Query 010181
Match_columns 516
No_of_seqs 177 out of 220
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 21:59:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010181.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010181hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3705 Glycoprotein 6-alpha-L 100.0 1.7E-82 3.6E-87 649.9 5.0 312 128-516 178-504 (580)
2 PF05830 NodZ: Nodulation prot 99.7 5.5E-17 1.2E-21 164.7 11.5 138 357-498 147-296 (321)
3 PF10250 O-FucT: GDP-fucose pr 99.1 2.8E-10 6.1E-15 116.6 7.5 116 375-502 194-344 (351)
4 PF01531 Glyco_transf_11: Glyc 98.4 1.2E-06 2.7E-11 89.5 11.3 98 375-498 162-267 (298)
5 PF03254 XG_FTase: Xyloglucan 98.1 7.6E-05 1.7E-09 81.1 16.1 113 377-498 301-437 (476)
6 KOG3849 GDP-fucose protein O-f 97.0 0.0019 4E-08 66.1 7.8 110 374-503 228-370 (386)
7 COG0859 RfaF ADP-heptose:LPS h 58.8 65 0.0014 33.6 9.7 95 376-499 175-272 (334)
8 PF02348 CTP_transf_3: Cytidyl 53.3 70 0.0015 30.4 8.2 51 381-434 4-60 (217)
9 PF03414 Glyco_transf_6: Glyco 50.7 17 0.00037 38.8 3.8 95 376-484 98-195 (337)
10 COG1083 NeuA CMP-N-acetylneura 46.9 68 0.0015 32.5 7.1 75 413-499 43-118 (228)
11 cd02515 Glyco_transf_6 Glycosy 46.3 40 0.00086 35.1 5.6 101 376-490 33-141 (271)
12 TIGR02195 heptsyl_trn_II lipop 45.8 1.7E+02 0.0038 29.9 10.3 97 375-498 173-271 (334)
13 TIGR02193 heptsyl_trn_I lipopo 45.7 1.8E+02 0.0039 29.5 10.3 93 375-497 178-273 (319)
14 PF01075 Glyco_transf_9: Glyco 44.5 85 0.0018 30.4 7.4 95 374-497 103-202 (247)
15 KOG1123 RNA polymerase II tran 39.1 8.6 0.00019 43.3 -0.5 43 378-420 535-596 (776)
16 cd03789 GT1_LPS_heptosyltransf 35.7 2.4E+02 0.0053 28.0 9.3 95 376-497 121-217 (279)
17 PRK10422 lipopolysaccharide co 35.6 2.8E+02 0.0062 28.8 10.1 98 374-498 181-282 (352)
18 COG1212 KdsB CMP-2-keto-3-deox 32.4 78 0.0017 32.4 5.0 43 412-455 41-83 (247)
19 KOG0673 Thymidylate synthase [ 32.0 1.7E+02 0.0037 30.2 7.3 104 374-485 110-228 (293)
20 PRK10916 ADP-heptose:LPS hepto 31.2 3.9E+02 0.0085 27.6 10.2 101 375-498 179-281 (348)
21 COG1922 WecG Teichoic acid bio 31.0 2.5E+02 0.0055 29.0 8.5 73 400-487 93-171 (253)
22 cd06533 Glyco_transf_WecG_TagA 30.3 2.1E+02 0.0046 27.0 7.5 72 414-500 46-123 (171)
23 TIGR02201 heptsyl_trn_III lipo 29.8 3.8E+02 0.0082 27.6 9.8 96 375-498 180-280 (344)
24 PF03808 Glyco_tran_WecB: Glyc 29.8 2.4E+02 0.0052 26.7 7.7 72 415-501 49-126 (172)
25 PRK10964 ADP-heptose:LPS hepto 23.8 5.8E+02 0.013 26.0 9.8 93 375-498 177-273 (322)
26 PF10206 WRW: Mitochondrial F1 22.9 1.1E+02 0.0023 27.6 3.7 64 127-202 34-97 (104)
No 1
>KOG3705 consensus Glycoprotein 6-alpha-L-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-82 Score=649.93 Aligned_cols=312 Identities=21% Similarity=0.328 Sum_probs=271.6
Q ss_pred cCCCCCCcccCCccCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeecCCCCcchhHHHHHHHHHHHHHHhcCcEEEEe
Q 010181 128 SEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKRVLVTN 207 (516)
Q Consensus 128 ~~~~~~~w~~g~d~e~~pLt~~vQr~I~~~QnP~dCs~A~~K~Lvc~~~~~cGfGcg~H~~~~C~~l~~A~~t~RtLIld 207 (516)
..+|+..|+ .+|...||++|||||.++|||+||++| |+|||+++++|||||+.||++||+| +||+|.||||++
T Consensus 178 q~dG~e~wR---~Kea~dlt~lvqrri~~LQNPkdCs~A--kkLVCnlnKgCGyGCQLHHVvYCfi--~AyaTqRtliLk 250 (580)
T KOG3705|consen 178 QLDGSEEWR---FKEATDLTQLVQRRIEKLQNPKDCSEA--KKLVCNLNKGCGYGCQLHHVVYCFI--TAYATQRTLILK 250 (580)
T ss_pred hccCcHHHH---HhHHhHHHHHHHHHHHHhcChHhhHHH--hhheeeccCCcccccceeeeeEeee--eeeecceEEEEe
Confidence 568899999 489999999999999999999999999 9999999999999999999999999 999999999999
Q ss_pred CCCCcCCCCCCCCCCCCCccccccCCcccccccccc----cccchhhhccCceee--ccCCCCcccccCCCCCCCCCCCc
Q 010181 208 YYNRADHDGCKGSSRSSWSCYFLPETSQECRDRAFE----LMDNKEALEKGIITT--KDNYSSKQIWAGRAPRVWGDPWS 281 (516)
Q Consensus 208 ~~~~~~~~Gc~~~~~~~Wsc~F~p~sS~~C~~~a~~----~~~~~~~~~~~iv~~--~~~~~~~~~~~g~~P~~~~~P~~ 281 (516)
+.+|.|+.| ||+.+|.|. |+.|.++++. |..... ....||.+ .|++.++|+|+ |.++|++
T Consensus 251 s~gWrY~~g-------GWe~VF~pv-S~~c~D~~~~nT~~wpg~~~-~n~qVv~LpIvDSL~prPpyL-----PlAVPEd 316 (580)
T KOG3705|consen 251 SDGWRYSSG-------GWESVFKPV-SKCCFDEAVGNTEAWPGAEP-SNAQVVSLPIVDSLIPRPPYL-----PLAVPED 316 (580)
T ss_pred cCCceecCC-------Chhhhhhhh-hhcccccccccccCCCCCCC-CCceEEEeecccccCCCCCCc-----cccCcHH
Confidence 999988765 799999985 7899988653 332211 12456666 78899999999 9999999
Q ss_pred ccccccccccchhhhcccchhhHHHHHHHHHhhcCChHHHhhHHHHHhhhhhhHHHHHHHHhCCCCCCcchhcccCCccc
Q 010181 282 YLQPTTEINGTLIAYHRKMDRRWWRAQAVRYLMRFLTEYTCGLLNVARHAAFGKEAAKMVLTGLPREWPNVEVANNSGSD 361 (516)
Q Consensus 282 ~~~~~~~~hg~p~~~~~~~~~~WW~gQ~~~YLmRp~~~~l~~Lln~~R~~afg~~aa~~~~~~l~~~w~~~~~~~~~~~~ 361 (516)
++++++++||+| .+||+||+++||||||+.+. +.|.+ ..+.
