BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010182
(516 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 107/224 (47%), Gaps = 52/224 (23%)
Query: 211 EQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXXX 269
+++DL S L LP +AF R+ LRL+ L++N L+ +P I
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE---------------- 83
Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
L NL+ L V+ NKL A LP + +LVNL +L
Sbjct: 84 ------LKNLETLWVTDNKLQA-----------------------LPIGVFDQLVNLAEL 114
Query: 330 LVPLNKIRFLPTSIGE-MASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL 387
+ N+++ LP + + + L +L +NEL LP KLT+L+ L + +N +K +
Sbjct: 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN--QLKRV 172
Query: 388 PE-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
PE F +LT LK L L NNQ+ +P F L+KL L L+ENP
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/161 (34%), Positives = 92/161 (57%), Gaps = 7/161 (4%)
Query: 273 IGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
I L N++ L + GNKL + ++ +L L + N+L LP + +L NL++L++
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 333 LNKIRFLPTSI-GEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPE- 389
N+++ LP + ++ +L +L+ N+L LP KLTNL L++S N ++ LPE
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYN--QLQSLPEG 175
Query: 390 TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
F +LT LK+L L NQ+ ++P+ F RL L + L +NP
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNP 216
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 69/146 (47%), Gaps = 25/146 (17%)
Query: 215 LSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXXXPDSI 273
L+ L+ LP F ++ L+ + L N L+ +PD +
Sbjct: 92 LTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDK-------------------- 131
Query: 274 GLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
L NL L+++ N+L +LP + +L ELD S+N+L LP + +L L+ L +
Sbjct: 132 --LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY 189
Query: 333 LNKIRFLPTSIGE-MASLRHLDAHFN 357
N+++ +P + + + SL+++ H N
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 93/161 (57%), Gaps = 7/161 (4%)
Query: 273 IGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
I L N++ L + GNKL + ++ +L L + N+L LP + +L NL++L++
Sbjct: 59 IQYLPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 333 LNKIRFLPTSI-GEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPE- 389
N+++ LP + ++ +L +L + N+L LP KLTNL L++ +N ++ LPE
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNN--QLQSLPEG 175
Query: 390 TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
F +LT LK+L L++NQ+ ++P+ F RL L + L NP
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNNP 216
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 73/129 (56%), Gaps = 6/129 (4%)
Query: 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLP 363
LD N L LP + EL +L +L + NK++ LP + ++ SL +L+ N+L LP
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 364 -ATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKL 420
KLT L+ L +++N ++ LP+ F +LT LK+L L NQ+ ++P+ F RL L
Sbjct: 93 NGVFDKLTQLKELALNTN--QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150
Query: 421 IKLNLEENP 429
+ L +NP
Sbjct: 151 QYIWLHDNP 159
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 61/112 (54%), Gaps = 3/112 (2%)
Query: 276 LDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN 334
L +L L + GNKL +LP+ + + SL L+ S N+L LP + +L L++L + N
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 335 KIRFLPTSI-GEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDM 384
+++ LP + ++ L+ L + N+L +P +LT+L+ + + N D
Sbjct: 111 QLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 339 LPTSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPE-TFGELTN 396
+PT I A +LD N L LP +LT+L L + N ++ LP F +LT+
Sbjct: 22 VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN--KLQSLPNGVFNKLTS 77
Query: 397 LKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
L L+LS NQ+ +LPN F +L +L +L L N
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 292 LPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKIRF-LPTSIGEMASL 349
+P ++S+C LV L SFN L+ +P+++G L L+ L + LN + +P + + +L
Sbjct: 410 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTL 468
Query: 350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH 408
L FN+L G +P+ + TNL +++S+N E+P+ G L NL L LSNN
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFS 527
Query: 409 A-LPNTFGRLDKLIKLNLEEN 428
+P G LI L+L N
Sbjct: 528 GNIPAELGDCRSLIWLDLNTN 548
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 338 FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTN 396
++P IG M L L+ N++ G +P +G L L IL++SSN D + +P+ LT
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTM 705
Query: 397 LKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
L E+DLSNN + G+ + NP
Sbjct: 706 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 738
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/247 (27%), Positives = 103/247 (41%), Gaps = 66/247 (26%)
Query: 206 AGKSLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXX 262
SL +DLS L + G +GL+ +++S+N L+ P ++G
Sbjct: 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVSG---------- 146
Query: 263 XXXXXXXPDSIGL-LDNLKILDVSGNKLSA-------LPDSISHCRSLVELDASFNRLAY 314
GL L++L++LD+S N +S L D C L L S N+++
Sbjct: 147 -----------GLKLNSLEVLDLSANSISGANVVGWVLSDG---CGELKHLAISGNKISG 192
Query: 315 LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLE 373
++ VNL+ L V N +G+ ++L+HLD N+L G I T L+
Sbjct: 193 -DVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELK 250
Query: 374 ILNVSSN-----------------------FTDMKELPETF-GELTNLKELDLSNNQIH- 408
+LN+SSN FT E+P+ G L LDLS N +
Sbjct: 251 LLNISSNQFVGPIPPLPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 409 ALPNTFG 415
A+P FG
Sbjct: 309 AVPPFFG 315
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 270 PDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELDASFNRLA 313
PD +G L L ILD+S NKL +P ++S L E+D S N L+
Sbjct: 673 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 76/141 (53%), Gaps = 6/141 (4%)
Query: 292 LPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLNKIRF-LPTSIGEMASL 349
+P ++S+C LV L SFN L+ +P+++G L L+ L + LN + +P + + +L
Sbjct: 407 IPPTLSNCSELVSLHLSFNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTL 465
Query: 350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH 408
L FN+L G +P+ + TNL +++S+N E+P+ G L NL L LSNN
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFS 524
Query: 409 A-LPNTFGRLDKLIKLNLEEN 428
+P G LI L+L N
Sbjct: 525 GNIPAELGDCRSLIWLDLNTN 545
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 338 FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTN 396
++P IG M L L+ N++ G +P +G L L IL++SSN D + +P+ LT
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAMSALTM 702
Query: 397 LKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429
L E+DLSNN + G+ + NP
Sbjct: 703 LTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNP 735
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 67/244 (27%), Positives = 103/244 (42%), Gaps = 66/244 (27%)
Query: 209 SLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXX 265
SL +DLS L + G +GL+ +++S+N L+ P ++G
Sbjct: 98 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD-FPGKVSG------------- 143
Query: 266 XXXXPDSIGL-LDNLKILDVSGNKLSA-------LPDSISHCRSLVELDASFNRLAYLPT 317
GL L++L++LD+S N +S L D C L L S N+++
Sbjct: 144 --------GLKLNSLEVLDLSANSISGANVVGWVLSDG---CGELKHLAISGNKISG-DV 191
Query: 318 NIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILN 376
++ VNL+ L V N +G+ ++L+HLD N+L G I T L++LN
Sbjct: 192 DV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 250
Query: 377 VSSN-----------------------FTDMKELPETF-GELTNLKELDLSNNQIH-ALP 411
+SSN FT E+P+ G L LDLS N + A+P
Sbjct: 251 ISSNQFVGPIPPLPLKSLQYLSLAENKFT--GEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Query: 412 NTFG 415
FG
Sbjct: 309 PFFG 312
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 270 PDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELDASFNRLA 313
PD +G L L ILD+S NKL +P ++S L E+D S N L+
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 714
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 65/218 (29%), Positives = 91/218 (41%), Gaps = 41/218 (18%)
Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXXXX 269
L+ + + GL LP+ + AGL ++L+ N L +P SIA
Sbjct: 106 LQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIA------------------ 147
Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHE-LVNLQK 328
S N+L L SI C L EL LA + H+ LVNLQ
Sbjct: 148 ---------------SLNRLREL--SIRACPELTELPEP---LASTDASGEHQGLVNLQS 187
Query: 329 LLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
L + IR LP SI + +L+ L + L L I L LE L++ T ++ P
Sbjct: 188 LRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG-CTALRNYP 246
Query: 389 ETFGELTNLKELDLSN-NQIHALPNTFGRLDKLIKLNL 425
FG LK L L + + + LP RL +L KL+L
Sbjct: 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 10/117 (8%)
Query: 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT 382
L +LQ + + LP + + A L L N L LPA+I L L L++ +
Sbjct: 103 LSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA-CP 161
Query: 383 DMKELPETFGE---------LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
++ ELPE L NL+ L L I +LP + L L L + +P+
Sbjct: 162 ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 282 LDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
LD+ L+ L D + L L+ +N+L L + +L L L + N++ LP
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 341 TSIGEMASLRHLDAHF---NELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELT 395
+G L LD + N+L LP+ + +LT L+ L +++N ++ +P F +LT
Sbjct: 100 --LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLT 155
Query: 396 NLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
NL+ L LS NQ+ ++P+ F RL KL + L N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 79/154 (51%), Gaps = 11/154 (7%)
Query: 282 LDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
LD+ L+ L D + L L+ +N+L L + +L L L + N++ LP
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 341 TSIGEMASLRHLDAHF---NELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELT 395
+G L LD + N+L LP+ + +LT L+ L +++N ++ +P F +LT
Sbjct: 100 --LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN--QLQSIPAGAFDKLT 155
Query: 396 NLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
NL+ L LS NQ+ ++P+ F RL KL + L N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 280 KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR- 337
K +D+S N L L S S+ L LD S + + H L +L L++ N I+
Sbjct: 30 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 89
Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGELTN 396
F P S + SL +L A +L L + IG+L L+ LNV+ NF +LP F LTN
Sbjct: 90 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 149
Query: 397 LKELDLSNNQIHAL 410
L +DLS N I +
Sbjct: 150 LVHVDLSYNYIQTI 163
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Query: 276 LDNLKILDVSGNKLSALPDSISH----CRSLVELDASFNRLAYLPTNIG--HELVNLQKL 329
L +L LD+S N LS S+ SL LD SFN + N EL +L
Sbjct: 344 LPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 402
Query: 330 LVPLNKIRFLPTSIGEMASLRHLDAHF-NELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
L ++ ++ + L +LD + N LT+L L ++ N L
Sbjct: 403 HSTLKRVTEF-SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 461
Query: 389 ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
F TNL LDLS Q+ + F L +L LN+ N +
Sbjct: 462 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 504
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 67/134 (50%), Gaps = 3/134 (2%)
Query: 280 KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR- 337
K +D+S N L L S S+ L LD S + + H L +L L++ N I+
Sbjct: 35 KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS 94
Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGELTN 396
F P S + SL +L A +L L + IG+L L+ LNV+ NF +LP F LTN
Sbjct: 95 FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTN 154
Query: 397 LKELDLSNNQIHAL 410
L +DLS N I +
Sbjct: 155 LVHVDLSYNYIQTI 168
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 66/163 (40%), Gaps = 10/163 (6%)
Query: 276 LDNLKILDVSGNKLSALPDSISH----CRSLVELDASFNRLAYLPTNIG--HELVNLQKL 329
L +L LD+S N LS S+ SL LD SFN + N EL +L
Sbjct: 349 LPSLSYLDLSRNALS-FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407
Query: 330 LVPLNKIRFLPTSIGEMASLRHLDAHF-NELHGLPATIGKLTNLEILNVSSNFTDMKELP 388
L ++ ++ + L +LD + N LT+L L ++ N L
Sbjct: 408 HSTLKRVTEF-SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466
Query: 389 ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
F TNL LDLS Q+ + F L +L LN+ N +
Sbjct: 467 NVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/143 (32%), Positives = 70/143 (48%), Gaps = 28/143 (19%)
Query: 289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMAS 348
L+++P I + +EL++ N+L LP + +L L KL + N+I+ LP
Sbjct: 19 LTSVPTGIPSSATRLELES--NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP-------- 68
Query: 349 LRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQI 407
D F+ KLT L IL + N ++ LP F +LT LKEL L NQ+
Sbjct: 69 ----DGVFD----------KLTKLTILYLHEN--KLQSLPNGVFDKLTQLKELALDTNQL 112
Query: 408 HALPN-TFGRLDKLIKLNLEENP 429
++P+ F RL L K+ L NP
Sbjct: 113 KSVPDGIFDRLTSLQKIWLHTNP 135
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 384 MKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENPM 430
++ LP F +LT L +L LS NQI +LP+ F +L KL L L EN +
Sbjct: 40 LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 209 SLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
S +++L S L+ LP F ++ L +SLS N ++ +PD +
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV----------------- 71
Query: 268 XXPDSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNL 326
L L IL + NKL +LP+ + L EL N+L +P I L +L
Sbjct: 72 -----FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSL 126
Query: 327 QKLLVPLN 334
QK+ + N
Sbjct: 127 QKIWLHTN 134
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 5/123 (4%)
Query: 310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGE-MASLRHLDAHFNELHGLP-ATIG 367
N++ L + L+NL++L + N++ LP + + + L LD N+L LP A
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFD 109
Query: 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLE 426
+L +L+ L + N + ELP LT+L L L NQ+ ++P+ F RL L L
Sbjct: 110 RLVHLKELFMCCN--KLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167
Query: 427 ENP 429
NP
Sbjct: 168 GNP 170
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 270 PDSIGLLDNLKILDVSGNKLSALP----DSISHCRSLVELDASFNRLAYLPTNIGHELVN 325
P L NLK L + N+L ALP DS++ L LD N+L LP+ + LV+
Sbjct: 57 PGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ---LTVLDLGTNQLTVLPSAVFDRLVH 113
Query: 326 LQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP 363
L++L + NK+ LP I + L HL N+L +P
Sbjct: 114 LKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIP 151
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 10/142 (7%)
Query: 290 SALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMAS 348
+A P S S +D R A +P I N Q L + N+I L P + +
Sbjct: 11 AACPSQCS--CSGTTVDCRSKRHASVPAGIP---TNAQILYLHDNQITKLEPGVFDSLIN 65
Query: 349 LRHLDAHFNELHGLPATI-GKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQ 406
L+ L N+L LP + LT L +L++ +N + LP F L +LKEL + N+
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN--QLTVLPSAVFDRLVHLKELFMCCNK 123
Query: 407 IHALPNTFGRLDKLIKLNLEEN 428
+ LP RL L L L++N
Sbjct: 124 LTELPRGIERLTHLTHLALDQN 145
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
I S L+++P ++ ++ LD S NR+ Y+ + VNLQ L++ N I +
Sbjct: 35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE 92
Query: 341 T-SIGEMASLRHLDAHFNELHGLPATIGK-LTNLEILNVSSNFTDMKELPET--FGELTN 396
S + SL HLD +N L L ++ K L++L LN+ N K L ET F LT
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTK 150
Query: 397 LKELDLSN 404
L+ L + N
Sbjct: 151 LQILRVGN 158
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 21/141 (14%)
Query: 303 VELDASFNRLAYLPT------NIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDA-- 354
+E+DAS + +Y P N+ H ++++++ ++ L +I TS E LR D
Sbjct: 179 LEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQHILLL-EIFVDVTSSVECLELRDTDLDT 236
Query: 355 -HFNELHG--LPATIGKLT--NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA 409
HF+EL + I K T N++I + S F MK L +++ L EL+ S NQ+ +
Sbjct: 237 FHFSELSTGETNSLIKKFTFRNVKITD-ESLFQVMKLL----NQISGLLELEFSRNQLKS 291
Query: 410 LPN-TFGRLDKLIKLNLEENP 429
+P+ F RL L K+ L NP
