Query 010181
Match_columns 516
No_of_seqs 177 out of 220
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 21:39:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010181.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010181hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pswa_ c.87.1.7 (A:) ADP-hept 45.6 20 0.0015 32.1 7.1 100 374-497 178-280 (348)
2 d1h7ea_ c.68.1.13 (A:) CMP:2-k 28.3 76 0.0055 26.6 7.8 27 408-434 37-63 (245)
3 d1o7qa_ c.68.1.9 (A:) alpha-1, 26.9 22 0.0016 33.4 3.9 95 377-484 46-143 (287)
4 d1vh1a_ c.68.1.13 (A:) CMP:2-k 21.1 42 0.003 28.6 4.4 23 413-435 40-62 (246)
5 d1lzia_ c.68.1.9 (A:) Glycosyl 20.7 23 0.0017 33.1 2.7 94 377-484 52-148 (283)
6 d1vica_ c.68.1.13 (A:) CMP:2-k 16.5 61 0.0044 27.4 4.4 23 413-435 40-62 (255)
7 d1qwja_ c.68.1.13 (A:) CMP acy 15.7 53 0.0039 27.3 3.8 23 412-434 42-64 (228)
8 d1eyra_ c.68.1.13 (A:) CMP acy 11.2 1.2E+02 0.0086 24.7 4.7 23 413-435 44-66 (225)
9 d2g8oa1 d.117.1.1 (A:1-264) Th 10.3 65 0.0047 29.4 2.7 73 406-486 117-200 (264)
10 d1tswa_ d.117.1.1 (A:) Thymidy 9.4 62 0.0045 30.4 2.2 99 376-486 143-252 (316)
No 1
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]}
Probab=45.60 E-value=20 Score=32.13 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=58.2
Q ss_pred CCCCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEE-eCCChHHHHHhhc-CCC-ceEEeeceecccCCc
Q 010181 374 IPRPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWL-STEMQEVVDKSKL-YPH-WNFYFTNVTRQVGNM 450 (516)
Q Consensus 374 ~~~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfL-ATDD~~Vi~eak~-Yp~-y~f~~t~I~r~~g~~ 450 (516)
-.+|+|++|. |-...+.+.-+.+.|.+.++.+.+.+.. -|++ +.+|.+..++..+ ... -. ..+....|..
T Consensus 178 ~~~~~i~~~~--~~~~~~~k~wp~~~~~~L~~~l~~~~~~--ivl~g~~~e~~~~~~~~~~~~~~~~---~~~~~l~g~~ 250 (348)
T d1pswa_ 178 SERPMIGFCP--GAEFGPAKRWPHYHYAELAKQLIDEGYQ--VVLFGSAKDHEAGNEILAALNTEQQ---AWCRNLAGET 250 (348)
T ss_dssp SSSCEEEEEC--CCTTCGGGSCCHHHHHHHHHHHHHTTCE--EEECCCGGGHHHHHHHHTTSCHHHH---TTEEECTTTS
T ss_pred cCCCeEEecc--ccchhhccccchHHHhhhHHHHhhcCCc--cccccccchHHHHHHHHHhhhcccc---cccccccCCc
Confidence 3578999998 3344466788999999999988776432 2333 2334444444431 110 00 0011111111
Q ss_pred hhHHHhhhcCCcccchhHHHHHHHHhcCCceEEcCCCcHHHHHHHHH
Q 010181 451 TMAIYEASLGRETSTNYPLVNFLMATDSDFFIGALGSTWCFLIDGMR 497 (516)
Q Consensus 451 s~~~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT~SSnv~RLi~ELr 497 (516)
+ +.-=+.++..||++||. .|....|+.-+-
T Consensus 251 -------------s---l~el~~li~~a~l~I~~-Dtg~~HlAaa~g 280 (348)
T d1pswa_ 251 -------------Q---LDQAVILIAACKAIVTN-DSGLMHVAAALN 280 (348)
T ss_dssp -------------C---HHHHHHHHHTSSEEEEE-SSHHHHHHHHTT
T ss_pred -------------c---HHHHHHHHhcceeEeec-CccHHHHHHHcC
Confidence 1 22224788999999998 778888887653
No 2
>d1h7ea_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KpsU [TaxId: 562]}
Probab=28.27 E-value=76 Score=26.62 Aligned_cols=27 Identities=11% Similarity=0.330 Sum_probs=21.7
Q ss_pred HHhCCCCcEEEEeCCChHHHHHhhcCC
Q 010181 408 RKHFPHLNSIWLSTEMQEVVDKSKLYP 434 (516)
Q Consensus 408 ~~~~p~~r~IfLATDD~~Vi~eak~Yp 434 (516)
..+.....+|+|+||+..+.+.++.|.
