Query 010179
Match_columns 516
No_of_seqs 238 out of 1597
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:36:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vr4_A V-type sodium ATPase ca 100.0 5E-128 2E-132 1042.6 41.5 476 21-502 10-488 (600)
2 3mfy_A V-type ATP synthase alp 100.0 4E-129 1E-133 1047.1 27.2 479 20-503 3-484 (588)
3 3gqb_A V-type ATP synthase alp 100.0 2E-126 7E-131 1026.3 36.6 471 21-502 3-475 (578)
4 3oaa_A ATP synthase subunit al 100.0 9E-106 3E-110 859.0 38.9 398 1-505 8-416 (513)
5 2qe7_A ATP synthase subunit al 100.0 8E-105 3E-109 853.7 40.1 394 1-504 8-404 (502)
6 2r9v_A ATP synthase subunit al 100.0 5E-105 2E-109 855.6 37.9 394 1-503 20-416 (515)
7 2ck3_A ATP synthase subunit al 100.0 4E-104 1E-108 849.9 37.8 393 1-503 8-411 (510)
8 1fx0_A ATP synthase alpha chai 100.0 1E-104 5E-109 852.5 29.5 393 1-503 9-404 (507)
9 3vr4_D V-type sodium ATPase su 100.0 5E-103 2E-107 832.3 37.6 377 19-502 10-400 (465)
10 3gqb_B V-type ATP synthase bet 100.0 3E-102 9E-107 826.8 37.2 378 18-502 5-403 (464)
11 2c61_A A-type ATP synthase non 100.0 7E-103 2E-107 835.0 31.4 380 16-502 9-401 (469)
12 2ck3_D ATP synthase subunit be 100.0 5E-100 2E-104 813.0 40.8 371 18-501 11-398 (482)
13 1fx0_B ATP synthase beta chain 100.0 1E-100 4E-105 820.5 35.1 371 20-502 19-412 (498)
14 1sky_E F1-ATPase, F1-ATP synth 100.0 5.7E-93 2E-97 759.9 36.6 368 21-501 3-390 (473)
15 3l0o_A Transcription terminati 100.0 8.7E-73 3E-77 589.1 21.0 275 192-497 119-402 (427)
16 3ice_A Transcription terminati 100.0 1.9E-70 6.4E-75 572.4 19.9 251 221-501 146-406 (422)
17 2dpy_A FLII, flagellum-specifi 100.0 5.8E-66 2E-70 549.7 33.2 371 18-500 7-391 (438)
18 2obl_A ESCN; ATPase, hydrolase 100.0 1.8E-60 6E-65 493.6 27.3 267 210-500 35-302 (347)
19 2cvh_A DNA repair and recombin 97.7 4.5E-05 1.5E-09 71.1 6.0 62 229-291 2-67 (220)
20 4a74_A DNA repair and recombin 97.6 0.00011 3.6E-09 69.0 8.2 42 227-268 5-48 (231)
21 2zts_A Putative uncharacterize 97.6 0.00012 4.2E-09 69.2 7.8 66 227-292 10-80 (251)
22 1n0w_A DNA repair protein RAD5 97.6 0.00013 4.4E-09 69.0 7.7 42 227-268 4-47 (243)
23 1v5w_A DMC1, meiotic recombina 97.3 0.00053 1.8E-08 70.0 8.8 121 226-360 101-234 (343)
24 2ehv_A Hypothetical protein PH 97.3 0.00015 5.2E-09 68.7 4.2 65 227-291 10-79 (251)
25 2z43_A DNA repair and recombin 97.3 0.00061 2.1E-08 68.9 8.6 120 226-360 86-218 (324)
26 3lda_A DNA repair protein RAD5 97.1 0.0034 1.2E-07 65.9 13.2 43 225-267 156-200 (400)
27 3io5_A Recombination and repai 97.1 0.00049 1.7E-08 70.6 6.4 108 227-358 5-124 (333)
28 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00023 7.8E-09 66.4 3.5 65 228-292 4-72 (235)
29 2i1q_A DNA repair and recombin 97.1 0.00081 2.8E-08 67.5 7.5 120 226-360 77-219 (322)
30 1pzn_A RAD51, DNA repair and r 97.0 0.0011 3.9E-08 68.0 8.1 119 226-360 110-246 (349)
31 2zr9_A Protein RECA, recombina 96.9 0.00083 2.8E-08 69.1 5.7 109 226-358 39-152 (349)
32 3hr8_A Protein RECA; alpha and 96.9 0.00095 3.2E-08 69.1 6.0 52 227-278 40-96 (356)
33 3pvs_A Replication-associated 96.8 0.00096 3.3E-08 70.9 5.4 56 236-291 41-96 (447)
34 2dr3_A UPF0273 protein PH0284; 96.7 0.00097 3.3E-08 62.9 3.7 64 228-291 4-71 (247)
35 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.00094 3.2E-08 68.5 3.7 44 225-268 102-146 (331)
36 1u94_A RECA protein, recombina 96.5 0.0026 9E-08 65.7 5.7 43 226-268 41-86 (356)
37 1xp8_A RECA protein, recombina 96.4 0.0026 8.9E-08 66.0 5.5 108 226-357 52-164 (366)
38 3bh0_A DNAB-like replicative h 96.3 0.011 3.8E-07 59.4 9.3 62 227-288 49-113 (315)
39 3cmu_A Protein RECA, recombina 96.1 0.0092 3.1E-07 73.7 8.9 180 224-440 10-202 (2050)
40 1zp6_A Hypothetical protein AT 96.0 0.0026 9E-08 57.9 2.4 34 239-272 3-36 (191)
41 3cmw_A Protein RECA, recombina 95.7 0.0051 1.7E-07 74.9 4.2 113 224-360 10-127 (1706)
42 1cr0_A DNA primase/helicase; R 95.7 0.0032 1.1E-07 62.1 1.9 42 228-269 16-59 (296)
43 2v1u_A Cell division control p 95.7 0.023 8E-07 56.7 8.2 27 243-269 42-68 (387)
44 3uk6_A RUVB-like 2; hexameric 95.6 0.016 5.6E-07 58.2 6.8 29 245-273 70-98 (368)
45 4b4t_J 26S protease regulatory 95.5 0.036 1.2E-06 58.3 9.0 27 248-274 185-211 (405)
46 3t15_A Ribulose bisphosphate c 95.4 0.0082 2.8E-07 59.7 3.8 27 248-274 39-65 (293)
47 3h4m_A Proteasome-activating n 95.4 0.11 3.7E-06 50.3 11.7 30 244-273 50-79 (285)
48 2r6a_A DNAB helicase, replicat 95.4 0.016 5.4E-07 61.2 6.1 62 227-288 184-249 (454)
49 1nlf_A Regulatory protein REPA 95.4 0.0036 1.2E-07 61.4 0.8 45 224-268 8-53 (279)
50 3cmu_A Protein RECA, recombina 95.2 0.0098 3.4E-07 73.5 4.3 109 225-358 1404-1518(2050)
51 3bs4_A Uncharacterized protein 95.2 0.025 8.7E-07 56.0 6.4 65 229-293 3-71 (260)
52 1znw_A Guanylate kinase, GMP k 95.2 0.0059 2E-07 57.1 1.6 29 241-269 16-44 (207)
53 3cf0_A Transitional endoplasmi 95.2 0.087 3E-06 52.2 10.2 29 244-272 48-76 (301)
54 1z6g_A Guanylate kinase; struc 95.1 0.0062 2.1E-07 57.8 1.7 30 240-269 18-47 (218)
55 1jbk_A CLPB protein; beta barr 95.1 0.06 2E-06 47.5 8.0 27 243-269 41-67 (195)
56 3tr0_A Guanylate kinase, GMP k 95.1 0.0067 2.3E-07 55.7 1.7 28 242-269 4-31 (205)
57 4b4t_K 26S protease regulatory 95.0 0.089 3.1E-06 55.7 10.3 27 248-274 209-235 (428)
58 3ec2_A DNA replication protein 95.0 0.0085 2.9E-07 54.4 2.1 29 241-269 34-62 (180)
59 3tif_A Uncharacterized ABC tra 95.0 0.013 4.3E-07 56.8 3.4 36 238-273 24-59 (235)
60 4eun_A Thermoresistant glucoki 94.9 0.0079 2.7E-07 55.8 1.6 41 229-269 13-53 (200)
61 2pcj_A ABC transporter, lipopr 94.8 0.014 4.7E-07 56.0 3.0 36 238-273 23-58 (224)
62 4b4t_M 26S protease regulatory 94.7 0.06 2.1E-06 57.1 8.1 28 248-275 218-245 (434)
63 4b4t_I 26S protease regulatory 94.7 0.075 2.6E-06 56.4 8.8 27 248-274 219-245 (437)
64 2qby_A CDC6 homolog 1, cell di 94.7 0.048 1.6E-06 54.3 6.9 27 243-269 43-69 (386)
65 2ff7_A Alpha-hemolysin translo 94.7 0.016 5.5E-07 56.4 3.3 36 238-273 28-63 (247)
66 1w5s_A Origin recognition comp 94.7 0.07 2.4E-06 54.0 8.2 93 244-358 49-151 (412)
67 1d2n_A N-ethylmaleimide-sensit 94.7 0.082 2.8E-06 51.1 8.4 31 244-274 63-93 (272)
68 1fnn_A CDC6P, cell division co 94.7 0.13 4.4E-06 51.5 10.0 35 247-281 46-83 (389)
69 4b4t_L 26S protease subunit RP 94.6 0.086 2.9E-06 56.0 9.0 27 248-274 218-244 (437)
70 2j41_A Guanylate kinase; GMP, 94.6 0.011 3.7E-07 54.3 1.7 29 241-269 2-30 (207)
71 1g6h_A High-affinity branched- 94.6 0.018 6E-07 56.4 3.4 36 238-273 26-61 (257)
72 2cbz_A Multidrug resistance-as 94.6 0.01 3.4E-07 57.5 1.6 31 239-269 25-55 (237)
73 1sgw_A Putative ABC transporte 94.6 0.018 6.3E-07 55.1 3.4 35 239-273 29-63 (214)
74 4g1u_C Hemin import ATP-bindin 94.6 0.012 4E-07 58.2 2.1 32 239-270 31-62 (266)
75 1b0u_A Histidine permease; ABC 94.6 0.018 6.3E-07 56.6 3.4 36 238-273 25-60 (262)
76 3gfo_A Cobalt import ATP-bindi 94.6 0.018 6.1E-07 57.3 3.3 36 238-273 27-62 (275)
77 2pze_A Cystic fibrosis transme 94.5 0.013 4.3E-07 56.5 2.1 34 238-271 27-60 (229)
78 3c8u_A Fructokinase; YP_612366 94.5 0.01 3.5E-07 55.5 1.4 28 242-269 19-46 (208)
79 4b4t_H 26S protease regulatory 94.5 0.086 2.9E-06 56.4 8.6 27 248-274 246-272 (467)
80 2olj_A Amino acid ABC transpor 94.5 0.02 6.8E-07 56.5 3.4 36 238-273 43-78 (263)
81 1xwi_A SKD1 protein; VPS4B, AA 94.4 0.22 7.4E-06 50.0 11.1 24 246-269 46-69 (322)
82 1vpl_A ABC transporter, ATP-bi 94.4 0.02 7E-07 56.2 3.4 35 239-273 35-69 (256)
83 1ji0_A ABC transporter; ATP bi 94.4 0.014 4.7E-07 56.6 2.1 35 239-273 26-60 (240)
84 2ihy_A ABC transporter, ATP-bi 94.4 0.014 4.7E-07 58.1 2.1 36 238-273 40-75 (279)
85 2ixe_A Antigen peptide transpo 94.4 0.021 7.1E-07 56.5 3.4 36 238-273 38-73 (271)
86 1htw_A HI0065; nucleotide-bind 94.4 0.011 3.7E-07 54.0 1.2 30 240-269 28-57 (158)
87 3cmw_A Protein RECA, recombina 94.4 0.034 1.2E-06 67.9 5.8 61 226-286 361-426 (1706)
88 2v9p_A Replication protein E1; 94.4 0.011 3.7E-07 59.9 1.3 33 237-269 118-150 (305)
89 1mv5_A LMRA, multidrug resista 94.3 0.013 4.6E-07 56.7 1.8 32 239-270 22-53 (243)
90 2p65_A Hypothetical protein PF 94.3 0.052 1.8E-06 48.1 5.6 27 243-269 41-67 (187)
91 1ixz_A ATP-dependent metallopr 94.3 0.022 7.4E-07 54.6 3.1 32 241-274 47-78 (254)
92 2nq2_C Hypothetical ABC transp 94.3 0.016 5.3E-07 56.8 2.2 33 239-271 25-57 (253)
93 2yz2_A Putative ABC transporte 94.3 0.024 8.1E-07 55.8 3.4 34 239-272 27-60 (266)
94 3fvq_A Fe(3+) IONS import ATP- 94.2 0.014 4.9E-07 60.4 1.9 35 237-271 22-56 (359)
95 2qi9_C Vitamin B12 import ATP- 94.2 0.014 4.9E-07 57.1 1.7 34 238-271 19-52 (249)
96 2ghi_A Transport protein; mult 94.2 0.014 4.8E-07 57.3 1.6 32 239-270 40-71 (260)
97 2d2e_A SUFC protein; ABC-ATPas 94.2 0.014 4.9E-07 56.8 1.6 31 238-268 22-52 (250)
98 2zu0_C Probable ATP-dependent 94.2 0.015 5E-07 57.4 1.7 30 239-268 40-69 (267)
99 1lvg_A Guanylate kinase, GMP k 94.1 0.014 4.9E-07 54.4 1.4 25 244-268 3-27 (198)
100 4gp7_A Metallophosphoesterase; 94.1 0.013 4.6E-07 53.2 1.1 27 240-266 4-30 (171)
101 3lnc_A Guanylate kinase, GMP k 94.1 0.013 4.4E-07 55.5 1.0 29 241-269 23-52 (231)
102 1pui_A ENGB, probable GTP-bind 94.0 0.01 3.6E-07 54.4 0.3 35 234-269 16-50 (210)
103 1z47_A CYSA, putative ABC-tran 94.0 0.019 6.4E-07 59.4 2.2 35 237-271 33-67 (355)
104 2x8a_A Nuclear valosin-contain 94.0 0.02 7E-07 56.4 2.4 30 241-272 42-71 (274)
105 1kgd_A CASK, peripheral plasma 94.0 0.016 5.6E-07 52.9 1.5 26 244-269 4-29 (180)
106 2kjq_A DNAA-related protein; s 94.0 0.015 5.1E-07 52.2 1.2 26 244-269 35-60 (149)
107 3rlf_A Maltose/maltodextrin im 94.0 0.028 9.6E-07 58.6 3.5 36 237-272 21-56 (381)
108 2yyz_A Sugar ABC transporter, 94.0 0.02 6.8E-07 59.2 2.3 35 237-271 21-55 (359)
109 2it1_A 362AA long hypothetical 93.9 0.02 6.8E-07 59.3 2.3 36 237-272 21-56 (362)
110 1v43_A Sugar-binding transport 93.9 0.021 7.1E-07 59.4 2.3 35 237-271 29-63 (372)
111 3n70_A Transport activator; si 93.9 0.14 4.6E-06 45.1 7.3 26 244-269 23-48 (145)
112 3vaa_A Shikimate kinase, SK; s 93.9 0.021 7.1E-07 52.9 2.0 31 240-270 20-50 (199)
113 2jeo_A Uridine-cytidine kinase 93.9 0.016 5.5E-07 55.6 1.3 29 240-268 20-48 (245)
114 1g29_1 MALK, maltose transport 93.8 0.03 1E-06 58.1 3.4 36 237-272 21-56 (372)
115 3nh6_A ATP-binding cassette SU 93.6 0.023 8E-07 57.4 2.1 36 238-273 73-108 (306)
116 3asz_A Uridine kinase; cytidin 93.6 0.016 5.6E-07 53.7 0.8 28 242-269 3-30 (211)
117 1l8q_A Chromosomal replication 93.5 0.031 1E-06 55.6 2.7 26 244-269 36-61 (324)
118 3d31_A Sulfate/molybdate ABC t 93.5 0.017 6E-07 59.4 0.9 35 237-271 18-52 (348)
119 3u61_B DNA polymerase accessor 93.5 0.032 1.1E-06 55.3 2.7 69 247-323 49-118 (324)
120 3b85_A Phosphate starvation-in 93.4 0.021 7.3E-07 54.2 1.4 27 242-268 19-45 (208)
121 3gd7_A Fusion complex of cysti 93.4 0.021 7.1E-07 59.7 1.3 31 239-269 41-71 (390)
122 2i3b_A HCR-ntpase, human cance 93.3 0.026 8.7E-07 52.9 1.6 24 245-268 1-24 (189)
123 3tui_C Methionine import ATP-b 93.3 0.043 1.5E-06 56.9 3.5 40 234-273 42-82 (366)
124 3vfd_A Spastin; ATPase, microt 93.3 0.36 1.2E-05 49.4 10.4 28 245-272 148-175 (389)
125 1oxx_K GLCV, glucose, ABC tran 93.2 0.018 6E-07 59.4 0.4 36 237-272 23-58 (353)
126 2bbs_A Cystic fibrosis transme 93.2 0.023 8E-07 56.9 1.2 32 239-270 58-89 (290)
127 3bgw_A DNAB-like replicative h 93.2 0.04 1.4E-06 58.3 3.0 62 227-288 178-242 (444)
128 2pjz_A Hypothetical protein ST 93.2 0.03 1E-06 55.2 2.0 33 239-273 25-57 (263)
129 2eyu_A Twitching motility prot 93.1 0.024 8.1E-07 55.8 1.1 34 235-269 16-49 (261)
130 1iy2_A ATP-dependent metallopr 93.1 0.039 1.3E-06 53.8 2.7 31 241-273 71-101 (278)
131 1kag_A SKI, shikimate kinase I 93.1 0.03 1E-06 50.0 1.7 27 244-270 3-29 (173)
132 3a00_A Guanylate kinase, GMP k 93.1 0.03 1E-06 51.4 1.6 25 245-269 1-25 (186)
133 1y63_A LMAJ004144AAA protein; 92.9 0.032 1.1E-06 51.1 1.6 28 241-268 6-33 (184)
134 1tf7_A KAIC; homohexamer, hexa 92.9 0.026 8.7E-07 60.7 1.1 39 227-265 19-59 (525)
135 1t9h_A YLOQ, probable GTPase E 92.8 0.014 4.8E-07 59.1 -1.0 35 236-270 164-198 (307)
136 1s96_A Guanylate kinase, GMP k 92.8 0.033 1.1E-06 53.3 1.6 29 242-270 13-41 (219)
137 4a1f_A DNAB helicase, replicat 92.8 0.036 1.2E-06 56.9 2.0 62 227-288 27-91 (338)
138 2q6t_A DNAB replication FORK h 92.8 0.03 1E-06 58.9 1.4 62 227-288 181-246 (444)
139 2qt1_A Nicotinamide riboside k 92.8 0.029 9.8E-07 52.0 1.1 31 239-269 15-45 (207)
140 2bdt_A BH3686; alpha-beta prot 92.7 0.033 1.1E-06 50.7 1.4 25 245-269 2-26 (189)
141 3ney_A 55 kDa erythrocyte memb 92.7 0.037 1.3E-06 52.6 1.7 29 241-269 15-43 (197)
142 1tf7_A KAIC; homohexamer, hexa 92.6 0.055 1.9E-06 58.1 3.2 62 227-288 261-326 (525)
143 1u0l_A Probable GTPase ENGC; p 92.5 0.03 1E-06 55.9 1.0 38 235-272 159-196 (301)
144 1knq_A Gluconate kinase; ALFA/ 92.5 0.035 1.2E-06 49.8 1.3 26 244-269 7-32 (175)
145 2onk_A Molybdate/tungstate ABC 92.5 0.068 2.3E-06 51.8 3.4 35 238-273 18-52 (240)
146 3bos_A Putative DNA replicatio 92.5 0.035 1.2E-06 51.5 1.3 36 234-269 41-76 (242)
147 3tau_A Guanylate kinase, GMP k 92.5 0.04 1.4E-06 51.6 1.6 29 243-271 6-34 (208)
148 1ye8_A Protein THEP1, hypothet 92.5 0.037 1.2E-06 51.2 1.3 24 247-270 2-25 (178)
149 1q57_A DNA primase/helicase; d 92.4 0.04 1.4E-06 58.7 1.8 62 227-288 222-288 (503)
150 2z4s_A Chromosomal replication 92.4 0.068 2.3E-06 56.3 3.5 25 245-269 130-154 (440)
151 2yv5_A YJEQ protein; hydrolase 92.4 0.035 1.2E-06 55.5 1.2 36 235-271 155-190 (302)
152 3aez_A Pantothenate kinase; tr 92.3 0.037 1.3E-06 55.8 1.4 28 241-268 86-113 (312)
153 1jr3_A DNA polymerase III subu 92.3 0.054 1.9E-06 54.2 2.5 22 248-269 41-62 (373)
154 3hu3_A Transitional endoplasmi 92.2 0.29 9.9E-06 52.4 8.2 27 245-271 238-264 (489)
155 2qm8_A GTPase/ATPase; G protei 92.1 0.059 2E-06 54.9 2.5 30 239-268 49-78 (337)
156 2qor_A Guanylate kinase; phosp 92.1 0.047 1.6E-06 50.7 1.7 28 242-269 9-36 (204)
157 3uie_A Adenylyl-sulfate kinase 92.1 0.04 1.4E-06 51.0 1.2 27 243-269 23-49 (200)
158 1sq5_A Pantothenate kinase; P- 92.0 0.028 9.7E-07 56.2 0.0 28 241-268 76-103 (308)
159 2npi_A Protein CLP1; CLP1-PCF1 91.9 0.042 1.4E-06 58.5 1.2 33 237-269 130-162 (460)
160 1lw7_A Transcriptional regulat 91.8 0.038 1.3E-06 56.4 0.6 32 241-272 164-197 (365)
161 2qby_B CDC6 homolog 3, cell di 91.8 0.091 3.1E-06 52.7 3.5 27 243-269 43-69 (384)
162 2gno_A DNA polymerase III, gam 91.7 0.07 2.4E-06 53.6 2.5 48 246-293 19-74 (305)
163 1yqt_A RNAse L inhibitor; ATP- 91.7 0.067 2.3E-06 58.0 2.5 35 235-269 37-71 (538)
164 2ius_A DNA translocase FTSK; n 91.7 1 3.5E-05 48.7 11.7 47 239-286 161-212 (512)
165 2a5y_B CED-4; apoptosis; HET: 91.7 0.24 8.2E-06 53.3 6.8 37 246-282 153-195 (549)
166 3j16_B RLI1P; ribosome recycli 91.7 0.067 2.3E-06 59.0 2.5 35 235-269 93-127 (608)
167 3cf2_A TER ATPase, transitiona 91.6 0.4 1.4E-05 54.6 8.8 25 248-272 241-265 (806)
168 1cke_A CK, MSSA, protein (cyti 91.6 0.056 1.9E-06 50.4 1.6 25 245-269 5-29 (227)
169 3te6_A Regulatory protein SIR3 91.6 0.35 1.2E-05 49.0 7.6 28 242-269 42-69 (318)
170 2bbw_A Adenylate kinase 4, AK4 91.5 0.056 1.9E-06 51.7 1.5 25 244-268 26-50 (246)
171 1zu4_A FTSY; GTPase, signal re 91.5 0.6 2E-05 47.2 9.1 43 240-282 100-144 (320)
172 1z6t_A APAF-1, apoptotic prote 91.4 0.29 9.8E-06 52.5 7.1 39 244-282 146-190 (591)
173 2qp9_X Vacuolar protein sortin 91.4 0.17 5.9E-06 51.5 5.1 28 246-273 85-112 (355)
174 1in4_A RUVB, holliday junction 91.4 0.086 2.9E-06 53.1 2.8 46 246-291 52-98 (334)
175 2vp4_A Deoxynucleoside kinase; 91.4 0.082 2.8E-06 50.2 2.5 33 241-274 16-48 (230)
176 3cm0_A Adenylate kinase; ATP-b 91.3 0.052 1.8E-06 49.0 0.9 26 244-269 3-28 (186)
177 2yl4_A ATP-binding cassette SU 91.2 0.077 2.6E-06 57.9 2.3 36 238-273 363-398 (595)
178 2gza_A Type IV secretion syste 91.1 0.061 2.1E-06 55.2 1.4 34 239-272 169-202 (361)
179 3b5x_A Lipid A export ATP-bind 91.1 0.078 2.7E-06 57.8 2.2 34 238-271 362-395 (582)
180 3iij_A Coilin-interacting nucl 91.0 0.08 2.7E-06 47.7 1.9 28 243-270 9-36 (180)
181 1qhx_A CPT, protein (chloramph 90.9 0.11 3.8E-06 46.4 2.8 28 245-272 3-30 (178)
182 3pfi_A Holliday junction ATP-d 90.9 0.25 8.4E-06 49.0 5.6 46 246-291 56-102 (338)
183 3qf4_B Uncharacterized ABC tra 90.9 0.087 3E-06 57.6 2.4 34 239-272 375-408 (598)
184 3bk7_A ABC transporter ATP-bin 90.8 0.089 3E-06 58.0 2.4 35 235-269 107-141 (607)
185 3b60_A Lipid A export ATP-bind 90.8 0.075 2.6E-06 57.9 1.8 35 238-272 362-396 (582)
186 3b9q_A Chloroplast SRP recepto 90.8 0.07 2.4E-06 53.6 1.4 29 240-268 95-123 (302)
187 4a82_A Cystic fibrosis transme 90.8 0.068 2.3E-06 58.2 1.4 35 239-273 361-395 (578)
188 4e22_A Cytidylate kinase; P-lo 90.7 0.076 2.6E-06 51.4 1.5 27 243-269 25-51 (252)
189 1rj9_A FTSY, signal recognitio 90.6 0.08 2.7E-06 53.3 1.7 26 243-268 100-125 (304)
190 1a5t_A Delta prime, HOLB; zinc 90.6 0.16 5.6E-06 51.0 4.0 21 248-268 27-47 (334)
191 3b9p_A CG5977-PA, isoform A; A 90.5 0.11 3.9E-06 50.5 2.6 28 245-272 54-81 (297)
192 2gj8_A MNME, tRNA modification 90.4 0.067 2.3E-06 48.0 0.8 26 244-269 3-28 (172)
193 1lv7_A FTSH; alpha/beta domain 90.4 0.11 3.6E-06 49.8 2.2 25 248-272 48-72 (257)
194 1kht_A Adenylate kinase; phosp 90.3 0.089 3E-06 47.3 1.5 25 245-269 3-27 (192)
195 1rz3_A Hypothetical protein rb 90.3 0.074 2.5E-06 49.4 1.0 28 241-268 18-45 (201)
196 1yqt_A RNAse L inhibitor; ATP- 90.3 0.1 3.4E-06 56.6 2.1 28 242-269 309-336 (538)
197 2rcn_A Probable GTPase ENGC; Y 90.2 0.072 2.4E-06 55.1 0.9 35 236-270 206-240 (358)
198 3ozx_A RNAse L inhibitor; ATP 90.2 0.098 3.4E-06 56.8 2.1 29 241-269 290-318 (538)
199 3kb2_A SPBC2 prophage-derived 90.2 0.082 2.8E-06 46.7 1.2 23 247-269 3-25 (173)
200 2qz4_A Paraplegin; AAA+, SPG7, 90.2 0.13 4.4E-06 48.8 2.6 27 246-272 40-66 (262)
201 3dl0_A Adenylate kinase; phosp 90.1 0.11 3.8E-06 48.2 2.0 24 247-270 2-25 (216)
202 2pt7_A CAG-ALFA; ATPase, prote 90.1 0.1 3.5E-06 52.9 1.9 33 240-272 166-198 (330)
203 2wwf_A Thymidilate kinase, put 90.0 0.088 3E-06 48.4 1.3 26 243-268 8-33 (212)
204 3qf4_A ABC transporter, ATP-bi 90.0 0.17 5.8E-06 55.3 3.7 35 239-273 363-397 (587)
205 1zuh_A Shikimate kinase; alpha 90.0 0.11 3.7E-06 46.3 1.8 25 246-270 8-32 (168)
206 2p5t_B PEZT; postsegregational 90.0 0.1 3.5E-06 50.4 1.7 31 241-271 28-58 (253)
207 1nn5_A Similar to deoxythymidy 89.9 0.086 3E-06 48.4 1.1 27 242-268 6-32 (215)
208 3nwj_A ATSK2; P loop, shikimat 89.8 0.079 2.7E-06 51.9 0.8 30 240-269 40-72 (250)
209 3fb4_A Adenylate kinase; psych 89.8 0.11 3.7E-06 48.2 1.7 24 247-270 2-25 (216)
210 3trf_A Shikimate kinase, SK; a 89.8 0.12 4.1E-06 46.6 1.9 26 245-270 5-30 (185)
211 3bk7_A ABC transporter ATP-bin 89.7 0.12 4E-06 57.0 2.1 28 242-269 379-406 (607)
212 1ofh_A ATP-dependent HSL prote 89.6 0.15 5E-06 49.5 2.6 30 244-273 49-78 (310)
213 2pez_A Bifunctional 3'-phospho 89.6 0.098 3.3E-06 47.2 1.2 25 244-268 4-28 (179)
214 2vli_A Antibiotic resistance p 89.5 0.13 4.4E-06 46.1 1.9 29 244-272 4-32 (183)
215 1svm_A Large T antigen; AAA+ f 89.4 0.1 3.4E-06 54.3 1.3 32 240-271 164-195 (377)
216 2yhs_A FTSY, cell division pro 89.3 0.11 3.7E-06 56.1 1.5 29 240-268 288-316 (503)
217 2og2_A Putative signal recogni 89.1 0.11 3.9E-06 53.5 1.4 29 240-268 152-180 (359)
218 3eie_A Vacuolar protein sortin 89.0 0.14 4.7E-06 51.2 1.9 27 247-273 53-79 (322)
219 2qag_B Septin-6, protein NEDD5 89.0 0.13 4.3E-06 54.5 1.7 30 239-268 34-65 (427)
220 3co5_A Putative two-component 89.0 0.44 1.5E-05 41.7 5.0 35 245-281 27-61 (143)
221 2iyv_A Shikimate kinase, SK; t 88.9 0.15 5.2E-06 45.9 2.0 25 246-270 3-27 (184)
222 2f9l_A RAB11B, member RAS onco 88.8 0.12 4.3E-06 47.0 1.3 23 247-269 7-29 (199)
223 1jjv_A Dephospho-COA kinase; P 88.8 0.13 4.3E-06 47.5 1.3 21 247-267 4-24 (206)
224 2v54_A DTMP kinase, thymidylat 88.7 0.14 4.8E-06 46.7 1.6 26 244-269 3-28 (204)
225 2yvu_A Probable adenylyl-sulfa 88.7 0.12 4.2E-06 46.8 1.2 28 242-269 10-37 (186)
226 2plr_A DTMP kinase, probable t 88.7 0.12 4E-06 47.3 1.0 26 244-269 3-28 (213)
227 2if2_A Dephospho-COA kinase; a 88.7 0.11 3.7E-06 47.7 0.8 21 247-267 3-23 (204)
228 2r62_A Cell division protease 88.7 0.17 5.9E-06 48.4 2.3 24 248-271 47-70 (268)
229 2dhr_A FTSH; AAA+ protein, hex 88.6 0.19 6.4E-06 54.2 2.7 29 242-272 63-91 (499)
230 1gvn_B Zeta; postsegregational 88.6 0.16 5.6E-06 50.2 2.1 30 241-270 29-58 (287)
231 3dm5_A SRP54, signal recogniti 88.5 0.62 2.1E-05 49.5 6.6 25 244-268 99-123 (443)
232 3sfz_A APAF-1, apoptotic pepti 88.5 0.61 2.1E-05 53.7 7.1 37 246-282 148-190 (1249)
233 2chg_A Replication factor C sm 88.5 0.15 5E-06 46.1 1.6 25 244-268 37-61 (226)
234 1oix_A RAS-related protein RAB 88.5 0.12 4E-06 47.2 0.9 23 247-269 31-53 (191)
235 2wji_A Ferrous iron transport 88.3 0.14 4.7E-06 45.3 1.2 22 247-268 5-26 (165)
236 2w58_A DNAI, primosome compone 88.3 0.14 4.8E-06 46.9 1.3 24 246-269 55-78 (202)
237 3t61_A Gluconokinase; PSI-biol 88.2 0.19 6.6E-06 46.1 2.2 23 247-269 20-42 (202)
238 3kta_A Chromosome segregation 88.1 0.17 5.9E-06 45.5 1.7 29 238-267 20-48 (182)
239 2c95_A Adenylate kinase 1; tra 88.1 0.15 5E-06 46.2 1.3 28 243-270 7-34 (196)
240 2ewv_A Twitching motility prot 88.1 0.14 4.9E-06 52.7 1.4 28 242-269 133-160 (372)
241 2rhm_A Putative kinase; P-loop 88.1 0.15 5.2E-06 45.9 1.4 27 244-270 4-30 (193)
242 2p67_A LAO/AO transport system 88.0 1.4 4.9E-05 44.4 8.7 29 240-268 51-79 (341)
243 2oap_1 GSPE-2, type II secreti 88.0 0.18 6E-06 54.5 2.0 34 240-273 255-288 (511)
244 2iw3_A Elongation factor 3A; a 87.9 0.15 5.2E-06 59.2 1.5 30 238-267 454-483 (986)
245 3lw7_A Adenylate kinase relate 87.9 0.17 6E-06 44.1 1.6 21 248-269 4-24 (179)
246 1zd8_A GTP:AMP phosphotransfer 87.9 0.16 5.5E-06 47.7 1.4 28 243-270 5-32 (227)
247 1vt4_I APAF-1 related killer D 87.8 0.91 3.1E-05 53.4 7.9 39 245-283 150-193 (1221)
248 1aky_A Adenylate kinase; ATP:A 87.8 0.17 6E-06 47.2 1.6 27 244-270 3-29 (220)
249 1ly1_A Polynucleotide kinase; 87.8 0.16 5.4E-06 45.1 1.2 21 247-267 4-24 (181)
250 3ozx_A RNAse L inhibitor; ATP 87.8 0.18 6.1E-06 54.7 1.9 29 241-269 21-49 (538)
251 3cf2_A TER ATPase, transitiona 87.7 0.31 1.1E-05 55.5 3.8 27 246-272 512-538 (806)
252 2zej_A Dardarin, leucine-rich 87.6 0.15 5.2E-06 45.8 1.1 22 247-268 4-25 (184)
253 3hws_A ATP-dependent CLP prote 87.6 0.26 8.8E-06 49.9 2.9 29 245-273 51-79 (363)
254 1ypw_A Transitional endoplasmi 87.6 0.29 1E-05 55.5 3.6 32 242-273 235-266 (806)
255 2cdn_A Adenylate kinase; phosp 87.6 0.21 7E-06 45.9 2.0 25 246-270 21-45 (201)
256 1tev_A UMP-CMP kinase; ploop, 87.6 0.15 5.2E-06 45.7 1.1 26 245-270 3-28 (196)
257 4f4c_A Multidrug resistance pr 87.6 0.18 6.2E-06 60.3 2.0 33 238-270 1098-1130(1321)
258 3m6a_A ATP-dependent protease 87.5 0.19 6.5E-06 54.4 1.9 31 243-273 106-136 (543)
259 1hqc_A RUVB; extended AAA-ATPa 87.5 0.26 9E-06 48.2 2.8 28 245-272 38-65 (324)
260 2jaq_A Deoxyguanosine kinase; 87.5 0.17 6E-06 45.8 1.4 25 247-271 2-26 (205)
261 3sop_A Neuronal-specific septi 87.4 0.15 5.1E-06 50.3 0.9 24 247-270 4-27 (270)
262 1via_A Shikimate kinase; struc 87.2 0.18 6.3E-06 45.2 1.4 24 247-270 6-29 (175)
263 1ukz_A Uridylate kinase; trans 87.2 0.21 7.3E-06 45.7 1.8 24 247-270 17-40 (203)
264 3jvv_A Twitching mobility prot 87.1 0.17 6E-06 52.0 1.3 29 241-269 119-147 (356)
265 2bwj_A Adenylate kinase 5; pho 87.1 0.15 5.2E-06 46.2 0.7 27 244-270 11-37 (199)
266 1odf_A YGR205W, hypothetical 3 87.0 0.18 6E-06 50.3 1.2 27 242-268 28-54 (290)
267 3e70_C DPA, signal recognition 87.0 0.17 5.9E-06 51.4 1.2 28 241-268 125-152 (328)
268 2r44_A Uncharacterized protein 86.9 0.2 6.8E-06 49.7 1.5 30 244-273 45-74 (331)
269 2wjg_A FEOB, ferrous iron tran 86.8 0.2 6.7E-06 44.7 1.3 22 247-268 9-30 (188)
270 1z2a_A RAS-related protein RAB 86.8 0.2 6.8E-06 43.4 1.3 22 247-268 7-28 (168)
271 3be4_A Adenylate kinase; malar 86.7 0.19 6.7E-06 47.0 1.3 27 244-270 4-30 (217)
272 2ze6_A Isopentenyl transferase 86.7 0.22 7.6E-06 48.2 1.7 24 248-271 4-27 (253)
273 2dyk_A GTP-binding protein; GT 86.7 0.2 6.9E-06 43.1 1.3 23 247-269 3-25 (161)
274 3d8b_A Fidgetin-like protein 1 86.7 0.29 9.8E-06 49.7 2.6 28 245-272 117-144 (357)
275 1kao_A RAP2A; GTP-binding prot 86.6 0.2 7E-06 43.0 1.3 23 247-269 5-27 (167)
276 3ux8_A Excinuclease ABC, A sub 86.6 0.16 5.6E-06 56.1 0.8 28 239-266 342-369 (670)