Sbjct: 292 VPDGIFDRLTSLQKIWLHTNP 312
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 26 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 85
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L L+ + L P IG L L+ LNV+ N +L
Sbjct: 86 TGNPIQSLALGAFSGLSSLQKLVALETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 143
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 144 PEYFSNLTNLEHLDLSSNKIQSIYCT 169
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 85/188 (45%), Gaps = 43/188 (22%)
Query: 279 LKILDVSGNKLSALPD----SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL---V 331
L++LD+S ++ + D S+SH +L+ + N + L L +LQKL+
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVALET 112
Query: 332 PLNKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN------FTD 383
L + P IG + +L+ L+ N + LP LTNLE L++SSN TD
Sbjct: 113 NLASLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 170
Query: 384 MKEL---------------------PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLI 421
++ L P F E+ LKEL L NQ+ ++P+ F RL L
Sbjct: 171 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQ 229
Query: 422 KLNLEENP 429
K+ L NP
Sbjct: 230 KIWLHTNP 237
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 63/124 (50%), Gaps = 8/124 (6%)
Query: 285 SGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SI 343
S L+++P ++ ++ LD S NR+ Y+ + VNLQ L++ N I + S
Sbjct: 13 SSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 70
Query: 344 GEMASLRHLDAHFNELHGLPATIGK-LTNLEILNVSSNFTDMKELPET--FGELTNLKEL 400
+ SL HLD +N L L ++ K L++L LN+ N K L ET F LT L+ L
Sbjct: 71 SSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGN--PYKTLGETSLFSHLTKLQIL 128
Query: 401 DLSN 404
+ N
Sbjct: 129 RVGN 132
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 57/141 (40%), Gaps = 34/141 (24%)
Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
K+L +D+S +PE ++ ++LS+ + + I
Sbjct: 387 KNLTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRIHSVTGCI----------------- 429
Query: 268 XXPDSIGLLD--------------NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLA 313
P ++ +LD LK L +S NKL LPD+ S L+ L S N+L
Sbjct: 430 --PKTLEILDVSNNNLNLFSLNLPQLKELYISRNKLMTLPDA-SLLPMLLVLKISRNQLK 486
Query: 314 YLPTNIGHELVNLQKLLVPLN 334
+P I L +LQK+ + N
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTN 507
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 389 ETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
ET L NL +D+S N H++P T +K+ LNL
Sbjct: 381 ETLLTLKNLTNIDISKNSFHSMPETCQWPEKMKYLNL 417
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 26 DNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 85
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L ++ + L P IG L L+ LNV+ N +L
Sbjct: 86 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 143
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 144 PEYFSNLTNLEHLDLSSNKIQSIYCT 169
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 39/186 (20%)
Query: 279 LKILDVSGNKLSALPD----SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL-VPL 333
L++LD+S ++ + D S+SH +L+ + N + L L +LQKL+ V
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVET 112
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN------FTDMK 385
N IG + +L+ L+ N + LP LTNLE L++SSN TD++
Sbjct: 113 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 172
Query: 386 EL---------------------PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKL 423
L P F E+ LKEL L NQ+ ++P+ F RL L K+
Sbjct: 173 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 231
Query: 424 NLEENP 429
L NP
Sbjct: 232 WLHTNP 237
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 25 DNLPFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 84
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L ++ + L P IG L L+ LNV+ N +L
Sbjct: 85 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 142
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 143 PEYFSNLTNLEHLDLSSNKIQSIYCT 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 39/186 (20%)
Query: 279 LKILDVSGNKLSALPD----SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL-VPL 333
L++LD+S ++ + D S+SH +L+ + N + L L +LQKL+ V
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN------FTDMK 385
N IG + +L+ L+ N + LP LTNLE L++SSN TD++
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 386 EL---------------------PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKL 423
L P F E+ LKEL L NQ+ ++P+ F RL L K+
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 230
Query: 424 NLEENP 429
L NP
Sbjct: 231 WLHTNP 236
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 357 NELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGR 416
N L LPA I L+NL +L++S N + LP G LK +N + LP FG
Sbjct: 257 NSLTELPAEIKNLSNLRVLDLSHN--RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN 314
Query: 417 LDKLIKLNLEENPM 430
L L L +E NP+
Sbjct: 315 LCNLQFLGVEGNPL 328
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 47/105 (44%), Gaps = 9/105 (8%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335
L NL+I ++S N I L L + N L LP I + L NL+ L + N+
Sbjct: 231 LSNLQIFNISAN--------IFKYDFLTRLYLNGNSLTELPAEIKN-LSNLRVLDLSHNR 281
Query: 336 IRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380
+ LP +G L++ N + LP G L NL+ L V N
Sbjct: 282 LTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN 326
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Query: 272 SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
+I D L L ++GN L+ LP I + +L LD S NRL LP +G L+
Sbjct: 242 NIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLKYFYF 300
Query: 332 PLNKIRFLPTSIGEMASLRHLDAHFNEL 359
N + LP G + +L+ L N L
Sbjct: 301 FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 270 PDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
P I L NL++LD+S N+L++LP + C L N + LP G+ L NLQ L
Sbjct: 263 PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN-LCNLQFL 321
Query: 330 LV---PLNK 335
V PL K
Sbjct: 322 GVEGNPLEK 330
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 369 LTNLEILNVSSNF-------------TDMKELPETFGELTNLKELDLSNNQIHALPNTFG 415
L+NL+I N+S+N + ELP L+NL+ LDLS+N++ +LP G
Sbjct: 231 LSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290
Query: 416 RLDKLIKLNLEEN 428
+L +N
Sbjct: 291 SCFQLKYFYFFDN 303
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGL-P 363
D S +L ++P ++ N+ L + N++R LP T+ + L LDA FN + L P
Sbjct: 10 DCSHLKLTHIPDDLPS---NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEP 66
Query: 364 ATIGKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLI 421
L L++LN+ N ++ ++ +TF TNL ELDL +N IH + N F LI
Sbjct: 67 ELCQILPLLKVLNLQHN--ELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLI 124
Query: 422 KLNLEENPM 430
KL+L N +
Sbjct: 125 KLDLSHNGL 133
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 85/185 (45%), Gaps = 34/185 (18%)
Query: 278 NLKILDVSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI 336
NL LD+ N + + + + ++L++LD S N L+ G +L NLQ+LL+ NKI
Sbjct: 98 NLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKI 157
Query: 337 RFLPTSIGEM---ASLRHLDAHFNELH----GLPATIGK--------------------- 368
L + E +SLR LD N L G TIGK
Sbjct: 158 LALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTEKLCW 217
Query: 369 -LTNLEILNVS-SNFTDMKELPETFGEL--TNLKELDLSNNQIHALPN-TFGRLDKLIKL 423
L+N I N+S +N + TF L TNL +LDLS N +H + N +F L L L
Sbjct: 218 ELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYL 277
Query: 424 NLEEN 428
+LE N
Sbjct: 278 SLEYN 282
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L ++ + L P IG L L+ LNV+ N +L
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 141
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 39/186 (20%)
Query: 279 LKILDVSGNKLSALPD----SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL-VPL 333
L++LD+S ++ + D S+SH +L+ + N + L L +LQKL+ V
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVET 110
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN------FTDMK 385
N IG + +L+ L+ N + LP LTNLE L++SSN TD++
Sbjct: 111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 170
Query: 386 EL---------------------PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKL 423
L P F E+ LKEL L NQ+ ++P+ F RL L K+
Sbjct: 171 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 229
