999999999999985311 00
Q ss_pred cccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCC-CcccccCCCccccccccccccccc
Q 010179 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFP 241 (516)
Q Consensus 163 ~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~-p~~~R~~~~epl~TGiraID~l~p 241 (516)
.++||+..++ ++++|.++++||+||||+||.|+|
T Consensus 137 ---------------------------------------------~~~~~i~~~~~~p~~R~~i~e~l~TGiraID~ll~ 171 (455)
T PRK07960 137 ---------------------------------------------GETGALITPPFNPLQRTPIEHVLDTGVRAINALLT 171 (455)
T ss_pred ---------------------------------------------CccccccCCCcChHHhcccccchhccceeeeeccc
Confidence 0135554433 468999999999999999999999
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~ 321 (516)
+++||+++|||++|+|||||+.+|+++.+.+++|+++||+|++|+.+|++++ .+.+.+++++||++++|+
T Consensus 172 I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~----------~~~~~~~~tvVv~~~ad~ 241 (455)
T PRK07960 172 VGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENI----------LGAEGRARSVVIAAPADV 241 (455)
T ss_pred ccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhh----------cCcCCCceEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999999873 456779999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCC
Q 010179 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGP 401 (516)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~ 401 (516)
||.+|++++++|+|+||||||+|+||||++||+||||+|+||||+++||+|+++||||++|+.|++|+||||+..
T Consensus 242 ~~~~r~~~~~~a~tiAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gypp~~f~~l~~l~ERag~~~----- 316 (455)
T PRK07960 242 SPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI----- 316 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCeEEEecchhHHHHHHHHHHHhcCCCCccccCCcchhhhhhHHHHHHhcCC-----
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred CCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHH
Q 010179 402 ERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTK 481 (516)
Q Consensus 402 ~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~ 481 (516)
+++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++.+.+
T Consensus 317 ~~~GSIT~i~tVlv~~dD~~dpi~d~~~~i~dg~ivLsr~la~~g~yPAID~l~S~SR~~~~~------~~~~~~~~~~~ 390 (455)
T PRK07960 317 SGGGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL------IDEQHYARVRQ 390 (455)
T ss_pred CCCeeeeeEEEEEEcCCCCCcchHHHhhhhcceEEEECHHHHhCCCCCccCcCcccCcCcccc------CCHHHHHHHHH
Confidence 257999999999999999999999999999999999999999999999999999999999988 89999999999
Q ss_pred HHHHHHhhhhHHHHHHcCC
Q 010179 482 AREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 482 ~r~~L~~y~e~~~li~~G~ 500 (516)
+|++|+.|+++++||++|.
T Consensus 391 ~r~~l~~Y~~~~dli~ig~ 409 (455)
T PRK07960 391 FKQLLSSFQRNRDLVSVGA 409 (455)
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999764
No 37
>PRK08149 ATP synthase SpaL; Validated
Probab=100.00 E-value=4.4e-96 Score=775.33 Aligned_cols=374 Identities=27% Similarity=0.433 Sum_probs=344.8
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEc----CCceE--EEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCccee
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG----HDNLI--GEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~----~~~l~--gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsV 91 (516)
.+.+|+|++|.|+++++++ +++++||+|+|. ++.+. |||++|+++++.+|+|++++||++|++|.+++++++|
T Consensus 4 ~~~~g~v~~i~g~~i~~~~-~~~~~ge~~~i~~~~~~~~~~~~~evv~~~~~~~~l~~~~~~~gi~~g~~v~~~~~~~~v 82 (428)
T PRK08149 4 LQRLAHPLRIQGPIIEAEL-PDVAIGEICEIRAGWHSNEVIARAQVVGFQRERTILSLIGNAQGLSRQVVLKPTGKPLSV 82 (428)
T ss_pred eeeeeEEEEEEeeEEEEEE-CCCCcCCEEEEeecCCCCceeeEEEEEEeeCcEEEEEECCCccCCCCCCEEEEcCCcCEE
Confidence 3578999999999999997 489999999993 23355 8999999999999999999999999999999999999
Q ss_pred ecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCC
Q 010179 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (516)
Q Consensus 92 pvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~p 171 (516)
|+|++|||||+|++|||||+.+. ++. |. +
T Consensus 83 ~vg~~llGrv~d~~G~piD~~~~-------------~~~---------~~------------------------~----- 111 (428)
T PRK08149 83 WVGEALLGAVLDPTGKIVERFDA-------------PPT---------VG------------------------P----- 111 (428)
T ss_pred EeChhhcCCeeCCCCCCcCCCCC-------------Ccc---------cc------------------------c-----
Confidence 99999999999999999997420 000 00 0
Q ss_pred CCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCcccc
Q 010179 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (516)
Q Consensus 172 p~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I 250 (516)
...+||+.. |+++.+|.++++||.||+++||.++|+++|||++|
T Consensus 112 -----------------------------------~~~~~~i~~~~~~~~~R~~i~e~l~tGi~aid~ll~i~~Gq~i~I 156 (428)
T PRK08149 112 -----------------------------------ISEERVIDVAPPSYAERRPIREPLITGVRAIDGLLTCGVGQRMGI 156 (428)
T ss_pred -----------------------------------ccceeehhccCCcchhccCccccccCCcEEEeeeeeEecCCEEEE
Confidence 002456644 44578999999999999999999999999999999
Q ss_pred CCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 251 ~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
||++|+|||||+.+|+++.++|++|+++||+|++|+++|++++ .+.+.++|+++|++|||+||.+|++++
T Consensus 157 ~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~----------l~~~~~~~~~vV~~~sd~p~~~r~~a~ 226 (428)
T PRK08149 157 FASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESL----------RASSRREKCVLVYATSDFSSVDRCNAA 226 (428)
T ss_pred ECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHH----------hhcccccceEEEEECCCCCHHHHHhHH
Confidence 9999999999999999999999999999999999999999874 456779999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+. ++||||+|
T Consensus 227 ~~a~tiAE~fr~~G~~Vll~~DslTr~A~A~rEi~l~~ge~P~~~Gyp~~vfs~l~~l~ERag~~-------~~GSIT~~ 299 (428)
T PRK08149 227 LVATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALAAGELPARRGYPASVFDSLPRLLERPGAT-------LAGSITAF 299 (428)
T ss_pred HHHHHHHHHHHHcCCCEEEEccchHHHHHHHHHhHhhcCCCCcccccCccHHHHHHHHHHhccCC-------CCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999986 47999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|+++++++|++|++|+
T Consensus 300 ~tVl~~~dD~~dpi~d~~~~ilDg~ivLsr~La~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~ 373 (428)
T PRK08149 300 YTVLLESEEEPDPIGDEIRSILDGHIYLSRKLAAKGHYPAIDVLKSVSRVFGQV------TDPKHRQLAAAFRKLLTRLE 373 (428)
T ss_pred EEEEecCCCCCCCchhhhheeccEEEEEcHHHHhCCCCCcccCccccccchhhh------cCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred hHHHHHHcCCC
Q 010179 491 DLNEIVQVGYL 501 (516)
Q Consensus 491 e~~~li~~G~~ 501 (516)
|+++||++|+.
T Consensus 374 e~e~li~~G~y 384 (428)
T PRK08149 374 ELQLFIDLGEY 384 (428)
T ss_pred HHHHHHHcCCC
Confidence 99999999963
No 38
>PRK05922 type III secretion system ATPase; Validated
Probab=100.00 E-value=1e-95 Score=772.98 Aligned_cols=368 Identities=26% Similarity=0.354 Sum_probs=340.4
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEc---CCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecC
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELG 94 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~---~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG 94 (516)
.+.+|+|++|.|++++++|+ .+++||+|.|. ++.+.|||++|+++++.+|||++++||++|++|.+++++++|++|
T Consensus 17 ~~~~g~v~~v~g~~i~~~g~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~G~~V~~~~~~~~v~vg 95 (434)
T PRK05922 17 YRECGLLSRVSGNLLEAQGL-SACLGELCQISLSKSPPILAEVIGFHNRTTLLMSLSPIHYVALGAEVLPLRRPPSLHLS 95 (434)
T ss_pred ceeeeEEEEEEccEEEEEeC-CCCCCCEEEEecCCCCeeEEEEEEEeCCeEEEEEccCCCCCCCCCEEEeCCCCcEEEcC
Confidence 56889999999999999997 58999999994 234899999999999999999999999999999999999999999
Q ss_pred cccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCC
Q 010179 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (516)
Q Consensus 95 ~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~ 174 (516)
++|||||||++|||||+.+ +++ .|
T Consensus 96 ~~llGrv~d~~G~pld~~~---------------~~~---~~-------------------------------------- 119 (434)
T PRK05922 96 DHLLGRVLDGFGNPLDGKE---------------QLP---KT-------------------------------------- 119 (434)
T ss_pred hhhcCCEeCCCCCccCCCC---------------CCC---cc--------------------------------------
Confidence 9999999999999999742 111 01
Q ss_pred CCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccCCccccCCC
Q 010179 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (516)
Q Consensus 175 ~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~ 253 (516)
.+||+. .|+++++|.++++||+||||+||.|+|+++|||++|||+
T Consensus 120 ----------------------------------~~~pi~~~~~~~~~R~~i~e~l~TGIr~ID~ll~I~~GqrigI~G~ 165 (434)
T PRK05922 120 ----------------------------------HLKPLFSSPPSPMSRQPIQEIFPTGIKAIDAFLTLGKGQRIGVFSE 165 (434)
T ss_pred ----------------------------------ceeecccCCCChhhcCCcceecCCCceeecceEEEcCCcEEEEECC
Confidence 123443 233468999999999999999999999999999999999
Q ss_pred CCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHH
Q 010179 254 FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333 (516)
Q Consensus 254 ~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a 333 (516)
+|+|||||+.+|+++.++++++|++||||++|+.+|++++ .+...+++|++|+||||+||.+|++++|+|
T Consensus 166 nG~GKSTLL~~Ia~~~~~d~gvi~liGerg~ev~eyl~q~----------~~~~~~~rTVlv~atsd~~~~~r~~a~~~a 235 (434)
T PRK05922 166 PGSGKSSLLSTIAKGSKSTINVIALIGERGREVREYIEQH----------KEGLAAQRTIIIASPAHETAPTKVIAGRAA 235 (434)
T ss_pred CCCChHHHHHHHhccCCCCceEEEEeCCCCchHHHHHHHH----------HhhccccceEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864 344568999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEE
Q 010179 334 ITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAV 413 (516)
Q Consensus 334 ~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v 413 (516)
+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+. ++||||+|+||
T Consensus 236 ~tiAEyfrd~G~~VLl~~DslTR~A~A~REisl~~ge~P~~~gyp~svfs~l~~l~ERag~~-------~~GSIT~~~tV 308 (434)
T PRK05922 236 MTIAEYFRDQGHRVLFIMDSLSRWIAALQEVALARGETLSAHHYAASVFHHVSEFTERAGNN-------DKGSITALYAI 308 (434)
T ss_pred HHHHHHHHHcCCCEEEeccchhHHHHHHHHHHHhcCCCCCcCCcCchHHHHhHHHHHhhcCC-------CCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999983 57999999999
Q ss_pred ecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHH
Q 010179 414 SPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLN 493 (516)
Q Consensus 414 ~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~ 493 (516)
++++| ..|||+|++++||||||+|||+||+++ |||||+++|+||+|+.+ ++++|++++.++|++|++|+|++
T Consensus 309 l~~~~-~~dpi~d~~rsilDGhIvLsr~la~~~-~PAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~e 380 (434)
T PRK05922 309 LHYPN-HPDIFTDYLKSLLDGHFFLTPQGKALA-SPPIDILTSLSRSARQL------ALPHHYAAAEELRSLLKAYHEAL 380 (434)
T ss_pred EecCC-CCCccccchhhhcCcEEEEcHHHHhCC-CCCcCCccccccCCccc------cCHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 789999999999999999999999987 99999999999999998 89999999999999999999999
Q ss_pred HHHHcCCC
Q 010179 494 EIVQVGYL 501 (516)
Q Consensus 494 ~li~~G~~ 501 (516)
++|++|.-
T Consensus 381 dli~~G~y 388 (434)
T PRK05922 381 DIIQLGAY 388 (434)
T ss_pred HHHHhcCC
Confidence 99998863
No 39
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=6.6e-94 Score=759.87 Aligned_cols=379 Identities=22% Similarity=0.349 Sum_probs=345.4
Q ss_pred ccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEc
Q 010179 9 LTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRT 85 (516)
Q Consensus 9 i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~t 85 (516)
+++.......+.+|+|++|.|.++++.|+ .+++||+|+|. ++ .+.|||++|+++++++|||++++||+.|++|.+|
T Consensus 6 ~~~~~~~~~~~~~G~v~~v~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~v~~~ 84 (434)
T PRK07196 6 LKSIENIHLARVAGRLVRVTGLLLESVGC-RLAIGQRCRIESVDETFIEAQVVGFDRDITYLMPFKHPGGVLGGARVFPS 84 (434)
T ss_pred HhhhccCCccceeeEEEEEEcCEEEEecC-CCCcCCEEEEEeCCCceEEEEEEEecCCEEEEEECCCccCCCCCCEEEEC
Confidence 34444445567899999999999999997 69999999993 33 4899999999999999999999999999999999
Q ss_pred CCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecccccc
Q 010179 86 HKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQ 165 (516)
Q Consensus 86 g~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~ 165 (516)
|++++||+|++|||||||++|+|||+.+.. ..+.
T Consensus 85 ~~~~~v~vg~~llGrv~d~~G~pld~~~~~---------------~~~~------------------------------- 118 (434)
T PRK07196 85 EQDGELLIGDSWLGRVINGLGEPLDGKGQL---------------GGST------------------------------- 118 (434)
T ss_pred CCccEEEcCccccCCeeCcCCCCcCCCCCC---------------CCCc-------------------------------
Confidence 999999999999999999999999985311 0000
Q ss_pred ccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCcccccccccccccccccc
Q 010179 166 HHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVL 244 (516)
Q Consensus 166 ~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigk 244 (516)
+||+.. |+++++|.++++||+||+++||.++|+++
T Consensus 119 --------------------------------------------~~~~~~~~~~p~~R~~~~~~l~TGi~aID~ll~I~~ 154 (434)
T PRK07196 119 --------------------------------------------PLQQQLPQIHPLQRRAVDTPLDVGVNAINGLLTIGK 154 (434)
T ss_pred --------------------------------------------eeeccCCCCChHHhcccccccccceeeccceEeEec
Confidence 122222 22357899999999999999999999999
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHH
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~ 324 (516)
||+++|||++|+|||||+.+|+++.++|++|+++||+|++|+.+|.++. ..+..+.|++++++++|+|+.
T Consensus 155 GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~----------l~~~gl~rsvvv~~~~d~s~~ 224 (434)
T PRK07196 155 GQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHS----------LQAAGMAKSVVVAAPADESPL 224 (434)
T ss_pred ceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHH----------hhhcccceEEEEEecCCCChh
Confidence 9999999999999999999999999999999999999999999999752 233448999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCC
Q 010179 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERT 404 (516)
Q Consensus 325 ~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~ 404 (516)
+|+.++++++++|||||++|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+.+ ++
T Consensus 225 ~rl~a~e~a~~iAEyfr~~g~~Vll~~Dsltr~a~A~REisl~~ge~P~~~Gyp~svf~~l~~l~ERag~~~------~~ 298 (434)
T PRK07196 225 MRIKATELCHAIATYYRDKGHDVLLLVDSLTRYAMAQREIALSLGEPPATKGYPPSAFSIIPRLAESAGNSS------GN 298 (434)
T ss_pred hhHHHHHHHHHHHHHhhhccCCEEEeecchhHHHhhhhHHHHhcCCCCcccCcCHHHHHHhHHHHHHhhcCC------CC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999863 57
Q ss_pred CceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHH
Q 010179 405 GSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKARE 484 (516)
Q Consensus 405 GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~ 484 (516)
||||+||||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|+
T Consensus 299 GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~~------~~~~~~~~a~~~r~ 372 (434)
T PRK07196 299 GTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSRKLAEAGHYPAIDISQSISRCMSQV------IGSQQAKAASLLKQ 372 (434)
T ss_pred EEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcHHHHhCCCCCccCCccccCccchhc------cCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988 89999999999999
Q ss_pred HHHhhhhHHHHHHcCC
Q 010179 485 VLQREDDLNEIVQVGY 500 (516)
Q Consensus 485 ~L~~y~e~~~li~~G~ 500 (516)
+|++|+|+++|+++|.
T Consensus 373 ~~a~y~e~~~li~~g~ 388 (434)
T PRK07196 373 CYADYMAIKPLIPLGG 388 (434)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999999774
No 40
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase.
Probab=100.00 E-value=3.7e-93 Score=755.79 Aligned_cols=371 Identities=32% Similarity=0.487 Sum_probs=346.0
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEc---CCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecC
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG---HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELG 94 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~---~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG 94 (516)
.+.+|+|++|.|+++++.+ +++.+||+|.|. ++.+.|||++|+++++.+|+|++++||++|++|++||++++||+|
T Consensus 3 ~~~~G~V~~v~g~~v~v~~-~~~~~ge~~~i~~~~~~~~~~eVi~~~~~~~~l~~~~~~~gl~~G~~V~~tg~~~~v~vg 81 (422)
T TIGR02546 3 VRVRGRVTEVSGTLLKAVL-PGARVGELCLIRRRDPSQLLAEVVGFTGDEALLSPLGELHGISPGSEVIPTGRPLSIRVG 81 (422)
T ss_pred cceeEEEEEEECcEEEEEE-CCCCCCCEEEEeeCCCCeEEEEEEEEcCCcEEEEEccCccCCCCCCEEEECCCCceEEeC
Confidence 3578999999999999996 589999999995 235899999999999999999999999999999999999999999
Q ss_pred cccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCC
Q 010179 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (516)
Q Consensus 95 ~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~ 174 (516)
++|||||||++|||||+.+... ..
T Consensus 82 ~~lLGrViD~~G~plD~~~~~~-------------------------------------------------------~~- 105 (422)
T TIGR02546 82 EALLGRVLDGFGRPLDGKGELP-------------------------------------------------------AG- 105 (422)
T ss_pred hhhccCEeCCCCCcccCCCCCC-------------------------------------------------------CC-
Confidence 9999999999999999843100 00
Q ss_pred CCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccCCccccCCC
Q 010179 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (516)
Q Consensus 175 ~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~ 253 (516)
..++||++ .|+++++|.++++||.||+++||.++|+++||+++|+|+
T Consensus 106 --------------------------------~~~~~pi~~~~~~~~~R~~i~~~l~tG~~~id~l~~i~~Gq~~~I~G~ 153 (422)
T TIGR02546 106 --------------------------------EIETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAG 153 (422)
T ss_pred --------------------------------CceeeeccCCCcCHHHccCcccccCCCceeehhhccccCCCEEEEECC
Confidence 00257885 455688999999999999999999999999999999999
Q ss_pred CCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHH
Q 010179 254 FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTG 333 (516)
Q Consensus 254 ~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a 333 (516)
+|+|||+|+.+|+++.++|..+|++||+|++|+.+|++++ .+.+.+++|++|++++|+|+.+|++++|+|
T Consensus 154 sG~GKStLl~~I~~~~~~~~~vi~~iG~~~~ev~~~~~~~----------~~~~~~~~tvvv~~~s~~p~~~r~~~~~~a 223 (422)
T TIGR02546 154 AGVGKSTLLGMIARGASADVNVIALIGERGREVREFIEHH----------LGEEGRKRSVLVVSTSDRPSLERLKAAYTA 223 (422)
T ss_pred CCCChHHHHHHHhCCCCCCEEEEEEEccCCcCHHHHHHHH----------hccccccceEEEeccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999863 456779999999999999999999999999
Q ss_pred HHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEE
Q 010179 334 ITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAV 413 (516)
Q Consensus 334 ~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v 413 (516)
+++|||||++|+|||+++||+||||+|+||||+++||||+++||||++|+.|++||||||+. ++||||+|+||
T Consensus 224 ~~~AE~f~~~g~~Vl~~~Dsltr~a~A~rei~l~~ge~P~~~gyp~~~f~~l~~l~ERag~~-------~~GSIT~~~tv 296 (422)
T TIGR02546 224 TAIAEYFRDQGKRVLLMMDSLTRFARALREIGLAAGEPPARGGYPPSVFSSLPRLLERAGNG-------EKGSITALYTV 296 (422)
T ss_pred HHHHHHHHHCCCcEEEEEeCchHHHHHHHHHHHhcCCCCcccccChhHHHHhHHHHHHhcCC-------CCCceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999973 58999999999
Q ss_pred ecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHH
Q 010179 414 SPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLN 493 (516)
Q Consensus 414 ~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~ 493 (516)
++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+++.+ ++++|++++.++|++|++|+|++
T Consensus 297 ~~~~dd~~~pi~~~~~~i~dg~i~Lsr~la~~g~yPAId~~~S~SR~~~~~------~~~~~~~~a~~~~~~l~~y~e~~ 370 (422)
T TIGR02546 297 LVEGDDMNDPIADEVRSILDGHIVLSRALAERNHYPAIDVLASLSRVMSQV------VSTEHRRAAGKLRRLLATYKEVE 370 (422)
T ss_pred eccCCCCCCCchhhhhccccEEEEEcHHHHhCCCCCccCCccccccchhhh------CCHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999999999999999988 89999999999999999999999
Q ss_pred HHHHcCC
Q 010179 494 EIVQVGY 500 (516)
Q Consensus 494 ~li~~G~ 500 (516)
+|+++|.
T Consensus 371 ~li~~g~ 377 (422)
T TIGR02546 371 LLIRLGE 377 (422)
T ss_pred HHHHhcC
Confidence 9999864
No 41
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2.8e-93 Score=755.90 Aligned_cols=383 Identities=27% Similarity=0.422 Sum_probs=349.0
Q ss_pred ccccccccc-cccCceeeeEEEEEECceEEEEeCC-CCccccEEEEcC--CceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 5 YGARLTTFE-DEEKESEYGYVRKVSGPVVIADGMN-GAAMYELVRVGH--DNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 5 ~~~~i~~~~-~~~~~~~~G~V~~I~G~vv~a~Gl~-~~~iGE~v~I~~--~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
+.+.+++|. .....+.+|+|++|.|.++++.|++ ++++||+|+|.. +.+.|||++|+++++.+|||+++.||++|+
T Consensus 10 ~~~~~~~~~~~~~~~~~~G~v~~v~g~~~~~~g~~~~~~iGe~~~i~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~ 89 (450)
T PRK06002 10 LAALVERYAAPEPLVRIGGTVSEVTASHYRVRGLSRFVRLGDFVAIRADGGTHLGEVVRVDPDGVTVKPFEPRIEIGLGD 89 (450)
T ss_pred HHHHHHhcccccCccceeEEEEEEeceEEEEEcCccCCCCCCEEEEECCCCcEEEEEEEEeCCeEEEEEccCCcCCCCCC
Confidence 456778888 6666788999999999999999975 799999999952 348899999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
+|.. ++++++++|++|||||+|++|+|||+.+. +...
T Consensus 90 ~v~~-~~~~~v~vg~~llGRV~d~~G~piDg~~~---------------~~~~--------------------------- 126 (450)
T PRK06002 90 AVFR-KGPLRIRPDPSWKGRVINALGEPIDGLGP---------------LAPG--------------------------- 126 (450)
T ss_pred EEEe-CCCceeecCcccccCEECCCCcCCCCCCC---------------CCCC---------------------------
Confidence 9999 67999999999999999999999998421 1000
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l 239 (516)
..+||+.. ++++++|..+++++.||+++||.+
T Consensus 127 -----------------------------------------------~~~~~i~~~~p~~~~r~~v~~~l~TGi~aID~L 159 (450)
T PRK06002 127 -----------------------------------------------TRPMSIDATAPPAMTRARVETGLRTGVRVIDIF 159 (450)
T ss_pred -----------------------------------------------cceeeccCCCCCCeEeecceEEcCCCcEEeeee
Confidence 00245533 445789999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ts 319 (516)
+||++|||++|||++|+|||||+.+|++..+++..+|+++|||++|+.+|.++. .. ..++|+++|++++
T Consensus 160 ~~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~----------l~-~~r~rtI~vV~qs 228 (450)
T PRK06002 160 TPLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDT----------LA-DNLKKAVAVVATS 228 (450)
T ss_pred ceecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHH----------HH-HhhCCeEEEEEcC
Confidence 999999999999999999999999999998899999999999999999998752 12 2378999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCC
Q 010179 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLG 399 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~ 399 (516)
|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.|++|+||||+..
T Consensus 229 d~~~~~r~~~~~~a~~iAEyfrd~G~~Vll~~DslTr~A~A~rEisl~~ge~P~~~gyp~~vf~~l~~l~ERag~~~--- 305 (450)
T PRK06002 229 DESPMMRRLAPLTATAIAEYFRDRGENVLLIVDSVTRFAHAAREVALAAGEPPVARGYPPSVFSELPRLLERAGPGA--- 305 (450)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeccchHHHHHHHHHHHHhcCCCCccccCCccHHHHhhHHHHHhccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999852
Q ss_pred CCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHH
Q 010179 400 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIR 479 (516)
Q Consensus 400 ~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~ 479 (516)
+++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++
T Consensus 306 --~~~GSIT~~~tvl~~~dd~~dpI~d~~~~i~Dg~ivLsr~la~~g~~PAIDv~~S~SR~~~~~------~~~~~~~~a 377 (450)
T PRK06002 306 --EGGGSITGIFSVLVDGDDHNDPVADSIRGTLDGHIVLDRAIAEQGRYPAVDPLASISRLARHA------WTPEQRKLV 377 (450)
T ss_pred --CCCeeeeEEEEEEecCCCCCCccHHHHHhhcceEEEEcHHHHhCCCCCccCCccccCcccccc------cCHHHHHHH
Confidence 368999999999999999999999999999999999999999999999999999999999988 899999999
Q ss_pred HHHHHHHHhhhhHHHHHHcC
Q 010179 480 TKAREVLQREDDLNEIVQVG 499 (516)
Q Consensus 480 ~~~r~~L~~y~e~~~li~~G 499 (516)
.++|++|++|+|+++||++|
T Consensus 378 ~~~r~~la~y~e~e~li~ig 397 (450)
T PRK06002 378 SRLKSMIARFEETRDLRLIG 397 (450)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999754
No 42
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=100.00 E-value=1.9e-92 Score=752.60 Aligned_cols=373 Identities=30% Similarity=0.446 Sum_probs=344.4
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEc----CCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCccee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG----HDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSV 91 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~----~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsV 91 (516)
...+.+|+|++|.|+++++.+. .+.+||+|+|. ++.+.|||++|+++++.+|+|++++||++|++|++||++++|
T Consensus 19 ~~~~~~G~v~~i~G~~v~~~~~-~~~~ge~~~i~~~~~~~~~~~eVi~~~~~~v~l~~~~~t~gl~~G~~V~~tg~~~~v 97 (440)
T TIGR01026 19 RLVKRVGRVTKVKGLLIEAVGP-QASVGDLCLIERRGSEGRLVAEVVGFNGEFVFLMPYEEVEGVRPGSKVLATGEGLSI 97 (440)
T ss_pred CccceeeEEEEEEeeEEEEEcC-CCCcCCEEEEeecCCCCcEEEEEEEecCCEEEEEEccCCcCCCCCCEEEeCCCccEE
Confidence 3467899999999999999975 79999999995 234899999999999999999999999999999999999999
Q ss_pred ecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCC
Q 010179 92 ELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALP 171 (516)
Q Consensus 92 pvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~p 171 (516)
|+|++|||||||++|||||+.+. ++..
T Consensus 98 ~vg~~llGRVid~~G~plD~~~~--------------~~~~--------------------------------------- 124 (440)
T TIGR01026 98 KVGDGLLGRVLDGLGKPIDGKGK--------------FLDN--------------------------------------- 124 (440)
T ss_pred EcChhhhhceecCCCcccCCCCC--------------CCCC---------------------------------------
Confidence 99999999999999999998421 0000
Q ss_pred CCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCcccc
Q 010179 172 PDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAI 250 (516)
Q Consensus 172 p~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I 250 (516)
..+||+.. |+++++|.++++|+.||+|+||.++|+++|||++|
T Consensus 125 ------------------------------------~~~~~i~~~~~~p~~R~~~~e~l~TGi~~iD~l~~i~~Gq~~~I 168 (440)
T TIGR01026 125 ------------------------------------VETEGLITAPINPLKRAPIREILSTGVRSIDGLLTVGKGQRIGI 168 (440)
T ss_pred ------------------------------------ccccccccCCCChHHccCccccccceeeeeeeccccCCCcEEEE
Confidence 01344433 34467999999999999999999999999999999
Q ss_pred CCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 251 PGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 251 ~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
||++|+|||+|+.+|+++.++++.+|++||+|++|+.+|++++ .+.+.|+||++|++|+|+||.+|++++
T Consensus 169 ~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~----------~~~~~l~~tvvv~~~~d~~p~~r~~~~ 238 (440)
T TIGR01026 169 FAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHD----------LGEEGLKRSVVVVATSDQSPLLRLKGA 238 (440)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHH----------hcccccceEEEEEECCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999763 345669999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||+. ++||||+|
T Consensus 239 ~~a~t~AE~frd~G~~Vll~~DslTr~A~A~REisl~~ge~P~~~Gypp~~~~~l~~l~ERag~~-------~~GSIT~i 311 (440)
T TIGR01026 239 YVATAIAEYFRDQGKDVLLLMDSVTRFAMAQREIGLAAGEPPATKGYTPSVFSTLPRLLERAGAS-------GKGSITAF 311 (440)
T ss_pred HHHHHHHHHHHHCCCCEEEEEeChHHHHHHHHHHHHhcCCCCcccccChhHHHHHHHHHHHhccC-------CCCeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999952 57999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
+||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+
T Consensus 312 ~tVl~~~~d~~dpi~d~~~~i~dG~ivLsr~la~~~~~PAId~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~ 385 (440)
T TIGR01026 312 YTVLVEGDDMNEPIADSVRGILDGHIVLSRALAQRGHYPAIDVLASISRLMTAI------VSEEHRRAARKFRELLSKYK 385 (440)
T ss_pred EEEEccCcCCCcchhhhhccccceEEEEecchhhCCccCccCCCcccccCcccc------CCHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred hHHHHHHcCCC
Q 010179 491 DLNEIVQVGYL 501 (516)
Q Consensus 491 e~~~li~~G~~ 501 (516)
|+++|+++|..
T Consensus 386 e~~~li~ig~y 396 (440)
T TIGR01026 386 DNEDLIRIGAY 396 (440)
T ss_pred HHHHHHHhhcc
Confidence 99999998743
No 43
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=1.4e-89 Score=726.47 Aligned_cols=379 Identities=24% Similarity=0.360 Sum_probs=346.9
Q ss_pred cccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcc
Q 010179 10 TTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPL 89 (516)
Q Consensus 10 ~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~l 89 (516)
++|-.....+.+|+|++|.|.++++.|+ ++++||+|+|.++.+.|||++|+++++.+++|++++||++|++|.+||+++
T Consensus 11 ~~~~~~~~~~~~g~v~~~~g~~~~~~g~-~~~ige~~~i~~~~~~~eV~~~~~~~~~~~~~~~~~gi~~g~~v~~~~~~~ 89 (432)
T PRK06793 11 NTFIETPFYTKVGKVHSVQEQFFVAKGP-KAKIGDVCFVGEHNVLCEVIAIEKENNMLLPFEQTEKVCYGDSVTLIAEDV 89 (432)
T ss_pred HHHhcCCccceeeEEEEEEEEEEEEEcC-CCCcCCEEEECCCCEEEEEEEecCCcEEEEEccCccCCCCCCEEEECCCcc
Confidence 3444445567889999999999999985 899999999953458999999999999999999999999999999999999
Q ss_pred eeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecccccccccc
Q 010179 90 SVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVA 169 (516)
Q Consensus 90 sVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~ 169 (516)
+||+|++|||||+|++|+|||+.+....
T Consensus 90 ~v~vg~~~lGrV~d~~G~piD~~~~~~~---------------------------------------------------- 117 (432)
T PRK06793 90 VIPRGNHLLGKVLSANGEVLNEEAENIP---------------------------------------------------- 117 (432)
T ss_pred EEEcCHhhccCEECcCCccCCCCCCCCC----------------------------------------------------
Confidence 9999999999999999999998421000
Q ss_pred CCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCC-CcccccCCCccccccccccccccccccCCcc
Q 010179 170 LPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTC 248 (516)
Q Consensus 170 ~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~-p~~~R~~~~epl~TGiraID~l~pigkGqr~ 248 (516)
.++||+..++ ++++|..+++++.||+|+||.++|+++|||+
T Consensus 118 --------------------------------------~~~~~i~~~~~~~~~r~~i~~~l~TGiraID~ll~I~~Gqri 159 (432)
T PRK06793 118 --------------------------------------LQKIKLDAPPIHAFEREEITDVFETGIKSIDSMLTIGIGQKI 159 (432)
T ss_pred --------------------------------------cccccccCCCCCchheechhhccCCCCEEEeccceecCCcEE
Confidence 0124443333 4689999999999999999999999999999
Q ss_pred ccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHH
Q 010179 249 AIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328 (516)
Q Consensus 249 ~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~ 328 (516)
+|||++|+|||+|+.+|+++.+++..+++++|||++|+.||++.. .++..|+|+++|++|+|+|+.+|++
T Consensus 160 ~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg~ev~e~~~~~----------l~~~gl~~tvvv~~tsd~s~~~r~r 229 (432)
T PRK06793 160 GIFAGSGVGKSTLLGMIAKNAKADINVISLVGERGREVKDFIRKE----------LGEEGMRKSVVVVATSDESHLMQLR 229 (432)
T ss_pred EEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCcccHHHHHHHH----------hhhcccceeEEEEECCCCCHHHHHH
Confidence 999999999999999999999999999999999999999998752 2334499999999999999999999
Q ss_pred HHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCcee
Q 010179 329 SIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVT 408 (516)
Q Consensus 329 a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT 408 (516)
++++|+++||||||+|+||||++||+||||+|+|||++++||+|+. |||+++|+.+++|+||||+. ++||||
T Consensus 230 a~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~reisl~~~e~p~~-G~~~~~~s~l~~L~ERag~~-------~~GSiT 301 (432)
T PRK06793 230 AAKLATSIAEYFRDQGNNVLLMMDSVTRFADARRSVDIAVKELPIG-GKTLLMESYMKKLLERSGKT-------QKGSIT 301 (432)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEecchHHHHHHHHHHHHHhcCCCCC-CeeeeeeccchhHHHHhccC-------CCcceE
Confidence 9999999999999999999999999999999999999999999996 99999999999999999985 579999
Q ss_pred EEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHh
Q 010179 409 IVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQR 488 (516)
Q Consensus 409 ~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~ 488 (516)
++++|++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++
T Consensus 302 ~~~tvlv~~dD~~dpI~d~~~si~DG~ivLsr~la~~g~~PAIDv~~S~SR~~~~~------~~~~~~~~a~~~r~~la~ 375 (432)
T PRK06793 302 GIYTVLVDGDDLNGPVPDLARGILDGHIVLKRELATLSHYPAISVLDSVSRIMEEI------VSPNHWQLANEMRKILSI 375 (432)
T ss_pred EEEEEEecCCCCCCcchHHhhhhcceEEEEcHHHHhCCCCCccCCCcccCcCcccc------CCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998 899999999999999999
Q ss_pred hhhHHHHHHcCCCcc
Q 010179 489 EDDLNEIVQVGYLWS 503 (516)
Q Consensus 489 y~e~~~li~~G~~~~ 503 (516)
|+|+++++++|....