277 1njg_A DNA polymerase III subu 86.5 0.2 6.7E-06 45.6 1.2 23 247-269 47-69 (250)
278 2nzj_A GTP-binding protein REM 86.5 0.2 6.9E-06 43.8 1.2 22 247-268 6-27 (175)
279 1tq4_A IIGP1, interferon-induc 86.4 0.17 5.9E-06 53.2 0.8 21 247-267 71-91 (413)
280 2iw3_A Elongation factor 3A; a 86.4 0.18 6.2E-06 58.6 1.1 36 237-272 691-726 (986)
281 1nks_A Adenylate kinase; therm 86.4 0.18 6.1E-06 45.2 0.8 23 247-269 3-25 (194)
282 1ni3_A YCHF GTPase, YCHF GTP-b 86.4 0.21 7.3E-06 52.1 1.5 27 241-267 16-42 (392)
283 2pt5_A Shikimate kinase, SK; a 86.3 0.25 8.6E-06 43.6 1.7 24 247-270 2-25 (168)
284 3syl_A Protein CBBX; photosynt 86.3 0.22 7.5E-06 48.6 1.4 25 245-269 67-91 (309)
285 1q3t_A Cytidylate kinase; nucl 86.2 0.24 8.1E-06 47.0 1.6 26 244-269 15-40 (236)
286 1uf9_A TT1252 protein; P-loop, 86.1 0.2 6.9E-06 45.5 1.0 22 247-268 10-31 (203)
287 1u8z_A RAS-related protein RAL 85.9 0.23 8E-06 42.7 1.3 22 247-268 6-27 (168)
288 2ce2_X GTPase HRAS; signaling 85.9 0.21 7.1E-06 42.8 0.9 22 247-268 5-26 (166)
289 1e6c_A Shikimate kinase; phosp 85.8 0.25 8.4E-06 43.8 1.4 24 247-270 4-27 (173)
290 2qgz_A Helicase loader, putati 85.8 0.24 8.1E-06 49.6 1.4 26 244-269 151-176 (308)
291 1z08_A RAS-related protein RAB 85.8 0.24 8.3E-06 43.0 1.3 22 247-268 8-29 (170)
292 1m7g_A Adenylylsulfate kinase; 85.8 0.22 7.7E-06 46.3 1.2 28 242-269 22-49 (211)
293 3g5u_A MCG1178, multidrug resi 85.7 0.3 1E-05 58.2 2.5 35 238-272 1052-1086(1284)
294 1ek0_A Protein (GTP-binding pr 85.7 0.24 8.3E-06 42.8 1.3 23 247-269 5-27 (170)
295 1um8_A ATP-dependent CLP prote 85.7 0.38 1.3E-05 48.8 2.9 28 245-272 72-99 (376)
296 2z0h_A DTMP kinase, thymidylat 85.6 0.23 7.9E-06 44.9 1.1 22 248-269 3-24 (197)
297 3q85_A GTP-binding protein REM 85.5 0.24 8.3E-06 43.0 1.2 22 247-268 4-25 (169)
298 2erx_A GTP-binding protein DI- 85.5 0.25 8.5E-06 42.8 1.3 22 247-268 5-26 (172)
299 4eaq_A DTMP kinase, thymidylat 85.5 0.24 8.2E-06 47.3 1.3 30 241-270 22-51 (229)
300 1c1y_A RAS-related protein RAP 85.5 0.25 8.6E-06 42.6 1.3 22 247-268 5-26 (167)
301 1zak_A Adenylate kinase; ATP:A 85.5 0.23 8E-06 46.3 1.2 27 244-270 4-30 (222)
302 2pbr_A DTMP kinase, thymidylat 85.5 0.25 8.6E-06 44.3 1.3 22 248-269 3-24 (195)
303 1ak2_A Adenylate kinase isoenz 85.5 0.28 9.5E-06 46.4 1.7 26 245-270 16-41 (233)
304 3g5u_A MCG1178, multidrug resi 85.4 0.28 9.7E-06 58.5 2.1 35 238-272 409-443 (1284)
305 2fna_A Conserved hypothetical 85.4 0.16 5.6E-06 49.8 0.0 33 246-279 31-63 (357)
306 3tlx_A Adenylate kinase 2; str 85.4 0.24 8.1E-06 47.6 1.2 26 244-269 28-53 (243)
307 2ce7_A Cell division protein F 85.4 0.32 1.1E-05 52.0 2.3 25 248-272 52-76 (476)
308 2c9o_A RUVB-like 1; hexameric 85.3 0.29 9.8E-06 51.5 1.8 29 245-273 63-91 (456)
309 1e4v_A Adenylate kinase; trans 85.3 0.26 8.8E-06 45.9 1.3 24 247-270 2-25 (214)
310 3q72_A GTP-binding protein RAD 85.2 0.21 7.2E-06 43.3 0.6 22 247-268 4-25 (166)
311 4b3f_X DNA-binding protein smu 85.1 0.74 2.5E-05 50.6 5.1 21 247-267 207-227 (646)
312 2bjv_A PSP operon transcriptio 85.0 0.58 2E-05 44.7 3.8 41 245-285 29-71 (265)
313 1sxj_E Activator 1 40 kDa subu 85.0 0.23 7.9E-06 49.4 0.9 28 241-268 32-59 (354)
314 1r2q_A RAS-related protein RAB 84.9 0.28 9.5E-06 42.4 1.3 22 247-268 8-29 (170)
315 1ypw_A Transitional endoplasmi 84.9 0.34 1.2E-05 55.0 2.3 50 242-291 508-564 (806)
316 1wms_A RAB-9, RAB9, RAS-relate 84.9 0.27 9.4E-06 43.0 1.3 23 247-269 9-31 (177)
317 2iut_A DNA translocase FTSK; n 84.9 11 0.00037 41.3 14.1 50 238-287 207-260 (574)
318 3r20_A Cytidylate kinase; stru 84.9 0.26 9E-06 47.8 1.2 24 247-270 11-34 (233)
319 1j8m_F SRP54, signal recogniti 84.9 1.7 5.8E-05 43.3 7.2 45 244-288 97-143 (297)
320 1r8s_A ADP-ribosylation factor 84.9 0.26 8.9E-06 42.6 1.1 22 247-268 2-23 (164)
321 1z0j_A RAB-22, RAS-related pro 84.8 0.28 9.6E-06 42.5 1.3 23 247-269 8-30 (170)
322 3j16_B RLI1P; ribosome recycli 84.8 0.34 1.1E-05 53.4 2.2 32 238-269 366-402 (608)
323 2ged_A SR-beta, signal recogni 84.8 0.28 9.5E-06 44.0 1.3 24 246-269 49-72 (193)
324 1g16_A RAS-related protein SEC 84.8 0.25 8.5E-06 42.8 0.9 23 247-269 5-27 (170)
325 1qvr_A CLPB protein; coiled co 84.8 0.7 2.4E-05 52.5 4.8 27 243-269 189-215 (854)
326 3bc1_A RAS-related protein RAB 84.7 0.28 9.7E-06 43.4 1.3 22 247-268 13-34 (195)
327 1p9r_A General secretion pathw 84.7 0.27 9.2E-06 51.7 1.3 34 235-269 158-191 (418)
328 1ky3_A GTP-binding protein YPT 84.6 0.29 9.8E-06 42.9 1.3 23 247-269 10-32 (182)
329 2hxs_A RAB-26, RAS-related pro 84.6 0.3 1E-05 42.8 1.4 22 247-268 8-29 (178)
330 4dsu_A GTPase KRAS, isoform 2B 84.5 0.29 1E-05 43.3 1.3 23 247-269 6-28 (189)
331 3tw8_B RAS-related protein RAB 84.5 0.27 9.3E-06 43.0 1.0 22 247-268 11-32 (181)
332 3sr0_A Adenylate kinase; phosp 84.4 0.29 9.9E-06 46.3 1.2 23 247-269 2-24 (206)
333 1upt_A ARL1, ADP-ribosylation 84.2 0.31 1.1E-05 42.3 1.3 23 246-268 8-30 (171)
334 1ega_A Protein (GTP-binding pr 84.1 0.26 8.9E-06 49.0 0.8 25 244-268 7-31 (301)
335 2fn4_A P23, RAS-related protei 84.1 0.28 9.5E-06 43.0 0.9 22 247-268 11-32 (181)
336 3clv_A RAB5 protein, putative; 83.9 0.32 1.1E-05 43.2 1.3 22 247-268 9-30 (208)
337 3ihw_A Centg3; RAS, centaurin, 83.9 0.33 1.1E-05 43.9 1.3 23 247-269 22-44 (184)
338 1z0f_A RAB14, member RAS oncog 83.9 0.33 1.1E-05 42.4 1.3 23 247-269 17-39 (179)
339 3ux8_A Excinuclease ABC, A sub 83.9 0.28 9.7E-06 54.2 1.1 24 239-262 38-61 (670)
340 1m2o_B GTP-binding protein SAR 83.8 0.3 1E-05 44.3 1.0 26 244-269 22-47 (190)
341 2zan_A Vacuolar protein sortin 83.8 0.49 1.7E-05 49.7 2.8 24 246-269 168-191 (444)
342 3euj_A Chromosome partition pr 83.8 0.34 1.2E-05 52.0 1.6 29 239-268 24-52 (483)
343 1mh1_A RAC1; GTP-binding, GTPa 83.7 0.34 1.1E-05 42.7 1.3 22 247-268 7-28 (186)
344 3con_A GTPase NRAS; structural 83.6 0.34 1.2E-05 43.3 1.3 23 247-269 23-45 (190)
345 2cxx_A Probable GTP-binding pr 83.6 0.29 9.8E-06 43.5 0.8 22 247-268 3-24 (190)
346 2qen_A Walker-type ATPase; unk 83.6 0.48 1.6E-05 46.3 2.5 32 245-279 31-62 (350)
347 3a4m_A L-seryl-tRNA(SEC) kinas 83.6 0.48 1.6E-05 45.8 2.5 25 244-268 3-27 (260)
348 2iwr_A Centaurin gamma 1; ANK 83.5 0.29 9.8E-06 43.2 0.7 23 247-269 9-31 (178)
349 3cr8_A Sulfate adenylyltranfer 83.5 0.2 7E-06 54.5 -0.3 29 241-269 365-393 (552)
350 2a9k_A RAS-related protein RAL 83.4 0.35 1.2E-05 42.6 1.3 22 247-268 20-41 (187)
351 2oil_A CATX-8, RAS-related pro 83.4 0.35 1.2E-05 43.4 1.3 23 247-269 27-49 (193)
352 2efe_B Small GTP-binding prote 83.4 0.35 1.2E-05 42.5 1.3 22 247-268 14-35 (181)
353 3pqc_A Probable GTP-binding pr 83.3 0.3 1E-05 43.4 0.9 23 247-269 25-47 (195)
354 2lkc_A Translation initiation 83.3 0.41 1.4E-05 41.9 1.7 25 244-268 7-31 (178)
355 4fcw_A Chaperone protein CLPB; 83.3 0.35 1.2E-05 47.1 1.3 36 246-281 48-85 (311)
356 3kkq_A RAS-related protein M-R 83.2 0.36 1.2E-05 42.7 1.3 22 247-268 20-41 (183)
357 1g8p_A Magnesium-chelatase 38 83.1 0.35 1.2E-05 47.8 1.3 26 245-270 45-70 (350)
358 2f1r_A Molybdopterin-guanine d 83.1 0.17 5.8E-06 46.6 -0.9 24 246-269 3-26 (171)
359 1svi_A GTP-binding protein YSX 83.1 0.32 1.1E-05 43.6 0.9 23 246-268 24-46 (195)
360 2y8e_A RAB-protein 6, GH09086P 83.0 0.33 1.1E-05 42.4 0.9 22 247-268 16-37 (179)
361 3zvl_A Bifunctional polynucleo 83.0 1.7 5.9E-05 45.1 6.6 26 244-269 257-282 (416)
362 2g6b_A RAS-related protein RAB 83.0 0.37 1.3E-05 42.3 1.3 23 247-269 12-34 (180)
363 1ex7_A Guanylate kinase; subst 83.0 0.35 1.2E-05 45.3 1.1 22 248-269 4-25 (186)
364 3gmt_A Adenylate kinase; ssgci 82.9 0.42 1.4E-05 46.4 1.7 24 246-269 9-32 (230)
365 1qf9_A UMP/CMP kinase, protein 82.9 0.34 1.2E-05 43.3 1.0 23 247-269 8-30 (194)
366 2qmh_A HPR kinase/phosphorylas 82.9 0.39 1.3E-05 46.0 1.4 26 244-269 33-58 (205)
367 1m7b_A RND3/RHOE small GTP-bin 82.9 0.33 1.1E-05 43.4 0.9 22 247-268 9-30 (184)
368 2grj_A Dephospho-COA kinase; T 82.8 0.38 1.3E-05 44.9 1.4 22 247-268 14-35 (192)
369 1uj2_A Uridine-cytidine kinase 82.8 0.36 1.2E-05 46.2 1.2 23 247-269 24-46 (252)
370 3bwd_D RAC-like GTP-binding pr 82.8 0.38 1.3E-05 42.3 1.3 24 246-269 9-32 (182)
371 3kl4_A SRP54, signal recogniti 82.7 1.1 3.6E-05 47.5 4.9 25 244-268 96-120 (433)
372 3tqc_A Pantothenate kinase; bi 82.7 0.36 1.2E-05 49.0 1.2 22 247-268 94-115 (321)
373 3ake_A Cytidylate kinase; CMP 82.7 0.38 1.3E-05 43.8 1.3 23 247-269 4-26 (208)
374 2px0_A Flagellar biosynthesis 82.7 0.35 1.2E-05 48.3 1.1 26 243-268 103-128 (296)
375 3tkl_A RAS-related protein RAB 82.6 0.39 1.3E-05 42.9 1.3 22 247-268 18-39 (196)
376 3k1j_A LON protease, ATP-depen 82.6 0.44 1.5E-05 52.0 1.9 30 241-270 56-85 (604)
377 3tqf_A HPR(Ser) kinase; transf 82.5 0.6 2E-05 43.9 2.5 37 244-280 15-55 (181)
378 1nrj_B SR-beta, signal recogni 82.5 0.39 1.4E-05 44.0 1.3 23 247-269 14-36 (218)
379 3lxx_A GTPase IMAP family memb 82.5 0.39 1.3E-05 45.3 1.3 23 247-269 31-53 (239)
380 2gf9_A RAS-related protein RAB 82.4 0.4 1.4E-05 42.9 1.3 23 247-269 24-46 (189)
381 4f4c_A Multidrug resistance pr 82.4 0.43 1.5E-05 57.0 1.9 33 239-271 438-470 (1321)
382 1sxj_A Activator 1 95 kDa subu 82.4 0.59 2E-05 49.9 2.8 28 245-272 77-104 (516)
383 1sxj_D Activator 1 41 kDa subu 82.4 0.33 1.1E-05 48.0 0.7 23 246-268 59-81 (353)
384 1tue_A Replication protein E1; 82.4 0.38 1.3E-05 46.3 1.2 26 244-269 57-82 (212)
385 3c5c_A RAS-like protein 12; GD 82.3 0.4 1.4E-05 43.2 1.3 23 247-269 23-45 (187)
386 4bas_A ADP-ribosylation factor 82.3 0.38 1.3E-05 43.1 1.1 22 247-268 19-40 (199)
387 1sxj_C Activator 1 40 kDa subu 82.3 0.4 1.4E-05 47.9 1.4 22 248-269 49-70 (340)
388 2bme_A RAB4A, RAS-related prot 82.3 0.36 1.2E-05 42.7 0.9 22 247-268 12-33 (186)
389 2bov_A RAla, RAS-related prote 82.3 0.41 1.4E-05 43.1 1.3 22 247-268 16-37 (206)
390 1fzq_A ADP-ribosylation factor 82.3 0.33 1.1E-05 43.6 0.6 22 247-268 18-39 (181)
391 2www_A Methylmalonic aciduria 82.2 0.38 1.3E-05 49.0 1.2 24 245-268 74-97 (349)
392 1ksh_A ARF-like protein 2; sma 82.2 0.41 1.4E-05 42.6 1.2 24 246-269 19-42 (186)
393 1vg8_A RAS-related protein RAB 82.1 0.41 1.4E-05 43.2 1.3 23 247-269 10-32 (207)
394 1vht_A Dephospho-COA kinase; s 82.0 0.42 1.4E-05 44.4 1.3 22 246-267 5-26 (218)
395 3nbx_X ATPase RAVA; AAA+ ATPas 82.0 0.62 2.1E-05 50.1 2.8 38 242-279 38-76 (500)
396 1udx_A The GTP-binding protein 82.0 0.37 1.3E-05 50.6 1.0 33 236-268 148-180 (416)
397 2xb4_A Adenylate kinase; ATP-b 81.8 0.41 1.4E-05 45.1 1.1 24 247-270 2-25 (223)
398 3reg_A RHO-like small GTPase; 81.8 0.44 1.5E-05 42.9 1.3 22 247-268 25-46 (194)
399 1zd9_A ADP-ribosylation factor 81.7 0.44 1.5E-05 42.8 1.3 22 247-268 24-45 (188)
400 1moz_A ARL1, ADP-ribosylation 81.7 0.3 1E-05 43.1 0.2 25 244-268 17-41 (183)
401 1zbd_A Rabphilin-3A; G protein 81.6 0.45 1.5E-05 43.0 1.3 23 247-269 10-32 (203)
402 2ohf_A Protein OLA1, GTP-bindi 81.6 0.49 1.7E-05 49.5 1.7 27 242-268 19-45 (396)
403 3t5g_A GTP-binding protein RHE 81.5 0.4 1.4E-05 42.3 0.9 22 247-268 8-29 (181)
404 1z06_A RAS-related protein RAB 81.5 0.45 1.5E-05 42.6 1.3 22 247-268 22-43 (189)
405 3szr_A Interferon-induced GTP- 81.4 0.37 1.3E-05 52.9 0.8 35 235-269 30-69 (608)
406 1g41_A Heat shock protein HSLU 81.3 0.72 2.5E-05 49.0 2.9 30 246-275 51-80 (444)
407 1f6b_A SAR1; gtpases, N-termin 81.3 0.34 1.2E-05 44.3 0.3 23 246-268 26-48 (198)
408 1c9k_A COBU, adenosylcobinamid 81.2 0.66 2.2E-05 43.4 2.3 42 248-291 2-44 (180)
409 2a5j_A RAS-related protein RAB 81.2 0.47 1.6E-05 42.6 1.3 23 247-269 23-45 (191)
410 2atv_A RERG, RAS-like estrogen 81.2 0.47 1.6E-05 42.8 1.3 22 247-268 30-51 (196)
411 3dz8_A RAS-related protein RAB 81.2 0.39 1.3E-05 43.2 0.7 23 247-269 25-47 (191)
412 1x3s_A RAS-related protein RAB 81.1 0.48 1.6E-05 42.2 1.3 22 247-268 17-38 (195)
413 2fh5_B SR-beta, signal recogni 81.0 0.48 1.7E-05 43.3 1.3 23 247-269 9-31 (214)
414 2h17_A ADP-ribosylation factor 80.9 0.39 1.3E-05 42.8 0.6 23 247-269 23-45 (181)
415 2orw_A Thymidine kinase; TMTK, 80.9 0.45 1.5E-05 43.9 1.0 25 244-268 2-26 (184)
416 2p5s_A RAS and EF-hand domain 80.9 0.49 1.7E-05 42.9 1.3 23 247-269 30-52 (199)
417 2fg5_A RAB-22B, RAS-related pr 80.9 0.43 1.5E-05 43.0 0.9 23 247-269 25-47 (192)
418 3t1o_A Gliding protein MGLA; G 80.8 0.5 1.7E-05 41.9 1.3 22 247-268 16-37 (198)
419 1vma_A Cell division protein F 80.7 0.5 1.7E-05 47.5 1.4 40 242-281 101-142 (306)
420 2cjw_A GTP-binding protein GEM 80.6 0.5 1.7E-05 43.0 1.2 22 247-268 8-29 (192)
421 3umf_A Adenylate kinase; rossm 80.5 0.51 1.8E-05 45.2 1.3 22 248-269 32-53 (217)
422 2h57_A ADP-ribosylation factor 80.4 0.4 1.4E-05 43.0 0.5 23 247-269 23-45 (190)
423 3oes_A GTPase rhebl1; small GT 80.3 0.46 1.6E-05 43.1 0.9 23 247-269 26-48 (201)
424 1zj6_A ADP-ribosylation factor 80.3 0.47 1.6E-05 42.4 0.9 24 246-269 17-40 (187)
425 3cbq_A GTP-binding protein REM 80.2 0.45 1.5E-05 43.4 0.8 21 247-267 25-45 (195)
426 1gtv_A TMK, thymidylate kinase 80.2 0.24 8.1E-06 45.5 -1.1 22 248-269 3-24 (214)
427 2fu5_C RAS-related protein RAB 80.2 0.38 1.3E-05 42.6 0.3 22 247-268 10-31 (183)
428 2f7s_A C25KG, RAS-related prot 80.0 0.53 1.8E-05 43.1 1.2 23 247-269 27-49 (217)
429 2ffh_A Protein (FFH); SRP54, s 80.0 4.2 0.00014 42.8 8.2 25 244-268 97-121 (425)
430 3k53_A Ferrous iron transport 79.8 0.49 1.7E-05 45.8 1.0 22 247-268 5-26 (271)
431 2gf0_A GTP-binding protein DI- 79.6 0.5 1.7E-05 42.3 0.9 22 247-268 10-31 (199)
432 2il1_A RAB12; G-protein, GDP, 79.6 0.51 1.7E-05 42.6 0.9 22 247-268 28-49 (192)
433 2q3h_A RAS homolog gene family 79.6 0.55 1.9E-05 42.4 1.2 22 247-268 22-43 (201)
434 2ew1_A RAS-related protein RAB 79.5 0.51 1.7E-05 43.5 0.9 22 247-268 28-49 (201)
435 1iqp_A RFCS; clamp loader, ext 79.5 0.6 2E-05 45.4 1.5 27 243-269 44-70 (327)
436 2bcg_Y Protein YP2, GTP-bindin 79.4 0.52 1.8E-05 42.8 0.9 22 247-268 10-31 (206)
437 2o52_A RAS-related protein RAB 79.4 0.5 1.7E-05 43.1 0.8 22 247-268 27-48 (200)
438 3cph_A RAS-related protein SEC 79.3 0.59 2E-05 42.4 1.3 22 247-268 22-43 (213)
439 1gwn_A RHO-related GTP-binding 79.1 0.53 1.8E-05 43.5 0.9 22 247-268 30-51 (205)
440 2qu8_A Putative nucleolar GTP- 79.1 0.59 2E-05 43.6 1.2 22 247-268 31-52 (228)
441 1a7j_A Phosphoribulokinase; tr 79.0 0.55 1.9E-05 46.6 1.0 23 246-268 6-28 (290)
442 2qnr_A Septin-2, protein NEDD5 79.0 0.46 1.6E-05 47.3 0.5 21 248-268 21-41 (301)
443 2atx_A Small GTP binding prote 78.9 0.54 1.9E-05 42.1 0.9 22 247-268 20-41 (194)
444 1ojl_A Transcriptional regulat 78.9 0.99 3.4E-05 44.8 2.9 43 244-286 24-68 (304)
445 4gzl_A RAS-related C3 botulinu 78.7 0.58 2E-05 42.8 1.0 22 247-268 32-53 (204)
446 2b6h_A ADP-ribosylation factor 78.6 0.51 1.7E-05 42.8 0.6 23 247-269 31-53 (192)
447 1np6_A Molybdopterin-guanine d 78.5 0.62 2.1E-05 42.9 1.1 22 247-268 8-29 (174)
448 2chq_A Replication factor C sm 78.3 0.62 2.1E-05 45.1 1.2 27 243-269 36-62 (319)
449 2ga8_A Hypothetical 39.9 kDa p 78.3 0.73 2.5E-05 47.6 1.8 27 242-268 19-47 (359)
450 3q3j_B RHO-related GTP-binding 78.2 0.66 2.3E-05 42.9 1.3 22 247-268 29-50 (214)
451 2fv8_A H6, RHO-related GTP-bin 78.2 0.59 2E-05 42.7 0.9 23 247-269 27-49 (207)
452 2yc2_C IFT27, small RAB-relate 78.0 0.44 1.5E-05 42.9 -0.0 22 247-268 22-43 (208)
453 4akg_A Glutathione S-transfera 78.0 11 0.00038 48.4 12.4 138 243-432 1265-1410(2695)
454 3a8t_A Adenylate isopentenyltr 77.7 0.7 2.4E-05 47.4 1.4 27 244-270 39-65 (339)
455 2hf9_A Probable hydrogenase ni 77.6 0.59 2E-05 43.2 0.7 24 246-269 39-62 (226)
456 2gco_A H9, RHO-related GTP-bin 77.5 0.64 2.2E-05 42.3 0.9 22 247-268 27-48 (201)
457 2h92_A Cytidylate kinase; ross 77.4 0.91 3.1E-05 41.9 2.0 26 245-270 3-28 (219)
458 3upu_A ATP-dependent DNA helic 77.3 1 3.5E-05 47.2 2.5 40 247-286 47-90 (459)
459 2hup_A RAS-related protein RAB 77.0 0.66 2.3E-05 42.3 0.9 23 247-269 31-53 (201)
460 3lxw_A GTPase IMAP family memb 77.0 0.78 2.7E-05 44.0 1.4 23 247-269 23-45 (247)
461 2j0v_A RAC-like GTP-binding pr 76.9 0.67 2.3E-05 42.2 0.9 22 247-268 11-32 (212)
462 2j1l_A RHO-related GTP-binding 76.8 0.65 2.2E-05 42.9 0.8 22 247-268 36-57 (214)
463 3th5_A RAS-related C3 botulinu 78.5 0.5 1.7E-05 42.9 0.0 23 246-268 31-53 (204)
464 3thx_A DNA mismatch repair pro 76.8 0.79 2.7E-05 53.0 1.6 31 236-266 653-683 (934)
465 1qhl_A Protein (cell division 76.7 0.4 1.4E-05 46.2 -0.7 23 246-268 28-50 (227)
466 4djt_A GTP-binding nuclear pro 76.7 0.48 1.6E-05 43.4 -0.2 22 247-268 13-34 (218)
467 2aka_B Dynamin-1; fusion prote 76.6 0.63 2.2E-05 45.0 0.6 24 246-269 27-50 (299)
468 4aby_A DNA repair protein RECN 76.5 0.34 1.2E-05 49.6 -1.4 33 232-265 47-80 (415)
469 1wb9_A DNA mismatch repair pro 76.4 0.84 2.9E-05 51.9 1.7 25 243-267 605-629 (800)
470 1sxj_B Activator 1 37 kDa subu 76.4 0.86 2.9E-05 44.1 1.6 26 244-269 41-66 (323)
471 2xtp_A GTPase IMAP family memb 76.4 0.71 2.4E-05 44.0 1.0 22 247-268 24-45 (260)
472 2x77_A ADP-ribosylation factor 76.3 0.55 1.9E-05 41.9 0.2 23 246-268 23-45 (189)
473 1xjc_A MOBB protein homolog; s 76.3 0.77 2.6E-05 42.4 1.1 22 247-268 6-27 (169)
474 3cpj_B GTP-binding protein YPT 76.2 0.82 2.8E-05 42.3 1.3 23 247-269 15-37 (223)
475 2qag_C Septin-7; cell cycle, c 76.1 0.78 2.7E-05 48.2 1.2 20 249-268 35-54 (418)
476 4dkx_A RAS-related protein RAB 76.0 0.83 2.8E-05 43.2 1.3 23 247-269 15-37 (216)
477 3llu_A RAS-related GTP-binding 76.0 0.73 2.5E-05 41.7 0.9 22 247-268 22-43 (196)
478 3pxg_A Negative regulator of g 75.8 0.97 3.3E-05 47.7 1.9 27 243-269 199-225 (468)
479 3b1v_A Ferrous iron uptake tra 75.7 0.82 2.8E-05 44.9 1.2 22 247-268 5-26 (272)
480 2wsm_A Hydrogenase expression/ 75.7 0.72 2.5E-05 42.4 0.7 24 246-269 31-54 (221)
481 2g3y_A GTP-binding protein GEM 75.6 0.84 2.9E-05 42.9 1.2 22 247-268 39-60 (211)
482 3vkg_A Dynein heavy chain, cyt 75.5 14 0.00047 48.2 12.3 137 243-432 1302-1448(3245)
483 2f6r_A COA synthase, bifunctio 75.4 0.76 2.6E-05 45.1 0.9 21 247-267 77-97 (281)
484 1ko7_A HPR kinase/phosphatase; 75.4 1.2 4.1E-05 45.2 2.4 38 244-281 143-184 (314)
485 3crm_A TRNA delta(2)-isopenten 75.4 0.85 2.9E-05 46.4 1.3 24 247-270 7-30 (323)
486 1mky_A Probable GTP-binding pr 74.9 0.89 3E-05 47.5 1.3 23 246-268 181-203 (439)
487 3d3q_A TRNA delta(2)-isopenten 74.7 0.89 3E-05 46.6 1.2 24 247-270 9-32 (340)
488 3l0i_B RAS-related protein RAB 74.5 0.53 1.8E-05 42.7 -0.5 22 247-268 35-56 (199)
489 1ltq_A Polynucleotide kinase; 74.5 0.93 3.2E-05 44.1 1.2 22 247-268 4-25 (301)
490 1wf3_A GTP-binding protein; GT 74.4 0.8 2.8E-05 45.6 0.8 24 245-268 7-30 (301)
491 3thx_B DNA mismatch repair pro 74.3 0.71 2.4E-05 53.3 0.4 30 237-266 665-694 (918)
492 2r8r_A Sensor protein; KDPD, P 74.2 2.4 8.2E-05 41.1 4.0 45 247-292 8-56 (228)
493 3a1s_A Iron(II) transport prot 74.1 0.98 3.3E-05 43.8 1.3 22 247-268 7-28 (258)
494 2ocp_A DGK, deoxyguanosine kin 73.9 0.82 2.8E-05 43.3 0.6 27 244-270 1-27 (241)
495 1p5z_B DCK, deoxycytidine kina 73.8 0.81 2.8E-05 44.0 0.6 27 244-270 23-49 (263)
496 4dhe_A Probable GTP-binding pr 73.3 0.49 1.7E-05 43.5 -1.1 24 246-269 30-53 (223)
497 4ag6_A VIRB4 ATPase, type IV s 72.8 1.8 6.1E-05 44.2 2.9 25 244-268 34-58 (392)
498 3iev_A GTP-binding protein ERA 72.7 1.1 3.6E-05 44.7 1.2 23 246-268 11-33 (308)
499 1jal_A YCHF protein; nucleotid 72.7 1.2 4E-05 46.1 1.5 24 245-268 2-25 (363)
500 3exa_A TRNA delta(2)-isopenten 72.5 1.1 3.9E-05 45.6 1.3 24 247-270 5-28 (322)
No 1
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=100.00 E-value=4.6e-128 Score=1042.59 Aligned_cols=476 Identities=53% Similarity=0.932 Sum_probs=459.7
Q ss_pred eeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccccc
Q 010179 21 YGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (516)
Q Consensus 21 ~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLGr 100 (516)
.|+|++|+|++++++|+.++++||+|+|+++++.|||+++++|++.+|+|++|+||++|++|++||++++|+|||+||||
T Consensus 10 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGr 89 (600)
T 3vr4_A 10 IGKIIKVSGPLVMAENMSEASIQDMCLVGDLGVIGEIIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQ 89 (600)
T ss_dssp CEEEEEEETTEEEEESCTTSCTTCEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTC
T ss_pred ceEEEEEECcEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhh
Confidence 69999999999999999889999999997667999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceEE
Q 010179 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTY 180 (516)
Q Consensus 101 V~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~~ 180 (516)
||||+|||||++++..++.|+++|++.++++.++.|+|.|. +++||.|.+|||+|+|+|+.+++|++|+||+..|+|+|
T Consensus 90 V~DglGrPlD~~~~~~g~~~~~~g~~~~~l~~~~~w~f~p~-~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~ 168 (600)
T 3vr4_A 90 MFDGIQRPLDTFMEVTQSNFLGRGVQLPALDHEKQWWFEAT-IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQK 168 (600)
T ss_dssp EECTTCCBHHHHHHHHCSSBCCTTCCCCSSCSSCCEEEEEC-SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEE
T ss_pred hhCcCCCcccccccccCccccccCCcCCCCCcccccccCcc-cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEE
Confidence 99999999999887777789999999999999999999997 99999999999999999999999999999999999999
Q ss_pred ecCCCCccccceEEEEEE-cCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCch
Q 010179 181 VAPAGQYSLKDTVLELEF-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKT 259 (516)
Q Consensus 181 i~~~g~~~~~~~v~~~~~-~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT 259 (516)
| ++|+|+++|+|++++. +|. ++++|.|+||++.|+|+.+|.++++||+||||+||+|+|||||||++|||++|+|||
T Consensus 169 i-~~g~~~v~~~v~~i~~~~g~-~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifgg~g~GKT 246 (600)
T 3vr4_A 169 I-ESGSFTIDDPICVIETEQGL-KELTMMQKWPVRRGRPIKQKLNPDVPMITGQRVIDTFFPVTKGGAAAVPGPFGAGKT 246 (600)
T ss_dssp E-CCEEECTTSCCEEEEETTEE-EEECSCEEEETTSCCCCSEEECCCSBCCCCCHHHHHHSCCBTTCEEEEECCTTSCHH
T ss_pred e-cCCcceeceeEEEEeccCCc-ccccccccccccCCCchhhccCCCceecccchhhhccCCccCCCEEeeecCCCccHH
Confidence 9 9999999999999995 566 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHH
Q 010179 260 VISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEY 339 (516)
Q Consensus 260 ~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEy 339 (516)
+|+++|++|+++|++||++||||++|++||+++|++++++. .++++|+||++|+||||+||.+|++++|+|+|+|||
T Consensus 247 ~L~~~ia~~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~---~G~~~m~rtvvV~~tsd~p~~~R~~~~~~altiAEy 323 (600)
T 3vr4_A 247 VVQHQIAKWSDVDLVVYVGCGERGNEMTDVVNEFPELIDPN---TGESLMERTVLIANTSNMPVAAREASIYTGITIAEY 323 (600)
T ss_dssp HHHHHHHHHSSCSEEEEEEEEECHHHHHHHHHHTTTCBCTT---TCSBGGGGEEEEEEETTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988865 677899999999999999999999999999999999
Q ss_pred HHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCC
Q 010179 340 FRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGD 419 (516)
Q Consensus 340 frd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D 419 (516)
|||+|+||||++||+||||+|+||||+++||||+++|||+|++++|++||||||+++++++.+++||||++++|++|+||
T Consensus 324 frd~G~dVLl~~Ds~tR~A~A~rEiS~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gdD 403 (600)
T 3vr4_A 324 FRDMGYDVAIMADSTSRWAEALREMSGRLEEMPGDEGYPAYLGSRLAEYYERSGRVIALGSDQREGSITAISAVSPSGGD 403 (600)
T ss_dssp HHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCBCGGGCBTTHHHHHHHHHTTSEEEECSSTTCCEEEEEEEEEECCSSSC
T ss_pred HHHcCCCEEEEecchHHHHHHHHHHHhccCCCCccccCCchhhhHHHHHHHhhccccccCCCCCCcceEEEEEEECCCCC
Confidence 99999999999999999999999999999999999999999999999999999999877654578999999999999999
Q ss_pred CCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-
Q 010179 420 FSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ- 497 (516)
Q Consensus 420 ~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~- 497 (516)
++|||++++++|+|+||+|||+||++||||||||+.|+||+++.+++||.. ++++|++++++++++|++|+|+++|++
T Consensus 404 ~tdPi~~~t~~i~dg~ivLsr~La~~giyPAId~l~S~SR~~~~l~~~~~~~~~~~h~~~a~~~~~~la~~~el~~ii~i 483 (600)
T 3vr4_A 404 ISEPVTQNTLRVVKVFWGLDSSLAQKRHFPSINWIQSYSLYSTEVGRYMDQILQQDWSDMVTEGMRILQEEEQLNEIVRL 483 (600)
T ss_dssp TTSHHHHHHHTTCCEECCBCHHHHTTTCSSCBCTTTCEETTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhhhhhhccEEEEEhhhHHhCCCCCccCcccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999855 689999999999999999999999999
Q ss_pred cCCCc
Q 010179 498 VGYLW 502 (516)
Q Consensus 498 ~G~~~ 502 (516)
+|+|.