T Consensus 317 La~rL~rlHgdP--------~vwwVgqFikYL~Rpqp~t~-~~l~~------------------------------a~k~ 357 (580)
T KOG3705|consen 317 LAERLTRLHGDP--------PVWWVGQFIKYLMRPQPATQ-EKLDK------------------------------ALKS 357 (580)
T ss_pred HHHHHHHhcCCC--------ceeeHHHHHHHHhCCChhhH-HHHHH------------------------------HHHh
Confidence 999999999999 99999999999999999544 33322 1123
Q ss_pred hhhhhhccCCCCCCCCeEEEEEcCCCcc-ccccccCHHHHHHHHHHHHH-----hCCCCcEEEEeCCChHHHHHhh-cCC
Q 010181 362 IEDFVWSSHRPWIPRPMLSMHVRMGDKA-CEMKVVEFEKYMLLADRIRK-----HFPHLNSIWLSTEMQEVVDKSK-LYP 434 (516)
Q Consensus 362 i~~~v~s~~kp~~~~PiVGVHIRRgDK~-~Ea~~~~~eeYm~~Ve~~~~-----~~p~~r~IfLATDD~~Vi~eak-~Yp 434 (516)
|+ +.+||||||||||||+ +||++|+++|||.+|+.+++ ..|..||||||||||+|+.|+| +||
T Consensus 358 lg----------~~~PivGvhvRRTDKVGTEAAfH~~eEYM~~vE~~f~~le~rg~~~~rRiflAsDDp~vv~EAk~kYP 427 (580)
T KOG3705|consen 358 LG----------LDKPIVGVHVRRTDKVGTEAAFHALEEYMEWVEIWFKVLEKRGKPLERRIFLASDDPTVVPEAKNKYP 427 (580)
T ss_pred CC----------CCCceeeEEEEecccccchhhhhhHHHHHHHHHHHHHHHHHhCCchhheEEEecCCchhchHhhccCC
Confidence 44 7899999999999998 69999999999999998765 3567899999999999999999 999
Q ss_pred CceEEeec-eecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhccC-CcccceeeccC
Q 010181 435 HWNFYFTN-VTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTGG-KVMSGYLSVNK 512 (516)
Q Consensus 435 ~y~f~~t~-I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrqt~~-ka~~~F~Svd~ 512 (516)
+|.|+.++ |.+. +....|+++++++++++||++||.+||+||||||+|||++||||||.| ||.+.|+||||
T Consensus 428 nYe~igd~eia~~-------A~l~nRYTd~sL~GvIlDIh~LS~~d~LVCTFSSQVCRvaYEimQt~~pDa~~~FhSLDD 500 (580)
T KOG3705|consen 428 NYEVIGDTEIAKT-------AQLNNRYTDASLMGVILDIHILSKVDYLVCTFSSQVCRVAYEIMQTSGPDAGSKFHSLDD 500 (580)
T ss_pred CcEEeccHHHHHH-------hhccccchhhhhhheeeeeeeecccceEEEechHHHHHHHHHHHhccCCCcccccccccc
Confidence 99996444 3332 333455688999999999999999999999999999999999999998 99999999999
Q ss_pred CCCC
Q 010181 513 DRFW 516 (516)
Q Consensus 513 ~~~~ 516 (516)
|||.
T Consensus 501 IYYf 504 (580)
T KOG3705|consen 501 IYYF 504 (580)
T ss_pred eeee
Confidence 9984
No 2
>PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation. NodZ is required for the addition of a 2-O-methylfucose residue to the terminal reducing N-acetylglucosamine of the nodulation signal. This substitution is essential for the biological activity of this molecule. Mutations in nodZ result in defective nodulation. nodZ represents a unique nodulation gene that is not under the control of NodD and yet is essential for the synthesis of an active nodulation signal [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3SIX_A 2HLH_A 2HHC_A 3SIW_A 2OCX_A.
Probab=99.70 E-value=5.5e-17 Score=164.70 Aligned_cols=138 Identities=14% Similarity=0.139 Sum_probs=80.9
Q ss_pred CCccchhhhhhccCCCC-CCCCeEEEEEcCC---CccccccccCHH-HHHHHHHHHHH----hCCC-CcEEEEeCCChHH
Q 010181 357 NSGSDIEDFVWSSHRPW-IPRPMLSMHVRMG---DKACEMKVVEFE-KYMLLADRIRK----HFPH-LNSIWLSTEMQEV 426 (516)
Q Consensus 357 ~~~~~i~~~v~s~~kp~-~~~PiVGVHIRRg---DK~~Ea~~~~~e-eYm~~Ve~~~~----~~p~-~r~IfLATDD~~V 426 (516)
+.+++|++.|+..+... -+.++||||||+| |...++...... .+|.+|....+ +.+. ..+||||||+++|
T Consensus 147 kpR~eIqarID~iy~ehf~g~~~IGVHVRhGngeD~~~h~~~~~D~e~~L~~V~~ai~~ak~~~~~k~~~IFLATDSaeV 226 (321)
T PF05830_consen 147 KPRPEIQARIDAIYREHFAGYSVIGVHVRHGNGEDIMDHAPYWADEERALRQVCTAIDKAKALAPPKPVRIFLATDSAEV 226 (321)
T ss_dssp -B-HHHHHHHHHHHHHHTTTSEEEEEEE---------------HHHHHHHHHHHHHHHHHHTS--SS-EEEEEEES-HHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEeccCCcchhccCccccCchHHHHHHHHHHHHHHhccCCCCeeEEEecCcHHH
Confidence 45678888888877755 5677999999999 556666655544 58888876543 2333 3489999999999
Q ss_pred HHHhh-cCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEE-cCCCcHHHHHHHHHh
Q 010181 427 VDKSK-LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIG-ALGSTWCFLIDGMRN 498 (516)
Q Consensus 427 i~eak-~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVG-T~SSnv~RLi~ELrq 498 (516)
+++++ ++|+... .++-.+..+.-..... .. ..++..++|+|+++||+||++|. |.+|.+||++.-++-
T Consensus 227 id~fr~~FPdiit-i~k~F~~~~~g~Lhs~--~~-g~~gg~~ALIDM~LLSrCD~LIr~~ptS~Fsr~asl~~p 296 (321)
T PF05830_consen 227 IDQFRKKFPDIIT-IPKQFPASQAGPLHSA--AV-GIEGGESALIDMYLLSRCDYLIRFPPTSAFSRYASLFVP 296 (321)
T ss_dssp HHHHHHHSTTEE-----------------H--HH-HHHHHHHHHHHHHHHTTSSEEEEESTT-GGGHHHHHH-S
T ss_pred HHHHHHHCCCeEE-cccccCCCCCCcCccc--cc-ccchHHHHHHHHHHHHhCCeEEEcCCCchhhhHHHHhcc
Confidence 99999 9999443 2221222221111111 11 23466789999999999999995 999999999987763
No 3
>PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats. Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A.
Probab=99.05 E-value=2.8e-10 Score=116.60 Aligned_cols=116 Identities=22% Similarity=0.258 Sum_probs=60.7
Q ss_pred CCCeEEEEEcCC-Ccc--cc---------------------------ccccCHHHHHHHHHHHHHhCCCCcEEEEeCCCh
Q 010181 375 PRPMLSMHVRMG-DKA--CE---------------------------MKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQ 424 (516)
Q Consensus 375 ~~PiVGVHIRRg-DK~--~E---------------------------a~~~~~eeYm~~Ve~~~~~~p~~r~IfLATDD~ 424 (516)
..|+||||+|+| |=. ++ +..-..++.+..+.+... ..+.+.||||||+.