T Consensus 376 y~e~e~~i~~g~y~~ 390 (432)
T PRK06793 376 YKENELYFKLGTIQE 390 (432)
T ss_pred ChHHHHHHHhCCccC
Confidence 999999999986543
No 44
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=100.00 E-value=2e-88 Score=721.36 Aligned_cols=371 Identities=28% Similarity=0.453 Sum_probs=341.6
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEc---CC--ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcce
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG---HD--NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLS 90 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~---~~--~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~ls 90 (516)
...+.+|+|++|.|++++++|. .+++||+|.|. ++ .+.|||++|+++++.+|||++++||++|++|.+||++++
T Consensus 14 ~~~~~~G~v~~i~G~~i~~~~~-~~~ige~~~i~~~~~~~~~~~~EVi~~~~~~~~l~~~~~~~gl~~g~~V~~tg~~~~ 92 (438)
T PRK07721 14 DPYKRYGKVSRVIGLMIESKGP-ESSIGDVCYIHTKGGGDKAIKAEVVGFKDEHVLLMPYTEVAEIAPGCLVEATGKPLE 92 (438)
T ss_pred CccceecEEEEEECcEEEEEEC-CCCchheEEEEecCCCCceEEEEEEEEcCCEEEEEEccCccCCCCCCEEEECCCccE
Confidence 3367899999999999999985 79999999994 22 489999999999999999999999999999999999999
Q ss_pred eecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccC
Q 010179 91 VELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVAL 170 (516)
Q Consensus 91 VpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~ 170 (516)
||+|++|||||||++|+|||+.+.. .+
T Consensus 93 v~vg~~llGRv~d~~G~plD~~~~~-------~~---------------------------------------------- 119 (438)
T PRK07721 93 VKVGSGLIGQVLDALGEPLDGSALP-------KG---------------------------------------------- 119 (438)
T ss_pred EEechhhcCCEECcCCCccCCCCCC-------Cc----------------------------------------------
Confidence 9999999999999999999973200 00
Q ss_pred CCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccc
Q 010179 171 PPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCA 249 (516)
Q Consensus 171 pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~ 249 (516)
..+||+.. |+++.+|.++++||.||+++||.++|+++||+++
T Consensus 120 -------------------------------------~~~~~i~~~~p~p~~R~~i~~~l~tg~~vid~l~~i~~Gq~i~ 162 (438)
T PRK07721 120 -------------------------------------LAPVSTDQDPPNPLKRPPIREPMEVGVRAIDSLLTVGKGQRVG 162 (438)
T ss_pred -------------------------------------cccCCccCCCCChhhccCcccccccchhhhheeeeecCCcEEE
Confidence 01234432 3346899999999999999999999999999999
Q ss_pred cCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHH
Q 010179 250 IPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREAS 329 (516)
Q Consensus 250 I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a 329 (516)
|+|++|+|||+|+++|+++.+++..+++++|||++|+.+|+++. .+...++|+++|++|+|+|+.+|+++
T Consensus 163 I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~----------l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 163 IFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERD----------LGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred EECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhh----------cChhhhcCeEEEEECCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999998751 23445899999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeE
Q 010179 330 IYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTI 409 (516)
Q Consensus 330 ~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~ 409 (516)
+|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++++||+++. ++||||+
T Consensus 233 ~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l~~ller~~~~-------~~GsIT~ 305 (438)
T PRK07721 233 AYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLERTGTN-------ASGSITA 305 (438)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHHHHHHHHhcCC-------CCCCeee
Confidence 999999999999999999999999999999999999999999999999999999999999999963 5799999
Q ss_pred EEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhh
Q 010179 410 VGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRE 489 (516)
Q Consensus 410 i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y 489 (516)
|+||+++++|++||++|++++++||||+||++||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|
T Consensus 306 ~~TVlv~~hdm~e~i~d~v~~i~dG~Ivls~~la~~g~~PAIdv~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y 379 (438)
T PRK07721 306 FYTVLVDGDDMNEPIADTVRGILDGHFVLDRQLANKGQYPAINVLKSVSRVMNHI------VSPEHKEAANRFRELLSTY 379 (438)
T ss_pred EEEEEEECCCCCchhhhhEEEecCEEEEEeccHHHCCCCCccCCccccccccccc------CCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988 8999999999999999999
Q ss_pred hhHHHHHHcCC
Q 010179 490 DDLNEIVQVGY 500 (516)
Q Consensus 490 ~e~~~li~~G~ 500 (516)
+|++++|++|.
T Consensus 380 ~e~~~li~~g~ 390 (438)
T PRK07721 380 QNSEDLINIGA 390 (438)
T ss_pred HHHHHHHHhhC
Confidence 99999999887
No 45
>PRK06315 type III secretion system ATPase; Provisional
Probab=100.00 E-value=5.3e-88 Score=716.25 Aligned_cols=374 Identities=29% Similarity=0.434 Sum_probs=341.8
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEcC-C--ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH-D--NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVE 92 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~-~--~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVp 92 (516)
...+.+|||++|.|+++++.|. .+++||+|.|.. + .+.|||++|+++.+.+++|++++||++|++|.++|++++||
T Consensus 19 ~~~~~~G~v~~i~g~~~~~~~~-~~~~ge~~~i~~~~~~~~~~eVv~~~~~~~~l~~~~~~~gi~~g~~V~~~g~~~~v~ 97 (442)
T PRK06315 19 QLTTVVGRITEVVGMLIKAVVP-DVRVGEVCLVKRHGMEPLVTEVVGFTQNFVFLSPLGELTGVSPSSEVIPTGLPLHIR 97 (442)
T ss_pred CcceeccEEEEEECCEEEEEEC-CcccCCEEEEecCCCCEEEEEEEEEcCCeEEEEEccCCcCCCCCCEEEeCCCccEEE
Confidence 3467889999999999999985 699999999943 3 48999999999999999999999999999999999999999
Q ss_pred cCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCC
Q 010179 93 LGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPP 172 (516)
Q Consensus 93 vG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp 172 (516)
+|++|||||||++|||||+.. . +++. .
T Consensus 98 vg~~llGrv~d~~G~pld~~~---~----------~~~~---------------------------------------~- 124 (442)
T PRK06315 98 AGNGLLGRVLNGLGEPIDTET---K----------GPLE---------------------------------------N- 124 (442)
T ss_pred ecccccCCEEeccCccccccc---C----------CCcc---------------------------------------c-
Confidence 999999999999999999731 0 0000 0
Q ss_pred CCCCceEEecCCCCccccceEEEEEEcCeeeeeecccccccc-CCCCcccccCCCccccccccccccccccccCCccccC
Q 010179 173 DAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVR-TPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIP 251 (516)
Q Consensus 173 ~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~-~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~ 251 (516)
...+||+. .|+++++|.++++||+||||+||.++|+++|||++||
T Consensus 125 ----------------------------------~~~~~~i~~~~~~~~~R~~~~e~l~TGi~aID~~l~i~~Gq~i~I~ 170 (442)
T PRK06315 125 ----------------------------------VDETYPIFRAPPDPLHRAKLRTILSTGVRCIDGMLTVARGQRIGIF 170 (442)
T ss_pred ----------------------------------ccceeeeecCCCChHHcccccccccceEEEEeccccccCCcEEEEE
Confidence 00235653 3445789999999999999999999999999999999
Q ss_pred CCCCCCchHhHHHhhhcc-CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHH
Q 010179 252 GAFGCGKTVISQALSKYS-NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASI 330 (516)
Q Consensus 252 g~~g~GKT~Ll~~ia~~~-~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~ 330 (516)
|++|+|||+|+.+|+++. .++..|+++||||++|+.+|.++. + +. ..++++++|++||+++|.+|+.++
T Consensus 171 G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~------l---~~-~g~~~svvvvats~q~p~~rlnp~ 240 (442)
T PRK06315 171 AGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGD------L---GE-EGMKRSVIVVSTSDQSSQLRLNAA 240 (442)
T ss_pred CCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHH------H---Hh-cCCceEEEEEeCCCCCHHHHhhHH
Confidence 999999999999999876 568789999999999999998762 1 22 458999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEE
Q 010179 331 YTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIV 410 (516)
Q Consensus 331 ~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i 410 (516)
++|+++|||||++|++||+++||+||||+|+|||++++||||.++||||++||.|++|+||||+. ++||||+|
T Consensus 241 ~va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~l~~llERag~~-------~~GSITai 313 (442)
T PRK06315 241 YVGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFSTLPKLLERSGAS-------DKGTITAF 313 (442)
T ss_pred HHHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhHhHHHHHHhcCC-------CCcceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999974 58999999
Q ss_pred EEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhh
Q 010179 411 GAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQRED 490 (516)
Q Consensus 411 ~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~ 490 (516)
|||++++||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++++.++|++|++|+
T Consensus 314 ~tVl~~gdD~~dpi~d~~~~i~dg~ivLsr~la~~g~~Paidv~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~ 387 (442)
T PRK06315 314 YTVLVAGDDMNEPVADEVKSILDGHIVLSNALAQAYHYPAIDVLASISRLLTAI------VPEEQRRIIGKAREVLAKYK 387 (442)
T ss_pred EEEEecCCCCCcccHHHhhhhcceEEEEeccHHHcCCCCCccchhhhcccchhc------CCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999987 89999999999999999999
Q ss_pred hHHHHHHcCC
Q 010179 491 DLNEIVQVGY 500 (516)
Q Consensus 491 e~~~li~~G~ 500 (516)
|++++|++|.
T Consensus 388 e~e~li~~g~ 397 (442)
T PRK06315 388 ANEMLIRIGE 397 (442)
T ss_pred hhHHHHHhcC
Confidence 9999999886
No 46
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=100.00 E-value=4.5e-87 Score=669.99 Aligned_cols=236 Identities=28% Similarity=0.418 Sum_probs=224.5
Q ss_pred cccccCC-CCcccccCCCccccccccccccccccccCCccccCCCCCCCchHhHHHhhhccC------CCEEEEEeeCCc
Q 010179 210 AWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN------SDTVVYVGCGER 282 (516)
Q Consensus 210 ~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~------~d~~V~~~iGeR 282 (516)
+||+..+ +++++|.+++|||+||||+||+|+|||||||++|||++|+|||+|+.||++|.+ +|+|||++||||
T Consensus 33 ~~~i~~~ap~~~~R~~i~e~l~TGIkaID~l~pig~GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR 112 (276)
T cd01135 33 YLDINGPPINPVARIYPEEMIQTGISAIDGMNTLVRGQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGIT 112 (276)
T ss_pred eeeccCCCcCchhcCCcccccccCcEeeecccccccCCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccc
Confidence 4566444 457899999999999999999999999999999999999999999999999986 799999999999
Q ss_pred hhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEecchHHHHHH
Q 010179 283 GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEAL 361 (516)
Q Consensus 283 ~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A~ 361 (516)
+||+.||++++ .++++|+||++|++|+|+||.+|++++|+|+|+||||||+ |+|||+++||+||||+|+
T Consensus 113 ~rev~e~~~~~----------~~~~~l~~tv~v~~t~~~~~~~r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~A~ 182 (276)
T cd01135 113 MEDARFFKDDF----------EETGALERVVLFLNLANDPTIERIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAEAL 182 (276)
T ss_pred cHHHHHHHHHh----------hhcCCcceEEEEEecCCCCHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHHHH
Confidence 99999999975 5678999999999999999999999999999999999997 999999999999999999
Q ss_pred HHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHh
Q 010179 362 REISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKK 441 (516)
Q Consensus 362 reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~ 441 (516)
||||+++||||+++||||++|+.|++|+||||+++ .++||||+|++|++|+||++|||+|++++||||||+|||+
T Consensus 183 rEisl~~gepP~~~gyp~~vf~~~~~l~ERag~~~-----~~~GSITa~~~V~~~~dD~~dpi~~~~~si~DG~ivLsr~ 257 (276)
T cd01135 183 REISAAREEVPGRRGYPGYMYTDLATIYERAGRVE-----GRNGSITQIPILTMPNDDITHPIPDLTGYITEGQIVLDRQ 257 (276)
T ss_pred HHHHhccCCCCCccCcCccHHHHhhHHheecccCC-----CCCeeEEEEEEEEccCCCcCcchHHHHHhhcceEEEEcHH
Confidence 99999999999999999999999999999999874 1479999999999999999999999999999999999999
Q ss_pred hhhcCCCCCCccccccccc
Q 010179 442 LAQRKHFPSVNWLISYSKY 460 (516)
Q Consensus 442 La~~g~yPAId~l~S~SR~ 460 (516)
||++||||||||+.|+||+
T Consensus 258 la~~g~~PAID~l~S~SR~ 276 (276)
T cd01135 258 LHNRGIYPPINVLPSLSRL 276 (276)
T ss_pred HHhCCCCCCcCCcccccCC
Confidence 9999999999999999994
No 47
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=100.00 E-value=8.6e-86 Score=661.63 Aligned_cols=237 Identities=32% Similarity=0.508 Sum_probs=226.0
Q ss_pred ccccccCCCC-cccccCCCccccccccccccccccccCCccccCCCCCCCchHhHHHhhhccC---CCEEEEEeeCCchh
Q 010179 209 QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SDTVVYVGCGERGN 284 (516)
Q Consensus 209 ~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~---~d~~V~~~iGeR~~ 284 (516)
++||++.++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+|+++++++.. .+++||++||||++
T Consensus 32 ~~~~i~~~~p~~~~R~~~~e~L~TGIr~ID~l~pig~GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~ 111 (274)
T cd01133 32 KTWPIHREAPEFVEQSTKTEILETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR 111 (274)
T ss_pred ccccccCCCCCchhhcCcCcccccCceeeeccCCcccCCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH
Confidence 4688866665 7899999999999999999999999999999999999999999999988754 78999999999999
Q ss_pred HHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEecchHHHHHHHH
Q 010179 285 EMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALRE 363 (516)
Q Consensus 285 Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A~re 363 (516)
||+||++++ .++++|+||+||++|+|+||.+|++++|+|+|+||||||+ |+||||++||+||||+|+||
T Consensus 112 Ev~e~~~~~----------~~~~~~~~tvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~A~re 181 (274)
T cd01133 112 EGNDLYHEM----------KESGVLSKTALVYGQMNEPPGARARVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSE 181 (274)
T ss_pred HHHHHHHHH----------HhcCCcceeEEEEECCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEeChhHHHHHHHH
Confidence 999999985 5678899999999999999999999999999999999998 99999999999999999999
Q ss_pred HHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhh
Q 010179 364 ISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLA 443 (516)
Q Consensus 364 is~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La 443 (516)
||+++||+|+++||||++|+.|++||||||+. ++||||+|++|++|+||++|||+|++++|+||||+|||+||
T Consensus 182 is~~~ge~p~~~gyp~~~f~~~~~l~ERag~~-------~~GSiT~~~~v~~~~dD~~dpi~~~~~~i~dg~ivLsr~la 254 (274)
T cd01133 182 VSALLGRMPSAVGYQPTLATEMGALQERITST-------KKGSITSVQAVYVPADDLTDPAPATTFAHLDATTVLSRAIA 254 (274)
T ss_pred HHHHcCCCCCCcCcCccHHHHHHHHHHHhcCC-------CCcccceEEEEEecCCCCCCchHHHHHHhcceEEEEcHHHH
Confidence 99999999999999999999999999999963 68999999999999999999999999999999999999999
Q ss_pred hcCCCCCCccccccccchh
Q 010179 444 QRKHFPSVNWLISYSKYST 462 (516)
Q Consensus 444 ~~g~yPAId~l~S~SR~~~ 462 (516)
++||||||||++|+||+|+
T Consensus 255 ~~g~~PAId~~~S~SR~~~ 273 (274)
T cd01133 255 ELGIYPAVDPLDSTSRILD 273 (274)
T ss_pred hCCCCCCcCCccchhcccC
Confidence 9999999999999999875
No 48
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=100.00 E-value=3.1e-85 Score=656.67 Aligned_cols=238 Identities=27% Similarity=0.380 Sum_probs=226.0
Q ss_pred cccccCCCC-cccccCCCccccccccccccccccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHH
Q 010179 210 AWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEM 286 (516)
Q Consensus 210 ~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev 286 (516)
+||+..++| +++|.++++||+||||+||+|+|||||||++|||++|+|||+| +++|+++.++|+ +||++||||++|+
T Consensus 33 ~~~i~~~~p~~~~R~~i~e~L~TGI~~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iGer~~ev 112 (274)
T cd01132 33 RRPIESKAPGIIPRKSVNEPLQTGIKAIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIGQKASTV 112 (274)
T ss_pred eeeccCCCCChhhcCCcccccccCCEEeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecccchHHH
Confidence 578866555 7899999999999999999999999999999999999999999 578999988888 5999999999999
Q ss_pred HHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHh
Q 010179 287 AEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISG 366 (516)
Q Consensus 287 ~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~ 366 (516)
+||++++ .+.+.|+||++|++|+|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+
T Consensus 113 ~e~~~~~----------~~~~~~~~tvvv~~t~d~~~~~r~~a~~~a~aiAE~fr~~G~~Vlvl~DslTr~A~A~rEisl 182 (274)
T cd01132 113 AQVVKTL----------EEHGAMEYTIVVAATASDPAPLQYLAPYTGCAMGEYFMDNGKHALIIYDDLSKQAVAYRQMSL 182 (274)
T ss_pred HHHHHHH----------HhcCccceeEEEEeCCCCchhHHHHHHHHHHHHHHHHHHCCCCEEEEEcChHHHHHHHHHHHH
Confidence 9999985 567889999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcC
Q 010179 367 RLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRK 446 (516)
Q Consensus 367 ~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g 446 (516)
++||+|+++||||++|+.+++|+||||++++. .++||||+|++|++|+||++|||+|++++|+||||+|||+||++|
T Consensus 183 ~~ge~P~~~gYp~~~f~~~~~L~ERag~~~~~---~~~GSIT~i~~V~~~~dD~~~pi~~~~~~i~dg~ivLsr~la~~g 259 (274)
T cd01132 183 LLRRPPGREAYPGDVFYLHSRLLERAAKLNDE---LGGGSLTALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNKG 259 (274)
T ss_pred hcCCCCCCcCcCchHHHHhHHHHHHhhhccCC---CCCcceEEEEEEEcCCCCcCcchHHHHHhhcCeEEEEcHHHHhCC
Confidence 99999999999999999999999999998642 257999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccccc
Q 010179 447 HFPSVNWLISYSKY 460 (516)
Q Consensus 447 ~yPAId~l~S~SR~ 460 (516)
|||||||+.|+||+
T Consensus 260 ~yPaId~l~S~SR~ 273 (274)
T cd01132 260 IRPAINVGLSVSRV 273 (274)
T ss_pred CCCCcCCcccccCC
Confidence 99999999999995
No 49
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=4.5e-85 Score=677.51 Aligned_cols=395 Identities=26% Similarity=0.358 Sum_probs=367.8
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|++.|+++|++|+...+....|+|++|.++++++.|+.+++.||++++. +++.|.++++++|.|.+..+++.+.|+.|+
T Consensus 8 i~~~i~~~i~~~~~~~~~~~~g~V~sv~DgIa~v~Gl~~~~~~E~~ef~-~~v~G~alnle~d~VG~vi~g~~~~i~eG~ 86 (504)
T COG0056 8 ISSLIKQQIENFDVEAEVKEVGTVISVGDGIARVSGLENVMAGELVEFP-GGVKGMALNLEEDSVGAVILGDYSDIKEGD 86 (504)
T ss_pred HHHHHHHHHHhcchhhhhhccceEEEEecceEEEecCchhhcCceEEec-CCcEEEEEeccccceeEEEecCCccccCCc
Confidence 4688999999999999999999999999999999999999999999997 668999999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
.|..||+-++||+|++|||||+|.+|+|+|+.++. +..
T Consensus 87 ~v~~Tg~i~~Vpvg~~llGRVVn~lG~pidgkg~i---------------~~~--------------------------- 124 (504)
T COG0056 87 EVKRTGRILEVPVGEELLGRVVDALGNPIDGKGPI---------------DAT--------------------------- 124 (504)
T ss_pred EEEeeCceEEEecchhhcceeecCCCCccCCCCCc---------------ccc---------------------------
Confidence 99999999999999999999999999999985421 100
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l 239 (516)
...|+..+.| +++|.+.++||+||||+||+|
T Consensus 125 ------------------------------------------------~~~~~e~~Apgv~~RksV~ePlqTGikaIDam 156 (504)
T COG0056 125 ------------------------------------------------KTRPVEKKAPGVMDRKSVNEPLQTGIKAIDAL 156 (504)
T ss_pred ------------------------------------------------ccCccccccCceecccccCchhhhhhHHHhhh
Confidence 1223433334 889999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHhHH-HhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEe
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQ-ALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~-~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ 317 (516)
+|||||||.+|+|+.++|||.++. .|.||.+.++ |||++||++.+.|.++++.| ++.++|++|+||++
T Consensus 157 iPIGRGQRELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL----------~e~gAmdyTiVV~A 226 (504)
T COG0056 157 IPIGRGQRELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTL----------EEHGAMDYTIVVAA 226 (504)
T ss_pred cccCCCceEEEeccCcCCcchhhHHHHHhcccCCcEEEEEEcccchHHHHHHHHHH----------HHcCCccceEEEEe
Confidence 999999999999999999999987 8999999998 99999999999999999974 67899999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc
Q 010179 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC 397 (516)
Q Consensus 318 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~ 397 (516)
++++|+..+|++||+|||+|||||++|+|||+++||||++|.||||||+++++||+||+|||++|..+++|+|||++++.
T Consensus 227 sASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLERAakl~~ 306 (504)
T COG0056 227 SASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLERAAKLSD 306 (504)
T ss_pred cCCcchhhhhhhhhhhhHHHHHHHhcCCeEEEEecCchHHHHHHHHHHHHhcCCCCccCCCCceeehhHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred CCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHH
Q 010179 398 LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN 477 (516)
Q Consensus 398 ~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~ 477 (516)
..++||||+++.+.+.+||++..||.|+.||+||||+|+.+|+++|+.||||+..|+||+....| .....+
T Consensus 307 ---e~g~GSiTALPIIETqagDvSAyIpTNVISITDGQIfl~t~LFn~G~rPAInvGlSVSRvGssAQ------~kamkk 377 (504)
T COG0056 307 ---ELGGGSITALPIIETQAGDVSAYIPTNVISITDGQIFLETDLFNAGIRPAINVGLSVSRVGSAAQ------IKAMKK 377 (504)
T ss_pred ---ccCCCceEeeeeEEeccCceeeecccceEEecCCcEEeehhhhhcCCCccccCCceeeccchHHH------HHHHHH
Confidence 23579999999999999999999999999999999999999999999999999999999999873 456788
Q ss_pred HHHHHHHHHHhhhhHHHHHHcCCCcccc
Q 010179 478 IRTKAREVLQREDDLNEIVQVGYLWSLS 505 (516)
Q Consensus 478 ~~~~~r~~L~~y~e~~~li~~G~~~~~~ 505 (516)
++..+|..|++|+|++.+.++|.|.+.+
T Consensus 378 vag~lrl~laqYrel~afsqf~sdLd~~ 405 (504)
T COG0056 378 VAGSLRLILAQYRELEAFSQFGSDLDKA 405 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhCHH
Confidence 9999999999999999999999998754
No 50
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-84 Score=661.63 Aligned_cols=374 Identities=31% Similarity=0.478 Sum_probs=341.6
Q ss_pred eeeEEEEEECceEEEEeCC---CCccccEEEEcCC---ceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCcceee
Q 010179 20 EYGYVRKVSGPVVIADGMN---GAAMYELVRVGHD---NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVE 92 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~---~~~iGE~v~I~~~---~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVp 92 (516)
..|+|++|.|+++.+++.. -+.++..+++..+ .+..||.+ +.++.|..+.+++|+||.+|+.|..||+|++||
T Consensus 2 ~~G~vvqv~g~VvdV~F~~~~~lP~I~naL~~~~~~~~~~~leV~q~lg~~~VR~Iam~~t~gl~rg~~v~dtg~pi~VP 81 (468)
T COG0055 2 NKGKVVQVIGPVVDVEFPEEDELPEIYNALEVQNGNQGTLVLEVAQHLGDNVVRTIAMGSTDGLVRGLEVIDTGKPISVP 81 (468)
T ss_pred CCceEEEEEeeEEEEEecCcccCchhhhhheeccCCcceEeeehHHHhCCCeEEEEEecCccCcccCcEEecCCCceEEe
Confidence 3699999999999999852 3789999998754 37889987 566688999999999999999999999999999
Q ss_pred cCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCC
Q 010179 93 LGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPP 172 (516)
Q Consensus 93 vG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp 172 (516)
||++.||||||.+|+|||+.++ +.. .
T Consensus 82 VG~~~lgri~nvlG~~iD~~~~---------------~~~---------------------------------------~ 107 (468)
T COG0055 82 VGKGTLGRIFNVLGEPIDEKGP---------------IKA---------------------------------------E 107 (468)
T ss_pred cchhhcccchhccCCcccccCC---------------CCc---------------------------------------c
Confidence 9999999999999999997421 100 0
Q ss_pred CCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCC-CccccccccccccccccccCCccccC
Q 010179 173 DAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAA-DTPLLTGQRVLDALFPSVLGGTCAIP 251 (516)
Q Consensus 173 ~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~-~epl~TGiraID~l~pigkGqr~~I~ 251 (516)
...+||+++++|.++.+.. +|.|+||||+||+|+|+.||+++|+|
T Consensus 108 ----------------------------------~~~~~~Ih~~~p~~~e~~~~~EIleTGIKVIDll~P~~kGgKiGLF 153 (468)
T COG0055 108 ----------------------------------DFEKWPIHRKAPSFEELSTKTEILETGIKVIDLLAPYAKGGKIGLF 153 (468)
T ss_pred ----------------------------------ccceeeccCCCCchhhcccchhhhhhCceEEEEecccccCceeeee
Confidence 0136899888887766655 58999999999999999999999999
Q ss_pred CCCCCCchHhHHHhhhc---cCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHH
Q 010179 252 GAFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREA 328 (516)
Q Consensus 252 g~~g~GKT~Ll~~ia~~---~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~ 328 (516)
||+|+|||+|+++|++| .+..+.||+++|||.||..|+++++ .+++++++|++|.++||+||++|++
T Consensus 154 GGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtREGndLy~Em----------~es~vl~ktalv~gQMNEpPGaR~R 223 (468)
T COG0055 154 GGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEM----------KESGVLDKTALVFGQMNEPPGARMR 223 (468)
T ss_pred ccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccchHHHHHHH----------HhcCCCCceeEEEeecCCCCcceee
Confidence 99999999999999987 4678999999999999999999985 5678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCce
Q 010179 329 SIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSV 407 (516)
Q Consensus 329 a~~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSI 407 (516)
.+++++|+||||||+ |+||||++|+++||.+|.+|+|.++|++|+.-||+|.|.+++..|.||... ++.|||
T Consensus 224 ValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERIts-------tk~GSI 296 (468)
T COG0055 224 VALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERITS-------TKKGSI 296 (468)
T ss_pred ehhhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCccccccCchhHHHHHHHHHHHhc-------CCCCce
Confidence 999999999999995 999999999999999999999999999999999999999999999999985 478999
Q ss_pred eEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHH
Q 010179 408 TIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQ 487 (516)
Q Consensus 408 T~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~ 487 (516)
|++++|++|+||+|||.|.++++|||..++|||++|+.|+|||||||.|.|| .|+|.+ ++++|++++++++++|+
T Consensus 297 TSiQavyvPaDDlTDPapattFaHLDat~vLsR~ia~~GIyPAvDPL~StSr---~l~p~i--vGe~Hy~va~~vq~iLq 371 (468)
T COG0055 297 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSR---ALDPKI--VGEEHYEVAREVQSILQ 371 (468)
T ss_pred EEEEEEEeccccCCCcchhhhhhhcccceeeeHhHHhcCCCcccCccccccc---ccCccc--ccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 566776 89999999999999999
Q ss_pred hhhhHHHHHH-cCCCcc
Q 010179 488 REDDLNEIVQ-VGYLWS 503 (516)
Q Consensus 488 ~y~e~~~li~-~G~~~~ 503 (516)
+|+||+|||+ ||+|-+
T Consensus 372 rYkeLqDIIaILGmdEL 388 (468)
T COG0055 372 RYKELQDIIAILGMDEL 388 (468)
T ss_pred HHHHHHHHHHHhCchhc
Confidence 9999999999 998853
No 51
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=100.00 E-value=2.6e-82 Score=651.44 Aligned_cols=268 Identities=31% Similarity=0.451 Sum_probs=257.0
Q ss_pred cccccCCC-CcccccCCCccccccccccccccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHH
Q 010179 210 AWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAE 288 (516)
Q Consensus 210 ~wpv~~~~-p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e 288 (516)
+||+..++ ++++|.++++|+.||+|+||.++|+++|||++|||++|+|||+|+.+|+++.+.+++++++||||++|+.+
T Consensus 33 ~~~i~~~~~~~~~R~~~~~~l~tGi~aiD~l~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~~ev~~ 112 (326)
T cd01136 33 RYPLLRTPPNPLKRRPIDEVLPTGVRAIDGLLTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERGREVRE 112 (326)
T ss_pred cccccCCCcCHHHhccceeEcCCCcEEEeeeeEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCCccHHH
Confidence 57775555 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhc
Q 010179 289 VLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368 (516)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ 368 (516)
|.+++ ..++.++||+||++|+|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||+++++
T Consensus 113 ~~~~~----------~~~~~l~rtvvv~~t~d~~~~~r~~~~~~a~~~AEyfr~~g~~Vll~~Dsltr~a~A~rei~~~~ 182 (326)
T cd01136 113 FIEKD----------LGEEGLKRSVVVVATSDESPLLRVKAAYTATAIAEYFRDQGKDVLLLMDSLTRFAMAQREIGLAA 182 (326)
T ss_pred HHHHH----------HhcCccceEEEEEcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHHHHhc
Confidence 99863 45678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCC
Q 010179 369 AEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHF 448 (516)
Q Consensus 369 ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~y 448 (516)
||+|+++||||++|+.+++||||||+. ++||||+|++|++|+||++|||+|++++|+||||+|||+||++|||
T Consensus 183 ge~p~~~gyp~~~~~~~~~l~ERag~~-------~~GSIT~i~tv~~~gdd~~dpi~~~~~~~~dg~ivL~r~la~~g~~ 255 (326)
T cd01136 183 GEPPTTKGYPPSVFALLPRLLERAGNS-------DKGSITAFYTVLVEGDDLNEPIADAVRSILDGHIVLSRALAAAGHY 255 (326)
T ss_pred CCCCCcCCcChHHHHHhHHHHHHhcCC-------CCCCeeeeeeeeecCCCCCcchHHhhhhccceEEEEcCcHHHcCCC
Confidence 999999999999999999999999986 4699999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 010179 449 PSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 449 PAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 500 (516)
|||||+.|+||+++.+ ++++|++++.++|++|++|+|+++++++|.
T Consensus 256 PAid~~~S~SR~~~~~------~~~~~~~~a~~~r~~l~~y~e~~~~i~~g~ 301 (326)
T cd01136 256 PAIDVLKSISRLMNAV------VTPEHKEAARKLRELLSAYQEVEDLIRIGA 301 (326)
T ss_pred CCcccccccccCcccc------CCHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Confidence 9999999999999987 899999999999999999999999999875
No 52
>KOG1350 consensus F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=100.00 E-value=4.5e-73 Score=567.02 Aligned_cols=379 Identities=27% Similarity=0.423 Sum_probs=332.0
Q ss_pred ceeeeEEEEEECceEEEEeCCC-CccccEEEEc--CCceEEEEEEE-eCCeEEEEEcccccCCCCCCeEEEcCCcceeec
Q 010179 18 ESEYGYVRKVSGPVVIADGMNG-AAMYELVRVG--HDNLIGEIIRL-EGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~-~~iGE~v~I~--~~~l~gEVv~~-~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpv 93 (516)
....|+|+.|.|.++.+.+..+ +.+-..+++. +.++..||.++ .++.+..+.++.|+||.+|+.|..||.|++|||
T Consensus 49 ~~~~G~i~avIGavvDv~F~~~~P~ilNaLev~~~~~~lvlEV~qhlG~n~VR~iAMdgTEGLvRG~~VlDtG~Pi~ipV 128 (521)
T KOG1350|consen 49 KKNKGRIVAVIGAVVDVQFEEGLPPILNALEVKGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPISIPV 128 (521)
T ss_pred cccCCcEEEEEeeeEEEecCCCCcchhhceeecCCCceeeeHHHHHhCcCeEEEEEecCchhhhcCcccccCCCceeeec
Confidence 3468999999999999987543 5566666664 34578899875 555889999999999999999999999999999
Q ss_pred CcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCC
Q 010179 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (516)
Q Consensus 94 G~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~ 173 (516)
|++.||||+|.+|+|+|+.++ ++..+ |
T Consensus 129 G~~tLGRI~NViGePiDerGp---------------i~s~~---~----------------------------------- 155 (521)
T KOG1350|consen 129 GPETLGRIMNVIGEPIDERGP---------------IKSKK---Y----------------------------------- 155 (521)
T ss_pred CHHHHhhHHHhcCCcccccCC---------------ccccc---c-----------------------------------
Confidence 999999999999999998532 21110 1
Q ss_pred CCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCC-CccccccccccccccccccCCccccCC
Q 010179 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAA-DTPLLTGQRVLDALFPSVLGGTCAIPG 252 (516)
Q Consensus 174 ~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~-~epl~TGiraID~l~pigkGqr~~I~g 252 (516)
-|++..+|-+..++. .|.|+||||++|+|.|..||+++|+||
T Consensus 156 -------------------------------------~~IHaeaP~f~e~s~~~eIl~TGIKVvDLLAPYakGGKIGLFG 198 (521)
T KOG1350|consen 156 -------------------------------------SPIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 198 (521)
T ss_pred -------------------------------------cccccCChhHhhhcccHHHHhhcceeeeeecccccCCeeeeec
Confidence 133333444444444 478999999999999999999999999
Q ss_pred CCCCCchHhHHHhhhc---cCCCEEEEEeeCCchhHHHHHHHhcccccc-CCCCCCccCCcceEEEEEeCCCCCHHHHHH
Q 010179 253 AFGCGKTVISQALSKY---SNSDTVVYVGCGERGNEMAEVLMDFPQLTM-TLPDGREESVMKRTTLVANTSNMPVAAREA 328 (516)
Q Consensus 253 ~~g~GKT~Ll~~ia~~---~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~-~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~ 328 (516)
++|+|||+|.++++|| ++.++.||+++|||.||.+++++++-|-.. .+ ++.-++..+|+.+||+||++|.+
T Consensus 199 GAGVGKTVlImELINNiAKaHGGySVF~GvGERTREGNDLY~EM~E~gVI~l-----~~~~SKvaLV~GQMNePPGARaR 273 (521)
T KOG1350|consen 199 GAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINL-----EGETSKVALVYGQMNEPPGARAR 273 (521)
T ss_pred cCCccceeeHHHHHHHHHHhcCCeEEeeccccccccccHHHHHHHhcCeeec-----cCCcceEEEEeeccCCCCCceee
Confidence 9999999999999988 478999999999999999999998755321 12 23347899999999999999999
Q ss_pred HHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCce
Q 010179 329 SIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSV 407 (516)
Q Consensus 329 a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSI 407 (516)
.+.+++|+|||||| .|+||||++|+++||.+|..|+|.++|++|+.-||+|.+.+++..+.||... +++|||
T Consensus 274 V~LTgLTvAEYFRD~egQDVLLFIDNIFRFtQAGSEVSALLGRiPSAVGYQPTLaTdMG~mQERITt-------TkkGSi 346 (521)
T KOG1350|consen 274 VALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITT-------TKKGSI 346 (521)
T ss_pred eeeecccHHHHhhccccceEEEeehhhhhhhccchHHHHHhccCccccccCcccccchhhhhHhhhc-------cccCce
Confidence 99999999999999 5999999999999999999999999999999999999999999999999985 479999
Q ss_pred eEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHH
Q 010179 408 TIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQ 487 (516)
Q Consensus 408 T~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~ 487 (516)
|++++|++|+||++||.|.++++++|...||||.+|+.|+|||+|||.|.||.|+ +.+ +.++|++.++.++++|+
T Consensus 347 TSvQAvYVPADDLtDPaPattFaHLDAttVLSR~iaelgIYPAVDPLDStSrimd---p~i--vG~eHY~vA~~Vqk~LQ 421 (521)
T KOG1350|consen 347 TSVQAVYVPADDLTDPAPATTFAHLDATTVLSRGIAELGIYPAVDPLDSTSRIMD---PNI--VGEEHYNVARGVQKTLQ 421 (521)
T ss_pred eEEEEEEeehhccCCCCccceeeccchhhhhhhhhHhcCCccccCCccccccccC---ccc--cchHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999655 444 89999999999999999
Q ss_pred hhhhHHHHHH-cCCCcc
Q 010179 488 REDDLNEIVQ-VGYLWS 503 (516)
Q Consensus 488 ~y~e~~~li~-~G~~~~ 503 (516)
.|++++|||. +|+|-.