Query: 424 NLEENP 429
L NP
Sbjct: 230 WLHTNP 235
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 25 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 84
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L ++ + L P IG L L+ LNV+ N +L
Sbjct: 85 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 142
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 143 PEYFSNLTNLEHLDLSSNKIQSIYCT 168
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/186 (30%), Positives = 84/186 (45%), Gaps = 39/186 (20%)
Query: 279 LKILDVSGNKLSALPD----SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL-VPL 333
L++LD+S ++ + D S+SH +L+ + N + L L +LQKL+ V
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLI---LTGNPIQSLALGAFSGLSSLQKLVAVET 111
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSN------FTDMK 385
N IG + +L+ L+ N + LP LTNLE L++SSN TD++
Sbjct: 112 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR 171
Query: 386 EL---------------------PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKL 423
L P F E+ LKEL L NQ+ ++P+ F RL L K+
Sbjct: 172 VLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLKELALDTNQLKSVPDGIFDRLTSLQKI 230
Query: 424 NLEENP 429
L NP
Sbjct: 231 WLHTNP 236
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 86/156 (55%), Gaps = 11/156 (7%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELVNLQKLLVPLN 334
L NL L++S N +S + ++S SL +L+ S N++ L P L L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLNFSSNQVTDLKPL---ANLTTLERLDISSN 183
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
K+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T L
Sbjct: 184 KVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASL 238
Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
TNL +LDL+NNQI L G L KL +L L N +
Sbjct: 239 TNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 273
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
N+++ LP P + LE L++++N D+ ELP
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--DLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
L NL L L N ++ +P F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 79/169 (46%), Gaps = 22/169 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
L +L+ LD+S N LS S SL LD SFN + + +N + L++L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN----FLGLEQL--- 398
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
+ F +++ +M+ SLR +LD +H + L++LE+L ++ N
Sbjct: 399 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPM 430
LP+ F EL NL LDLS Q+ L P F L L LN+ N +
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 24 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L ++ + L P IG L L+ LNV+ N +L
Sbjct: 84 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 141
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCT 167
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 270 PDSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQK 328
PD L NL LD+S +L L P + + SL L+ + N+L +P I L +LQK
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQK 522
Query: 329 LLVPLN 334
+ + N
Sbjct: 523 IWLHTN 528
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 24/90 (26%)
Query: 209 SLEQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXX 266
SLE + ++ + FLP+ F + L + LS LE +
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS------------------- 486
Query: 267 XXXPDSIGLLDNLKILDVSGNKLSALPDSI 296
P + L +L++L+++ N+L ++PD I
Sbjct: 487 ---PTAFNSLSSLQVLNMASNQLKSVPDGI 513
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF 338
L+ L+VSGN+L++LP L+EL N L +LP L KL + N++
Sbjct: 83 LRTLEVSGNQLTSLP---VLPPGLLELSIFSNPLTHLPALPS----GLCKLWIFGNQLTS 135
Query: 339 LPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLK 398
LP L+ L N+L LPA +L L N + T + LP + L+
Sbjct: 136 LPVLP---PGLQELSVSDNQLASLPALPSELCKLWAYN--NQLTSLPMLP------SGLQ 184
Query: 399 ELDLSNNQIHALPNTFGRLDKLIKLN 424
EL +S+NQ+ +LP L KL N
Sbjct: 185 ELSVSDNQLASLPTLPSELYKLWAYN 210
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 73/166 (43%), Gaps = 26/166 (15%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF 338
L+ L VS N+L++LP S L + L LP+ LQ+L V N++
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSG-------LQELSVSDNQLAS 195
Query: 339 LPTSIGEMASLRHLDAHFNELHGLPATI-------GKLTNLEILNVSSNFTDMKELPETF 391
LPT E+ L + L LP+ + +LT+L +L +++KEL +
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLP-----SELKELMVSG 250
Query: 392 GELTNLK-------ELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
LT+L L + NQ+ LP + L +NLE NP+
Sbjct: 251 NRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL 296
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 59/133 (44%), Gaps = 15/133 (11%)
Query: 275 LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN 334
L L+ L VS N+L++LP S L +L A NRL LP L++L+V N
Sbjct: 179 LPSGLQELSVSDNQLASLPTLPSE---LYKLWAYNNRLTSLPALPS----GLKELIVSGN 231
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
++ LP E L+ L N L LP L +L + + LPE+ L
Sbjct: 232 RLTSLPVLPSE---LKELMVSGNRLTSLPMLPSGLLSLSVYR-----NQLTRLPESLIHL 283
Query: 395 TNLKELDLSNNQI 407
++ ++L N +
Sbjct: 284 SSETTVNLEGNPL 296
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELVNLQKLLVPLN 334
L NL L++S N +S + ++S SL +L S N++ L P L L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL---ANLTTLERLDISSN 183
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
K+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T L
Sbjct: 184 KVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASL 238
Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
TNL +LDL+NNQI L G L KL +L L N +
Sbjct: 239 TNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 273
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 85/156 (54%), Gaps = 11/156 (7%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYL-PTNIGHELVNLQKLLVPLN 334
L NL L++S N +S + ++S SL +L S N++ L P L L++L + N
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLSFSSNQVTDLKPL---ANLTTLERLDISSN 183
Query: 335 KIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
K+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T L
Sbjct: 184 KVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASL 238
Query: 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
TNL +LDL+NNQI L G L KL +L L N +
Sbjct: 239 TNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 273
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 77/136 (56%), Gaps = 24/136 (17%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHEL-VNLQKLLVPLNKIR 337
+ +L+++ N L +LP+ + SL LDA NRL+ LP EL +L+ L V N++
Sbjct: 82 ITVLEITQNALISLPELPA---SLEYLDACDNRLSTLP-----ELPASLKHLDVDNNQLT 133
Query: 338 FLPTSIGEM-ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN-FTDMKELPETFGELT 395
LP E+ A L +++A N+L LP T+LE+L+V +N T + ELPE+
Sbjct: 134 XLP----ELPALLEYINADNNQLTXLPELP---TSLEVLSVRNNQLTFLPELPES----- 181
Query: 396 NLKELDLSNNQIHALP 411
L+ LD+S N + +LP
Sbjct: 182 -LEALDVSTNLLESLP 196
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 14/100 (14%)
Query: 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTN 371
L+ LP N+ ++ L+ L + LP ASL +LDA N L LP L +
Sbjct: 71 LSSLPDNLPPQITVLEITQNALISLPELP------ASLEYLDACDNRLSTLPELPASLKH 124
Query: 372 LEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
L++ N + T + ELP L+ ++ NNQ+ LP
Sbjct: 125 LDVDN--NQLTXLPELPAL------LEYINADNNQLTXLP 156
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 68/146 (46%), Gaps = 11/146 (7%)
Query: 277 DNL----KILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331
DNL K LD+S N L L S L LD S + + L +L L++
Sbjct: 48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 107
Query: 332 PLNKIRFLP----TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387
N I+ L + + + L ++ + L P IG L L+ LNV+ N +L
Sbjct: 108 TGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNVAHNLIQSFKL 165
Query: 388 PETFGELTNLKELDLSNNQIHALPNT 413
PE F LTNL+ LDLS+N+I ++ T
Sbjct: 166 PEYFSNLTNLEHLDLSSNKIQSIYCT 191
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
L +L+ LD+S N LS S SL LD SFN + + +N + L++L
Sbjct: 370 LPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN----FLGLEQL--- 422
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
+ F +++ +M+ SLR +LD +H + L++LE+L ++ N
Sbjct: 423 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 481