T Consensus 194 ~~~yiavHlR~~~D~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~-~~~~~~vYiAtd~~ 272 (351)
T PF10250_consen 194 GGPYIAVHLRRGKDWFSACEFKGERHLLASPRCWGKKSINPEKKRRNGCCPSTPQEAKQILRALG-KNNTTVVYIATDEI 272 (351)
T ss_dssp -SSEEEEEE--SHHHHHHHCT-T----TTTHHHH-GGGTT-----HHHHS--HHHHHHHHHHHHH-HHT-SEEEEEESS-
T ss_pred cCceEEEeecccCchHhhcccCCchHHHHHhHhhccccccchhhhhcCCCCChHHHHHHHHHHhc-cCCCCEEEEecCcc
Confidence 689999999999 751 11 112223344444443332 24557999999993
Q ss_pred ----HHHHHhh-cCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhc
Q 010181 425 ----EVVDKSK-LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNT 499 (516)
Q Consensus 425 ----~Vi~eak-~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrqt 499 (516)
..++.++ .+|+...... +.. ..+.. ...+-..+++|.++++++|+||||..|+|+..|.+.|..
T Consensus 273 ~~~~~~l~~l~~~~~~~~~~~~-~~~------~~~~~----~~~~~~~a~vD~~i~~~s~~Figt~~Stfs~~i~~~R~~ 341 (351)
T PF10250_consen 273 YGGERRLDPLKNMFPNVVTKDD-LLS------HEELE----PLNDDQLAMVDQEICSRSDVFIGTCGSTFSSNIARERHY 341 (351)
T ss_dssp ----------HHHHHHHHGGGT---E------E--S---------S--HHHHHHHHHHSSEEEE-TT-HHHHHHHHHHHH
T ss_pred cccchhHHHHHHHhhhhEeccc-cCC------HHHhh----hccccchhHHHHHHHhcCCEEEecCcchhHHHhhcccCc
Confidence 2334444 3443110000 000 00000 011134579999999999999999999999999999999
Q ss_pred cCC
Q 010181 500 GGK 502 (516)
Q Consensus 500 ~~k 502 (516)
.|+
T Consensus 342 ~g~ 344 (351)
T PF10250_consen 342 RGK 344 (351)
T ss_dssp SSS
T ss_pred CCC
Confidence 883
No 4
>PF01531 Glyco_transf_11: Glycosyl transferase family 11; InterPro: IPR002516 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 11 GT11 from CAZY comprises enzymes with only one known activity; galactoside 2-L-fucosyltransferase (2.4.1.69 from EC). Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Galactoside 2-L-fucosyltransferase 1 (2.4.1.69 from EC) and Galactoside 2-L-fucosyltransferase 2 (2.4.1.69 from EC) belong to the Hh blood group system and are associated with H/h and Se/se antigens.; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=98.45 E-value=1.2e-06 Score=89.51 Aligned_cols=98 Identities=18% Similarity=0.288 Sum_probs=67.1
Q ss_pred CCCeEEEEEcCCCcccccc-----ccCHHHHH-HHHHHHHHhCCCCcEEEEeCCChHHHHHh-hc-CCCceEEeeceecc
Q 010181 375 PRPMLSMHVRMGDKACEMK-----VVEFEKYM-LLADRIRKHFPHLNSIWLSTEMQEVVDKS-KL-YPHWNFYFTNVTRQ 446 (516)
Q Consensus 375 ~~PiVGVHIRRgDK~~Ea~-----~~~~eeYm-~~Ve~~~~~~p~~r~IfLATDD~~Vi~ea-k~-Yp~y~f~~t~I~r~ 446 (516)
....|||||||||.+.... ...-.+|+ ++++.+..+.++. .+||.|||++-.++. .. .+...| +
T Consensus 162 ~~~~V~VHIRRGDy~~~~~~~~~~~~~~~~Yy~~Ai~~i~~~~~~~-~f~ifSDD~~w~k~~l~~~~~~~~~----~--- 233 (298)
T PF01531_consen 162 NSNSVCVHIRRGDYVSNGNHNWKHGICDKDYYKKAIEYIREKVKNP-KFFIFSDDIEWCKENLKFSNGDVYF----S--- 233 (298)
T ss_pred CCCeEEEEEEchhccccccccccCCCCCHHHHHHHHHHHHHhCCCC-EEEEEcCCHHHHHHHHhhcCCcEEE----E---
Confidence 4578999999999875322 12334555 5555555555554 799999999877653 32 222111 0
Q ss_pred cCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 447 VGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 447 ~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
++ .....|+++|+.||++|.| .|++|--+.=|-.
T Consensus 234 -~~----------------~~~~~Dl~lms~C~~~Iis-nSTFswW~a~L~~ 267 (298)
T PF01531_consen 234 -GN----------------NSPYEDLYLMSQCKHFIIS-NSTFSWWAAYLSK 267 (298)
T ss_pred -CC----------------CCHHHHHHHHHhCCcEEEC-CChHHHHHHHHCC
Confidence 11 3467999999999999999 7999999888855
No 5
>PF03254 XG_FTase: Xyloglucan fucosyltransferase; InterPro: IPR004938 Plant cell walls are crucial for development, signal transduction, and disease resistance in plants. Cell walls are made of cellulose, hemicelluloses, and pectins. Xyloglucan (XG), the principal load-bearing hemicellulose of dicotyledonous plants, has a terminal fucosyl residue. This fucosyltransferase adds this residue []. ; GO: 0008107 galactoside 2-alpha-L-fucosyltransferase activity, 0042546 cell wall biogenesis, 0016020 membrane
Probab=98.11 E-value=7.6e-05 Score=81.15 Aligned_cols=113 Identities=14% Similarity=0.212 Sum_probs=72.1
Q ss_pred CeEEEEEcCCCccccccccCHHHHHHHHHHHHH---hCC-----------------CCcEEEEeCCChHHHHHhh-cCCC
Q 010181 377 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRK---HFP-----------------HLNSIWLSTEMQEVVDKSK-LYPH 435 (516)
Q Consensus 377 PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~---~~p-----------------~~r~IfLATDD~~Vi~eak-~Yp~ 435 (516)
-.|||+||.-+...+ +++.+++.|-.=.. ..| ..+.|+|++.-+.--++++ .|-+
T Consensus 301 ~riGIQIRvf~~~~~----~~~~~~dqIl~C~~~e~LLP~v~~~~~~~~~~~~~~~~~kaVlVtSL~~~yye~lr~~Y~~ 376 (476)
T PF03254_consen 301 ERIGIQIRVFDPKPG----PFQHVLDQILSCTQQEKLLPEVVDTQEPAASSSSKSQKSKAVLVTSLYSEYYEKLRNMYWE 376 (476)
T ss_pred ceeEEEEEecCCCCC----cchhHHHHHHHHHhhcccCCCccccccccccccCCCCceEEEEEEeCCHHHHHHHHHHHhc
Confidence 479999999886433 44556665553111 011 2358999999999999999 7743
Q ss_pred ceEEeec---eecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 436 WNFYFTN---VTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 436 y~f~~t~---I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
.----.. |.. .+...+... +...--..+++||+|||-||.+|-|--|++|.++..|--
T Consensus 377 ~~t~tGe~V~V~Q----pShe~~Q~~-~~~~h~~kAlaEmyLLS~sD~LVTS~~STFGYVAqgLgG 437 (476)
T PF03254_consen 377 HPTVTGEVVGVHQ----PSHEEYQQF-GDNMHNQKALAEMYLLSLSDVLVTSGWSTFGYVAQGLGG 437 (476)
T ss_pred CCCcCCcEEEEEC----CCCcccccc-cccchHHHHHHHHHHHHhccceEecCCCCchhHHHhhcC
Confidence 2110000 111 222222211 111222568999999999999999999999999988754
No 6
>KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0019 Score=66.10 Aligned_cols=110 Identities=17% Similarity=0.342 Sum_probs=76.8
Q ss_pred CCCCeEEEEEcCCCc---ccccc-----------------------------ccCHHHHHHHHHHHHHhCCCCcEEEEeC
Q 010181 374 IPRPMLSMHVRMGDK---ACEMK-----------------------------VVEFEKYMLLADRIRKHFPHLNSIWLST 421 (516)
Q Consensus 374 ~~~PiVGVHIRRgDK---~~Ea~-----------------------------~~~~eeYm~~Ve~~~~~~p~~r~IfLAT 421 (516)
+++|.||||.|.|-- ++|+- .-+.++-+..+.+......+.+.|||||
T Consensus 228 L~rpfvgiHLRng~DWvraCehikd~~~~hlfASpQClGy~~~~gaLt~e~C~Psk~~I~rqik~~v~si~dakSVfVAs 307 (386)
T KOG3849|consen 228 LARPFVGIHLRNGADWVRACEHIKDTTNRHLFASPQCLGYGHHLGALTKEICSPSKQQILRQIKEKVGSIGDAKSVFVAS 307 (386)
T ss_pred cCcceeEEEeecCchHHHHHHHhcccCCCccccChhhccccccccccchhhhCccHHHHHHHHHHHHhhhcccceEEEec
Confidence 688999999998753 23331 1122344445555545555778999999
Q ss_pred CChHHHHHhh-cCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhcc
Q 010181 422 EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNTG 500 (516)
Q Consensus 422 DD~~Vi~eak-~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrqt~ 500 (516)
|....|+|+. .-..|.+- +.++.. ...-+||.+|-.+|.|||.--|+++-++-.=|...