T Consensus 422 ~YKsLQDIIAILGmDEL 438 (521)
T KOG1350|consen 422 DYKSLQDIIAILGMDEL 438 (521)
T ss_pred HHHHHHHHHHHhCchhh
Confidence 9999999999 998853
No 53
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=100.00 E-value=3.6e-71 Score=568.31 Aligned_cols=382 Identities=27% Similarity=0.426 Sum_probs=343.7
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCCCCCe-EEEcCCcceeec
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDP-VLRTHKPLSVEL 93 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~-V~~tg~~lsVpv 93 (516)
.+.|-+|.+|+|+++.|++..++++||+|+|. ++ ...|+|+.++.+.+.+|+|+.|.|+...+. |+++|+++.+++
T Consensus 4 ~~~Y~~i~~i~Gplv~ve~~eg~~y~E~v~i~~~~G~~r~gqVle~~~~~a~vQVfegT~Gl~~~~t~vrF~g~~l~i~v 83 (463)
T COG1156 4 VKEYTTISEIKGPLIIVEGVEGASYGELVEIETPDGEVRRGQVLEVRGDKAVVQVFEGTSGLDTKGTTVRFTGETLKIPV 83 (463)
T ss_pred cceeeeEEEeccceEEEecccCCCcceEEEEECCCCCeeeeeEeeccCceEEEEEeecccCCCCCCceEEEeCceEEEee
Confidence 45788999999999999999999999999996 23 479999999999999999999999999877 999999999999
Q ss_pred CcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCC
Q 010179 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (516)
Q Consensus 94 G~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~ 173 (516)
++.||||+|||+|+|||+.++... +|.+ +|.| .|.
T Consensus 84 s~dllGRifnG~G~PiDggp~i~~----------------------------e~~~---dI~g-------------~~~- 118 (463)
T COG1156 84 SEDLLGRIFNGSGKPIDGGPEIVP----------------------------EDRL---DING-------------API- 118 (463)
T ss_pred cHHhhhhhhcCCCCcCCCCCcCCC----------------------------Cccc---ccCC-------------CCC-
Confidence 999999999999999999653321 1111 1111 111
Q ss_pred CCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCC
Q 010179 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (516)
Q Consensus 174 ~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~ 253 (516)
.+..|..+.++++|||.+||.|.++.+||++.||.+
T Consensus 119 --------------------------------------------NP~aR~yP~efIqTgIsaIDg~NtLvrgQKlPIFSg 154 (463)
T COG1156 119 --------------------------------------------NPYARIYPEEFIQTGISAIDGMNTLVRGQKLPIFSG 154 (463)
T ss_pred --------------------------------------------CchhhhChhhHhhcCccHHhhhhhhhcccccccccC
Confidence 134788899999999999999999999999999999
Q ss_pred CCCCchHhHHHhhhccCCC------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHH
Q 010179 254 FGCGKTVISQALSKYSNSD------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (516)
Q Consensus 254 ~g~GKT~Ll~~ia~~~~~d------~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~ 327 (516)
+|--...|+.+||+|+..+ .+||+++|-...|..-|.++| +..++++|++++.|.+|+|+.+|.
T Consensus 155 SGlphN~LaaqIarQA~v~~~~e~favVfaamGit~eea~fF~~~f----------e~tGal~r~vlflnlA~dp~vEri 224 (463)
T COG1156 155 SGLPHNELAAQIARQATVDGEEEEFAVVFAAMGITHEEALFFMDEF----------EETGALDRAVLFLNLADDPAVERI 224 (463)
T ss_pred CCCchHHHHHHHHHhcccCCCccceeEEEeecCccHHHHHHHHHHH----------HhhhhhhhhHhhhhccCCCceeEe
Confidence 9999999999999997543 499999999999999888875 677899999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCc
Q 010179 328 ASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGS 406 (516)
Q Consensus 328 ~a~~~a~tiAEyfr-d~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GS 406 (516)
..|.+|+|.||||+ ++++|||+++-|+|.||+|+||||.+.+|.|+++|||+||+++|+.+|||||+++ .++||
T Consensus 225 ~tPr~aLt~AEylA~e~~~hVLVilTDMTnyceALREIsaareeVPgrRGYPGymYTdLatiYErAg~i~-----g~~GS 299 (463)
T COG1156 225 ITPRMALTVAEYLAFEKDMHVLVILTDMTNYCEALREISAAREEVPGRRGYPGYMYTDLATIYERAGRIR-----GRKGS 299 (463)
T ss_pred cchhHHHHHHHHHhccCCceEEEEEcchhHHHHHHHHHHhhhccCCCcCCCcchHHHHHHHHHHhhceec-----cCCCc
Confidence 99999999999999 6899999999999999999999999999999999999999999999999999996 37899
Q ss_pred eeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHH
Q 010179 407 VTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVL 486 (516)
Q Consensus 407 IT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L 486 (516)
||.+++.++|+||+||||||+|.+|++|||+|||+|..+|+||+||++.|+||+|+..-.. ++..++|.++++++-+.+
T Consensus 300 iTqipIlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~-g~TReDH~~~snql~a~Y 378 (463)
T COG1156 300 ITQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGE-GKTREDHGDVSNQLYAAY 378 (463)
T ss_pred eEEEEeeecCCCCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCC-CccccccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988865222 126789999999999999
Q ss_pred HhhhhHHHHHH-cCCCccc
Q 010179 487 QREDDLNEIVQ-VGYLWSL 504 (516)
Q Consensus 487 ~~y~e~~~li~-~G~~~~~ 504 (516)
++.++++++.. +|+++.-
T Consensus 379 A~g~d~r~l~avvge~aLs 397 (463)
T COG1156 379 AEGRDLRELVAVVGEEALS 397 (463)
T ss_pred hcchhHHHHHHHhhhhhcc
Confidence 99999999999 7776543
No 54
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=100.00 E-value=2.5e-70 Score=534.33 Aligned_cols=215 Identities=46% Similarity=0.686 Sum_probs=204.0
Q ss_pred ccccccccccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc
Q 010179 231 TGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK 310 (516)
Q Consensus 231 TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~ 310 (516)
||||+||+|+|||||||++|||++|+|||+|+++|+++.++|++||++||||++|++||++++ ++++.++
T Consensus 1 TGir~ID~l~Pig~Gqr~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~iGer~~Ev~~~~~~~----------~~~~~~~ 70 (215)
T PF00006_consen 1 TGIRAIDLLFPIGRGQRIGIFGGAGVGKTVLLQEIANNQDADVVVYALIGERGREVTEFIEEL----------KGEGALE 70 (215)
T ss_dssp -SHHHHHHHSCEETTSEEEEEESTTSSHHHHHHHHHHHCTTTEEEEEEESECHHHHHHHHHHH----------HHTTGGG
T ss_pred CCCceeccccccccCCEEEEEcCcccccchhhHHHHhcccccceeeeeccccchhHHHHHHHH----------hhccccc
Confidence 899999999999999999999999999999999999999999999999999999999999985 5678899
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHH
Q 010179 311 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYE 390 (516)
Q Consensus 311 rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~E 390 (516)
||++|++|+|+||.+|++++|+|+++||||||+|+|||+++||+||||+|+|||++++||+|+++|||+++|+.+++|||
T Consensus 71 ~t~vv~~t~~~~~~~r~~~~~~a~t~AEyfrd~G~dVlli~Dsltr~a~A~reis~~~g~~p~~~Gyp~~~~~~l~~l~E 150 (215)
T PF00006_consen 71 RTVVVAATSDEPPAARYRAPYTALTIAEYFRDQGKDVLLIIDSLTRWAQAYREISLLLGEPPGREGYPPSLFSDLASLYE 150 (215)
T ss_dssp GEEEEEEETTS-HHHHHHHHHHHHHHHHHHHHTTSEEEEEEETHHHHHHHHHHHHHHTTSSBBGGGSBTTHHHHHHHHHT
T ss_pred ccccccccchhhHHHHhhhhccchhhhHHHhhcCCceeehhhhhHHHHHHHHhhhcccccccccccccchhccchhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccc
Q 010179 391 RAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYS 458 (516)
Q Consensus 391 Rag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~S 458 (516)
|||++. ..+++||||++++|++|+||++|||++++++|+|+||+|||+||++||||||||++|+|
T Consensus 151 Rag~~~---~~~~~GSIT~~~~v~~~~~d~~~pi~~~~~~~~dg~i~L~r~la~~~~~PAId~~~S~S 215 (215)
T PF00006_consen 151 RAGKVN---SEEGGGSITAIPTVLVPGDDITDPIPDNTKSILDGHIVLSRKLAERGIFPAIDVLKSVS 215 (215)
T ss_dssp TSEEBS---TTTTSEEEEEEEEEEESTTBTTSHHHHHHHTTSSEEEEB-HHHHHTT-SS-BETTTEEE
T ss_pred Hhhccc---cccCCceeeeecccccccccccchHHHHHHhhcceEEEeCHHHHhCCCCCccCCccCCC
Confidence 999982 23479999999999999999999999999999999999999999999999999999998
No 55
>PRK12608 transcription termination factor Rho; Provisional
Probab=100.00 E-value=5.7e-69 Score=558.33 Aligned_cols=299 Identities=18% Similarity=0.189 Sum_probs=268.3
Q ss_pred ccCCCCCCeEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCC
Q 010179 73 TAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGG 152 (516)
Q Consensus 73 t~GI~~G~~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g 152 (516)
-.||+.|+.|..++++ ++|..+||||+|++|+|+|+... +.|
T Consensus 56 ~~~l~~Gd~V~~~~r~---~~~~~~LgrV~~~~G~p~d~~~~-------------------~~~---------------- 97 (380)
T PRK12608 56 RFNLRTGDVVEGVARP---RERYRVLVRVDSVNGTDPEKLAR-------------------RPH---------------- 97 (380)
T ss_pred HhCCCCCCEEEeccCC---CCChhheEEEeccCCcCchhccc-------------------ccC----------------
Confidence 4689999999999998 99999999999999999997410 000
Q ss_pred cceeeeeccccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccc-cc
Q 010179 153 DLYATVFENSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPL-LT 231 (516)
Q Consensus 153 ~i~g~~~e~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl-~T 231 (516)
+.+ ..|+ .+.+|.++.+++ .+
T Consensus 98 -----------~~~--~~pi---------------------------------------------~p~~R~~ie~~~~~~ 119 (380)
T PRK12608 98 -----------FDD--LTPL---------------------------------------------HPRERLRLETGSDDL 119 (380)
T ss_pred -----------cCc--CCCC---------------------------------------------CccccccccccCcch
Confidence 001 1111 235677787777 89
Q ss_pred cccccccccccccCCccccCCCCCCCchHhHHHhhhcc---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccC
Q 010179 232 GQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREES 307 (516)
Q Consensus 232 GiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~---~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~ 307 (516)
|+|+||+|+|||||||++|+|++|+|||||+++|+++. +.|+ +++++||||++|+.+|++.+
T Consensus 120 ~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i-------------- 185 (380)
T PRK12608 120 SMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSV-------------- 185 (380)
T ss_pred hHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHH--------------
Confidence 99999999999999999999999999999999998764 3477 69999999999999999852
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHH
Q 010179 308 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLAS 387 (516)
Q Consensus 308 ~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~ 387 (516)
..+|+++++|+|+..|.+++++++++||||+++|+||+|++||+||||+|+||++++.||+|+ +|||+++|+.+++
T Consensus 186 ---~~~Vvast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A~A~rei~~~~G~~~s-~G~~~s~~~~~~r 261 (380)
T PRK12608 186 ---KGEVYASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLARAYNNEVESSGRTLS-GGVDARALQRPKR 261 (380)
T ss_pred ---hhhEEeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHHHHHHhhhcccCCCCC-CCcChHHHhhhHH
Confidence 127889999999999999999999999999999999999999999999999999999999999 8999999999999
Q ss_pred HHHhhcCcccCCCCCCCCceeEEEEEecC-CCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhh
Q 010179 388 FYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 466 (516)
Q Consensus 388 l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~ 466 (516)
|+||||+++ ++||||+|+||+++ |+|+.|||.++.++++||||+|||+||++|||||||+++|.||.|++|
T Consensus 262 l~~~A~~~~------~~GSiT~i~TvLvetg~~mdd~I~ee~kg~~dg~ivLsR~lA~~~~fPAIDi~~S~sR~~~~l-- 333 (380)
T PRK12608 262 LFGAARNIE------EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMEIVLDRELADKRVFPAIDIAKSGTRREELL-- 333 (380)
T ss_pred HHHhcCCCC------CCcchhheEEEEEecCCCCCcchHHHhcccCCCeEEECHHHHhCCCCCccCcccccCcchhhc--
Confidence 999999973 68999999999999 888899999999999999999999999999999999999999999999
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 467 FYEQFDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 467 ~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
++++|++.++++|++|+.|++++.+-.
T Consensus 334 ----~~~~~~~~~~~~R~~l~~~~~~e~~~~ 360 (380)
T PRK12608 334 ----LDSKELEKVRRLRRALASRKPVEAMEA 360 (380)
T ss_pred ----CCHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 999999999999999999988776543
No 56
>KOG1351 consensus Vacuolar H+-ATPase V1 sector, subunit B [Energy production and conversion]
Probab=100.00 E-value=5.7e-63 Score=490.39 Aligned_cols=391 Identities=26% Similarity=0.384 Sum_probs=343.0
Q ss_pred ccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCCCC-CeE
Q 010179 7 ARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVN-DPV 82 (516)
Q Consensus 7 ~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G-~~V 82 (516)
+-+++|..+.+. .|-+|..|+|+++.......+++.|+|.+. ++ ...|+|+.++++++++|+|+.|+||..- +.|
T Consensus 11 a~~~~~~~~prl-~y~tv~gvngplvild~vkfp~y~eiv~ltlpdgt~r~gqvlev~g~kavvqvfegtsgid~k~t~~ 89 (489)
T KOG1351|consen 11 AVIENYTTEPRL-TYRTVSGVNGPLVILDKVKFPKYAEIVNLTLPDGSVRSGQVLEVSGEKAVVQVFEGTSGIDAKKTTV 89 (489)
T ss_pred HHHhccccCCce-eEeeecccCCceEEEecccccchhhheEEecCCCCeecceEEEecCCeeEEEEeccccccccccceE
Confidence 456777776654 588999999999999888788999999984 33 3689999999999999999999999966 679
Q ss_pred EEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccc
Q 010179 83 LRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENS 162 (516)
Q Consensus 83 ~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~ 162 (516)
.+||+.+..|+++.+|||||||.|+|||+.+.+... |++ ||.|
T Consensus 90 eftg~~lr~pvsedmlgrifngsgkpid~gp~vl~e----------------------------dyl---di~g------ 132 (489)
T KOG1351|consen 90 EFTGEILRTPVSEDMLGRIFNGSGKPIDKGPPVLAE----------------------------DYL---DING------ 132 (489)
T ss_pred EEecccccccccHHHhhhhhcCCCCccCCCCCcChH----------------------------Hhh---ccCC------
Confidence 999999999999999999999999999985432211 111 1221
Q ss_pred cccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCcccccccccccccccc
Q 010179 163 LMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPS 242 (516)
Q Consensus 163 ~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pi 242 (516)
+|..+..|.-+.|+++|||.+||.|..|
T Consensus 133 ----------------------------------------------------qpinp~~riypeemiqtgis~idvmnsi 160 (489)
T KOG1351|consen 133 ----------------------------------------------------QPINPYARIYPEEMIQTGISAIDVMNSI 160 (489)
T ss_pred ----------------------------------------------------CcCCcccccChHHHHHhCchHHhhhhHH
Confidence 1112357888999999999999999999
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccC---------------CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSN---------------SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREES 307 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~---------------~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~ 307 (516)
+|||++.||..+|.....++.+|++|+. ...+||+++|-.-+..+-|..+| .+.+
T Consensus 161 argqkipifsaaglphneiaaqicrqaglvk~~~k~~~d~~~dnfaivfaamgvnmetarffk~df----------eeng 230 (489)
T KOG1351|consen 161 ARGQKIPIFSAAGLPHNEIAAQICRQAGLVKRPEKDVHDGHEDNFAIVFAAMGVNMETARFFKQDF----------EENG 230 (489)
T ss_pred hccCccceeecCCCChhHHHHHHHHhcCccccCCcccccccccceeeeehhhcccHHHHHHHHhhH----------HhcC
Confidence 9999999999999999999999998841 22489999999876666565544 6778
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHH
Q 010179 308 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLA 386 (516)
Q Consensus 308 ~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~ 386 (516)
.|+|++++.|-+|+|..+|...+..|+|.|||++. .+||||+++.|++.||+|+||+|.+..|.|+++|||+||+++|+
T Consensus 231 sm~~v~lflnlandptieriitprlalt~aeflayq~ekhvlviltdmssya~alrevsaareevpgrrg~pgymytdla 310 (489)
T KOG1351|consen 231 SMERVCLFLNLANDPTIERIITPRLALTTAEFLAYQCEKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLA 310 (489)
T ss_pred CccceEEEEecCCCCchhhhcchhhhHhHHHHHHHhhcCeEEEEEeccHHHHHHHHHHHHhhhhCCCcCCCCceehhhHH
Confidence 89999999999999999999999999999999995 69999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhh
Q 010179 387 SFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 466 (516)
Q Consensus 387 ~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~ 466 (516)
.+|||||++++ +.||||.|+++++|.||+++|+||.|.+|++|+|+.||+|+++.+||+||+|.|+||+|+..
T Consensus 311 tiyeragrveg-----r~gsitqipiltmpnddithpipdltgyitegqiyvdrqlhnr~iyppinvlpslsrlmksa-- 383 (489)
T KOG1351|consen 311 TIYERAGRVEG-----RNGSITQIPILTMPNDDITHPIPDLTGYITEGQIYVDRQLHNRQIYPPINVLPSLSRLMKSA-- 383 (489)
T ss_pred HHHHHhccccc-----CCCceeeeeeEecCCcccCCCCCcccceeecceEEEehhhhcccCCCCcccchhHHHHHHHH--
Confidence 99999999973 78999999999999999999999999999999999999999999999999999999988754
Q ss_pred hhhc--CCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCCcccc
Q 010179 467 FYEQ--FDPDFINIRTKAREVLQREDDLNEIVQ-VGYLWSLS 505 (516)
Q Consensus 467 ~~~~--~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~~~~~~ 505 (516)
+++ ..++|-++.+++-..++--++.+.|-. +|+++.-+
T Consensus 384 -igegmtr~dh~dvsnqlya~yaigkdvqamkavvgeeals~ 424 (489)
T KOG1351|consen 384 -IGEGMTRKDHSDVSNQLYACYAIGKDVQAMKAVVGEEALSS 424 (489)
T ss_pred -hcCCcccccchhhHHHHHHHHHhcchHHHHHHHhcccccCh
Confidence 322 568999999999888888899999999 99998643
No 57
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.4e-62 Score=511.90 Aligned_cols=273 Identities=21% Similarity=0.270 Sum_probs=244.3
Q ss_pred eEEEEE-EcCeeeeeeccccccc--cCCCCcccccCCCc--cccccccccccccccccCCccccCCCCCCCchHhHHHhh
Q 010179 192 TVLELE-FQGVKKSFTMLQAWPV--RTPRPVSSKLAADT--PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 192 ~v~~~~-~~g~~~~~~~~~~wpv--~~~~p~~~R~~~~e--pl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
.+.+++ +||...+-. .++-++ -.|..+.+|.++.+ |+.||+|+||+|+|||||||++||||+|+|||||+++|+
T Consensus 112 ~l~~v~~vng~~~~~~-~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ia 190 (416)
T PRK09376 112 ALLKVETVNGEDPEKA-RNRPLFENLTPLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIA 190 (416)
T ss_pred ceEEEeeeCCCCHHHh-cCCCCcccCCCCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHHHHHHH
Confidence 356666 676544311 122223 23445679999988 799999999999999999999999999999999999999
Q ss_pred hccC---CCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010179 267 KYSN---SDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRD 342 (516)
Q Consensus 267 ~~~~---~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd 342 (516)
++.. .|+ +++++||||++|+.++.+.+ . .+||++|+|+||..|++++|+++++||||++
T Consensus 191 n~I~~nhFDv~~~VvLIgER~~EVtdiqrsI----------l-------g~vv~st~d~~~~~~~~~a~~~ie~Ae~~~e 253 (416)
T PRK09376 191 NSITTNHPEVHLIVLLIDERPEEVTDMQRSV----------K-------GEVVASTFDEPAERHVQVAEMVIEKAKRLVE 253 (416)
T ss_pred HHHHhhcCCeEEEEEEeCCchhHHHHHHHHh----------c-------CcEEEECCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8753 477 58899999999999998762 1 3799999999999999999999999999999
Q ss_pred CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecC-CCCCC
Q 010179 343 MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFS 421 (516)
Q Consensus 343 ~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~D~~ 421 (516)
+|+||||++||+||||+||||+++++|++|+ .||+++++..+++||||||+++ ++||||+|+||+++ |+++.
T Consensus 254 ~G~dVlL~iDsItR~arAqrev~~~sG~~~s-gG~~~~~~~~~~r~f~~Arn~e------~~GSlT~i~T~LvetGs~md 326 (416)
T PRK09376 254 HGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKRFFGAARNIE------EGGSLTIIATALIDTGSRMD 326 (416)
T ss_pred cCCCEEEEEEChHHHHHHHHhhhhccCCCCC-CCCChhHhhhhHHHHHhhcCCC------CCcceEEEEEEEecCCCCCC
Confidence 9999999999999999999999999999999 9999999999999999999974 68999999999999 77888
Q ss_pred chhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHH
Q 010179 422 DPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEI 495 (516)
Q Consensus 422 dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~l 495 (516)
|||.+++++++|+||+|||+||++|||||||+++|.||.+++| ++++|++.++++|++|+.|++.+.+
T Consensus 327 d~I~ee~kg~~n~~ivLdR~lA~~r~fPAIDi~~S~sR~~~~l------~~~~~~~~~~~lR~~l~~~~~~e~~ 394 (416)
T PRK09376 327 EVIFEEFKGTGNMELHLDRKLAEKRIFPAIDINRSGTRKEELL------LSPEELQKVWILRKILSPMDEVEAM 394 (416)
T ss_pred ccHHHHHhhhcCceEeECHHHHhcCCCCccCcccccccccccc------CCHHHHHHHHHHHHHHHccCcHHHH
Confidence 9999999999999999999999999999999999999999998 9999999999999999999877654
No 58
>PRK12678 transcription termination factor Rho; Provisional
Probab=100.00 E-value=1.1e-61 Score=520.20 Aligned_cols=264 Identities=23% Similarity=0.285 Sum_probs=234.4
Q ss_pred eEEEEE-EcCeeeeeeccccccccC--CCCcccccCCC-ccccccccccccccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 192 TVLELE-FQGVKKSFTMLQAWPVRT--PRPVSSKLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 192 ~v~~~~-~~g~~~~~~~~~~wpv~~--~~p~~~R~~~~-epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
++++++ +||...+- ..++-++.. |.++.+|+.+. +|+.||+|+||+|+|||||||++||||+|+|||+|+++||+
T Consensus 360 ~l~~v~~vNg~~~e~-~~~r~~F~~Ltp~~P~~R~~le~e~~~~giRvIDll~PIGkGQR~LIvgpp~aGKTtLL~~IAn 438 (672)
T PRK12678 360 PLVRLDSVNGMSPEE-AKKRPEFGKLTPLYPNERLRLETEPKKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQNIAN 438 (672)
T ss_pred eeeeEeeeCCCChHH-hccCCCcccCCCCChHHhcccccCcccccceeeeeecccccCCEeEEeCCCCCCHHHHHHHHHH
Confidence 466777 67765442 223333433 44467999998 89999999999999999999999999999999999999999
Q ss_pred cc---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEE---EEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 010179 268 YS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT---LVANTSNMPVAAREASIYTGITIAEYF 340 (516)
Q Consensus 268 ~~---~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtv---vv~~tsd~~~~~r~~a~~~a~tiAEyf 340 (516)
+. +.++ +||++||||++||++| +||| ||++|+|+||.+|++++|+|+++||||
T Consensus 439 ~i~~n~~~~~~ivvLIgERpeEVtdm--------------------~rsVkgeVVasT~D~p~~~~~~~a~~ai~~Ae~f 498 (672)
T PRK12678 439 AITTNNPECHLMVVLVDERPEEVTDM--------------------QRSVKGEVIASTFDRPPSDHTTVAELAIERAKRL 498 (672)
T ss_pred HHhhcCCCeEEEEEEEeCchhhHHHH--------------------HHhccceEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 64 4555 6799999999999986 3566 999999999999999999999999999
Q ss_pred HHCCCcEEEEEecchHHHHHHHHHHhhcCC-----CCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEec
Q 010179 341 RDMGYNVSMMADSTSRWAEALREISGRLAE-----MPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSP 415 (516)
Q Consensus 341 rd~G~~Vlll~Dsltr~a~A~reis~~~ge-----~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~ 415 (516)
+|+|+|||||+|||||||+||||++...|+ +|+..+|||++|..+++++| ++||||+|+||++
T Consensus 499 re~G~dVlillDSlTR~ArAyrev~~~sGr~lSGG~d~~a~ypP~~F~~~AR~iE------------~gGSLTii~TvLV 566 (672)
T PRK12678 499 VELGKDVVVLLDSITRLGRAYNLAAPASGRILSGGVDSTALYPPKRFFGAARNIE------------NGGSLTIIATALV 566 (672)
T ss_pred HHcCCCEEEEEeCchHHHHHHHHhhcCCCCccCCCCchhhccCccHHHHHHHhhc------------cCccceeeEEEEe
Confidence 999999999999999999999999999999 79999999999988887776 3699999999999
Q ss_pred C-CCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHH
Q 010179 416 P-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNE 494 (516)
Q Consensus 416 ~-~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~ 494 (516)
+ ++++.+||.++.++++|+||+|||+||++||||||||++|+||++++| ++++|++.++++|++|+.|+..+.
T Consensus 567 ETGS~mDd~Ifeefkgtgn~elvLsR~LAerrifPAIDv~~S~SR~ee~l------~~~~e~~~~~~lRr~l~~~~~~~a 640 (672)
T PRK12678 567 ETGSKMDEVIFEEFKGTGNMELKLDRKLADKRIFPAVDVNASGTRKEELL------LSPDELAIVHKLRRVLSGLDSQQA 640 (672)
T ss_pred ccCCccCcchHHHHhhccCceeeECHHHHhCCCCCccCCCcCccccchhh------CCHHHHHHHHHHHHHHHcCCHHHH
Confidence 9 566778999999999999999999999999999999999999999999 999999999999999999976544
No 59
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=100.00 E-value=9.2e-57 Score=469.98 Aligned_cols=238 Identities=21% Similarity=0.267 Sum_probs=222.2
Q ss_pred cccccccccccccccccCCccccCCCCCCCchHhHHHhhhccC---CC-EEEEEeeCCchhHHHHHHHhccccccCCCCC
Q 010179 228 PLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN---SD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDG 303 (516)
Q Consensus 228 pl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~---~d-~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~ 303 (516)
+-..|+|+||+++|||+|||++|+|++|+|||||+.+|++... .+ .++++++|||++|+.+|++.+
T Consensus 151 ~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsI---------- 220 (415)
T TIGR00767 151 TEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSV---------- 220 (415)
T ss_pred ccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHh----------
Confidence 4467999999999999999999999999999999999988632 33 378899999999999999752
Q ss_pred CccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHH
Q 010179 304 REESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAA 383 (516)
Q Consensus 304 ~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s 383 (516)
...||++|+|+|+..|.++++.++++||||+++|+||+|++||+||||+||||+++++||+|+ +||||++|+
T Consensus 221 -------lg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEitR~arAqrei~~~~G~~~s-~G~~~~~~~ 292 (415)
T TIGR00767 221 -------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVTPASGKVLS-GGVDANALH 292 (415)
T ss_pred -------hceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChhHHHHHHHHhHhhcCCCCC-CCcChhhhc
Confidence 247999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHhhcCcccCCCCCCCCceeEEEEEecC-CCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchh
Q 010179 384 RLASFYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYST 462 (516)
Q Consensus 384 ~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~ 462 (516)
.+++|+||||+++ ++||||+|+||+++ |+++.|||.++.++++||||+|||+||++|||||||+++|.||.++
T Consensus 293 ~~~~~~~~a~~~~------~~GSiT~~~TvLvetg~~mdd~i~~e~kg~~~~~ivL~r~la~~~~fPAidi~~S~sR~~~ 366 (415)
T TIGR00767 293 RPKRFFGAARNIE------EGGSLTIIATALIDTGSRMDEVIFEEFKGTGNMELHLDRKLADRRIFPAIDIKKSGTRKEE 366 (415)
T ss_pred ccHHHHhhcCCCC------CCcchhheEEEEeccCCCCCcchHHHhccccCCeEEECHHHHhCCCCCCcCcccccccchh
Confidence 9999999999974 68999999999999 7778889999999999999999999999999999999999999999
Q ss_pred hhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHH
Q 010179 463 ALESFYEQFDPDFINIRTKAREVLQREDDLNEI 495 (516)
Q Consensus 463 ~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~l 495 (516)
++ ++++|++.++++|++|+.|++.+.+
T Consensus 367 ~l------~~~~~~~~~~~~r~~l~~~~~~~~~ 393 (415)
T TIGR00767 367 LL------LTPEELQKIWVLRKIISPMDSIEAM 393 (415)
T ss_pred hc------CCHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99 9999999999999999999776543
No 60
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=100.00 E-value=1.2e-53 Score=425.62 Aligned_cols=236 Identities=21% Similarity=0.282 Sum_probs=220.9
Q ss_pred cccccccccccccCCccccCCCCCCCchHhHHHhhhccCC---CE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccC
Q 010179 232 GQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS---DT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREES 307 (516)
Q Consensus 232 GiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~---d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~ 307 (516)
..|+||+|+|||+|||++|+|++|+|||||+++|+++.+. |+ ++++++|+|++|+.+|++.+
T Consensus 3 ~~~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I-------------- 68 (249)
T cd01128 3 STRVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSV-------------- 68 (249)
T ss_pred chhheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHh--------------
Confidence 4699999999999999999999999999999999987644 55 46677999999999998751
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHH
Q 010179 308 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLAS 387 (516)
Q Consensus 308 ~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~ 387 (516)
++++|++++|+|+..|+++++.++++||||+++|++|+|++|++||||+|+||+++..|++| ..||||++|+.+++
T Consensus 69 ---~~~~v~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~r~a~a~~ev~~~~G~~~-sgG~~~~~~~~~~q 144 (249)
T cd01128 69 ---KGEVIASTFDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSITRLARAYNTVVPPSGKIL-SGGVDANALHKPKR 144 (249)
T ss_pred ---ccEEEEecCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHhhhhhhhccccCCCCC-CCCcChhhhhhhHH
Confidence 67899999999999999999999999999999999999999999999999999999999999 68999999999999
Q ss_pred HHHhhcCcccCCCCCCCCceeEEEEEecC-CCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhh
Q 010179 388 FYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 466 (516)
Q Consensus 388 l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~ 466 (516)
++||||++. ++||||+++|++++ ++++.||+.++.++++|+||+|||+|++.|+||||||+.|.||.++++
T Consensus 145 ~~~~Ar~~~------~~gsIt~l~T~~~d~~~~~~~~i~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr~~~ll-- 216 (249)
T cd01128 145 FFGAARNIE------EGGSLTIIATALVDTGSRMDDVIFEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTRKEELL-- 216 (249)
T ss_pred HHHHhcCCC------CCCceEEeeeheecCCCcccchHHHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCccchhh--
Confidence 999999863 68999999999999 556667999999999999999999999999999999999999998887
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 467 FYEQFDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 467 ~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
.+++|++.+.++|++|+.|++++++..
T Consensus 217 ----~~~~~~~~~~~~r~~~~~~~~~~~~~~ 243 (249)
T cd01128 217 ----LDPEELQRMWLLRRVLSDMDPIEAMEF 243 (249)
T ss_pred ----CCHHHHHHHHHHHHHHHccChHHHHHH
Confidence 789999999999999999999999876
No 61
>COG1158 Rho Transcription termination factor [Transcription]
Probab=100.00 E-value=1.9e-43 Score=356.68 Aligned_cols=232 Identities=23% Similarity=0.294 Sum_probs=210.9
Q ss_pred cccccccccccccCCccccCCCCCCCchHhHHHhhhc---cCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccC
Q 010179 232 GQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY---SNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREES 307 (516)
Q Consensus 232 GiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~---~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~ 307 (516)
.-|+||++.|||||||.+|++||.+|||+|++.||+. .+.++ .++.+|+||++||+|+.+.