T Consensus 484 ~G~d~ 488 (600)
T 3vr4_A 484 VGIDS 488 (600)
T ss_dssp TCGGG
T ss_pred cCCcc
Confidence 89984
No 2
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=100.00 E-value=4.4e-129 Score=1047.13 Aligned_cols=479 Identities=56% Similarity=0.983 Sum_probs=391.1
Q ss_pred eeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCccccc
Q 010179 20 EYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILG 99 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLG 99 (516)
..|+|++|+|++++++|+.++++||+|+|+++++.|||++|++|++.+|+|++++||++|++|++||++++|+|||+|||
T Consensus 3 ~~G~V~~V~G~iv~~~g~~~~~~gElv~v~~~~l~geVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLG 82 (588)
T 3mfy_A 3 AKGRIIRVTGPLVVADGMKGAKMYEVVRVGELGLIGEIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLT 82 (588)
T ss_dssp ----------------------------------------------------------CCCCCSSSSSCCEEEESTTCTT
T ss_pred ceeEEEEEECCEEEEEcCCCCccCCEEEEcCCceEEEEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHh
Confidence 46999999999999999988999999999766799999999999999999999999999999999999999999999999
Q ss_pred ccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceE
Q 010179 100 NIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVT 179 (516)
Q Consensus 100 rV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~ 179 (516)
|||||+|||||++++..++ |+++|++++++++++.|+|.|. +++||.|.+|||+|+|+|+.+++|++|+||+..|+|+
T Consensus 83 rV~DglgrPLd~~~~~~g~-~~~~g~~~~~l~~~~~w~f~p~-~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~ 160 (588)
T 3mfy_A 83 SIYDGIQRPLEVIREKTGD-FIARGVTAPALPRDKKWHFIPK-AKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIV 160 (588)
T ss_dssp CEEETTCCSSSSCCCCCSS-SCCCCCCCCSSCSSCCEEEEEC-CCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEE
T ss_pred hccCCCCCcccCccccccc-ccccccccCccccccccccccc-cccCcccccCceEEEEecccceeeeeecCCCCCceEE
Confidence 9999999999999888776 9999999999999999999996 9999999999999999999999999999999999999
Q ss_pred EecCCCCccccceEEEEEE-cCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCc
Q 010179 180 YVAPAGQYSLKDTVLELEF-QGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGK 258 (516)
Q Consensus 180 ~i~~~g~~~~~~~v~~~~~-~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GK 258 (516)
+|+++|+|+++|+|++++. +|..++++|.|+||++.|+|+.+|+++++||+||||+||+|+|||||||++|||++|+||
T Consensus 161 ~i~~~g~~~v~~~i~~i~~~~g~~~~i~~~~~wpv~~~~p~~~R~~~~epl~TGirvID~l~PigkGqr~~I~g~~g~GK 240 (588)
T 3mfy_A 161 EIAEEGDYTIEEVIAKVKTPSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKGGTAAIPGPAGSGK 240 (588)
T ss_dssp EECCSEEECTTSEEEEEECTTCCEEEEESCEEEETTSCCCCSEEECSCSEECCSCHHHHHHSCEETTCEEEECSCCSHHH
T ss_pred EeccCCcccccceEEEEecCCCccccccccccccccCCCchhhhccCCcccccCcchhhccCCcccCCeEEeecCCCCCH
Confidence 9999999999999999994 788899999999999999999999999999999999999999999999999999999999
Q ss_pred hHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHH
Q 010179 259 TVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAE 338 (516)
Q Consensus 259 T~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAE 338 (516)
|+|+++||+++++|++||++||||++||+||+++|++++++. .++++|+||++|++|||+||.+|++++|+|+|+||
T Consensus 241 T~L~~~ia~~~~~~~~V~~~iGER~~Ev~e~~~~~~el~d~~---~g~~~m~rtvvV~~tsd~p~~~r~~~~~~a~tiAE 317 (588)
T 3mfy_A 241 TVTQHQLAKWSDAQVVIYIGCGERGNEMTDVLEEFPKLKDPK---TGKPLMERTVLIANTSNMPVAAREASIYTGITIAE 317 (588)
T ss_dssp HHHHHHHHHHSSCSEEEEEECCSSSSHHHHHHHHTTTCEETT---TTEEGGGGEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHHhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987765 56789999999999999999999999999999999
Q ss_pred HHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCC
Q 010179 339 YFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGG 418 (516)
Q Consensus 339 yfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~ 418 (516)
||||+|+||||++||+||||+|+||||+++||||+++|||||++++|++||||||+++++++.+++||||++++|++|+|
T Consensus 318 yfrd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~GYp~~l~s~L~~l~ERAg~~~~~~~~~~~GSIT~i~~v~~~gd 397 (588)
T 3mfy_A 318 YFRDMGYDVALMADSTSRWAEALREISGRLEEMPGEEGYPAYLASKLAEFYERAGRVVTLGSDYRVGSVSVIGAVSPPGG 397 (588)
T ss_dssp HHHHTTCEEEEEEECTTTCCCCC----------------CCHHHHHHHHHHTTCEEEECSSSSCCEEEEEEEEECCCTTS
T ss_pred HHHHcCCCEEEeecchHHHHHHHHHHHHhccCCCccccCCchhhhhhhHHHhccccccccCCCCCCcceEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999987765557899999999999999
Q ss_pred CCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc-CCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 419 DFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 419 D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
|++|||++++++|+|+||+|||+||++||||||||+.|+||+++.+++||.. ++++|++++++++++|++|+|+++|++
T Consensus 398 D~sdpi~~~~~~i~dg~i~Lsr~La~~g~yPAId~l~S~SR~~~~i~~~~~~~~~~~h~~~a~~~~~~La~~~el~~ii~ 477 (588)
T 3mfy_A 398 DFSEPVVQNTLRVVKVFWALDADLARRRHFPAINWLTSYSLYVDAVKDWWHKNIDPEWKAMRDKAMALLQKESELQEIVR 477 (588)
T ss_dssp CSSCSHHHHHHHHCSEECCBCHHHHHTTCSSCBCTTTCEETTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHhccCeeecCHHHHhCCCCCCcCcccchhhhcccccchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999854 799999999999999999999999999
Q ss_pred -cCCCcc
Q 010179 498 -VGYLWS 503 (516)
Q Consensus 498 -~G~~~~ 503 (516)
+|+|.+
T Consensus 478 i~G~d~L 484 (588)
T 3mfy_A 478 IVGPDAL 484 (588)
T ss_dssp HHCSTTC
T ss_pred hcCCccC
Confidence 999953
No 3
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=100.00 E-value=2e-126 Score=1026.32 Aligned_cols=471 Identities=58% Similarity=0.996 Sum_probs=453.5
Q ss_pred eeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceeecCcccccc
Q 010179 21 YGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGN 100 (516)
Q Consensus 21 ~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpvG~gLLGr 100 (516)
.|+|++|+|++++++|+.++++||+|+|+++++.|||+++++|++.+|+|++|+||++|++|++||++++|||||+||||
T Consensus 3 ~G~V~~V~G~vv~v~g~~~~~~gE~v~v~~~~l~gEVi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGr 82 (578)
T 3gqb_A 3 QGVIQKIAGPAVIAKGMLGARMYDISKVGEEGLVGEIIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNG 82 (578)
T ss_dssp EEEEEEEETTEEEEESCTTCCTTEEEEETTTTEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTC
T ss_pred eeEEEEEECCEEEEEcCCCCccCCEEEECCCcEEEEEEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhh
Confidence 69999999999999999889999999997667999999999999999999999999999999999999999999999999
Q ss_pred cccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCCCCceEE
Q 010179 101 IFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDAMGKVTY 180 (516)
Q Consensus 101 V~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~~g~v~~ 180 (516)
||||+|||||+.++..++ |+++|++.++++.++.|+|+|. +++||.|.+|||+|.++|+..+ |++|+||+..|+|++
T Consensus 83 V~DglG~PlD~~~~~~g~-~~~~g~~~~~l~~~~~w~f~p~-~~~g~~v~~G~i~g~v~e~~~i-h~i~~pp~~~g~v~~ 159 (578)
T 3gqb_A 83 IYDGIQRPLERIREKTGI-YITRGVVVHALDREKKWAWTPM-VKPGDEVRGGMVLGTVPEFGFT-HKILVPPDVRGRVKE 159 (578)
T ss_dssp EECTTSCBHHHHHHHHCS-BCCTTCCCCSSCSSSCEEEEEC-CCTTCEECTTCEEEEEEETTEE-EEEECCTTCCEEEEE
T ss_pred hhCcCCCcccccccccCc-cccccccCCCcCcccccccccc-cccCccccccceeeeecccccc-eecccCCCcCceeEE
Confidence 999999999998766665 9999999999999999999997 9999999999999999999888 999999999999999
Q ss_pred ecCCCCccccceEEEEEEcCeeeeeeccccccccCCCCcccccCCCccccccccccccccccccCCccccCCCCCCCchH
Q 010179 181 VAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTV 260 (516)
Q Consensus 181 i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~ 260 (516)
|+++|+||++|+|++++ +| .+++|.|+||+|.|+|+.+|.++++||+||||+||+|+|||||||++|||++|+|||+
T Consensus 160 i~~~G~~~v~~~i~~~~-~g--~~i~~~~~wPv~~~~p~~~R~~~~epl~TGirvID~l~PigrGqr~~Ifg~~g~GKT~ 236 (578)
T 3gqb_A 160 VKPAGEYTVEEPVVVLE-DG--TELKMYHTWPVRRARPVQRKLDPNTPFLTGMRILDVLFPVAMGGTAAIPGPFGSGKSV 236 (578)
T ss_dssp ECCSEEECTTSCSEEET-TC--CEECSCEEEETTSCCCCSEEECSCSEECCSCHHHHTTSCEETTCEEEECCCTTSCHHH
T ss_pred eccCCcccccceeEEee-cC--ccccccccccccCCCChHHhccCCCcccccchhhhhcccccCCCEEeeeCCCCccHHH
Confidence 99999999999999997 34 6999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Q 010179 261 ISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYF 340 (516)
Q Consensus 261 Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyf 340 (516)
|+++|++|+++|++||++||||++|++||+++|++++++. .++++|+||++|+||||+||.+|++++|+|+|+||||
T Consensus 237 l~~~ia~~~~~~v~V~~~iGER~~Ev~e~~~~~~el~d~~---~G~~~~~rtvvv~~tsd~p~~~R~~~~~~altiAEyf 313 (578)
T 3gqb_A 237 TQQSLAKWSNADVVVYVGSGERGNEMTDVLVEFPELTDPK---TGGPLMHRTVLIANTSNMPVAAREASIYVGVTIAEYF 313 (578)
T ss_dssp HHHHHHHHSSCSEEEEEEEEECHHHHHHHHTTGGGCBCTT---TSSBSGGGEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCCEEEEEEecccHHHHHHHHHHHHhhcccc---cccccccceEEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988865 5778999999999999999999999999999999999
Q ss_pred HHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCC
Q 010179 341 RDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDF 420 (516)
Q Consensus 341 rd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~ 420 (516)
||+|+|||+++||+||||+|+||||+++||+|+++|||||++++|++||||||+++++++ ++||||++++|++|+||+
T Consensus 314 rd~G~dVLl~~Ds~tR~A~A~rEis~~lge~P~~~GYp~~l~s~l~~l~ERAg~~~~~~~--~~GSIT~i~~v~~~gdD~ 391 (578)
T 3gqb_A 314 RDQGFSVALMADSTSRWAEALREISSRLEEMPAEEGYPPYLAARLAAFYERAGKVITLGG--EEGAVTIVGAVSPPGGDM 391 (578)
T ss_dssp HHTTCEEEECCSCHHHHHHHHHHHHHHTTCCCCSSSSCTTHHHHHHHHHTTCEEEECTTS--CEEEEEEEEECCCTTTCT
T ss_pred HHcCCCEEEEecChHHHHHHHHHHHHhccCCCccccCCchhhhHHHHHHHhhcCcccCCC--CCcceEEEEEEEcCCCCC
Confidence 999999999999999999999999999999999999999999999999999999986653 789999999999999999
Q ss_pred CchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhc-CCHHHHHHHHHHHHHHHhhhhHHHHHH-c
Q 010179 421 SDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQ-FDPDFINIRTKAREVLQREDDLNEIVQ-V 498 (516)
Q Consensus 421 ~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~-~~~~~~~~~~~~r~~L~~y~e~~~li~-~ 498 (516)
+|||++++++|+||||+|||+||++||||||||+.|+||+++.+++||.. ++++|++++++++++|++|+|+++|++ +
T Consensus 392 tdPi~~~t~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~v~~~~~~~~~~~h~~~a~~~~~~l~~~~el~~ii~i~ 471 (578)
T 3gqb_A 392 SEPVTQSTLRIVGAFWRLDASLAFRRHFPAINWNGSYSLFTSALDPWYRENVAEDYPELRDAISELLQREAGLQEIVQLV 471 (578)
T ss_dssp TSHHHHHHHTTCSEECCBCHHHHHHTCSSCBCTTTCEESSHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHTTTTTTTTT
T ss_pred CCcchHHHhhhcCceEEECHHHHhCCCCCCcCcccchhhccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999854 799999999999999999999999999 9
Q ss_pred CCCc
Q 010179 499 GYLW 502 (516)
Q Consensus 499 G~~~ 502 (516)
|+|.
T Consensus 472 G~d~ 475 (578)
T 3gqb_A 472 GPDA 475 (578)
T ss_dssp TGGG
T ss_pred CCcc
Confidence 9984
No 4
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=100.00 E-value=9.5e-106 Score=859.02 Aligned_cols=398 Identities=25% Similarity=0.314 Sum_probs=355.2
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|.++++++|++|......+.+|+|++|.|++++++|++++++||+|+|. +.+.|||+++++|++.+++|++++||++|+
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~i~~v~Gl~~~~~gElv~~~-~~~~g~v~~l~~d~v~~~~~~~~~gi~~G~ 86 (513)
T 3oaa_A 8 ISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGLADCMQGEMISLP-GNRYAIALNLERDSVGAVVMGPYADLAEGM 86 (513)
T ss_dssp ----------------CCTTEEEEEEEETTEEEEEECTTCBTTCEEEET-TTEEEEEEEECSSCEEEEESSCCSSCCTTC
T ss_pred HHHHHHHHHHhcCCCCCceeEEEEEEEECcEEEEECCccCCcCCEEEEC-CCCEEEEEEeeCCEEEEEEeCCccCCCCCC
Confidence 5678999999999998899999999999999999999999999999996 448999999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
+|.+||++++||||++|||||||++|+|||+.+. +.
T Consensus 87 ~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~---------------i~----------------------------- 122 (513)
T 3oaa_A 87 KVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGP---------------LD----------------------------- 122 (513)
T ss_dssp EEECCSCSSEEECSGGGTTCEEETTSCBTTCSCS---------------CC-----------------------------
T ss_pred EEEEcCCCCeEeeCHHHhccchhhcCcCccCCCC---------------CC-----------------------------
Confidence 9999999999999999999999999999998531 11
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l 239 (516)
..++||+..++| +++|.++++||+||||+||+|
T Consensus 123 ----------------------------------------------~~~~~pi~~~ap~~~~R~~v~epl~TGikaID~l 156 (513)
T 3oaa_A 123 ----------------------------------------------HDGFSAVEAIAPGVIERQSVDQPVQTGYKAVDSM 156 (513)
T ss_dssp ----------------------------------------------CSCEEESSCCCCCSSSCCCCCCBCCCSCHHHHHH
T ss_pred ----------------------------------------------ccceeecccCCCCccccCCcCcccccceeeeccc
Confidence 013577755544 889999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEe
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ 317 (516)
+|||||||++|||++|+|||+| +.+|+|++++|+ |||++||||++||++|+++| .++++|+||+||++
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~ev~e~~~~l----------~~~g~m~~tvvV~a 226 (513)
T 3oaa_A 157 IPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKL----------EEHGALANTIVVVA 226 (513)
T ss_dssp SCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHHHHHHHHHH----------HHHSCSTTEEEEEE
T ss_pred cccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHHHHHHHHHH----------hhcCcccceEEEEE
Confidence 9999999999999999999999 579999999986 89999999999999999985 56789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc
Q 010179 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC 397 (516)
Q Consensus 318 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~ 397 (516)
|+|+||.+|++++|+|+|+||||||+|+||||++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYP~~vf~~~srLlERAg~~~~ 306 (513)
T 3oaa_A 227 TASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLLLRRPPGREAFPGDVFYLHSRLLERAARVNA 306 (513)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHHHHHHHHTTCCBCTTSCBTTHHHHHHHHHTTCSEECH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcCCCEEEEecChHHHHHHHHHHHHhcCCCCcccCCCchhhhhcchHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999742
Q ss_pred C-------CC-CCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhh
Q 010179 398 L-------GG-PERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE 469 (516)
Q Consensus 398 ~-------~~-~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~ 469 (516)
. |. ..++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+|..+
T Consensus 307 ~~~~~~~~~~~~g~~GSITal~~V~~~~dD~s~pIp~~~~si~DGqIvLsr~La~~giyPAIdvl~SvSRv~~~~----- 381 (513)
T 3oaa_A 307 EYVEAFTKGEVKGKTGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETNLFNAGIRPAVNPGISVSRVGGAA----- 381 (513)
T ss_dssp HHHHHHHTTSCCSCCEEEEECCEEECGGGCCSSHHHHHHHHHSSEEEEECHHHHTTSCCSCBCTTTCEESSGGGG-----
T ss_pred ccchhccccccCCCCcceEEEEEEEcCCCCccCcchHhhhccCCeEEEEehhHHhCCCCCccCccccccccCccc-----
Confidence 1 11 0148999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCCcccc
Q 010179 470 QFDPDFINIRTKAREVLQREDDLNEIVQVGYLWSLS 505 (516)
Q Consensus 470 ~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~~~~~~ 505 (516)
.+++|++++.++|++|++|+|+++++++|.+.+.+
T Consensus 382 -~~~~~~~va~~lr~~la~y~el~~~~~~g~~ld~~ 416 (513)
T 3oaa_A 382 -QTKIMKKLSGGIRTALAQYRELAAFSQFASDLDDA 416 (513)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHH
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHH
Confidence 78999999999999999999999999999887643
No 5
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=100.00 E-value=8e-105 Score=853.65 Aligned_cols=394 Identities=23% Similarity=0.320 Sum_probs=353.5
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|.++++++|++|+...+.+.+|+|++|.|++++++|++++++||+|+|.++ +.|+|++++++++.+++|+++.||++|+
T Consensus 8 ~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 86 (502)
T 2qe7_A 8 ISALIKKQIENYEADLEVVEVGTVIQVGDGIARVHGLEKVMAGELLEFENG-VMGMAQNLEEDNVGVVILGPYTEIREGT 86 (502)
T ss_dssp -------------------CEEEEEEEETTEEEEECCTTCBTTEEEEETTS-CEEEEEEEETTEEEEEECSCCSSCCTTC
T ss_pred HHHHHHHHHHhcCCCcceeEEEEEEEecCcEEEEEECCCCCCCCEEEECCC-CEEEEEEecCCeEEEEEecCccCCcCCC
Confidence 567899999999999988899999999999999999999999999999754 6799999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
.|.+||++++||||++|||||||++|+|||+.++ +
T Consensus 87 ~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~---------------i------------------------------ 121 (502)
T 2qe7_A 87 QVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGP---------------I------------------------------ 121 (502)
T ss_dssp EEEEEEEESEEECSGGGTTCEECTTCCBSSCSCC---------------C------------------------------
T ss_pred EEEEeCCcceEEcccccceEEEccCCCCCCCCCC---------------C------------------------------
Confidence 9999999999999999999999999999998531 1
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l 239 (516)
...++||++.++| +.+|.++++||+||||+||+|
T Consensus 122 ---------------------------------------------~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l 156 (502)
T 2qe7_A 122 ---------------------------------------------ETAEYRPIESPAPGVMDRKSVHEPLQTGIKAIDSM 156 (502)
T ss_dssp ---------------------------------------------CCCCEEESSCCCCCTTSBCCCCSBCCCSCHHHHHS
T ss_pred ---------------------------------------------CCCceeeccCCCCCcccccCCCCccccceeecccc
Confidence 0114688877666 889999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEe
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ 317 (516)
+|||||||++|||++|+|||+| +.+|+|++++|+ |||++||||++||++|+++| .++++|+||+||++
T Consensus 157 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~----------~~~g~m~~tvvV~a 226 (502)
T 2qe7_A 157 IPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQSTVAGVVETL----------RQHDALDYTIVVTA 226 (502)
T ss_dssp SCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHHHHHHHHHH----------HHTTCSTTEEEEEE
T ss_pred cccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchHHHHHHHHH----------hhCCCcceeEEEEE
Confidence 9999999999999999999999 569999999995 89999999999999999985 56789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc
Q 010179 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC 397 (516)
Q Consensus 318 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~ 397 (516)
|+|+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++
T Consensus 227 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLl~~Dsltr~A~A~REisl~lgepP~~~gYpg~vf~~~~rL~ERAg~~~~ 306 (502)
T 2qe7_A 227 SASEPAPLLYLAPYAGCAMGEYFMYKGKHALVVYDDLSKQAAAYRELSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSD 306 (502)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHTTTTCCCCSTTSCTTHHHHHHHHHTSCCBBCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccCCCCchHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHH
Q 010179 398 LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN 477 (516)
Q Consensus 398 ~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~ 477 (516)
.+ ++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+ ..++|++
T Consensus 307 ~~---~~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~g~~PAIdvl~S~SRv~~~~------~~~~~~~ 377 (502)
T 2qe7_A 307 EK---GGGSLTALPFIETQAGDVSAYIPTNVISITDGQIFLESDLFYSGVRPAVNVGISVSRVGGAA------QIKAMKK 377 (502)
T ss_dssp TT---TCCEEEEEEEEECSTTCCSSHHHHHHHTTSSEEEEECHHHHTTTCSSCBCTTTCEESSGGGG------SCHHHHH
T ss_pred cC---CCcceeEEEEEEccCCCcccchhHHHhhhcCcEEEEehhHhhCCCCceeCcccccccCCCcc------CCHHHHH
Confidence 21 46999999999999999999999999999999999999999999999999999999999988 7899999
Q ss_pred HHHHHHHHHHhhhhHHHHHHcCCCccc
Q 010179 478 IRTKAREVLQREDDLNEIVQVGYLWSL 504 (516)
Q Consensus 478 ~~~~~r~~L~~y~e~~~li~~G~~~~~ 504 (516)
++.++|++|++|+|+++++++|++.+.
T Consensus 378 ~a~~lr~~la~y~el~~~~~~G~~l~~ 404 (502)
T 2qe7_A 378 VAGTLRLDLAQYRELQAFAQFGSDLDK 404 (502)
T ss_dssp HHHHHHHHHHHHHHGGGSTTCCCCTTT
T ss_pred HHHHHHHHHhhhHHHHHHHHhccCCCH
Confidence 999999999999999999999988763
No 6
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=100.00 E-value=5.1e-105 Score=855.60 Aligned_cols=394 Identities=23% Similarity=0.312 Sum_probs=362.7
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|.++++++|++|....+.+.+|+|++|.|++++++|++++++||+|+|..+.+.|+|++++++++.+++|+++.||++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~G~V~~V~g~iv~v~gl~~~~~gEl~~i~~~g~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 99 (515)
T 2r9v_A 20 ITKVLEEKIKSFEEKIDLEDTGKVIQVGDGIARAYGLNKVMVSELVEFVETGVKGVAFNLEEDNVGIIILGEYKDIKEGH 99 (515)
T ss_dssp ---------CTTCCCSCTTTEEEEEEEETTEEEEEECTTCCTTEEEEETTTCCEEEEEECCTTCEEEEEESCCTTCCTTC
T ss_pred HHHHHHHHHHhcCCCCcceeeeEEEEEECcEEEEecCCCCCCCCEEEEecCCeEEEEEEecCCeEEEEEecCcccccCCC
Confidence 56789999999999999889999999999999999999999999999942346799999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
.|.+||++++||+|++|||||||++|+|||+.++ +
T Consensus 100 ~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~---------------i------------------------------ 134 (515)
T 2r9v_A 100 TVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGP---------------I------------------------------ 134 (515)
T ss_dssp EEEEEEEECEEEESGGGTTCEECTTSCBCSSSCC---------------C------------------------------
T ss_pred EEEEeCCcceeecCccceeeEEcCCCCCcCCCCC---------------C------------------------------
Confidence 9999999999999999999999999999998421 1
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l 239 (516)
.+.++||++.++| +.+|.++++||+||||+||+|
T Consensus 135 ---------------------------------------------~~~~~~pi~~~~P~~~~R~~v~epl~TGiraID~l 169 (515)
T 2r9v_A 135 ---------------------------------------------NAKNFRPIEIKAPGVIYRKPVDTPLQTGIKAIDSM 169 (515)
T ss_dssp ---------------------------------------------CCSEEEESCCCCCCGGGBCCCCSEECCSCHHHHHH
T ss_pred ---------------------------------------------CccceeecccCCCCcccccCCCcchhcCccccccc
Confidence 0124688877776 889999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEe
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ 317 (516)
+|||||||++|||++|+|||+| +.+|+|++++|+ |||++||||++||++|+++| .++++|+||+||++
T Consensus 170 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~Ev~e~~~~~----------~~~g~m~rtvvV~a 239 (515)
T 2r9v_A 170 IPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSAIARIIDKL----------RQYGAMEYTTVVVA 239 (515)
T ss_dssp SCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHHHHHHHHHH----------HHTTGGGGEEEEEE
T ss_pred cccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHHHHHHHHHH----------HhCCCcceeEEEEE
Confidence 9999999999999999999999 569999999996 89999999999999999985 57789999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc
Q 010179 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC 397 (516)
Q Consensus 318 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~ 397 (516)
|+|+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++
T Consensus 240 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~DslTr~A~A~REisl~lgepP~r~gYp~~vf~~~~rLlERAg~~~~ 319 (515)
T 2r9v_A 240 SASDPASLQYIAPYAGCAMGEYFAYSGRDALVVYDDLSKHAVAYRQLSLLMRRPPGREAYPGDIFYLHSRLLERAVRLND 319 (515)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHTSCCCTTCCCCCCCHHHHHHHHHTTCEEBCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEeccHHHHHHHHHHHhhhcCCCCCcccCChhHHHHhHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHH
Q 010179 398 LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN 477 (516)
Q Consensus 398 ~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~ 477 (516)
.+ ++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+ .+++|++
T Consensus 320 ~~---~~GSITal~~v~~~~~D~s~pI~~~~~si~DGqI~Lsr~La~~g~yPAIdvl~SvSRv~~~~------~~~~~~~ 390 (515)
T 2r9v_A 320 KL---GGGSLTALPIVETQANDISAYIPTNVISITDGQIYLEPGLFYAGQRPAINVGLSVSRVGGSA------QIKAMKQ 390 (515)
T ss_dssp TT---TSCEEEEEEEEEESTTCTTSHHHHHHHHTSSEEEEBCHHHHHHTCSSCBCTTTCEEGGGTTT------SCHHHHH
T ss_pred cC---CCcceEEeeeeeccCCCccccchhhhccccceEEEEchHHHhCCCCCeeccccccccCCccc------CCHHHHH
Confidence 21 46999999999999999999999999999999999999999999999999999999999988 7899999
Q ss_pred HHHHHHHHHHhhhhHHHHHHcCCCcc
Q 010179 478 IRTKAREVLQREDDLNEIVQVGYLWS 503 (516)
Q Consensus 478 ~~~~~r~~L~~y~e~~~li~~G~~~~ 503 (516)
++.++|++|++|+|+++++++|++.+
T Consensus 391 ~a~~lr~~la~y~el~~~~~~G~~l~ 416 (515)
T 2r9v_A 391 VAGMLRIDLAQYRELETFAQFATELD 416 (515)
T ss_dssp HHHHHHHHHHHHHHHHTTGGGCSCCC
T ss_pred HHHHHHHHHhhhhHHHHHHHhccCCC
Confidence 99999999999999999999998776
No 7
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=100.00 E-value=3.7e-104 Score=849.88 Aligned_cols=393 Identities=22% Similarity=0.304 Sum_probs=354.2
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|.++++++|++|....+.+.+|+|++|.|++++++|++++++||+|+|.++ +.|+|++++++++.+++|+++.||++|+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 86 (510)
T 2ck3_A 8 VSSILEERILGADTSVDLEETGRVLSIGDGIARVHGLRNVQAEEMVEFSSG-LKGMSLNLEPDNVGVVVFGNDKLIKEGD 86 (510)
T ss_dssp ----------------CCSSEEEEEEEETTEEEEEECTTCBTTCEEEETTS-CEEEEEEECSSCEEEEESSCGGGCCTTC
T ss_pred HHHHHHHHHHhcCCCcceeEEeEEEEEECcEEEEeeCCCCCCCCEEEECCC-CeEEEEeccCCeEEEEEECCcccccCCC
Confidence 567899999999999999999999999999999999999999999999754 6799999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
.|.+||++++||||++|||||||++|+|||+.++ +.
T Consensus 87 ~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~---------------i~----------------------------- 122 (510)
T 2ck3_A 87 IVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGP---------------IG----------------------------- 122 (510)
T ss_dssp EEEECCCCCEEEESGGGTTCEECTTSCBCSSSCC---------------CC-----------------------------
T ss_pred EEEEeCCcceeecCccceeeEEccCCcCcCCCCC---------------CC-----------------------------
Confidence 9999999999999999999999999999998531 10
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l 239 (516)
..++||++.++| +++|.++++||+||||+||+|
T Consensus 123 ----------------------------------------------~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l 156 (510)
T 2ck3_A 123 ----------------------------------------------SKARRRVGLKAPGIIPRISVREPMQTGIKAVDSL 156 (510)
T ss_dssp ----------------------------------------------CSEEEESSCCCCCSTTBCCCCSBCCCSCHHHHHH
T ss_pred ----------------------------------------------ccceeecccCCCCcccccccCccccccceeeccc
Confidence 113688877665 889999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHh-HHHhhhccC--------CC-EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSN--------SD-TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVM 309 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~--------~d-~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~ 309 (516)
+|||||||++|||++|+|||+| +.+|+|++. +| +|||++||||++||++|+++| .++++|
T Consensus 157 ~PigrGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~----------~~~g~m 226 (510)
T 2ck3_A 157 VPIGRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRL----------TDADAM 226 (510)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHH----------HHTTCG
T ss_pred cccccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHH----------HhcCCc
Confidence 9999999999999999999999 668998865 67 599999999999999999985 567899
Q ss_pred ceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHH
Q 010179 310 KRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFY 389 (516)
Q Consensus 310 ~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ 389 (516)
+||+||++|+|+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lgepP~r~gYpg~vf~~~~rLl 306 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLL 306 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHTTCCCCGGGCCTTHHHHHHHHH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEcCHHHHHHHHHHHHHhcCCCCccCCcCchHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhh
Q 010179 390 ERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYE 469 (516)
Q Consensus 390 ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~ 469 (516)
||||++++.+ ++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+
T Consensus 307 ERAg~~~~~~---~~GSITal~~v~~~~dD~s~pI~~~~~si~DgqI~Lsr~La~~gi~PAIdvl~SvSRv~~~~----- 378 (510)
T 2ck3_A 307 ERAAKMNDAF---GGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELFYKGIRPAINVGLSVSRVGSAA----- 378 (510)
T ss_dssp TTCEEBCGGG---TSCEEEEEEEEECSTTCTTSHHHHHHHHHSSEEEEBCHHHHHHTCSSCBCTTTCEESSGGGG-----
T ss_pred HhhhcccccC---CCcceeEeeeeccCCCCccccchHhhhcccceEEEEehhHhhCCCCCcccchhccccccccc-----
Confidence 9999985321 46999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCHHHHHHHHHHHHHHHhhhhHHHHHHcCCCcc
Q 010179 470 QFDPDFINIRTKAREVLQREDDLNEIVQVGYLWS 503 (516)
Q Consensus 470 ~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~~~~ 503 (516)
..++|++++.++|++|++|+|+++++++|++.+
T Consensus 379 -~~~~~~~~a~~lr~~la~y~el~~~~~~G~~l~ 411 (510)
T 2ck3_A 379 -QTRAMKQVAGTMKLELAQYREVAAFAQFGSDLD 411 (510)
T ss_dssp -SCHHHHHHHHHHHHHHHHHHHHGGGSSSCSSSC
T ss_pred -CCHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCC
Confidence 789999999999999999999999999998876
No 8
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=100.00 E-value=1.5e-104 Score=852.46 Aligned_cols=393 Identities=24% Similarity=0.327 Sum_probs=355.6
Q ss_pred CCccccccccccccccCceeeeEEEEEECceEEEEeCCCCccccEEEEcCCceEEEEEEEeCCeEEEEEcccccCCCCCC
Q 010179 1 MPSVYGARLTTFEDEEKESEYGYVRKVSGPVVIADGMNGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVND 80 (516)
Q Consensus 1 ~~~~~~~~i~~~~~~~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~~~l~gEVv~~~~d~v~l~~~~~t~GI~~G~ 80 (516)
|.++++++|++|+...+.+.+|+|++|.|++++++|++++++||+|+|.++ +.|+|++++++++.+++|+++.||++|+
T Consensus 9 ~~~~~~~~i~~~~~~~~~~~~G~V~~v~g~iv~v~gl~~~~~ge~~~i~~g-~~g~v~~l~~~~v~~~~~~~~~gi~~G~ 87 (507)
T 1fx0_A 9 ISKIIRERIEGYNREVKVVNTGTVLQVGDGIARIHGLDEVMAGELVEFEEG-TIGIALNLESNNVGVVLMGDGLMIQEGS 87 (507)
T ss_dssp ----------------CTTTEEEECCCCSSEEEEEECTTCCTTCCEEETTC-CEEEEEEECSSEEEEEECSCGGGCCTTC
T ss_pred HHHHHHHHHHhccCCcceeEEEEEEEEeCCEEEEEECCCccCCCEEEECCC-ceEEEEeccCCeEEEEEecCccCCcCCC
Confidence 567899999999999988899999999999999999999999999999754 6799999999999999999999999999
Q ss_pred eEEEcCCcceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeec
Q 010179 81 PVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFE 160 (516)
Q Consensus 81 ~V~~tg~~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e 160 (516)
.|.+||++++||||++|||||||++|+|||+.++ +
T Consensus 88 ~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~---------------i------------------------------ 122 (507)
T 1fx0_A 88 SVKATGRIAQIPVSEAYLGRVINALAKPIDGRGE---------------I------------------------------ 122 (507)
T ss_dssp EEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCC---------------C------------------------------
T ss_pred EEEEeCCcceeecCccceeEEEccCCcCCCCCCC---------------C------------------------------
Confidence 9999999999999999999999999999998531 1
Q ss_pred cccccccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccc
Q 010179 161 NSLMQHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDAL 239 (516)
Q Consensus 161 ~~~~~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l 239 (516)
...++||++.++| +.+|.++++||+||||+||+|
T Consensus 123 ---------------------------------------------~~~~~~pi~~~~p~~~~R~~v~epl~TGiraID~l 157 (507)
T 1fx0_A 123 ---------------------------------------------TASESRLIESPAPGIMSRRSVYEPLQTGLIAIDAM 157 (507)
T ss_dssp ---------------------------------------------CCSEEEESSCCCCCSSSBCCCCSBCCCSCTTTTTT
T ss_pred ---------------------------------------------CCCceeeccCCCCCcccccccCCcccccceecccc
Confidence 0114688877665 889999999999999999999
Q ss_pred cccccCCccccCCCCCCCchHh-HHHhhhccCCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEe
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVI-SQALSKYSNSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVAN 317 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~L-l~~ia~~~~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ 317 (516)
+|||||||++|||++|+|||+| +.+|+|++++|+ |||++||||++||++|+++| .++++|+||+||++
T Consensus 158 ~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~Ev~~~~~~~----------~~~g~m~rtvvV~a 227 (507)
T 1fx0_A 158 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYVAIGQKASSVAQVVTNF----------QERGAMEYTIVVAE 227 (507)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEEESCCHHHHHHHHHHT----------GGGTGGGSEEEEEE
T ss_pred cccccCCEEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCchHHHHHHHHH----------HhcCccccceEEEE
Confidence 9999999999999999999999 669999999995 89999999999999999985 57889999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc
Q 010179 318 TSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC 397 (516)
Q Consensus 318 tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~ 397 (516)
|+|+||.+|++++|+|+|+||||||+|+|||+++||+||||+|+||||+++||||+++||||++|+.+++|+||||++++
T Consensus 228 tad~p~~~r~~a~~~a~tiAEyfrd~G~dVLli~Dsltr~A~A~REisl~lge~P~~~gYp~~vf~~~srLlERAg~~~~ 307 (507)
T 1fx0_A 228 TADSPATLQYLAPYTGAALAEYFMYRERHTLIIYDDLSKQAQAYRQMSLLLRRPPGREAYPGDVFYLHSRLLERAAKLSS 307 (507)
T ss_dssp CTTSCGGGTTHHHHHHHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGCCSCSSTTTTTTGGGCCBBCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEEecHHHHHHHHHHHHHhcCCCCccccCCchHhhhhHHHHHhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHH
Q 010179 398 LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN 477 (516)
Q Consensus 398 ~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~ 477 (516)
.+ ++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+++.+ ..++|++
T Consensus 308 ~~---~~GSITal~~v~~~~~D~s~pI~~~~~si~DgqIvLsr~La~~g~yPAIdvl~S~SR~~~~~------~~~~~~~ 378 (507)
T 1fx0_A 308 LL---GEGSMTALPIVETQAGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAA------QIKAMKK 378 (507)
T ss_dssp TT---TSCEEEECCEEECSTTCTTSHHHHHHHTTSSCBCCCCSSSSSSSCSSCCCTTTCCCTTGGGG------SCHHHHH
T ss_pred cC---CCcceeeeeeeeccCCCcccchHHHHHhhcCcEEEEehhHhhCCCCCccchhhhhccccccC------CCHHHHH
Confidence 21 47999999999999999999999999999999999999999999999999999999999988 7899999
Q ss_pred HHHHHHHHHHhhhhHHHHHHcCCCcc
Q 010179 478 IRTKAREVLQREDDLNEIVQVGYLWS 503 (516)
Q Consensus 478 ~~~~~r~~L~~y~e~~~li~~G~~~~ 503 (516)
++.++|++|++|+|+++++++|++.+
T Consensus 379 ~a~~lr~~la~y~el~~~~~~G~~l~ 404 (507)
T 1fx0_A 379 VAGKLKLELAQFAELEAFAQFASDLD 404 (507)
T ss_dssp HHHHHHHHHHHHHHHTTTGGGCSSCC
T ss_pred HHHHHHHHHHhhhHHHHHHHhccCCC
Confidence 99999999999999999999998876
No 9
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=100.00 E-value=5.2e-103 Score=832.30 Aligned_cols=377 Identities=24% Similarity=0.355 Sum_probs=347.3
Q ss_pred eeeeEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCC-CCCeEEEcCCcceeecC
Q 010179 19 SEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVELG 94 (516)
Q Consensus 19 ~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~-~G~~V~~tg~~lsVpvG 94 (516)
+.+|+|++|.|++++++|++++++||+|+|. ++ .+.|||++|++|++.+|+|++++||+ .|++|.+||++++||||
T Consensus 10 ~~~g~v~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg 89 (465)
T 3vr4_D 10 KEYRTIKEVVGPLMAVEKVSGVKYEELIEVRMQNGEIRRGQVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVS 89 (465)
T ss_dssp -CBCCEEEEETTEEEEESCCSCCTTCEEEEECTTSCEEEEEEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEEC
T ss_pred ceEEEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecc
Confidence 5799999999999999999899999999994 33 47999999999999999999999999 89999999999999999
Q ss_pred cccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCCC
Q 010179 95 PGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPDA 174 (516)
Q Consensus 95 ~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~~ 174 (516)
++|||||||++|+|||+.+....