T Consensus 37 a~~~~~~d~Iiv~td~~~i~~~~~~~~ 63 (245)
T d1h7ea_ 37 ALQVAGVAEVWVATDDPRVEQAVQAFG 63 (245)
T ss_dssp HHTCTTCCEEEEEESCHHHHHHHHHTT
T ss_pred HHhCCCCCeEEEecccccchhhhhhcC
Confidence 344456679999999999999998774
No 3
>d1o7qa_ c.68.1.9 (A:) alpha-1,3-galactosyltransferase catalytic domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=26.85 E-value=22 Score=33.37 Aligned_cols=95 Identities=11% Similarity=0.083 Sum_probs=46.7
Q ss_pred CeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCC-cEEEEeCCChHHHHHhhcCCCceEEeeceecccC--CchhH
Q 010181 377 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTMA 453 (516)
Q Consensus 377 PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~-r~IfLATDD~~Vi~eak~Yp~y~f~~t~I~r~~g--~~s~~ 453 (516)
=+||+=|=-|-|-.. .-++.|++-|++++. |+. +..||-||++.-+.....-|..++....|....+ .+++.
T Consensus 46 ~tIgl~vfAtgkY~~---~Fl~~FleSaEk~Fm--~g~~v~yyVFTD~~~~~P~i~l~~~r~~~v~~v~~~~~Wp~iTL~ 120 (287)
T d1o7qa_ 46 ITVGLTVFAVGRYIE---HYLEEFLTSANKHFM--VGHPVIFYIMVDDVSRMPLIELGPLRSFKVFKIKPEKRWQDISMM 120 (287)
T ss_dssp CCEEEEEEECTTHHH---HHHHHHHHHHHHHBS--TTSCEEEEEEESCGGGCCCCCCCTTEEEEEEECCCCSSHHHHHHH
T ss_pred ceEEEEEEEeChhHH---HHHHHHHHHHHHhcC--CCCeEEEEEEECCcccCCccccCCccceEEEEccccCCCchhHHH
Confidence 367776632222110 124455555554432 443 4899999998666555544555543222322111 22232
Q ss_pred HHhhhcCCcccchhHHHHHHHHhcCCceEEc
Q 010181 454 IYEASLGRETSTNYPLVNFLMATDSDFFIGA 484 (516)
Q Consensus 454 ~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT 484 (516)
++. . ..-.+.=.++.++||++|-
T Consensus 121 Rm~-------~-i~~~i~~~~~~e~Dylf~~ 143 (287)
T d1o7qa_ 121 RMK-------T-IGEHIVAHIQHEVDFLFCM 143 (287)
T ss_dssp HHH-------H-HHHHHHHTHHHHCSEEEEE
T ss_pred HHH-------H-HHHHHHHhhhccCCeEEEE
Confidence 221 1 1112345678899999884
No 4
>d1vh1a_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Escherichia coli, KdsB [TaxId: 562]}
Probab=21.06 E-value=42 Score=28.60 Aligned_cols=23 Identities=13% Similarity=0.120 Sum_probs=19.9
Q ss_pred CCcEEEEeCCChHHHHHhhcCCC
Q 010181 413 HLNSIWLSTEMQEVVDKSKLYPH 435 (516)
Q Consensus 413 ~~r~IfLATDD~~Vi~eak~Yp~ 435 (516)
.+.+|||||||..+.+.+++|..
T Consensus 40 ~i~~iiVsTd~~~i~~~~~~~g~ 62 (246)
T d1vh1a_ 40 GAERIIVATDHEDVARAVEAAGG 62 (246)
T ss_dssp TCSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCcEEEEecCccccchhhcccc
Confidence 45799999999999999997753
No 5
>d1lzia_ c.68.1.9 (A:) Glycosyltransferase A catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.66 E-value=23 Score=33.15 Aligned_cols=94 Identities=10% Similarity=0.065 Sum_probs=48.6
Q ss_pred CeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCC-cEEEEeCCChHHHHHhhcCCCceEEeeceecccC--CchhH
Q 010181 377 PMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHL-NSIWLSTEMQEVVDKSKLYPHWNFYFTNVTRQVG--NMTMA 453 (516)
Q Consensus 377 PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~-r~IfLATDD~~Vi~eak~Yp~y~f~~t~I~r~~g--~~s~~ 453 (516)
=+|||=|=-|-|-. .=++.|++-|++++. |+. +..||-||++.-+.+...-+..++..-.|....+ ..++.