T Consensus 160 s~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrs--------------- 224 (422)
T COG1158 160 STRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRS--------------- 224 (422)
T ss_pred hhHHHhhhcccCCCceeeEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHHHHHh---------------
Confidence 4589999999999999999999999999999999986 46777 6888999999999997543
Q ss_pred CcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHH
Q 010179 308 VMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLAS 387 (516)
Q Consensus 308 ~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~ 387 (516)
=+.-||++|.|+||..|.+.+.+.+.-|..+.++|+||++++||+||+|+||+-+.-..|+.-+ .|--+..+.+..+
T Consensus 225 --V~geViaSTFDepp~~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLs-GGvD~nAL~~PKr 301 (422)
T COG1158 225 --VKGEVVASTFDEPPSRHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLS-GGVDANALHRPKR 301 (422)
T ss_pred --hcceEEeecCCCcchhhHHHHHHHHHHHHHHHHcCCcEEEEehhHHHHHHHhcccCCCCCCeec-CCcChhhhcCchh
Confidence 1256999999999999999999999999999999999999999999999999999999998876 4677777888999
Q ss_pred HHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhh-ccccEEEEeeHhhhhcCCCCCCccccccccchhhhhh
Q 010179 388 FYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATL-SIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES 466 (516)
Q Consensus 388 l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~-~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~ 466 (516)
||..|+|++ .|||+|+|+|.++++|+.+|.|..+.+ +.-+..++|||+||++++|||||+.+|.+|..++|
T Consensus 302 FFGAARNIE------eGGSLTIiATALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRKEeLL-- 373 (422)
T COG1158 302 FFGAARNIE------EGGSLTIIATALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELL-- 373 (422)
T ss_pred hhhhhhccc------cCcchhhhhhhhhhcCCccchhhhhhhcCCCceEEEEhhhhhhcccccceecccCCcchHhhc--
Confidence 999999995 899999999999999999998887775 56699999999999999999999999999999998
Q ss_pred hhhcCCHHHHHHHHHHHHHHHhhhhHH
Q 010179 467 FYEQFDPDFINIRTKAREVLQREDDLN 493 (516)
Q Consensus 467 ~~~~~~~~~~~~~~~~r~~L~~y~e~~ 493 (516)
+++++++..+.+|++|+..++.+
T Consensus 374 ----l~~~~l~k~w~lRr~l~~md~~~ 396 (422)
T COG1158 374 ----LSPDELQKMWVLRRILSPMDEID 396 (422)
T ss_pred ----CCHHHHHHHHHHHHHhcCCChHH
Confidence 99999999999999999654443
No 62
>KOG1353 consensus F0F1-type ATP synthase, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=2.5e-38 Score=309.07 Aligned_cols=297 Identities=21% Similarity=0.283 Sum_probs=264.6
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|+|++++||.++.++.+..+.|+|.+|.|++..+.|+.+++-+|++++.+ .+++.-..++.+++.+.+|++..-++.|+
T Consensus 1 ~SsI~EErI~~~~~~a~leEtgrVLsIGdGIArV~GL~nvQAeEmvEFss-GlKgmalnle~~~vg~v~~g~d~~ikeg~ 79 (340)
T KOG1353|consen 1 MSSIFEERIVGDNTSADLEETGRVLSIGDGIARVYGLTNVQAEEMVEFSS-GLKGMALNLEGENVGVVVFGEDSLIKEGD 79 (340)
T ss_pred CchHHHHHhhccccccchhhccceEEEcCceeeeecccccchHHHHhhhc-cccchhccccCCceEEEEEcCcceeccCc
Confidence 68999999999999999999999999999999999999999999999974 48999999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
.|..|+.-..||+|+.||||+.|++|+|+|+.+. +...
T Consensus 80 ~VkrTgaIvDVpvg~~LlgrvvdAlGn~idgkG~---------------i~~~--------------------------- 117 (340)
T KOG1353|consen 80 TVKRTAAISDVPPLKALLGRVGCALGEPIDGNGK---------------ISAK--------------------------- 117 (340)
T ss_pred eEEeeeeeeccCchHHHhhhhhhhhcCeecCCCC---------------cccc---------------------------
Confidence 9999999999999999999999999999998531 1100
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCcccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALF 240 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~ 240 (516)
+| .+..|....+|++||+|++|+++
T Consensus 118 ----~~---------------------------------------------------~ii~r~Sv~epmqtg~KAvdslV 142 (340)
T KOG1353|consen 118 ----ER---------------------------------------------------RIIPRASVDEPMQTGLKAVDSLV 142 (340)
T ss_pred ----cc---------------------------------------------------ccccceeeechhhhhhhHhhcee
Confidence 01 13457789999999999999999
Q ss_pred ccccCCccccCCCCCCCchHhHH-Hhhhcc---C------CCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQ-ALSKYS---N------SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK 310 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~-~ia~~~---~------~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~ 310 (516)
|||||||.+|.|+..+|||.|.. .|.++. + .=+|||++||++...|..++..+ .+.+.|+
T Consensus 143 pigRgqrELiIgdRqTGkTsla~dTI~nqk~~N~~~~ekkKiyCvyvaigqkrStvaqlv~~l----------~~~~a~~ 212 (340)
T KOG1353|consen 143 PIGRGQRELIIGDRQTGKTSLAIDTILNQKRGNECLDEKKKIYCVYVAIGQKRSTVAQLVQRL----------EEADAME 212 (340)
T ss_pred eeccCceEEEeccccCCceeeeehhhhhhhhhcccccccceEEEEEEecccchhHHHHHHHHH----------HhcCCce
Confidence 99999999999999999999986 565543 1 23599999999999999999874 5678999
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHH
Q 010179 311 RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYE 390 (516)
Q Consensus 311 rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~E 390 (516)
+|++|++|++
T Consensus 213 y~ivv~atas---------------------------------------------------------------------- 222 (340)
T KOG1353|consen 213 YSIVVAATAS---------------------------------------------------------------------- 222 (340)
T ss_pred EEEEEEeecc----------------------------------------------------------------------
Confidence 9999999988
Q ss_pred hhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc
Q 010179 391 RAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ 470 (516)
Q Consensus 391 Rag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~ 470 (516)
.++|.+..+|.++.|| ||+|.|..+|..+|+.||||+..|+||+.+..
T Consensus 223 -------------------------q~gdvsayiptnvisi-dgqi~l~t~lfy~girpainvg~svsrvgsaa------ 270 (340)
T KOG1353|consen 223 -------------------------QAGDVSAYIPTNVISI-DGQIFLETELFYKGIRPAINVGLSVSRVGSAA------ 270 (340)
T ss_pred -------------------------cccceeeecccceeee-cchhHHHHHHHHhccchhheeeeEeeeccchH------
Confidence 4568888999999999 99999999999999999999999999988865
Q ss_pred CCHHHHHHHHHHHHHHHhhhhHHHHHHcCCCccccce
Q 010179 471 FDPDFINIRTKAREVLQREDDLNEIVQVGYLWSLSFH 507 (516)
Q Consensus 471 ~~~~~~~~~~~~r~~L~~y~e~~~li~~G~~~~~~~~ 507 (516)
......+.+..++-.|++|+|+..+.+.|.|.+.+-.
T Consensus 271 q~kamkqvag~~klelaq~revaafaqfgsdlda~tq 307 (340)
T KOG1353|consen 271 QTKAMKQVAGSLKLELAQYREVAAFAQFGSDLDAATQ 307 (340)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccHHHH
Confidence 3356778889999999999999999999999987654
No 63
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.12 E-value=2.3e-09 Score=96.59 Aligned_cols=158 Identities=32% Similarity=0.426 Sum_probs=118.9
Q ss_pred cccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~ 325 (516)
++|+|++|+|||+++..++.+. ....++|....+...++.+....+ ......++..++....+.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ 71 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGE----------SLKGALDNLIIVFATADDPAAA 71 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhh----------hhccccccEEEEEcCCCCCcHH
Confidence 5789999999999999988764 245578888888877776544321 1223345666666665555443
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCC
Q 010179 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTG 405 (516)
Q Consensus 326 r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~G 405 (516)
... .++.++.......++++|+++.+++...+. ..+++..+...+.+|++++.+ .
T Consensus 72 ~~~------~~~~~~~~~~~~~~lviDe~~~~~~~~~~~---------~~~~~~~~~~~l~~l~~~~~~----------~ 126 (165)
T cd01120 72 RLL------SKAERLRERGGDDLIILDELTRLVRALREI---------REGYPGELDEELRELLERARK----------G 126 (165)
T ss_pred HHH------HHHHHHHhCCCCEEEEEEcHHHHHHHHHHH---------HhcCChHHHHHHHHHHHHHhc----------C
Confidence 332 556777777888899999999999877653 346788888899999999863 5
Q ss_pred ceeEEEEEecCCCCCCch----hhHhhhccccEEEEeeH
Q 010179 406 SVTIVGAVSPPGGDFSDP----VTSATLSIVQVFWGLDK 440 (516)
Q Consensus 406 SIT~i~~v~~~~~D~~dp----v~~~~~~i~d~~ivLsr 440 (516)
.+|++.+.....++..++ ....+..+.|+.|.|+|
T Consensus 127 ~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 165 (165)
T cd01120 127 GVTVIFTLQVPSGDKGDPRLTRGAQNLEDIADTVIVLSR 165 (165)
T ss_pred CceEEEEEecCCccccCcccccCccceeeecceEEEEeC
Confidence 889999999999888887 77788888999999976
No 64
>PF02874 ATP-synt_ab_N: ATP synthase alpha/beta family, beta-barrel domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR004100 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the N-terminal domain, which forms a closed beta-barrel with Greek-key topology. ; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0046961 proton-transporting ATPase activity, rotational mechanism, 0015992 proton transport, 0046034 ATP metabolic process, 0016469 proton-transporting two-sector ATPase complex; PDB: 1W0K_A 1H8H_B 2WSS_A 1EFR_A 2JIZ_H 1E1Q_A 2V7Q_B 1E79_B 1E1R_C 2XND_C ....
Probab=98.87 E-value=1e-08 Score=82.61 Aligned_cols=63 Identities=33% Similarity=0.471 Sum_probs=56.0
Q ss_pred EEEEECceEEEEeCCC--CccccEEEEc--C--CceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcC
Q 010179 24 VRKVSGPVVIADGMNG--AAMYELVRVG--H--DNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTH 86 (516)
Q Consensus 24 V~~I~G~vv~a~Gl~~--~~iGE~v~I~--~--~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg 86 (516)
|++|.|+++++++.+. +.+++.+.++ + ..++|||++|++|.+.+|+|++++||++|++|++||
T Consensus 1 V~~v~G~vv~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~Vv~~~~~~v~~~~~~~t~Gl~~G~~V~~tG 69 (69)
T PF02874_consen 1 VTQVVGPVVEVEFGPGVLPGIGEAVEVELVDFGNGVLGEVVGLDEDEVRLQVFGSTDGLSRGTEVRFTG 69 (69)
T ss_dssp EEEEECTEEEEECSEEEEEETTTEEEEEEEEETTEEEEEEEEEETTEEEEEESSSGTTSBTTCEEEEEE
T ss_pred CccccceEEEEEcCCCCCCCccEEEEEecccceeeeeeeecccCccEEEEEEecCCCCCCCCCEEEcCc
Confidence 6889999999976655 6788888886 3 458999999999999999999999999999999986
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.36 E-value=9.8e-07 Score=93.21 Aligned_cols=103 Identities=17% Similarity=0.254 Sum_probs=79.4
Q ss_pred CcccccCCCccc-cccc-------cccccccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHH
Q 010179 218 PVSSKLAADTPL-LTGQ-------RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEV 289 (516)
Q Consensus 218 p~~~R~~~~epl-~TGi-------raID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~ 289 (516)
|...|++|..-= ..|+ +.|.-++--++=..+.++||||+|||||+.-||+..+..+.-+-++--.-.|++++
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i 92 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREI 92 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHH
Confidence 556677665421 2233 44444555555567889999999999999999999888877777777777788777
Q ss_pred HHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHH
Q 010179 290 LMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 364 (516)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~rei 364 (516)
+++ |+.++..|+.++|++|.++||-.++.+.
T Consensus 93 ~e~--------------------------------------------a~~~~~~gr~tiLflDEIHRfnK~QQD~ 123 (436)
T COG2256 93 IEE--------------------------------------------ARKNRLLGRRTILFLDEIHRFNKAQQDA 123 (436)
T ss_pred HHH--------------------------------------------HHHHHhcCCceEEEEehhhhcChhhhhh
Confidence 764 7778888999999999999999999983
No 66
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.12 E-value=2.8e-05 Score=75.52 Aligned_cols=179 Identities=20% Similarity=0.154 Sum_probs=92.2
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc-C-CCEEEEEeeCC-chhHHHHHHHhccccccCCCCC
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-N-SDTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDG 303 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~-~-~d~~V~~~iGe-R~~Ev~e~~~~~~~~~~~~~~~ 303 (516)
+.||+..+|.++. +.+|.-..|+|++|+|||+++.+++.+. . ..-++|.-..+ ....+.++.+.
T Consensus 1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~~~~~~~~~~~~~----------- 69 (218)
T cd01394 1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEGLSSERFRQIAGD----------- 69 (218)
T ss_pred CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHhH-----------
Confidence 4699999999996 6788889999999999999999888653 2 22344543221 12223333221
Q ss_pred CccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHH
Q 010179 304 REESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAA 383 (516)
Q Consensus 304 ~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s 383 (516)
.......+ +++....+. .+.. ..+...+.+.+.+ --++++||++.+.++..+-. + + ......
T Consensus 70 ~~~~~~~~-~~~~~~~~~--~~~~----~~~~~~~~~~~~~-~~lvvIDsi~~l~~~~~~~~------~--~--~~~~~~ 131 (218)
T cd01394 70 RPERAASS-IIVFEPMDF--NEQG----RAIQETETFADEK-VDLVVVDSATALYRLELGDD------D--T--TIKNYR 131 (218)
T ss_pred ChHhhhcC-EEEEeCCCH--HHHH----HHHHHHHHHHhcC-CcEEEEechHHhhhHHhcCc------c--c--hHHHHH
Confidence 01112233 444444332 2211 1122222333334 45889999998865543310 0 0 112222
Q ss_pred HHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCC---CCCchhhH-hhhccccEEEEeeHhh
Q 010179 384 RLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG---DFSDPVTS-ATLSIVQVFWGLDKKL 442 (516)
Q Consensus 384 ~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~---D~~dpv~~-~~~~i~d~~ivLsr~L 442 (516)
.+.+++.+...+. +.-.+|++.|..+..+ +...|..- ....+.|+-|.|++.-
T Consensus 132 ~l~~~~~~L~~~a------~~~~~~vi~t~q~~~~~~~~~~~p~~g~~~~~~~d~~i~l~~~~ 188 (218)
T cd01394 132 ELAKQLTFLLWLA------RKHDVAVVITNQVYSDVGSGSVRPLGGHTLEHWSKVILRLEKLR 188 (218)
T ss_pred HHHHHHHHHHHHH------HHhCCEEEEecCCEEcCCCCcccccCCcchhcceeEEEEEEEcC
Confidence 3333322111110 2245777777665421 11123211 2334568889998653
No 67
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.05 E-value=8.9e-06 Score=79.49 Aligned_cols=177 Identities=21% Similarity=0.167 Sum_probs=102.5
Q ss_pred ccccccccccc--ccccCCccccCCCCCCCchHhHHHhh-hcc-C-CCEEEEEeeCCchhHHHHHHHhccccccCCCCCC
Q 010179 230 LTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALS-KYS-N-SDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGR 304 (516)
Q Consensus 230 ~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia-~~~-~-~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~ 304 (516)
.|||..+|-++ -+-+|.-++|.|++|+|||+|+.+++ ++. + ..-++|+..-|..+++.+-.+.|.- ++
T Consensus 2 ~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~---d~---- 74 (226)
T PF06745_consen 2 PTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGW---DL---- 74 (226)
T ss_dssp --SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS----H----
T ss_pred CCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCC---cH----
Confidence 59999999999 67799999999999999999999866 343 3 4568999999999888888776411 01
Q ss_pred ccCCcc--eEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhH
Q 010179 305 EESVMK--RTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLA 382 (516)
Q Consensus 305 ~~~~~~--rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~ 382 (516)
+...+ +-.++-..+...-......-...-.+.+.+.+.+. -.+++||++-+ .+. .-|..+.
T Consensus 75 -~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~~~-~~vVIDsls~l-~~~--------------~~~~~~r 137 (226)
T PF06745_consen 75 -EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEELKP-DRVVIDSLSAL-LLY--------------DDPEELR 137 (226)
T ss_dssp -HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHHTS-SEEEEETHHHH-TTS--------------SSGGGHH
T ss_pred -HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhcCC-CEEEEECHHHH-hhc--------------CCHHHHH
Confidence 11111 23333222221000001112233455666666555 57889999954 111 1123444
Q ss_pred HHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhc-cccEEEEeeHh
Q 010179 383 ARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLS-IVQVFWGLDKK 441 (516)
Q Consensus 383 s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~-i~d~~ivLsr~ 441 (516)
..+..|+..+.. .| +|++.+...+.+...... ..... +.|+-|.|+..
T Consensus 138 ~~l~~l~~~l~~---------~~-~t~llt~~~~~~~~~~~~-~~i~~~l~D~vI~L~~~ 186 (226)
T PF06745_consen 138 RFLRALIKFLKS---------RG-VTTLLTSEMPSGSEDDGT-FGIEHYLADGVIELRYE 186 (226)
T ss_dssp HHHHHHHHHHHH---------TT-EEEEEEEEESSSSSSSSS-TSHHHHHSSEEEEEEEE
T ss_pred HHHHHHHHHHHH---------CC-CEEEEEEccccCcccccc-cchhhhcccEEEEEEEE
Confidence 556667776653 23 577777776543222111 12223 78999998864
No 68
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.89 E-value=0.00014 Score=73.00 Aligned_cols=186 Identities=22% Similarity=0.148 Sum_probs=111.1
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-cCC-CEEEEEeeCCchhHHHHHHHhccccccCCCC
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-SNS-DTVVYVGCGERGNEMAEVLMDFPQLTMTLPD 302 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~~~-d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~ 302 (516)
+.+.|||.-+|-++- +-+|..++|.|+||+|||+++.+.+.+ +.. .-++|+..-|...++.+-...|--.....
T Consensus 3 ~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~-- 80 (260)
T COG0467 3 ERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVY-- 80 (260)
T ss_pred ccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHH--
Confidence 456799999999999 789999999999999999999987654 333 45999999999999999887641110000
Q ss_pred CCccCCcceEEEEEeCCCCCHH---H--HHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCC
Q 010179 303 GREESVMKRTTLVANTSNMPVA---A--REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGY 377 (516)
Q Consensus 303 ~~~~~~~~rtvvv~~tsd~~~~---~--r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gy 377 (516)
. +--+-.++-..+...+.. . -.....+.-.+-+...+.+ ...+++||++.+...+..
T Consensus 81 -~--~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~~-~~~~ViDsi~~~~~~~~~-------------- 142 (260)
T COG0467 81 -I--EKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKEG-ADRVVIDSITELTLYLND-------------- 142 (260)
T ss_pred -h--hcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHhC-CCEEEEeCCchHhhhcCc--------------
Confidence 0 001122222222222211 0 1123445566667777777 566789999965544422
Q ss_pred cchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhh
Q 010179 378 PAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQ 444 (516)
Q Consensus 378 p~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~ 444 (516)
+......+..+..... +.+ +|++.+...+.+...+. .....+.||.|.|+....+
T Consensus 143 ~~~~r~~~~~l~~~~~---------~~~-~t~~~~~~~~~~~~~~~--~~~~~~vdgvI~l~~~~~~ 197 (260)
T COG0467 143 PALVRRILLLLKRFLK---------KLG-VTSLLTTEAPVEERGES--GVEEYIVDGVIRLDLKEIE 197 (260)
T ss_pred hHHHHHHHHHHHHHHH---------hCC-CEEEEEecccccCCCcc--ceEEEEEEEEEEEeeeccc
Confidence 1111122222222222 334 78777765443333321 1223378999999886665
No 69
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.88 E-value=0.00013 Score=80.18 Aligned_cols=178 Identities=13% Similarity=0.128 Sum_probs=105.5
Q ss_pred CCccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 010179 225 ADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (516)
Q Consensus 225 ~~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~ 300 (516)
..+.+.|||..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+. ...-++|...-+...++.+-.+.| ..++
T Consensus 251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~---g~~~ 327 (509)
T PRK09302 251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSW---GIDL 327 (509)
T ss_pred ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHc---CCCh
Confidence 45668999999999986 7799999999999999999999877542 344578887778877777665543 1111
Q ss_pred CCCCccCCcc--eEEEEEe-CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCC
Q 010179 301 PDGREESVMK--RTTLVAN-TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGY 377 (516)
Q Consensus 301 ~~~~~~~~~~--rtvvv~~-tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gy 377 (516)
. ...+ +..++.. +......+. ...+.+...+.+.+ ++++||+|-+..+..
T Consensus 328 ---~--~~~~~g~l~i~~~~~~~~~~~~~------~~~i~~~i~~~~~~-~vVIDslt~l~~~~~--------------- 380 (509)
T PRK09302 328 ---E--KMEEKGLLKIICARPESYGLEDH------LIIIKREIEEFKPS-RVAIDPLSALARGGS--------------- 380 (509)
T ss_pred ---H--HHhhcCCceeecCCcccCCHHHH------HHHHHHHHHHcCCC-EEEEcCHHHHHHhCC---------------
Confidence 0 1111 1122221 112222221 12333444444555 789999996653321
Q ss_pred cchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhH-hhhccccEEEEeeHhh
Q 010179 378 PAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTS-ATLSIVQVFWGLDKKL 442 (516)
Q Consensus 378 p~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~-~~~~i~d~~ivLsr~L 442 (516)
+..+...+..|...+.+ -.+|++.|..++...-.++.+. .+.++.|+-|.|+..-
T Consensus 381 ~~~~~~~l~~l~~~~k~----------~~~t~l~t~~~~~~~g~~~~~~~~~~~l~D~vI~L~~~~ 436 (509)
T PRK09302 381 LNEFRQFVIRLTDYLKS----------EEITGLFTNLTPDFMGSHSITESHISSLTDTWILLQYVE 436 (509)
T ss_pred HHHHHHHHHHHHHHHHh----------CCCeEEEEeccccccCCCCCCcCceEEeeeEEEEEEEee
Confidence 11223334445544442 2358888877665322233332 3456779999998643
No 70
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.85 E-value=3.6e-05 Score=66.03 Aligned_cols=96 Identities=20% Similarity=0.168 Sum_probs=56.3
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 322 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~ 322 (516)
+++.+.|+|++|+|||+++..++++..... .++....+...+....... ......+..
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 59 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL---------------------LIIVGGKKA 59 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH---------------------hhhhhccCC
Confidence 478899999999999999999998876542 2333333333332221100 000111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHH
Q 010179 323 VAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 364 (516)
Q Consensus 323 ~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~rei 364 (516)
...+.......++.|++.. ..++++|++.++.......
T Consensus 60 ~~~~~~~~~~~~~~~~~~~----~~viiiDei~~~~~~~~~~ 97 (148)
T smart00382 60 SGSGELRLRLALALARKLK----PDVLILDEITSLLDAEQEA 97 (148)
T ss_pred CCCHHHHHHHHHHHHHhcC----CCEEEEECCcccCCHHHHH
Confidence 2333444555555565443 5889999999776665554
No 71
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.80 E-value=0.00017 Score=70.98 Aligned_cols=67 Identities=19% Similarity=0.213 Sum_probs=54.4
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHhc
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
+.+.|||..+|-++. +-+|.-+.|.|++|+|||+|+.+++.+ . +...++|+..-+..+++.+-.+.|
T Consensus 5 ~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~ 75 (234)
T PRK06067 5 EIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESV 75 (234)
T ss_pred eEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHC
Confidence 458999999999985 668999999999999999999988643 2 345688888888887776665554
No 72
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.77 E-value=0.00017 Score=70.55 Aligned_cols=117 Identities=21% Similarity=0.286 Sum_probs=71.0
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--C------CCEEEEEeeCC--chhHHHHHHHhcccc
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGE--RGNEMAEVLMDFPQL 296 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~------~d~~V~~~iGe--R~~Ev~e~~~~~~~~ 296 (516)
+.||++.+|-++. +.+|....|.|++|+|||+|+.+++.+. . ...++|.-..+ +.+++.++.+.+.
T Consensus 1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~-- 78 (235)
T cd01123 1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFG-- 78 (235)
T ss_pred CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhc--
Confidence 4699999999987 7799999999999999999999887442 1 13456654444 2455555554421
Q ss_pred ccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH
Q 010179 297 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (516)
Q Consensus 297 ~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~ 359 (516)
. .....+++..++...+. +.... .-..+-+.+.+.++--++++||++.+.+
T Consensus 79 ---~---~~~~~~~~i~~~~~~~~----~~l~~--~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 79 ---L---DPEEVLDNIYVARAYNS----DHQLQ--LLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred ---c---ChHhHhcCEEEEecCCH----HHHHH--HHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 0 12345666555433221 11111 1112233444443556899999997654
No 73
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.76 E-value=0.00034 Score=70.61 Aligned_cols=57 Identities=23% Similarity=0.302 Sum_probs=43.9
Q ss_pred cccccccccccc----------------ccccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhH
Q 010179 229 LLTGQRVLDALF----------------PSVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNE 285 (516)
Q Consensus 229 l~TGiraID~l~----------------pigkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~E 285 (516)
+.|||+.+|.++ =+-+|.-..|.|+||+|||+++.+++.+ + ...-++|.-.-+..+.
T Consensus 4 ~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~ 78 (259)
T TIGR03878 4 VPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANF 78 (259)
T ss_pred ccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchH
Confidence 469999999997 3559999999999999999999987654 2 3335677666565543
No 74
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.67 E-value=0.00069 Score=67.21 Aligned_cols=65 Identities=20% Similarity=0.272 Sum_probs=53.8
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHhc
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
+.|||..+|-++. +-+|.-++|.|+||+|||+|+.+++.+ . ....++|+...|...++.+-.+.|
T Consensus 3 i~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~ 71 (237)
T TIGR03877 3 VKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQF 71 (237)
T ss_pred cccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHh
Confidence 6799999999875 669999999999999999999987643 2 455689999999888887766553
No 75
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=97.65 E-value=0.00016 Score=74.45 Aligned_cols=119 Identities=18% Similarity=0.259 Sum_probs=77.8
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCC--chhHHHHHHHhcc
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMDFP 294 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGe--R~~Ev~e~~~~~~ 294 (516)
..+.||++.+|.++. +-+|.-..|+|++|+|||+++.+++.+.. ...+||+-.-+ +.+.+.++.+.+.
T Consensus 75 ~~~~Tg~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~g 154 (310)
T TIGR02236 75 GKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARG 154 (310)
T ss_pred CeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcC
Confidence 347799999999987 66888999999999999999998875531 23678887777 5677777776531
Q ss_pred ccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcE-EEEEecchHHHH
Q 010179 295 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNV-SMMADSTSRWAE 359 (516)
Q Consensus 295 ~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~V-lll~Dsltr~a~ 359 (516)
+ .....+++..++...+.+ + .. ...-.+.+++.+.+.++ ++++||++-+-+
T Consensus 155 -----l---~~~~~~~~i~i~~~~~~~-~--~~---~lld~l~~~i~~~~~~~~lVVIDSisa~~r 206 (310)
T TIGR02236 155 -----L---DPDEVLKNIYVARAYNSN-H--QM---LLVEKAEDLIKELNNPVKLLIVDSLTSHFR 206 (310)
T ss_pred -----C---CHHHHhhceEEEecCCHH-H--HH---HHHHHHHHHHHhcCCCceEEEEecchHhhh
Confidence 1 111234554444333222 1 11 12234566666654334 899999996643
No 76
>PRK04328 hypothetical protein; Provisional
Probab=97.60 E-value=0.00093 Score=66.99 Aligned_cols=66 Identities=21% Similarity=0.250 Sum_probs=54.7
Q ss_pred cccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHhc
Q 010179 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 228 pl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
.+.|||.-+|-++. +-+|.-++|.|+||+|||+|+.+++.+ . ....++|+...|...++.+..+.|
T Consensus 4 rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 73 (249)
T PRK04328 4 RVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHPVQVRRNMRQF 73 (249)
T ss_pred eecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHc
Confidence 46899999999986 448999999999999999999986644 2 445689999999999888776654
No 77
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.59 E-value=0.0017 Score=63.31 Aligned_cols=55 Identities=33% Similarity=0.424 Sum_probs=42.8
Q ss_pred Ccccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhcc-C-CCEEEEEeeC
Q 010179 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-N-SDTVVYVGCG 280 (516)
Q Consensus 226 ~epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~-~-~d~~V~~~iG 280 (516)
++.+.||+..+|-++ -+-+|.-..|.|++|+|||+++.+++.+. . ..-++|.-.-
T Consensus 2 ~~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 2 DERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456899999999999 46678899999999999999999887543 2 2335565443
No 78
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.59 E-value=0.00017 Score=75.93 Aligned_cols=111 Identities=15% Similarity=0.204 Sum_probs=72.7
Q ss_pred ccccccCCCCcccccCCCccc-ccccccc-------ccccccccCCccccCCCCCCCchHhHHHhhhccCCC---EEEEE
Q 010179 209 QAWPVRTPRPVSSKLAADTPL-LTGQRVL-------DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD---TVVYV 277 (516)
Q Consensus 209 ~~wpv~~~~p~~~R~~~~epl-~TGiraI-------D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d---~~V~~ 277 (516)
++|-+ +-.|+.+|.+|.+-- ..|+.-+ -.++--++=-.+.++||||+|||+|+..|++.+..- .+-+.
T Consensus 119 ~R~~~-qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 119 IRQML-QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred HHHHh-ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 34443 234666777776521 2233211 122222333456799999999999999999886543 24455
Q ss_pred eeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHH-HHHHCCCcEEEEEecchH
Q 010179 278 GCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE-YFRDMGYNVSMMADSTSR 356 (516)
Q Consensus 278 ~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAE-yfrd~G~~Vlll~Dsltr 356 (516)
+.-....|++++++. |. ++..-+++.+|++|.++|
T Consensus 198 At~a~t~dvR~ife~--------------------------------------------aq~~~~l~krkTilFiDEiHR 233 (554)
T KOG2028|consen 198 ATNAKTNDVRDIFEQ--------------------------------------------AQNEKSLTKRKTILFIDEIHR 233 (554)
T ss_pred ccccchHHHHHHHHH--------------------------------------------HHHHHhhhcceeEEEeHHhhh
Confidence 667778888888764 11 222347889999999999
Q ss_pred HHHHHHHH
Q 010179 357 WAEALREI 364 (516)
Q Consensus 357 ~a~A~rei 364 (516)
|-.+|..+
T Consensus 234 FNksQQD~ 241 (554)
T KOG2028|consen 234 FNKSQQDT 241 (554)
T ss_pred hhhhhhhc
Confidence 99999885
No 79
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.57 E-value=0.00041 Score=67.41 Aligned_cols=40 Identities=35% Similarity=0.489 Sum_probs=36.2
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.||+..+|-++- +-+|+-..|.|++|+|||+|+.+++.+
T Consensus 1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~ 42 (226)
T cd01393 1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVE 42 (226)
T ss_pred CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHH
Confidence 4699999999984 789999999999999999999998765
No 80
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=97.55 E-value=0.00019 Score=78.15 Aligned_cols=182 Identities=7% Similarity=-0.181 Sum_probs=158.9
Q ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCc
Q 010179 316 ANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKV 395 (516)
Q Consensus 316 ~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~ 395 (516)
.....++..++++|-++.+.+++++++.++|+=+.++.+.+++.+++|...-+...+.+..++...-+.|++.+++-..=
T Consensus 288 T~liaNTSnMPVAAREasIYtGiTiaEY~RDmGy~v~lmADSTSRWAEAlREisgRleEmPgeegyPaYL~srlA~fYER 367 (588)
T COG1155 288 TVLIANTSNMPVAAREASIYTGITIAEYYRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLGSRLAEFYER 367 (588)
T ss_pred eeEeecCccchHHHhhhhhhhhhhHHHHHHhhhhhhHHhhchHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHh
Confidence 45567888999999999999999999999999999999999999999999999999999999999999999999988853
Q ss_pred ccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc-CCHH
Q 010179 396 KCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPD 474 (516)
Q Consensus 396 ~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~ 474 (516)
...--..+++++|...||.-+.++...++.+.+-+.+=.+|.+.-.|+.+.+++-..|..+.+-.-++..+|+.. ++++
T Consensus 368 aG~v~~~~~~~r~GsvtV~gaVSPpGGdfSEPVtq~Tlriv~vFw~Ld~~la~~rhfPaInwl~syS~Y~~~~~~~~~~~ 447 (588)
T COG1155 368 AGRVRLVSPEERFGSITVIGAVSPPGGDFSEPVTQNTLRVVRVFWALDAALANRRHFPSINWLNSYSLYTEDLRSWYDEN 447 (588)
T ss_pred cCeeeecCCCcceEEEEEecCCCCCCCCcCcccchheeeeeeeecccchhhhhcccCcccChHHHHHHHHHHHHHHhhcc
Confidence 221112356788999999999999999999999999999999999999999999999999999998888777755 4556
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHH
Q 010179 475 FINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 475 ~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
+.....++|..+.+.-+.++-++
T Consensus 448 v~~~~~~~r~~a~~~Lq~e~elq 470 (588)
T COG1155 448 VSPEWGALRDQAMEILQRESELQ 470 (588)
T ss_pred cCchHHHHHHHHHHHHHHHHHHH
Confidence 66667888888888877777665
No 81
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.55 E-value=0.00062 Score=74.72 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=113.6
Q ss_pred CCCccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccC
Q 010179 224 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMT 299 (516)
Q Consensus 224 ~~~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~ 299 (516)
...+.+.|||..+|.++- +-+|.-++|.|+||+|||+|+.+++.+. +..-++|+.--|...++.+-.+.| ..+
T Consensus 240 ~~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~l---g~~ 316 (484)
T TIGR02655 240 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSW---GID 316 (484)
T ss_pred ccccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHc---CCC
Confidence 455679999999999885 6799999999999999999999887653 345689999999888887766653 111
Q ss_pred CCCCCccCCcce-EE-EEEe-CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCC
Q 010179 300 LPDGREESVMKR-TT-LVAN-TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSG 376 (516)
Q Consensus 300 ~~~~~~~~~~~r-tv-vv~~-tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~g 376 (516)
+ +...++ .+ ++.. +....+.. .+-.+-+...+.+.+ ++++||++-+..+..+
T Consensus 317 ~-----~~~~~~g~l~~~~~~p~~~~~~~------~~~~i~~~i~~~~~~-~vvIDsi~~~~~~~~~------------- 371 (484)
T TIGR02655 317 F-----EEMEQQGLLKIICAYPESAGLED------HLQIIKSEIADFKPA-RIAIDSLSALARGVSN------------- 371 (484)
T ss_pred h-----HHHhhCCcEEEEEcccccCChHH------HHHHHHHHHHHcCCC-EEEEcCHHHHHHhcCH-------------
Confidence 1 111111 23 3321 22222221 222233333444555 6789999976554311
Q ss_pred CcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCC--CCCCchhhH-hhhccccEEEEeeHhhhhcCCCCCCcc
Q 010179 377 YPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPG--GDFSDPVTS-ATLSIVQVFWGLDKKLAQRKHFPSVNW 453 (516)
Q Consensus 377 yp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~--~D~~dpv~~-~~~~i~d~~ivLsr~La~~g~yPAId~ 453 (516)
......+.+|.+-+. .-.||.+.|..+++ ++ .+++. .+-++.|+-|.|...-.+....-+|-+
T Consensus 372 --~~~r~~~~~l~~~lk----------~~~it~~~t~~~~~~~~~--~~~~~~~~s~l~D~ii~l~~~e~~g~~~r~i~V 437 (484)
T TIGR02655 372 --NAFRQFVIGVTGYAK----------QEEITGFFTNTSDQFMGS--HSITDSHISTITDTILMLQYVEIRGEMSRAINV 437 (484)
T ss_pred --HHHHHHHHHHHHHHh----------hCCCeEEEeecccccccC--CccCCCCeeEeeeEEEEEEEEecCCEEEEEEEE
Confidence 011222334444333 23578888877664 32 23332 334567999988755444444445555
Q ss_pred ccc
Q 010179 454 LIS 456 (516)
Q Consensus 454 l~S 456 (516)
+++
T Consensus 438 ~K~ 440 (484)
T TIGR02655 438 FKM 440 (484)
T ss_pred EEc
Confidence 554
No 82
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.53 E-value=0.00081 Score=65.75 Aligned_cols=64 Identities=28% Similarity=0.340 Sum_probs=49.5
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHh
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMD 292 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~ 292 (516)
+.|||..+|-++. +-+|..++|.|++|+|||+|+.+++.+ . ...-++|....+..+++.+..+.