T Consensus 90 ~~lLGRV~d~lG~PiD~~~~i~~--------------------------------------------------------- 112 (465)
T 3vr4_D 90 EDMIGRVFDGLGRPKDNGPEILP--------------------------------------------------------- 112 (465)
T ss_dssp GGGTTEEEETTSCBCSCCCCCCC---------------------------------------------------------
T ss_pred hhhccceeccCCcccCCCCCCcc---------------------------------------------------------
Confidence 99999999999999998532110
Q ss_pred CCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCCC
Q 010179 175 MGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGA 253 (516)
Q Consensus 175 ~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~ 253 (516)
.++||+.. |+++++|.++++||+||||+||+|+|||||||++|||+
T Consensus 113 ---------------------------------~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifgg 159 (465)
T 3vr4_D 113 ---------------------------------EKYLDINGEVINPIARDYPDEFIQTGISAIDHLNTLVRGQKLPVFSG 159 (465)
T ss_dssp ---------------------------------SEEEESSCCCBCTTTEECCCCBCBCSCHHHHTTSCCBTTCBCCEEEC
T ss_pred ---------------------------------cceeeccCcccCchhccCcccccccCceEEecccccccCCEEEEeCC
Confidence 02345533 34478999999999999999999999999999999999
Q ss_pred CCCCchHhHHHhhhccCC--C----EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHH
Q 010179 254 FGCGKTVISQALSKYSNS--D----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAARE 327 (516)
Q Consensus 254 ~g~GKT~Ll~~ia~~~~~--d----~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~ 327 (516)
+|+|||+|++||++++.+ | ++||++||||++||+||+++| .++++|+||++|++|+|+||.+|+
T Consensus 160 ~G~GKt~L~~~Ia~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~~----------~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 160 SGLPHKELAAQIARQATVLDSSDDFAVVFAAIGITFEEAEFFMEDF----------RQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp TTSCHHHHHHHHHHHCBCSSCSSCEEEEEEEEEECHHHHHHHHHHH----------HHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CCcChHHHHHHHHHHHHhccCCCceEEEEEEecCCcHHHHHHHHHH----------hhcCCccceEEEEECCCCCHHHHH
Confidence 999999999999999876 7 899999999999999999986 456789999999999999999999
Q ss_pred HHHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCc
Q 010179 328 ASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGS 406 (516)
Q Consensus 328 ~a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GS 406 (516)
+++|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+++ +++||
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~DslTr~A~A~REisl~lge~P~~~GYp~~vf~~l~~l~ERAg~~~-----~~~GS 304 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDMTNYAEALREISAARREVPGRRGYPGYLYTNLATLFERAGRIR-----GLKGS 304 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECHHHHHHHHHHHHHHTTCCCCGGGSCTTHHHHHHHHHTSCEEET-----TCSCE
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHhhcCCCCccccCCchHHHHhHHHHHhhhccC-----CCCCc
Confidence 999999999999998 699999999999999999999999999999999999999999999999999984 25899
Q ss_pred eeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhh-hhhhcCCHHHHHHHHHHHHH
Q 010179 407 VTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALE-SFYEQFDPDFINIRTKAREV 485 (516)
Q Consensus 407 IT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~-~~~~~~~~~~~~~~~~~r~~ 485 (516)
||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+. +|+ ..++|++++.+++++
T Consensus 305 IT~i~tv~~~~dD~~~pI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~--~~~~h~~~a~~l~~~ 382 (465)
T 3vr4_D 305 VTQIPILTMPEDDKTHPIPDLTGYITEGQIILTRELYKSGIQPPIDVLPSLSRLKDKGTGAGK--TREDHAATMNQLFAA 382 (465)
T ss_dssp EEEEEEEECGGGCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTT--SCTTHHHHHHHHHHH
T ss_pred EEEEEEEEecCCCcccchhHHHhhhcCeEEEEcHHHHhCCCCCCCCccccchhcchhhcCccc--CCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999762 233 458999999999999
Q ss_pred HHhhhhHHHHHH-cCCCc
Q 010179 486 LQREDDLNEIVQ-VGYLW 502 (516)
Q Consensus 486 L~~y~e~~~li~-~G~~~ 502 (516)
|++|+|++++++ +|++.
T Consensus 383 ~~~~~el~~i~~~~G~d~ 400 (465)
T 3vr4_D 383 YAQGKQAKELAVVLGESA 400 (465)
T ss_dssp HHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHhhcCCCC
Confidence 999999999999 78665
No 10
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=100.00 E-value=2.6e-102 Score=826.77 Aligned_cols=378 Identities=24% Similarity=0.373 Sum_probs=348.2
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCC-CCCeEEEcCCcceeec
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLM-VNDPVLRTHKPLSVEL 93 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~-~G~~V~~tg~~lsVpv 93 (516)
.+++|+|++|.|++++++|++++++||+|+|. ++ .+.|||++|+++++.+|+|++++||+ .|+.|++||++++|||
T Consensus 5 ~~~~g~V~~v~g~~v~v~gl~~~~~ge~v~i~~~~g~~~~geVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpv 84 (464)
T 3gqb_B 5 KKEYTGITYISGPLLFVENAKDLAYGAIVDIKDGTGRVRGGQVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGV 84 (464)
T ss_dssp CCCBCCEEEEETTEEEEESCTTSCTTCEEEEECTTSCEEEEEEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEE
T ss_pred cceeeEEEEEECCEEEEecCCCCCcCCEEEEEcCCCCEEEEEEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEe
Confidence 35799999999999999999899999999994 33 47999999999999999999999999 8999999999999999
Q ss_pred CcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCC
Q 010179 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (516)
Q Consensus 94 G~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~ 173 (516)
|++|||||||++|+|||+.+....
T Consensus 85 g~~lLGRV~d~lG~PiD~~~~i~~-------------------------------------------------------- 108 (464)
T 3gqb_B 85 SKEMLGRRFNGIGKPIDGLPPITP-------------------------------------------------------- 108 (464)
T ss_dssp CSTTTTEEEETTCCBCSSSCCCCC--------------------------------------------------------
T ss_pred ChHhcCCEeccCCcccCCCccccC--------------------------------------------------------
Confidence 999999999999999998531100
Q ss_pred CCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccC-CCCcccccCCCccccccccccccccccccCCccccCC
Q 010179 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRT-PRPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (516)
Q Consensus 174 ~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~-~~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g 252 (516)
.++||+.. |+++++|.++++||+||||+||+|+|||||||++|||
T Consensus 109 ----------------------------------~~~~~i~~~~p~p~~R~~~~e~l~TGiraID~l~pigrGQr~~Ifg 154 (464)
T 3gqb_B 109 ----------------------------------EKRLPITGLPLNPVARRKPEQFIQTGISTIDVMNTLVRGQKLPIFS 154 (464)
T ss_dssp ----------------------------------SEEEETTCCCBCGGGBCCCCCBCBCSCHHHHTTSCCBTTCBCCEEE
T ss_pred ----------------------------------cceeeccCCCCChhhccCccccccCcceeeecccccccCCEEEEec
Confidence 02355643 3447899999999999999999999999999999999
Q ss_pred CCCCCchHhHHHhhhccCC---------C----EEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCC
Q 010179 253 AFGCGKTVISQALSKYSNS---------D----TVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTS 319 (516)
Q Consensus 253 ~~g~GKT~Ll~~ia~~~~~---------d----~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~ts 319 (516)
++|+|||+|++||++++.+ | ++||++||||++|++||+++| .++++|+||++|++|+
T Consensus 155 g~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l----------~~~g~~~rtvvv~~t~ 224 (464)
T 3gqb_B 155 GSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEF----------ERTGALSRSVLFLNKA 224 (464)
T ss_dssp ETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHH----------HHTSGGGGEEEEEEET
T ss_pred CCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHh----------hhcccccceEEEEECC
Confidence 9999999999999999866 6 899999999999999999986 4567899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccC
Q 010179 320 NMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCL 398 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~ 398 (516)
|+||.+|++++|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+++
T Consensus 225 d~p~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~DdlTr~A~A~REisl~lge~P~~~GYp~~~f~~l~~l~ERag~~~-- 302 (464)
T 3gqb_B 225 DDPTIERILTPRMALTVAEYLAFEHDYHVLVILTDMTNYSEALREIGAAREEIPGRRGYPGYMYTDLATIYERAGVVE-- 302 (464)
T ss_dssp TSCTHHHHHHHHHHHHHHHHHHHTTCCEEEEEEETHHHHHHHHHHHHHTTTCCBCGGGSBTTHHHHHHHHHTSCBCBT--
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcChHHHHHHHHHHHHhcCCCCccccCCchHHHHhHHHHHhhcccC--
Confidence 99999999999999999999998 699999999999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhh-hhhcCCHHHHH
Q 010179 399 GGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALES-FYEQFDPDFIN 477 (516)
Q Consensus 399 ~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~-~~~~~~~~~~~ 477 (516)
+++||||++++|++|+||++|||++++++|+||||+|||+||++||||||||+.|+||+|+.+-. |+ ..++|++
T Consensus 303 ---~~~GSIT~l~~v~~~~dD~~~pi~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~m~~~ig~~~--~~~~h~~ 377 (464)
T 3gqb_B 303 ---GKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHRKGIYPPIDPLPSLSRLMNNGVGKGK--TREDHKQ 377 (464)
T ss_dssp ---TCSCEEEEEEEEEETTSCTTSHHHHHHHHHSSEEEEBCHHHHHTTCSSCBCTTTCEETTGGGTSSTTT--SCTTHHH
T ss_pred ---CCCCcEEEEEEEEccCCCccCchhHHHhhhcCeEEEEcHHHHhCCCCCCcCcccchhhcchhhcCccc--CcHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999998732 33 4589999
Q ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCc
Q 010179 478 IRTKAREVLQREDDLNEIVQ-VGYLW 502 (516)
Q Consensus 478 ~~~~~r~~L~~y~e~~~li~-~G~~~ 502 (516)
++++++++|++|+|++++++ +|++.
T Consensus 378 ~a~~l~~~~~~~~el~~i~~~~G~d~ 403 (464)
T 3gqb_B 378 VSDQLYSAYANGVDIRKLVAIIGEDA 403 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999 77664
No 11
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=100.00 E-value=7e-103 Score=835.02 Aligned_cols=380 Identities=24% Similarity=0.351 Sum_probs=326.2
Q ss_pred cCceeeeEEEEEECceEEEEeCCCCccccEEEEc--CC-ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCCcceee
Q 010179 16 EKESEYGYVRKVSGPVVIADGMNGAAMYELVRVG--HD-NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVE 92 (516)
Q Consensus 16 ~~~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~--~~-~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVp 92 (516)
...+.+|+|++|.|++++++|+.++++||+|+|. ++ .+.|||++++++++.+|+|++++||++|++|.+||++++||
T Consensus 9 ~~~~~~g~V~~V~g~vv~v~g~~~~~~ge~v~i~~~~g~~~~geV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vp 88 (469)
T 2c61_A 9 PMVKEYKTITQIAGPLIFVEKTEPVGYNEIVNIKMGDGTVRRGQVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLP 88 (469)
T ss_dssp -------------CCEEEEECCSCCCTTCEEEEECTTSCEEEEEEEEECSSEEEEEEC-------------CEEEBCEEE
T ss_pred cccccccEEEEEECcEEEEeeCCCCCcCCEEEEEeCCCCEEEEEEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEE
Confidence 4467899999999999999998889999999994 33 36799999999999999999999999999999999999999
Q ss_pred cCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCC
Q 010179 93 LGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPP 172 (516)
Q Consensus 93 vG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp 172 (516)
||++|||||||++|||||+.++... .
T Consensus 89 vg~~lLGRV~d~lG~PiDg~~~i~~---------------~--------------------------------------- 114 (469)
T 2c61_A 89 ASVDLLGRILSGSGEPRDGGPRIVP---------------D--------------------------------------- 114 (469)
T ss_dssp ECGGGTTCEEETTSCBSSSCCCCCC---------------S---------------------------------------
T ss_pred ccccceeeEEcccCCCCCCCCCCCc---------------c---------------------------------------
Confidence 9999999999999999998532110 0
Q ss_pred CCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCC-CCcccccCCCccccccccccccccccccCCccccC
Q 010179 173 DAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTP-RPVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIP 251 (516)
Q Consensus 173 ~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~-~p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~ 251 (516)
.+||+..+ +++++|.++++||+||||+||+|+|||||||++||
T Consensus 115 ------------------------------------~~~~i~~~~p~p~~R~~~~e~l~TGir~ID~l~pigrGQr~~If 158 (469)
T 2c61_A 115 ------------------------------------QLLDINGAAMNPYARLPPKDFIQTGISTIDGTNTLVRGQKLPIF 158 (469)
T ss_dssp ------------------------------------EEEESSSCSSCCBCSCCCCSBCBCSCHHHHTTSCCBTTCBCCEE
T ss_pred ------------------------------------ccccccCccCCcccccccccccceeeEeeeeeeccccCCEEEEE
Confidence 12445333 34679999999999999999999999999999999
Q ss_pred CCCCCCchHhHHHhhhccCC------CEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHH
Q 010179 252 GAFGCGKTVISQALSKYSNS------DTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAA 325 (516)
Q Consensus 252 g~~g~GKT~Ll~~ia~~~~~------d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~ 325 (516)
|++|+|||+|+++||+++.+ |++||++||||++|++||+++| .++++|+||+||+||+|+||.+
T Consensus 159 gg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~----------~~~g~m~rtvvV~~tsd~p~~~ 228 (469)
T 2c61_A 159 SASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDF----------EKTGALERAVVFLNLADDPAVE 228 (469)
T ss_dssp ECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHH----------HHHSGGGGEEEEEEETTSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHH----------HhccCccceEEEEECCCCCHHH
Confidence 99999999999999998765 6899999999999999999986 5678999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCC
Q 010179 326 REASIYTGITIAEYFR-DMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERT 404 (516)
Q Consensus 326 r~~a~~~a~tiAEyfr-d~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~ 404 (516)
|++++|+|+|+||||| |+|+||||++||+||||+|+||||+++||||+++||||++|+.|++||||||+++ +++
T Consensus 229 r~~~~~~a~tiAEyfrdd~G~dVLl~~DsltR~A~A~rEis~~lge~P~~~Gyp~~l~~~l~~l~ERAg~~~-----~~~ 303 (469)
T 2c61_A 229 RIVTPRMALTAAEYLAYEHGMHVLVILTDITNYAEALRQMGAARNEVPGRRGYPGYMYTDLATLYERAGIVK-----GAK 303 (469)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEEECHHHHHHHHTTSGGGTTCCTTSTTCCTHHHHHHHHHHTSCEEBT-----TSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHHHHHHHHHhcCCCCcccCcCchhhhhhhhHHhhccccC-----CCC
Confidence 9999999999999999 5999999999999999999999999999999999999999999999999999985 268
Q ss_pred CceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhh-hhhhhcCCHHHHHHHHHHH
Q 010179 405 GSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTAL-ESFYEQFDPDFINIRTKAR 483 (516)
Q Consensus 405 GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l-~~~~~~~~~~~~~~~~~~r 483 (516)
||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ .+|| ++++|++.+++++
T Consensus 304 GSIT~i~~v~~~~dD~~dPI~~~~~~i~dg~ivLsr~La~~g~yPAIdvl~S~SR~~~~~ig~~~--~~~~~~~~a~~l~ 381 (469)
T 2c61_A 304 GSVTQIPILSMPGDDITHPIPDLSGYITEGQIVVARELHRKGIYPPINVLPSLSRLMNSGIGAGK--TREDHKAVSDQMY 381 (469)
T ss_dssp CEEEEEEEEECCSCTTTSCCCCCGGGGTTEEEEBCHHHHHTTCSSCBCTTTCEETTGGGSCSTTT--SCTTHHHHHHHHH
T ss_pred CceeeeeeeecCCCCcCcchHHHHhhccCcEEEEcHHHHhCCCCCccCccccccccchhhccccc--CCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999984 5666 7899999999999
Q ss_pred HHHHhhhhHHHHHH-cCCCc
Q 010179 484 EVLQREDDLNEIVQ-VGYLW 502 (516)
Q Consensus 484 ~~L~~y~e~~~li~-~G~~~ 502 (516)
+.|++|++++++++ +|++.
T Consensus 382 ~~l~~~~eL~~i~~~~G~~~ 401 (469)
T 2c61_A 382 AGYAEGRDLRGLVAIVGKEA 401 (469)
T ss_dssp HHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHHHHHHHHHhhcCCCC
Confidence 99999999999999 77654
No 12
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=100.00 E-value=5.3e-100 Score=813.02 Aligned_cols=371 Identities=27% Similarity=0.418 Sum_probs=340.5
Q ss_pred ceeeeEEEEEECceEEEEeC-CCCccccEEEEcC--CceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCcceeec
Q 010179 18 ESEYGYVRKVSGPVVIADGM-NGAAMYELVRVGH--DNLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPLSVEL 93 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl-~~~~iGE~v~I~~--~~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~lsVpv 93 (516)
...+|+|++|.|++|+++|. ..+.+++.|+|.. .++.+||++ ++++.+.+++|++++||++|++|++||++++|||
T Consensus 11 ~~~~G~v~~v~G~vv~v~~~~~~~~i~~~~~i~~~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpv 90 (482)
T 2ck3_D 11 GATTGRIVAVIGAVVDVQFDEGLPPILNALEVQGRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPV 90 (482)
T ss_dssp --CEEEEEEEETTEEEEEESSCCCCTTCEEEESSCSSCCEEEEEEEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEEC
T ss_pred CCcceEEEEEEccEEEEEecCccCcccceEEEeeCCCcEEEEEeEEecCCeEEEEeccCccCCCCCCEEEEcCCcceeec
Confidence 45689999999999999985 3588999999952 358899999 8999999999999999999999999999999999
Q ss_pred CcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccccCCCC
Q 010179 94 GPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVALPPD 173 (516)
Q Consensus 94 G~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~~pp~ 173 (516)
|++|||||||++|+|||+.++ +
T Consensus 91 G~~lLGRV~d~lG~PiDg~~~---------------~------------------------------------------- 112 (482)
T 2ck3_D 91 GPETLGRIMNVIGEPIDERGP---------------I------------------------------------------- 112 (482)
T ss_dssp SGGGBTCEECTTSCBCSSSCS---------------C-------------------------------------------
T ss_pred cccccCCEEcccCcCcCCcCC---------------C-------------------------------------------
Confidence 999999999999999998421 0
Q ss_pred CCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccccccccCCccccCC
Q 010179 174 AMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPG 252 (516)
Q Consensus 174 ~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g 252 (516)
...++||++.++| +.+|.++++||+||||+||+|+|||||||++|||
T Consensus 113 --------------------------------~~~~~~pi~~~~P~~~~r~~~~e~l~TGir~ID~l~pigkGQr~~Ifg 160 (482)
T 2ck3_D 113 --------------------------------KTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFG 160 (482)
T ss_dssp --------------------------------CCCCEEESCCCCCCGGGCCCCCCEECCSCHHHHHHSCEETTCEEEEEE
T ss_pred --------------------------------CccccccccccCCchHHhcccCcCCccceEEEecccccccCCeeeeec
Confidence 0114688877665 6799999999999999999999999999999999
Q ss_pred CCCCCchHhHHHhhhcc---CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc------eEEEEEeCCCCCH
Q 010179 253 AFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK------RTTLVANTSNMPV 323 (516)
Q Consensus 253 ~~g~GKT~Ll~~ia~~~---~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~------rtvvv~~tsd~~~ 323 (516)
++|+|||+|+++|++|. ++|++||++||||+|||+||+++|+ +.++++ ||++|++|+|+||
T Consensus 161 g~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rEv~e~~~~~~----------~~~~l~~~~~~~rtvvV~~t~d~p~ 230 (482)
T 2ck3_D 161 GAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMI----------ESGVINLKDATSKVALVYGQMNEPP 230 (482)
T ss_dssp CTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHHHHHHHHHHH----------HHTSSCSSSSCCCEEEEEECTTSCH
T ss_pred CCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchHHHHHHHHhh----------hccccccccCCceEEEEEECCCCCH
Confidence 99999999999999874 5589999999999999999999863 344555 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCC
Q 010179 324 AAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPE 402 (516)
Q Consensus 324 ~~r~~a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~ 402 (516)
.+|++++|+|+|+|||||| +|+||||++||+||||+|+||||+++||||+++||||++|++|++|||||++.
T Consensus 231 ~~r~~~~~~a~tiAEyfrd~~G~dVLll~DsitR~A~A~rEis~~lge~P~~~GYpp~l~~~l~~l~ERag~~------- 303 (482)
T 2ck3_D 231 GARARVALTGLTVAEYFRDQEGQDVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMGTMQERITTT------- 303 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSCEEEEEECTHHHHHHHHHHHGGGTCCCCGGGCCTTHHHHHHHHHTTSSCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHhhhhcCCCCccccCchhHHHHhHHHHHhhcCC-------
Confidence 9999999999999999999 99999999999999999999999999999999999999999999999999952
Q ss_pred CCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchh-hhhhhhhcCCHHHHHHHHH
Q 010179 403 RTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYST-ALESFYEQFDPDFINIRTK 481 (516)
Q Consensus 403 ~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~-~l~~~~~~~~~~~~~~~~~ 481 (516)
++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+ .+ ++++|++.+++
T Consensus 304 ~~GSIT~i~tv~v~~dD~tdPi~d~~~~i~dG~ivLsr~La~~giyPAIDvl~S~SR~~~~~i------~~~~~~~~a~~ 377 (482)
T 2ck3_D 304 KKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRAIAELGIYPAVDPLDSTSRIMDPNI------VGSEHYDVARG 377 (482)
T ss_dssp SSCCEEEEEEEECGGGCTTSHHHHHHGGGCSEEEEBCHHHHTTTCSSCBCTTSCEETTCSHHH------HCHHHHHHHHH
T ss_pred CCCceeeeEEEEecCCCCCCccHHHHHHhcCeEEEEcHHHHhCCCCCccCcccccccCCCccc------CCHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999874 34 78999999999
Q ss_pred HHHHHHhhhhHHHHHH-cCCC
Q 010179 482 AREVLQREDDLNEIVQ-VGYL 501 (516)
Q Consensus 482 ~r~~L~~y~e~~~li~-~G~~ 501 (516)
+|++|++|+|+++||+ +|++
T Consensus 378 lr~~la~y~el~~li~i~G~~ 398 (482)
T 2ck3_D 378 VQKILQDYKSLQDIIAILGMD 398 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhhhHHHHHHHHhCCC
Confidence 9999999999999999 7876
No 13
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=100.00 E-value=1.3e-100 Score=820.45 Aligned_cols=371 Identities=28% Similarity=0.416 Sum_probs=341.1
Q ss_pred eeeEEEEEECceEEEEeCC--CCccccEEEEcC----C---ceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCcc
Q 010179 20 EYGYVRKVSGPVVIADGMN--GAAMYELVRVGH----D---NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKPL 89 (516)
Q Consensus 20 ~~G~V~~I~G~vv~a~Gl~--~~~iGE~v~I~~----~---~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~l 89 (516)
.+|+|++|.|++|+++|+. .+.+|+.|+|.. + .+.+||++ ++++.+.+++|++++||++|++|.+||+++
T Consensus 19 ~~G~v~~V~G~vv~v~~~~~~~~~i~~~~~i~~~~~~g~~~~~~~eV~~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~ 98 (498)
T 1fx0_B 19 NLGRIAQIIGPVLNVAFPPGKMPNIYNALIVKGRDTAGQPMNVTCEVQQLLGNNRVRAVAMSATDGLTRGMEVIDTGAPL 98 (498)
T ss_dssp CCEEEEEEETTEEEEECCSSCCCCTTCEEEECCCSSSSCCCCCEEEEEECCSSSCEEEEESSCCTTCCTTCEEEECSSSC
T ss_pred CCceEEEEEccEEEEEeCCCCccccccEEEEEeCCCCCcccceEEEEEEEecCCeEEEEEecCccCCCCCCEEEecCCcc
Confidence 3699999999999999974 478999999952 2 47899999 889999999999999999999999999999
Q ss_pred eeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeecccccccccc
Q 010179 90 SVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHVA 169 (516)
Q Consensus 90 sVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~~ 169 (516)
+||||++|||||||++|+|||+.++ +.
T Consensus 99 ~vpvG~~lLGRV~d~lG~PiD~~~~---------------i~-------------------------------------- 125 (498)
T 1fx0_B 99 SVPVGGPTLGRIFNVLGEPVDNLRP---------------VD-------------------------------------- 125 (498)
T ss_dssp EEEESSTTTTCEECTTSCBCSSSSC---------------CC--------------------------------------
T ss_pred eEecCccceeeEEcccccCCCCcCC---------------cC--------------------------------------
Confidence 9999999999999999999998421 00
Q ss_pred CCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCCC-cccccCCCccccccccccccccccccCCcc
Q 010179 170 LPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGGTC 248 (516)
Q Consensus 170 ~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGqr~ 248 (516)
..++||++.++| +.+|.++++||+||||+||+|+|||||||+
T Consensus 126 -------------------------------------~~~~~pi~~~~p~~~~r~~~~e~l~TGirvID~l~pigkGqr~ 168 (498)
T 1fx0_B 126 -------------------------------------TRTTSPIHRSAPAFTQLDTKLSIFETGIKVVNLLAPYRRGGKI 168 (498)
T ss_dssp -------------------------------------CSEEEESCCCCCCGGGCCCCCCCCCCSCTTHHHHSCCCTTCCE
T ss_pred -------------------------------------CCceeccccCCCchhhhcccccccccceeEeeeecccccCCeE
Confidence 014689977666 789999999999999999999999999999
Q ss_pred ccCCCCCCCchHhHHHhhhcc---CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcc-------eEEEEEeC
Q 010179 249 AIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMK-------RTTLVANT 318 (516)
Q Consensus 249 ~I~g~~g~GKT~Ll~~ia~~~---~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~-------rtvvv~~t 318 (516)
+|||++|+|||+|+++|++|. ++|++||++||||+||++||+++| .+.++|+ ||+||++|
T Consensus 169 gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER~rEv~e~~~~~----------~~~~~l~~~~l~~~rtvvV~~t 238 (498)
T 1fx0_B 169 GLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGERTREGNDLYMEM----------KESGVINEQNIAESKVALVYGQ 238 (498)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCCSHHHHHHHHHH----------HHTTSSCSSTTCCCCEEEEEEC
T ss_pred EeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccCcHHHHHHHHhh----------hcccccccccccccceEEEEeC
Confidence 999999999999999999873 458999999999999999999986 3445565 99999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCccc
Q 010179 319 SNMPVAAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKC 397 (516)
Q Consensus 319 sd~~~~~r~~a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~ 397 (516)
+|+||.+|++++|+|+|+|||||| +|+||||++||+||||+|+||||+++||+|+++||||++|++|++||||||+.
T Consensus 239 ~d~p~~~R~~~~~~altiAEyfrd~~G~dVLl~~DsitR~A~A~rEvs~~lge~Ps~~GYpp~l~~~l~~L~ERag~~-- 316 (498)
T 1fx0_B 239 MNEPPGARMRVGLTALTMAEYFRDVNEQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSLQERITST-- 316 (498)
T ss_dssp TTSCHHHHTTHHHHHHHTHHHHTTTSCCEEEEEEECSHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHTSSSSSCC--
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHhccCC--
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999963
Q ss_pred CCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHH
Q 010179 398 LGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFIN 477 (516)
Q Consensus 398 ~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~ 477 (516)
++||||+|+||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+. ++ ++++|++
T Consensus 317 -----~~GSIT~i~tV~v~~dD~tdPi~d~~~~ilDG~ivLsR~La~~giyPAID~l~S~SR~~~~---~i--~~~~h~~ 386 (498)
T 1fx0_B 317 -----KEGSITSIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP---RI--VGEEHYE 386 (498)
T ss_dssp -----TTCEECCEEEEECGGGCSSSHHHHHHHTTCSEEEEBCSTTTTTTCSSCBCSSSCCBTTCST---TT--TCHHHHH
T ss_pred -----CCCceeeeEEEEccCCCcCCcchHHHHHhhCceEEehhhHHhCCCCceeccccccccCCCc---cc--CCHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999998643 22 7899999
Q ss_pred HHHHHHHHHHhhhhHHHHHH-cCCCc
Q 010179 478 IRTKAREVLQREDDLNEIVQ-VGYLW 502 (516)
Q Consensus 478 ~~~~~r~~L~~y~e~~~li~-~G~~~ 502 (516)
.++++|++|++|+|+++||+ +|+|.
T Consensus 387 ~a~~lr~~la~y~el~~li~i~G~d~ 412 (498)
T 1fx0_B 387 IAQRVKETLQRYKELQDIIAILGLDE 412 (498)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCc
Confidence 99999999999999999999 78763
No 14
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=100.00 E-value=5.7e-93 Score=759.92 Aligned_cols=368 Identities=30% Similarity=0.471 Sum_probs=340.6
Q ss_pred eeEEEEEECceEEEEeCC--CCccccEEEEcC----C-----ceEEEEEE-EeCCeEEEEEcccccCCCCCCeEEEcCCc
Q 010179 21 YGYVRKVSGPVVIADGMN--GAAMYELVRVGH----D-----NLIGEIIR-LEGDSATIQVYEETAGLMVNDPVLRTHKP 88 (516)
Q Consensus 21 ~G~V~~I~G~vv~a~Gl~--~~~iGE~v~I~~----~-----~l~gEVv~-~~~d~v~l~~~~~t~GI~~G~~V~~tg~~ 88 (516)
+|+|++|.|++|+++|+. .+++||.|+|.. + .+.+||++ ++++.+.+++|+++.||++|++|++||++
T Consensus 3 ~G~v~~v~G~vv~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~ev~~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~ 82 (473)
T 1sky_E 3 RGRVIQVMGPVVDVKFENGHLPAIYNALKIQHKARNENEVDIDLTLEVALHLGDDTVRTIAMASTDGLIRGMEVIDTGAP 82 (473)
T ss_dssp EEEEEEEETTEEEEEESTTCCCCTTEEEEEEECCSSTTCCCEEEEEEEEEEEETTEEEEEESSCCTTCCTTCEEEEEEEE
T ss_pred ceEEEEEECcEEEEEecCCcccccCCEEEEEecCCCCCccccceEEEEeEEecCCcEEEEEecCccCCCCCCEEEEcCCc
Confidence 699999999999999973 479999999953 2 37899998 99999999999999999999999999999
Q ss_pred ceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccccccc
Q 010179 89 LSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLMQHHV 168 (516)
Q Consensus 89 lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~~~~~ 168 (516)
++||||++|||||||++|+|||+.++ +.
T Consensus 83 ~~vpvg~~llGrv~d~lG~piD~~g~---------------i~------------------------------------- 110 (473)
T 1sky_E 83 ISVPVGQVTLGRVFNVLGEPIDLEGD---------------IP------------------------------------- 110 (473)
T ss_dssp CEEECSGGGTTCEECTTSCBCSSSCC---------------CC-------------------------------------
T ss_pred ceeeccccceeeEEeecCCccCcccc---------------cC-------------------------------------
Confidence 99999999999999999999998421 00
Q ss_pred cCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeecc-ccccccCCCC-cccccCCCccccccccccccccccccCC
Q 010179 169 ALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTML-QAWPVRTPRP-VSSKLAADTPLLTGQRVLDALFPSVLGG 246 (516)
Q Consensus 169 ~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~-~~wpv~~~~p-~~~R~~~~epl~TGiraID~l~pigkGq 246 (516)
.. ++||++.++| +.+|.++++||+||||+||.|+|+++||
T Consensus 111 --------------------------------------~~~~~~pi~~~~p~~~~r~~~~e~l~TGir~ID~L~pi~kGq 152 (473)
T 1sky_E 111 --------------------------------------ADARRDPIHRPAPKFEELATEVEILETGIKVVDLLAPYIKGG 152 (473)
T ss_dssp --------------------------------------TTSCEEESCCCCCCGGGBCCSCCEECCSCHHHHHHSCEETTC
T ss_pred --------------------------------------CCceeecccccCcchhhhcccCccccccchHHHHHhhhccCC
Confidence 01 4688877766 6899999999999999999999999999
Q ss_pred ccccCCCCCCCchHhHHHhhhcc---CCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV 323 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~---~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~ 323 (516)
|++|||++|+|||+|+.+|+++. ..+++||++||||++|+++|+++| .+.++|+||++|++++++||
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~iGerttev~el~~~l----------~~~~~l~~tvvv~~~~~d~p 222 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYHEM----------KDSGVISKTAMVFGQMNEPP 222 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHH----------HHTSGGGGEEEEEECTTSCH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeeeccCchHHHHHHHHh----------hhcCCcceeEEEEEcCCCCH
Confidence 99999999999999999998764 468899999999999999999875 45678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-CCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCC
Q 010179 324 AAREASIYTGITIAEYFRD-MGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPE 402 (516)
Q Consensus 324 ~~r~~a~~~a~tiAEyfrd-~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~ 402 (516)
+.|++++++++++|||||| +|+||||++||+||||+|+||||+++||||+++||||++|+.|++|||||++.
T Consensus 223 g~r~~~~~~~ltiAEyFrd~~G~~VLl~~D~itR~a~A~reis~~~ge~P~~~GYp~~~~~~l~~l~ERa~~~------- 295 (473)
T 1sky_E 223 GARMRVALTGLTMAEYFRDEQGQDGLLFIDNIFRFTQAGSEVSALLGRMPSAIGYQPTLATEMGQLQERITST------- 295 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCEEEEEEECTHHHHHHHHHHHHHHTCCCCGGGCCTTHHHHHHHHHTTSSCB-------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHHHHHHHhhcCCCCccccCCchhhhHHHHHHHHhcCC-------
Confidence 9999999999999999999 89999999999999999999999999999999999999999999999999963
Q ss_pred CCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhh-hhhhhhcCCHHHHHHHHH
Q 010179 403 RTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTA-LESFYEQFDPDFINIRTK 481 (516)
Q Consensus 403 ~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~-l~~~~~~~~~~~~~~~~~ 481 (516)
++||||+++||++|+||++|||+|++++|+||||+|||+||++||||||||+.|+||+|+. + ++++|++.+++
T Consensus 296 ~~GSIT~i~tv~~~~dD~~dpi~~~~~~i~dg~ivLsr~La~~g~yPAId~l~S~SR~~~~~~------~~~~~~~~a~~ 369 (473)
T 1sky_E 296 AKGSITSIQAIYVPADDYTDPAPATTFSHLDATTNLERKLAEMGIYPAVDPLVSTSRALAPEI------VGEEHYQVARK 369 (473)
T ss_dssp SSCEEEEEEECCCSTTCSSSHHHHHHHTTCSEEEEBCTTHHHHTCSSCBCTTTCCBTTCCHHH------HHHHHHHHHHH
T ss_pred CCCceEEEEEEEecCCCCCCcchHHHHhhcCceEEecHHHHhCCCCCccccccccccccchhc------CCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999998743 4 67999999999
Q ss_pred HHHHHHhhhhHHHHHH-cCCC
Q 010179 482 AREVLQREDDLNEIVQ-VGYL 501 (516)
Q Consensus 482 ~r~~L~~y~e~~~li~-~G~~ 501 (516)
+|++|++|+|+++|++ +|.+
T Consensus 370 lr~~la~y~e~~~li~i~g~~ 390 (473)
T 1sky_E 370 VQQTLERYKELQDIIAILGMD 390 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHhHHHHHHHHHhhCcc
Confidence 9999999999999999 6763
No 15
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=100.00 E-value=8.7e-73 Score=589.13 Aligned_cols=275 Identities=17% Similarity=0.248 Sum_probs=250.5
Q ss_pred eEEEEE-EcCeeeeeeccccccccCCCC--cccccCCC-ccccccccccccccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 192 TVLELE-FQGVKKSFTMLQAWPVRTPRP--VSSKLAAD-TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 192 ~v~~~~-~~g~~~~~~~~~~wpv~~~~p--~~~R~~~~-epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
++.+++ +||...+ ....++++....| +.+|..+. +|++||+|+||+|+|||||||++|||++|+|||+|+++|++
T Consensus 119 ~l~~v~~vng~~p~-~~~~r~~fe~l~Pi~P~~R~~le~e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~ 197 (427)
T 3l0o_A 119 AMIKIEAINYRPVE-AVNDRVNFDNLTPDYPRERFILETDPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIAN 197 (427)
T ss_dssp EEEEEEEETTEEC-----CCCCGGGSCEECCCSBCCCCCSTTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred cceEEEecCCCChH-HhccccccccCCCCCchhhccccccchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHH
Confidence 456666 6776544 3345556655444 57999998 99999999999999999999999999999999999999998
Q ss_pred cc---CCCE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC
Q 010179 268 YS---NSDT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM 343 (516)
Q Consensus 268 ~~---~~d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~ 343 (516)
+. +.|+ |||++||||++||++|++++ . .+||++|+|+||.+|++++++|+|+||||||+
T Consensus 198 ~i~~~~~dv~~V~~lIGER~~EV~d~~~~~----------~-------G~VV~atadep~~~r~~~a~~altiAEyfrd~ 260 (427)
T 3l0o_A 198 GIAENHPDTIRIILLIDERPEEVTDIREST----------N-------AIVIAAPFDMPPDKQVKVAELTLEMAKRLVEF 260 (427)
T ss_dssp HHHHHCTTSEEEEEECSCCHHHHSSSSSSC----------C-------SEEEECCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhhcCCCeEEEEEEeccCcchHHHHHHHh----------C-------CeEEEECCCCCHHHHHHHHHHHHHHHHHHHHc
Confidence 73 4675 79999999999999998652 2 28999999999999999999999999999999
Q ss_pred CCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecC-CCCCCc
Q 010179 344 GYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSD 422 (516)
Q Consensus 344 G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~D~~d 422 (516)
|+|||+++||+||||+|+||||+++||+|+ +||||++++.+++||||||+++ ++||||+|+||+++ +||++|
T Consensus 261 G~dVLil~DslTR~A~A~rEvs~~~Ge~~s-~Gypp~~~~~~~~~~erA~~ie------~~GSIT~i~tvlvetgdd~~d 333 (427)
T 3l0o_A 261 NYDVVILLDSLTRLARVYNIVVPPSGKLLT-GGVDPAALYKPKRFFGAARNTR------EGGSLTIIATALVETGSKMDE 333 (427)
T ss_dssp TCEEEEEEECHHHHHHHHHHHSCCCSCCCS-SSCCSSCSHHHHHHHHTCEEES------SSCEEEEEEEEECSSSCSHHH
T ss_pred CCCEEEecccchHHHHHHHHHHHhcCCCCC-CCcCchhhcchHHHHHhhcccC------CCcceeEEEEEEecCCCCcCC
Confidence 999999999999999999999999999999 6999999999999999999984 78999999999999 899999
Q ss_pred hhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH
Q 010179 423 PVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ 497 (516)
Q Consensus 423 pv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~ 497 (516)
||+|++++|+||||+|||+||++||||||||+.|+||+|+.+ ++++|++.++++|++|++|++++++.+
T Consensus 334 pI~d~~~~i~dg~IvLsR~La~~giyPAIDvl~S~SR~~~~l------~~~~h~~~a~~lr~~la~y~e~e~l~~ 402 (427)
T 3l0o_A 334 VIFEEFKGTGNMELVLSRQLANKRIFPAINLLLSGTRREELL------LDEETLKKVWLLRRMLSAMTEEEGLTL 402 (427)
T ss_dssp HHHHHTTTCCSEEEEBCHHHHTTTCSSCBCSTTCEETTGGGT------SCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred cchHHhcccCCceEEEeHHHHhCCCCCccCcccccccccccc------CCHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 999999999999999999999999999999999999999998 899999999999999999999999998
No 16
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=100.00 E-value=1.9e-70 Score=572.36 Aligned_cols=251 Identities=20% Similarity=0.236 Sum_probs=236.9
Q ss_pred cccCCC----ccccccccccccccccccCCccccCCCCCCCchHhHHHhhhcc---CCCE-EEEEeeCCchhHHHHHHHh
Q 010179 221 SKLAAD----TPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS---NSDT-VVYVGCGERGNEMAEVLMD 292 (516)
Q Consensus 221 ~R~~~~----epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~---~~d~-~V~~~iGeR~~Ev~e~~~~ 292 (516)
+|..+. +|++||+|+||+++|+++|||++|||++|+|||||+++|+++. +.|+ +||++||||++||++|+++
T Consensus 146 er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~ 225 (422)
T 3ice_A 146 SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRL 225 (422)
T ss_dssp SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTT
T ss_pred CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHH
Confidence 566666 7999999999999999999999999999999999999998763 4565 8899999999999999864
Q ss_pred ccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCC
Q 010179 293 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMP 372 (516)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p 372 (516)
+ +++||++|+|+||.+|++++++|+|+||||||+|+|||+++||+||||+|+||+|+++||+|
T Consensus 226 ~-----------------~~~vV~atadep~~~r~~~a~~alt~AEyfrd~G~dVLil~DslTR~A~A~revs~~~Ge~p 288 (422)
T 3ice_A 226 V-----------------KGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVL 288 (422)
T ss_dssp C-----------------SSEEEEECTTSCHHHHHHHHHHHHHHHHHHHHTSCEEEEEEECHHHHHHHHHHHSCCSSCBC
T ss_pred h-----------------CeEEEEeCCCCCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEeCchHHHHHHHHHHHhcCCCC
Confidence 1 47999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecC-CCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCC
Q 010179 373 ADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPP-GGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSV 451 (516)
Q Consensus 373 ~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~-~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAI 451 (516)
+ +|||+++|+.+++||||||+++ ++||||+|+||++| +||++|||+|++++|+||||+|||+||++||||||
T Consensus 289 s-~Gyp~~~~~~~~rl~erA~~~~------~~GSIT~i~tvlv~tgdd~~dpI~d~~~~i~dg~ivLsR~La~~giyPAI 361 (422)
T 3ice_A 289 T-GGVDANALHRPKRFFGAARNVE------EGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAI 361 (422)
T ss_dssp S-SSCBHHHHHHHHHHHTTCEEES------SSCEEEEEEEECCSSSCHHHHHHHHHHHHHCSEEEEBCHHHHHTTCSSCB
T ss_pred C-CCcCHHHHhhhHHHHHhccccC------CCcceeEEEEEEecCCCcccchHHHHhcccCCceEEEcHHHHhcCCCCcc
Confidence 8 9999999999999999999974 68999999999999 89999999999999999999999999999999999
Q ss_pred ccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHH-cCCC
Q 010179 452 NWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQ-VGYL 501 (516)
Q Consensus 452 d~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~-~G~~ 501 (516)
||+.|+||+|+.+ ++++|++.++++|++|++|++++++.. +|..