T Consensus 308 Ds~hmi~Eln~aL~~~~i~---vh~l~p-----------------dd~y~dLaIlGqadhFiGNCvSsfsafvKRERD~~ 367 (386)
T KOG3849|consen 308 DSDHMIDELNEALKPYEIE---VHRLEP-----------------DDMYTDLAILGQADHFIGNCVSSFSAFVKRERDHA 367 (386)
T ss_pred cchhhhHHHHHhhccccee---EEecCc-----------------ccchhhhhhhcccchhhhhhHHHHHHHHhhhhccc
Confidence 9999999997 33333431 333311 22469999999999999999999999999888877
Q ss_pred CCc
Q 010181 501 GKV 503 (516)
Q Consensus 501 ~ka 503 (516)
|.-
T Consensus 368 GrP 370 (386)
T KOG3849|consen 368 GRP 370 (386)
T ss_pred CCc
Confidence 743
No 7
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=58.81 E-value=65 Score=33.55 Aligned_cols=95 Identities=17% Similarity=0.179 Sum_probs=63.6
Q ss_pred CCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC--CChHHHHHhh-cCCCceEEeeceecccCCchh
Q 010181 376 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST--EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 452 (516)
Q Consensus 376 ~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLAT--DD~~Vi~eak-~Yp~y~f~~t~I~r~~g~~s~ 452 (516)
+|+|++|.= --...++.-+.+.|-+.++.+.+.. -.|+|.. +|.++.+++. .+++-.- ..|..++
T Consensus 175 ~~~i~i~pg--~s~~~~K~wp~e~~~~l~~~l~~~~---~~Vvl~g~~~e~e~~~~i~~~~~~~~~-------l~~k~sL 242 (334)
T COG0859 175 RPYIVINPG--ASRGSAKRWPLEHYAELAELLIAKG---YQVVLFGGPDEEERAEEIAKGLPNAVI-------LAGKTSL 242 (334)
T ss_pred CCeEEEecc--ccccccCCCCHHHHHHHHHHHHHCC---CEEEEecChHHHHHHHHHHHhcCCccc-------cCCCCCH
Confidence 699999973 1112456688899999999988877 3566644 7778888877 5665220 1122222
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHhc
Q 010181 453 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRNT 499 (516)
Q Consensus 453 ~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrqt 499 (516)
.. =+.+++.||++||. .|....|+.-+---
T Consensus 243 -------------~e---~~~li~~a~l~I~~-DSg~~HlAaA~~~P 272 (334)
T COG0859 243 -------------EE---LAALIAGADLVIGN-DSGPMHLAAALGTP 272 (334)
T ss_pred -------------HH---HHHHHhcCCEEEcc-CChHHHHHHHcCCC
Confidence 11 13466899998887 88999998877543
No 8
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=53.32 E-value=70 Score=30.39 Aligned_cols=51 Identities=22% Similarity=0.206 Sum_probs=31.9
Q ss_pred EEEcCCCcccccc------ccCHHHHHHHHHHHHHhCCCCcEEEEeCCChHHHHHhhcCC
Q 010181 381 MHVRMGDKACEMK------VVEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYP 434 (516)
Q Consensus 381 VHIRRgDK~~Ea~------~~~~eeYm~~Ve~~~~~~p~~r~IfLATDD~~Vi~eak~Yp 434 (516)
|..|.|=|..--+ -.|+=+| +-+-..+-..+..|+|||||+.+.+.+++|.
T Consensus 4 IpAR~gS~rlp~Knl~~l~gkpLi~~---~i~~a~~s~~~d~IvVaTd~~~i~~~~~~~g 60 (217)
T PF02348_consen 4 IPARGGSKRLPGKNLKPLGGKPLIEY---VIERAKQSKLIDEIVVATDDEEIDDIAEEYG 60 (217)
T ss_dssp EEE-SSSSSSTTGGGSEETTEEHHHH---HHHHHHHTTTTSEEEEEESSHHHHHHHHHTT
T ss_pred EecCCCCCCCCcchhhHhCCccHHHH---HHHHHHhCCCCCeEEEeCCCHHHHHHHHHcC
Confidence 5567776654332 1222233 2233344455678999999999999999887
No 9
>PF03414 Glyco_transf_6: Glycosyltransferase family 6; InterPro: IPR005076 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 6 GT6 from CAZY comprises enzymes with three known activities; alpha-1,3-galactosyltransferase (2.4.1.151 from EC); alpha-1,3 N-acetylgalactosaminyltransferase (2.4.1.40 from EC); alpha-galactosyltransferase (2.4.1.37 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane; PDB: 2Y7A_B 2O1G_A 1R82_A 2RJ1_A 3IOJ_B 2RJ4_A 3I0C_A 3SX8_A 1ZJ1_A 3I0E_A ....