T Consensus 2 i~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~ 69 (229)
T TIGR03881 2 LSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQ 69 (229)
T ss_pred cCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHH
Confidence 5699999999985 669999999999999999999987643 2 23456777777777766555443
No 83
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.53 E-value=0.00013 Score=72.60 Aligned_cols=67 Identities=21% Similarity=0.296 Sum_probs=43.6
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEEee-CCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGC-GERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 326 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~i-GeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r 326 (516)
+.++||||+|||||+.-||+..+..+.++.+. =++..++...+
T Consensus 53 ~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il------------------------------------ 96 (233)
T PF05496_consen 53 MLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAIL------------------------------------ 96 (233)
T ss_dssp EEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHH------------------------------------
T ss_pred EEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHH------------------------------------
Confidence 67999999999999999999988776554442 23333443332
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHH
Q 010179 327 EASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 364 (516)
Q Consensus 327 ~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~rei 364 (516)
...+.+-+|++|.++||..++.|+
T Consensus 97 --------------~~l~~~~ILFIDEIHRlnk~~qe~ 120 (233)
T PF05496_consen 97 --------------TNLKEGDILFIDEIHRLNKAQQEI 120 (233)
T ss_dssp --------------HT--TT-EEEECTCCC--HHHHHH
T ss_pred --------------HhcCCCcEEEEechhhccHHHHHH
Confidence 222345578899999999999995
No 84
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.41 E-value=0.0022 Score=61.66 Aligned_cols=102 Identities=18% Similarity=0.191 Sum_probs=58.9
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCC-chhHHHHHHHhccccccCCCCCCccCCcceEEEEEeC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT 318 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGe-R~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~t 318 (516)
+-+|+-..|.|++|+|||+++.+++.+. ...-++|.-.-+ ....+.+..+.++ +..+++-+ ++..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~-----------~~~~~~i~-~~~~ 76 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRP-----------ERALSNFI-VFEV 76 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCh-----------HHHhcCEE-EEEC
Confidence 3478889999999999999999887543 234467776654 5666666554321 11234433 3333
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHH
Q 010179 319 SNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL 361 (516)
Q Consensus 319 sd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~ 361 (516)
.+ +.+... ....+.+.+.+.+.+ ++++||++.+.++.
T Consensus 77 ~~--~~~~~~---~~~~l~~~~~~~~~~-lvVIDSis~l~~~~ 113 (209)
T TIGR02237 77 FD--FDEQGV---AIQKTSKFIDRDSAS-LVVVDSFTALYRLE 113 (209)
T ss_pred CC--HHHHHH---HHHHHHHHHhhcCcc-EEEEeCcHHHhHHH
Confidence 22 222211 122234444444333 78889999876543
No 85
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.40 E-value=0.00077 Score=70.15 Aligned_cols=119 Identities=19% Similarity=0.255 Sum_probs=74.6
Q ss_pred Cccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--------CCCEEEEEeeCC--chhHHHHHHHhc
Q 010179 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDF 293 (516)
Q Consensus 226 ~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--------~~d~~V~~~iGe--R~~Ev~e~~~~~ 293 (516)
...+.||++.+|.++- +-+|.-..|+|++|+|||+|+.+++-+. ....++|.-.-+ +.+.+.++.+.|
T Consensus 75 ~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 75 VLKITTGSQALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CceeCCCCHHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 4568899999999976 6688899999999999999999877322 124567776655 467777777664
Q ss_pred cccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH
Q 010179 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (516)
Q Consensus 294 ~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~ 359 (516)
. + ..+..+++ +.++...+ ...... ....+.+.+.+.+ --|+++||++-+-+
T Consensus 155 g-----~---d~~~~l~~-i~~~~~~~--~e~~~~---~l~~l~~~i~~~~-~~LvVIDSisal~r 205 (313)
T TIGR02238 155 G-----V---DPDAVLDN-ILYARAYT--SEHQME---LLDYLAAKFSEEP-FRLLIVDSIMALFR 205 (313)
T ss_pred C-----C---ChHHhcCc-EEEecCCC--HHHHHH---HHHHHHHHhhccC-CCEEEEEcchHhhh
Confidence 1 1 12334556 33322211 222221 1123344444443 33799999996544
No 86
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=97.37 E-value=0.0008 Score=70.94 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=76.8
Q ss_pred CCccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCC--chhHHHHHHHh
Q 010179 225 ADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMD 292 (516)
Q Consensus 225 ~~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGe--R~~Ev~e~~~~ 292 (516)
....+.||++.+|-++- +-+|.-.-|+|++|+|||+|+.+++-+.. ...++|.-.-+ +++.+.+..+.
T Consensus 104 ~~~~isTG~~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~ 183 (344)
T PLN03187 104 SVVRITTGSQALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAER 183 (344)
T ss_pred cCceecCCcHhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 34568999999999987 55888888999999999999998863321 23577777766 68888887776
Q ss_pred ccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHH
Q 010179 293 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 360 (516)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A 360 (516)
|- + .....+++ +.++ ... ...+..... ..+.+.+.+.+ --||++||++-+-++
T Consensus 184 ~g-----~---d~~~~l~~-I~~~-~~~-~~e~~~~~l---~~l~~~i~~~~-~~LvVIDSital~r~ 236 (344)
T PLN03187 184 FG-----M---DADAVLDN-IIYA-RAY-TYEHQYNLL---LGLAAKMAEEP-FRLLIVDSVIALFRV 236 (344)
T ss_pred cC-----C---ChhhhcCe-EEEe-cCC-CHHHHHHHH---HHHHHHHHhcC-CCEEEEeCcHHhhhc
Confidence 41 1 12344566 3222 222 222222211 22334444433 337899999966443
No 87
>PRK09354 recA recombinase A; Provisional
Probab=97.35 E-value=0.00098 Score=70.35 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=75.7
Q ss_pred Cccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 010179 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (516)
Q Consensus 226 ~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~ 300 (516)
.+.+.||+..+|.++. +-+|.-..|+|++|+|||+|+.+++.+. ....++|.-.-+.... ++.+.+
T Consensus 38 ~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~--~~a~~l------- 108 (349)
T PRK09354 38 VEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYAKKL------- 108 (349)
T ss_pred CceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH--HHHHHc-------
Confidence 4468999999999998 4467788899999999999999866442 3345677665443332 344432
Q ss_pred CCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcC
Q 010179 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLA 369 (516)
Q Consensus 301 ~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~g 369 (516)
+-+ +++- ++ ++.+. .+ .++.+++.+...+.--++++||++-+.. ..|+...+|
T Consensus 109 ----Gvd-ld~l-li-~qp~~--~E------q~l~i~~~li~s~~~~lIVIDSvaaL~~-~~E~eg~~g 161 (349)
T PRK09354 109 ----GVD-IDNL-LV-SQPDT--GE------QALEIADTLVRSGAVDLIVVDSVAALVP-KAEIEGEMG 161 (349)
T ss_pred ----CCC-HHHe-EE-ecCCC--HH------HHHHHHHHHhhcCCCCEEEEeChhhhcc-hhhhcCCcc
Confidence 111 2342 23 33331 22 3456677777777777999999996653 224443333
No 88
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.29 E-value=0.0015 Score=71.98 Aligned_cols=67 Identities=21% Similarity=0.283 Sum_probs=57.0
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-C-CCEEEEEeeCCchhHHHHHHHhc
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-N-SDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~-~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
+.+.|||..+|-++- +-+|.-++|.|+||+|||+|+.+++.+ . + ..-++|+..-|..+++.+-...|
T Consensus 11 ~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~ 82 (509)
T PRK09302 11 EKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASF 82 (509)
T ss_pred ccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHc
Confidence 457899999999974 779999999999999999999987754 3 2 35689999999999998887765
No 89
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.26 E-value=0.0056 Score=59.78 Aligned_cols=62 Identities=23% Similarity=0.301 Sum_probs=49.3
Q ss_pred cccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHhc
Q 010179 232 GQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 232 GiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
||+.+|-++. +-+|.-+.|.|++|+|||+++.+++.+ . +..-++|.-.-+..+++.+-.+.|
T Consensus 1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~ 66 (224)
T TIGR03880 1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSK 66 (224)
T ss_pred CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHc
Confidence 6778888774 448999999999999999999987754 2 334588888999888888877664
No 90
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.25 E-value=0.0026 Score=69.51 Aligned_cols=61 Identities=23% Similarity=0.263 Sum_probs=46.8
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc-CC-CEEEEEeeCCchhHHH
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCGERGNEMA 287 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~-~~-d~~V~~~iGeR~~Ev~ 287 (516)
+.+.||+.-+|-++. +.+|+-++|.|+||+|||||+.+++.+. .. .-++|+---|..+.+.
T Consensus 74 ~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~ 138 (454)
T TIGR00416 74 PRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIK 138 (454)
T ss_pred CccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHH
Confidence 468999999999984 8899999999999999999999887653 22 2356665444544443
No 91
>PTZ00035 Rad51 protein; Provisional
Probab=97.23 E-value=0.0011 Score=69.59 Aligned_cols=121 Identities=20% Similarity=0.254 Sum_probs=72.8
Q ss_pred CCCccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCC--chhHHHHHHH
Q 010179 224 AADTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLM 291 (516)
Q Consensus 224 ~~~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGe--R~~Ev~e~~~ 291 (516)
.....+.||++.+|.++- +-+|.-..|+|++|+|||+|+.+++.+.. ...++|.-.-+ +.+.+.++.+
T Consensus 95 ~~~~~isTG~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~ 174 (337)
T PTZ00035 95 KNIIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAE 174 (337)
T ss_pred ccCccccCCcHHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHH
Confidence 344568999999999985 66788999999999999999998874322 23455554333 3566777666
Q ss_pred hccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH
Q 010179 292 DFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~ 359 (516)
.+. + ....++++- .++...+ ..+..... ..+.+.+.+ ++--||++||++-+-+
T Consensus 175 ~~g-----~---~~~~~l~nI-~~~~~~~--~e~~~~~l---~~~~~~l~~-~~~~lvVIDSital~r 227 (337)
T PTZ00035 175 RFG-----L---DPEDVLDNI-AYARAYN--HEHQMQLL---SQAAAKMAE-ERFALLIVDSATALFR 227 (337)
T ss_pred HhC-----C---ChHhHhhce-EEEccCC--HHHHHHHH---HHHHHHhhc-cCccEEEEECcHHhhh
Confidence 531 1 122445663 2322221 22222111 123333333 4445899999996544
No 92
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.21 E-value=0.00083 Score=70.17 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=69.4
Q ss_pred ccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCCC
Q 010179 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLP 301 (516)
Q Consensus 227 epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~ 301 (516)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||+|+.+++.+. ....++|.-.-+.... ++.+.+
T Consensus 34 ~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~--~~a~~l-------- 103 (321)
T TIGR02012 34 ETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP--VYARKL-------- 103 (321)
T ss_pred ceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHH--HHHHHc--------
Confidence 458899999999998 5688899999999999999988766442 2334566644332222 233321
Q ss_pred CCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH
Q 010179 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (516)
Q Consensus 302 ~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~ 359 (516)
+-+ +++-+ ++ ..+. .+ .++.+++.+..++.--++++||++-+..
T Consensus 104 ---Gvd-~~~l~-v~-~p~~--~e------q~l~~~~~li~~~~~~lIVIDSv~al~~ 147 (321)
T TIGR02012 104 ---GVD-IDNLL-VS-QPDT--GE------QALEIAETLVRSGAVDIIVVDSVAALVP 147 (321)
T ss_pred ---CCC-HHHeE-Ee-cCCC--HH------HHHHHHHHHhhccCCcEEEEcchhhhcc
Confidence 111 23332 32 2221 22 2456667776667777899999996654
No 93
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.16 E-value=0.0062 Score=60.45 Aligned_cols=63 Identities=22% Similarity=0.300 Sum_probs=43.5
Q ss_pred ccccccccccc--cccCCccccCCCCCCCchHhHHHhh-hccCC-CEEEEEeeCCchhHHHHHHHhc
Q 010179 231 TGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALS-KYSNS-DTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 231 TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia-~~~~~-d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
+++.-+|-++. +-+|..++|.|++|+|||+|+.+++ +.... .-++|....+...+..+..+.|
T Consensus 8 ~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~ 74 (230)
T PRK08533 8 LSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSL 74 (230)
T ss_pred EEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHh
Confidence 44444554443 5679999999999999999976544 33223 3478888888887777666543
No 94
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.11 E-value=0.0065 Score=56.84 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=35.5
Q ss_pred cccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
+.|.|+||+|||+|+.+++.+. ...-++|...-|..+++.+..+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHc
Confidence 4688999999999999887653 233477888888888888776653
No 95
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=97.10 E-value=0.0027 Score=65.83 Aligned_cols=119 Identities=20% Similarity=0.292 Sum_probs=75.3
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCC--chhHHHHHHHhcc
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMDFP 294 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGe--R~~Ev~e~~~~~~ 294 (516)
..+.||+..+|-++. +-+|.-..|+|++|+|||+++.+++-+.. ...++|+-.-+ +...+.+..+.+.
T Consensus 82 ~~~~Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g 161 (317)
T PRK04301 82 GKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALG 161 (317)
T ss_pred CccCCCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcC
Confidence 457899999999876 77899999999999999999999875421 23578887777 5677777766531
Q ss_pred ccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcE-EEEEecchHHHHH
Q 010179 295 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNV-SMMADSTSRWAEA 360 (516)
Q Consensus 295 ~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~V-lll~Dsltr~a~A 360 (516)
. ..+..+++-.++-.. +..++.. ..-.+.+.+.+ +.++ +|++||++-+-++
T Consensus 162 -----~---~~~~~l~~i~~~~~~---~~~~~~~---~~~~l~~~i~~-~~~~~lvVIDSisa~~~~ 213 (317)
T PRK04301 162 -----L---DPDEVLDNIHVARAY---NSDHQML---LAEKAEELIKE-GENIKLVIVDSLTAHFRA 213 (317)
T ss_pred -----C---ChHhhhccEEEEeCC---CHHHHHH---HHHHHHHHHhc-cCceeEEEEECchHHhhh
Confidence 1 122345663333221 1222211 11233333333 3444 8999999966443
No 96
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.09 E-value=0.0021 Score=69.01 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=50.3
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHH
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~ 325 (516)
..+.|+|++|+|||+|+..|++..+.+...+........++.++++.
T Consensus 37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~--------------------------------- 83 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEE--------------------------------- 83 (413)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHH---------------------------------
Confidence 35789999999999999999998777665554444333344443332
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHH
Q 010179 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALRE 363 (516)
Q Consensus 326 r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~re 363 (516)
+......|+..+|++|++.++..++.+
T Consensus 84 -----------~~~~~~~g~~~vL~IDEi~~l~~~~q~ 110 (413)
T PRK13342 84 -----------ARQRRSAGRRTILFIDEIHRFNKAQQD 110 (413)
T ss_pred -----------HHHhhhcCCceEEEEechhhhCHHHHH
Confidence 111122577889999999988766554
No 97
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.06 E-value=0.0086 Score=63.85 Aligned_cols=62 Identities=24% Similarity=0.333 Sum_probs=46.5
Q ss_pred Cccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccCC--CEEEEEeeCCchhHHH
Q 010179 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGERGNEMA 287 (516)
Q Consensus 226 ~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~--d~~V~~~iGeR~~Ev~ 287 (516)
.+.+.||+.-+|-++- +.+|.-++|.|++|+|||+|+.+++.+... .-++|.---|..+.+.
T Consensus 61 ~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~ 126 (372)
T cd01121 61 EERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIK 126 (372)
T ss_pred cCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHH
Confidence 3468999999999985 889999999999999999999998865322 2355554334444443
No 98
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.03 E-value=0.0011 Score=69.33 Aligned_cols=110 Identities=16% Similarity=0.154 Sum_probs=71.4
Q ss_pred Cccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 010179 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (516)
Q Consensus 226 ~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~ 300 (516)
.+.+.||+..+|.++. +-+|.-+-|+|++|+|||+|+.+++.+. ....++|.-.-+. -+. ++.+.+
T Consensus 33 ~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~-~~~-~~a~~l------- 103 (325)
T cd00983 33 VEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA-LDP-VYAKKL------- 103 (325)
T ss_pred CceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc-HHH-HHHHHc-------
Confidence 3468999999999998 5578888899999999999999876442 2344666654332 222 334332
Q ss_pred CCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH
Q 010179 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (516)
Q Consensus 301 ~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~ 359 (516)
+-+ +++ ++++ ..+. . ..++.+++.+...+.-.++++||++-+..
T Consensus 104 ----Gvd-~~~-l~v~-~p~~--~------eq~l~i~~~li~s~~~~lIVIDSvaal~~ 147 (325)
T cd00983 104 ----GVD-LDN-LLIS-QPDT--G------EQALEIADSLVRSGAVDLIVVDSVAALVP 147 (325)
T ss_pred ----CCC-HHH-heec-CCCC--H------HHHHHHHHHHHhccCCCEEEEcchHhhcc
Confidence 111 233 2333 3221 1 23456677777777778999999996663
No 99
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.97 E-value=0.003 Score=69.37 Aligned_cols=66 Identities=20% Similarity=0.247 Sum_probs=55.4
Q ss_pred cccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc-c-C-CCEEEEEeeCCchhHHHHHHHhc
Q 010179 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY-S-N-SDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 228 pl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~-~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
.+.|||.-+|-++. +-+|...+|.|+||+|||+|+.+++-+ + + ..-++|+...|..+++.+-.+.|
T Consensus 2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~ 72 (484)
T TIGR02655 2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSF 72 (484)
T ss_pred cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHc
Confidence 36799999999987 779999999999999999999987543 2 2 35688888899999998877764
No 100
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.96 E-value=0.0075 Score=52.66 Aligned_cols=108 Identities=17% Similarity=0.328 Sum_probs=63.4
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~ 327 (516)
++|.|++|+|||+++..+|++.+..+ +..-+++ +... ....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~-~~i~~~~-------~~~~-----------------------------~~~~-- 41 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPF-IEIDGSE-------LISS-----------------------------YAGD-- 41 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEE-EEEETTH-------HHTS-----------------------------STTH--
T ss_pred CEEECcCCCCeeHHHHHHHhhccccc-ccccccc-------cccc-----------------------------cccc--
Confidence 46899999999999999999875432 3332222 1100 0000
Q ss_pred HHHHHHHHHHHHHH---HCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCC
Q 010179 328 ASIYTGITIAEYFR---DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERT 404 (516)
Q Consensus 328 ~a~~~a~tiAEyfr---d~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~ 404 (516)
.--.+...|. +.++..+|++|++-.+.... .+....+...+...|.+++++... ..
T Consensus 42 ----~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~---------~~~~~~~~~~~~~~L~~~l~~~~~--------~~ 100 (132)
T PF00004_consen 42 ----SEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS---------QPSSSSFEQRLLNQLLSLLDNPSS--------KN 100 (132)
T ss_dssp ----HHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC---------STSSSHHHHHHHHHHHHHHHTTTT--------TS
T ss_pred ----cccccccccccccccccceeeeeccchhccccc---------ccccccccccccceeeeccccccc--------cc
Confidence 0111122222 33357999999998666554 223334444666667777776653 34
Q ss_pred CceeEEEEEec
Q 010179 405 GSVTIVGAVSP 415 (516)
Q Consensus 405 GSIT~i~~v~~ 415 (516)
+.++.|.+...
T Consensus 101 ~~~~vI~ttn~ 111 (132)
T PF00004_consen 101 SRVIVIATTNS 111 (132)
T ss_dssp SSEEEEEEESS
T ss_pred ccceeEEeeCC
Confidence 67888888655
No 101
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.95 E-value=0.012 Score=64.14 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=48.8
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHH
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
+.+.||+.-+|-++. +-+|.-+.|.|++|+|||+|+.+++.+. ...-++|+---|..+.+..-.+
T Consensus 60 ~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~ 128 (446)
T PRK11823 60 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAE 128 (446)
T ss_pred CcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHH
Confidence 468999999999985 7789999999999999999999987653 2234666655455555544333
No 102
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.92 E-value=0.0037 Score=65.89 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=74.9
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCC--chhHHHHHHHhcc
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMDFP 294 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGe--R~~Ev~e~~~~~~ 294 (516)
..+.||++.+|.++. +-+|.-..|+|++|+|||+|+.+++.+.. ...++|.-.-+ +.+.+.++.+.|.
T Consensus 103 ~~i~tG~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~ 182 (342)
T PLN03186 103 IQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFG 182 (342)
T ss_pred ceeCCCCHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcC
Confidence 458999999999876 56788888999999999999998874421 22577776666 5777777776641
Q ss_pred ccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHH
Q 010179 295 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 360 (516)
Q Consensus 295 ~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A 360 (516)
+ .....+++-.+ +...+ ..+..... ..+++.+.+ +.=-||++||++-+-+.
T Consensus 183 -----~---~~~~~l~~i~~-~~~~~--~e~~~~ll---~~~~~~~~~-~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 183 -----L---NGADVLENVAY-ARAYN--TDHQSELL---LEAASMMAE-TRFALMIVDSATALYRT 233 (342)
T ss_pred -----C---ChhhhccceEE-EecCC--HHHHHHHH---HHHHHHhhc-cCCCEEEEeCcHHHHHH
Confidence 1 12345566333 33222 22222221 122333433 33448899999976543
No 103
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.81 E-value=0.0047 Score=64.33 Aligned_cols=118 Identities=19% Similarity=0.282 Sum_probs=70.2
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCC--chhHHHHHHHhcc
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGE--RGNEMAEVLMDFP 294 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGe--R~~Ev~e~~~~~~ 294 (516)
..+.||++.+|.++. +-+|.-+.|.|++|+|||+|+.+++.++. ...++|.-.-+ +...+.+..+.+.
T Consensus 76 ~~~~tg~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~ 155 (316)
T TIGR02239 76 IQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYG 155 (316)
T ss_pred ceeCCCCHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcC
Confidence 458899999999876 55788899999999999999998875321 12456655444 3555666655531
Q ss_pred ccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH
Q 010179 295 QLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE 359 (516)
Q Consensus 295 ~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~ 359 (516)
+ ....++++-.+.-.. + +.+..... -.+.+.+.+ +.--||++||++-+-+
T Consensus 156 -----~---~~~~~l~~i~~~~~~-~--~~~~~~~l---~~~~~~~~~-~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 156 -----L---NPEDVLDNVAYARAY-N--TDHQLQLL---QQAAAMMSE-SRFALLIVDSATALYR 205 (316)
T ss_pred -----C---ChHHhhccEEEEecC-C--hHHHHHHH---HHHHHhhcc-CCccEEEEECcHHHhh
Confidence 1 122445553333222 1 22222211 122333433 3334889999996643
No 104
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.54 E-value=0.0088 Score=60.44 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=72.6
Q ss_pred Cccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--------CCCEEEEEeeCC--chhHHHHHHHhc
Q 010179 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDF 293 (516)
Q Consensus 226 ~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--------~~d~~V~~~iGe--R~~Ev~e~~~~~ 293 (516)
...+-||++.||.++- +-.|+=.=|+|++|+|||.|+.+++-++ ....+||.-..- +.+.+.++.+.+
T Consensus 17 ~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~ 96 (256)
T PF08423_consen 17 WSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERF 96 (256)
T ss_dssp S-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHT
T ss_pred CCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcc
Confidence 3558899999999983 6677778899999999999999887442 123466664433 455566666553
Q ss_pred cccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHH
Q 010179 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEAL 361 (516)
Q Consensus 294 ~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~ 361 (516)
.+ ..+.+++|..++-.. + ..+...... .+...+.+. +==||++||++.+-+..
T Consensus 97 -----~~---~~~~~l~~I~v~~~~-~--~~~l~~~L~---~l~~~l~~~-~ikLIVIDSIaalfr~e 149 (256)
T PF08423_consen 97 -----GL---DPEEILDNIFVIRVF-D--LEELLELLE---QLPKLLSES-KIKLIVIDSIAALFRSE 149 (256)
T ss_dssp -----TS----HHHHHHTEEEEE-S-S--HHHHHHHHH---HHHHHHHHS-CEEEEEEETSSHHHHHH
T ss_pred -----cc---ccchhhhceeeeecC-C--HHHHHHHHH---HHHhhcccc-ceEEEEecchHHHHHHH
Confidence 11 234567776554433 2 222222221 233445443 34489999999876653
No 105
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.48 E-value=0.022 Score=49.29 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=22.8
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.-+.|.|++|+|||+|+..++++.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999999875
No 106
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.45 E-value=0.022 Score=57.07 Aligned_cols=66 Identities=18% Similarity=0.093 Sum_probs=50.7
Q ss_pred Cccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhcc--C-CCEEEEEeeCCchhHHHHHHH
Q 010179 226 DTPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 226 ~epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~-~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
++-+.||+..+|-++- +.+|.-+.|.|++|+|||+++.+++.+. . ..-++|.-.-+...++.+.+.
T Consensus 10 ~~~~~tg~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~~~~~~r~~ 79 (271)
T cd01122 10 NEEVWWPFPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVRTARRLL 79 (271)
T ss_pred ccCCCCCcceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCHHHHHHHHH
Confidence 4467899999999853 6689999999999999999999887653 2 334666667677777776553
No 107
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.43 E-value=0.0073 Score=69.80 Aligned_cols=108 Identities=16% Similarity=0.191 Sum_probs=69.4
Q ss_pred ccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHhccccccCCC
Q 010179 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLP 301 (516)
Q Consensus 227 epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~ 301 (516)
..+.||+..+|.++. +-+|.-..|+|++|+|||+|+.+++.+ + ....++|.---+..+ .+..+.+
T Consensus 39 ~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~--~~~A~~l-------- 108 (790)
T PRK09519 39 SVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALD--PDYAKKL-------- 108 (790)
T ss_pred ceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchh--HHHHHHc--------
Confidence 467899999999997 568999999999999999999875543 2 334466665555444 1233332
Q ss_pred CCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHH
Q 010179 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (516)
Q Consensus 302 ~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a 358 (516)
+-+ +++. +++ ..+ +.++ ++.+++.+-.++.--||++||++-+.
T Consensus 109 ---GvD-l~~l-lv~-~~~--~~E~------~l~~i~~lv~~~~~~LVVIDSI~aL~ 151 (790)
T PRK09519 109 ---GVD-TDSL-LVS-QPD--TGEQ------ALEIADMLIRSGALDIVVIDSVAALV 151 (790)
T ss_pred ---CCC-hhHe-EEe-cCC--CHHH------HHHHHHHHhhcCCCeEEEEcchhhhc
Confidence 111 2232 233 222 1222 45556666666777789999998665
No 108
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=96.06 E-value=0.01 Score=68.43 Aligned_cols=32 Identities=19% Similarity=0.320 Sum_probs=25.8
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+--++-..+.|.|++|+|||||+..|++....
T Consensus 47 i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~ 78 (725)
T PRK13341 47 IKADRVGSLILYGPPGVGKTTLARIIANHTRA 78 (725)
T ss_pred HhcCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 33455567899999999999999999987544
No 109
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.91 E-value=0.005 Score=61.85 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.|.+|++.||+|++|+|||||+..|+.....
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 368999999999999999999999999876543
No 110
>PF13173 AAA_14: AAA domain
Probab=95.82 E-value=0.013 Score=52.32 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=20.5
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+-+.|.|++|+|||||+.++++..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~ 26 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDL 26 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 446799999999999999988754
No 111
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=95.60 E-value=0.0057 Score=61.61 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=28.4
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.+.|.|+||||||||+..||.-.
T Consensus 22 i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 22 INLSVEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999999998653
No 112
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.49 E-value=0.026 Score=60.27 Aligned_cols=28 Identities=25% Similarity=0.272 Sum_probs=24.1
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVV 275 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V 275 (516)
+||+||+|+|||.++..||+...+..++
T Consensus 151 llL~GPPGcGKTllAraiA~elg~~~i~ 178 (413)
T PLN00020 151 LGIWGGKGQGKSFQCELVFKKMGIEPIV 178 (413)
T ss_pred EEeeCCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6899999999999999999988775433
No 113
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=95.38 E-value=0.19 Score=50.06 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=94.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhc-cCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeC----C
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKY-SNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANT----S 319 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~-~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~t----s 319 (516)
|+=+.|.|+.|+|||+|+++++-. ...+..|....-| ..+++|+..+-.+..+. .+-.+.-...++.. .
T Consensus 28 GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe--~T~refi~qm~sl~ydv----~~~~l~G~l~~~~~~~~~~ 101 (235)
T COG2874 28 GSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE--LTVREFIKQMESLSYDV----SDFLLSGRLLFFPVNLEPV 101 (235)
T ss_pred CeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec--hhHHHHHHHHHhcCCCc----hHHHhcceeEEEEeccccc
Confidence 677899999999999999998854 3456656555555 35677776542222221 12234444455553 3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCC
Q 010179 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLG 399 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~ 399 (516)
+.-...+..--. -+.|+.+-.-+|| +++||++-++.--. ....-.|++.+.++..+
T Consensus 102 ~~~~~~~~~~L~---~l~~~~k~~~~dV-iIIDSls~~~~~~~-------------------~~~vl~fm~~~r~l~d~- 157 (235)
T COG2874 102 NWGRRSARKLLD---LLLEFIKRWEKDV-IIIDSLSAFATYDS-------------------EDAVLNFMTFLRKLSDL- 157 (235)
T ss_pred ccChHHHHHHHH---HHHhhHHhhcCCE-EEEecccHHhhccc-------------------HHHHHHHHHHHHHHHhC-
Confidence 332222222111 2334444444555 57899995543211 23455677777777422
Q ss_pred CCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHh
Q 010179 400 GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKK 441 (516)
Q Consensus 400 ~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~ 441 (516)
|- |++.||.+ +.+.+.+..-.+++-|+++-|+.+
T Consensus 158 -----gK-vIilTvhp--~~l~e~~~~rirs~~d~~l~L~~~ 191 (235)
T COG2874 158 -----GK-VIILTVHP--SALDEDVLTRIRSACDVYLRLRLE 191 (235)
T ss_pred -----CC-EEEEEeCh--hhcCHHHHHHHHHhhheeEEEEhh
Confidence 32 55555544 468888888889999999998854
No 114
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.36 E-value=0.044 Score=52.10 Aligned_cols=88 Identities=20% Similarity=0.290 Sum_probs=54.3
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEEeeCC-chhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE-RGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 326 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGe-R~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r 326 (516)
+.|.|++|+|||+++.+++...... ++|....+ ...|+.+.++.+-+. ++.. -++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~-~~y~at~~~~d~em~~rI~~H~~~-------R~~~---w~t------------- 57 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGP-VTYIATAEAFDDEMAERIARHRKR-------RPAH---WRT------------- 57 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCC-eEEEEccCcCCHHHHHHHHHHHHh-------CCCC---ceE-------------
Confidence 4689999999999999988764333 44544444 467788877653110 1111 111
Q ss_pred HHHHHHHHHHHHHHHHC-CCcEEEEEecchHHHHHHHH
Q 010179 327 EASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEALRE 363 (516)
Q Consensus 327 ~~a~~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A~re 363 (516)
......+++.+.+. +.+ ++++|++|-|...+..
T Consensus 58 ---~E~~~~l~~~l~~~~~~~-~VLIDclt~~~~n~l~ 91 (169)
T cd00544 58 ---IETPRDLVSALKELDPGD-VVLIDCLTLWVTNLLF 91 (169)
T ss_pred ---eecHHHHHHHHHhcCCCC-EEEEEcHhHHHHHhCC
Confidence 11223455556553 444 6899999999887753
No 115
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=95.29 E-value=0.026 Score=57.51 Aligned_cols=28 Identities=18% Similarity=0.269 Sum_probs=24.0
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+.+.+.|++|+|||+|+..+++....++
T Consensus 31 ~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 4578999999999999999998776554
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.019 Score=59.08 Aligned_cols=43 Identities=19% Similarity=0.280 Sum_probs=28.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEE-eeCCchhHHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYV-GCGERGNEMAEVL 290 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~-~iGeR~~Ev~e~~ 290 (516)
+++|||||.|||||++-||+.....+-+-. -.=||+.++.-++
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~gDlaaiL 98 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPGDLAAIL 98 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChhhHHHHH
Confidence 689999999999999999987665543222 2223444444443
No 117
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.27 E-value=0.0097 Score=56.95 Aligned_cols=35 Identities=29% Similarity=0.178 Sum_probs=30.1
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++-.+.+.+|..++|.|++|+|||||+..|+....
T Consensus 16 l~~~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 16 LVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred EccCcEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34346899999999999999999999999997643
No 118
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.27 E-value=0.018 Score=60.29 Aligned_cols=119 Identities=19% Similarity=0.222 Sum_probs=68.9
Q ss_pred cccccccccccccccc---ccCCccccCCCCCCCchHhHHHh-hhccCCC-EEEEEeeCCchhHHHHHHHhccccccCCC
Q 010179 227 TPLLTGQRVLDALFPS---VLGGTCAIPGAFGCGKTVISQAL-SKYSNSD-TVVYVGCGERGNEMAEVLMDFPQLTMTLP 301 (516)
Q Consensus 227 epl~TGiraID~l~pi---gkGqr~~I~g~~g~GKT~Ll~~i-a~~~~~d-~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~ 301 (516)
+.+.||.-++|..++. -+|.-+=|+|++++|||+|+... ++....+ .++|.-+ |..-.. ++.+.+
T Consensus 32 ~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~-e~~ld~-~~a~~l-------- 101 (322)
T PF00154_consen 32 EVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA-EHALDP-EYAESL-------- 101 (322)
T ss_dssp -EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES-SS---H-HHHHHT--------
T ss_pred ceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC-cccchh-hHHHhc--------
Confidence 5689999999999983 36777889999999999998754 4433334 4555544 433332 344431
Q ss_pred CCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCC
Q 010179 302 DGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAE 370 (516)
Q Consensus 302 ~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge 370 (516)
+-+ ++|- +++- .+. ...|+.++|.+...|.-.++++||+... --..|+-..+++
T Consensus 102 ---Gvd-l~rl-lv~~-P~~--------~E~al~~~e~lirsg~~~lVVvDSv~al-~p~~E~e~~~~~ 155 (322)
T PF00154_consen 102 ---GVD-LDRL-LVVQ-PDT--------GEQALWIAEQLIRSGAVDLVVVDSVAAL-VPKAELEGEIGD 155 (322)
T ss_dssp ---T---GGGE-EEEE--SS--------HHHHHHHHHHHHHTTSESEEEEE-CTT--B-HHHHTTSTSS
T ss_pred ---Ccc-ccce-EEec-CCc--------HHHHHHHHHHHhhcccccEEEEecCccc-CCHHHHhhcccc
Confidence 112 4554 3333 221 1346788999988887778999998633 233455555554
No 119
>PRK05973 replicative DNA helicase; Provisional
Probab=95.24 E-value=0.085 Score=53.02 Aligned_cols=53 Identities=17% Similarity=0.183 Sum_probs=41.9
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
-+-+|.-+.|.|+||+|||+++.+++.+. +..-++|.-.-|..+++.+-...+
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes~~~i~~R~~s~ 114 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYTEQDVRDRLRAL 114 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHc
Confidence 45789999999999999999999887643 334478888888888888866653
No 120
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=95.23 E-value=0.011 Score=56.31 Aligned_cols=33 Identities=27% Similarity=0.340 Sum_probs=28.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 12 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 44 (190)
T TIGR01166 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRP 44 (190)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 367889999999999999999999999876443
No 121
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.22 E-value=0.011 Score=57.79 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=28.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+.+|+....