T Consensus 362 Dvl~S~SR~~~~~------~~~~~~~~a~~lr~~la~~~e~~~~~~ll~~~ 406 (422)
T 3ice_A 362 DYNRSGTRKEELL------TTQEELQKMWILRKIIHPMGEIDAMEFLINKL 406 (422)
T ss_dssp CTTTCEESSGGGS------SCHHHHHHHHHHHHHHTTSCHHHHHHHHHHTT
T ss_pred Cccccccccchhh------CCHHHHHHHHHHHHHHHhCchHHHHHHHHHHh
Confidence 9999999999998 899999999999999999999999988 5543
No 17
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=100.00 E-value=5.8e-66 Score=549.72 Aligned_cols=371 Identities=26% Similarity=0.400 Sum_probs=337.2
Q ss_pred ceeeeEEEEEECceEEEEeCCCCccccEEEEcC--C----ceEEEEEEEeCCeEEEEEcccccCCCCCCeEEEcCC----
Q 010179 18 ESEYGYVRKVSGPVVIADGMNGAAMYELVRVGH--D----NLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHK---- 87 (516)
Q Consensus 18 ~~~~G~V~~I~G~vv~a~Gl~~~~iGE~v~I~~--~----~l~gEVv~~~~d~v~l~~~~~t~GI~~G~~V~~tg~---- 87 (516)
.+.+|+|++|.|++++++|+ ++++||+|+|.. + .+.|||++|++|++.+|+|++++||++|+.|.+||+
T Consensus 7 ~~~~g~v~~v~g~~~~~~~~-~~~~~e~~~~~~~~~~~~~~~~~ev~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~ 85 (438)
T 2dpy_A 7 VRRYGRLTRATGLVLEATGL-QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDG 85 (438)
T ss_dssp CCCCEEEEECSSSSEEEESC-CCCSSCEEEEEECSTTSCEEEEEEEEECCTTCEEEEESSCCTTCCTTEEEEEC------
T ss_pred cceeeEEEEEECcEEEEEeC-CCCCCCEEEEecCCCCccccEEEEEEEEcCCEEEEEEccCCCCCCCCCEEEECCCcccc
Confidence 45789999999999999998 899999999963 2 488999999999999999999999999999999999
Q ss_pred ---cceeecCcccccccccccCCccccccccCCCccccCCCccCCCCcCccccccccccccCccccCCcceeeeeccccc
Q 010179 88 ---PLSVELGPGILGNIFDGIQRPLKTIAIRSGDVYIPRGVSVPALDKDTLWEFQPKKIGEGDLLTGGDLYATVFENSLM 164 (516)
Q Consensus 88 ---~lsVpvG~gLLGrV~DglGrPLd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~g~~v~~g~i~g~~~e~~~~ 164 (516)
++++++|+++||||+|++|+|+|+.+. +..
T Consensus 86 ~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~---------------~~~-------------------------------- 118 (438)
T 2dpy_A 86 LQSGKQLPLGPALLGRVLDGGGKPLDGLPA---------------PDT-------------------------------- 118 (438)
T ss_dssp ----CEEECSGGGTTEEECTTCCBSSSSCC---------------CCC--------------------------------
T ss_pred ccccEEEEcchhhhhhhhhccCCccCCCCC---------------ccc--------------------------------
Confidence 999999999999999999999987421 100
Q ss_pred cccccCCCCCCCceEEecCCCCccccceEEEEEEcCeeeeeeccccccccCCC-CcccccCCCccccccccccccccccc
Q 010179 165 QHHVALPPDAMGKVTYVAPAGQYSLKDTVLELEFQGVKKSFTMLQAWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSV 243 (516)
Q Consensus 165 ~~~~~~pp~~~g~v~~i~~~g~~~~~~~v~~~~~~g~~~~~~~~~~wpv~~~~-p~~~R~~~~epl~TGiraID~l~pig 243 (516)
..+||+..++ +++++..++.++.||+++||.++|++
T Consensus 119 -------------------------------------------~~~~~i~~~~~~~l~~~~v~~~~~tg~~vld~vl~i~ 155 (438)
T 2dpy_A 119 -------------------------------------------LETGALITPPFNPLQRTPIEHVLDTGVRAINALLTVG 155 (438)
T ss_dssp -------------------------------------------SCEEESCCCCCCTTTSCCCCSBCCCSCHHHHHHSCCB
T ss_pred -------------------------------------------cccccccCCCCCceEEeccceecCCCceEEeeeEEec
Confidence 0246766443 57899999999999999999999999
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCH
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV 323 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~ 323 (516)
+||+++|+|++|+|||||+.+|+++.+++..+|.++|+|++|+.++.+++ .+...++|++.+++++++++
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~----------~~~~~l~r~i~~v~q~~~~~ 225 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENI----------LGPDGRARSVVIAAPADVSP 225 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTT----------THHHHHHTEEEEEECTTSCH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhh----------ccccccCceEEEEECCCCCH
Confidence 99999999999999999999999999999999999999999999988642 23345789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCC
Q 010179 324 AAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPER 403 (516)
Q Consensus 324 ~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~ 403 (516)
..++.+++.++++||||++++++|+.++|+++||+.++|++++++++||...|||++.++.+.+++||+++.+ .+
T Consensus 226 ~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~qrvslAl~~p~~t~glD~~~~~~l~~ll~r~~~~~-----~~ 300 (438)
T 2dpy_A 226 LLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGI-----HG 300 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHHHHHHHHTTCCCCSSSCCTTHHHHHHHHHTTCSCCS-----TT
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHHHHhcc-----CC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998631 03
Q ss_pred CCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCCCCCccccccccchhhhhhhhhcCCHHHHHHHHHHH
Q 010179 404 TGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSTALESFYEQFDPDFINIRTKAR 483 (516)
Q Consensus 404 ~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~yPAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r 483 (516)
+||||+++||+++++|+++|++|++..+.||+|++|+.+++.++|||||++.|+||+++.+ .+++|+++++++|
T Consensus 301 ~GsiT~~~tVlv~tHdl~~~iad~v~~l~dG~Ivl~~~~~~~~~~Paidv~~s~sR~~~~~------~~~~~~~~~~~l~ 374 (438)
T 2dpy_A 301 GGSITAFYTVLTEGDDQQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTAL------ITEQHYARVRLFK 374 (438)
T ss_dssp SCEEEEEEEEECSSSCSCCHHHHHHHHHSSEEEEECHHHHHTTCSSCEEEEEEEETTHHHH------SCHHHHHHHHHHH
T ss_pred CCcccceeEEEEeCCCccchhhceEEEEeCcEEEEeCCHHHccCCCCcCCccccccccccc------CCHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999998876 8999999999999
Q ss_pred HHHHhhhhHHHHHHcCC
Q 010179 484 EVLQREDDLNEIVQVGY 500 (516)
Q Consensus 484 ~~L~~y~e~~~li~~G~ 500 (516)
++|++|+++++++++|.
T Consensus 375 ~~l~~~~~~~~~~~~~~ 391 (438)
T 2dpy_A 375 QLLSSFQRNRDLVSVGA 391 (438)
T ss_dssp HHHHHHHHGGGTSSSSC
T ss_pred HHHHhhHHHHHHHHhcC
Confidence 99999999999999654
No 18
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=100.00 E-value=1.8e-60 Score=493.64 Aligned_cols=267 Identities=27% Similarity=0.433 Sum_probs=252.3
Q ss_pred cccccCCC-CcccccCCCccccccccccccccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHH
Q 010179 210 AWPVRTPR-PVSSKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAE 288 (516)
Q Consensus 210 ~wpv~~~~-p~~~R~~~~epl~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e 288 (516)
+||++.++ ++++|..+++++.||+++||.++|+++||+++|+|++|+|||||+.+|+++.++|..++.++|+|++|+.+
T Consensus 35 ~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~ 114 (347)
T 2obl_A 35 ERSLYAEPPDPLLRQVIDQPFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNE 114 (347)
T ss_dssp EEESCCCCSCSTTCCCCCSEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHH
T ss_pred cccccCCCCCCeeecccceecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHH
Confidence 57887666 47899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhc
Q 010179 289 VLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRL 368 (516)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ 368 (516)
++..+ +.+.+++++++++++++|+.+|+.+++.++++||||+++|+||++++|+++||++|+|++++++
T Consensus 115 ~i~~~-----------~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~lal 183 (347)
T 2obl_A 115 FLALL-----------PQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAARDVGLAS 183 (347)
T ss_dssp HHTTS-----------CHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHHHHHHHHT
T ss_pred HHHhh-----------hhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHHHHHHHHc
Confidence 88641 2246889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCCCCCCchhhHhhhccccEEEEeeHhhhhcCCC
Q 010179 369 AEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHF 448 (516)
Q Consensus 369 ge~p~~~gyp~~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~~D~~dpv~~~~~~i~d~~ivLsr~La~~g~y 448 (516)
++||.+.||||++++.+.+|+||+++. ++||||+++||+++++|+++|++|++..+.||+|+||+.+++.++|
T Consensus 184 ~~p~~t~Gldp~~~~~l~~ller~~~~-------~~GsiT~~~tVl~~thdl~~~i~d~v~~i~dG~Ivl~~~l~~~~~~ 256 (347)
T 2obl_A 184 GEPDVRGGFPPSVFSSLPKLLERAGPA-------PKGSITAIYTVLLESDNVNDPIGDEVRSILDGHIVLTRELAEENHF 256 (347)
T ss_dssp TCCCCBTTBCHHHHHHHHHHHTTCEEC-------SSSEEEEEEEEECCSSCCCCHHHHHHHHHCSEEEEBCHHHHTTTCS
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHhCC-------CCCCeeeEEEEEEeCCCCCChhhhheEEeeCcEEEEeCCHHHcCCC
Confidence 999999999999999999999999862 4699999999999999999999999999999999999999999999
Q ss_pred CCCccccccccchhhhhhhhhcCCHHHHHHHHHHHHHHHhhhhHHHHHHcCC
Q 010179 449 PSVNWLISYSKYSTALESFYEQFDPDFINIRTKAREVLQREDDLNEIVQVGY 500 (516)
Q Consensus 449 PAId~l~S~SR~~~~l~~~~~~~~~~~~~~~~~~r~~L~~y~e~~~li~~G~ 500 (516)
||||++.|+||+++.+ ++++|++.+.++|++|++|+++++++++|.
T Consensus 257 Paid~~~S~sr~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 302 (347)
T 2obl_A 257 PAIDIGLSASRVMHNV------VTSEHLRAAAECKKLIATYKNPELLIRIGE 302 (347)
T ss_dssp SCBCGGGCEETTHHHH------SCHHHHHHHHHHHHHHHHCCCTHHHHTTTC
T ss_pred CCcCcccccccccccc------CCHHHHHHHHHHHHHHHccHHHHHHHHhcC
Confidence 9999999999999988 899999999999999999999999999654
No 19
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.67 E-value=4.5e-05 Score=71.12 Aligned_cols=62 Identities=23% Similarity=0.336 Sum_probs=47.5
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCC--chhHHHHHHH
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE--RGNEMAEVLM 291 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGe--R~~Ev~e~~~ 291 (516)
+.||++.+|-++. +-+|+.++|.|++|+|||||+.+++. ....-++|...-+ ....+.+..+
T Consensus 2 i~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~~~~~~~~~~~~~ 67 (220)
T 2cvh_A 2 LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEGGFSPERLVQMAE 67 (220)
T ss_dssp BCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSCCCCHHHHHHHHH
T ss_pred cccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCCCCCHHHHHHHHH
Confidence 5799999999996 99999999999999999999999987 3333455554444 4445555444
No 20
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.65 E-value=0.00011 Score=68.95 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=37.9
Q ss_pred cccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 227 epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.||+..+|-++ -+-+|+.++|.|++|+|||||+.+|+..
T Consensus 5 ~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 5 GRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp CEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999887 6889999999999999999999999863
No 21
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.58 E-value=0.00012 Score=69.21 Aligned_cols=66 Identities=21% Similarity=0.304 Sum_probs=52.8
Q ss_pred ccccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--C-CCEEEEEeeCCchhHHHHHHHh
Q 010179 227 TPLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--N-SDTVVYVGCGERGNEMAEVLMD 292 (516)
Q Consensus 227 epl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~-~d~~V~~~iGeR~~Ev~e~~~~ 292 (516)
+-+.||++.+|-++. +-+|+-+.|.|+||+|||+|+.+++.+. . ...++|.-..+..+++.+-...
T Consensus 10 ~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~~~~~~~~~~ 80 (251)
T 2zts_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMAS 80 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHT
T ss_pred CeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCHHHHHHHHHH
Confidence 347899999999997 8899999999999999999999876542 2 3347777777888777765543
No 22
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.57 E-value=0.00013 Score=69.00 Aligned_cols=42 Identities=31% Similarity=0.425 Sum_probs=38.3
Q ss_pred cccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 227 epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.||+..+|-++ -+-+|+-++|.|++|+|||||+.+|+.+
T Consensus 4 ~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 4 IQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp CEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45789999999999 5889999999999999999999998874
No 23
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.30 E-value=0.00053 Score=70.05 Aligned_cols=121 Identities=17% Similarity=0.221 Sum_probs=72.9
Q ss_pred Ccccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhcc--------CCCEEEEEeeCC--chhHHHHHHHhc
Q 010179 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--------NSDTVVYVGCGE--RGNEMAEVLMDF 293 (516)
Q Consensus 226 ~epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--------~~d~~V~~~iGe--R~~Ev~e~~~~~ 293 (516)
.+.+.||++.+|.++ -+-+|+-+.|+|++|+|||+|+.+++.+. ...-++|.-.-+ +...+.+..+.+
T Consensus 101 ~~~i~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 101 VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp CCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred cceeecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 456899999999998 47899999999999999999999888753 123455554433 255666665542
Q ss_pred cccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEecchHHHHH
Q 010179 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEA 360 (516)
Q Consensus 294 ~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A 360 (516)
.+ .....+++- .+....+-.-.... .-.+.+.+++. +.--+|++||++.+..+
T Consensus 181 -----g~---~~~~~l~~l-~~~~~~~~e~~~~l-----l~~l~~~i~~~~~~~~lvVIDsl~~l~~~ 234 (343)
T 1v5w_A 181 -----NV---DHDAVLDNV-LYARAYTSEHQMEL-----LDYVAAKFHEEAGIFKLLIIDSIMALFRV 234 (343)
T ss_dssp -----TC---CHHHHHHTE-EEEECCSTTHHHHH-----HHHHHHHHHHSCSSEEEEEEETSGGGHHH
T ss_pred -----CC---CHHHHHhce-eEeecCCHHHHHHH-----HHHHHHHHHhcCCCccEEEEechHHHHHH
Confidence 01 111233443 33332221111110 11223444442 44458899999988754
No 24
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.28 E-value=0.00015 Score=68.71 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=47.7
Q ss_pred cccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhh--c-cCCCEEEEEeeCCchhHHHHHHH
Q 010179 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK--Y-SNSDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 227 epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~--~-~~~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
+.+.||+..+|-++ -+-+|+.++|.|++|+|||||+.+|+. . ....-++|..-.+...++.+...
T Consensus 10 ~~i~tg~~~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T 2ehv_A 10 RRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMA 79 (251)
T ss_dssp CEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHH
T ss_pred ceeecCCHhHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHH
Confidence 44789999999998 699999999999999999999998883 2 22223455544555555555443
No 25
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.26 E-value=0.00061 Score=68.87 Aligned_cols=120 Identities=20% Similarity=0.202 Sum_probs=73.2
Q ss_pred Ccccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhccC--------CCEEEEEeeCCc--hhHHHHHHHhc
Q 010179 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYSN--------SDTVVYVGCGER--GNEMAEVLMDF 293 (516)
Q Consensus 226 ~epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~--------~d~~V~~~iGeR--~~Ev~e~~~~~ 293 (516)
...+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+.+++.+.. ..-++|.-.-+. ...+.+..+.+
T Consensus 86 ~~~i~TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 86 VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp CCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcccCCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 456899999999998 578999999999999999999999886531 234555544332 56676666543
Q ss_pred cccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHH-HHHHHCCCcEEEEEecchHHHHH
Q 010179 294 PQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIA-EYFRDMGYNVSMMADSTSRWAEA 360 (516)
Q Consensus 294 ~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiA-Eyfrd~G~~Vlll~Dsltr~a~A 360 (516)
. + .....+++ +.+....+ ..+.. ..+..+ +.+++.+.--+|++||++.+..+
T Consensus 166 ---g--~---~~~~~~~~-l~~~~~~~--~~~~~----~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 166 ---G--L---DIDNVMNN-IYYIRAIN--TDHQI----AIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp ---T--C---CHHHHHHT-EEEEECCS--HHHHH----HHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred ---C--C---CHHHHhcc-EEEEeCCC--HHHHH----HHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 0 1 11112233 33333322 11111 122233 33444245558899999987754
No 26
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.14 E-value=0.0034 Score=65.86 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=38.2
Q ss_pred CCcccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhh
Q 010179 225 ADTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 225 ~~epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
....+.||+..+|.++ -+-+|+-+.|+|++|+|||||+.+++-
T Consensus 156 ~~~~i~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 156 ELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSCEECCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCccccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3457899999999998 688999999999999999999998763
No 27
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.13 E-value=0.00049 Score=70.58 Aligned_cols=108 Identities=11% Similarity=0.081 Sum_probs=67.0
Q ss_pred ccccccccccccccc------cccCCccccCCCCCCCchHhHHHhhhcc-C---CCEEEEEeeCCchhHHHHHHHhcccc
Q 010179 227 TPLLTGQRVLDALFP------SVLGGTCAIPGAFGCGKTVISQALSKYS-N---SDTVVYVGCGERGNEMAEVLMDFPQL 296 (516)
Q Consensus 227 epl~TGiraID~l~p------igkGqr~~I~g~~g~GKT~Ll~~ia~~~-~---~d~~V~~~iGeR~~Ev~e~~~~~~~~ 296 (516)
+.+.||+..+|.++- +-+| .+.|+|++|+|||+|+.+++.+. . ...++|+-.-+..+.. ..+.+
T Consensus 5 ~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~--ra~~l--- 78 (333)
T 3io5_A 5 DVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA--YLRSM--- 78 (333)
T ss_dssp -CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH--HHHHT---
T ss_pred CEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH--HHHHh---
Confidence 457899999999998 7799 99999999999999988766543 1 4567776544433322 23332
Q ss_pred ccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHH--HHCCCcEEEEEecchHHH
Q 010179 297 TMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYF--RDMGYNVSMMADSTSRWA 358 (516)
Q Consensus 297 ~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyf--rd~G~~Vlll~Dsltr~a 358 (516)
+-+ .++ ++++...+ .++. ++.+++.+ ...+.--++++||++-+.
T Consensus 79 --------Gvd-~d~-llv~~~~~---~E~~-----~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 79 --------GVD-PER-VIHTPVQS---LEQL-----RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------TCC-GGG-EEEEECSB---HHHH-----HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------CCC-HHH-eEEEcCCC---HHHH-----HHHHHHHHHHhhccCceEEEEecccccc
Confidence 111 233 33333221 1221 14445555 245677899999998553
No 28
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.12 E-value=0.00023 Score=66.41 Aligned_cols=65 Identities=26% Similarity=0.302 Sum_probs=49.4
Q ss_pred cccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHh
Q 010179 228 PLLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMD 292 (516)
Q Consensus 228 pl~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~ 292 (516)
.+.||++.+|-++. +.+|+-++|.|++|+|||||+.+|+... ...-++|....+...++.+.+..
T Consensus 4 ~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 72 (235)
T 2w0m_A 4 RLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQ 72 (235)
T ss_dssp EECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHH
T ss_pred cccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHH
Confidence 46899999999985 8899999999999999999999988542 22335555555556666555443
No 29
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.09 E-value=0.00081 Score=67.47 Aligned_cols=120 Identities=18% Similarity=0.136 Sum_probs=72.2
Q ss_pred Ccccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhcc-------------CC-----CEEEEEeeCCc--h
Q 010179 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS-------------NS-----DTVVYVGCGER--G 283 (516)
Q Consensus 226 ~epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~-------------~~-----d~~V~~~iGeR--~ 283 (516)
...+.||+..+|.++ -+-+|+-+.|+|++|+|||+|+.+++.+. .. .-++|.-.-+. .
T Consensus 77 ~~~i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~ 156 (322)
T 2i1q_A 77 VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRP 156 (322)
T ss_dssp CCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCH
T ss_pred CCeecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCH
Confidence 456889999999998 47799999999999999999999887642 11 23555544433 5
Q ss_pred hHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-CCcEEEEEecchHHHHH
Q 010179 284 NEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-GYNVSMMADSTSRWAEA 360 (516)
Q Consensus 284 ~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~-G~~Vlll~Dsltr~a~A 360 (516)
+.+.+..+.+ . + ..+..+++ +.+....+ ..... ..+...+.+..+ +.--+|++||++.+..+
T Consensus 157 ~~l~~~~~~~---g--~---~~~~~~~~-l~~~~~~~--~~~~~----~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 219 (322)
T 2i1q_A 157 ERIMQMAEHA---G--I---DGQTVLDN-TFVARAYN--SDMQM----LFAEKIEDLIQEGNNIKLVVIDSLTSTFRN 219 (322)
T ss_dssp HHHHHHHHHH---T--C---CHHHHHHT-EEEEECSS--HHHHH----HHHHTHHHHHHTTCEEEEEEEECSSHHHHH
T ss_pred HHHHHHHHHc---C--C---CHHHHhcC-EEEEeCCC--HHHHH----HHHHHHHHHHhhccCccEEEEECcHHHHHH
Confidence 6677666542 0 1 11112234 33333222 11111 122223333333 44458899999988754
No 30
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.04 E-value=0.0011 Score=67.96 Aligned_cols=119 Identities=19% Similarity=0.215 Sum_probs=72.4
Q ss_pred Ccccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhcc--C------CCEEEEEeeCCc---hhHHHHHHHh
Q 010179 226 DTPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--N------SDTVVYVGCGER---GNEMAEVLMD 292 (516)
Q Consensus 226 ~epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--~------~d~~V~~~iGeR---~~Ev~e~~~~ 292 (516)
.+.+.||+..+|.++ -+-+|+-++|+|++|+|||||+.+++... . ...+||. -+|. .+.+..+.+.
T Consensus 110 ~~~isTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i-~~e~~~~~~~i~~i~q~ 188 (349)
T 1pzn_A 110 IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWI-DTENTFRPERIREIAQN 188 (349)
T ss_dssp CCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEE-ESSSCCCHHHHHHHHHT
T ss_pred CCeecCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEE-eCCCCCCHHHHHHHHHH
Confidence 456789999999985 57799999999999999999999988764 2 1344554 3343 3556655554
Q ss_pred ccccccCCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHC-----CCcEEEEEecchHHHHH
Q 010179 293 FPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDM-----GYNVSMMADSTSRWAEA 360 (516)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~-----G~~Vlll~Dsltr~a~A 360 (516)
+ .+ ....++++-.+. ...+ +.... ..+..+..+..+ ..-=+|++||+|-.-++
T Consensus 189 ~-----~~---~~~~v~~ni~~~-~~~~--~~~~~----~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~ 246 (349)
T 1pzn_A 189 R-----GL---DPDEVLKHIYVA-RAFN--SNHQM----LLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRS 246 (349)
T ss_dssp T-----TC---CHHHHGGGEEEE-ECCS--HHHHH----HHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHH
T ss_pred c-----CC---CHHHHhhCEEEE-ecCC--hHHHH----HHHHHHHHHHHHhccccCCCCEEEEeCchHhhhh
Confidence 2 11 112344554333 2221 22211 223344444432 45558899999965544
No 31
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.90 E-value=0.00083 Score=69.12 Aligned_cols=109 Identities=16% Similarity=0.159 Sum_probs=66.7
Q ss_pred Cccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 010179 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (516)
Q Consensus 226 ~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~ 300 (516)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||||+.+++.+. ....++|.-..+..+.. ..+.+
T Consensus 39 ~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~--~a~~l------- 109 (349)
T 2zr9_A 39 ISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE--YAKKL------- 109 (349)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHT-------
T ss_pred CCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH--HHHHc-------
Confidence 3468999999999987 5599999999999999999999887542 23345555444433332 22221
Q ss_pred CCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHH
Q 010179 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (516)
Q Consensus 301 ~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a 358 (516)
+-. .++- .+.... + .++ .+.+++.+..++.--+|++||++.+.
T Consensus 110 ----G~~-~~~l-~i~~~~--~-~e~------~l~~~~~l~~~~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 110 ----GVD-TDSL-LVSQPD--T-GEQ------ALEIADMLVRSGALDIIVIDSVAALV 152 (349)
T ss_dssp ----TCC-GGGC-EEECCS--S-HHH------HHHHHHHHHTTTCCSEEEEECGGGCC
T ss_pred ----CCC-HHHe-EEecCC--C-HHH------HHHHHHHHHhcCCCCEEEEcChHhhc
Confidence 000 1222 233221 1 222 34456666655545578999999654
No 32
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.89 E-value=0.00095 Score=69.13 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=42.2
Q ss_pred ccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEe
Q 010179 227 TPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVG 278 (516)
Q Consensus 227 epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~ 278 (516)
+.+.||+..+|.++. +-+|.-+.|+|++|+|||||+.+++.+. ....++|.-
T Consensus 40 ~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 40 EVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp CEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 458899999999998 7799999999999999999999888653 223355543
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.80 E-value=0.00096 Score=70.87 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=39.4
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHH
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
+..++--++...++|.|++|+|||+|+..|++..+....-+...+....++.+.++
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~ 96 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIE 96 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHH
Confidence 33333334445689999999999999999999887766555555655556655544
No 34
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.00097 Score=62.93 Aligned_cols=64 Identities=20% Similarity=0.248 Sum_probs=48.3
Q ss_pred ccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHH
Q 010179 228 PLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLM 291 (516)
Q Consensus 228 pl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~ 291 (516)
.+.||++.+|-++ -+-+|+-++|.|++|+|||+|+.+++.+. ...-++|...-+...++.+...
T Consensus 4 ~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~~~~~~~~~~ 71 (247)
T 2dr3_A 4 RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEHPVQVRQNMA 71 (247)
T ss_dssp EECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSCHHHHHHHHH
T ss_pred cccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHH
Confidence 4689999999986 47799999999999999999988776542 2233666665666666666554
No 35
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.64 E-value=0.00094 Score=68.53 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=36.2
Q ss_pred CCcccccccccccccc-ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 225 ADTPLLTGQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 225 ~~epl~TGiraID~l~-pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+...+.||+..+|-++ -+-+|.-+.|.|+||+|||+|+.+++.+
T Consensus 102 i~~~i~TGi~~LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 102 LTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp SSTTCCSBCCEEEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred hhhccccCcHHHHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3344679999999987 2337777899999999999999999875
No 36
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.45 E-value=0.0026 Score=65.65 Aligned_cols=43 Identities=23% Similarity=0.246 Sum_probs=38.3
Q ss_pred Cccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 226 ~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+
T Consensus 41 ~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 41 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468899999999987 779999999999999999999988765
No 37
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.43 E-value=0.0026 Score=65.98 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=66.7
Q ss_pred Cccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhccccccCC
Q 010179 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTMTL 300 (516)
Q Consensus 226 ~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~ 300 (516)
.+.+.||+..+|.++. +-+|.-+.|.|++|+|||+|+.+++.+. ....++|.-.-+..... ..+.+
T Consensus 52 ~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~--~a~~~------- 122 (366)
T 1xp8_A 52 VQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV--YARAL------- 122 (366)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH--HHHHT-------
T ss_pred CceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH--HHHHc-------
Confidence 3568999999999987 6699999999999999999999887653 22335555544433333 12221
Q ss_pred CCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHH
Q 010179 301 PDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRW 357 (516)
Q Consensus 301 ~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~ 357 (516)
+-. .++ +.+..+ + . .+ ..+.+++.+...+.--+|++||++.+
T Consensus 123 ----g~d-~~~-l~i~~~-~-~-~e------~~l~~l~~l~~~~~~~lVVIDsl~~l 164 (366)
T 1xp8_A 123 ----GVN-TDE-LLVSQP-D-N-GE------QALEIMELLVRSGAIDVVVVDSVAAL 164 (366)
T ss_dssp ----TCC-GGG-CEEECC-S-S-HH------HHHHHHHHHHTTTCCSEEEEECTTTC
T ss_pred ----CCC-HHH-ceeecC-C-c-HH------HHHHHHHHHHhcCCCCEEEEeChHHh
Confidence 001 122 223322 2 1 12 23445566665554457899999854
No 38
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.33 E-value=0.011 Score=59.43 Aligned_cols=62 Identities=19% Similarity=0.086 Sum_probs=46.4
Q ss_pred ccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhcc-CC-CEEEEEeeCCchhHHHH
Q 010179 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS-NS-DTVVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~-~~-d~~V~~~iGeR~~Ev~e 288 (516)
..+.||++.+|-++- +-+|+-+.|.|+||+|||+|+.+++.+. .. .-++|.-.-+..+++.+
T Consensus 49 ~~i~TG~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~s~~~l~~ 113 (315)
T 3bh0_A 49 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 113 (315)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSSCHHHHHH
T ss_pred CCccCChHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCCCHHHHHH
Confidence 457899999999874 6799999999999999999999888553 22 23455544455555544
No 39
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.15 E-value=0.0092 Score=73.71 Aligned_cols=180 Identities=11% Similarity=0.141 Sum_probs=102.0
Q ss_pred CCCccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhc-c-CCCEEEEEeeCCchhHHHHHHHhcccccc
Q 010179 224 AADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKY-S-NSDTVVYVGCGERGNEMAEVLMDFPQLTM 298 (516)
Q Consensus 224 ~~~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~-~-~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~ 298 (516)
+..+.+.||+..+|-++. +-+|.-..|.|+||+|||+|+.+++.+ . ...-++|+-.-+...+.. .+.|
T Consensus 10 ~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~~~Ge~vlYI~tEes~~~~r--a~~l----- 82 (2050)
T 3cmu_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL----- 82 (2050)
T ss_dssp --CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH--HHHT-----
T ss_pred cCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhhccCCceEEEEccCcchhhH--Hhhh-----
Confidence 344678999999999985 779999999999999999999987654 2 234588887777666665 3332
Q ss_pred CCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCc
Q 010179 299 TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYP 378 (516)
Q Consensus 299 ~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp 378 (516)
+-. +++.. +... + ..+ ..+.+.+++.+.+.--+|++||++-+...... ...++.-+. +.-
T Consensus 83 ------G~d-l~~i~-v~~p-~--~~e------~ll~il~~L~~~~~~~lVVIDSISaL~~~~e~-~~e~~d~~~--~~r 142 (2050)
T 3cmu_A 83 ------GVD-IDNLL-CSQP-D--TGE------QALEICDALARSGAVDVIVVDSVAALTPKAEI-EGEIGDSHM--GLA 142 (2050)
T ss_dssp ------TCC-TTTCE-EECC-S--SHH------HHHHHHHHHHHHTCCSEEEESCGGGCCCHHHH-HSCSSSCCT--THH
T ss_pred ------ccC-cccce-ecCC-C--cHH------HHHHHHHHHHhccCCcEEEEcChHHhhhhccc-ccccccchh--hHH
Confidence 111 22322 3322 2 122 23455666766666678899999966544311 110111000 000
Q ss_pred c-hhHHHHHHHHHhhcCcccCCCCCCCCceeEEEEEecCC------CCCCchhhHhh-hccccEEEEeeH
Q 010179 379 A-YLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPG------GDFSDPVTSAT-LSIVQVFWGLDK 440 (516)
Q Consensus 379 ~-~l~s~l~~l~ERag~~~~~~~~~~~GSIT~i~~v~~~~------~D~~dpv~~~~-~~i~d~~ivLsr 440 (516)
. .+...+..|...+.. -.+|++.|-.+.. ++-..|..... .++.|+-|.|++
T Consensus 143 aR~l~~~l~~L~~~ak~----------~gitVVlTNQv~~~~g~~fg~~~~~~gG~~l~~iaD~VI~L~r 202 (2050)
T 3cmu_A 143 ARMMSQAMRKLAGNLKQ----------SNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRR 202 (2050)
T ss_dssp HHHHHHHHHHHHHHHHT----------TTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHH----------hCCeEEEEEecccccccccCcccccCCcchhhhhCcEEEEEEe
Confidence 0 122333444444442 2367777765532 12233443333 445699999876
No 40
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.97 E-value=0.0026 Score=57.94 Aligned_cols=34 Identities=24% Similarity=0.383 Sum_probs=27.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|+.+.+|+.++|.|++|+|||||+..|+...+..
T Consensus 3 m~~i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp ---CCTTEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 5678899999999999999999999999874433
No 41
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.75 E-value=0.0051 Score=74.95 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=73.2
Q ss_pred CCCccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHHHHHhcccccc
Q 010179 224 AADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAEVLMDFPQLTM 298 (516)
Q Consensus 224 ~~~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~ 298 (516)
...+.+.||+..+|-++. +-+|.-+.|+|++|+|||+|+.+++.+. ...-++|.-..+...+.. .+.+
T Consensus 10 ~~~~~isTGi~~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~--~~~l----- 82 (1706)
T 3cmw_A 10 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY--ARKL----- 82 (1706)
T ss_dssp --CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH--HHHT-----
T ss_pred ccCcccccCcHHHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHH--HHhh-----
Confidence 344668999999999975 8899999999999999999999887542 233478887777665554 2331
Q ss_pred CCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHH
Q 010179 299 TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEA 360 (516)
Q Consensus 299 ~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A 360 (516)
+-. +++-. +... + ..++ ...+.+.+.+.+..-+|++||++-+...
T Consensus 83 ------g~d-l~~i~-i~~p-~--t~e~------l~~ll~~L~~~~~~~LVVIDSLt~L~~~ 127 (1706)
T 3cmw_A 83 ------GVD-IDNLL-CSQP-D--TGEQ------ALEICDALARSGAVDVIVVDSVAALTPK 127 (1706)
T ss_dssp ------TCC-GGGCE-EECC-S--SHHH------HHHHHHHHHHHTCCSEEEESCSTTCCCH
T ss_pred ------ccC-cccee-eecc-C--cHHH------HHHHHHHHHhccCCCEEEEcchhhhccc
Confidence 001 12222 2322 1 1222 2344556655566668999999966553
No 42
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.70 E-value=0.0032 Score=62.05 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=36.1
Q ss_pred cccc-ccccccccc-ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 228 PLLT-GQRVLDALF-PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 228 pl~T-GiraID~l~-pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+.| |+.++|-+. .+-+|+-++|.|++|+|||||+.+|+...