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
LP+ F EL NL LDLS Q+ L P F L L LN+ N
Sbjct: 482 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 528
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH----ELVNLQKLLVPLNKI 336
+ D +++P ++ ++ LD SFN++ Y IGH NLQ L++ ++I
Sbjct: 9 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRI 62
Query: 337 RFLP-TSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGEL 394
+ + + SL HLD N L L ++ G L++L+ LN+ N + F L
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122
Query: 395 TNLKELDLSN 404
TNL+ L + N
Sbjct: 123 TNLQTLRIGN 132
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 11/96 (11%)
Query: 341 TSI--GEMASLRHLDAHFNEL----HGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
TSI G A+++ LD FN++ HG + NL++L + S+ + E + F L
Sbjct: 18 TSIPSGLTAAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIE-GDAFYSL 73
Query: 395 TNLKELDLSNNQIHALPNT-FGRLDKLIKLNLEENP 429
+L+ LDLS+N + +L ++ FG L L LNL NP
Sbjct: 74 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGE-MASLRHLDAHFN----ELHGLPATI 366
L Y + + L ++++ V +K+ +P S + + SL LD N E A
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357
Query: 367 GKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
G +L+ L +S N M++ E L NL LD+S N H +P++ +K+ LNL
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 417
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
K+L +D+S +P++ +R ++LS+ + V+ I
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL--- 443
Query: 268 XXPDSIGL-LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
DS L L L+ L +S NKL LPD+ S L+ + S N+L +P I L +L
Sbjct: 444 ---DSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499
Query: 327 QKLLVPLN 334
QK+ + N
Sbjct: 500 QKIWLHTN 507
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/167 (31%), Positives = 78/167 (46%), Gaps = 22/167 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
L +L+ LD+S N LS S SL LD SFN + + +N + L++L
Sbjct: 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQL--- 398
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
+ F +++ +M+ SLR +LD +H + L++LE+L ++ N
Sbjct: 399 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
LP+ F EL NL LDLS Q+ L P F L L LN+ N
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT 413
IG L L+ LNV+ N +LPE F LTNL+ LDLS+N+I ++ T
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 63/130 (48%), Gaps = 12/130 (9%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH----ELVNLQKLLVPLNKI 336
+ D +++P ++ ++ LD SFN++ Y IGH NLQ L++ ++I
Sbjct: 35 VCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRI 88
Query: 337 RFLP-TSIGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGEL 394
+ + + SL HLD N L L ++ G L++L+ LN+ N + F L
Sbjct: 89 NTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 148
Query: 395 TNLKELDLSN 404
TNL+ L + N
Sbjct: 149 TNLQTLRIGN 158
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 11/96 (11%)
Query: 341 TSI--GEMASLRHLDAHFNEL----HGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
TSI G A+++ LD FN++ HG + NL++L + S+ + E + F L
Sbjct: 44 TSIPSGLTAAMKSLDLSFNKITYIGHG---DLRACANLQVLILKSSRINTIE-GDAFYSL 99
Query: 395 TNLKELDLSNNQIHALPNT-FGRLDKLIKLNLEENP 429
+L+ LDLS+N + +L ++ FG L L LNL NP
Sbjct: 100 GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 135
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 6/120 (5%)
Query: 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGE-MASLRHLDAHFN----ELHGLPATI 366
L Y + + L ++++ V +K+ +P S + + SL LD N E A
Sbjct: 324 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 383
Query: 367 GKLTNLEILNVSSN-FTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNL 425
G +L+ L +S N M++ E L NL LD+S N H +P++ +K+ LNL
Sbjct: 384 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNL 443
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 8/128 (6%)
Query: 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
K+L +D+S +P++ +R ++LS+ + V+ I
Sbjct: 413 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL--- 469
Query: 268 XXPDSIGL-LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326
DS L L L+ L +S NKL LPD+ S L+ + + N+L +P I L +L
Sbjct: 470 ---DSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKIASNQLKSVPDGIFDRLTSL 525
Query: 327 QKLLVPLN 334
QK+ + N
Sbjct: 526 QKIWLHTN 533
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
N+++ LP + L L N+L LPA + L NL+ L + N + +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFG 392
N+++ LP + +L LD FN L LP + L L+ L + N ++K LP G
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPP--G 142
Query: 393 ELT---NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
LT L++L L+NNQ+ LP L+ L L L+EN +
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 72/179 (40%), Gaps = 34/179 (18%)
Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGXXXXXXXXXXXXXXXX 268
L +DLS L+ LP + L ++ +S N L +P ++ G
Sbjct: 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG---------------- 122
Query: 269 XPDSIGLLDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
L L+ L + GN+L LP + + L +L + N+L LP + + L NL
Sbjct: 123 -------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLD 175
Query: 328 KLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKE 386
LL+ N + +P G S HL F LHG P L N EIL D E
Sbjct: 176 TLLLQENSLYTIPK--GFFGS--HL-LPFAFLHGNPW----LCNCEILYFRRWLQDNAE 225
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
N+++ LP + L L N+L LPA + L NL+ L + N + +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFG 392
N+++ LP + +L LD FN L LP + L L+ L + N ++K LP G
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPP--G 142
Query: 393 ELT---NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
LT L++L L+NNQ+ LP L+ L L L+EN +
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
N+++ LP P + LE L++++N ++ ELP
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
L NL L L N ++ +P F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
N+++ LP + L L N+L LPA + L NL+ L + N + +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 51/100 (51%), Gaps = 9/100 (9%)
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFG 392
N+++ LP + +L LD FN L LP + L L+ L + N ++K LP G
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPP--G 142
Query: 393 ELT---NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
LT L++L L+NNQ+ LP L+ L L L+EN
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN 182
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
N+++ LP P + LE L++++N ++ ELP
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
L NL L L N ++ +P F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
N+++ LP P + LE L++++N ++ ELP
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
L NL L L N ++ +P F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 4/120 (3%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETF 391
N+++ LP + L L N+L LPA + L NL+ L + N + +P+ F
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQEN--SLYTIPKGF 191
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFG 392
N+++ LP + +L LD FN L LP + L L+ L + N ++K LP G
Sbjct: 87 NQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN--ELKTLPP--G 142
Query: 393 ELT---NLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
LT L++L L+NNQ+ LP L+ L L L+EN +
Sbjct: 143 LLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 323 LVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN 380
L L++ ++ +P ++ +M +L HL+ N + +P+ + L NLE + SN
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSN 180
Query: 381 FTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
++++P FG++ LK+L+L++NQ+ ++P+ F RL L K+ L NP
Sbjct: 181 --KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNP 229
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 17/89 (19%)
Query: 355 HFNELHGLPATIGKLTNLEILNVSSNF-TDMK------------ELP-ETFGELTNLKEL 400
H + LHGL + T + ++ +N TDM+ E+P F +L NL+ +
Sbjct: 118 HLDRLHGLKRF--RFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHLFDDLENLESI 175
Query: 401 DLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
+ +N++ +P FG++ KL +LNL N
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASN 204
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 60/108 (55%), Gaps = 4/108 (3%)