Probab=50.65 E-value=17 Score=38.79 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCC-cEEEEeCCChHHHHHhhcCCCceEEeeceecccC--Cchh
Q 010181 376 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTM 452 (516)
Q Consensus 376 ~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~-r~IfLATDD~~Vi~eak~Yp~y~f~~t~I~r~~g--~~s~ 452 (516)
.-+||+=|=-+-|-.. -++.+++-|++++. ++. ...||-||+|+.+...+.-|..++..-.|....+ ..++
T Consensus 98 n~tIGL~vfA~GkY~~----fl~~Fl~SAek~Fm--~g~~V~YYVFTD~p~~vP~i~l~~~r~~~V~~v~~~~~Wqd~sm 171 (337)
T PF03414_consen 98 NITIGLTVFATGKYIV----FLKDFLESAEKHFM--VGHRVIYYVFTDQPSKVPRIELGPGRRLKVFEVQEEKRWQDISM 171 (337)
T ss_dssp T-EEEEEEEE-CCHHH----HHHHHHHHHHHHBS--TTSEEEEEEEES-GGGS------TTEEEEEEE-SGGSSHHHHHH
T ss_pred CceEEEEEEecccHHH----HHHHHHHhHHHhcc--CCcEEEEEEEeCchhhCCccccCCCceeEEEEecccCCCccchh
Confidence 4578877633222211 23444555554432 333 3799999999988877655666664333332222 2233
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEc
Q 010181 453 AIYEASLGRETSTNYPLVNFLMATDSDFFIGA 484 (516)
Q Consensus 453 ~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT 484 (516)
... .+..-.+.-.++.++||++|-
T Consensus 172 ~Rm--------~~i~~~i~~~~~~EvDYLFc~ 195 (337)
T PF03414_consen 172 MRM--------EMISEHIEQHIQHEVDYLFCM 195 (337)
T ss_dssp HHH--------HHHHHHHHHCHHHH-SEEEEE
T ss_pred HHH--------HHHHHHHHHHHhhcCCEEEEE
Confidence 221 111122344678999999996
No 10
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=46.92 E-value=68 Score=32.54 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=48.7
Q ss_pred CCcEEEEeCCChHHHHHhhcCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHHHHh-cCCceEEcCCCcHHH
Q 010181 413 HLNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMAT-DSDFFIGALGSTWCF 491 (516)
Q Consensus 413 ~~r~IfLATDD~~Vi~eak~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLs-ecDyfVGT~SSnv~R 491 (516)
-...|+|+||++++++++++|.--.| +.|... .+. + +.+++..++.-+..+- ..|.+++...++.=|
T Consensus 43 ~fd~VviSsDs~~Il~~A~~ygak~~----~~Rp~~---LA~---D--~ast~~~~lh~le~~~~~~~~~~lLq~TsPLl 110 (228)
T COG1083 43 LFDKVVISSDSEEILEEAKKYGAKVF----LKRPKE---LAS---D--RASTIDAALHALESFNIDEDTLILLQPTSPLL 110 (228)
T ss_pred ccceEEEcCCcHHHHHHHHHhCcccc----ccCChh---hcc---C--chhHHHHHHHHHHHhccccCeeEEeccCcccc
Confidence 35789999999999999998865444 455421 111 0 2223334444444433 345588888888888
Q ss_pred HHHHHHhc
Q 010181 492 LIDGMRNT 499 (516)
Q Consensus 492 Li~ELrqt 499 (516)
-...|+++
T Consensus 111 ~~~~ik~A 118 (228)
T COG1083 111 TSLHIKEA 118 (228)
T ss_pred chhHHHHH
Confidence 88888887
No 11
>cd02515 Glyco_transf_6 Glycosyltransferase family 6 comprises enzymes responsible for the production of the human ABO blood group antigens. Glycosyltransferase family 6, GT_6, comprises enzymes with three known activities: alpha-1,3-galactosyltransferase, alpha-1,3 N-acetylgalactosaminyltransferase, and alpha-galactosyltransferase. UDP-galactose:beta-galactosyl alpha-1,3-galactosyltransferase (alpha3GT) catalyzes the transfer of galactose from UDP-alpha-d-galactose into an alpha-1,3 linkage with beta-galactosyl groups in glycoconjugates. The enzyme exists in most mammalian species but is absent from humans, apes, and old world monkeys as a result of the mutational inactivation of the gene. The alpha-1,3 N-acetylgalactosaminyltransferase and alpha-galactosyltransferase are responsible for the production of the human ABO blood group antigens. A N-acetylgalactosaminyltransferases use a UDP-GalNAc donor to convert the H-antigen acceptor to the A antigen, whereas a galactosyltransferase use
Probab=46.34 E-value=40 Score=35.08 Aligned_cols=101 Identities=11% Similarity=0.119 Sum_probs=53.9
Q ss_pred CCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCC-cEEEEeCCChHHHHHhhcCCCceEEeeceecccC--Cchh
Q 010181 376 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTM 452 (516)
Q Consensus 376 ~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~-r~IfLATDD~~Vi~eak~Yp~y~f~~t~I~r~~g--~~s~ 452 (516)
.-.||+=+=-+-|-+ .-++.+++-|++++. ++. +.-||-||++..+.+.+.=|..++....|....+ ..++
T Consensus 33 n~tIgl~vfatGkY~----~f~~~F~~SAEk~Fm--~g~~v~YyVFTD~~~~~p~v~lg~~r~~~V~~v~~~~~W~~~sl 106 (271)
T cd02515 33 NITIGLTVFAVGKYT----EFLERFLESAEKHFM--VGYRVIYYIFTDKPAAVPEVELGPGRRLTVLKIAEESRWQDISM 106 (271)
T ss_pred CCEEEEEEEEeccHH----HHHHHHHHHHHHhcc--CCCeeEEEEEeCCcccCcccccCCCceeEEEEeccccCCcHHHH
Confidence 346777663322221 123445555554433 332 3899999999988876644555554333322222 2233
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEc-----CCCcHH
Q 010181 453 AIYEASLGRETSTNYPLVNFLMATDSDFFIGA-----LGSTWC 490 (516)
Q Consensus 453 ~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT-----~SSnv~ 490 (516)
.+.+ +..-..+=.++.++||+.|- |.+.||
T Consensus 107 ~Rm~--------~~~~~~~~~~~~e~DYlF~~dvd~~F~~~ig 141 (271)
T cd02515 107 RRMK--------TLADHIADRIGHEVDYLFCMDVDMVFQGPFG 141 (271)
T ss_pred HHHH--------HHHHHHHHhhcccCCEEEEeeCCceEeecCC
Confidence 2221 11123344578899999986 666666
No 12
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=45.82 E-value=1.7e+02 Score=29.87 Aligned_cols=97 Identities=12% Similarity=0.158 Sum_probs=58.4
Q ss_pred CCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-CChHHHHHhh-cCCCceEEeeceecccCCchh
Q 010181 375 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 452 (516)
Q Consensus 375 ~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLAT-DD~~Vi~eak-~Yp~y~f~~t~I~r~~g~~s~ 452 (516)
.+|+|+||. .+. ....+.-+.+.|.+.++.+... +.+-|.+.+ +|.+..+++. ..++ . +....|..+
T Consensus 173 ~~~~i~i~p-ga~-~~~~K~Wp~e~~~~li~~l~~~--~~~ivl~G~~~e~~~~~~i~~~~~~-~-----~~~l~g~~s- 241 (334)
T TIGR02195 173 ERPIIAFCP-GAE-FGPAKRWPHEHYAELAKRLIDQ--GYQVVLFGSAKDHPAGNEIEALLPG-E-----LRNLAGETS- 241 (334)
T ss_pred CCCEEEEcC-CCC-CCccCCCCHHHHHHHHHHHHHC--CCEEEEEEChhhHHHHHHHHHhCCc-c-----cccCCCCCC-
Confidence 468999999 332 2256778889999999887543 344455555 3334444544 2222 1 101112222
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 453 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 453 ~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
+--=.-+++.||.+||. .|..-.|+.-+.-
T Consensus 242 ---------------L~el~ali~~a~l~I~~-DSGp~HlAaA~~~ 271 (334)
T TIGR02195 242 ---------------LDEAVDLIALAKAVVTN-DSGLMHVAAALNR 271 (334)
T ss_pred ---------------HHHHHHHHHhCCEEEee-CCHHHHHHHHcCC
Confidence 22234678999999998 8888888886654
No 13
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=45.71 E-value=1.8e+02 Score=29.51 Aligned_cols=93 Identities=14% Similarity=0.156 Sum_probs=58.0
Q ss_pred CCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-C-ChHHHHHhh-cCCCceEEeeceecccCCch
Q 010181 375 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-E-MQEVVDKSK-LYPHWNFYFTNVTRQVGNMT 451 (516)
Q Consensus 375 ~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLAT-D-D~~Vi~eak-~Yp~y~f~~t~I~r~~g~~s 451 (516)
+.|+|++|.-.+. ..+.-+.+.|.+.++.+.+. +.+-|++.+ + |....+++. ..++-. + .|..+
T Consensus 178 ~~~~i~i~~gas~---~~K~wp~e~~~~l~~~l~~~--~~~~vl~~g~~~e~~~~~~i~~~~~~~~-----l---~g~~s 244 (319)
T TIGR02193 178 PAPYAVLLHATSR---DDKTWPEERWRELARLLLAR--GLQIVLPWGNDAEKQRAERIAEALPGAV-----V---LPKMS 244 (319)
T ss_pred CCCEEEEEeCCCc---ccCCCCHHHHHHHHHHHHHC--CCeEEEeCCCHHHHHHHHHHHhhCCCCe-----e---cCCCC
Confidence 6799999995542 56778999999999888643 443344423 3 223444444 233311 1 12222
Q ss_pred hHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 010181 452 MAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 497 (516)
Q Consensus 452 ~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELr 497 (516)
+ .-=+.+++.||+|||. .|....|+.-+.