T Consensus 16 ~i~t~g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 16 GLLFSGCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CBCCCSCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcccCCHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3678 999998664 68899999999999999999999988653
No 43
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.69 E-value=0.023 Score=56.70 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+..+.|.|++|+|||+|+..+++..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999988764
No 44
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.62 E-value=0.016 Score=58.22 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=25.0
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
|..++|.|++|+|||+|+..+++....+.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~ 98 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDT 98 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccC
Confidence 46799999999999999999998876554
No 45
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.036 Score=58.33 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=23.7
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
++++||||||||.|+..+|+..+..++
T Consensus 185 vLL~GPPGTGKTllAkAiA~e~~~~f~ 211 (405)
T 4b4t_J 185 VILYGPPGTGKTLLARAVAHHTDCKFI 211 (405)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHTCEEE
T ss_pred eEEeCCCCCCHHHHHHHHHHhhCCCce
Confidence 689999999999999999998876543
No 46
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.45 E-value=0.0082 Score=59.68 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.7
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
+++.||||+|||+|+..||+..+..++
T Consensus 39 lLl~GppGtGKT~la~aiA~~l~~~~i 65 (293)
T 3t15_A 39 LGIWGGKGQGKSFQCELVFRKMGINPI 65 (293)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHTCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 567799999999999999998765543
No 47
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.44 E-value=0.11 Score=50.29 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.2
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.+..++|.|++|+|||+|+..+++..+..+
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~ 79 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATF 79 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 455689999999999999999998876543
No 48
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.43 E-value=0.016 Score=61.22 Aligned_cols=62 Identities=15% Similarity=0.151 Sum_probs=45.8
Q ss_pred ccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhccC--CC-EEEEEeeCCchhHHHH
Q 010179 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYSN--SD-TVVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~~--~d-~~V~~~iGeR~~Ev~e 288 (516)
.-+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+|+.+.. .+ -++|...-+...++.+
T Consensus 184 ~~i~tG~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~ 249 (454)
T 2r6a_A 184 TGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVM 249 (454)
T ss_dssp CSBCCSCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHH
T ss_pred CCCCCCcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHH
Confidence 457899999999873 77999999999999999999998886532 23 2444444444444443
No 49
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.35 E-value=0.0036 Score=61.38 Aligned_cols=45 Identities=22% Similarity=0.300 Sum_probs=37.7
Q ss_pred CCCccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 224 AADTPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 224 ~~~epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
...+.+.||+..+|.++. +-+|+.++|.|++|+|||||+.+++..
T Consensus 8 ~~~~~i~tg~~~ld~~lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 8 NILEAFAAAPPPLDYVLPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp CHHHHHHSCCCCCCEEETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CHHHHhcCCCCChheeECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 345668899999998775 448999999999999999999988753
No 50
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.25 E-value=0.0098 Score=73.47 Aligned_cols=109 Identities=15% Similarity=0.212 Sum_probs=70.3
Q ss_pred CCccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCc-hhHHHHHHHhcccccc
Q 010179 225 ADTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGER-GNEMAEVLMDFPQLTM 298 (516)
Q Consensus 225 ~~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR-~~Ev~e~~~~~~~~~~ 298 (516)
..+.+.||+..+|.++. +-+|.-+.|+||+|+|||+|+.+++..+ ....++|.-.-+. ..+. .+.+ -.
T Consensus 1404 ~~~~isTG~~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~---G~ 1477 (2050)
T 3cmu_A 1404 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKL---GV 1477 (2050)
T ss_dssp SCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHT---TC
T ss_pred ccccccCCCHHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHc---CC
Confidence 35678999999999999 7799999999999999999999887653 2334555544433 3333 2221 11
Q ss_pred CCCCCCccCCcceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHH
Q 010179 299 TLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (516)
Q Consensus 299 ~~~~~~~~~~~~rtvvv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a 358 (516)
++ ++ +.+.+.+ |. + .++.+++.+.++++--+|++||++-|+
T Consensus 1478 dl---------~~--l~v~~~~-~~-E------~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1478 DI---------DN--LLCSQPD-TG-E------QALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp CT---------TT--CEEECCS-SH-H------HHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred Cc---------hh--ceeecCC-hH-H------HHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 11 11 2333433 22 2 455566666665665688999997444
No 51
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=95.21 E-value=0.025 Score=55.98 Aligned_cols=65 Identities=11% Similarity=-0.097 Sum_probs=52.7
Q ss_pred ccccccccccccc--cccCCccccCCCCCCCchHhHHHhhhc--cCCCEEEEEeeCCchhHHHHHHHhc
Q 010179 229 LLTGQRVLDALFP--SVLGGTCAIPGAFGCGKTVISQALSKY--SNSDTVVYVGCGERGNEMAEVLMDF 293 (516)
Q Consensus 229 l~TGiraID~l~p--igkGqr~~I~g~~g~GKT~Ll~~ia~~--~~~d~~V~~~iGeR~~Ev~e~~~~~ 293 (516)
+.|||..+|.++- +-+|--++|.|+||+|||+|+.+++.+ ...+.++|....|...++.+-.+.|
T Consensus 3 i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 3 LSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISYPLQLIIRILSRF 71 (260)
T ss_dssp BCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHT
T ss_pred CccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHHHHc
Confidence 5799999999975 448888999999999999998876544 2456799999999999988766653
No 52
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.16 E-value=0.0059 Score=57.13 Aligned_cols=29 Identities=21% Similarity=0.471 Sum_probs=24.3
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++-+|+.++|+|++|+|||||+.+|+...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 78899999999999999999999998765
No 53
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.15 E-value=0.087 Score=52.18 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=25.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.+..++|.|++|+|||+|+..|++.....
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~ 76 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQAN 76 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCC
Confidence 45668999999999999999999987654
No 54
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.12 E-value=0.0062 Score=57.83 Aligned_cols=30 Identities=20% Similarity=-0.015 Sum_probs=24.4
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+-+|+.++|+|++|+|||||+..|+...
T Consensus 18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 567799999999999999999999998765
No 55
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.11 E-value=0.06 Score=47.51 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+..+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999988763
No 56
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.07 E-value=0.0067 Score=55.74 Aligned_cols=28 Identities=29% Similarity=0.248 Sum_probs=24.6
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+|+.++|.||+|+|||||+.+|+...
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence 4579999999999999999999998764
No 57
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.00 E-value=0.089 Score=55.66 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
+++.||||||||.|+..||+..+..++
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~ 235 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFI 235 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 789999999999999999998876543
No 58
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.00 E-value=0.0085 Score=54.40 Aligned_cols=29 Identities=28% Similarity=0.219 Sum_probs=25.2
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.+|+.++|+|++|+|||||+..|++..
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999988764
No 59
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.99 E-value=0.013 Score=56.76 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.-...+-
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 59 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTE 59 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCc
Confidence 346889999999999999999999999998765554
No 60
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.88 E-value=0.0079 Score=55.84 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=24.3
Q ss_pred ccccccccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 229 LLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 229 l~TGiraID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.++--..+.+++..+|..++|.|++|+|||||+..|+...
T Consensus 13 ~~~~~~~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 13 LGTENLYFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp ---------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCchhhHHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 34444556667777889999999999999999999998765
No 61
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.77 E-value=0.014 Score=56.03 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=30.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+-+|+.++|.|++|+|||||+..|+.-...+-
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~ 58 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTE 58 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 346788999999999999999999999998765543
No 62
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.06 Score=57.08 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=24.2
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVV 275 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V 275 (516)
++++||||||||.|+..+|+..+..++.
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 6899999999999999999988765433
No 63
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.075 Score=56.40 Aligned_cols=27 Identities=26% Similarity=0.460 Sum_probs=23.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
++++||||||||.|+..||+..+..++
T Consensus 219 vLLyGPPGTGKTlLAkAiA~e~~~~fi 245 (437)
T 4b4t_I 219 VILYGAPGTGKTLLAKAVANQTSATFL 245 (437)
T ss_dssp EEEESSTTTTHHHHHHHHHHHHTCEEE
T ss_pred CceECCCCchHHHHHHHHHHHhCCCEE
Confidence 789999999999999999998876543
No 64
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.69 E-value=0.048 Score=54.31 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..++.++|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999998764
No 65
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.68 E-value=0.016 Score=56.44 Aligned_cols=36 Identities=17% Similarity=0.338 Sum_probs=30.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+-+|+.++|.|++|+|||||+..|+.....+-
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~ 63 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPEN 63 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346788999999999999999999999998765543
No 66
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.68 E-value=0.07 Score=54.01 Aligned_cols=93 Identities=12% Similarity=0.079 Sum_probs=50.5
Q ss_pred cCCcccc--CCCCCCCchHhHHHhhhccCC-------CE-EEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEE
Q 010179 244 LGGTCAI--PGAFGCGKTVISQALSKYSNS-------DT-VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTT 313 (516)
Q Consensus 244 kGqr~~I--~g~~g~GKT~Ll~~ia~~~~~-------d~-~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtv 313 (516)
.++.+.| .|++|+|||+|+..+++.... +. ++++-|.+. ....+++..+-+. + +...
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---l----~~~~----- 115 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNA-PNLYTILSLIVRQ---T----GYPI----- 115 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGC-CSHHHHHHHHHHH---H----TCCC-----
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCC-CCHHHHHHHHHHH---h----CCCC-----
Confidence 4556777 999999999999998875421 34 566655432 2233343321000 0 0000
Q ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHH
Q 010179 314 LVANTSNMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWA 358 (516)
Q Consensus 314 vv~~tsd~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a 358 (516)
.....+... ..-.+.+++...++.++|++|++..+.
T Consensus 116 ---~~~~~~~~~------~~~~l~~~l~~~~~~~llvlDe~~~l~ 151 (412)
T 1w5s_A 116 ---QVRGAPALD------ILKALVDNLYVENHYLLVILDEFQSML 151 (412)
T ss_dssp ---CCTTCCHHH------HHHHHHHHHHHHTCEEEEEEESTHHHH
T ss_pred ---CCCCCCHHH------HHHHHHHHHHhcCCeEEEEEeCHHHHh
Confidence 001112211 112334455556889999999998664
No 67
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.68 E-value=0.082 Score=51.11 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=25.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
....++|.|++|+|||+|+..+++..+..++
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3456899999999999999999987655433
No 68
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.66 E-value=0.13 Score=51.51 Aligned_cols=35 Identities=26% Similarity=0.285 Sum_probs=26.9
Q ss_pred ccccCCCCCCCchHhHHHhhhccCC--C-EEEEEeeCC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNS--D-TVVYVGCGE 281 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~--d-~~V~~~iGe 281 (516)
.++|.|++|+|||+|+..+++.... + .++++-|..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 6999999999999999999877543 2 355555544
No 69
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.64 E-value=0.086 Score=55.96 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.9
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
++++||||||||.|+..||+..+..++
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~~~~~~ 244 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATIGANFI 244 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 789999999999999999998877543
No 70
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.61 E-value=0.011 Score=54.34 Aligned_cols=29 Identities=17% Similarity=0.247 Sum_probs=25.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.+|..++|.|++|+|||||+..|+...
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999998865
No 71
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.61 E-value=0.018 Score=56.41 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=30.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.-...+-
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 61 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADE 61 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 346788999999999999999999999998765543
No 72
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.60 E-value=0.01 Score=57.50 Aligned_cols=31 Identities=32% Similarity=0.483 Sum_probs=28.2
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+..|+...
T Consensus 25 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 25 TFSIPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678999999999999999999999998764
No 73
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.59 E-value=0.018 Score=55.06 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=30.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
=+.+-+|+.++|.|++|+|||||+..|+.....+-
T Consensus 29 sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~ 63 (214)
T 1sgw_A 29 TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 63 (214)
T ss_dssp EEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 36788999999999999999999999998765543
No 74
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.58 E-value=0.012 Score=58.16 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=28.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-..
T Consensus 31 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 31 SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EEEEETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46889999999999999999999999987643
No 75
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.56 E-value=0.018 Score=56.55 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=30.8
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|+|++|+|||||+..|+.-...+-
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~ 60 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE 60 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346788999999999999999999999998765543
No 76
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.56 E-value=0.018 Score=57.29 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=31.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.-...+-
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~ 62 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSS 62 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999999998765543
No 77
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.54 E-value=0.013 Score=56.47 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=29.6
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p 60 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3467889999999999999999999999986543
No 78
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.50 E-value=0.01 Score=55.47 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.9
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..+|+.++|.|++|+|||||+..|+...
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999988754
No 79
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.086 Score=56.43 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=23.7
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
+++.||||||||.|+..||+..+..++
T Consensus 246 ILLyGPPGTGKTlLAkAiA~e~~~~fi 272 (467)
T 4b4t_H 246 ILLYGPPGTGKTLCARAVANRTDATFI 272 (467)
T ss_dssp EEECSCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEeeCCCCCcHHHHHHHHHhccCCCeE
Confidence 789999999999999999998876543
No 80
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.47 E-value=0.02 Score=56.55 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=31.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|+|++|+|||||+..|+.-...+-
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~ 78 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDE 78 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCC
Confidence 346788999999999999999999999998765543
No 81
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.44 E-value=0.22 Score=50.04 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.7
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.-++|+|++|+|||+|+..+++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 347899999999999999999887
No 82
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.43 E-value=0.02 Score=56.17 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=30.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-...+-
T Consensus 35 sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~ 69 (256)
T 1vpl_A 35 SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSS 69 (256)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCc
Confidence 46789999999999999999999999998765543
No 83
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.42 E-value=0.014 Score=56.57 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-...+-
T Consensus 26 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~ 60 (240)
T 1ji0_A 26 DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQK 60 (240)
T ss_dssp EEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 46788999999999999999999999998765543
No 84
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.41 E-value=0.014 Score=58.14 Aligned_cols=36 Identities=22% Similarity=0.352 Sum_probs=30.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.....+-
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~ 75 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATS 75 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSE
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCC
Confidence 346788999999999999999999999998765543
No 85
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.41 E-value=0.021 Score=56.48 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=30.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.....+-
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~ 73 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSE
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 346789999999999999999999999998765543
No 86
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.40 E-value=0.011 Score=53.97 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=27.1
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+|+.++|.|+.|+|||||+..|+...
T Consensus 28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 467899999999999999999999998754
No 87
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.40 E-value=0.034 Score=67.90 Aligned_cols=61 Identities=18% Similarity=0.245 Sum_probs=47.3
Q ss_pred Cccccccccccccccc---cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHH
Q 010179 226 DTPLLTGQRVLDALFP---SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEM 286 (516)
Q Consensus 226 ~epl~TGiraID~l~p---igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev 286 (516)
.+.+.||+..+|.++. +-+|.-+.|.|+||+|||+|+.+++.+. ....++|.-.-+....+
T Consensus 361 ~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~s~~~~ 426 (1706)
T 3cmw_A 361 VETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPI 426 (1706)
T ss_dssp CCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHH
T ss_pred CceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccCchHHH
Confidence 3568999999999987 7799999999999999999999887653 23346666555544443
No 88
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.37 E-value=0.011 Score=59.95 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=29.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.-+.+-+|++++|+|++|+|||||+..|++..
T Consensus 118 ~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 345788999999999999999999999998766
No 89
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.33 E-value=0.013 Score=56.69 Aligned_cols=32 Identities=25% Similarity=0.371 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-..
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999999987643
No 90
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.33 E-value=0.052 Score=48.06 Aligned_cols=27 Identities=26% Similarity=0.235 Sum_probs=22.7
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.....+.|.|++|+|||+|+..+++..
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999988764
No 91
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.28 E-value=0.022 Score=54.58 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
.+.+| ++|.|++|+|||+|+..|++......+
T Consensus 47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~~~~i 78 (254)
T 1ixz_A 47 RIPKG--VLLVGPPGVGKTHLARAVAGEARVPFI 78 (254)
T ss_dssp CCCSE--EEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCCCe--EEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 34456 999999999999999999987765443
No 92
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.28 E-value=0.016 Score=56.82 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=29.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-...
T Consensus 25 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p 57 (253)
T 2nq2_C 25 NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRP 57 (253)
T ss_dssp EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 467889999999999999999999999876543
No 93
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.26 E-value=0.024 Score=55.83 Aligned_cols=34 Identities=18% Similarity=0.230 Sum_probs=29.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
=+.+.+|+.++|.|++|+|||||+..|+.-...+
T Consensus 27 sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~ 60 (266)
T 2yz2_A 27 SLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 60 (266)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 4688999999999999999999999999775544
No 94
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.24 E-value=0.014 Score=60.36 Aligned_cols=35 Identities=31% Similarity=0.471 Sum_probs=30.2
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|+||+|+|||||+.+|+.-...
T Consensus 22 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p 56 (359)
T 3fvq_A 22 DISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQP 56 (359)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCC
T ss_pred eeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCC
Confidence 44578999999999999999999999999876443
No 95
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.20 E-value=0.014 Score=57.06 Aligned_cols=34 Identities=15% Similarity=0.180 Sum_probs=29.7
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|+.++|.|++|+|||||+..|+.....
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p 52 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG 52 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 3467899999999999999999999999876544
No 96
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.18 E-value=0.014 Score=57.31 Aligned_cols=32 Identities=34% Similarity=0.569 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+-+|+.++|.|++|+|||||+..|+....
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 46788999999999999999999999987643
No 97
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.16 E-value=0.014 Score=56.83 Aligned_cols=31 Identities=23% Similarity=0.292 Sum_probs=28.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.=+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468899999999999999999999999985
No 98
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.16 E-value=0.015 Score=57.44 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=27.6
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+-+|+.++|.|++|+|||||+..|+.-
T Consensus 40 sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 40 SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999999885
No 99
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.11 E-value=0.014 Score=54.40 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=21.4
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+|+.++|.||+|+|||||+..|++.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 6889999999999999999998864
No 100
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.07 E-value=0.013 Score=53.21 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=23.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhh
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
+.+.+|+.++|.|++|+|||||+.++.
T Consensus 4 l~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 4 LTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 567899999999999999999999543
No 101
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.06 E-value=0.013 Score=55.54 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=20.2
Q ss_pred ccccCCccccCCCCCCCchHhHHHhh-hcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALS-KYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia-~~~ 269 (516)
.+.+|+.++|.||+|+|||||+.+|+ ...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56789999999999999999999998 653
No 102
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=94.04 E-value=0.01 Score=54.43 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.4
Q ss_pred cccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 234 raID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+++- +++.+|.+++|+|++|+|||||+..++...
T Consensus 16 ~~l~~-~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 16 PDIRH-LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSGGG-SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCHhH-CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34555 789999999999999999999999887643
No 103
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=94.01 E-value=0.019 Score=59.38 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=30.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-...
T Consensus 33 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 67 (355)
T 1z47_A 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERP 67 (355)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred eeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCC
Confidence 44578899999999999999999999999876543
No 104
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=94.00 E-value=0.02 Score=56.40 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=25.2
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.+.+| +++.|++|+|||+|+..|++.....
T Consensus 42 ~~~~G--vlL~Gp~GtGKTtLakala~~~~~~ 71 (274)
T 2x8a_A 42 VTPAG--VLLAGPPGCGKTLLAKAVANESGLN 71 (274)
T ss_dssp CCCSE--EEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CCCCe--EEEECCCCCcHHHHHHHHHHHcCCC
Confidence 34466 9999999999999999999876654
No 105
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.98 E-value=0.016 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.3
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|..++|.||+|+|||||+..|++..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 57889999999999999999998754
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.98 E-value=0.015 Score=52.23 Aligned_cols=26 Identities=27% Similarity=0.239 Sum_probs=24.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|+.++|+|++|+|||+|+..|++..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999998754
No 107
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.96 E-value=0.028 Score=58.63 Aligned_cols=36 Identities=19% Similarity=0.327 Sum_probs=30.7
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~ 56 (381)
T 3rlf_A 21 DINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT 56 (381)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC
Confidence 344788999999999999999999999999765444
No 108
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.96 E-value=0.02 Score=59.24 Aligned_cols=35 Identities=29% Similarity=0.349 Sum_probs=30.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 55 (359)
T 2yyz_A 21 GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKP 55 (359)
T ss_dssp EEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCC
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCC
Confidence 44568899999999999999999999999876443
No 109
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.95 E-value=0.02 Score=59.30 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=30.7
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (362)
T 2it1_A 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT 56 (362)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC
Confidence 345688999999999999999999999999765443
No 110
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.88 E-value=0.021 Score=59.36 Aligned_cols=35 Identities=20% Similarity=0.292 Sum_probs=30.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-...
T Consensus 29 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 63 (372)
T 1v43_A 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEP 63 (372)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCC
T ss_pred eeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence 44568899999999999999999999999876443
No 111
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.87 E-value=0.14 Score=45.07 Aligned_cols=26 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.-+.|.|++|+|||+++..|++..
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 44568999999999999999998875
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.86 E-value=0.021 Score=52.90 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=24.4
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.+.+|..+.|.|++|+||||++..|++...
T Consensus 20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3456788999999999999999999997653
No 113
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=93.86 E-value=0.016 Score=55.64 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=24.3
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|..++|.|++|+|||||+..|+..
T Consensus 20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 20 FQSMRPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp ---CCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 57789999999999999999999998874
No 114
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.84 E-value=0.03 Score=58.12 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-...+
T Consensus 21 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 56 (372)
T 1g29_1 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS 56 (372)
T ss_dssp EEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS
T ss_pred eeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC
Confidence 445788999999999999999999999999765544
No 115
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.65 E-value=0.023 Score=57.39 Aligned_cols=36 Identities=28% Similarity=0.442 Sum_probs=31.0
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+-+|++++|+|++|+|||||+..|++....+-
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~ 108 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISS 108 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSE
T ss_pred eeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 346899999999999999999999999998765543
No 116
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.61 E-value=0.016 Score=53.66 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=23.7
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..+|..++|.|++|+|||||+..|+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999998753
No 117
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=93.53 E-value=0.031 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=22.8
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.-+.|.|++|+|||+|+..|++..
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45678999999999999999998764
No 118
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.52 E-value=0.017 Score=59.39 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=29.9
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
|.=+.+.+|+.++|+|++|+|||||+.+|+.-...
T Consensus 18 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p 52 (348)
T 3d31_A 18 NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVP 52 (348)
T ss_dssp EEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCC
T ss_pred eeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCC
Confidence 34468899999999999999999999999876543
No 119
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=93.48 E-value=0.032 Score=55.33 Aligned_cols=69 Identities=17% Similarity=0.218 Sum_probs=40.4
Q ss_pred ccccCCC-CCCCchHhHHHhhhccCCCEEEEEeeCCchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCCCCH
Q 010179 247 TCAIPGA-FGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPV 323 (516)
Q Consensus 247 r~~I~g~-~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd~~~ 323 (516)
...+++| +|+|||+++..+++....+++-+-+-..+..++.+.+.++-+. .+. .-++.+++.--.+.-.
T Consensus 49 ~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~~~~i~~~~~~~~~~-~~~-------~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCKIDFVRGPLTNFASA-ASF-------DGRQKVIVIDEFDRSG 118 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCCHHHHHTHHHHHHHB-CCC-------SSCEEEEEEESCCCGG
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccCHHHHHHHHHHHHhh-ccc-------CCCCeEEEEECCcccC
Confidence 4545555 9999999999999987665544444334455555544432110 000 1156777777666543
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.45 E-value=0.021 Score=54.24 Aligned_cols=27 Identities=22% Similarity=0.089 Sum_probs=24.6
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+|+.++|.|++|+|||||+..|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999999988764
No 121
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.42 E-value=0.021 Score=59.74 Aligned_cols=31 Identities=23% Similarity=0.348 Sum_probs=27.9
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+.+.+|+.++|.|++|+|||||+.+|+.-.
T Consensus 41 sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 41 SFSISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred eEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4689999999999999999999999998643
No 122
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=93.33 E-value=0.026 Score=52.91 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=21.9
Q ss_pred CCccccCCCCCCCchHhHHHhhhc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.|++|+|||||+..|+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhh
Confidence 788999999999999999988864
No 123
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.29 E-value=0.043 Score=56.94 Aligned_cols=40 Identities=18% Similarity=0.312 Sum_probs=32.7
Q ss_pred ccc-ccccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 234 RVL-DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 234 raI-D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.++ |.=+.+.+|+.++|+|++|+|||||+..|+.-...+-
T Consensus 42 ~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~ 82 (366)
T 3tui_C 42 QALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE 82 (366)
T ss_dssp EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred EEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCc
Confidence 344 3457899999999999999999999999998655543
No 124
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.27 E-value=0.36 Score=49.39 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=24.4
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
+..++|.|++|+|||+|+..|++..+..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4679999999999999999999886554
No 125
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=93.22 E-value=0.018 Score=59.44 Aligned_cols=36 Identities=19% Similarity=0.238 Sum_probs=30.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|.=+.+.+|+.++|+|++|+|||||+..|+.-...+
T Consensus 23 ~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~ 58 (353)
T 1oxx_K 23 NVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS 58 (353)
T ss_dssp EEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS
T ss_pred ceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC
Confidence 344678999999999999999999999999765443
No 126
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.21 E-value=0.023 Score=56.86 Aligned_cols=32 Identities=25% Similarity=0.266 Sum_probs=28.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
=+.+.+|+.++|.|++|+|||||+..|+....
T Consensus 58 sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 58 NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp EEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46788999999999999999999999987643
No 127
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.18 E-value=0.04 Score=58.35 Aligned_cols=62 Identities=19% Similarity=0.086 Sum_probs=46.5
Q ss_pred ccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhcc-CCCE-EEEEeeCCchhHHHH
Q 010179 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS-NSDT-VVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~-~~d~-~V~~~iGeR~~Ev~e 288 (516)
.-+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.++|.+. ..+. ++|.-.-+...++..
T Consensus 178 ~gi~TG~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms~~ql~~ 242 (444)
T 3bgw_A 178 TGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMGKKENIK 242 (444)
T ss_dssp CSBCCSCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSCTTHHHH
T ss_pred CCcCCCcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCCHHHHHH
Confidence 457899999999885 6799999999999999999999888653 1233 445444445555544
No 128
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.17 E-value=0.03 Score=55.19 Aligned_cols=33 Identities=27% Similarity=0.309 Sum_probs=28.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
=+.+. |+.++|.|++|+|||||+..|+... ++-
T Consensus 25 sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~ 57 (263)
T 2pjz_A 25 NLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYS 57 (263)
T ss_dssp EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCE
T ss_pred eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCC
Confidence 35677 9999999999999999999999876 543
No 129
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=93.11 E-value=0.024 Score=55.76 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.5
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++-+. +-+|+.++|.|++|+|||||+..|++..
T Consensus 16 vl~~i~-i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 16 KVLELC-HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp HHHHGG-GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred HHHHHh-hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 444444 8899999999999999999999888753
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.11 E-value=0.039 Score=53.77 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=25.5
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.+.+| ++|.|++|+|||+|+..|++......
T Consensus 71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~~~~ 101 (278)
T 1iy2_A 71 RIPKG--VLLVGPPGVGKTHLARAVAGEARVPF 101 (278)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCCCe--EEEECCCcChHHHHHHHHHHHcCCCE
Confidence 34456 99999999999999999998776543
No 131
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.11 E-value=0.03 Score=49.97 Aligned_cols=27 Identities=26% Similarity=0.401 Sum_probs=23.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.|..++|.|++|+|||||+..|+....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 366799999999999999999998654
No 132
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.07 E-value=0.03 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=21.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.-++|.||+|+|||||+.+|+...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4567899999999999999988653
No 133
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.92 E-value=0.032 Score=51.06 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+..+|..++|.|++|+||||++..+++.
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 4557888999999999999999999986
No 134
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.90 E-value=0.026 Score=60.74 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=33.7
Q ss_pred ccccccccccccc-c-ccccCCccccCCCCCCCchHhHHHh
Q 010179 227 TPLLTGQRVLDAL-F-PSVLGGTCAIPGAFGCGKTVISQAL 265 (516)
Q Consensus 227 epl~TGiraID~l-~-pigkGqr~~I~g~~g~GKT~Ll~~i 265 (516)
+-+.||+.++|-+ + .+-+|+..+|.|++|+|||||+.++
T Consensus 19 ~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 19 AKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp CEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred ccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3467899999865 4 6889999999999999999999984
No 135
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=92.85 E-value=0.014 Score=59.11 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=29.8
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+|.|+++-+|+.++|+|++|+|||||+..|+....
T Consensus 164 ~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 198 (307)
T 1t9h_A 164 LADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELG 198 (307)
T ss_dssp CTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHHHHhccccc
Confidence 67788999999999999999999999999986543
No 136
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.82 E-value=0.033 Score=53.33 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=24.1
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+-+|+.++|.||+|+|||||+..|+....
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34788999999999999999999887654
No 137
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.81 E-value=0.036 Score=56.87 Aligned_cols=62 Identities=24% Similarity=0.109 Sum_probs=44.9
Q ss_pred ccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhccC-CCEEEEEeeCC-chhHHHH
Q 010179 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYSN-SDTVVYVGCGE-RGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~~-~d~~V~~~iGe-R~~Ev~e 288 (516)
.-+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.++|.+.. .+..|..+..| ...++..
T Consensus 27 ~gi~TG~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~ 91 (338)
T 4a1f_A 27 TGIPTGFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLAL 91 (338)
T ss_dssp CSBCCSCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHH
T ss_pred CcccCCChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHH
Confidence 457899999999874 88999999999999999999998886531 23333333334 4444433
No 138
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.81 E-value=0.03 Score=58.89 Aligned_cols=62 Identities=18% Similarity=0.157 Sum_probs=44.2
Q ss_pred ccccccccccccccc-cccCCccccCCCCCCCchHhHHHhhhcc--CCCE-EEEEeeCCchhHHHH
Q 010179 227 TPLLTGQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDT-VVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~-~V~~~iGeR~~Ev~e 288 (516)
.-+.||+..+|-++- +-+|+-+.|.|+||+|||+|+.+++.+. ..+. ++|.-.-+...++.+
T Consensus 181 ~~i~tG~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~ 246 (444)
T 2q6t_A 181 AGVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTL 246 (444)
T ss_dssp --CCCSCHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHH
T ss_pred CcccCCCHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHH
Confidence 457899999999883 6699999999999999999999888653 2233 444444444444443
No 139
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.79 E-value=0.029 Score=52.00 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=26.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
...+.+|..++|.|++|+|||||+..|++..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3456678889999999999999999999854
No 140
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.73 E-value=0.033 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.309 Sum_probs=21.8
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.++|.|++|+|||||+..|+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc
Confidence 5668999999999999999998743
No 141
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.66 E-value=0.037 Score=52.57 Aligned_cols=29 Identities=28% Similarity=0.202 Sum_probs=24.6
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.-+|..+.|.||+|+|||||+..|++..
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 45578889999999999999999988654
No 142
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.64 E-value=0.055 Score=58.14 Aligned_cols=62 Identities=18% Similarity=0.258 Sum_probs=44.1
Q ss_pred cccccccccccccc--ccccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHH
Q 010179 227 TPLLTGQRVLDALF--PSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~TGiraID~l~--pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e 288 (516)
+-+.||+.-+|.++ .+-+|..++|.|++|+|||||+.+++... ....++|..-.+....+.+
T Consensus 261 ~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~ 326 (525)
T 1tf7_A 261 VRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLR 326 (525)
T ss_dssp CEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHH
T ss_pred ceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHH
Confidence 45678988888664 78899999999999999999999987542 2223444444444444443
No 143
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.55 E-value=0.03 Score=55.90 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=32.9
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
-||-++.+-+|+.++|.|++|+|||||+..|+.....+
T Consensus 159 gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~ 196 (301)
T 1u0l_A 159 GIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR 196 (301)
T ss_dssp THHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC
T ss_pred CHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccc
Confidence 36778888999999999999999999999998765443
No 144
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.52 E-value=0.035 Score=49.84 Aligned_cols=26 Identities=15% Similarity=0.241 Sum_probs=23.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|..++|.|++|+||||++..|+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 57789999999999999999998754
No 145
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.49 E-value=0.068 Score=51.85 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=29.4
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+.+ +.++|.|++|+|||||+..|+.-...+-
T Consensus 18 isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~ 52 (240)
T 2onk_A 18 VDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDR 52 (240)
T ss_dssp EEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSE
T ss_pred eEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCc
Confidence 3457788 9999999999999999999998765543
No 146
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.47 E-value=0.035 Score=51.46 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=28.3
Q ss_pred cccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 234 RVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 234 raID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+..+.--.+++.+.|.|++|+|||+|+..+++..
T Consensus 41 ~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 41 GALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344444444578999999999999999999998764
No 147
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.47 E-value=0.04 Score=51.58 Aligned_cols=29 Identities=24% Similarity=0.319 Sum_probs=25.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.+|.-++|.||+|+|||||+.+|+.....
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 36888999999999999999999876543
No 148
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.45 E-value=0.037 Score=51.17 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.0
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++|.|++|+|||||+..|+....
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678999999999999999987643
No 149
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.44 E-value=0.04 Score=58.69 Aligned_cols=62 Identities=16% Similarity=0.031 Sum_probs=46.6
Q ss_pred ccccc-cccccccccc-cccCCccccCCCCCCCchHhHHHhhhccC-C-C-EEEEEeeCCchhHHHH
Q 010179 227 TPLLT-GQRVLDALFP-SVLGGTCAIPGAFGCGKTVISQALSKYSN-S-D-TVVYVGCGERGNEMAE 288 (516)
Q Consensus 227 epl~T-GiraID~l~p-igkGqr~~I~g~~g~GKT~Ll~~ia~~~~-~-d-~~V~~~iGeR~~Ev~e 288 (516)
..+.| |++.+|-++- +-+|.-+.|.|+||+|||+|+.+++.+.. . + -++|.-.-+...++.+
T Consensus 222 ~~i~t~G~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s~~~l~~ 288 (503)
T 1q57_A 222 VGLLFSGCTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEESVEETAE 288 (503)
T ss_dssp TCSCCSSCTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSCHHHHHH
T ss_pred CCccccchhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCCHHHHHH
Confidence 35778 9999999874 56899999999999999999999886642 2 3 3555555555555554
No 150
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.43 E-value=0.068 Score=56.27 Aligned_cols=25 Identities=32% Similarity=0.421 Sum_probs=22.1
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.-+.|.|++|+|||+|+..|++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998764
No 151
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.39 E-value=0.035 Score=55.50 Aligned_cols=36 Identities=28% Similarity=0.393 Sum_probs=31.7
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
-+|.|+.+-+|+..++.|++|+|||||+..|+ ....
T Consensus 155 gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~ 190 (302)
T 2yv5_A 155 GIDELVDYLEGFICILAGPSGVGKSSILSRLT-GEEL 190 (302)
T ss_dssp THHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCC
T ss_pred CHHHHHhhccCcEEEEECCCCCCHHHHHHHHH-HhhC
Confidence 47888899999999999999999999999998 6443
No 152
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.34 E-value=0.037 Score=55.84 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=25.3
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+.+|..++|.|++|+|||||+..|+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 3789999999999999999999988864
No 153
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.32 E-value=0.054 Score=54.16 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=19.7
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++|.|++|+|||+++..+++..
T Consensus 41 ~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 41 YLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999999988753
No 154
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=92.25 E-value=0.29 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.5
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
...++|.|++|+|||+|+..|++..+.
T Consensus 238 ~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred CCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 345999999999999999999988754
No 155
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.15 E-value=0.059 Score=54.86 Aligned_cols=30 Identities=27% Similarity=0.253 Sum_probs=26.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+.+.+|+.++|.|++|+|||||+..|+..
T Consensus 49 ~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 49 LPQTGRAIRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp GGGCCCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcccCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 356899999999999999999999998854
No 156
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.14 E-value=0.047 Score=50.70 Aligned_cols=28 Identities=14% Similarity=0.061 Sum_probs=25.0
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+|.-+.|.|++|+|||||+..|++..
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 5678889999999999999999998765
No 157
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.13 E-value=0.04 Score=50.99 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+|..+.|.|++|+|||||+..|++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468889999999999999999998753
No 158
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=92.02 E-value=0.028 Score=56.18 Aligned_cols=28 Identities=18% Similarity=0.275 Sum_probs=24.9
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+..+|..++|.|++|+|||||+..|+..
T Consensus 76 ~~~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 76 GQRIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp -CCCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999998874
No 159
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.042 Score=58.54 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=28.3
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|.=+.+-+|++++|.|++|+|||||+..|++..
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 344567799999999999999999999998764
No 160
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=91.78 E-value=0.038 Score=56.45 Aligned_cols=32 Identities=28% Similarity=0.303 Sum_probs=27.5
Q ss_pred cccc--CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 241 PSVL--GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 241 pigk--Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.+.+ |++++|+|++|+|||||+..|++..+.+
T Consensus 164 ~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 164 EARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp TTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred HHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456 9999999999999999999999876554
No 161
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.78 E-value=0.091 Score=52.70 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.7
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..+..+.|.|++|+|||+|+..+++..
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999998753
No 162
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=91.69 E-value=0.07 Score=53.60 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=34.2
Q ss_pred CccccCCCCCCCchHhHHHhhhc------cCCCEEEEEeeC-Cch-hHHHHHHHhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY------SNSDTVVYVGCG-ERG-NEMAEVLMDF 293 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~------~~~d~~V~~~iG-eR~-~Ev~e~~~~~ 293 (516)
.-.++.|++|+|||+++..+++. .+.|+..+-.-| +++ .+++++++.+
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~ 74 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFL 74 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHH
Confidence 35789999999999999999875 256876665544 333 3566666653
No 163
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=91.68 E-value=0.067 Score=57.99 Aligned_cols=35 Identities=29% Similarity=0.221 Sum_probs=29.1
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++.+..+.+|++++|.|++|+|||||+..|+...
T Consensus 37 ~l~~vs~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 37 VLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cccCcCcCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34444468999999999999999999999998653
No 164
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.68 E-value=1 Score=48.66 Aligned_cols=47 Identities=15% Similarity=0.110 Sum_probs=32.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhh----c-cCCCEEEEEeeCCchhHH
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSK----Y-SNSDTVVYVGCGERGNEM 286 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~----~-~~~d~~V~~~iGeR~~Ev 286 (516)
.+.+.+|..++|.|.+|+|||+++..|+. . ...++ -+.++.-++.|.