T Consensus 23 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 23 NFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 46889999999999999999999999997753
No 122
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.14 E-value=0.046 Score=60.20 Aligned_cols=107 Identities=18% Similarity=0.191 Sum_probs=57.0
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~ 325 (516)
-.++.|++|+||||++..+|+...... .-.-.||+-.. -.++... ... . ++-.+.++..-..
T Consensus 42 a~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~s-C~~i~~g-----------~~~----d-viEIdaas~~gVd 104 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTS-CLEITKG-----------ISS----D-VLEIDAASNRGIE 104 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcH-HHHHHcc-----------CCc----c-ceeechhhcccHH
Confidence 368999999999999999998754321 11234554322 2233211 000 1 1112221111111
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH-HHHHHHhhcCCCCC
Q 010179 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPA 373 (516)
Q Consensus 326 r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~-A~reis~~~ge~p~ 373 (516)
..+... .-+.|....|+..++++|...++.. |++.+=..+.|||.
T Consensus 105 ~IReL~---e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~ 150 (484)
T PRK14956 105 NIRELR---DNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPA 150 (484)
T ss_pred HHHHHH---HHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCC
Confidence 222111 1122222457788899999988765 67777777778763
No 123
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=95.14 E-value=0.011 Score=56.86 Aligned_cols=33 Identities=18% Similarity=0.196 Sum_probs=29.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 21 sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~ 53 (214)
T cd03292 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELP 53 (214)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 367889999999999999999999999987543
No 124
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.08 E-value=0.012 Score=55.51 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999999999987643
No 125
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=95.05 E-value=0.013 Score=56.55 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 21 SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999999987643
No 126
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.01 E-value=0.018 Score=55.52 Aligned_cols=34 Identities=24% Similarity=0.453 Sum_probs=29.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+.+-+|.+++|.||+|+|||||+.++|+-...|.
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~ 57 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTS 57 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccCCCC
Confidence 5678999999999999999999999998765554
No 127
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=95.00 E-value=0.013 Score=56.77 Aligned_cols=32 Identities=28% Similarity=0.357 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 25 SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997644
No 128
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.98 E-value=0.07 Score=59.72 Aligned_cols=106 Identities=17% Similarity=0.248 Sum_probs=52.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEE-EEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVV-YVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAR 326 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V-~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r 326 (516)
.++.|++|+|||+++..+|+......-+ -..||. +..-..+ .. +.....+-+ +.++..-...
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~-C~sC~~i-~~--------------~~~~dliei-daas~~gvd~ 103 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNK-CENCVAI-NN--------------NSFIDLIEI-DAASRTGVEE 103 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcc-cHHHHHH-hc--------------CCCCceEEe-ecccccCHHH
Confidence 4688999999999999999854321000 012332 1111111 10 001112222 1111111222
Q ss_pred HHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH-HHHHHHhhcCCCCC
Q 010179 327 EASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPA 373 (516)
Q Consensus 327 ~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~-A~reis~~~ge~p~ 373 (516)
.+... .-+++..-.|+..++++|+..++.. |++.+-..+.+||.
T Consensus 104 ir~ii---~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~ 148 (546)
T PRK14957 104 TKEIL---DNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPE 148 (546)
T ss_pred HHHHH---HHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCC
Confidence 22221 2233444467777888888877765 66666666777653
No 129
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.95 E-value=0.014 Score=56.23 Aligned_cols=31 Identities=26% Similarity=0.393 Sum_probs=27.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5788999999999999999999999998643
No 130
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.93 E-value=0.014 Score=56.49 Aligned_cols=32 Identities=25% Similarity=0.335 Sum_probs=28.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~ 56 (218)
T cd03255 25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRP 56 (218)
T ss_pred EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCC
Confidence 67889999999999999999999999976543
No 131
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.92 E-value=0.014 Score=57.12 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=28.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999999999998754
No 132
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.91 E-value=0.015 Score=57.36 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 22 NLNINPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36789999999999999999999999997643
No 133
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.015 Score=56.61 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=29.9
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+....+
T Consensus 18 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~ 52 (220)
T cd03265 18 GVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKP 52 (220)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 33467889999999999999999999999976443
No 134
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.90 E-value=0.015 Score=55.84 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=29.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 53 (200)
T PRK13540 21 SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNP 53 (200)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 467889999999999999999999999876543
No 135
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.88 E-value=0.015 Score=56.04 Aligned_cols=32 Identities=22% Similarity=0.225 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 20 SFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999997643
No 136
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.88 E-value=0.015 Score=54.31 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.7
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~ 52 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKP 52 (163)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67889999999999999999999999987543
No 137
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.84 E-value=0.015 Score=55.80 Aligned_cols=32 Identities=28% Similarity=0.282 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 25 NLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 46888999999999999999999999987643
No 138
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=94.83 E-value=0.024 Score=49.73 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=18.9
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++-+.|.|++|+|||+++..++++.
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4556789999999999999998764
No 139
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.83 E-value=0.016 Score=57.21 Aligned_cols=32 Identities=22% Similarity=0.301 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 22 TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997654
No 140
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.83 E-value=0.016 Score=56.36 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 25 SFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45778999999999999999999999997643
No 141
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.82 E-value=0.016 Score=55.55 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 18 NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45788999999999999999999999997644
No 142
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.82 E-value=0.016 Score=56.07 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5788999999999999999999999987643
No 143
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.80 E-value=0.016 Score=56.65 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=29.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred eeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999999997643
No 144
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.78 E-value=0.016 Score=56.03 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 23 NFHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997643
No 145
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.78 E-value=0.017 Score=55.64 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5788999999999999999999999997643
No 146
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.77 E-value=0.017 Score=56.82 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 20 DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46889999999999999999999999997654
No 147
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.77 E-value=0.016 Score=56.53 Aligned_cols=31 Identities=26% Similarity=0.472 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 20 SLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999999998765
No 148
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.76 E-value=0.016 Score=56.25 Aligned_cols=32 Identities=22% Similarity=0.261 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 20 SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 149
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.017 Score=54.33 Aligned_cols=32 Identities=19% Similarity=0.251 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 20 SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45778999999999999999999999998643
No 150
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.017 Score=56.77 Aligned_cols=31 Identities=23% Similarity=0.305 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 21 SLSINPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3678899999999999999999999999764
No 151
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.75 E-value=0.047 Score=56.72 Aligned_cols=28 Identities=18% Similarity=0.290 Sum_probs=23.9
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
..+.|.|++|+|||+|+..+|+....++
T Consensus 52 ~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 52 DHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 4578999999999999999998876553
No 152
>PF05729 NACHT: NACHT domain
Probab=94.73 E-value=0.057 Score=48.74 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=25.5
Q ss_pred cccCCCCCCCchHhHHHhhhcc----C-C---CEEEEEeeCCchh
Q 010179 248 CAIPGAFGCGKTVISQALSKYS----N-S---DTVVYVGCGERGN 284 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~----~-~---d~~V~~~iGeR~~ 284 (516)
+.|.|++|+|||+++..++.+. . . .+++|..+++...
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISD 47 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhh
Confidence 5789999999999999887542 1 1 2455555555443
No 153
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.69 E-value=0.017 Score=61.10 Aligned_cols=37 Identities=22% Similarity=0.410 Sum_probs=31.3
Q ss_pred ccccc-cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 233 QRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 233 iraID-~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..++| .=+.|.+|.-+.+.||||||||||+.+||.-.
T Consensus 18 ~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe 55 (352)
T COG3842 18 FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE 55 (352)
T ss_pred eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 44444 55789999999999999999999999999754
No 154
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.68 E-value=0.014 Score=51.67 Aligned_cols=28 Identities=29% Similarity=0.219 Sum_probs=25.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhh
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
-+.+..|+.++|.|++|+|||||+.++.
T Consensus 9 sl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 9 LVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3467889999999999999999999887
No 155
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.018 Score=56.77 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 22 SLDIPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46888999999999999999999999987643
No 156
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.67 E-value=0.019 Score=55.45 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=30.6
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|++++|.|++|+|||||+..|+....
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6668899999999999999999999999987643
No 157
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.65 E-value=0.019 Score=55.53 Aligned_cols=32 Identities=25% Similarity=0.403 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 20 SLTVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 158
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.64 E-value=0.018 Score=56.61 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5788999999999999999999999997643
No 159
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.64 E-value=0.019 Score=56.15 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 20 SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred eeEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997643
No 160
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.63 E-value=0.019 Score=55.69 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 55 (220)
T cd03245 24 SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK 55 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 36788999999999999999999999987643
No 161
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.63 E-value=0.019 Score=55.50 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 22 SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45788999999999999999999999998643
No 162
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.63 E-value=0.019 Score=54.09 Aligned_cols=33 Identities=24% Similarity=0.246 Sum_probs=29.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+-+|+.++|.|++|+|||||+.+|+....
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346778999999999999999999999998754
No 163
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.61 E-value=0.019 Score=54.91 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=29.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|++++|.|++|+|||||+..|+....
T Consensus 18 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346788999999999999999999999998643
No 164
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.61 E-value=0.019 Score=54.35 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 20 s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 20 SFEVRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999998654
No 165
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.61 E-value=0.019 Score=55.34 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 20 NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999999999997643
No 166
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=94.60 E-value=0.26 Score=53.16 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=23.9
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
..+++.|++|+|||+|+..+|+......
T Consensus 180 kgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 180 RGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 3488999999999999999999876544
No 167
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.60 E-value=0.019 Score=56.58 Aligned_cols=32 Identities=19% Similarity=0.162 Sum_probs=28.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 23 SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46888999999999999999999999998753
No 168
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.58 E-value=0.019 Score=56.71 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 21 NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 169
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.57 E-value=0.02 Score=55.29 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6788999999999999999999999987643
No 170
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.57 E-value=0.02 Score=55.12 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|++++|+|++|+|||||+..|+....
T Consensus 18 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 18 GLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3346788999999999999999999999997653
No 171
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.57 E-value=0.02 Score=55.89 Aligned_cols=33 Identities=24% Similarity=0.314 Sum_probs=29.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p 62 (228)
T PRK10584 30 ELVVKRGETIALIGESGSGKSTLLAILAGLDDG 62 (228)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 467889999999999999999999999987543
No 172
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.56 E-value=0.019 Score=56.23 Aligned_cols=32 Identities=25% Similarity=0.361 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred eEEecCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 36788999999999999999999999987643
No 173
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.53 E-value=0.092 Score=57.79 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=20.2
Q ss_pred cccCCCCCCCchHhHHHhhhccC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++.||+|+||||++..+|+...
T Consensus 39 ~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 39 YIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57999999999999999988643
No 174
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.53 E-value=0.02 Score=53.07 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=24.2
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAE 288 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e 288 (516)
|+.|.|++++|||||+..|++. ++.+ +.|-++++.+
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~---g~~~---v~E~ar~~~~ 36 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR---GYPV---VPEYAREIIE 36 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH---T-EE---E--TTHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc---CCeE---EeecHHHHHH
Confidence 6889999999999999999987 4443 3777777654
No 175
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.53 E-value=0.015 Score=51.73 Aligned_cols=32 Identities=28% Similarity=0.348 Sum_probs=28.4
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~ 37 (137)
T PF00005_consen 6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPP 37 (137)
T ss_dssp EEEETTSEEEEEESTTSSHHHHHHHHTTSSHE
T ss_pred EEEcCCCEEEEEccCCCccccceeeecccccc
Confidence 56889999999999999999999999877544
No 176
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.52 E-value=0.022 Score=53.38 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|++++|.|++|+|||||+..|+....
T Consensus 21 ~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 21 SFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 177
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.51 E-value=0.021 Score=55.78 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4678999999999999999999999998753
No 178
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.49 E-value=0.021 Score=56.53 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 21 DISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446788999999999999999999999997643
No 179
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=94.49 E-value=0.021 Score=57.07 Aligned_cols=33 Identities=33% Similarity=0.345 Sum_probs=29.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 25 VSFDLYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346789999999999999999999999998643
No 180
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=94.48 E-value=0.021 Score=57.25 Aligned_cols=31 Identities=23% Similarity=0.415 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999999764
No 181
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.48 E-value=0.022 Score=53.91 Aligned_cols=32 Identities=22% Similarity=0.319 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 19 ~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 19 SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678999999999999999999999987643
No 182
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.47 E-value=0.021 Score=55.24 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 25 SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4678899999999999999999999999764
No 183
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.47 E-value=0.022 Score=53.48 Aligned_cols=32 Identities=25% Similarity=0.345 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 22 SFSIEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 36778999999999999999999999997654
No 184
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.47 E-value=0.021 Score=55.50 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 24 SLSVEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998764
No 185
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.46 E-value=0.021 Score=56.18 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=28.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 22 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 22 LSLTIPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred eEEEecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 34678899999999999999999999999764
No 186
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.46 E-value=0.018 Score=57.05 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 23 NLEIPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3678899999999999999999999999764
No 187
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.45 E-value=0.021 Score=57.43 Aligned_cols=32 Identities=19% Similarity=0.276 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 31 SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46788999999999999999999999997643
No 188
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.45 E-value=0.022 Score=56.39 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 23 DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 189
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.43 E-value=0.19 Score=50.55 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=22.1
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
..+..+.+.||||+|||+++..+++.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHH
Confidence 44566889999999999999998864
No 190
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.41 E-value=0.023 Score=55.14 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 22 SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999997643
No 191
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.41 E-value=0.019 Score=56.38 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=27.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 20 NLTVKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred ceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999875
No 192
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=94.39 E-value=0.023 Score=56.06 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 21 DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999997644
No 193
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.37 E-value=0.02 Score=56.89 Aligned_cols=31 Identities=23% Similarity=0.442 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 24 DLKIPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4688999999999999999999999998764
No 194
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=94.37 E-value=0.023 Score=55.82 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 22 SLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4678899999999999999999999999764
No 195
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.35 E-value=0.02 Score=54.74 Aligned_cols=28 Identities=18% Similarity=0.168 Sum_probs=25.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhh
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
=+.+.+|++++|.|++|+|||||+..+.
T Consensus 15 sl~i~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 15 DVSIPLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999999999885
No 196
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.35 E-value=0.094 Score=57.98 Aligned_cols=23 Identities=30% Similarity=0.398 Sum_probs=19.9
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+-.++.|++|+||||++..+|+.
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~ 58 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLC 58 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 35779999999999999998874
No 197
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.35 E-value=0.024 Score=54.58 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 20 SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 35788999999999999999999999997643
No 198
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=94.34 E-value=0.024 Score=55.78 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35788999999999999999999999997653
No 199
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=94.32 E-value=0.023 Score=57.36 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=30.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 59 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRL 59 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34468889999999999999999999999976433
No 200
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=94.32 E-value=0.024 Score=56.35 Aligned_cols=32 Identities=28% Similarity=0.392 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 20 NFSVAAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999997643
No 201
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.31 E-value=0.093 Score=59.87 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=54.5
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~ 325 (516)
-.++.|++|+|||+++..+|+...... .--..||.- .--..+-+ +..-..+-+-+.++.. ..
T Consensus 39 AyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C-~sC~~I~~---------------g~hpDviEIDAAs~~~-Vd 101 (702)
T PRK14960 39 AYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVC-ATCKAVNE---------------GRFIDLIEIDAASRTK-VE 101 (702)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccC-HHHHHHhc---------------CCCCceEEecccccCC-HH
Confidence 347889999999999999998753311 001123321 11111100 0001112222222222 22
Q ss_pred HHHHHHHHHHHHHHHHHCCCcEEEEEecchHHH-HHHHHHHhhcCCCCC
Q 010179 326 REASIYTGITIAEYFRDMGYNVSMMADSTSRWA-EALREISGRLAEMPA 373 (516)
Q Consensus 326 r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a-~A~reis~~~ge~p~ 373 (516)
..+.. +.-+.|..-.|+.-++|+|...++. .|.+.+-..+.++|.
T Consensus 102 dIRel---i~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 102 DTREL---LDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPE 147 (702)
T ss_pred HHHHH---HHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCC
Confidence 22222 2223333345777778888887774 577777777777764
No 202
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.31 E-value=0.025 Score=57.02 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=27.8
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.+.+|++++|.|++|+|||||+..|+....+
T Consensus 22 ~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p 52 (255)
T cd03236 22 VPREGQVLGLVGPNGIGKSTALKILAGKLKP 52 (255)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCcCC
Confidence 3889999999999999999999999987544
No 203
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.30 E-value=0.025 Score=55.46 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 27 SFSLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678899999999999999999999998764
No 204
>PRK10908 cell division protein FtsE; Provisional
Probab=94.29 E-value=0.025 Score=55.04 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=28.7
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 54 (222)
T PRK10908 23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERP 54 (222)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 67889999999999999999999999977543
No 205
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=94.28 E-value=0.024 Score=55.00 Aligned_cols=31 Identities=26% Similarity=0.357 Sum_probs=27.8
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (218)
T cd03290 22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 5788999999999999999999999997643
No 206
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.28 E-value=0.025 Score=55.75 Aligned_cols=31 Identities=23% Similarity=0.242 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 22 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 22 SLYVDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999999764
No 207
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=94.27 E-value=0.021 Score=60.12 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=27.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.=+.+..|.-+.+.||+||||||||.+||.=
T Consensus 22 i~l~i~~Gef~vllGPSGcGKSTlLr~IAGL 52 (338)
T COG3839 22 VNLDIEDGEFVVLLGPSGCGKSTLLRMIAGL 52 (338)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999999999864
No 208
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.27 E-value=0.025 Score=55.36 Aligned_cols=31 Identities=23% Similarity=0.416 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4578899999999999999999999998764
No 209
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=94.26 E-value=0.022 Score=56.55 Aligned_cols=32 Identities=22% Similarity=0.365 Sum_probs=28.6
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|.=+.+.+|+.++|.|++|+|||||+.+|+..
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 21 KINLDIEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 44577889999999999999999999999874
No 210
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.26 E-value=0.021 Score=49.73 Aligned_cols=24 Identities=25% Similarity=0.443 Sum_probs=21.2
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++|.|++|+||||++.++++..+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~ 24 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG 24 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
Confidence 468999999999999999998753
No 211
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.25 E-value=0.022 Score=56.91 Aligned_cols=31 Identities=26% Similarity=0.340 Sum_probs=27.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 32 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 32 NLSIPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999999998653
No 212
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.24 E-value=0.026 Score=55.48 Aligned_cols=32 Identities=28% Similarity=0.358 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 29 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 29 SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36788999999999999999999999997643
No 213
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=94.24 E-value=0.025 Score=56.97 Aligned_cols=32 Identities=25% Similarity=0.392 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 32 sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 32 DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999999997653
No 214
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=94.23 E-value=0.026 Score=56.10 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=29.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 23 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~ 55 (253)
T TIGR02323 23 SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAP 55 (253)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467889999999999999999999999987543
No 215
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=94.23 E-value=0.026 Score=55.82 Aligned_cols=32 Identities=28% Similarity=0.295 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+.+|+....
T Consensus 41 s~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~ 72 (236)
T cd03267 41 SFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ 72 (236)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36788999999999999999999999997643
No 216
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=94.22 E-value=0.025 Score=59.79 Aligned_cols=33 Identities=21% Similarity=0.297 Sum_probs=29.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|+|++|+|||||+.+|+....
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 446788999999999999999999999997643
No 217
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.025 Score=56.80 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=28.2
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|++++|.|++|+|||||+..|+....
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred eEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 6788999999999999999999999997654
No 218
>PRK08118 topology modulation protein; Reviewed
Probab=94.21 E-value=0.024 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.340 Sum_probs=23.0
Q ss_pred CccccCCCCCCCchHhHHHhhhccCC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+|+.|+|++|+|||||+..|++..+.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999987543
No 219
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.21 E-value=0.026 Score=58.00 Aligned_cols=33 Identities=24% Similarity=0.280 Sum_probs=29.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+.+|+.-..+
T Consensus 13 s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p 45 (302)
T TIGR01188 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRP 45 (302)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 468889999999999999999999999976443
No 220
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.21 E-value=0.023 Score=56.47 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=26.7
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|+|++|+|||||+..|+.-
T Consensus 26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 26 LDFNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 57889999999999999999999999864
No 221
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.026 Score=56.82 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=29.5
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346788999999999999999999999997643
No 222
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.19 E-value=0.027 Score=55.34 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=30.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 17 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5567899999999999999999999999987643
No 223
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.18 E-value=0.028 Score=54.19 Aligned_cols=34 Identities=26% Similarity=0.346 Sum_probs=29.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 19 ~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred cceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3356788999999999999999999999997643
No 224
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=94.17 E-value=0.027 Score=55.16 Aligned_cols=30 Identities=23% Similarity=0.282 Sum_probs=26.9
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.+.+|+.++|.|++|+|||||+..|+....
T Consensus 2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 2 SADKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 567899999999999999999999997643
No 225
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.16 E-value=0.027 Score=54.85 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.8
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999999987643
No 226
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.16 E-value=0.051 Score=54.70 Aligned_cols=54 Identities=22% Similarity=0.388 Sum_probs=41.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC--EEEEEe---eCCchhHHHHHHHh
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD--TVVYVG---CGERGNEMAEVLMD 292 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d--~~V~~~---iGeR~~Ev~e~~~~ 292 (516)
-+.|-+|+.++|+|++|+|||||+.+|..-.+.. -+.+-. ++-++.|++++...
T Consensus 24 nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 24 NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 4678899999999999999999999998765432 233333 66777888877653
No 227
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=94.16 E-value=0.027 Score=56.83 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=29.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 357889999999999999999999999997643
No 228
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=94.15 E-value=0.027 Score=55.24 Aligned_cols=32 Identities=22% Similarity=0.227 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+.+|+....
T Consensus 6 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35788999999999999999999999998654
No 229
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.15 E-value=0.063 Score=54.28 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=24.2
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|..+.+.|++|+|||.|+..|++..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l 129 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNEL 129 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHH
Confidence 89999999999999999999999864
No 230
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.07 Score=60.82 Aligned_cols=106 Identities=20% Similarity=0.290 Sum_probs=57.9
Q ss_pred ccCCCCCCCchHhHHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHH
Q 010179 249 AIPGAFGCGKTVISQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (516)
Q Consensus 249 ~I~g~~g~GKT~Ll~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~ 327 (516)
++.|++|+||||++..+|+...+.. .----||+- .--.++-+. . ....+.+ +.++..-.+..
T Consensus 42 Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C-~~C~~i~~g-----------~----~~D~iei-daas~~~Vddi 104 (647)
T PRK07994 42 LFSGTRGVGKTTIARLLAKGLNCETGITATPCGEC-DNCREIEQG-----------R----FVDLIEI-DAASRTKVEDT 104 (647)
T ss_pred EEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCC-HHHHHHHcC-----------C----CCCceee-cccccCCHHHH
Confidence 7889999999999999998754321 011135542 222222110 0 0111222 22211122223
Q ss_pred HHHHHHHHHHHHHHHCCCcEEEEEecchHHHH-HHHHHHhhcCCCCCC
Q 010179 328 ASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPAD 374 (516)
Q Consensus 328 ~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~-A~reis~~~ge~p~~ 374 (516)
+-.. .-+.|-.-+|+.-++|+|...++.. |++.+=..+.|||..
T Consensus 105 R~li---~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~ 149 (647)
T PRK07994 105 RELL---DNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEH 149 (647)
T ss_pred HHHH---HHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCC
Confidence 3222 1222222468888899999888874 888888888998743
No 231
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.027 Score=57.03 Aligned_cols=33 Identities=27% Similarity=0.247 Sum_probs=29.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p 59 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467889999999999999999999999976543
No 232
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.12 E-value=0.028 Score=54.62 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|++++|.|++|+|||||+..|+.-.
T Consensus 31 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 31 DFHVDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred eEEECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999998754
No 233
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=94.12 E-value=0.029 Score=54.67 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 28 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 28 SLTVNAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46888999999999999999999999997643
No 234
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.12 E-value=0.2 Score=49.80 Aligned_cols=25 Identities=36% Similarity=0.506 Sum_probs=21.8
Q ss_pred CccccCCCCCCCchHhHHHhhhccC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+-+.|.|++|+|||||+..+++...
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999988754
No 235
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.12 E-value=0.028 Score=56.75 Aligned_cols=31 Identities=35% Similarity=0.414 Sum_probs=28.3
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 30 FEINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 6788999999999999999999999987754
No 236
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=94.10 E-value=0.15 Score=52.47 Aligned_cols=111 Identities=18% Similarity=0.165 Sum_probs=68.8
Q ss_pred Cccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEE-eeC-CchhHHHHHHHhccccccC
Q 010179 226 DTPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYV-GCG-ERGNEMAEVLMDFPQLTMT 299 (516)
Q Consensus 226 ~epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~-~iG-eR~~Ev~e~~~~~~~~~~~ 299 (516)
.+.+.||.+.+|.++- +-+|.-.=|||++|+|||+|+.+++-++ ..+.++|. .-| -++.....+...+
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~------ 112 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEHALDPERAKQLGVDL------ 112 (279)
T ss_pred cccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCCCCCHHHHHHHHHhh------
Confidence 5668899999999987 1156667799999999999999877553 23344444 444 3344444333220
Q ss_pred CCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCC--cEEEEEecchHHHHHH
Q 010179 300 LPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGY--NVSMMADSTSRWAEAL 361 (516)
Q Consensus 300 ~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~--~Vlll~Dsltr~a~A~ 361 (516)
..-++++..+. ..-++.+++++...+. ==|+++||++-+-++.
T Consensus 113 -----------~d~l~v~~~~~--------~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~ 157 (279)
T COG0468 113 -----------LDNLLVSQPDT--------GEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAE 157 (279)
T ss_pred -----------hcceeEecCCC--------HHHHHHHHHHHHHhccCCCCEEEEecCcccchhh
Confidence 11233344432 2345566666665544 3488999998665554
No 237
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=94.10 E-value=0.028 Score=56.36 Aligned_cols=31 Identities=16% Similarity=0.228 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 24 SLELKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999998764
No 238
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=94.08 E-value=0.03 Score=53.93 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=27.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 28 sl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 28 SFKVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3678899999999999999999999998764
No 239
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.08 E-value=0.025 Score=56.22 Aligned_cols=29 Identities=24% Similarity=0.444 Sum_probs=26.8
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 27 LEFEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EEEeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 57889999999999999999999999864
No 240
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=94.07 E-value=0.03 Score=59.08 Aligned_cols=35 Identities=31% Similarity=0.350 Sum_probs=31.1
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+|.=+.+.+|+.++|+|++|+|||||+.+|+....
T Consensus 15 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~ 49 (352)
T PRK11144 15 LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR 49 (352)
T ss_pred EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 47778899999999999999999999999987643
No 241
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.06 E-value=0.025 Score=56.15 Aligned_cols=30 Identities=27% Similarity=0.468 Sum_probs=27.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 23 ~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 23 TMKIFKNQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred eEeecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999964
No 242
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.06 E-value=0.028 Score=57.27 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 31 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 62 (289)
T PRK13645 31 SLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII 62 (289)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36888999999999999999999999987653
No 243
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.05 E-value=0.029 Score=56.62 Aligned_cols=32 Identities=28% Similarity=0.372 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 21 NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46788999999999999999999999987643
No 244
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.04 E-value=0.029 Score=56.48 Aligned_cols=33 Identities=24% Similarity=0.336 Sum_probs=29.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+-+|.++||+|..|+|||||++.|+.-.
T Consensus 45 disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~ 77 (249)
T COG1134 45 DISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY 77 (249)
T ss_pred CceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence 445789999999999999999999999998764
No 245
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.03 E-value=0.026 Score=56.22 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 27 NIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 36788999999999999999999999987643
No 246
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=94.03 E-value=0.12 Score=52.22 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=30.0
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCC-EEEEEeeCCchhHHHHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSD-TVVYVGCGERGNEMAEVL 290 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d-~~V~~~iGeR~~Ev~e~~ 290 (516)
|+.|.|++|+|||+|+..|....... -.||....+...+..+++
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i 59 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYI 59 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhc
Confidence 68899999999999999877654332 255555555555554443
No 247
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=94.01 E-value=0.029 Score=59.38 Aligned_cols=34 Identities=18% Similarity=0.303 Sum_probs=29.7
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|+.++|+|++|+|||||+.+|+.-...
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p 56 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI 56 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCC
Confidence 4578889999999999999999999999976443
No 248
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=94.01 E-value=0.03 Score=57.62 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+.+|+....
T Consensus 24 sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 24 SFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997643
No 249
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=94.00 E-value=0.03 Score=57.16 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=29.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 27 sl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p 59 (287)
T PRK13641 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKP 59 (287)
T ss_pred EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 467889999999999999999999999977543
No 250
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.025 Score=56.44 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 24 NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678899999999999999999999999764
No 251
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.99 E-value=0.032 Score=52.33 Aligned_cols=31 Identities=26% Similarity=0.375 Sum_probs=28.2
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 6788999999999999999999999998653
No 252
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=93.98 E-value=0.027 Score=54.24 Aligned_cols=30 Identities=20% Similarity=0.298 Sum_probs=27.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 20 s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 20 NLTIKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467889999999999999999999999876
No 253
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.97 E-value=0.027 Score=56.67 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=26.7
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 42 MDIEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 57889999999999999999999999874
No 254
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.032 Score=53.85 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+| .++|.|++|+|||||+.+|+...
T Consensus 20 s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 20 SLTLGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred eEEEcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3567788 99999999999999999999754
No 255
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.95 E-value=0.032 Score=51.17 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=28.3
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+-+|+.++|.|++|+|||||+..|+.....
T Consensus 21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~ 52 (144)
T cd03221 21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEP 52 (144)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 46779999999999999999999999987543
No 256
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=93.95 E-value=0.03 Score=59.16 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=29.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+..|+.++|+|++|+|||||+.+|+....
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 456788999999999999999999999997643
No 257
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=93.94 E-value=0.032 Score=56.08 Aligned_cols=34 Identities=24% Similarity=0.432 Sum_probs=29.6
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 29 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 29 NVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred CceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3347889999999999999999999999997643
No 258
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=93.94 E-value=0.031 Score=59.13 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=28.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|+|++|+|||||+.+|+.-..
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 446788999999999999999999999987543
No 259
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=93.94 E-value=0.027 Score=58.82 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+.+|+...
T Consensus 27 sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 27 SMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3589999999999999999999999998764
No 260
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=93.93 E-value=0.38 Score=51.55 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+++.|+||+|||+|+..+|+..+...
T Consensus 168 vLL~GppGtGKT~lAkaia~~~~~~~ 193 (389)
T PRK03992 168 VLLYGPPGTGKTLLAKAVAHETNATF 193 (389)
T ss_pred eEEECCCCCChHHHHHHHHHHhCCCE
Confidence 78999999999999999999876543
No 261
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.032 Score=54.67 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=29.2
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 3346788999999999999999999999997643
No 262
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=93.93 E-value=0.088 Score=48.72 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=23.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC--CCEEEEEeeCCc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGER 282 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~--~d~~V~~~iGeR 282 (516)
...-+.+.-+.|.|++|+|||+|+..+..+.. ..+++..-+-..
T Consensus 18 ~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 18 AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 45667778899999999999999997765432 223444444443
No 263
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=93.92 E-value=0.033 Score=54.29 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=28.1
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 6788999999999999999999999987643
No 264
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.92 E-value=0.03 Score=55.61 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 25 NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46788999999999999999999999997643
No 265
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.92 E-value=0.032 Score=55.97 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=27.6
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 23 LTLRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999999999764
No 266
>PRK07261 topology modulation protein; Provisional
Probab=93.91 E-value=0.033 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.5
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|++|+|.+|+|||||+.+|++..
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998754
No 267
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=93.90 E-value=0.028 Score=55.73 Aligned_cols=30 Identities=17% Similarity=0.287 Sum_probs=27.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 25 SLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 367889999999999999999999999864
No 268
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=93.89 E-value=0.033 Score=55.21 Aligned_cols=31 Identities=23% Similarity=0.423 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 21 NLDIPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4678899999999999999999999998764
No 269
>PRK12377 putative replication protein; Provisional
Probab=93.89 E-value=0.097 Score=52.90 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.3
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+-+.|+|++|+|||+|+..|++..
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999864
No 270
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.87 E-value=0.11 Score=48.92 Aligned_cols=50 Identities=24% Similarity=0.356 Sum_probs=32.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc-cC----------CCE-EEEEeeCCchhHHHHHHHh
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY-SN----------SDT-VVYVGCGERGNEMAEVLMD 292 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~-~~----------~d~-~V~~~iGeR~~Ev~e~~~~ 292 (516)
.+|+-..|.|++|+|||+++.+|+.. .. ... ++|.-.-....++.+.+..
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~~ 91 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLRA 91 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHHH
Confidence 47999999999999999999877643 21 223 4444444455577777654
No 271
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.027 Score=54.38 Aligned_cols=32 Identities=19% Similarity=0.169 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 27 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred EEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36788999999999999999999999997644
No 272
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=93.86 E-value=0.034 Score=53.32 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 29 ~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 29 SGKAKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3678899999999999999999999999765
No 273
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.85 E-value=0.033 Score=56.81 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~ 58 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLK 58 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999999997754
No 274
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=93.85 E-value=0.034 Score=53.88 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5567899999999999999999999999997654
No 275
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.84 E-value=0.67 Score=41.24 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=19.9
Q ss_pred cccCCCCCCCchHhHHHhhhccC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.|+||+||||++.++++...
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 45789999999999999997654
No 276
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=93.84 E-value=0.033 Score=55.56 Aligned_cols=32 Identities=19% Similarity=0.321 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 25 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999999998754
No 277
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=93.83 E-value=0.029 Score=56.47 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 40 sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 40 DMQFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3688899999999999999999999998764
No 278
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.81 E-value=0.03 Score=55.51 Aligned_cols=31 Identities=23% Similarity=0.408 Sum_probs=27.5
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (250)
T PRK14266 22 VNLDIPKNSVTALIGPSGCGKSTFIRTLNRM 52 (250)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3467889999999999999999999999854
No 279
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=93.80 E-value=0.035 Score=53.11 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=28.7
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 19 LSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345788999999999999999999999987643
No 280
>PRK08181 transposase; Validated
Probab=93.80 E-value=0.061 Score=54.95 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++.+.++|++|+|||.|+..|+++.
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHH
Confidence 478889999999999999999998753
No 281
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=93.79 E-value=0.035 Score=54.80 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=27.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (237)
T TIGR00968 21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLE 50 (237)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 578899999999999999999999998764
No 282
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.031 Score=55.54 Aligned_cols=30 Identities=23% Similarity=0.453 Sum_probs=27.2
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+-+|+.++|.|++|+|||||+..|+.-.
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 25 MDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 568899999999999999999999998753
No 283
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.77 E-value=0.035 Score=55.72 Aligned_cols=32 Identities=19% Similarity=0.263 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 30 s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 30 TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999997654
No 284
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.76 E-value=0.037 Score=54.41 Aligned_cols=33 Identities=21% Similarity=0.418 Sum_probs=29.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 20 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~ 52 (232)
T cd03300 20 SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETP 52 (232)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 367889999999999999999999999987543
No 285
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.73 E-value=0.031 Score=55.50 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=26.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
=+.+.+|+.++|.|++|+|||||+.+|+.