T Consensus 245 L----------------~el~ali~~a~l~I~~-DSgp~HlAaa~g 273 (319)
T TIGR02193 245 L----------------AEVAALLAGADAVVGV-DTGLTHLAAALD 273 (319)
T ss_pred H----------------HHHHHHHHcCCEEEeC-CChHHHHHHHcC
Confidence 2 2235789999999998 888888887653
No 14
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=44.51 E-value=85 Score=30.39 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=52.5
Q ss_pred CCCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCCh----HHHHHhh-cCCCceEEeeceecccC
Q 010181 374 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQ----EVVDKSK-LYPHWNFYFTNVTRQVG 448 (516)
Q Consensus 374 ~~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLATDD~----~Vi~eak-~Yp~y~f~~t~I~r~~g 448 (516)
.+.|+|+||+=.+. +.+..+.+.|.++++++.+.. . .|+|..... +..+++. ..++-.+. + .|
T Consensus 103 ~~~~~i~i~~~a~~---~~k~wp~e~~~~l~~~l~~~~--~-~vvl~g~~~~~~~~~~~~~~~~~~~~~~~---~---~~ 170 (247)
T PF01075_consen 103 KDKPYIGINPGASW---PSKRWPAEKWAELIERLKERG--Y-RVVLLGGPEEQEKEIADQIAAGLQNPVIN---L---AG 170 (247)
T ss_dssp TTSSEEEEE---SS---GGGS--HHHHHHHHHHHCCCT----EEEE--SSHHHHHHHHHHHHTTHTTTTEE---E---TT
T ss_pred ccCCeEEEeecCCC---ccccCCHHHHHHHHHHHHhhC--c-eEEEEccchHHHHHHHHHHHHhcccceEe---e---cC
Confidence 46899999985555 677789999999999885544 3 455543333 3333443 22211100 0 01
Q ss_pred CchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 010181 449 NMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 497 (516)
Q Consensus 449 ~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELr 497 (516)
..+ +--=+.+++.||++||. -|....|+.-+.
T Consensus 171 ~~~----------------l~e~~ali~~a~~~I~~-Dtg~~HlA~a~~ 202 (247)
T PF01075_consen 171 KTS----------------LRELAALISRADLVIGN-DTGPMHLAAALG 202 (247)
T ss_dssp TS-----------------HHHHHHHHHTSSEEEEE-SSHHHHHHHHTT
T ss_pred CCC----------------HHHHHHHHhcCCEEEec-CChHHHHHHHHh
Confidence 111 12224688999999998 788888887654
No 15
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=39.09 E-value=8.6 Score=43.30 Aligned_cols=43 Identities=28% Similarity=0.502 Sum_probs=30.2
Q ss_pred eEEEEEcCCCccc--cccccCHHHHHHHHHHH--------------H---HhCCCCcEEEEe
Q 010181 378 MLSMHVRMGDKAC--EMKVVEFEKYMLLADRI--------------R---KHFPHLNSIWLS 420 (516)
Q Consensus 378 iVGVHIRRgDK~~--Ea~~~~~eeYm~~Ve~~--------------~---~~~p~~r~IfLA 420 (516)
+|-.|-|||||+. ...++.+++|.-...+. . +.+|.+.+|||+
T Consensus 535 LI~~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS 596 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLS 596 (776)
T ss_pred HHHHHHhcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEEe
Confidence 6778999999985 56778888885544311 1 235667789987
No 16
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=35.74 E-value=2.4e+02 Score=28.00 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=56.0
Q ss_pred CCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-CChHHHHHhh-cCCCceEEeeceecccCCchhH
Q 010181 376 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-EMQEVVDKSK-LYPHWNFYFTNVTRQVGNMTMA 453 (516)
Q Consensus 376 ~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLAT-DD~~Vi~eak-~Yp~y~f~~t~I~r~~g~~s~~ 453 (516)
.|+|++|.=.+ ...+..+.+.|.+.++.+.+. +.+-|++.+ +|....+++. .+++... + ...|..
T Consensus 121 ~~~i~i~~~~~---~~~k~w~~~~~~~l~~~l~~~--~~~ivl~g~~~e~~~~~~i~~~~~~~~~----~-~~~~~~--- 187 (279)
T cd03789 121 KPVVVLPPGAS---GPAKRWPAERFAALADRLLAR--GARVVLTGGPAERELAEEIAAALGGPRV----V-NLAGKT--- 187 (279)
T ss_pred CCEEEECCCCC---CccccCCHHHHHHHHHHHHHC--CCEEEEEechhhHHHHHHHHHhcCCCcc----c-cCcCCC---
Confidence 68999998433 344668888999999888765 544333333 3344555544 3322111 0 011111
Q ss_pred HHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 010181 454 IYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 497 (516)
Q Consensus 454 ~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELr 497 (516)
++.+ =+.+++.||.+||. .|....|+.-+.
T Consensus 188 ----------~l~e---~~~li~~~~l~I~~-Dsg~~HlA~a~~ 217 (279)
T cd03789 188 ----------SLRE---LAALLARADLVVTN-DSGPMHLAAALG 217 (279)
T ss_pred ----------CHHH---HHHHHHhCCEEEee-CCHHHHHHHHcC
Confidence 2222 25688999999998 678888887543
No 17
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=35.58 E-value=2.8e+02 Score=28.75 Aligned_cols=98 Identities=13% Similarity=0.127 Sum_probs=57.5
Q ss_pred CCCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeC-C--ChHHHHHhhc-CCCceEEeeceecccCC
Q 010181 374 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLST-E--MQEVVDKSKL-YPHWNFYFTNVTRQVGN 449 (516)
Q Consensus 374 ~~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLAT-D--D~~Vi~eak~-Yp~y~f~~t~I~r~~g~ 449 (516)
.+.|+|+||.=-+ ...+.-+.+.|.+.++.+... +.+-|++.+ + |....+++.. .+.-. +....|.