T Consensus 52 ~tIgl~vfATGkY~----~Fl~~f~eSaek~Fm--pg~~v~yyvFTD~~~~vP~i~l~~~~~v~v~~i~~~~~Wp~iTL~ 125 (283)
T d1lzia_ 52 TTIGLTVFAIKKYV----AFLKLFLETAEKHFM--VGHRVHYYVFTDQPAAVPRVTLGTGRQLSVLEVRAYKRWQDVSMR 125 (283)
T ss_dssp CEEEEEEEECGGGG----GGHHHHHHHHHHHBS--TTSEEEEEEEESCGGGSCCCCCCTTEEEEEEECC-----------
T ss_pred ceEEEEEEEeChHH----HHHHHHHHHHHHhcC--CCCeeEEEEEECCCccCCccccccCCceEEEeccCCCCCchHHHH
Confidence 47888775554432 236777787777643 443 4899999998766655544444542111211100 12221
Q ss_pred HHhhhcCCcccchhHHHHHHHHhcCCceEEc
Q 010181 454 IYEASLGRETSTNYPLVNFLMATDSDFFIGA 484 (516)
Q Consensus 454 ~~~~~~gs~~sl~~~lvDl~lLsecDyfVGT 484 (516)
+ -+.+.. .+.=.++.++||+++-
T Consensus 126 R-------~~~i~k-~i~~~~~~e~DyLf~~ 148 (283)
T d1lzia_ 126 R-------MEMISD-FCERRFLSEVDYLVCV 148 (283)
T ss_dssp ----------------CHHHHHHHCSEEEEE
T ss_pred H-------HHHHHH-HHHHHhhhcCCEEEEe
Confidence 1 111111 2245678999999884
No 6
>d1vica_ c.68.1.13 (A:) CMP:2-keto-3-deoxy-manno-octonic acid (CMP-KDO)synthetase {Haemophilus influenzae [TaxId: 727]}
Probab=16.46 E-value=61 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=19.6
Q ss_pred CCcEEEEeCCChHHHHHhhcCCC
Q 010181 413 HLNSIWLSTEMQEVVDKSKLYPH 435 (516)
Q Consensus 413 ~~r~IfLATDD~~Vi~eak~Yp~ 435 (516)
.+.+|+|+|||+++.+.+++|..
T Consensus 40 ~i~~IiVsTd~~~i~~~~~~~~~ 62 (255)
T d1vica_ 40 GASRVIIATDNENVADVAKSFGA 62 (255)
T ss_dssp TCSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCeEEEEcCCcccchhhhhhcc
Confidence 35789999999999999988753
No 7
>d1qwja_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.73 E-value=53 Score=27.30 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.0
Q ss_pred CCCcEEEEeCCChHHHHHhhcCC
Q 010181 412 PHLNSIWLSTEMQEVVDKSKLYP 434 (516)
Q Consensus 412 p~~r~IfLATDD~~Vi~eak~Yp 434 (516)
..+..|+|||||..+.+.+++|.
T Consensus 42 ~~id~Iivstd~~~i~~~~~~~~ 64 (228)
T d1qwja_ 42 GVFQSVWVSTDHDEIENVAKQFG 64 (228)
T ss_dssp TCCSEEEEEESCHHHHHHHHHTT
T ss_pred CCcceEEEecchhhhhhhhhhcC
Confidence 45668999999999999999885
No 8
>d1eyra_ c.68.1.13 (A:) CMP acylneuraminate synthetase {Neisseria meningitidis [TaxId: 487]}
Probab=11.23 E-value=1.2e+02 Score=24.73 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.6
Q ss_pred CCcEEEEeCCChHHHHHhhcCCC
Q 010181 413 HLNSIWLSTEMQEVVDKSKLYPH 435 (516)
Q Consensus 413 ~~r~IfLATDD~~Vi~eak~Yp~ 435 (516)
....|+|+||++.+.+.+++|..