Query: 276 LDNLKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN 334
L LK + +L+ +P ++ + R+L L+ N + +P+++ +L NL+ + N
Sbjct: 122 LHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRAN-IEEMPSHLFDDLENLESIEFGSN 180
Query: 335 KIRFLPTSI-GEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN 380
K+R +P I G+M L+ L+ N+L +P I +LT+L+ + + +N
Sbjct: 181 KLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 208 KSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIPDSI 250
++LE ++ S LR +P FG++ L+ ++L++N L+ +PD I
Sbjct: 170 ENLESIEFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGI 213
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 75 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 134
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
N+++ LP P + LE L++++N ++ ELP
Sbjct: 135 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 170
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
L NL L L N ++ +P F
Sbjct: 171 GLENLDTLLLQENSLYTIPKGF 192
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/142 (30%), Positives = 62/142 (43%), Gaps = 25/142 (17%)
Query: 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL 333
G L L LD+S N+L +LP +L LD SFNRL LP L LQ+L +
Sbjct: 74 GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFG 392
N+++ LP P + LE L++++N ++ ELP
Sbjct: 134 NELKTLP----------------------PGLLTPTPKLEKLSLANN--NLTELPAGLLN 169
Query: 393 ELTNLKELDLSNNQIHALPNTF 414
L NL L L N ++ +P F
Sbjct: 170 GLENLDTLLLQENSLYTIPKGF 191
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 75/167 (44%), Gaps = 22/167 (13%)
Query: 276 LDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
L L L +S N LS S SL LD SFN + + +N + L++L
Sbjct: 51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF----LGLEQL--- 103
Query: 333 LNKIRFLPTSIGEMA------SLR---HLD-AHFNELHGLPATIGKLTNLEILNVSSNFT 382
+ F +++ +M+ SLR +LD +H + L++LE+L ++ N
Sbjct: 104 -EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 383 DMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEEN 428
LP+ F EL NL LDLS Q+ L P F L L LN+ N
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/114 (36%), Positives = 57/114 (50%), Gaps = 8/114 (7%)
Query: 280 KILDVSGNKLSAL--PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337
K L +S N +S L PD IS L L S NR+ L ++ +L+ L V N+++
Sbjct: 55 KALSLSQNSISELRMPD-ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ 113
Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPAT--IGKLTNLEILNVS-SNFTDMKELP 388
+ S MASLRHLD FN+ LP G LT L L +S + F + LP
Sbjct: 114 NI--SCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLP 165
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
+K+LD+ N++ ++P ++H ++L EL+ + N+L +P + L +LQ +
Sbjct: 452 VKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYI 502
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 54/113 (47%), Gaps = 14/113 (12%)
Query: 326 LQKLLVPLNKIR-FLPTSI--GEMASLRHLDAHFNEL--HGLPATIGKLTNLEILNVSSN 380
LQ L++ N ++ F ++ M+SL LD N L H T ++ +LN+SSN
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438
Query: 381 F---TDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
+ + LP +K LDL NN+I ++P L L +LN+ N +
Sbjct: 439 MLTGSVFRCLPP------KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQL 485
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASF-NRLAYL-PTNIGHELVNLQKLLVPL 333
L NL L++S N +S + ++S SL +L SF N++ L P L L++L +
Sbjct: 132 LTNLNRLELSSNTISDI-SALSGLTSLQQL--SFGNQVTDLKPL---ANLTTLERLDISS 185
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGE 393
NK+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T
Sbjct: 186 NKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLAS 240
Query: 394 LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
LTNL +LDL+NNQI L G L KL +L L N +
Sbjct: 241 LTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 276
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335
L NL L++S N +S + ++S SL +L+ P L L++L + NK
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDLKPL---ANLTTLERLDISSNK 183
Query: 336 IRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELT 395
+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T LT
Sbjct: 184 VSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASLT 238
Query: 396 NLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
NL +LDL+NNQI L G L KL +L L N +
Sbjct: 239 NLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 272
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 86/157 (54%), Gaps = 14/157 (8%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASF-NRLAYL-PTNIGHELVNLQKLLVPL 333
L NL L++S N +S + ++S SL +L SF N++ L P L L++L +
Sbjct: 133 LTNLNRLELSSNTISDI-SALSGLTSLQQL--SFGNQVTDLKPL---ANLTTLERLDISS 186
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGE 393
NK+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T
Sbjct: 187 NKVSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLAS 241
Query: 394 LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
LTNL +LDL+NNQI L G L KL +L L N +
Sbjct: 242 LTNLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 277
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 81/155 (52%), Gaps = 10/155 (6%)
Query: 276 LDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335
L NL L++S N +S + ++S SL +L+ P L L++L + NK
Sbjct: 128 LTNLNRLELSSNTISDI-SALSGLTSLQQLNFGNQVTDLKPL---ANLTTLERLDISSNK 183
Query: 336 IRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELT 395
+ + + ++ +L L A N++ + +G LTNL+ L+++ N +K++ T LT
Sbjct: 184 VSDISV-LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGN--QLKDI-GTLASLT 238
Query: 396 NLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
NL +LDL+NNQI L G L KL +L L N +
Sbjct: 239 NLTDLDLANNQISNLAPLSG-LTKLTELKLGANQI 272
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 30/187 (16%)
Query: 270 PDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQ 327
P +I L L L ++ +S A+PD +S ++LV LD S+N L+ LP +I L NL
Sbjct: 94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-SSLPNLV 152
Query: 328 KLLVPLNKIR-FLPTSIGEMASL-RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTD- 383
+ N+I +P S G + L + N L G +P T L NL +++S N +
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Query: 384 ------------------MKELPETFGEL---TNLKELDLSNNQIHA-LPNTFGRLDKLI 421
L G++ NL LDL NN+I+ LP +L L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 422 KLNLEEN 428
LN+ N
Sbjct: 272 SLNVSFN 278
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 2/101 (1%)
Query: 282 LDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-P 340
L + GN+ + +P +S+ + L +D S NR++ L + L L++ N++R + P
Sbjct: 36 LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95
Query: 341 TSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSN 380
+ + SLR L H N++ +P L+ L L + +N
Sbjct: 96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 82/186 (44%), Gaps = 42/186 (22%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLA-----YLPTNIGHELVNLQKLLVPLNK 335
IL S +L +P S+ +L LD S N L+ + PT L NL LL+ N
Sbjct: 22 ILSCSKQQLPNVPQSLPSYTAL--LDLSHNNLSRLRAEWTPT----RLTNLHSLLLSHNH 75
Query: 336 IRFLPT-SIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN---------FTDM 384
+ F+ + + + +LR+LD N LH L + L LE+L + +N F DM
Sbjct: 76 LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM 135
Query: 385 KELPETF-----------------GELTNLKELDLSNNQIHALPNT-FGRLDKLIK--LN 424
+L + + +L L LDLS+N++ LP T +L +K L
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195
Query: 425 LEENPM 430
L NP+
Sbjct: 196 LHNNPL 201
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 38.1 bits (87), Expect = 0.011, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 388 PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
P F LT L LDL NNQ+ LP F +L +L +L+L +N +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 29.6 bits (65), Expect = 3.8, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 274 GLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
G+ ++L + N+++ L P L LD N+L LP + +L L +L +
Sbjct: 27 GIPTTTQVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 333 LNKIRFLPT-SIGEMASLRHL 352
N+++ +P + + SL H+
Sbjct: 87 DNQLKSIPRGAFDNLRSLTHI 107
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 388 PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPM 430