T Consensus 161 ~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v-~l~liDpK~~el 212 (512)
T 2ius_A 161 VADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDV-RFIMIDPKMLEL 212 (512)
T ss_dssp EEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTE-EEEEECCSSSGG
T ss_pred EEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceE-EEEEECCchhhh
Confidence 45677899999999999999999886542 2 33344 444555554443
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=91.67 E-value=0.24 Score=53.26 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=28.6
Q ss_pred CccccCCCCCCCchHhHHHhhh----cc--CCCEEEEEeeCCc
Q 010179 246 GTCAIPGAFGCGKTVISQALSK----YS--NSDTVVYVGCGER 282 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~----~~--~~d~~V~~~iGeR 282 (516)
..++|.|..|+|||||+..+++ .. +-|.++++-+.+.
T Consensus 153 ~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~ 195 (549)
T 2a5y_B 153 FFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT 195 (549)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCC
Confidence 4588999999999999999996 22 2356777776664
No 166
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.67 E-value=0.067 Score=59.02 Aligned_cols=35 Identities=23% Similarity=0.239 Sum_probs=29.6
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++.+..+.+|+.++|.|++|+|||||+..|+...
T Consensus 93 ~l~~l~~~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 93 KLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred eecCCCCCCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 35555567899999999999999999999998653
No 167
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.61 E-value=0.4 Score=54.60 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.6
Q ss_pred cccCCCCCCCchHhHHHhhhccCCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
+++.||||+|||+|+..+|+..+..
T Consensus 241 ILL~GPPGTGKT~LAraiA~elg~~ 265 (806)
T 3cf2_A 241 ILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp EEEECCTTSCHHHHHHHHHTTTTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999987654
No 168
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.61 E-value=0.056 Score=50.38 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.2
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+..++|.|++|+||||++..|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5679999999999999999998754
No 169
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=91.60 E-value=0.35 Score=49.04 Aligned_cols=28 Identities=14% Similarity=-0.070 Sum_probs=24.2
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++..+.|.|+||||||+++..+++..
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688889999999999999999887653
No 170
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.55 E-value=0.056 Score=51.68 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++..++|.|++|+|||||+..|++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~ 50 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQN 50 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999999954
No 171
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=91.49 E-value=0.6 Score=47.18 Aligned_cols=43 Identities=19% Similarity=0.175 Sum_probs=30.9
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGER 282 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR 282 (516)
+...+|+.+++.|++|+||||++..||... ...-+.++.+.-+
T Consensus 100 ~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 100 FKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 356789999999999999999999887642 2223444455543
No 172
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.44 E-value=0.29 Score=52.49 Aligned_cols=39 Identities=28% Similarity=0.469 Sum_probs=27.4
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc------CCCEEEEEeeCCc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS------NSDTVVYVGCGER 282 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~------~~d~~V~~~iGeR 282 (516)
....++|.|++|+|||+|+.++++.. -.+.+.++-++..
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~ 190 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ 190 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC
Confidence 45568999999999999999987642 1234555545544
No 173
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=91.44 E-value=0.17 Score=51.45 Aligned_cols=28 Identities=25% Similarity=0.348 Sum_probs=23.9
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
..++|.|++|+|||+|+..+++..+..+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~ 112 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTF 112 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3488999999999999999999876544
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.41 E-value=0.086 Score=53.07 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=33.1
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCEEEE-EeeCCchhHHHHHHH
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVY-VGCGERGNEMAEVLM 291 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~-~~iGeR~~Ev~e~~~ 291 (516)
..++|.||+|+|||||+..|++.....+... +-+-+++.++.+++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 6789999999999999999998765554322 223455666666554
No 175
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.39 E-value=0.082 Score=50.21 Aligned_cols=33 Identities=30% Similarity=0.392 Sum_probs=27.2
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCCCEE
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTV 274 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~ 274 (516)
+.-+|..++|.|+.|+|||||+..|+.. ...+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 4567889999999999999999999987 33443
No 176
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=91.28 E-value=0.052 Score=48.97 Aligned_cols=26 Identities=23% Similarity=0.327 Sum_probs=23.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|..+++.|++|+||||++..+++..
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998754
No 177
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.17 E-value=0.077 Score=57.93 Aligned_cols=36 Identities=19% Similarity=0.287 Sum_probs=30.9
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.=+.+-+|+.++|.|++|+|||||+..|++..+.+-
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~ 398 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSE
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCC
Confidence 446788999999999999999999999998765543
No 178
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.11 E-value=0.061 Score=55.18 Aligned_cols=34 Identities=26% Similarity=0.260 Sum_probs=29.3
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
=+.+-+|+.++|.|++|+|||||+..|++..+.+
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 3567899999999999999999999999876543
No 179
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.10 E-value=0.078 Score=57.76 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=29.5
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.=+.+.+|+.++|.|++|+|||||+..|++..+.
T Consensus 362 i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p 395 (582)
T 3b5x_A 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDV 395 (582)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3467889999999999999999999999986543
No 180
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.99 E-value=0.08 Score=47.73 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.1
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.++..+.|.|++|+||||++..+++..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999997653
No 181
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.91 E-value=0.11 Score=46.38 Aligned_cols=28 Identities=18% Similarity=0.183 Sum_probs=23.5
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|..+.|.|.+|+||||++..+++.....
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~ 30 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 4567899999999999999999876543
No 182
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.90 E-value=0.25 Score=49.03 Aligned_cols=46 Identities=20% Similarity=0.276 Sum_probs=32.9
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCEE-EEEeeCCchhHHHHHHH
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDTV-VYVGCGERGNEMAEVLM 291 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~~-V~~~iGeR~~Ev~e~~~ 291 (516)
..++|.|++|+|||+|+..+++..+..++ +-+..-+...+..+++.
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILT 102 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHHH
Confidence 35899999999999999999988766543 33333445556666654
No 183
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.88 E-value=0.087 Score=57.65 Aligned_cols=34 Identities=32% Similarity=0.476 Sum_probs=30.1
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
=+.+-+|++++|.|++|+|||||+..|++-.+.+
T Consensus 375 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~ 408 (598)
T 3qf4_B 375 TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD 408 (598)
T ss_dssp EEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC
Confidence 4678999999999999999999999999876554
No 184
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=90.82 E-value=0.089 Score=57.97 Aligned_cols=35 Identities=31% Similarity=0.211 Sum_probs=29.6
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++.+..+.+|+.++|.|++|+|||||+..|+...
T Consensus 107 ~l~~vs~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 107 VLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp EEECCCCCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eeCCCCCCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 45555467999999999999999999999998653
No 185
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=90.81 E-value=0.075 Score=57.87 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=30.4
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.=+.+-+|+.++|.|++|+|||||+..|++..+.+
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~ 396 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDID 396 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC
Confidence 34678899999999999999999999999876544
No 186
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.81 E-value=0.07 Score=53.61 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=26.1
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 95 ~~~~~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 95 LGFRKPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CCSSSCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999875
No 187
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.77 E-value=0.068 Score=58.20 Aligned_cols=35 Identities=20% Similarity=0.333 Sum_probs=30.5
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
=+.+.+|++++|.|++|+|||||+..|++..+.+-
T Consensus 361 sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~ 395 (578)
T 4a82_A 361 NLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTS 395 (578)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSE
T ss_pred EEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCC
Confidence 46889999999999999999999999998765543
No 188
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=90.68 E-value=0.076 Score=51.36 Aligned_cols=27 Identities=22% Similarity=0.405 Sum_probs=23.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+|..++|.|++|+|||||+..|++..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999999543
No 189
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.63 E-value=0.08 Score=53.26 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=23.8
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++|+.++|+|++|+|||||+..|+..
T Consensus 100 ~~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 100 PKGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 47999999999999999999999865
No 190
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.61 E-value=0.16 Score=51.02 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.1
Q ss_pred cccCCCCCCCchHhHHHhhhc
Q 010179 248 CAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.++.|++|+|||+++..+++.
T Consensus 27 ~L~~G~~G~GKt~~a~~la~~ 47 (334)
T 1a5t_A 27 LLIQALPGMGDDALIYALSRY 47 (334)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHHH
Confidence 788999999999999998875
No 191
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=90.52 E-value=0.11 Score=50.51 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=24.1
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
+..++|.|++|+|||+|+..+++.....
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 5668999999999999999999877543
No 192
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=90.39 E-value=0.067 Score=47.97 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.6
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|.+++|+|.+|+|||+|+..+++..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57789999999999999999998753
No 193
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=90.38 E-value=0.11 Score=49.80 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.3
Q ss_pred cccCCCCCCCchHhHHHhhhccCCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
++|.|++|+|||+|+..|++..+..
T Consensus 48 vll~G~~GtGKT~la~~la~~~~~~ 72 (257)
T 1lv7_A 48 VLMVGPPGTGKTLLAKAIAGEAKVP 72 (257)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred EEEECcCCCCHHHHHHHHHHHcCCC
Confidence 8899999999999999999876544
No 194
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.28 E-value=0.089 Score=47.27 Aligned_cols=25 Identities=24% Similarity=0.237 Sum_probs=22.0
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|..+.|.|++|+||||++..|++..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998753
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=90.28 E-value=0.074 Score=49.37 Aligned_cols=28 Identities=25% Similarity=0.213 Sum_probs=24.3
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+..+|..++|.|++|+|||||+..|+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3567888999999999999999998864
No 196
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.26 E-value=0.1 Score=56.64 Aligned_cols=28 Identities=29% Similarity=0.327 Sum_probs=25.6
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+|+.++|.|+.|+|||||+..|+...
T Consensus 309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5799999999999999999999998754
No 197
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.24 E-value=0.072 Score=55.10 Aligned_cols=35 Identities=29% Similarity=0.389 Sum_probs=28.8
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+|.+....+|+.++|+|++|+|||||+..|+....
T Consensus 206 l~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 206 LKPLEEALTGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp HHHHHHHHTTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCccHHHHHHHHhcccc
Confidence 34445566899999999999999999999987544
No 198
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.23 E-value=0.098 Score=56.77 Aligned_cols=29 Identities=28% Similarity=0.280 Sum_probs=26.4
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.+|+.++|.|++|+|||||+..|+...
T Consensus 290 ~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 290 EAKEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred eECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999999998753
No 199
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=90.19 E-value=0.082 Score=46.66 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.|.|++|+||||++..|++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999998764
No 200
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=90.17 E-value=0.13 Score=48.80 Aligned_cols=27 Identities=26% Similarity=0.508 Sum_probs=23.0
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
..++|.|++|+|||+|+..+++..+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~~~~ 66 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEAQVP 66 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 347899999999999999999876554
No 201
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.11 E-value=0.11 Score=48.23 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++|.|++|+||||++..|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987653
No 202
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=90.10 E-value=0.1 Score=52.95 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=28.6
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
+.+.+|+.++|.|++|+|||||+..|++....+
T Consensus 166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~ 198 (330)
T 2pt7_A 166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE 198 (330)
T ss_dssp HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT
T ss_pred hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 456789999999999999999999999876543
No 203
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=90.02 E-value=0.088 Score=48.39 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.1
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+|-.+.|.|++|+||||++..+++.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46778999999999999999999875
No 204
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.00 E-value=0.17 Score=55.26 Aligned_cols=35 Identities=20% Similarity=0.390 Sum_probs=30.7
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
=+.+-+|++++|.|++|+|||||+..|++..+.+-
T Consensus 363 sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~ 397 (587)
T 3qf4_A 363 NFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPER 397 (587)
T ss_dssp EEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSE
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCC
Confidence 46889999999999999999999999998765543
No 205
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.97 E-value=0.11 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.4
Q ss_pred CccccCCCCCCCchHhHHHhhhccC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
|-++|.|++|+||||+...+++...
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6789999999999999999998654
No 206
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=89.97 E-value=0.1 Score=50.36 Aligned_cols=31 Identities=26% Similarity=0.186 Sum_probs=26.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+..++..+.+.|++|+||||++..|++....
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4556778999999999999999999986543
No 207
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.89 E-value=0.086 Score=48.45 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=23.2
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.-+|-.+.|.|++|+||||++..+++.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 446778999999999999999999875
No 208
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=89.79 E-value=0.079 Score=51.86 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=26.0
Q ss_pred ccccc---CCccccCCCCCCCchHhHHHhhhcc
Q 010179 240 FPSVL---GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 240 ~pigk---Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+.+ |..+.|.|++|+||||++..|++..
T Consensus 40 ~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 40 EEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 45555 9999999999999999999999754
No 209
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=89.76 E-value=0.11 Score=48.17 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=20.8
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++|.|++|+||||++..+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987643
No 210
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=89.75 E-value=0.12 Score=46.58 Aligned_cols=26 Identities=27% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCccccCCCCCCCchHhHHHhhhccC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+..+.|.|++|+||||++..+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45688999999999999999998653
No 211
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.71 E-value=0.12 Score=57.04 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=25.7
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+|+.++|.|+.|+|||||+..|+...
T Consensus 379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999999999998754
No 212
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=89.59 E-value=0.15 Score=49.47 Aligned_cols=30 Identities=30% Similarity=0.370 Sum_probs=25.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.+..++|.|++|+|||+|+..+++..+..+
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~ 78 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356689999999999999999998875543
No 213
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=89.56 E-value=0.098 Score=47.19 Aligned_cols=25 Identities=44% Similarity=0.615 Sum_probs=22.7
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+|..++|.|++|+||||++..++..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5778999999999999999999875
No 214
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.50 E-value=0.13 Score=46.12 Aligned_cols=29 Identities=28% Similarity=0.330 Sum_probs=19.9
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
++..+.|.|.+|+||||++..+++.....
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 56678999999999999999999765543
No 215
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=89.42 E-value=0.1 Score=54.26 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=28.0
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.+.+|+.++|.|++|+|||||+..|++....
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 56789999999999999999999999976543
No 216
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=89.29 E-value=0.11 Score=56.11 Aligned_cols=29 Identities=21% Similarity=0.157 Sum_probs=26.4
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 288 l~i~~GeVI~LVGpNGSGKTTLl~~LAgl 316 (503)
T 2yhs_A 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQ 316 (503)
T ss_dssp CCSCTTEEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeccCCeEEEEECCCcccHHHHHHHHHHH
Confidence 46789999999999999999999998865
No 217
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.12 E-value=0.11 Score=53.52 Aligned_cols=29 Identities=24% Similarity=0.139 Sum_probs=26.1
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+.+|+.++|+|++|+|||||+..|+..
T Consensus 152 l~~~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 152 LGFRKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp CCSSSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred eecCCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 35789999999999999999999999875
No 218
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=89.05 E-value=0.14 Score=51.17 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.3
Q ss_pred ccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.++|.|++|+|||+|+..+++..+..+
T Consensus 53 ~vLl~GppGtGKT~la~aia~~~~~~~ 79 (322)
T 3eie_A 53 GILLYGPPGTGKSYLAKAVATEANSTF 79 (322)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHTCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHHCCCE
Confidence 478999999999999999998876543
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.00 E-value=0.13 Score=54.54 Aligned_cols=30 Identities=20% Similarity=0.113 Sum_probs=25.9
Q ss_pred ccccccCCc--cccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGT--CAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr--~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+-+|+. ++|+|++|+|||||+..|+..
T Consensus 34 sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 367889999 999999999999999998765
No 220
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=88.96 E-value=0.44 Score=41.70 Aligned_cols=35 Identities=14% Similarity=0.096 Sum_probs=26.4
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGE 281 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGe 281 (516)
+..+.|.|++|+|||+++..|++... -.++.-|.+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~--~~~~~~~~~ 61 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT--PWVSPARVE 61 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS--CEECCSSTT
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC--CeEEechhh
Confidence 45689999999999999999998765 334444443
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.94 E-value=0.15 Score=45.92 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=21.8
Q ss_pred CccccCCCCCCCchHhHHHhhhccC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.+++|.|++|+||||++..|++...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999998643
No 222
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.80 E-value=0.12 Score=47.04 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++|+|++|+|||||+..++...
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999998753
No 223
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=88.79 E-value=0.13 Score=47.47 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.4
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.++|.|++|+||||++..|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999987
No 224
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.73 E-value=0.14 Score=46.72 Aligned_cols=26 Identities=19% Similarity=0.144 Sum_probs=23.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|-.+.|.|++|+||||++..+++..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56779999999999999999999875
No 225
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=88.72 E-value=0.12 Score=46.80 Aligned_cols=28 Identities=29% Similarity=0.290 Sum_probs=23.9
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.-+|..+.+.|.+|+||||++..+++..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467789999999999999999998763
No 226
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.70 E-value=0.12 Score=47.31 Aligned_cols=26 Identities=27% Similarity=0.321 Sum_probs=22.7
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|..+.|.|++|+||||++..|++..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999764
No 227
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=88.69 E-value=0.11 Score=47.72 Aligned_cols=21 Identities=29% Similarity=0.762 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
+++|.|++|+||||++..|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 588999999999999999998
No 228
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=88.68 E-value=0.17 Score=48.41 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.6
Q ss_pred cccCCCCCCCchHhHHHhhhccCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
++|.|++|+|||+|+..|++....
T Consensus 47 vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred EEEECCCCCcHHHHHHHHHHHhCC
Confidence 889999999999999999987644
No 229
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.63 E-value=0.19 Score=54.17 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=24.4
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
+-+| ++|.|++|+|||+|+..|++.....
T Consensus 63 ip~G--vLL~GppGtGKTtLaraIa~~~~~~ 91 (499)
T 2dhr_A 63 IPKG--VLLVGPPGVGKTHLARAVAGEARVP 91 (499)
T ss_dssp CCSE--EEEECSSSSSHHHHHHHHHHHTTCC
T ss_pred CCce--EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3455 9999999999999999999877544
No 230
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.61 E-value=0.16 Score=50.23 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.4
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+-.+|.-+.|.|++|+||||++..+++...
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 344556688999999999999999987653
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.52 E-value=0.62 Score=49.46 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.7
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++..+++.|++|+||||++..||.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 5667899999999999999988864
No 232
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.50 E-value=0.61 Score=53.72 Aligned_cols=37 Identities=32% Similarity=0.522 Sum_probs=27.8
Q ss_pred CccccCCCCCCCchHhHHHhhhcc------CCCEEEEEeeCCc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS------NSDTVVYVGCGER 282 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~------~~d~~V~~~iGeR 282 (516)
..++|.|..|+|||+|+.+++++. ..+.++++-+++.
T Consensus 148 ~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~ 190 (1249)
T 3sfz_A 148 GWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQ 190 (1249)
T ss_dssp EEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSC
T ss_pred CEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCc
Confidence 357899999999999999988752 2345666666663
No 233
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.48 E-value=0.15 Score=46.07 Aligned_cols=25 Identities=28% Similarity=0.227 Sum_probs=21.3
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+...+.|.|++|+|||+|+..+++.
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3345999999999999999998875
No 234
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.46 E-value=0.12 Score=47.15 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++|+|++|+|||||+..++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998764
No 235
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=88.31 E-value=0.14 Score=45.28 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999865
No 236
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.29 E-value=0.14 Score=46.88 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.4
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..+.|.|++|+|||+|+..|++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999988764
No 237
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.21 E-value=0.19 Score=46.13 Aligned_cols=23 Identities=22% Similarity=0.475 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++|.|++|+||||++..|++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 238
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.11 E-value=0.17 Score=45.49 Aligned_cols=29 Identities=38% Similarity=0.460 Sum_probs=23.5
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.-+.+.+| ..+|+|+.|+|||||+..|.-
T Consensus 20 ~~~~~~~g-~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 20 VVIPFSKG-FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEECCSS-EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEecCCC-cEEEECCCCCCHHHHHHHHHH
Confidence 34556666 889999999999999998764
No 239
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.10 E-value=0.15 Score=46.17 Aligned_cols=28 Identities=14% Similarity=0.130 Sum_probs=24.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.++-.+.|.|++|+||||++..+++...
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999997653
No 240
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.09 E-value=0.14 Score=52.69 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=25.4
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+-+|+.++|.|++|+|||||+..|++..
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 6789999999999999999999988753
No 241
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=88.07 E-value=0.15 Score=45.92 Aligned_cols=27 Identities=30% Similarity=0.266 Sum_probs=23.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++..+.|.|++|+||||++..+++...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 455688999999999999999998653
No 242
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=87.98 E-value=1.4 Score=44.40 Aligned_cols=29 Identities=17% Similarity=0.108 Sum_probs=25.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+...+|..++|.|++|+|||||+..|+..
T Consensus 51 ~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 51 PYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp GGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 45789999999999999999999988753
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.96 E-value=0.18 Score=54.47 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.5
Q ss_pred cccccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 240 FPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 240 ~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+.+.+|+.++|.|+.|+|||||+..|++....+.
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 4456899999999999999999999988765543
No 244
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=87.93 E-value=0.15 Score=59.21 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=27.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhh
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.=+.+.+|++++|.|++|+|||||+..|+.
T Consensus 454 vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 454 TQLRLKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 346889999999999999999999999984
No 245
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=87.93 E-value=0.17 Score=44.11 Aligned_cols=21 Identities=33% Similarity=0.425 Sum_probs=18.2
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++|.|++|+||||++..+ +..
T Consensus 4 I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 4 ILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEECCCCCCHHHHHHHH-HHC
Confidence 678999999999999999 443
No 246
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.89 E-value=0.16 Score=47.74 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=22.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
-++..+.|.|++|+||||++..|++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3566789999999999999999997653
No 247
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=87.83 E-value=0.91 Score=53.45 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.5
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc----C-CCEEEEEeeCCch
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS----N-SDTVVYVGCGERG 283 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~----~-~d~~V~~~iGeR~ 283 (516)
..-++|.|+.|+|||||+.++++.. + .+-++++-+++..
T Consensus 150 ~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~ 193 (1221)
T 1vt4_I 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193 (1221)
T ss_dssp SCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSS
T ss_pred CeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCC
Confidence 3568999999999999999988532 1 1225555566654
No 248
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=87.80 E-value=0.17 Score=47.17 Aligned_cols=27 Identities=19% Similarity=0.149 Sum_probs=23.3
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+|-.+.|.|++|+||||++..|++...
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456789999999999999999998654
No 249
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.78 E-value=0.16 Score=45.15 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=19.2
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.+.|.|++|+||||++..+++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 367899999999999999998
No 250
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=87.77 E-value=0.18 Score=54.73 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.3
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..-+|+..+|+|++|+|||||+..|+...
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34589999999999999999999998753
No 251
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.65 E-value=0.31 Score=55.52 Aligned_cols=27 Identities=26% Similarity=0.540 Sum_probs=23.9
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
..++++||||+|||.|+..+|+..+..
T Consensus 512 ~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred ceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 458999999999999999999988664
No 252
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.64 E-value=0.15 Score=45.83 Aligned_cols=22 Identities=41% Similarity=0.460 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++.|+|++|+|||+|+..+++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999999874
No 253
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=87.64 E-value=0.26 Score=49.86 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.5
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+..+++.|++|+|||+++..|++..+..+
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~~~~ 79 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLDVPF 79 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 44588999999999999999999876543
No 254
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.63 E-value=0.29 Score=55.52 Aligned_cols=32 Identities=22% Similarity=0.193 Sum_probs=27.7
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+..|..++|.|++|+|||+|+..|++......
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~ 266 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFF 266 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcE
Confidence 56788899999999999999999998876544
No 255
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.62 E-value=0.21 Score=45.90 Aligned_cols=25 Identities=20% Similarity=0.193 Sum_probs=21.5
Q ss_pred CccccCCCCCCCchHhHHHhhhccC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
-.+.|.|++|+||||++..|++...
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3588999999999999999997643
No 256
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.59 E-value=0.15 Score=45.72 Aligned_cols=26 Identities=15% Similarity=0.110 Sum_probs=22.0
Q ss_pred CCccccCCCCCCCchHhHHHhhhccC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+-.++|.|++|+||||++..+++...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999987643
No 257
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=87.58 E-value=0.18 Score=60.30 Aligned_cols=33 Identities=30% Similarity=0.560 Sum_probs=29.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.=+.|-+||+++|+|++|+|||||+..|.+-.+
T Consensus 1098 isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1098 LSFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp EEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred eeEEECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 346899999999999999999999999988654
No 258
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=87.50 E-value=0.19 Score=54.40 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.+|.-++|.||+|+|||+|+..|++......
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 3799999999999999999999998775543
No 259
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=87.49 E-value=0.26 Score=48.23 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.8
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
...++|.|++|+|||+|+..+++.....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~~ 65 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGVN 65 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTCC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568999999999999999999876544
No 260
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=87.47 E-value=0.17 Score=45.79 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.6
Q ss_pred ccccCCCCCCCchHhHHHhhhccCC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
.+.|.|++|+||||++..|++....
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 4789999999999999999986543
No 261
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.39 E-value=0.15 Score=50.27 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++|.|++|+|||||+..|+....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999999999999999987543
No 262
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=87.20 E-value=0.18 Score=45.17 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.2
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++.|.|++|+||||++..|++...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999997653
No 263
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.17 E-value=0.21 Score=45.67 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.0
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.++|.|++|+||||++..|++...
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999997653
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.06 E-value=0.17 Score=51.96 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=24.6
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-..+|+.++|.|++|+|||||+..|++..
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 34677799999999999999999887653
No 265
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=87.06 E-value=0.15 Score=46.18 Aligned_cols=27 Identities=22% Similarity=0.138 Sum_probs=23.4
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++..++|.|++|+||||++..+++...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998653
No 266
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=87.02 E-value=0.18 Score=50.34 Aligned_cols=27 Identities=19% Similarity=0.112 Sum_probs=22.9
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-.++..++|.|++|+|||||+..|++.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356777999999999999999988764
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=87.02 E-value=0.17 Score=51.41 Aligned_cols=28 Identities=21% Similarity=0.186 Sum_probs=25.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.-.+|..++|.|++|+|||||+..|+..
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999998865
No 268
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=86.85 E-value=0.2 Score=49.74 Aligned_cols=30 Identities=30% Similarity=0.376 Sum_probs=26.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
.|..+++.|++|+|||+|+..+++..+..+
T Consensus 45 ~~~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp HTCCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cCCeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 467899999999999999999998776554
No 269
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=86.82 E-value=0.2 Score=44.70 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+++.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999864
No 270
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.76 E-value=0.2 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6789999999999999998865
No 271
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.74 E-value=0.19 Score=46.96 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=23.4
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+|-++.|.|++|+||||++..|++...
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998653
No 272
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=86.71 E-value=0.22 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=20.8
Q ss_pred cccCCCCCCCchHhHHHhhhccCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
+.|.|++|+|||||+..||+..+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhcCCC
Confidence 578999999999999999986543
No 273
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.66 E-value=0.2 Score=43.10 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 67899999999999999988754
No 274
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=86.65 E-value=0.29 Score=49.74 Aligned_cols=28 Identities=25% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
...++|.|++|+|||+|+..|++..+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~ 144 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGAT 144 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 3458899999999999999999887554
No 275
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=86.61 E-value=0.2 Score=43.03 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.++.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 68899999999999999887653
No 276
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=86.61 E-value=0.16 Score=56.12 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhh
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
=+.+.+|+.++|.|++|+|||||+..|.
T Consensus 342 sl~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 342 SVKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 3688999999999999999999997553
No 277
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=86.53 E-value=0.2 Score=45.64 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+.|.|++|+|||+|+..+++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
No 278
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.52 E-value=0.2 Score=43.75 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+.+.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 6889999999999999988764
No 279
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.43 E-value=0.17 Score=53.17 Aligned_cols=21 Identities=29% Similarity=0.488 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.++|.|++|+|||||+..|+.
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 999999999999999999986
No 280
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.43 E-value=0.18 Score=58.56 Aligned_cols=36 Identities=25% Similarity=0.318 Sum_probs=30.8
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
|.=+.+.+|++++|.|++|+|||||+..|+.....+
T Consensus 691 dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~ 726 (986)
T 2iw3_A 691 DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPT 726 (986)
T ss_dssp EEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCS
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 345678999999999999999999999999865443
No 281
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=86.39 E-value=0.18 Score=45.22 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+.|.|++|+||||++..|++..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999998754
No 282
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=86.38 E-value=0.21 Score=52.11 Aligned_cols=27 Identities=22% Similarity=0.186 Sum_probs=24.6
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhh
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.+.+|.+++|+|++|+|||||+.+|++
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 456889999999999999999999987
No 283
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=86.31 E-value=0.25 Score=43.59 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+++|.|++|+||||++..+++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998643
No 284
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=86.26 E-value=0.22 Score=48.56 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhcc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+..++|.|++|+|||+|+..+++..
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4458999999999999999888753
No 285
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.21 E-value=0.24 Score=47.01 Aligned_cols=26 Identities=23% Similarity=0.254 Sum_probs=22.8
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+|.+++|.|++|+||||++..|++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56679999999999999999999754
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=86.13 E-value=0.2 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.591 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.++|.|++|+||||++..+++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5889999999999999999986
No 287
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=85.90 E-value=0.23 Score=42.67 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999988764
No 288
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.87 E-value=0.21 Score=42.82 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+..+
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999998765
No 289
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=85.81 E-value=0.25 Score=43.79 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.1
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.+.|.|++|+||||++..+++...
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998643
No 290
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=85.79 E-value=0.24 Score=49.60 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=22.8
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++.+.|.|++|+|||+|+..|++..
T Consensus 151 ~~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 151 EQKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp SCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999988754
No 291
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=85.77 E-value=0.24 Score=43.00 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6889999999999999988865
No 292
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.76 E-value=0.22 Score=46.25 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=24.1
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.+|..+.|.|.+|+||||++..|++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567789999999999999999998754
No 293
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.74 E-value=0.3 Score=58.25 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=30.4
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.=+.+.+|++++|.|++|+|||||+..|++-.+.+
T Consensus 1052 vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~ 1086 (1284)
T 3g5u_A 1052 LSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM 1086 (1284)
T ss_dssp CCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC
Confidence 34689999999999999999999999999865443
No 294
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=85.71 E-value=0.24 Score=42.78 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999887653
No 295
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=85.68 E-value=0.38 Score=48.78 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
...+++.|++|+|||+|+..|++..+..
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~~ 99 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDIP 99 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468899999999999999999887544
No 296
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=85.59 E-value=0.23 Score=44.87 Aligned_cols=22 Identities=32% Similarity=0.446 Sum_probs=19.7
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++|.|++|+||||++..+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998764
No 297
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=85.54 E-value=0.24 Score=43.05 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|++|+|||+|+..+.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6789999999999999998754
No 298
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.53 E-value=0.25 Score=42.78 Aligned_cols=22 Identities=32% Similarity=0.335 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999998864
No 299
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.52 E-value=0.24 Score=47.33 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=25.9
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
...+|..+.|.|++|+||||++..|++...
T Consensus 22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 355788899999999999999999987654
No 300
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=85.50 E-value=0.25 Score=42.64 Aligned_cols=22 Identities=18% Similarity=0.321 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999998765
No 301
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=85.50 E-value=0.23 Score=46.34 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=22.9
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++..+.|.|++|+||||++..|++..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 445788999999999999999997653
No 302
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.50 E-value=0.25 Score=44.34 Aligned_cols=22 Identities=36% Similarity=0.477 Sum_probs=19.8
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++|.|++|+||||++..+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998854
No 303
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=85.45 E-value=0.28 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=22.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhccC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+.++.|.|++|+||||++..|++...
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999998754
No 304
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=85.44 E-value=0.28 Score=58.45 Aligned_cols=35 Identities=26% Similarity=0.374 Sum_probs=30.2
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
.=+.+-+|++++|.|++|+|||||+..|.+..+.+
T Consensus 409 isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~ 443 (1284)
T 3g5u_A 409 LNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL 443 (1284)
T ss_dssp EEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence 34689999999999999999999999998865443
No 305
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=85.44 E-value=0.16 Score=49.78 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=25.8
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCEEEEEee
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC 279 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~i 279 (516)
+-+.|.|++|+|||+|+.++++.....+ +|.-+
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~-~~~~~ 63 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPY-IYLDL 63 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCE-EEEEG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCE-EEEEc
Confidence 5789999999999999999988765443 44443
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=85.39 E-value=0.24 Score=47.56 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.2
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++-+++|.|++|+||||++..|++..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 34468999999999999999998754
No 307
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.36 E-value=0.32 Score=52.02 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred cccCCCCCCCchHhHHHhhhccCCC
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
++|.|++|+|||+|+..|++..+..
T Consensus 52 vLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCC
Confidence 8899999999999999999876554
No 308
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=85.29 E-value=0.29 Score=51.49 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCE
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDT 273 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~ 273 (516)
+..+++.||||+|||+|+..+|+....++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~ 91 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKV 91 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTS
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCc
Confidence 35699999999999999999998876333
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.28 E-value=0.26 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.115 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++.|.|++|+||||++..|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998653
No 310
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=85.21 E-value=0.21 Score=43.33 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 6789999999999999988754
No 311
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=85.13 E-value=0.74 Score=50.55 Aligned_cols=21 Identities=29% Similarity=0.297 Sum_probs=17.4
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
=.+|.||||||||+.+.+++.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~ 227 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIIL 227 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHH
Confidence 368999999999998876654
No 312
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.03 E-value=0.58 Score=44.74 Aligned_cols=41 Identities=22% Similarity=0.376 Sum_probs=30.3
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCC-C-EEEEEeeCCchhH
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNS-D-TVVYVGCGERGNE 285 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~-d-~~V~~~iGeR~~E 285 (516)
+.-+.|.|++|+|||+|+..|++.... + -+++.-|..-..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~ 71 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN 71 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChh
Confidence 456889999999999999999987542 2 3566666665443
No 313
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=85.03 E-value=0.23 Score=49.40 Aligned_cols=28 Identities=21% Similarity=0.062 Sum_probs=23.5
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.-+++..++|.|++|+||||++..+++.
T Consensus 32 ~~~~~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 32 QPRDLPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CTTCCCCEEEECSTTSSHHHHHHTHHHH
T ss_pred hCCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4456666999999999999999998874
No 314
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=84.95 E-value=0.28 Score=42.40 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+..+
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6789999999999999988764
No 315
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=84.92 E-value=0.34 Score=55.01 Aligned_cols=50 Identities=20% Similarity=0.332 Sum_probs=35.0
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCCEEEEE-------eeCCchhHHHHHHH
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYV-------GCGERGNEMAEVLM 291 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~-------~iGeR~~Ev~e~~~ 291 (516)
+..|..+++.|++|+|||+|+..||+..+..++.+- .+|+....+..+++
T Consensus 508 ~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~ 564 (806)
T 1ypw_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFD 564 (806)
T ss_dssp CCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHH
T ss_pred CCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHH
Confidence 457888999999999999999999987654322111 24565555665554
No 316
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=84.91 E-value=0.27 Score=43.04 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+..+.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 57899999999999999987653
No 317
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=84.90 E-value=11 Score=41.28 Aligned_cols=50 Identities=16% Similarity=0.097 Sum_probs=34.1
Q ss_pred cccccccCCccccCCCCCCCchHhHHHhhh----ccCCCEEEEEeeCCchhHHH
Q 010179 238 ALFPSVLGGTCAIPGAFGCGKTVISQALSK----YSNSDTVVYVGCGERGNEMA 287 (516)
Q Consensus 238 ~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~----~~~~d~~V~~~iGeR~~Ev~ 287 (516)
..+.+.++.-++|.|.+|+|||+++..|+. ....+-+-+.+|.-++.|..
T Consensus 207 v~~DL~k~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~eLs 260 (574)
T 2iut_A 207 IITDLAKMPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKMLELS 260 (574)
T ss_dssp EEEEGGGSCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSHHHH
T ss_pred EEEEhhhCCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChhhhH
Confidence 345667889999999999999999886443 22333344446666665654
No 318
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=84.90 E-value=0.26 Score=47.79 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.3
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.+.|.|++|+||||++..|++..+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999997643
No 319
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=84.88 E-value=1.7 Score=43.28 Aligned_cols=45 Identities=22% Similarity=0.208 Sum_probs=29.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCCchhHHHH
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGERGNEMAE 288 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGeR~~Ev~e 288 (516)
+|..+++.|++|+||||++..+|... ...-+.++...-+.....+
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ 143 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALE 143 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHH
Confidence 48889999999999999999887542 1222444444433333333
No 320
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=84.87 E-value=0.26 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|++|+|||+|+..+.++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988764
No 321
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=84.84 E-value=0.28 Score=42.48 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 67899999999999999887653
No 322
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.81 E-value=0.34 Score=53.43 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.2
Q ss_pred cccccccC-----CccccCCCCCCCchHhHHHhhhcc
Q 010179 238 ALFPSVLG-----GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 238 ~l~pigkG-----qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.-+.+.+| +.++|.|++|+|||||+..|+.-.
T Consensus 366 vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 366 FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred eEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 34556666 789999999999999999998653
No 323
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=84.79 E-value=0.28 Score=43.96 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.2
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++++|++|+|||+|+..+....
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988764
No 324
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=84.78 E-value=0.25 Score=42.80 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999988653
No 325
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=84.76 E-value=0.7 Score=52.55 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.7
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+...+++.|++|+|||+|+..+++..
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 445568999999999999999988754
No 326
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=84.73 E-value=0.28 Score=43.36 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+.++
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998864
No 327
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.65 E-value=0.27 Score=51.70 Aligned_cols=34 Identities=21% Similarity=0.160 Sum_probs=27.5
Q ss_pred ccccccccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 235 VLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 235 aID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++.++ ..+|+.++|.|+.|+|||||+..|++..
T Consensus 158 ~L~~l~-~~~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 158 NFRRLI-KRPHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp HHHHHH-TSSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHH-HhcCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 455443 3689999999999999999999887654
No 328
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=84.64 E-value=0.29 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68899999999999999887653
No 329
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=84.57 E-value=0.3 Score=42.79 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+.++
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999988865
No 330
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=84.54 E-value=0.29 Score=43.27 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|++++|++|+|||+|+..+.++.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68899999999999999988653
No 331
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=84.51 E-value=0.27 Score=43.03 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.+.
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988764
No 332
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=84.40 E-value=0.29 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++.|+||||+||+|++..|++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999764
No 333
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=84.19 E-value=0.31 Score=42.32 Aligned_cols=23 Identities=35% Similarity=0.206 Sum_probs=20.4
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+++++|.+|+|||+|+..+.++
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999998764
No 334
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=84.14 E-value=0.26 Score=49.00 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.9
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++++++|+|.+|+|||||+..|...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 5568999999999999999988754
No 335
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=84.07 E-value=0.28 Score=42.98 Aligned_cols=22 Identities=18% Similarity=0.333 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999998865
No 336
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=83.94 E-value=0.32 Score=43.17 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|++|+|||+|+..+.+.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988765
No 337
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=83.89 E-value=0.33 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.|+|.+|+|||+|+..+.++.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999887653
No 338
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=83.87 E-value=0.33 Score=42.41 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999987653
No 339
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=83.86 E-value=0.28 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=22.3
Q ss_pred ccccccCCccccCCCCCCCchHhH
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVIS 262 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll 262 (516)
=+.+-+|+.++|.|++|+|||||+
T Consensus 38 sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 38 DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EEEEETTSEEEEECSTTSSHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHh
Confidence 468899999999999999999996
No 340
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=83.80 E-value=0.3 Score=44.27 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=21.3
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.-+++++|++|+|||+|+..+.++.