T Consensus 44 ~~~~Iiv~td~~~i~~i~~~~~~ 66 (225)
T d1eyra_ 44 CFDRIIVSTDGGLIAEEAKNFGV 66 (225)
T ss_dssp CCSEEEEEESCHHHHHHHHHTTC
T ss_pred CCceEEEeeccchhhhhhhhhcc
Confidence 34579999999999998888865
No 9
>d2g8oa1 d.117.1.1 (A:1-264) Thymidylate synthase {Escherichia coli [TaxId: 562]}
Probab=10.33 E-value=65 Score=29.43 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=46.3
Q ss_pred HHHHhCCCCcEEEEeCCChHHHHHhhcCC---CceEEeeceecccCCchhHHHhhhcCCcccchhHHHHH--------HH
Q 010181 406 RIRKHFPHLNSIWLSTEMQEVVDKSKLYP---HWNFYFTNVTRQVGNMTMAIYEASLGRETSTNYPLVNF--------LM 474 (516)
Q Consensus 406 ~~~~~~p~~r~IfLATDD~~Vi~eak~Yp---~y~f~~t~I~r~~g~~s~~~~~~~~gs~~sl~~~lvDl--------~l 474 (516)
+-.+..|+-||+.+++=+|...++...+| .++|+ | |. |..++..+.+ |.+-+.++-.|+ .|
T Consensus 117 ~~Lk~~p~sRR~v~~~wnp~~~~~~~l~PC~~~~qf~---v-~~-~~L~~~~~qR---S~D~~lG~p~ni~~~~~L~~~i 188 (264)
T d2g8oa1 117 NQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFY---V-AD-GKLSCQLYQR---SCDVFLGLPFNIASYALLVHMM 188 (264)
T ss_dssp HHHHHCTTCSCCEEECCCGGGGGGSSSCCSEEEEEEE---E-ET-TEEEEEEEEE---EEETTTHHHHHHHHHHHHHHHH
T ss_pred HHhhcCccceeEEEEccchhhhhhccccccceeeEEE---E-cC-CCcEEEEEEc---hhhhhhcCChHHHHHHHHHHHH
Confidence 34468999999999999998888777666 24443 2 21 4344444433 333344444443 47
Q ss_pred HhcCCceEEcCC
Q 010181 475 ATDSDFFIGALG 486 (516)
Q Consensus 475 LsecDyfVGT~S 486 (516)
+..|++-+|.+.
T Consensus 189 A~~~gl~~G~~~ 200 (264)
T d2g8oa1 189 AQQCDLEVGDFV 200 (264)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHhhccCceEEE
Confidence 888999888854
No 10
>d1tswa_ d.117.1.1 (A:) Thymidylate synthase {Lactobacillus casei [TaxId: 1582]}
Probab=9.36 E-value=62 Score=30.44 Aligned_cols=99 Identities=17% Similarity=0.228 Sum_probs=56.7
Q ss_pred CCeEEEEEcCCCccccccccCHHHHHHHHHHHHHhCCCCcEEEEeCCChHHHHHhhcCCC---ceEEeeceecccCCchh
Q 010181 376 RPMLSMHVRMGDKACEMKVVEFEKYMLLADRIRKHFPHLNSIWLSTEMQEVVDKSKLYPH---WNFYFTNVTRQVGNMTM 452 (516)
Q Consensus 376 ~PiVGVHIRRgDK~~Ea~~~~~eeYm~~Ve~~~~~~p~~r~IfLATDD~~Vi~eak~Yp~---y~f~~t~I~r~~g~~s~ 452 (516)
-|+-|.+.|.-+.-.. ..++..-..+++ .+.+|+-||+.+++=+|..+++....|= ++|+. +. |..++
T Consensus 143 g~~YG~qwr~~~~~~~---~~~DQl~~vi~~-Lk~~p~sRR~iis~Wnp~~~~~~~lpPCh~~~qf~v----~~-g~L~~ 213 (316)
T d1tswa_ 143 GLVYGSQWRAWHTSKG---DTIDQLGDVIEQ-IKTHPYSRALIVSAWNPEDVPTMALPPCHTLYQFYV----ND-GKLSL 213 (316)
T ss_dssp CSSHHHHHHCEECSSS---CEECHHHHHHHH-HHHCTTCSCCEEECCCTTTGGGCSSCCSEEEEEEEE----ET-TEEEE
T ss_pred ccccccceeeccccCC---cchhHHHHHHHH-hhcchhccceeeeeCCHHHhccCCCcccchhheeee----cC-CceEE
Confidence 3566666665332211 122333334433 4678999999999999998877776662 44432 21 33444
Q ss_pred HHHhhhcCCcccchh--------HHHHHHHHhcCCceEEcCC
Q 010181 453 AIYEASLGRETSTNY--------PLVNFLMATDSDFFIGALG 486 (516)
Q Consensus 453 ~~~~~~~gs~~sl~~--------~lvDl~lLsecDyfVGT~S 486 (516)
.-+.++ .+-..+ .++=-+|+..|++=+|.+.
T Consensus 214 ~~~qRS---~D~~lG~pfNi~~yalL~~~iA~~~gl~~G~~~ 252 (316)
T d1tswa_ 214 QLYQRS---ADIFLGVPFNIASYALLTHLVAHECGLEVGEFI 252 (316)
T ss_dssp EEEEEE---EETTTTHHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEcc---hheeeeCcHHHHHHHHHHHHHHHHHhccCceEE
Confidence 444442 222222 3444467889999988864
Done!