P F LT L LDL NNQ+ LP F +L +L +L+L +N +
Sbjct: 47 PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 274 GLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332
G+ ++L + N+++ L P L LD N+L LP + +L L +L +
Sbjct: 27 GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86
Query: 333 LNKIRFLPT-SIGEMASLRHL 352
N+++ +P + + SL H+
Sbjct: 87 DNQLKSIPRGAFDNLKSLTHI 107
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 352 LDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411
+D L +P G T ++L + N E P F LT L LDL NNQ+ LP
Sbjct: 22 VDCSGKSLASVPT--GIPTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLP 78
Query: 412 -NTFGRLDKLIKLNLEEN 428
F +L +L +L+L +N
Sbjct: 79 AGVFDKLTQLTQLSLNDN 96
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 5/92 (5%)
Query: 326 LQKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
+Q + + N ++ P TS+ + L L+ +N+L G G L LN++ N
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIKLASLNLAYN--Q 364
Query: 384 MKELPETFGELT-NLKELDLSNNQIHALPNTF 414
+ E+P F T ++ L ++N++ +PN F
Sbjct: 365 ITEIPANFCGFTEQVENLSFAHNKLKYIPNIF 396
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 29/132 (21%), Positives = 54/132 (40%), Gaps = 20/132 (15%)
Query: 302 LVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT--SIGEMASLRHLDAHFNEL 359
L L+ ++N++ +P N ++ L NK++++P ++ +D +NE+
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVXSAIDFSYNEI 414
Query: 360 HGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNT-FGRLD 418
+ NF + P F + N+ ++LSNNQI P F
Sbjct: 415 GSVDG--------------KNFDPLD--PTPFKGI-NVSSINLSNNQISKFPKELFSTGS 457
Query: 419 KLIKLNLEENPM 430
L +NL N +
Sbjct: 458 PLSSINLXGNXL 469
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 210 LEQVDLSS--RGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
LE+ DLSS RG+ F L +S+SNN+LE I D
Sbjct: 130 LERNDLSSLPRGI------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 183
Query: 268 XXPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
D + L+ +L +VS N LS L I+ + ELDAS N + N+ VN++
Sbjct: 184 THVD-LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSI-----NVVRGPVNVE 233
Query: 328 KLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMK 385
++ L T+ + L +D +NEL + K+ LE L +S+N
Sbjct: 234 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 293
Query: 386 ELPETFGE-LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
L +G+ + LK LDLS+N + + + D+L L L+ N +
Sbjct: 294 NL---YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 336
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 82/168 (48%), Gaps = 29/168 (17%)
Query: 278 NLKILDVSGNKLSAL--PDSISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPLN 334
N+K VSG ++ + P IS + LD S N L + N GH L L+ L++ +N
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKIS---PFLHLDFSNNLLTDTVFENCGH-LTELETLILQMN 358
Query: 335 KIRFLPTSIGEMA----SLRHLD-----AHFNELHGLPATIGKLTNLEILNVSSNF---T 382
+++ L + I EM SL+ LD ++E G + L +L N+SSN T
Sbjct: 359 QLKEL-SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL---NMSSNILTDT 414
Query: 383 DMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
+ LP +K LDL +N+I ++P +L+ L +LN+ N +
Sbjct: 415 IFRCLPP------RIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQL 456
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 66/128 (51%), Gaps = 5/128 (3%)
Query: 281 ILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340
++D S N L +P +S ++ L+ S N ++ L T+ L L+ L++ N+I++L
Sbjct: 4 LVDRSKNGLIHVPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 341 TSIGEM-ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE 399
S+ + L +LD N+L + + NL+ L++S N D + + FG ++ LK
Sbjct: 62 ISVFKFNQELEYLDLSHNKL--VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 400 LDLSNNQI 407
L LS +
Sbjct: 120 LGLSTTHL 127
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN 334
+K+LD+ NK+ ++P + +L EL+ + N+L +P I L +LQK+ + N
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 72/148 (48%), Gaps = 24/148 (16%)
Query: 271 DSIGLLDNLKILDVSGNKL---SALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
++ G L L+ L + N+L S + + + +SL +LD S N ++Y + +
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY---DEKKGDCSWT 398
Query: 328 KLLVPLNK---------IRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVS 378
K L+ LN R LP I + LD H N++ +P + KL L+ LNV+
Sbjct: 399 KSLLSLNMSSNILTDTIFRCLPPRI------KVLDLHSNKIKSIPKQVVKLEALQELNVA 452
Query: 379 SNFTDMKELPE-TFGELTNLKELDLSNN 405
SN +K +P+ F LT+L+++ L N
Sbjct: 453 SN--QLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLP 363
+D S N L ++P ++ + L + N I L TS I ++ LR L N + L
Sbjct: 5 VDRSKNGLIHVPKDLSQKTTILN---ISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61
Query: 364 ATIGKLTN-LEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKL 420
++ K LE L++S N K + + NLK LDLS N ALP FG + +L
Sbjct: 62 ISVFKFNQELEYLDLSHN----KLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 421 IKLNL 425
L L
Sbjct: 118 KFLGL 122
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 27/227 (11%)
Query: 206 AGKSLEQVDLSSRGLR-FLPEAF---GRIAGLRL--MSLSNNHLEVIPDSIAGXXXXXXX 259
A SL++++LSS ++ F P F GR+ GL L + L + E + +A
Sbjct: 174 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 233
Query: 260 XXXXXXXXXXPDS-IGL-LDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLP 316
+ +GL NL +LD+S N L+ + DS + L +N + +L
Sbjct: 234 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 293
Query: 317 TNIGHELVNLQKL------------LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA 364
++ H L N++ L L L KI S + L HL+ N++ G+ +
Sbjct: 294 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKID--DFSFQWLKCLEHLNMEDNDIPGIKS 351
Query: 365 TIGK-LTNLEILNVSSNFTDMKELP-ETFGELTN--LKELDLSNNQI 407
+ L NL+ L++S++FT ++ L ETF L + L L+L+ N+I
Sbjct: 352 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 398
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 369 LTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLE 426
L++L ILN+ SN D E+P E F +L LK +DL N ++ LP + F L LNL+
Sbjct: 540 LSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 597
Query: 427 EN 428
+N
Sbjct: 598 KN 599
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 27/227 (11%)
Query: 206 AGKSLEQVDLSSRGLR-FLPEAF---GRIAGLRL--MSLSNNHLEVIPDSIAGXXXXXXX 259
A SL++++LSS ++ F P F GR+ GL L + L + E + +A
Sbjct: 179 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 238
Query: 260 XXXXXXXXXXPDS-IGL-LDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLP 316
+ +GL NL +LD+S N L+ + DS + L +N + +L
Sbjct: 239 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 298
Query: 317 TNIGHELVNLQKL------------LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA 364
++ H L N++ L L L KI S + L HL+ N++ G+ +
Sbjct: 299 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKID--DFSFQWLKCLEHLNMEDNDIPGIKS 356
Query: 365 TIGK-LTNLEILNVSSNFTDMKELP-ETFGELTN--LKELDLSNNQI 407
+ L NL+ L++S++FT ++ L ETF L + L L+L+ N+I
Sbjct: 357 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 403
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 369 LTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLE 426
L++L ILN+ SN D E+P E F +L LK +DL N ++ LP + F L LNL+
Sbjct: 545 LSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 602
Query: 427 EN 428
+N
Sbjct: 603 KN 604
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 105/227 (46%), Gaps = 27/227 (11%)
Query: 206 AGKSLEQVDLSSRGLR-FLPEAF---GRIAGLRL--MSLSNNHLEVIPDSIAGXXXXXXX 259
A SL++++LSS ++ F P F GR+ GL L + L + E + +A
Sbjct: 169 ANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLS 228
Query: 260 XXXXXXXXXXPDS-IGL-LDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLP 316
+ +GL NL +LD+S N L+ + DS + L +N + +L
Sbjct: 229 LSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF 288
Query: 317 TNIGHELVNLQKL------------LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA 364
++ H L N++ L L L KI S + L HL+ N++ G+ +
Sbjct: 289 SHSLHGLFNVRYLNLKRSFTKQSISLASLPKID--DFSFQWLKCLEHLNMEDNDIPGIKS 346
Query: 365 TIGK-LTNLEILNVSSNFTDMKELP-ETFGELTN--LKELDLSNNQI 407
+ L NL+ L++S++FT ++ L ETF L + L L+L+ N+I
Sbjct: 347 NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 369 LTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLE 426
L++L ILN+ SN D E+P E F +L LK +DL N ++ LP + F L LNL+