T Consensus 181 ~~~~~i~i~pga~---~~~K~Wp~e~fa~l~~~L~~~--~~~vvl~ggp~e~e~~~~~~i~~~~~~~~-----~~~l~g~ 250 (352)
T PRK10422 181 VTQNYVVIQPTAR---QIFKCWDNDKFSAVIDALQAR--GYEVVLTSGPDKDDLACVNEIAQGCQTPP-----VTALAGK 250 (352)
T ss_pred CCCCeEEEecCCC---ccccCCCHHHHHHHHHHHHHC--CCeEEEEcCCChHHHHHHHHHHHhcCCCc-----cccccCC
Confidence 3578999998432 256778899999999887543 343344434 2 2333344431 11101 1111122
Q ss_pred chhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 450 MTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 450 ~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
.+ +-.=+.+++.||+|||. .|..-.|+.-+--
T Consensus 251 ~s----------------L~el~ali~~a~l~v~n-DSGp~HlAaA~g~ 282 (352)
T PRK10422 251 TT----------------FPELGALIDHAQLFIGV-DSAPAHIAAAVNT 282 (352)
T ss_pred CC----------------HHHHHHHHHhCCEEEec-CCHHHHHHHHcCC
Confidence 22 22234688999999998 8889899886643
No 18
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=32.38 E-value=78 Score=32.45 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=29.8
Q ss_pred CCCcEEEEeCCChHHHHHhhcCCCceEEeeceecccCCchhHHH
Q 010181 412 PHLNSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVGNMTMAIY 455 (516)
Q Consensus 412 p~~r~IfLATDD~~Vi~eak~Yp~y~f~~t~I~r~~g~~s~~~~ 455 (516)
....+|+|||||+.|.+..+++.. ....|....++|+-..++-
T Consensus 41 s~~~rvvVATDde~I~~av~~~G~-~avmT~~~h~SGTdR~~Ev 83 (247)
T COG1212 41 SGADRVVVATDDERIAEAVQAFGG-EAVMTSKDHQSGTDRLAEV 83 (247)
T ss_pred cCCCeEEEEcCCHHHHHHHHHhCC-EEEecCCCCCCccHHHHHH
Confidence 367899999999999999998865 3333444455565444443
No 19
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=31.97 E-value=1.7e+02 Score=30.22 Aligned_cols=104 Identities=19% Similarity=0.273 Sum_probs=61.8
Q ss_pred CCCCeEEEEEcCCCcc---ccccc--cCHHHHHHHHHHHHHhCCCCcEEEEeCCChHHHHHhhcCCC---ceEEeeceec
Q 010181 374 IPRPMLSMHVRMGDKA---CEMKV--VEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYPH---WNFYFTNVTR 445 (516)
Q Consensus 374 ~~~PiVGVHIRRgDK~---~Ea~~--~~~eeYm~~Ve~~~~~~p~~r~IfLATDD~~Vi~eak~Yp~---y~f~~t~I~r 445 (516)
--.|+-|+|-|+=+-- ++..+ .+++.--+.+ .-.+.+|+-|||.+|.=+|.-+.++..-|= .+||+++
T Consensus 110 DlgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI-~~ik~NP~drRIimsAwNP~dl~~malpPCH~~~QFyV~~--- 185 (293)
T KOG0673|consen 110 DLGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVI-NKIKNNPDDRRIIMSAWNPLDLGKMALPPCHTFCQFYVAN--- 185 (293)
T ss_pred CcccccceeeeecCccccccccccccccHHHHHHHH-HHHhcCCccceeeeeccCccccccccCCccceeeEEEecC---
Confidence 3469999999985532 12222 2333333322 335779999999999999988877664442 5577554
Q ss_pred ccCCchhHHHhhhcCCcccc-------hhHHHHHHHHhcCCceEEcC
Q 010181 446 QVGNMTMAIYEASLGRETST-------NYPLVNFLMATDSDFFIGAL 485 (516)
Q Consensus 446 ~~g~~s~~~~~~~~gs~~sl-------~~~lvDl~lLsecDyfVGT~ 485 (516)
|..|-.-|.++ .+-++ -+.|+-..++--|++--|.|
T Consensus 186 --GelScq~YQrS--~dmglGVPFnIASYsLLT~miAhv~gl~pgdf 228 (293)
T KOG0673|consen 186 --GELSCQMYQRS--GDMGLGVPFNIASYSLLTCMIAHVCGLKPGDF 228 (293)
T ss_pred --Ceeeehhhhhc--cccccCccchhHHHHHHHHHHHHHhCCCCCce
Confidence 45555556554 22222 24455566677777754444
No 20
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=31.17 E-value=3.9e+02 Score=27.60 Aligned_cols=101 Identities=9% Similarity=0.068 Sum_probs=57.5
Q ss_pred CCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCC-ChHHHHHhh-cCCCceEEeeceecccCCchh
Q 010181 375 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTE-MQEVVDKSK-LYPHWNFYFTNVTRQVGNMTM 452 (516)
Q Consensus 375 ~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLATD-D~~Vi~eak-~Yp~y~f~~t~I~r~~g~~s~ 452 (516)
++|+|+||. .+- ....+.-+.+.|.+.++.+.. .+.+-|++.+. |.+..+++. ..+.-.. ..+....|..
T Consensus 179 ~~~~i~i~p-ga~-~~~~K~Wp~e~~a~l~~~l~~--~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~--~~~~~l~g~~-- 250 (348)
T PRK10916 179 ERPIIGFCP-GAE-FGPAKRWPHYHYAELAQQLID--EGYQVVLFGSAKDHEAGNEILAALNTEQQ--AWCRNLAGET-- 250 (348)
T ss_pred CCCEEEEeC-CCC-CccccCCCHHHHHHHHHHHHH--CCCeEEEEeCHHhHHHHHHHHHhcccccc--cceeeccCCC--
Confidence 578999999 432 135678899999999998753 24433444443 333444443 2221000 0000011111
Q ss_pred HHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 453 AIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 453 ~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
+ +--=+.+++.||.+||. .|..-.|+.-+--
T Consensus 251 -----------s---L~el~ali~~a~l~I~n-DTGp~HlAaA~g~ 281 (348)
T PRK10916 251 -----------Q---LEQAVILIAACKAIVTN-DSGLMHVAAALNR 281 (348)
T ss_pred -----------C---HHHHHHHHHhCCEEEec-CChHHHHHHHhCC
Confidence 1 22334688999999998 8888888877654
No 21
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=31.00 E-value=2.5e+02 Score=28.98 Aligned_cols=73 Identities=16% Similarity=0.231 Sum_probs=46.2
Q ss_pred HHHHHHHHHHhCCCC-cEEEEeCCChHHHHHhh-----cCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHH
Q 010181 400 YMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFL 473 (516)
Q Consensus 400 Ym~~Ve~~~~~~p~~-r~IfLATDD~~Vi~eak-----~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~ 473 (516)
+.++++.+.+..... ++||+....|.|.+++. +||+-++ +....|-.+..+ . ..++.-.
T Consensus 93 G~Dl~~~Ll~~a~~~~~~vfllGgkp~V~~~a~~~l~~~~p~l~i----vg~h~GYf~~~e---------~--~~i~~~I 157 (253)
T COG1922 93 GTDLVEALLKRAAEEGKRVFLLGGKPGVAEQAAAKLRAKYPGLKI----VGSHDGYFDPEE---------E--EAIVERI 157 (253)
T ss_pred hHHHHHHHHHHhCccCceEEEecCCHHHHHHHHHHHHHHCCCceE----EEecCCCCChhh---------H--HHHHHHH
Confidence 456666666654443 69999999999999986 3897666 333334322111 1 1345555
Q ss_pred HHhcCCceEEcCCC
Q 010181 474 MATDSDFFIGALGS 487 (516)
Q Consensus 474 lLsecDyfVGT~SS 487 (516)
-.+..|.+...+++
T Consensus 158 ~~s~pdil~VgmG~ 171 (253)
T COG1922 158 AASGPDILLVGMGV 171 (253)
T ss_pred HhcCCCEEEEeCCC
Confidence 66777777766665
No 22
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=30.27 E-value=2.1e+02 Score=27.05 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=46.1
Q ss_pred CcEEEEeCCChHHHHHhh-----cCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCc
Q 010181 414 LNSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGST 488 (516)
Q Consensus 414 ~r~IfLATDD~~Vi~eak-----~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSn 488 (516)
..+|||....+++++++. +||+-++ +....|...... ...+++..-.+..|+++..+++=
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i----~g~~~g~~~~~~-----------~~~i~~~I~~~~pdiv~vglG~P 110 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKI----VGYHHGYFGPEE-----------EEEIIERINASGADILFVGLGAP 110 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEE----EEecCCCCChhh-----------HHHHHHHHHHcCCCEEEEECCCC
Confidence 358999999999999854 5999776 221222211111 11267777788899999998885
Q ss_pred HH-HHHHHHHhcc
Q 010181 489 WC-FLIDGMRNTG 500 (516)
Q Consensus 489 v~-RLi~ELrqt~ 500 (516)
-- ..+.++++..