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34489999999999999999988753
No 341
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=83.80 E-value=0.49 Score=49.66 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.8
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
..++|+|++|+|||+|+..+++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999887
No 342
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=83.77 E-value=0.34 Score=51.97 Aligned_cols=29 Identities=17% Similarity=0.174 Sum_probs=24.8
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+.+.+ +.++|.|++|+|||||+..|+.-
T Consensus 24 sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 24 TFDFDE-LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp EEECCS-SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEcc-ceEEEECCCCCcHHHHHHHHhcC
Confidence 356777 89999999999999999988753
No 343
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=83.69 E-value=0.34 Score=42.74 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988754
No 344
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=83.62 E-value=0.34 Score=43.28 Aligned_cols=23 Identities=26% Similarity=0.379 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..++.+.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68899999999999999988653
No 345
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=83.61 E-value=0.29 Score=43.47 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5789999999999999998865
No 346
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=83.60 E-value=0.48 Score=46.34 Aligned_cols=32 Identities=16% Similarity=0.208 Sum_probs=25.8
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCCEEEEEee
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGC 279 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~i 279 (516)
|+-+.|.|++|+|||+|+.++++..+ ++|+-+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~---~~~~~~ 62 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP---GILIDC 62 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS---EEEEEH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC---cEEEEe
Confidence 57899999999999999999988763 455444
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=83.57 E-value=0.48 Score=45.79 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=21.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++..+.|.|.+|+||||++..+++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456889999999999999999875
No 348
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=83.50 E-value=0.29 Score=43.17 Aligned_cols=23 Identities=17% Similarity=0.187 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.++|.+|+|||+|+..+.++.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68899999999999999988753
No 349
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=83.48 E-value=0.2 Score=54.53 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=26.2
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+-+|+.+.|.|++|+|||||+..|++..
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L 393 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARL 393 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhh
Confidence 46789999999999999999999998764
No 350
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=83.41 E-value=0.35 Score=42.55 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5889999999999999988864
No 351
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=83.41 E-value=0.35 Score=43.38 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++|+|.+|+|||+|+..+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999888653
No 352
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=83.41 E-value=0.35 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6889999999999999988764
No 353
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=83.34 E-value=0.3 Score=43.37 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68899999999999999887653
No 354
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=83.27 E-value=0.41 Score=41.94 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=21.4
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.-+++++|++|+|||+|+..+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457899999999999999998764
No 355
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.25 E-value=0.35 Score=47.06 Aligned_cols=36 Identities=22% Similarity=0.386 Sum_probs=26.2
Q ss_pred CccccCCCCCCCchHhHHHhhhccCC--CEEEEEeeCC
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNS--DTVVYVGCGE 281 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~--d~~V~~~iGe 281 (516)
+.++|.|++|+|||+++..|++.... .-+++.-|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~ 85 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTE 85 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccc
Confidence 35789999999999999999986422 2245555543
No 356
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=83.18 E-value=0.36 Score=42.70 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988865
No 357
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.13 E-value=0.35 Score=47.83 Aligned_cols=26 Identities=27% Similarity=0.302 Sum_probs=22.5
Q ss_pred CCccccCCCCCCCchHhHHHhhhccC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++-++|.|++|+|||+|+..+++...
T Consensus 45 ~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CceEEEECCCCccHHHHHHHHHHhCc
Confidence 44599999999999999999998654
No 358
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=83.09 E-value=0.17 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.170 Sum_probs=21.0
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.++|.|++|+|||||+..|++..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999988764
No 359
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=83.09 E-value=0.32 Score=43.57 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.4
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+++++|.+|+|||+|+..+.++
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36889999999999999998865
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=83.04 E-value=0.33 Score=42.43 Aligned_cols=22 Identities=18% Similarity=0.142 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988754
No 361
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=83.01 E-value=1.7 Score=45.11 Aligned_cols=26 Identities=19% Similarity=0.084 Sum_probs=21.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+..-+.+.|++|+||||++..++...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34557789999999999999998754
No 362
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=83.00 E-value=0.37 Score=42.30 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+..+.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68899999999999999887653
No 363
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=82.96 E-value=0.35 Score=45.27 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=18.5
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.|.||+|+|||||+..+....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 4589999999999999887553
No 364
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=82.95 E-value=0.42 Score=46.41 Aligned_cols=24 Identities=21% Similarity=0.173 Sum_probs=21.4
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-|.||+|++|+||||++..|++..
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998764
No 365
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.89 E-value=0.34 Score=43.30 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.6
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++|.|++|+||||++..+++..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998754
No 366
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=82.88 E-value=0.39 Score=46.00 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=22.8
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.|..+.|.|++|+|||+|+.++++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 46678999999999999999998764
No 367
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=82.86 E-value=0.33 Score=43.37 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+.++
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999998865
No 368
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=82.83 E-value=0.38 Score=44.91 Aligned_cols=22 Identities=23% Similarity=0.518 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.++|.|++|+||||++..++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999986
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.82 E-value=0.36 Score=46.22 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++|.|++|+||||++..|++..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999998753
No 370
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=82.80 E-value=0.38 Score=42.30 Aligned_cols=24 Identities=21% Similarity=0.284 Sum_probs=20.8
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+++++|.+|+|||+|+..+.++.
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 368899999999999999888653
No 371
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.74 E-value=1.1 Score=47.48 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=21.9
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++..+++.|++|+||||++..||..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5778899999999999999988754
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=82.72 E-value=0.36 Score=48.99 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=19.4
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+||.|++|+|||||+..|+..
T Consensus 94 iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999988754
No 373
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=82.71 E-value=0.38 Score=43.79 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++|.|++|+||||++..+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999998854
No 374
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.66 E-value=0.35 Score=48.25 Aligned_cols=26 Identities=23% Similarity=0.286 Sum_probs=23.5
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+|+.+++.|+.|+||||++..||..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~ 128 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAI 128 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999988865
No 375
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=82.62 E-value=0.39 Score=42.89 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.+.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5889999999999999988865
No 376
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=82.57 E-value=0.44 Score=52.04 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=26.0
Q ss_pred ccccCCccccCCCCCCCchHhHHHhhhccC
Q 010179 241 PSVLGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 241 pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
-+-.|+.++|.|++|+|||||+..|++...
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred cccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 355778999999999999999999998653
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.51 E-value=0.6 Score=43.87 Aligned_cols=37 Identities=22% Similarity=0.107 Sum_probs=27.2
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc----CCCEEEEEeeC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS----NSDTVVYVGCG 280 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~----~~d~~V~~~iG 280 (516)
.|.-++|.|++|+|||||+.++++.- ..|.+.+-..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~~ 55 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQEN 55 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEESS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEeC
Confidence 46678999999999999999887653 34555554443
No 378
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=82.47 E-value=0.39 Score=44.02 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999988753
No 379
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=82.47 E-value=0.39 Score=45.33 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|++++|.+|+|||+|+..|.+..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68899999999999999988654
No 380
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=82.44 E-value=0.4 Score=42.94 Aligned_cols=23 Identities=22% Similarity=0.140 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58899999999999999887653
No 381
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=82.43 E-value=0.43 Score=57.05 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=29.4
Q ss_pred ccccccCCccccCCCCCCCchHhHHHhhhccCC
Q 010179 239 LFPSVLGGTCAIPGAFGCGKTVISQALSKYSNS 271 (516)
Q Consensus 239 l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~~~~ 271 (516)
=+.+-+|++++|+|++|+|||||+..|.+..+.
T Consensus 438 sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~ 470 (1321)
T 4f4c_A 438 NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV 470 (1321)
T ss_dssp EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred EEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence 467889999999999999999999999887654
No 382
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.43 E-value=0.59 Score=49.94 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=24.1
Q ss_pred CCccccCCCCCCCchHhHHHhhhccCCC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSNSD 272 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~~d 272 (516)
..-++|.|++|+|||+|+..+++..+..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~~ 104 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGYD 104 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3568999999999999999999987544
No 383
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.40 E-value=0.33 Score=48.00 Aligned_cols=23 Identities=35% Similarity=0.274 Sum_probs=20.6
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
..++|.|++|+|||+++..+++.
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~ 81 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKE 81 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 45999999999999999998876
No 384
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.39 E-value=0.38 Score=46.28 Aligned_cols=26 Identities=12% Similarity=0.175 Sum_probs=22.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+...++|.||||+|||+++..|++..
T Consensus 57 kkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 57 KKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp TCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cccEEEEECCCCCCHHHHHHHHHHHh
Confidence 33458999999999999999998864
No 385
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=82.35 E-value=0.4 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 68899999999999999887653
No 386
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=82.33 E-value=0.38 Score=43.12 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998765
No 387
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=82.31 E-value=0.4 Score=47.90 Aligned_cols=22 Identities=32% Similarity=0.267 Sum_probs=20.1
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++.|++|+|||+++..+++..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7999999999999999998863
No 388
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=82.29 E-value=0.36 Score=42.73 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+.+.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988765
No 389
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=82.28 E-value=0.41 Score=43.12 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+..+
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999988754
No 390
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=82.27 E-value=0.33 Score=43.57 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++.++|++|+|||+|+..+.+.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998865
No 391
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.18 E-value=0.38 Score=48.97 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCccccCCCCCCCchHhHHHhhhc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.+++|.|++|+|||||+..++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 678999999999999999998863
No 392
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=82.15 E-value=0.41 Score=42.56 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=20.9
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
=+++++|++|+|||+|+..+.++.
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999988654
No 393
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=82.11 E-value=0.41 Score=43.22 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68899999999999999887653
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=82.00 E-value=0.42 Score=44.36 Aligned_cols=22 Identities=27% Similarity=0.572 Sum_probs=20.0
Q ss_pred CccccCCCCCCCchHhHHHhhh
Q 010179 246 GTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
-.++|.|++|+||||++..++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999987
No 395
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=81.99 E-value=0.62 Score=50.10 Aligned_cols=38 Identities=18% Similarity=0.260 Sum_probs=28.6
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhccCCC-EEEEEee
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYSNSD-TVVYVGC 279 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d-~~V~~~i 279 (516)
+..|..++|.|+||+|||+|+..|++..... ..++..|
T Consensus 38 l~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~ 76 (500)
T 3nbx_X 38 ALSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMT 76 (500)
T ss_dssp HHHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECC
T ss_pred HhcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3456789999999999999999999876443 2344444
No 396
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=81.99 E-value=0.37 Score=50.61 Aligned_cols=33 Identities=15% Similarity=0.165 Sum_probs=28.4
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhhhc
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-|.-+.+-.|..++|+|++|+|||||+..|+..
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~ 180 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRA 180 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSS
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 345567788999999999999999999998865
No 397
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=81.81 E-value=0.41 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=20.7
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.+.|.|++|+||||++..|++...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999987653
No 398
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=81.77 E-value=0.44 Score=42.86 Aligned_cols=22 Identities=32% Similarity=0.292 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.++
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6889999999999999998865
No 399
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=81.67 E-value=0.44 Score=42.78 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999998864
No 400
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=81.66 E-value=0.3 Score=43.13 Aligned_cols=25 Identities=32% Similarity=0.134 Sum_probs=21.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.-+++++|++|+|||+|+..+.+.
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~ 41 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIG 41 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3447899999999999999988753
No 401
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=81.61 E-value=0.45 Score=43.03 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999887653
No 402
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=81.57 E-value=0.49 Score=49.52 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=23.4
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhc
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+..|.+++|+|.+|+|||||+..|.+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 457789999999999999999999865
No 403
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=81.51 E-value=0.4 Score=42.33 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6889999999999999988754
No 404
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=81.50 E-value=0.45 Score=42.59 Aligned_cols=22 Identities=18% Similarity=0.223 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999988764
No 405
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=81.41 E-value=0.37 Score=52.89 Aligned_cols=35 Identities=26% Similarity=0.318 Sum_probs=26.1
Q ss_pred ccccccccccCC-----ccccCCCCCCCchHhHHHhhhcc
Q 010179 235 VLDALFPSVLGG-----TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 235 aID~l~pigkGq-----r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+|.|-.+|.+. .++|+|++|+|||||+..|+.-.
T Consensus 30 ~id~l~~~gv~~~l~lp~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 30 LIDSLRALGVEQDLALPAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp HHHHHHHHSCCSSCCCCCEECCCCTTSCHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCCcccCCeEEEECCCCChHHHHHHHHhCCC
Confidence 355555555442 48999999999999999998653
No 406
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=81.30 E-value=0.72 Score=48.97 Aligned_cols=30 Identities=30% Similarity=0.418 Sum_probs=25.0
Q ss_pred CccccCCCCCCCchHhHHHhhhccCCCEEE
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYSNSDTVV 275 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V 275 (516)
..++++|++|+|||+++..+|+..+...+.
T Consensus 51 ~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 458899999999999999999887665443
No 407
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=81.26 E-value=0.34 Score=44.30 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.4
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+++++|++|+|||+|+..+.++
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999998764
No 408
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=81.24 E-value=0.66 Score=43.35 Aligned_cols=42 Identities=24% Similarity=0.340 Sum_probs=28.6
Q ss_pred cccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCc-hhHHHHHHH
Q 010179 248 CAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGER-GNEMAEVLM 291 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR-~~Ev~e~~~ 291 (516)
+.|.|++|+|||+++.+++.. . .-++|..-++. ..|+.+-+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCCCCCHHHHHHHH
Confidence 578999999999999999976 3 33688887764 445554444
No 409
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=81.24 E-value=0.47 Score=42.61 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999988653
No 410
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.19 E-value=0.47 Score=42.83 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999998865
No 411
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=81.19 E-value=0.39 Score=43.19 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|++++|.+|+|||+|+..+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 57899999999999999888654
No 412
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=81.09 E-value=0.48 Score=42.15 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6889999999999999988765
No 413
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=80.97 E-value=0.48 Score=43.29 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.4
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+..+.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999988653
No 414
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=80.95 E-value=0.39 Score=42.80 Aligned_cols=23 Identities=30% Similarity=0.251 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 67899999999999999988653
No 415
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=80.94 E-value=0.45 Score=43.94 Aligned_cols=25 Identities=24% Similarity=0.254 Sum_probs=20.5
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+|+-..|.|++|+||||++.+++++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 4667789999999999999776654
No 416
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=80.92 E-value=0.49 Score=42.89 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999988653
No 417
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=80.88 E-value=0.43 Score=43.02 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|++++|++|+|||+|+..+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999887653
No 418
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=80.77 E-value=0.5 Score=41.95 Aligned_cols=22 Identities=18% Similarity=-0.044 Sum_probs=18.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|+.++|.+|+|||+|+..+.+.
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~ 37 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSK 37 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5789999999999999777654
No 419
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.68 E-value=0.5 Score=47.53 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=29.1
Q ss_pred cccCCccccCCCCCCCchHhHHHhhhcc--CCCEEEEEeeCC
Q 010179 242 SVLGGTCAIPGAFGCGKTVISQALSKYS--NSDTVVYVGCGE 281 (516)
Q Consensus 242 igkGqr~~I~g~~g~GKT~Ll~~ia~~~--~~d~~V~~~iGe 281 (516)
..+|..++|.|++|+||||++..||... ...-+.++.+.-
T Consensus 101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 5678889999999999999999888652 222344444444
No 420
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=80.64 E-value=0.5 Score=43.03 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|+.++|.+|+|||+|+..+++.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988854
No 421
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=80.54 E-value=0.51 Score=45.15 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=19.5
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.|+||||+||+|++..|++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999764
No 422
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=80.44 E-value=0.4 Score=43.00 Aligned_cols=23 Identities=26% Similarity=0.202 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68899999999999999987654
No 423
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=80.31 E-value=0.46 Score=43.14 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|++++|.+|+|||+|+..+.++.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 68899999999999999988653
No 424
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=80.31 E-value=0.47 Score=42.41 Aligned_cols=24 Identities=29% Similarity=0.221 Sum_probs=20.9
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++++|.+|+|||+|+..+.++.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 478999999999999999988643
No 425
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=80.19 E-value=0.45 Score=43.43 Aligned_cols=21 Identities=19% Similarity=0.428 Sum_probs=19.0
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
++.++|.+|+|||+|+..+++
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 588999999999999998864
No 426
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=80.16 E-value=0.24 Score=45.51 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.5
Q ss_pred cccCCCCCCCchHhHHHhhhcc
Q 010179 248 CAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+.|.|++|+||||++..|++..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999998764
No 427
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=80.16 E-value=0.38 Score=42.56 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=9.3
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999987754
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=80.02 E-value=0.53 Score=43.12 Aligned_cols=23 Identities=22% Similarity=0.205 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57899999999999999988653
No 429
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=79.98 E-value=4.2 Score=42.81 Aligned_cols=25 Identities=28% Similarity=0.325 Sum_probs=22.6
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+|..+++.|++|+||||++..||..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 7888999999999999999988865
No 430
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=79.85 E-value=0.49 Score=45.83 Aligned_cols=22 Identities=41% Similarity=0.453 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||||+..+...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6889999999999999998754
No 431
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=79.60 E-value=0.5 Score=42.27 Aligned_cols=22 Identities=27% Similarity=0.300 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 6899999999999999998764
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=79.59 E-value=0.51 Score=42.61 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.2
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.+.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999988764
No 433
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=79.57 E-value=0.55 Score=42.35 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.2
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999988764
No 434
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=79.49 E-value=0.51 Score=43.51 Aligned_cols=22 Identities=23% Similarity=0.394 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999988765
No 435
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=79.48 E-value=0.6 Score=45.35 Aligned_cols=27 Identities=26% Similarity=0.174 Sum_probs=22.3
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++...++|.|++|+|||+++..+++..
T Consensus 44 ~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 44 GSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp TCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 343459999999999999999998763
No 436
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=79.40 E-value=0.52 Score=42.81 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+.+.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988764
No 437
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=79.37 E-value=0.5 Score=43.08 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.3
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999988764
No 438
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=79.31 E-value=0.59 Score=42.37 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=19.6
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|++|+|||+|+..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6789999999999999988754
No 439
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=79.13 E-value=0.53 Score=43.45 Aligned_cols=22 Identities=27% Similarity=0.490 Sum_probs=20.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|++|+|||+|+..+.++
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998865
No 440
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=79.12 E-value=0.59 Score=43.59 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998865
No 441
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=79.05 E-value=0.55 Score=46.60 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=17.3
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-.++|.|++|+||||++..+++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999998864
No 442
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=79.04 E-value=0.46 Score=47.32 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.2
Q ss_pred cccCCCCCCCchHhHHHhhhc
Q 010179 248 CAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 248 ~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++|+|++|+|||||+..|+..
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC-
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 389999999999999998754
No 443
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=78.89 E-value=0.54 Score=42.13 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999998865
No 444
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.87 E-value=0.99 Score=44.82 Aligned_cols=43 Identities=30% Similarity=0.489 Sum_probs=31.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC-CCE-EEEEeeCCchhHH
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN-SDT-VVYVGCGERGNEM 286 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~-~d~-~V~~~iGeR~~Ev 286 (516)
.+..++|.|++|+|||+++..|++... .+. .|++-|+.-..+.
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l 68 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESL 68 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHH
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHH
Confidence 355688999999999999999988652 222 5666666655544
No 445
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=78.65 E-value=0.58 Score=42.83 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.++
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6889999999999999888765
No 446
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=78.65 E-value=0.51 Score=42.77 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|++|+|||+|+..+..+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 68899999999999999987643
No 447
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=78.49 E-value=0.62 Score=42.93 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=19.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.++|.|++|+|||||+..|++.
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 4789999999999999987764
No 448
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=78.32 E-value=0.62 Score=45.09 Aligned_cols=27 Identities=26% Similarity=0.164 Sum_probs=22.3
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
++...++|.|++|+|||+++..+++..
T Consensus 36 ~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 36 KNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp TCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 344458999999999999999998763
No 449
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=78.29 E-value=0.73 Score=47.64 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=22.6
Q ss_pred cccCCc--cccCCCCCCCchHhHHHhhhc
Q 010179 242 SVLGGT--CAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 242 igkGqr--~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+-.|++ +.|.|++|+||||++..|++.
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 446667 999999999999999888754
No 450
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=78.22 E-value=0.66 Score=42.93 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|+.++|.+|+|||+|+..+.++
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5789999999999999998865
No 451
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=78.15 E-value=0.59 Score=42.73 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=20.5
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999988653
No 452
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=77.96 E-value=0.44 Score=42.90 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=4.4
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+..+
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999988765
No 453
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=77.96 E-value=11 Score=48.36 Aligned_cols=138 Identities=18% Similarity=0.156 Sum_probs=71.8
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc-CCCEEEEEeeC-CchhHHHHHHHhccccccCCCCCCccCCcceEEEEEeCCC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS-NSDTVVYVGCG-ERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSN 320 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~-~~d~~V~~~iG-eR~~Ev~e~~~~~~~~~~~~~~~~~~~~~~rtvvv~~tsd 320 (516)
..|.-++++||+|+|||+|+..+.... +..+..+-+-. -....+.+.++.. + +.....+..+....
T Consensus 1265 ~~~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~------~----~~~~~~~g~~~~P~-- 1332 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH------T----NYVTTSKGLTLLPK-- 1332 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH------B----CCEEETTTEEEEEB--
T ss_pred HCCCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH------h----hhccccCCccccCC--
Confidence 356789999999999999996554433 22222222222 2234444554431 0 00000011111111
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcc-hhHHHHHHHHHhhcCcccCC
Q 010179 321 MPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLAARLASFYERAGKVKCLG 399 (516)
Q Consensus 321 ~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~-~l~s~l~~l~ERag~~~~~~ 399 (516)
..|+..++++|++. +|..+.|-. .....|..++|.-|-...
T Consensus 1333 ---------------------~~gk~~VlFiDEin---------------mp~~d~yg~q~~lelLRq~le~gg~yd~-- 1374 (2695)
T 4akg_A 1333 ---------------------SDIKNLVLFCDEIN---------------LPKLDKYGSQNVVLFLRQLMEKQGFWKT-- 1374 (2695)
T ss_dssp ---------------------SSSSCEEEEEETTT---------------CSCCCSSSCCHHHHHHHHHHHTSSEECT--
T ss_pred ---------------------CCCceEEEEecccc---------------cccccccCchhHHHHHHHHHhcCCEEEc--
Confidence 15788999999986 355554432 345668888886554321
Q ss_pred CCCCC-----CceeEEEEEecCCCCCCchhhHhhhccc
Q 010179 400 GPERT-----GSVTIVGAVSPPGGDFSDPVTSATLSIV 432 (516)
Q Consensus 400 ~~~~~-----GSIT~i~~v~~~~~D~~dpv~~~~~~i~ 432 (516)
... -.+..+++.-++++--..+++....++.
T Consensus 1375 --~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf 1410 (2695)
T 4akg_A 1375 --PENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA 1410 (2695)
T ss_dssp --TTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE
T ss_pred --CCCcEEEecCEEEEEecCCCccCCCccCChhhhhee
Confidence 011 2377888887775222233433444433
No 454
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=77.69 E-value=0.7 Score=47.43 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=23.0
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++.-+.|.||.|+|||+|...||+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 334578999999999999999998764
No 455
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=77.61 E-value=0.59 Score=43.19 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=20.8
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.++.|.|.+|+|||||+..++++.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999888763
No 456
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=77.47 E-value=0.64 Score=42.28 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.+.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999988864
No 457
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=77.41 E-value=0.91 Score=41.91 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=22.2
Q ss_pred CCccccCCCCCCCchHhHHHhhhccC
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
+..++|.|++|+||||++..+++..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34688999999999999999998643
No 458
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=77.25 E-value=1 Score=47.25 Aligned_cols=40 Identities=13% Similarity=0.192 Sum_probs=26.9
Q ss_pred ccccCCCCCCCchHhHHHhhhcc---CC-CEEEEEeeCCchhHH
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS---NS-DTVVYVGCGERGNEM 286 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~---~~-d~~V~~~iGeR~~Ev 286 (516)
-+.|.|++|+|||+++..++++. .. .+.+.+..+.-..++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l 90 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKIL 90 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHH
Confidence 88999999999999999877652 22 344554444333333
No 459
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=77.02 E-value=0.66 Score=42.33 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.2
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.++.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58899999999999999987653
No 460
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=76.97 E-value=0.78 Score=43.99 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|++++|.+|+|||+|+..|..+.
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 67899999999999999988654
No 461
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=76.91 E-value=0.67 Score=42.22 Aligned_cols=22 Identities=23% Similarity=0.341 Sum_probs=19.8
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
++.++|.+|+|||+|+..+.++
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999988764
No 462
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=76.82 E-value=0.65 Score=42.85 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.3
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+.++
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6889999999999999988764
No 463
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=78.49 E-value=0.5 Score=42.91 Aligned_cols=23 Identities=22% Similarity=0.327 Sum_probs=20.0
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+++++|.+|+|||+|+..+.++
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 37899999999999999887754
No 464
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=76.75 E-value=0.79 Score=53.01 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=27.1
Q ss_pred cccccccccCCccccCCCCCCCchHhHHHhh
Q 010179 236 LDALFPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 236 ID~l~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
-|.-+.+.+|+.++|.||.|+||||++.+|+
T Consensus 653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred ccceeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 3566778899999999999999999999883
No 465
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=76.74 E-value=0.4 Score=46.22 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=20.3
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+..+|+||+|+|||||+.+|+..
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999998864
No 466
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=76.70 E-value=0.48 Score=43.44 Aligned_cols=22 Identities=23% Similarity=0.206 Sum_probs=19.4
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.++
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6789999999999999988753
No 467
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=76.60 E-value=0.63 Score=45.02 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.2
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++++|.+++|||+|+..+....
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 479999999999999999988653
No 468
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=76.51 E-value=0.34 Score=49.61 Aligned_cols=33 Identities=30% Similarity=0.458 Sum_probs=26.3
Q ss_pred ccccc-ccccccccCCccccCCCCCCCchHhHHHh
Q 010179 232 GQRVL-DALFPSVLGGTCAIPGAFGCGKTVISQAL 265 (516)
Q Consensus 232 GiraI-D~l~pigkGqr~~I~g~~g~GKT~Ll~~i 265 (516)
+.+++ |.=+.+.+| ..+|.|+.|+|||||+..|
T Consensus 47 nf~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI 80 (415)
T 4aby_A 47 NLATITQLELELGGG-FCAFTGETGAGKSIIVDAL 80 (415)
T ss_dssp EETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHH
T ss_pred cccceeeEEEecCCC-cEEEECCCCCCHHHHHHHH
Confidence 33444 334678899 9999999999999999877
No 469
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=76.42 E-value=0.84 Score=51.90 Aligned_cols=25 Identities=16% Similarity=0.033 Sum_probs=23.0
Q ss_pred ccCCccccCCCCCCCchHhHHHhhh
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.+|+.++|.||.|+|||||+.+|+.
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iag 629 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTAL 629 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHH
Confidence 6899999999999999999998764
No 470
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=76.42 E-value=0.86 Score=44.14 Aligned_cols=26 Identities=27% Similarity=0.181 Sum_probs=21.6
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+...+.|.|++|+|||+++..+++..
T Consensus 41 ~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 41 NMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 33348999999999999999988763
No 471
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=76.41 E-value=0.71 Score=44.00 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++|+|.+|+|||+|+..|..+
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999988754
No 472
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=76.35 E-value=0.55 Score=41.90 Aligned_cols=23 Identities=26% Similarity=0.070 Sum_probs=20.1
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
=+++++|.+|+|||+|+..+..+
T Consensus 23 ~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 37899999999999999988654
No 473
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=76.27 E-value=0.77 Score=42.36 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=19.1
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.++|.|++|+|||||+..|++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4788999999999999988765
No 474
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=76.22 E-value=0.82 Score=42.35 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
+++++|.+|+|||+|+..+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68899999999999999988653
No 475
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=76.07 E-value=0.78 Score=48.21 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=18.5
Q ss_pred ccCCCCCCCchHhHHHhhhc
Q 010179 249 AIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 249 ~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+|+|++|+|||||+..|+..
T Consensus 35 ~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 35 MVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp EEECCTTSSHHHHHHHHTTC
T ss_pred EEECCCCCcHHHHHHHHhCC
Confidence 89999999999999998865
No 476
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=75.98 E-value=0.83 Score=43.18 Aligned_cols=23 Identities=22% Similarity=0.167 Sum_probs=20.3
Q ss_pred ccccCCCCCCCchHhHHHhhhcc
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
|+.++|.+|||||+|+..+..+.
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCcCHHHHHHHHHhCC
Confidence 68899999999999999888653
No 477
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=75.97 E-value=0.73 Score=41.71 Aligned_cols=22 Identities=18% Similarity=0.196 Sum_probs=19.0
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|+.++|.+|+|||+|+..+.+.
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5789999999999999877654
No 478
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.75 E-value=0.97 Score=47.75 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.7
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhcc
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
.+...++|+|++|+|||+|+..+++..
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345568999999999999999988763
No 479
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=75.72 E-value=0.82 Score=44.91 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=19.9
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+...
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6889999999999999998864
No 480
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=75.71 E-value=0.72 Score=42.42 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=20.7
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-++.|.|.+|+|||||+..++.+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999999888763
No 481
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=75.62 E-value=0.84 Score=42.89 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|+.|+|.+|+|||+|+..+...
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6889999999999999988753
No 482
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=75.47 E-value=14 Score=48.22 Aligned_cols=137 Identities=16% Similarity=0.197 Sum_probs=75.9
Q ss_pred ccCCccccCCCCCCCchHhHHHhhhccCCCEEEEEeeCCc--hhHHHHHHHhccccccCCCCCCccCCcce-EEEEEeCC
Q 010179 243 VLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGER--GNEMAEVLMDFPQLTMTLPDGREESVMKR-TTLVANTS 319 (516)
Q Consensus 243 gkGqr~~I~g~~g~GKT~Ll~~ia~~~~~d~~V~~~iGeR--~~Ev~e~~~~~~~~~~~~~~~~~~~~~~r-tvvv~~ts 319 (516)
..|.-+++.|++|+|||+++....++.....++..-+..+ ...+...++..-+ . +. .++ .++....
T Consensus 1302 ~~~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e----~---~~---~~~~G~~~~p~- 1370 (3245)
T 3vkg_A 1302 SEHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCE----Y---KR---TPSGETVLRPT- 1370 (3245)
T ss_dssp HTTCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEE----E---EE---CTTSCEEEEES-
T ss_pred HCCCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcce----E---Ee---ccCCCcccCCC-
Confidence 4677899999999999998875444332222333333332 2233333332000 0 00 000 1222111
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEecchHHHHHHHHHHhhcCCCCCCCCCcc-hhHHHHHHHHHhhcCcccC
Q 010179 320 NMPVAAREASIYTGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPA-YLAARLASFYERAGKVKCL 398 (516)
Q Consensus 320 d~~~~~r~~a~~~a~tiAEyfrd~G~~Vlll~Dsltr~a~A~reis~~~ge~p~~~gyp~-~l~s~l~~l~ERag~~~~~ 398 (516)
..|+.+++++|++. +|..+-|.. ...+-|..++|.-|-...
T Consensus 1371 ----------------------~~Gk~~VlFiDDiN---------------mp~~D~yGtQ~~ielLrqlld~~g~yd~- 1412 (3245)
T 3vkg_A 1371 ----------------------QLGKWLVVFCDEIN---------------LPSTDKYGTQRVITFIRQMVEKGGFWRT- 1412 (3245)
T ss_dssp ----------------------STTCEEEEEETTTT---------------CCCCCTTSCCHHHHHHHHHHHHSEEEET-
T ss_pred ----------------------cCCceEEEEecccC---------------CCCccccccccHHHHHHHHHHcCCeEEC-
Confidence 14899999999997 566666655 456788999998775531
Q ss_pred CCCCCCC------ceeEEEEEecCCCCCCchhhHhhhccc
Q 010179 399 GGPERTG------SVTIVGAVSPPGGDFSDPVTSATLSIV 432 (516)
Q Consensus 399 ~~~~~~G------SIT~i~~v~~~~~D~~dpv~~~~~~i~ 432 (516)
..+ .+..++|.-+|++--..|++....+++
T Consensus 1413 ----~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F 1448 (3245)
T 3vkg_A 1413 ----SDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA 1448 (3245)
T ss_dssp ----TTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC
T ss_pred ----CCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc
Confidence 223 355677777775333455555544443
No 483
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=75.44 E-value=0.76 Score=45.14 Aligned_cols=21 Identities=29% Similarity=0.526 Sum_probs=19.3
Q ss_pred ccccCCCCCCCchHhHHHhhh
Q 010179 247 TCAIPGAFGCGKTVISQALSK 267 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~ 267 (516)
.++|.|++|+||||++..+++
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999985
No 484
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=75.43 E-value=1.2 Score=45.17 Aligned_cols=38 Identities=26% Similarity=0.268 Sum_probs=29.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhcc----CCCEEEEEeeCC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYS----NSDTVVYVGCGE 281 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~----~~d~~V~~~iGe 281 (516)
.|..++|.|++|+||||++.++.+.. ..|.+.+-..+.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~~~ 184 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISK 184 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEESSS
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEcCC
Confidence 47789999999999999999887653 346666655554
No 485
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=75.40 E-value=0.85 Score=46.41 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=21.4
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
.+.|.|++|+|||+|...||+..+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999998764
No 486
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=74.91 E-value=0.89 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.6
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-+++|+|++|+|||||+..|...
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred ceEEEECCCCCCHHHHHHHHhCC
Confidence 37899999999999999998765
No 487
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=74.69 E-value=0.89 Score=46.62 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=21.3
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
-++|.|++|+|||+|+..|+...+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 378999999999999999998754
No 488
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=74.54 E-value=0.53 Score=42.66 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|++++|.+|+|||+|+..+.+.
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6889999999999999987754
No 489
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=74.50 E-value=0.93 Score=44.09 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.5
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+.|.|++|+||||++..|++.
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 3678999999999999999874
No 490
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=74.44 E-value=0.8 Score=45.58 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.7
Q ss_pred CCccccCCCCCCCchHhHHHhhhc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
-++++|+|.+|+|||||+..+..+
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346999999999999999988764
No 491
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=74.34 E-value=0.71 Score=53.32 Aligned_cols=30 Identities=13% Similarity=0.083 Sum_probs=26.4
Q ss_pred ccccccccCCccccCCCCCCCchHhHHHhh
Q 010179 237 DALFPSVLGGTCAIPGAFGCGKTVISQALS 266 (516)
Q Consensus 237 D~l~pigkGqr~~I~g~~g~GKT~Ll~~ia 266 (516)
|.-+.+.+|+-++|.||.|+|||||+.+|+
T Consensus 665 dvsl~~~~g~i~~ItGPNGaGKSTlLr~i~ 694 (918)
T 3thx_B 665 NTDLSEDSERVMIITGPNMGGKSSYIKQVA 694 (918)
T ss_dssp EEEECTTSCCEEEEESCCCHHHHHHHHHHH
T ss_pred cccccCCCCeEEEEECCCCCchHHHHHHHH
Confidence 555667889999999999999999999876
No 492
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=74.19 E-value=2.4 Score=41.09 Aligned_cols=45 Identities=18% Similarity=0.071 Sum_probs=28.1
Q ss_pred ccccCCCCCCCchHhHHHhhhcc---CCCEEEEEeeCC-chhHHHHHHHh
Q 010179 247 TCAIPGAFGCGKTVISQALSKYS---NSDTVVYVGCGE-RGNEMAEVLMD 292 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~---~~d~~V~~~iGe-R~~Ev~e~~~~ 292 (516)
++.+.|.+|+||||++..++... ..+ ++++-+.. ...+...++..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~-V~v~d~D~q~~~~~~al~~g 56 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVR-VMAGVVETHGRAETEALLNG 56 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCC-EEEEECCCTTCHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCC-EEEEEeCCCCChhHHHHhcC
Confidence 36678999999999988777542 234 44455544 33444455543
No 493
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=74.09 E-value=0.98 Score=43.77 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.7
Q ss_pred ccccCCCCCCCchHhHHHhhhc
Q 010179 247 TCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+++++|.+|+|||+|+..+...
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998753
No 494
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=73.85 E-value=0.82 Score=43.27 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=22.9
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
||..+.|.|..|+||||++..|++...
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 355678999999999999999998763
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=73.79 E-value=0.81 Score=43.97 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=23.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhccC
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
++..+.|.|..|+||||++..|++...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445688999999999999999998763
No 496
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=73.34 E-value=0.49 Score=43.46 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.8
Q ss_pred CccccCCCCCCCchHhHHHhhhcc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKYS 269 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~~ 269 (516)
-+++++|.+|+|||+|+..+.++.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 368899999999999999988653
No 497
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.80 E-value=1.8 Score=44.16 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=21.1
Q ss_pred cCCccccCCCCCCCchHhHHHhhhc
Q 010179 244 LGGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 244 kGqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
.+..+.|+|++|+|||+++..++.+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH
Confidence 4567889999999999999977654
No 498
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=72.71 E-value=1.1 Score=44.66 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.0
Q ss_pred CccccCCCCCCCchHhHHHhhhc
Q 010179 246 GTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 246 qr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
+.++|+|.+|+|||||+..+..+
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35899999999999999988764
No 499
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=72.65 E-value=1.2 Score=46.09 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.4
Q ss_pred CCccccCCCCCCCchHhHHHhhhc
Q 010179 245 GGTCAIPGAFGCGKTVISQALSKY 268 (516)
Q Consensus 245 Gqr~~I~g~~g~GKT~Ll~~ia~~ 268 (516)
|-+++|+|.+++|||||+..+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 568999999999999999998864
No 500
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.50 E-value=1.1 Score=45.58 Aligned_cols=24 Identities=42% Similarity=0.372 Sum_probs=20.9
Q ss_pred ccccCCCCCCCchHhHHHhhhccC
Q 010179 247 TCAIPGAFGCGKTVISQALSKYSN 270 (516)
Q Consensus 247 r~~I~g~~g~GKT~Ll~~ia~~~~ 270 (516)
-+.|.||+|+|||+|+..+|+..+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 367899999999999999998754
Done!