T Consensus 23 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 23 SMEIEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred eEEEeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 46788999999999999999999999985
No 286
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=93.72 E-value=0.037 Score=55.87 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=28.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 31 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347888999999999999999999999987643
No 287
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.72 E-value=0.031 Score=55.95 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=27.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 33 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 33 NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3678899999999999999999999998653
No 288
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=93.72 E-value=0.03 Score=55.54 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 28 LSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 67889999999999999999999999874
No 289
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=93.70 E-value=0.037 Score=54.27 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 42 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 42 SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788999999999999999999999997643
No 290
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.70 E-value=0.15 Score=60.02 Aligned_cols=105 Identities=16% Similarity=0.206 Sum_probs=58.0
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE-EEEeeCCc--hhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV-VYVGCGER--GNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~-V~~~iGeR--~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~ 324 (516)
.+|.|++|+|||+++..+|+...+... -.-.||.- +.++.+.. ... ++..+.++.--.
T Consensus 41 yLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~------------------~~D-viEidAas~~kV 101 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGR------------------FVD-LIEVDAASRTKV 101 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCC------------------Cce-EEEeccccccCH
Confidence 478999999999999999987544211 01133331 22222210 001 122222221112
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH-HHHHHHhhcCCCCCC
Q 010179 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPAD 374 (516)
Q Consensus 325 ~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~-A~reis~~~ge~p~~ 374 (516)
...+-.. .-..|..-.|+..++|+|...++.. |++.+=..+.|||..
T Consensus 102 DdIReLi---e~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~ 149 (944)
T PRK14949 102 DDTRELL---DNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEH 149 (944)
T ss_pred HHHHHHH---HHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCC
Confidence 2222211 1122222368889999999998854 888888888888753
No 291
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=93.69 E-value=0.038 Score=55.17 Aligned_cols=33 Identities=21% Similarity=0.199 Sum_probs=29.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 22 VSLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346888999999999999999999999987643
No 292
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.67 E-value=0.038 Score=55.34 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 24 DLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35678999999999999999999999997654
No 293
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=93.65 E-value=0.58 Score=43.58 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=29.8
Q ss_pred cccCCCCCCCchHhHHHhhhcc-C-CCEEEEEeeCCchhHHHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYS-N-SDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~-~-~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
+++.|++|+|||+++..++... . ..-++++-+.-+..+..+.+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~ 48 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLR 48 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHH
Confidence 5688999999999999887642 2 223566666665555555443
No 294
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.65 E-value=0.039 Score=55.71 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 44 s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 44 SLDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999999997653
No 295
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=93.65 E-value=0.038 Score=55.33 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=26.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.+|+.++|.|++|+|||||+..|+...
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 46689999999999999999999998764
No 296
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=93.65 E-value=0.037 Score=54.42 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=27.6
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 26 LHINQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 678899999999999999999999998764
No 297
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.64 E-value=0.033 Score=55.44 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=26.2
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.+.|+||||+|||||+..|..=
T Consensus 23 l~v~~Gevv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred eeEcCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 57899999999999999999999988653
No 298
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=93.61 E-value=0.2 Score=57.90 Aligned_cols=31 Identities=19% Similarity=0.219 Sum_probs=26.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
-.+..+++.|++|+|||+|+..|++..+..+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~ 240 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYF 240 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeE
Confidence 3456699999999999999999999876653
No 299
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.033 Score=55.66 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 32 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 32 SMQIPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999998753
No 300
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.034 Score=55.17 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=27.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 21 INMQIEQNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3467889999999999999999999999875
No 301
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.61 E-value=0.034 Score=55.21 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=27.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 25 s~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~ 54 (251)
T PRK14244 25 NLDIYKREVTAFIGPSGCGKSTFLRCFNRM 54 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 367889999999999999999999999865
No 302
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.034 Score=55.89 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=27.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 30 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 59 (264)
T PRK14243 30 WLDIPKNQITAFIGPSGCGKSTILRCFNRL 59 (264)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 467889999999999999999999999853
No 303
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.60 E-value=0.035 Score=55.08 Aligned_cols=31 Identities=29% Similarity=0.465 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (252)
T PRK14272 24 NLDVQRGTVNALIGPSGCGKTTFLRAINRMH 54 (252)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3578899999999999999999999999763
No 304
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=93.60 E-value=0.041 Score=53.38 Aligned_cols=31 Identities=29% Similarity=0.359 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 24 SFSIKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4678899999999999999999999998764
No 305
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.035 Score=55.02 Aligned_cols=31 Identities=26% Similarity=0.555 Sum_probs=27.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 24 LPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 6788999999999999999999999987543
No 306
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.59 E-value=0.034 Score=55.29 Aligned_cols=29 Identities=21% Similarity=0.447 Sum_probs=26.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|.|++|+|||||+..|+.-
T Consensus 27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 27 ISIPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred EEECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 67889999999999999999999999864
No 307
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=93.59 E-value=0.039 Score=56.04 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 21 SLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987643
No 308
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.59 E-value=0.033 Score=54.41 Aligned_cols=33 Identities=30% Similarity=0.331 Sum_probs=28.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.-+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 26 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 26 VSLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred ceEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 355788999999999999999999999987643
No 309
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.58 E-value=0.068 Score=56.66 Aligned_cols=44 Identities=23% Similarity=0.351 Sum_probs=37.3
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEE-------eeCCchhHHHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYV-------GCGERGNEMAEVLM 291 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~-------~iGeR~~Ev~e~~~ 291 (516)
+++.||||||||-|+...|++.++-.+=++ .|||..|=|+|+++
T Consensus 188 VLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~ 238 (406)
T COG1222 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFE 238 (406)
T ss_pred eEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHH
Confidence 688999999999999999999988665333 48999998988875
No 310
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.04 Score=54.35 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|++++|.|++|+|||||+..|+....
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36788999999999999999999999987644
No 311
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.034 Score=58.12 Aligned_cols=32 Identities=31% Similarity=0.523 Sum_probs=28.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 34 vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 35678999999999999999999999998764
No 312
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.57 E-value=0.039 Score=55.88 Aligned_cols=33 Identities=21% Similarity=0.278 Sum_probs=29.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347889999999999999999999999987643
No 313
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.56 E-value=0.042 Score=50.55 Aligned_cols=36 Identities=19% Similarity=0.318 Sum_probs=30.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|.-+.+.+|+..+|.|++|+|||||+..|+.....+
T Consensus 17 ~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~ 52 (157)
T cd00267 17 NVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPT 52 (157)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 334678899999999999999999999999865443
No 314
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.55 E-value=0.039 Score=56.42 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=29.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|++++|.|++|+|||||+..|+....
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 4557889999999999999999999999987643
No 315
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.52 E-value=0.036 Score=55.03 Aligned_cols=30 Identities=27% Similarity=0.527 Sum_probs=27.2
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 25 LPIYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 567899999999999999999999999753
No 316
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=93.52 E-value=0.042 Score=55.38 Aligned_cols=34 Identities=29% Similarity=0.351 Sum_probs=29.6
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 31 ~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred eeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 3346788999999999999999999999997753
No 317
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.51 E-value=0.04 Score=55.80 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=28.3
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6888999999999999999999999997643
No 318
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=93.51 E-value=0.036 Score=56.02 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999999999754
No 319
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.49 E-value=0.039 Score=55.12 Aligned_cols=33 Identities=27% Similarity=0.332 Sum_probs=28.5
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+-+|.-+.|.||+|+|||||+..|..--
T Consensus 23 ~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 23 DVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 345689999999999999999999999887543
No 320
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.47 E-value=0.042 Score=54.57 Aligned_cols=32 Identities=28% Similarity=0.416 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+..+|.|++|+|||||+..|+....
T Consensus 24 s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 24 NMDFPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 35688999999999999999999999987644
No 321
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=93.45 E-value=0.4 Score=50.63 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+++.|++|+|||+|+..+++......
T Consensus 159 vLL~GppGtGKT~lakaia~~l~~~~ 184 (364)
T TIGR01242 159 VLLYGPPGTGKTLLAKAVAHETNATF 184 (364)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCE
Confidence 89999999999999999999876653
No 322
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.45 E-value=0.038 Score=54.83 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 24 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 24 SLDFEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 4678899999999999999999999999764
No 323
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.44 E-value=0.037 Score=56.19 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=29.1
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 39 ~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 71 (276)
T PRK14271 39 QVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMN 71 (276)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 445688899999999999999999999998764
No 324
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.44 E-value=0.043 Score=56.20 Aligned_cols=33 Identities=24% Similarity=0.214 Sum_probs=28.9
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 55 ~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~ 87 (282)
T cd03291 55 NINLKIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 344678899999999999999999999998764
No 325
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.43 E-value=0.042 Score=56.10 Aligned_cols=32 Identities=22% Similarity=0.222 Sum_probs=28.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 s~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~ 58 (287)
T PRK13637 27 NIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK 58 (287)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 47888999999999999999999999997643
No 326
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=93.43 E-value=0.042 Score=57.93 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=29.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|+..+|+|++|+|||||+..|+.-...
T Consensus 24 vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p 57 (343)
T TIGR02314 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 57 (343)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3467889999999999999999999999876544
No 327
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=93.43 E-value=0.044 Score=55.53 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=29.2
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|++++|.|++|+|||||+..|+.-.
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 445678999999999999999999999998764
No 328
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=93.42 E-value=0.31 Score=49.18 Aligned_cols=147 Identities=15% Similarity=0.123 Sum_probs=75.3
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCC--CCHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN--MPVA 324 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd--~~~~ 324 (516)
+++++|.+|+|||+|...|.+.....+.-+ -++. .++... . ...-.+.+.|+-|.. ++..
T Consensus 33 ~IllvG~tGvGKSSliNaLlg~~~~~v~~~--~~~T-~~~~~~-~--------------~~~~g~~i~vIDTPGl~~~~~ 94 (249)
T cd01853 33 TILVLGKTGVGKSSTINSIFGERKAATSAF--QSET-LRVREV-S--------------GTVDGFKLNIIDTPGLLESVM 94 (249)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCcccCCC--CCce-EEEEEE-E--------------EEECCeEEEEEECCCcCcchh
Confidence 688999999999999999887532111000 0000 000000 0 000112344444422 1211
Q ss_pred HHHHHHHHHH-HHHHHHHHCCCcEEEEEecchH----HH--HHHHHHHhhcCC----------------CCCCCCCcchh
Q 010179 325 AREASIYTGI-TIAEYFRDMGYNVSMMADSTSR----WA--EALREISGRLAE----------------MPADSGYPAYL 381 (516)
Q Consensus 325 ~r~~a~~~a~-tiAEyfrd~G~~Vlll~Dsltr----~a--~A~reis~~~ge----------------~p~~~gyp~~l 381 (516)
... .-..++ .+.+|+.+.+.|++|+++.+.. +. ++.+.+...+|. +|...-|+|+.
T Consensus 95 ~~~-~~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~ 173 (249)
T cd01853 95 DQR-VNRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFS 173 (249)
T ss_pred hHH-HHHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcch
Confidence 111 111222 3445666678999998876642 33 466666666663 47777788766
Q ss_pred HHH----HHHHHHhhcCcccCCCCCCCCceeEEEEEecCCC
Q 010179 382 AAR----LASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG 418 (516)
Q Consensus 382 ~s~----l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~ 418 (516)
+.+ +..+...|.+.. .+-.-+.++..+++..
T Consensus 174 ~~~~~~~~~~i~~~~~~~~------~~~~~~~~pv~lven~ 208 (249)
T cd01853 174 YDRFVAQRSHIVQQAIQQA------AGDPRLENPVSLVENH 208 (249)
T ss_pred HHHHHHHHHHHHHHHhhhh------ccCccccCCEEEEeCC
Confidence 655 455555555432 2222355677777643
No 329
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=93.42 E-value=0.037 Score=57.99 Aligned_cols=33 Identities=24% Similarity=0.412 Sum_probs=29.6
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-.
T Consensus 39 ~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 39 GVTLRLYEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 446789999999999999999999999998764
No 330
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=93.41 E-value=0.042 Score=58.65 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=28.7
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+.+|+...
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~ 64 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 45788999999999999999999999999754
No 331
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.038 Score=55.78 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=27.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 33 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 62 (269)
T PRK14259 33 FCDIPRGKVTALIGPSGCGKSTVLRSLNRM 62 (269)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 368889999999999999999999999875
No 332
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.39 E-value=0.044 Score=55.67 Aligned_cols=34 Identities=24% Similarity=0.276 Sum_probs=29.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 25 DVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4457889999999999999999999999997643
No 333
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=93.37 E-value=0.043 Score=58.27 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=28.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~ 53 (369)
T PRK11000 22 INLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE 53 (369)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34678899999999999999999999998764
No 334
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.37 E-value=0.15 Score=52.03 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=25.0
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
+-++++||||+|||.|+...|++..+..+
T Consensus 190 rgvllygppg~gktml~kava~~t~a~fi 218 (408)
T KOG0727|consen 190 RGVLLYGPPGTGKTMLAKAVANHTTAAFI 218 (408)
T ss_pred cceEEeCCCCCcHHHHHHHHhhccchhee
Confidence 45789999999999999999999877544
No 335
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=93.34 E-value=0.045 Score=54.59 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=27.8
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred EEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 5678999999999999999999999997643
No 336
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=93.32 E-value=0.048 Score=53.06 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 s~~i~~G~~~~I~G~nGsGKStLl~~l~G~~ 55 (220)
T TIGR02982 25 NLEINPGEIVILTGPSGSGKTTLLTLIGGLR 55 (220)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999999764
No 337
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.31 E-value=0.028 Score=53.58 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=26.7
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccCC-CE-EEEEee
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSNS-DT-VVYVGC 279 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~~-d~-~V~~~i 279 (516)
+.++.+.|.|+.|+|||+|+..+++.... +. ++|...
T Consensus 18 ~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~ 56 (234)
T PF01637_consen 18 GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDF 56 (234)
T ss_dssp --SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCC
T ss_pred hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEec
Confidence 45688999999999999999999887633 22 455544
No 338
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.31 E-value=0.041 Score=55.04 Aligned_cols=31 Identities=29% Similarity=0.433 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~ 57 (259)
T PRK14260 27 SMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57 (259)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3678899999999999999999999999754
No 339
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=93.30 E-value=0.062 Score=52.43 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=27.6
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++-.|+++.|.|++|+|||||+.-||....
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~ 50 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFET 50 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccC
Confidence 4677899999999999999999999998753
No 340
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.29 E-value=0.047 Score=55.36 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=29.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 20 NINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred eeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346788999999999999999999999997643
No 341
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=93.29 E-value=0.13 Score=57.06 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=21.7
Q ss_pred ccccCCCCCCCchHhHHHhhhccCC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.+++.||||+|||+++..+++....
T Consensus 218 GILLyGPPGTGKT~LAKAlA~eL~~ 242 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIAKAVANSLAQ 242 (512)
T ss_pred ceEEECCCCCcHHHHHHHHHHhhcc
Confidence 3899999999999999999987543
No 342
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=93.28 E-value=0.047 Score=54.43 Aligned_cols=30 Identities=23% Similarity=0.488 Sum_probs=27.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 23 LSLPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred eEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 678899999999999999999999998754
No 343
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=93.27 E-value=0.042 Score=55.91 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=29.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+-+|.-.+|.||.|+|||||+..|++-..
T Consensus 21 ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 21 LSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 346788999999999999999999999998644
No 344
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=93.27 E-value=0.042 Score=55.37 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=27.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 39 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3677899999999999999999999998754
No 345
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.26 E-value=0.22 Score=50.94 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=22.0
Q ss_pred ccc-CCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAI-PGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I-~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
..+ .|++|+|||+++..++++...++.
T Consensus 45 ~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 45 MLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred EEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 444 699999999999999988766553
No 346
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.24 E-value=0.041 Score=56.15 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=28.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|.=+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl 88 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAINRM 88 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 34468899999999999999999999999874
No 347
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=93.23 E-value=0.042 Score=54.30 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=27.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 22 LEVRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred eEEcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 56889999999999999999999999886
No 348
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=93.23 E-value=0.58 Score=48.01 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=19.9
Q ss_pred CCccccCCCCCCCchHhHHHhhhc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|-.+.+.|+||||||+++..+++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHH
Confidence 445889999999999999777654
No 349
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.23 E-value=0.19 Score=55.79 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.1
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+-.++.|++|+||||++..+|+..
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999998864
No 350
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=93.23 E-value=0.057 Score=51.38 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.|+.+.|.|++|+|||||+.+|+.....+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCCe
Confidence 36788999999999999999998865443
No 351
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.23 E-value=0.049 Score=56.32 Aligned_cols=34 Identities=26% Similarity=0.340 Sum_probs=29.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
=+.+.+|+.++|.|+.|+|||||+.+|+....++
T Consensus 27 sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~ 60 (306)
T PRK13537 27 SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPD 60 (306)
T ss_pred eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3678899999999999999999999999875443
No 352
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.21 E-value=0.37 Score=47.64 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.3
Q ss_pred CCccccCCCCCCCchHhHHHhhh
Q 010179 245 GGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
|.-..|.|++|+|||+|+.++|.
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~ 23 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLAL 23 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHH
Confidence 44567899999999999998875
No 353
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.17 Score=53.51 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=19.7
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++.||+|+||||++..+|+..
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5799999999999999998764
No 354
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.21 E-value=0.048 Score=56.42 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=29.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 357899999999999999999999999997643
No 355
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=93.21 E-value=0.05 Score=60.13 Aligned_cols=35 Identities=26% Similarity=0.296 Sum_probs=30.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
-+++.+|+|+.|.|.+|+|||||++.|+++-+.+-
T Consensus 358 ~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~ 392 (573)
T COG4987 358 NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQ 392 (573)
T ss_pred ceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCC
Confidence 46899999999999999999999999998755443
No 356
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.20 E-value=0.26 Score=46.87 Aligned_cols=43 Identities=23% Similarity=0.357 Sum_probs=30.4
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCch-hHHHHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERG-NEMAEVL 290 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~-~Ev~e~~ 290 (516)
.++|.|++|+|||+++..++...... ++|...+.-. .|+.+=+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~-~~~iat~~~~~~e~~~ri 46 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQ-VLYIATAQPFDDEMAARI 46 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCC-cEeCcCCCCChHHHHHHH
Confidence 57899999999999999998765433 5666676543 3444433
No 357
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.19 E-value=0.049 Score=55.38 Aligned_cols=32 Identities=28% Similarity=0.323 Sum_probs=28.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+..+|.|++|+|||||+..|+....
T Consensus 27 sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 27 SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36788999999999999999999999997653
No 358
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.18 E-value=0.043 Score=52.49 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=26.6
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+-+|+.++|.|++|+|||||+..|+..
T Consensus 28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 28 GYVKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 57889999999999999999999999863
No 359
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=93.17 E-value=0.039 Score=57.71 Aligned_cols=31 Identities=32% Similarity=0.309 Sum_probs=28.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 36 sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 36 NFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 4688899999999999999999999998754
No 360
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.17 E-value=0.049 Score=55.43 Aligned_cols=32 Identities=28% Similarity=0.312 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 45788999999999999999999999997643
No 361
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=93.16 E-value=0.041 Score=57.42 Aligned_cols=31 Identities=29% Similarity=0.351 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|+|++|+|||||+..|+.-.
T Consensus 27 sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 27 SYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4789999999999999999999999998754
No 362
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.051 Score=52.58 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=30.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+ +.++|.|++|+|||||+..|+....
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 77789999 9999999999999999999987643
No 363
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.049 Score=55.70 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=28.7
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 59 (290)
T PRK13634 28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQP 59 (290)
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence 68889999999999999999999999876543
No 364
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.15 E-value=0.044 Score=55.53 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=27.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 40 s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl 69 (274)
T PRK14265 40 HLKIPAKKIIAFIGPSGCGKSTLLRCFNRM 69 (274)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467889999999999999999999999864
No 365
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=93.15 E-value=0.051 Score=55.18 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=29.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 30 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~ 62 (280)
T PRK13633 30 NLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP 62 (280)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467889999999999999999999999977543
No 366
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.14 E-value=0.044 Score=55.98 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 59 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 89 (285)
T PRK14254 59 SMDIPENQVTAMIGPSGCGKSTFLRCINRMN 89 (285)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3678899999999999999999999998653
No 367
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.14 E-value=0.051 Score=55.10 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=28.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 24 sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 24 NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36888999999999999999999999997643
No 368
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.10 E-value=0.044 Score=55.92 Aligned_cols=60 Identities=25% Similarity=0.461 Sum_probs=44.0
Q ss_pred ccccc-cccccccCCccccCCCCCCCchHhHHHhhhccC--CCEEEEEee-------CCchhHHHHHHHh
Q 010179 233 QRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGC-------GERGNEMAEVLMD 292 (516)
Q Consensus 233 iraID-~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~--~d~~V~~~i-------GeR~~Ev~e~~~~ 292 (516)
++|+| .=+.|.+|..+|++|.+|+|||||..+|.+=.. .+-+.|-+- .++.+.+.|+++.
T Consensus 26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~ 95 (268)
T COG4608 26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEK 95 (268)
T ss_pred eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHH
Confidence 56776 568999999999999999999999999887543 334555532 2344557776664
No 369
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.09 E-value=0.045 Score=54.93 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=28.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+-+|++++|+|++|+|||||+..|+...
T Consensus 34 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 66 (265)
T PRK14252 34 NINMMVHEKQVTALIGPSGCGKSTFLRCFNRMH 66 (265)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 334568899999999999999999999998653
No 370
>PRK08727 hypothetical protein; Validated
Probab=93.08 E-value=0.46 Score=47.17 Aligned_cols=45 Identities=20% Similarity=0.298 Sum_probs=29.1
Q ss_pred ccccCCCCCCCchHhHHHhhhcc-CCC-EEEEEeeCCchhHHHHHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS-NSD-TVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~-~~d-~~V~~~iGeR~~Ev~e~~~ 291 (516)
-+.|.|++|+|||+|+..++++. ..+ .++|.-+.+..+...+.++
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 89 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRLRDALE 89 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhHHHHHH
Confidence 38899999999999999987653 122 2455555443333444443
No 371
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=93.08 E-value=0.051 Score=59.85 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=29.7
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+-+|++++|.|++|+|||||+..|.+..+.
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p 387 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDP 387 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3568899999999999999999999999876543
No 372
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.06 E-value=0.21 Score=55.32 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=34.0
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCEEEE-------EeeCCchhHHHHHHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVY-------VGCGERGNEMAEVLM 291 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~-------~~iGeR~~Ev~e~~~ 291 (516)
-+++.||+|||||.++..||+..+.....+ ..+|+....+.++++
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~ 312 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIR 312 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHH
Confidence 388999999999999999999876543222 246777777777765
No 373
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=93.05 E-value=0.053 Score=57.03 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=29.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|+.|+|||||+.+|+.....
T Consensus 61 s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p 93 (340)
T PRK13536 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93 (340)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCC
Confidence 368899999999999999999999999876543
No 374
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.05 E-value=0.066 Score=54.74 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=34.7
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCEE-EEE--eeCCchhHHHHHHHhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDTV-VYV--GCGERGNEMAEVLMDF 293 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~~-V~~--~iGeR~~Ev~e~~~~~ 293 (516)
.++++||+|+|||.++..+|+.++.... |=+ +|||.--+..+-++++
T Consensus 153 nVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihel 202 (368)
T COG1223 153 NVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHEL 202 (368)
T ss_pred eeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHH
Confidence 5789999999999999999998766542 333 6777666666655553
No 375
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.05 E-value=0.051 Score=55.88 Aligned_cols=32 Identities=22% Similarity=0.366 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|+.|+|||||+.+|+.-..
T Consensus 22 s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36788999999999999999999999987543
No 376
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=93.03 E-value=0.048 Score=55.12 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=27.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 45 s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~ 75 (272)
T PRK14236 45 SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN 75 (272)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3678899999999999999999999998763
No 377
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=93.02 E-value=0.057 Score=56.93 Aligned_cols=34 Identities=32% Similarity=0.371 Sum_probs=30.5
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|+|++|+|||||+..|+....
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~ 48 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR 48 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6668899999999999999999999999987653
No 378
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=93.00 E-value=0.053 Score=61.65 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=29.6
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|++++|+|+.|+|||||+..|+....
T Consensus 19 ~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~ 52 (638)
T PRK10636 19 NATATINPGQKVGLVGKNGCGKSTLLALLKNEIS 52 (638)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3346889999999999999999999999998643
No 379
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=93.00 E-value=0.054 Score=57.53 Aligned_cols=32 Identities=28% Similarity=0.461 Sum_probs=28.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+.+|+...
T Consensus 24 vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 55 (362)
T TIGR03258 24 LSLEIEAGELLALIGKSGCGKTTLLRAIAGFV 55 (362)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999999754
No 380
>PRK06921 hypothetical protein; Provisional
Probab=92.99 E-value=0.11 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=23.2
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.-+.++|++|+|||+|+..|++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 46779999999999999999999864
No 381
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=92.96 E-value=0.28 Score=48.85 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=18.2
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.++|.|++|+||||++..++.
T Consensus 14 ~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 14 MYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEEECCCCCCHHHHHHhcCC
Confidence 367999999999999998863
No 382
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=92.95 E-value=0.055 Score=56.85 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 25 sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46788999999999999999999999997654
No 383
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=92.94 E-value=0.047 Score=53.27 Aligned_cols=31 Identities=32% Similarity=0.396 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++-+||+++|+|..|+|||||+.||+.-.
T Consensus 33 SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi 63 (267)
T COG4167 33 SFTLREGQTLAIIGENGSGKSTLAKMLAGMI 63 (267)
T ss_pred EEEecCCcEEEEEccCCCcHhHHHHHHhccc
Confidence 3689999999999999999999999998653
No 384
>PRK14974 cell division protein FtsY; Provisional
Probab=92.94 E-value=0.33 Score=51.26 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.4
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++..+++.|++|+||||++..+|.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~ 163 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYY 163 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 45678999999999999999888765
No 385
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.91 E-value=0.05 Score=56.13 Aligned_cols=32 Identities=22% Similarity=0.383 Sum_probs=28.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 64 is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 64 VSMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34678899999999999999999999998653
No 386
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=92.90 E-value=0.056 Score=57.71 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=28.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|+|++|+|||||+.+|+.-..
T Consensus 38 vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346788999999999999999999999997643
No 387
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.84 E-value=0.24 Score=46.95 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=20.8
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+..++.|++|+|||+++..+++..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 557899999999999999888763
No 388
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.054 Score=60.74 Aligned_cols=73 Identities=22% Similarity=0.414 Sum_probs=55.2
Q ss_pred eeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEE----
Q 010179 202 KKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV---- 277 (516)
Q Consensus 202 ~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~---- 277 (516)
..++.|.--||++.|- .++++.++. .+| ++++||||||||-|+..+||.+.++.+-+=
T Consensus 520 R~eL~~aI~~PiK~pd-~~k~lGi~~--PsG---------------vLL~GPPGCGKTLlAKAVANEag~NFisVKGPEL 581 (802)
T KOG0733|consen 520 RLELNMAILAPIKRPD-LFKALGIDA--PSG---------------VLLCGPPGCGKTLLAKAVANEAGANFISVKGPEL 581 (802)
T ss_pred HHHHHHHHhhhccCHH-HHHHhCCCC--CCc---------------eEEeCCCCccHHHHHHHHhhhccCceEeecCHHH
Confidence 5788999999998753 356666555 344 589999999999999999998877654322
Q ss_pred ---eeCCchhHHHHHHHh
Q 010179 278 ---GCGERGNEMAEVLMD 292 (516)
Q Consensus 278 ---~iGeR~~Ev~e~~~~ 292 (516)
.+||.-|-|+.++..
T Consensus 582 lNkYVGESErAVR~vFqR 599 (802)
T KOG0733|consen 582 LNKYVGESERAVRQVFQR 599 (802)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 378888888887753
No 389
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=92.82 E-value=0.64 Score=49.01 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=28.1
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccC---CCE-EEEEeeCC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSN---SDT-VVYVGCGE 281 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~---~d~-~V~~~iGe 281 (516)
++++.+.|.|++|+|||+++..++++.. .++ ++|+-|-+
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~ 95 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQI 95 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCc
Confidence 3456789999999999999998886531 123 56665544
No 390
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.82 E-value=0.053 Score=54.39 Aligned_cols=32 Identities=25% Similarity=0.425 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+.-..
T Consensus 27 s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 27 SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 36788999999999999999999999997643
No 391
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=92.78 E-value=0.054 Score=55.29 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=27.7
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.|-+|++++|+|++|+|||||+.+|++..
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~ 54 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLL 54 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 689999999999999999999999998764
No 392
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=92.74 E-value=0.36 Score=50.55 Aligned_cols=90 Identities=17% Similarity=0.084 Sum_probs=55.4
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHH
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVA 324 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~ 324 (516)
++++.|.|++|+|||||+..|++..+..+ +-|.+||..+-.. .+...+ +.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~-----v~E~~R~~~~~~~------------~~~~~l-------------~~ 211 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTS-----AWEYAREYVEEKL------------GGDEAL-------------QY 211 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCE-----EeehhHHHHHHhc------------CCCccc-------------CH
Confidence 78999999999999999999998755543 4455555433110 011111 11
Q ss_pred HHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHH
Q 010179 325 AREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREI 364 (516)
Q Consensus 325 ~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~rei 364 (516)
..+.-...+...+++.+-+..+-++++|--..-..++.+.
T Consensus 212 ~d~~~i~~g~~~~~~~~~~~a~~iif~D~~~~~t~~y~~~ 251 (325)
T TIGR01526 212 SDYAQIALGQQRYIDYAVRHAHKIAFIDTDFITTQVFAKQ 251 (325)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEEcCChHHHHHHHHH
Confidence 1244444555555555555567789999766666666664
No 393
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=92.74 E-value=0.059 Score=61.15 Aligned_cols=34 Identities=18% Similarity=0.121 Sum_probs=29.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|++++|+|+.|+|||||+..|+.....
T Consensus 22 is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p 55 (635)
T PRK11147 22 AELHIEDNERVCLVGRNGAGKSTLMKILNGEVLL 55 (635)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 3567889999999999999999999999987543
No 394
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=92.72 E-value=0.076 Score=52.53 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=30.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.-+..-+|+=.||+|+.|+||||++.||+.-..+
T Consensus 20 dVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P 54 (245)
T COG4555 20 DVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIP 54 (245)
T ss_pred heeEEeccceEEEEEcCCCCCchhHHHHHHHhccC
Confidence 66788899999999999999999999999976443
No 395
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.72 E-value=0.18 Score=57.26 Aligned_cols=129 Identities=21% Similarity=0.205 Sum_probs=64.1
Q ss_pred cccCCCCCCCchHhHHHhhhccCCC------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSD------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d------~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~ 321 (516)
.++.|++|+||||++..+|+...+. -.-.--||+- +.-+++ +. +.. . ..+.+-+.++.
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C-~~C~~i-~~----------g~h---~-D~~eldaas~~ 104 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC-QACRDI-DS----------GRF---V-DYTELDAASNR 104 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc-HHHHHH-Hc----------CCC---C-ceeecCccccc
Confidence 4789999999999999998764321 0111235542 222222 11 000 0 11112122222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHH-HHHHHHhhcCCCCCCCCCc---chhHHHHHHHHHhhcCcc
Q 010179 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAE-ALREISGRLAEMPADSGYP---AYLAARLASFYERAGKVK 396 (516)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~-A~reis~~~ge~p~~~gyp---~~l~s~l~~l~ERag~~~ 396 (516)
.. ...+. -+.-+.|---.|+.-++++|...++.. +++.+-..+.|||..--|= .+....+..+..|+-.++
T Consensus 105 ~V-d~iRe---li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~ 179 (618)
T PRK14951 105 GV-DEVQQ---LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFN 179 (618)
T ss_pred CH-HHHHH---HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeee
Confidence 22 12221 122233333457667788888887765 7777777888877532110 011122445666666553
No 396
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=92.71 E-value=0.054 Score=53.95 Aligned_cols=33 Identities=15% Similarity=0.161 Sum_probs=28.5
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 14 ~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~ 46 (248)
T PRK03695 14 PLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL 46 (248)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 334678899999999999999999999998653
No 397
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=92.70 E-value=0.065 Score=53.62 Aligned_cols=30 Identities=27% Similarity=0.259 Sum_probs=27.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (257)
T cd03288 42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMV 71 (257)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 678899999999999999999999998763
No 398
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.70 E-value=0.056 Score=54.41 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=27.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 28 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (261)
T PRK14263 28 HVPIRKNEITGFIGPSGCGKSTVLRSLNRMN 58 (261)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence 4678899999999999999999999998653
No 399
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=92.69 E-value=0.061 Score=57.24 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=29.7
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|+.++|.|++|+|||||+.+|+.....
T Consensus 12 vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p 45 (363)
T TIGR01186 12 ADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEP 45 (363)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCC
Confidence 3467889999999999999999999999987543
No 400
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.69 E-value=0.068 Score=52.72 Aligned_cols=34 Identities=24% Similarity=0.476 Sum_probs=29.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.-+.|..|+.+.+.|++|||||||++-+|....
T Consensus 23 ~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~ 56 (259)
T COG4525 23 DVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT 56 (259)
T ss_pred ccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC
Confidence 3445789999999999999999999999887643
No 401
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=92.63 E-value=0.23 Score=49.58 Aligned_cols=42 Identities=24% Similarity=0.302 Sum_probs=30.6
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc----cCCCEEEEEeeCCchh
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY----SNSDTVVYVGCGERGN 284 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~----~~~d~~V~~~iGeR~~ 284 (516)
...+.++|.|.+|+|||+|+.++++. .+-|.++++-++....
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~ 62 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPS 62 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SC
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccc
Confidence 34566899999999999999998865 2336677776666543
No 402
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.63 E-value=0.066 Score=54.31 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=28.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 27 ~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 27 SFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36788999999999999999999999987643
No 403
>PRK06893 DNA replication initiation factor; Validated
Probab=92.62 E-value=0.25 Score=48.85 Aligned_cols=21 Identities=29% Similarity=0.268 Sum_probs=19.4
Q ss_pred cccCCCCCCCchHhHHHhhhc
Q 010179 248 CAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.++|++|+|||+|+..|++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999875
No 404
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.55 E-value=0.069 Score=54.38 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=29.5
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 24 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~ 57 (283)
T PRK13636 24 GININIKKGEVTAILGGNGAGKSTLFQNLNGILK 57 (283)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3346788999999999999999999999997753
No 405
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.54 E-value=0.061 Score=52.05 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=26.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+-+-+|++++|+|++|+|||||+.-+|.--
T Consensus 31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd 60 (228)
T COG4181 31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLD 60 (228)
T ss_pred EEecCCceEEEEcCCCCcHHhHHHHHhcCC
Confidence 457899999999999999999999888643
No 406
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=92.50 E-value=0.066 Score=58.84 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.4
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 23 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 54 (501)
T PRK10762 23 AALNVYPGRVMALVGENGAGKSTMMKVLTGIY 54 (501)
T ss_pred eeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998764
No 407
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=92.41 E-value=0.073 Score=55.49 Aligned_cols=30 Identities=17% Similarity=0.204 Sum_probs=27.8
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|++|+|||||+..|+.-.