T Consensus 111 kQE~~~~~~~~~l 123 (171)
T cd06533 111 KQELWIARHKDRL 123 (171)
T ss_pred HHHHHHHHHHHHC
Confidence 33 3455555554
No 23
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=29.82 E-value=3.8e+02 Score=27.56 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=58.0
Q ss_pred CCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEe-C-C--ChHHHHHhh-cCCCceEEeeceecccCC
Q 010181 375 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLS-T-E--MQEVVDKSK-LYPHWNFYFTNVTRQVGN 449 (516)
Q Consensus 375 ~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLA-T-D--D~~Vi~eak-~Yp~y~f~~t~I~r~~g~ 449 (516)
..|+|+||.= + . ...+.-+.+.|.+.++.+... +. +|+|. + + |..+.+++. ..+.=. +....|.
T Consensus 180 ~~~~i~i~p~-a-~-~~~K~Wp~e~~~~l~~~l~~~--~~-~ivl~g~p~~~e~~~~~~i~~~~~~~~-----~~~l~g~ 248 (344)
T TIGR02201 180 GQNYIVIQPT-S-R-WFFKCWDNDRFSALIDALHAR--GY-EVVLTSGPDKDELAMVNEIAQGCQTPR-----VTSLAGK 248 (344)
T ss_pred CCCEEEEeCC-C-C-ccccCCCHHHHHHHHHHHHhC--CC-eEEEecCCCHHHHHHHHHHHhhCCCCc-----ccccCCC
Confidence 5689999972 2 1 256778899999999988653 34 34444 3 1 334566665 222100 1111122
Q ss_pred chhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 450 MTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 450 ~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
.++. -=+-+++.||+|||. .|..-.|+.-+--
T Consensus 249 ~sL~----------------el~ali~~a~l~Vs~-DSGp~HlAaA~g~ 280 (344)
T TIGR02201 249 LTLP----------------QLAALIDHARLFIGV-DSVPMHMAAALGT 280 (344)
T ss_pred CCHH----------------HHHHHHHhCCEEEec-CCHHHHHHHHcCC
Confidence 2221 224578899999999 8889888876643
No 24
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=29.80 E-value=2.4e+02 Score=26.68 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=47.7
Q ss_pred cEEEEeCCChHHHHHhh-----cCCCceEEeeceecccCCchhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcH
Q 010181 415 NSIWLSTEMQEVVDKSK-----LYPHWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTW 489 (516)
Q Consensus 415 r~IfLATDD~~Vi~eak-----~Yp~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv 489 (516)
.+|||...++.+.+++. .||+-.+ +....|...- .-...+++..-.+..|+++..+++--
T Consensus 49 ~~ifllG~~~~~~~~~~~~l~~~yP~l~i----vg~~~g~f~~-----------~~~~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 49 KRIFLLGGSEEVLEKAAANLRRRYPGLRI----VGYHHGYFDE-----------EEEEAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHHCCCeEE----EEecCCCCCh-----------hhHHHHHHHHHHcCCCEEEEECCCCH
Confidence 48999999999999654 4999776 3222222211 11224666667799999999988863
Q ss_pred -HHHHHHHHhccC
Q 010181 490 -CFLIDGMRNTGG 501 (516)
Q Consensus 490 -~RLi~ELrqt~~ 501 (516)
=+.++++++..+
T Consensus 114 QE~~~~~~~~~l~ 126 (172)
T PF03808_consen 114 QERWIARHRQRLP 126 (172)
T ss_pred HHHHHHHHHHHCC
Confidence 356667666654
No 25
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=23.81 E-value=5.8e+02 Score=26.00 Aligned_cols=93 Identities=11% Similarity=0.091 Sum_probs=56.1
Q ss_pred CCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEe--C-CChHHHHHhhc-CCCceEEeeceecccCCc
Q 010181 375 PRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLS--T-EMQEVVDKSKL-YPHWNFYFTNVTRQVGNM 450 (516)
Q Consensus 375 ~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLA--T-DD~~Vi~eak~-Yp~y~f~~t~I~r~~g~~ 450 (516)
..|+|++|.-.+ ...+.-+.+.|.+.++.+.+. +. +|+|. + +|....+++.. .+.-. + .|..
T Consensus 177 ~~~~i~~~~~~s---~~~k~Wp~e~~a~li~~l~~~--~~-~ivl~~G~~~e~~~~~~i~~~~~~~~-----l---~g~~ 242 (322)
T PRK10964 177 AGPYLVFLHATT---RDDKHWPEAHWRELIGLLAPS--GL-RIKLPWGAEHEEQRAKRLAEGFPYVE-----V---LPKL 242 (322)
T ss_pred CCCeEEEEeCCC---cccccCCHHHHHHHHHHHHHC--CC-eEEEeCCCHHHHHHHHHHHccCCcce-----e---cCCC
Confidence 467888776443 245778999999999988543 33 45553 3 34444455442 22100 1 1222
Q ss_pred hhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHHh
Q 010181 451 TMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMRN 498 (516)
Q Consensus 451 s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELrq 498 (516)
++ --=+-+++.||+|||. .|..-.|+.-+.-
T Consensus 243 sL----------------~elaali~~a~l~I~n-DSGp~HlA~A~g~ 273 (322)
T PRK10964 243 SL----------------EQVARVLAGAKAVVSV-DTGLSHLTAALDR 273 (322)
T ss_pred CH----------------HHHHHHHHhCCEEEec-CCcHHHHHHHhCC
Confidence 22 2224578899999998 8888888877654
No 26
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=22.86 E-value=1.1e+02 Score=27.64 Aligned_cols=64 Identities=20% Similarity=0.374 Sum_probs=47.4
Q ss_pred ccCCCCCCcccCCccCChhhHHHHHHHHHhhcCCCCCCCCCCceEEEeecCCCCcchhHHHHHHHHHHHHHHhcCc
Q 010181 127 ISEGVYPPWITGSDEENYPLTRKVQRDIWVHQHPPNCWDPNVRFLVADWERLPGFGIGAQIAGMCGLLAIAINEKR 202 (516)
Q Consensus 127 ~~~~~~~~w~~g~d~e~~pLt~~vQr~I~~~QnP~dCs~A~~K~Lvc~~~~~cGfGcg~H~~~~C~~l~~A~~t~R 202 (516)
++=|..|.|+..-|..-.-+-..+||-.|..|| |++.+. .-|+|.-.|.++-.++|..+++-++
T Consensus 34 VKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~---------KYi~~K---r~gia~~~~v~~g~~~~~Y~~~Y~~ 97 (104)
T PF10206_consen 34 VKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQH---------KYINVK---RGGIAPFFQVLAGYMVFSYCINYKH 97 (104)
T ss_pred eecchhHHHHhhccCCHHHHHHHHHHHHHHHHH---------hhhcee---cCCcchhHHHHHHHHHHHHHHhhcH
Confidence 456888999966666566788899999999999 888753 3678777776666666666665544
Done!