T Consensus 47 l~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~ 76 (320)
T PRK13631 47 YTFEKNKIYFIIGNSGSGKSTLVTHFNGLI 76 (320)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 788899999999999999999999999764
No 408
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.35 E-value=0.076 Score=53.60 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=29.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
=+.+-||.-.+|.||+|+|||||+..|......+
T Consensus 28 ~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~ 61 (263)
T COG1127 28 DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPD 61 (263)
T ss_pred eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCC
Confidence 3578899999999999999999999998876544
No 409
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=92.35 E-value=0.075 Score=58.81 Aligned_cols=32 Identities=25% Similarity=0.284 Sum_probs=28.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|++++|.|++|+|||||+..|+...
T Consensus 20 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 51 (530)
T PRK15064 20 ISVKFGGGNRYGLIGANGCGKSTFMKILGGDL 51 (530)
T ss_pred CEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34688999999999999999999999998754
No 410
>CHL00181 cbbX CbbX; Provisional
Probab=92.34 E-value=0.93 Score=46.66 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+|-.+.+.|+||||||+++..+++.
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHH
Confidence 34666889999999999999998764
No 411
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=92.31 E-value=0.066 Score=56.07 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 102 s~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 102 NLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4678899999999999999999999998764
No 412
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.28 E-value=0.3 Score=55.78 Aligned_cols=128 Identities=20% Similarity=0.188 Sum_probs=65.1
Q ss_pred cccCCCCCCCchHhHHHhhhccCCC-----E-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSD-----T-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNM 321 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d-----~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~ 321 (516)
.++.|++|+||||++..+++....+ . .-.--||+ ++.-.++-. +-....+-+-+.++.
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~-C~sC~~I~a---------------G~hpDviEIdAas~~ 104 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ-CRACTEIDA---------------GRFVDYIEMDAASNR 104 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc-cHHHHHHHc---------------CCCCcceEecccccC
Confidence 5789999999999999999865331 0 11123554 222222211 001111222222222
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHH-HHHHHHHhhcCCCCCCCCCcc---hhHHHHHHHHHhhcCc
Q 010179 322 PVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA-EALREISGRLAEMPADSGYPA---YLAARLASFYERAGKV 395 (516)
Q Consensus 322 ~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a-~A~reis~~~ge~p~~~gyp~---~l~s~l~~l~ERag~~ 395 (516)
. ....+... .-..|-...|+.-++|+|...++. .|++.+=..+.|+|..--|=- +...-++-+.-|+-.+
T Consensus 105 g-VDdIReLi---e~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f 178 (700)
T PRK12323 105 G-VDEMAQLL---DKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQF 178 (700)
T ss_pred C-HHHHHHHH---HHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhc
Confidence 2 22222211 112222235777778888887774 577888888888875422110 2222344556666555
No 413
>PLN03073 ABC transporter F family; Provisional
Probab=92.27 E-value=0.064 Score=61.93 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=28.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
|.=+.|..|.|+||+|+.|+|||||+.+|+.
T Consensus 195 ~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g 225 (718)
T PLN03073 195 DASVTLAFGRHYGLVGRNGTGKTTFLRYMAM 225 (718)
T ss_pred CCEEEECCCCEEEEECCCCCCHHHHHHHHcC
Confidence 4467899999999999999999999999986
No 414
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=92.21 E-value=0.079 Score=59.02 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=29.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+-+||+++|.|++|+|||||+..|++..+.
T Consensus 361 ~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 361 NINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred CceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 33467789999999999999999999999987543
No 415
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=92.20 E-value=0.08 Score=59.08 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=28.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+..|++++|.|++|+|||||+..|+...
T Consensus 26 vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~ 57 (556)
T PRK11819 26 ISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 57 (556)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34689999999999999999999999999764
No 416
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=92.19 E-value=0.61 Score=50.98 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=22.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+++.|++|+|||+|+..+|+......
T Consensus 220 VLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 220 VILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 78999999999999999999876543
No 417
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=92.18 E-value=0.073 Score=57.35 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=31.7
Q ss_pred ccccccc-cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 233 QRVLDAL-FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 233 iraID~l-~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++++|.+ +++.+||++||+|.+|+|||||-.+|.+-.
T Consensus 300 ~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~ 337 (534)
T COG4172 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI 337 (534)
T ss_pred eEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc
Confidence 5677654 789999999999999999999999887643
No 418
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.16 E-value=0.36 Score=49.37 Aligned_cols=148 Identities=21% Similarity=0.257 Sum_probs=76.6
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhccCCC-EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEE
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d-~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtv 313 (516)
.+|.++ -.|+-+++.|++|+|||+++....+..+.+ ..+....=...-... .+.++-+ ..+-+|+=
T Consensus 25 ll~~l~--~~~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~-~~q~~ie----------~~l~k~~~ 91 (272)
T PF12775_consen 25 LLDLLL--SNGRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSN-QLQKIIE----------SKLEKRRG 91 (272)
T ss_dssp HHHHHH--HCTEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHH-HHHHCCC----------TTECECTT
T ss_pred HHHHHH--HcCCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHH-HHHHHHh----------hcEEcCCC
Confidence 344453 357789999999999999998765554433 232222222222222 2333211 11111111
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcc-hhHHHHHHHHHhh
Q 010179 314 LVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLAARLASFYERA 392 (516)
Q Consensus 314 vv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~-~l~s~l~~l~ERa 392 (516)
-+..+ ..|++.++++||+. +|..+.|-. -...-|..+++.-
T Consensus 92 ~~~gP-----------------------~~~k~lv~fiDDlN---------------~p~~d~ygtq~~iElLRQ~i~~~ 133 (272)
T PF12775_consen 92 RVYGP-----------------------PGGKKLVLFIDDLN---------------MPQPDKYGTQPPIELLRQLIDYG 133 (272)
T ss_dssp EEEEE-----------------------ESSSEEEEEEETTT----------------S---TTS--HHHHHHHHHHHCS
T ss_pred CCCCC-----------------------CCCcEEEEEecccC---------------CCCCCCCCCcCHHHHHHHHHHhc
Confidence 11111 24899999999997 566666543 2357789999988
Q ss_pred cCcccCC-CCCCCCceeEEEEEecCCCCCCchhhHhhhccccEE
Q 010179 393 GKVKCLG-GPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVF 435 (516)
Q Consensus 393 g~~~~~~-~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ 435 (516)
|-...-. .-..---|+.+++..+.+|. .+++.-..+++...
T Consensus 134 g~yd~~~~~~~~i~~i~~vaa~~p~~Gr--~~is~R~~r~f~i~ 175 (272)
T PF12775_consen 134 GFYDRKKLEWKSIEDIQFVAAMNPTGGR--NPISPRFLRHFNIL 175 (272)
T ss_dssp EEECTTTTEEEEECSEEEEEEESSTTT----SHHHHHHTTEEEE
T ss_pred CcccCCCcEEEEEeeeEEEEecCCCCCC--CCCChHHhhheEEE
Confidence 8653100 00011346777777665553 45665555554433
No 419
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=92.15 E-value=0.069 Score=58.87 Aligned_cols=31 Identities=29% Similarity=0.371 Sum_probs=28.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.=+.+.+|++++|+|++|+|||||+..|+..
T Consensus 19 is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl 49 (520)
T TIGR03269 19 ISFTIEEGEVLGILGRSGAGKSVLMHVLRGM 49 (520)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 4467889999999999999999999999986
No 420
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=92.12 E-value=0.13 Score=51.54 Aligned_cols=60 Identities=27% Similarity=0.323 Sum_probs=42.0
Q ss_pred cccccccccccc-ccccCCccccCCCCCCCchHhHHHhhhcc--CCCE-EEEEeeCCchhHHHH
Q 010179 229 LLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDT-VVYVGCGERGNEMAE 288 (516)
Q Consensus 229 l~TGiraID~l~-pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~-~V~~~iGeR~~Ev~e 288 (516)
+.||++.+|-++ -+.+|+=..|-|.||+|||+++.+||.+. ..+. ++|.-.....+|+..
T Consensus 2 i~TG~~~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~ 65 (259)
T PF03796_consen 2 IPTGFPALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAA 65 (259)
T ss_dssp B-SSTHHHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHH
T ss_pred CCCChHHHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHH
Confidence 469999999887 57788889999999999999999988763 2224 455555545555544
No 421
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=92.09 E-value=0.08 Score=57.88 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 23 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~ 53 (490)
T PRK10938 23 SLTLNAGDSWAFVGANGSGKSALARALAGEL 53 (490)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4788999999999999999999999998754
No 422
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.07 E-value=0.38 Score=45.04 Aligned_cols=29 Identities=34% Similarity=0.293 Sum_probs=24.9
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.-+|.-+.+.|.+|+||||++..+++..
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l 31 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERL 31 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45577889999999999999999998764
No 423
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=92.05 E-value=0.14 Score=55.21 Aligned_cols=62 Identities=18% Similarity=0.184 Sum_probs=48.0
Q ss_pred ccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhcc--CCCE-EEEEeeCCchhHHHH
Q 010179 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDT-VVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~-~V~~~iGeR~~Ev~e 288 (516)
.-+.||++.+|-++- +.+|+-+.|-|+||+|||+++.+++.+. ..+. ++|.-.-+...++.+
T Consensus 176 ~gi~tG~~~LD~~~~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~~i~~ 241 (434)
T TIGR00665 176 TGVPTGFTDLDKLTSGLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAEQLAM 241 (434)
T ss_pred CcccCCchhhHhhcCCCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHHHHHH
Confidence 347899999999874 7799999999999999999999887652 2233 556666666666654
No 424
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.03 E-value=0.32 Score=55.87 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++.|++|+|||+++..+++..
T Consensus 40 a~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 40 AYLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEEECCCCCcHHHHHHHHHHHh
Confidence 46899999999999999999864
No 425
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=91.98 E-value=0.082 Score=57.00 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|+|++|+|||||+.+|+...
T Consensus 23 s~~i~~Geiv~liGpNGaGKSTLLk~LaGll 53 (402)
T PRK09536 23 DLSVREGSLVGLVGPNGAGKTTLLRAINGTL 53 (402)
T ss_pred EEEECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 3678899999999999999999999998764
No 426
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.95 E-value=0.06 Score=46.69 Aligned_cols=22 Identities=36% Similarity=0.513 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++|.|.+|+|||||+..|++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4789999999999999999865
No 427
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.93 E-value=0.29 Score=55.20 Aligned_cols=135 Identities=20% Similarity=0.204 Sum_probs=85.3
Q ss_pred cccCCCCCCCchHhHHHhhhccCCC-------EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSD-------TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 320 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d-------~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd 320 (516)
+++-||||||||.|++.||+..... -+|=..-||.-.-++|++++ +....-|+||.---|
T Consensus 226 vLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~-------------A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 226 VLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQ-------------AKSNAPCIVFIDEID 292 (802)
T ss_pred eeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHH-------------HhccCCeEEEeeccc
Confidence 6889999999999999999986432 24555679988889998875 122456777765443
Q ss_pred CCH---------HHHHHHHHHHHHHHHHHHH--CCCcEEEEE-----ecc----hHHHHHHHHHHhh-------------
Q 010179 321 MPV---------AAREASIYTGITIAEYFRD--MGYNVSMMA-----DST----SRWAEALREISGR------------- 367 (516)
Q Consensus 321 ~~~---------~~r~~a~~~a~tiAEyfrd--~G~~Vlll~-----Dsl----tr~a~A~reis~~------------- 367 (516)
.=. .+|..++-..+.+-|--+. .|+.||+|- ||+ -|-.+--|||.+-
T Consensus 293 AI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~ 372 (802)
T KOG0733|consen 293 AITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRI 372 (802)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHH
Confidence 222 4455555555556555443 589999885 444 2333333444321
Q ss_pred ----cCCCC------CCCCCcchhHHHHHHHHHhhcCc
Q 010179 368 ----LAEMP------ADSGYPAYLAARLASFYERAGKV 395 (516)
Q Consensus 368 ----~ge~p------~~~gyp~~l~s~l~~l~ERag~~ 395 (516)
+.-.+ -.+--||++.++|..|.-+|+.+
T Consensus 373 ~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~v 410 (802)
T KOG0733|consen 373 ICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFV 410 (802)
T ss_pred HHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHH
Confidence 11111 01235778889998888888764
No 428
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=91.93 E-value=0.8 Score=42.20 Aligned_cols=22 Identities=32% Similarity=0.440 Sum_probs=19.1
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.|.|.+|+|||||+..|+...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 4678999999999999998764
No 429
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=91.90 E-value=0.12 Score=53.19 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
=+.+.+|+-.|+.|+.|+|||||+.+|+....++
T Consensus 25 s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~ 58 (293)
T COG1131 25 SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPT 58 (293)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCC
Confidence 4688999999999999999999999999876554
No 430
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.89 E-value=0.29 Score=54.64 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.1
Q ss_pred cccCCCCCCCchHhHHHhhhccC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.++.|++|+|||+++..+|+...
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57899999999999999988653
No 431
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=91.87 E-value=0.089 Score=59.85 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=28.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|++++|.|+.|+|||||+..|+...
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 362 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL 362 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44688999999999999999999999998764
No 432
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.87 E-value=0.088 Score=57.91 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=29.3
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+.+|+....
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 314 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK 314 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 456889999999999999999999999997643
No 433
>PRK14530 adenylate kinase; Provisional
Probab=91.85 E-value=0.095 Score=51.03 Aligned_cols=27 Identities=26% Similarity=0.196 Sum_probs=23.6
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.|-++.|+|+||+||||++..|++..+
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999998764
No 434
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=91.85 E-value=0.098 Score=49.70 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
-++|.+|.-+-+.||+|+|||||+.-|+.....+.
T Consensus 22 n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F 56 (213)
T COG4136 22 NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQF 56 (213)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHhhcccCc
Confidence 46899999999999999999999997777655543
No 435
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=91.81 E-value=0.093 Score=58.09 Aligned_cols=32 Identities=28% Similarity=0.215 Sum_probs=28.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.-+.+.+|++++|.|++|+|||||+..|+...
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~ 369 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLRTLVGEL 369 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45788999999999999999999999998764
No 436
>PRK08116 hypothetical protein; Validated
Probab=91.75 E-value=0.36 Score=49.14 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.0
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.|.|++|+|||.|+..|++..
T Consensus 117 l~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999998863
No 437
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.72 E-value=0.084 Score=53.87 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=30.7
Q ss_pred cccc-cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 234 RVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 234 raID-~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+++| .-++|-.|.-+.+.|+||+||||++.||-+=...
T Consensus 15 ~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 15 KAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred eeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCC
Confidence 4443 4578999999999999999999999998765433
No 438
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.70 E-value=0.11 Score=51.07 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=39.4
Q ss_pred ccccc-cccCCccccCCCCCCCchHhHHHhhhcc--C-CCEEEEEeeCCchhHHHHH
Q 010179 237 DALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAEV 289 (516)
Q Consensus 237 D~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~-~d~~V~~~iGeR~~Ev~e~ 289 (516)
|-++. +.+|+-+.|.|+||+|||+++.+++.+. . ..-++|.-.-+..+++.+-
T Consensus 4 D~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 4 DNLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred hhhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHH
Confidence 44433 5789999999999999999999877553 2 2346777777777777763
No 439
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.70 E-value=0.34 Score=53.85 Aligned_cols=22 Identities=41% Similarity=0.530 Sum_probs=19.6
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++.|++|+|||+++..+|+..
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5788999999999999999864
No 440
>PRK08233 hypothetical protein; Provisional
Probab=91.66 E-value=0.13 Score=47.80 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.8
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.-++|.|++|+|||||+..|+...
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l 27 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKL 27 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhC
Confidence 4557899999999999999999765
No 441
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=91.66 E-value=0.079 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|+.|+|+||+||||++..|++.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999986
No 442
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=91.65 E-value=0.075 Score=51.42 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.9
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|..++|.|++|+|||||+..|+...
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l 30 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQL 30 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998754
No 443
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.64 E-value=0.58 Score=48.96 Aligned_cols=27 Identities=22% Similarity=0.111 Sum_probs=24.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+|+.+++.|++|+||||++..||...
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 578999999999999999999888653
No 444
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=0.39 Score=51.54 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.9
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++.||+|+|||+++..+|+..
T Consensus 41 ~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 41 YIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999888753
No 445
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.62 E-value=0.09 Score=50.29 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
-+|+.++|.|++|+|||||+..|++...
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3788999999999999999999988654
No 446
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=91.62 E-value=0.095 Score=57.68 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=28.7
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 23 ~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 55 (510)
T PRK09700 23 SVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH 55 (510)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence 345678899999999999999999999998754
No 447
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=91.60 E-value=0.088 Score=49.23 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.5
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.++|.|++|+|||||+..|++..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccC
Confidence 6778999999999999999999854
No 448
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.59 E-value=0.18 Score=57.40 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=26.4
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..++...|+.++|.|++|+||||++..+++..
T Consensus 103 ~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 103 QVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455667779999999999999999998754
No 449
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.59 E-value=0.098 Score=46.87 Aligned_cols=42 Identities=17% Similarity=0.346 Sum_probs=28.3
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
+.+.|++|+|||+|+..+++..+..+..+ -+ -...+..+++-
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i-~~-~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRI-NC-SSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEE-E--TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEE-Ee-cccccccccee
Confidence 56899999999999999998874443332 33 33344456654
No 450
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=91.55 E-value=0.086 Score=45.41 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.++|++|+|||+|+..++...
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEECcCCCCHHHHHHHHhcCC
Confidence 67899999999999999988754
No 451
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.54 E-value=0.14 Score=49.53 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=24.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++..++|.|++|+|||||+..|++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998865
No 452
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.54 E-value=0.6 Score=50.31 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=21.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
..+-.++.||+|+|||+++..+|+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~ 59 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAA 59 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3566889999999999999998875
No 453
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=91.52 E-value=0.1 Score=58.22 Aligned_cols=34 Identities=18% Similarity=0.242 Sum_probs=29.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.-+.+-.|.|+|++|..|+|||||+..|+....
T Consensus 21 ~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~ 54 (530)
T COG0488 21 NVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE 54 (530)
T ss_pred CCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc
Confidence 4467889999999999999999999999997653
No 454
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.51 E-value=0.088 Score=57.73 Aligned_cols=32 Identities=22% Similarity=0.241 Sum_probs=28.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 20 isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~ 51 (500)
T TIGR02633 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVY 51 (500)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998654
No 455
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=91.50 E-value=0.1 Score=59.23 Aligned_cols=33 Identities=36% Similarity=0.421 Sum_probs=29.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|+.++|.|++|+|||||+.+|+...
T Consensus 34 ~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll 66 (623)
T PRK10261 34 NLSFSLQRGETLAIVGESGSGKSVTALALMRLL 66 (623)
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 345788899999999999999999999999764
No 456
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.49 E-value=0.098 Score=56.39 Aligned_cols=32 Identities=22% Similarity=0.303 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 48 sl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~ 79 (400)
T PRK10070 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE 79 (400)
T ss_pred EEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 45788999999999999999999999997653
No 457
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.46 E-value=0.09 Score=49.29 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=22.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhccC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|+.+.|.|++|+|||||+..|+....
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56788999999999999999987643
No 458
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=91.45 E-value=0.11 Score=57.95 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=29.2
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+.+|++++|.|+.|+|||||+..|+.-.
T Consensus 23 ~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~ 55 (552)
T TIGR03719 23 DISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD 55 (552)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334789999999999999999999999998764
No 459
>PRK09183 transposase/IS protein; Provisional
Probab=91.45 E-value=0.081 Score=53.55 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=24.9
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+|+.+.|+|++|+|||+|+..|++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 788999999999999999999988765
No 460
>PRK06217 hypothetical protein; Validated
Probab=91.44 E-value=0.11 Score=49.16 Aligned_cols=25 Identities=32% Similarity=0.409 Sum_probs=22.0
Q ss_pred CccccCCCCCCCchHhHHHhhhccC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.|+.|.|.+|+|||||+.+|++..+
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~ 26 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD 26 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999997653
No 461
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=91.41 E-value=0.092 Score=58.10 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=28.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+.+|+.++|+|++|+|||||+..|+...
T Consensus 28 isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~ 59 (529)
T PRK15134 28 VSLQIEAGETLALVGESGSGKSVTALSILRLL 59 (529)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34678899999999999999999999988654
No 462
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=91.40 E-value=0.11 Score=59.62 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=29.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+|++++|.|++|+|||||+..|++..+
T Consensus 492 ~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 492 DISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3347899999999999999999999999987643
No 463
>PRK14531 adenylate kinase; Provisional
Probab=91.40 E-value=0.11 Score=49.33 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.9
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|+.|+|+||+||||++..|++..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999999865
No 464
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=91.39 E-value=0.21 Score=52.11 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=21.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++++.+.|.|++|+|||+++..++++
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~ 63 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKE 63 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHH
Confidence 34567899999999999999988764
No 465
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=91.38 E-value=0.11 Score=57.25 Aligned_cols=33 Identities=24% Similarity=0.396 Sum_probs=29.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|++++|.|++|+|||||+..|++..+.
T Consensus 342 ~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~ 374 (529)
T TIGR02857 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDP 374 (529)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 467889999999999999999999999986543
No 466
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=91.38 E-value=0.15 Score=56.85 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=35.6
Q ss_pred cccccc-ccccccCCccccCCCCCCCchHhHHHhhhccCC--CEEEEE
Q 010179 233 QRVLDA-LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS--DTVVYV 277 (516)
Q Consensus 233 iraID~-l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~--d~~V~~ 277 (516)
++++|. =+-+-+|+.++|+|.+|+|||||+..|++-..+ +.++|.
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~ 351 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFD 351 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEe
Confidence 566654 478899999999999999999999999986544 334443
No 467
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.37 E-value=0.096 Score=52.52 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.-+.+.+|++++|.|++|+|||||+.+++.=.
T Consensus 22 ~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 22 DVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 556789999999999999999999999887543
No 468
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=91.37 E-value=0.089 Score=57.89 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=27.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (506)
T PRK13549 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGVY 55 (506)
T ss_pred eEEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999998654
No 469
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=91.36 E-value=0.11 Score=58.17 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=29.9
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+-+||+++|.|++|+|||||+..|++...
T Consensus 359 ~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~ 392 (592)
T PRK10790 359 NINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP 392 (592)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 4457899999999999999999999999987643
No 470
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=91.35 E-value=0.11 Score=59.07 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|++++|.|+.|+|||||+..|+...
T Consensus 339 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~ 369 (635)
T PRK11147 339 SAQVQRGDKIALIGPNGCGKTTLLKLMLGQL 369 (635)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3688999999999999999999999998764
No 471
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=91.26 E-value=0.35 Score=56.06 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.1
Q ss_pred cccCCCCCCCchHhHHHhhhccC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++.|++|+||||++..+++...
T Consensus 41 yLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 57889999999999999998653
No 472
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=91.25 E-value=0.11 Score=55.59 Aligned_cols=34 Identities=24% Similarity=0.396 Sum_probs=29.9
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|.=+.+.+|+.++|.|++|+|||||+.+|+....
T Consensus 42 ~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~ 75 (382)
T TIGR03415 42 NASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP 75 (382)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4457889999999999999999999999998654
No 473
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=91.24 E-value=0.12 Score=57.56 Aligned_cols=32 Identities=19% Similarity=0.223 Sum_probs=28.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|++++|.|++|+|||||+..|++...
T Consensus 343 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 343 NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45778999999999999999999999987643
No 474
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.22 E-value=0.1 Score=57.85 Aligned_cols=32 Identities=31% Similarity=0.456 Sum_probs=29.0
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=++|.+|.|++|.|++|+||||++.+|-+..+
T Consensus 372 sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d 403 (591)
T KOG0057|consen 372 SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD 403 (591)
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 47899999999999999999999999987654
No 475
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=91.22 E-value=0.099 Score=57.32 Aligned_cols=36 Identities=28% Similarity=0.365 Sum_probs=30.8
Q ss_pred cccc-cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 234 RVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 234 raID-~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++++ .=+.+.+|+.++|+|++|+|||||+.+|+...
T Consensus 274 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~ 310 (500)
T TIGR02633 274 KRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAY 310 (500)
T ss_pred cccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCC
Confidence 3454 44689999999999999999999999999764
No 476
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=91.20 E-value=0.12 Score=56.92 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=29.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~ 303 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVLYGALP 303 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC
Confidence 446889999999999999999999999987653
No 477
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=91.19 E-value=0.11 Score=56.82 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=28.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 17 vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 48 (491)
T PRK10982 17 VNLKVRPHSIHALMGENGAGKSTLLKCLFGIY 48 (491)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 34678899999999999999999999998653
No 478
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.18 E-value=0.13 Score=49.03 Aligned_cols=32 Identities=28% Similarity=0.345 Sum_probs=26.7
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+-+|+.++|.|++|+|||||+..|+.....+.
T Consensus 22 v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~ 53 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLLNALLAFIPPDE 53 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhcCCCC
Confidence 55788999999999999999999887655443
No 479
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=91.12 E-value=0.12 Score=59.24 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=29.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+-+|++++|.|++|+|||||+..|++...
T Consensus 498 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 498 FSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346788999999999999999999999987643
No 480
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.10 E-value=0.1 Score=58.25 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+-+|++++|.|++|+|||||+..|.+..
T Consensus 370 ~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 370 NFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4788999999999999999999999988764
No 481
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=91.09 E-value=0.11 Score=57.23 Aligned_cols=31 Identities=23% Similarity=0.298 Sum_probs=28.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+=+++.+|-|-|++|+.|+||||||.+|++.
T Consensus 99 a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~ 129 (582)
T KOG0062|consen 99 ANLTLSRGRRYGLVGRNGIGKSTLLRAIANG 129 (582)
T ss_pred CceeeecccccceeCCCCCcHHHHHHHHHhc
Confidence 3457999999999999999999999999983
No 482
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.08 E-value=0.12 Score=57.80 Aligned_cols=33 Identities=27% Similarity=0.450 Sum_probs=29.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+-+|++++|.|++|+|||||+..|++..+.
T Consensus 360 ~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p 392 (574)
T PRK11160 360 SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 392 (574)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 467889999999999999999999999986543
No 483
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=91.07 E-value=0.6 Score=46.37 Aligned_cols=33 Identities=18% Similarity=0.059 Sum_probs=28.3
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.-|.-+.+..|++++|.|+.|.||||++.+|+.
T Consensus 21 ~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 21 PNDIHLSAEGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred EEeEEEEecCCcEEEEECCCCCCHHHHHHHHHH
Confidence 455666778999999999999999999998875
No 484
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=91.02 E-value=0.38 Score=55.61 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=23.7
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
+++.||+|+|||+|+..+|+..+...+
T Consensus 490 iLL~GppGtGKT~lakalA~e~~~~fi 516 (733)
T TIGR01243 490 VLLFGPPGTGKTLLAKAVATESGANFI 516 (733)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 789999999999999999998776543
No 485
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=90.99 E-value=0.13 Score=57.60 Aligned_cols=32 Identities=22% Similarity=0.295 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|++++|.|++|+|||||+..|++..+
T Consensus 335 ~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 335 NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45788999999999999999999999987643
No 486
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.96 E-value=0.3 Score=46.10 Aligned_cols=85 Identities=25% Similarity=0.256 Sum_probs=55.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc-CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS-NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMP 322 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~-~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~ 322 (516)
||--+-|.|-+|+|||||+..+.+.. +....+|.+=|. +++..+. .+ -.-+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD---~lR~~l~--------------~d-----------l~fs 52 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGD---NLRHGLN--------------AD-----------LGFS 52 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH---HHCTTTT--------------TT-------------SS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCc---chhhccC--------------CC-----------CCCC
Confidence 45567789999999999999888653 334567777664 2222111 00 0124
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchH
Q 010179 323 VAAREASIYTGITIAEYFRDMGYNVSMMADSTSR 356 (516)
Q Consensus 323 ~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr 356 (516)
...|..-+.....+|..|.++|..|++-+-|.++
T Consensus 53 ~~dR~e~~rr~~~~A~ll~~~G~ivIva~isp~~ 86 (156)
T PF01583_consen 53 KEDREENIRRIAEVAKLLADQGIIVIVAFISPYR 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSEEEEE----SH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCch
Confidence 5678888888889999999999988887666653
No 487
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=90.96 E-value=0.22 Score=48.44 Aligned_cols=55 Identities=24% Similarity=0.268 Sum_probs=43.7
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccC--CCEEEEEeeCCchhHHHHHHH
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN--SDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~--~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
|.-|.+-.|+-.+|+|.+|+|||||+..|+.... ++.+.|-.=+...+++..+-|
T Consensus 24 ~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msE 80 (258)
T COG4107 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSE 80 (258)
T ss_pred ccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhch
Confidence 4556788999999999999999999999998764 455778777777777765543
No 488
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=90.96 E-value=0.13 Score=56.83 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=28.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.=+.+-+|+.++|.|++|+|||||+..|+...
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~ 61 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV 61 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34678899999999999999999999998653
No 489
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=90.93 E-value=0.13 Score=58.84 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=29.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.+-+|++++|.|++|+|||||+..|++..+
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 347888999999999999999999999987643
No 490
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=90.92 E-value=0.11 Score=59.85 Aligned_cols=31 Identities=26% Similarity=0.271 Sum_probs=27.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.|-.|++++|+|.+|+|||||+..|.+--
T Consensus 493 sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 493 SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred eEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999999988653
No 491
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=90.91 E-value=0.11 Score=53.36 Aligned_cols=35 Identities=29% Similarity=0.335 Sum_probs=32.2
Q ss_pred cccccccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 234 raID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+-|.-+.|.+|+++|+.|+.|+||||++.|+..-
T Consensus 39 AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGl 73 (325)
T COG4586 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGL 73 (325)
T ss_pred hhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCc
Confidence 66788999999999999999999999999998754
No 492
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.81 E-value=0.5 Score=53.81 Aligned_cols=25 Identities=32% Similarity=0.369 Sum_probs=21.1
Q ss_pred CccccCCCCCCCchHhHHHhhhccC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.-+++.|++|+|||+++..+|+...
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhc
Confidence 3457899999999999999988743
No 493
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=90.81 E-value=0.13 Score=57.23 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+-+|++++|+|++|+|||||+..|++..+.
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p 394 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIP 394 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 367889999999999999999999999986544
No 494
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=90.81 E-value=0.11 Score=51.34 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=22.3
Q ss_pred ccccccCCccccCCCCCCCchHhH
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVIS 262 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll 262 (516)
=+.+.+|+.++|.|++|+|||||+
T Consensus 15 sl~i~~Ge~~~l~G~sGsGKSTL~ 38 (226)
T cd03270 15 DVDIPRNKLVVITGVSGSGKSSLA 38 (226)
T ss_pred eeecCCCcEEEEEcCCCCCHHHHH
Confidence 368899999999999999999996
No 495
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.77 E-value=0.14 Score=55.51 Aligned_cols=191 Identities=21% Similarity=0.303 Sum_probs=101.8
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCEEEEEee------CCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC------GERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 320 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~i------GeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd 320 (516)
.+++.||+|+|||-|++.||+-.+.. ++++=| |=-+++|.-++..
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVP-faIcDcTtLTQAGYVGeDVEsvi~K---------------------------- 278 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVP-FAICDCTTLTQAGYVGEDVESVIQK---------------------------- 278 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCC-eEEecccchhhcccccccHHHHHHH----------------------------
Confidence 47899999999999999999875432 222222 2222344444432
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCC
Q 010179 321 MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGG 400 (516)
Q Consensus 321 ~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~ 400 (516)
-++.|+|=.++-+.=++++|.+-+.+.+.--+..+ +--+-+|- -..|=+|+|
T Consensus 279 ------------Ll~~A~~nVekAQqGIVflDEvDKi~~~~~~i~~~--RDVsGEGV----QQaLLKllE---------- 330 (564)
T KOG0745|consen 279 ------------LLQEAEYNVEKAQQGIVFLDEVDKITKKAESIHTS--RDVSGEGV----QQALLKLLE---------- 330 (564)
T ss_pred ------------HHHHccCCHHHHhcCeEEEehhhhhcccCcccccc--ccccchhH----HHHHHHHhc----------
Confidence 24456665554444578888888777544333322 22223333 334455665
Q ss_pred CCCCCceeEEEEEecCCCC----CCchhhHhhhcc----ccEEEEeeHhhhhcCCCCCCccccccc--cchhhhhhhhhc
Q 010179 401 PERTGSVTIVGAVSPPGGD----FSDPVTSATLSI----VQVFWGLDKKLAQRKHFPSVNWLISYS--KYSTALESFYEQ 470 (516)
Q Consensus 401 ~~~~GSIT~i~~v~~~~~D----~~dpv~~~~~~i----~d~~ivLsr~La~~g~yPAId~l~S~S--R~~~~l~~~~~~ 470 (516)
|+|--+ .+-+. ..|-|.-.|..| ...|.-||+-++.|.+=-.+-...+.| +..+.
T Consensus 331 ----GtvVnV----peK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s~~~vr~~~------- 395 (564)
T KOG0745|consen 331 ----GTVVNV----PEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPSSKGVRANM------- 395 (564)
T ss_pred ----ccEEcc----cCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCCCccchhhc-------
Confidence 332222 11111 112222223333 267788998888887776676666655 21111
Q ss_pred CCHHHHHHHHHHHHHHHhhhhHHHHHHcCC--------Cccccceee
Q 010179 471 FDPDFINIRTKAREVLQREDDLNEIVQVGY--------LWSLSFHSF 509 (516)
Q Consensus 471 ~~~~~~~~~~~~r~~L~~y~e~~~li~~G~--------~~~~~~~~~ 509 (516)
-...-.+....-|.-|=.--+-.|||..|+ ...++||++
T Consensus 396 ~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L 442 (564)
T KOG0745|consen 396 ATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSL 442 (564)
T ss_pred ccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeecccc
Confidence 111223333444443334456678888775 456677764
No 496
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=90.76 E-value=0.14 Score=56.95 Aligned_cols=33 Identities=27% Similarity=0.390 Sum_probs=29.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+-+|++++|.|++|+|||||+..|.+..+.
T Consensus 349 s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~ 381 (567)
T COG1132 349 SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP 381 (567)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence 345899999999999999999999999987654
No 497
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=90.76 E-value=0.13 Score=57.34 Aligned_cols=33 Identities=30% Similarity=0.335 Sum_probs=28.7
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+-+|+|++|.|+.|+|||||+..|+...
T Consensus 340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~ 372 (530)
T COG0488 340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL 372 (530)
T ss_pred CceEEecCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence 455678899999999999999999999996553
No 498
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=90.70 E-value=0.14 Score=57.14 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=38.9
Q ss_pred cccCCCccccccccccc-cccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 221 SKLAADTPLLTGQRVLD-ALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 221 ~R~~~~epl~TGiraID-~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
++.+..+|=. |...|+ +-+-+-.||.++|.||+|+|||.|+..++.
T Consensus 437 e~v~l~tPt~-g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlgg 483 (659)
T KOG0060|consen 437 EEVSLSTPTN-GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGG 483 (659)
T ss_pred eeeeecCCCC-CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhc
Confidence 5556666655 888888 778899999999999999999999999874
No 499
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=90.69 E-value=0.18 Score=50.89 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=27.6
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCEEEE
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVY 276 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~ 276 (516)
+..|+.+++.|++|+|||+|+..+++..+..++.+
T Consensus 18 l~~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i 52 (262)
T TIGR02640 18 LKSGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLI 52 (262)
T ss_pred HhcCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34577899999999999999999998665554433
No 500
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=90.67 E-value=0.15 Score=48.07 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.8
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.|+|++|+||||++..|+...
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 57899999999999999999864
Done!