Sbjct: 535 LSHLHILNLESNGFD--EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592
Query: 427 EN 428
+N
Sbjct: 593 KN 594
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 12/65 (18%)
Query: 377 VSSNFTDMKELP-----------ETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLN 424
V S+FTD+++L F LT+LKEL L NQ+ ++P+ F RL L K+
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLTSLQKIW 353
Query: 425 LEENP 429
L NP
Sbjct: 354 LHTNP 358
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 82/197 (41%), Gaps = 62/197 (31%)
Query: 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV------P 332
LKI+DV N L LPD SL + A N+L LP EL NL L
Sbjct: 155 LKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELP-----ELQNLPFLTAIYADNNS 206
Query: 333 LNKIRFLPTSIGEMASLRHLDAHFNELHGLP--ATIGKLTNL-----------EILNVSS 379
L K+ LP S+ + + ++ EL LP TI NL E LNV
Sbjct: 207 LKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRD 266
Query: 380 NF-TDMKELPE--TFGELT--------------------------------NLKELDLSN 404
N+ TD+ ELP+ TF +++ +L+EL++SN
Sbjct: 267 NYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSN 326
Query: 405 NQIHALPNTFGRLDKLI 421
N++ LP RL++LI
Sbjct: 327 NKLIELPALPPRLERLI 343
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 12/153 (7%)
Query: 284 VSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-KIRFL-P 340
+ GN++S +P S CR+L L N LA + L L++L + N ++R + P
Sbjct: 38 LHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDP 97
Query: 341 TSIGEMASLR--HLD-AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTN 396
T+ + L HLD EL P L L+ L + N +++ LP+ TF +L N
Sbjct: 98 TTFRGLGHLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDN--NLQALPDNTFRDLGN 153
Query: 397 LKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
L L L N+I ++P + F L L +L L +N
Sbjct: 154 LTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 74/154 (48%), Gaps = 27/154 (17%)
Query: 279 LKILDVSGNKLSALPDSI-SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337
+K D+S +K+ AL S+ SH L +L + N + + N L +L KL + N
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQN--- 333
Query: 338 FLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL-PETFGELTN 396
FL + +D+ E L LE+L++S N ++ L ++F L N
Sbjct: 334 FLGS----------IDSRMFE---------NLDKLEVLDLSYN--HIRALGDQSFLGLPN 372
Query: 397 LKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
LKEL L NQ+ ++P+ F RL L K+ L NP
Sbjct: 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 276 LDNLKILDVSGNKLSALPD-SISHCRSLVELD-ASFNRLAYLPTNIGHELVNLQKLLVPL 333
L L+ L + N + ++P + + SL LD RL Y+ LVNL+ L + +
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNFTDMKELPETFG 392
++ +P ++ + L L+ N L + P + LT+L L + E F
Sbjct: 166 CNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE-RNAFD 223
Query: 393 ELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
+L +L+EL+LS+N + +LP + F L +L +++L NP
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 78/158 (49%), Gaps = 6/158 (3%)
Query: 276 LDNLKILDVSGNKLSALPD-SISHCRSLVELD-ASFNRLAYLPTNIGHELVNLQKLLVPL 333
L L+ L + N + ++P + + SL LD RL Y+ LVNL+ L + +
Sbjct: 106 LSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGM 165
Query: 334 NKIRFLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNFTDMKELPETFG 392
++ +P ++ + L L+ N L + P + LT+L L + E F
Sbjct: 166 CNLKDIP-NLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIE-RNAFD 223
Query: 393 ELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENP 429
+L +L+EL+LS+N + +LP + F L +L +++L NP
Sbjct: 224 DLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 351 HLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-- 408
HLD N L LP + L LE+L S N E + L L+EL L NN++
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNAL---ENVDGVANLPRLQELLLCNNRLQQS 523
Query: 409 ALPNTFGRLDKLIKLNLEENPM 430
A +L+ LNL+ N +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 351 HLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-- 408
HLD N L LP + L LE+L S N E + L L+EL L NN++
Sbjct: 467 HLDLSHNRLRALPPALAALRCLEVLQASDNAL---ENVDGVANLPRLQELLLCNNRLQQS 523
Query: 409 ALPNTFGRLDKLIKLNLEENPM 430
A +L+ LNL+ N +
Sbjct: 524 AAIQPLVSCPRLVLLNLQGNSL 545
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 11/141 (7%)
Query: 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS--IGEMASLRHL 352
++ HC +D + L +P +I ++ +LL+ N++ + + G + L L
Sbjct: 4 AMCHCEG-TTVDCTGRGLKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKL 59
Query: 353 DAHFNELHGL-PATIGKLTNLEILNVSSNFTDMKELP-ETFGELTNLKELDLSNNQIHA- 409
+ N+L G+ P ++++ L + N +KE+ + F L LK L+L +NQI
Sbjct: 60 ELKRNQLTGIEPNAFEGASHIQELQLGEN--KIKEISNKMFLGLHQLKTLNLYDNQISCV 117
Query: 410 LPNTFGRLDKLIKLNLEENPM 430
+P +F L+ L LNL NP
Sbjct: 118 MPGSFEHLNSLTSLNLASNPF 138
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 64/226 (28%), Positives = 99/226 (43%), Gaps = 24/226 (10%)
Query: 210 LEQVDLSS--RGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
LE+ DLSS RG+ F L +S+SNN+LE I D
Sbjct: 124 LERNDLSSLPRGI------FHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177
Query: 268 XXPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQ 327
D + L+ +L +VS N LS L I+ + ELDAS N + N+ VN++
Sbjct: 178 THVD-LSLIPSLFHANVSYNLLSTLAIPIA----VEELDASHNSI-----NVVRGPVNVE 227
Query: 328 KLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMK 385
++ L T+ + L +D +NEL + K+ LE L +S+N
Sbjct: 228 LTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL 287
Query: 386 ELPETFGE-LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPM 430
L +G+ + LK LDLS+N + + + D+L L L+ N +
Sbjct: 288 NL---YGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSI 330
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 53/226 (23%)
Query: 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXXXXXX 267
SL ++L L +P AF ++ LR + L NN +E IP
Sbjct: 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSY------------------ 165
Query: 268 XXPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELD-ASFNRLAYLPTNIGHELVNL 326
+ + SL+ LD +L Y+ L NL
Sbjct: 166 ---------------------------AFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198
Query: 327 QKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384
+ L + + I+ +P T + + L HF E+ P + L++L+ L V ++ +
Sbjct: 199 KYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIR--PGSFHGLSSLKKLWVMNSQVSL 256
Query: 385 KELPETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENP 429
E F L +L EL+L++N + +LP+ F L L++L+L NP
Sbjct: 257 IE-RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 366 IGKLTNLEILNVSSNFTD-MKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIK 422
+G L LN F + + +P F L+ L+EL L NN I ++P+ F R+ L++
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMR 175
Query: 423 LNLEE 427
L+L E
Sbjct: 176 LDLGE 180
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 280 KILDVSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF 338
++L+ S N L + ++ S +L+ LD + ++ ++ + L +++ N + F
Sbjct: 35 EVLEFSFNFLPTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIF 94
Query: 339 LP-TSIGEMASLRHL---DAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGEL 394
+ TS+ L+HL + L +P + L NLE L++ SN LPE F
Sbjct: 95 MAETSLTGPKFLKHLFLTQTGISNLEFIP--VHNLENLESLHLGSNHISSINLPENFPT- 151
Query: 395 TNLKELDLSNNQIHAL 410
NLK LD NN IH +
Sbjct: 152 QNLKVLDFQNNAIHYI 167
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 48/102 (47%), Gaps = 8/102 (7%)
Query: 314 YLPTNIGHE----LVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPATIGK 368
Y P I E L NL+ L + +KI FL P + + L L +F L G
Sbjct: 59 YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118
Query: 369 LTNLEIL---NVSSNFTDMKELPETFGELTNLKELDLSNNQI 407
NL+ L ++S N L +FG+L +LK +D S+NQI
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQI 160
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 358 ELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRL 417
L +PA G T ++L++ N E P F LT L L+L+ NQ+ ALP G
Sbjct: 30 SLASVPA--GIPTTTQVLHLYINQITKLE-PGVFDSLTQLTYLNLAVNQLTALP--VGVF 84
Query: 418 DKLIKL 423
DKL KL
Sbjct: 85 DKLTKL 90
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 284 VSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-KIRFL-P 340
+ GN++S +P S CR+L L N LA + L L++L + N ++R + P
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 98
Query: 341 TSIGEMASLR--HLD-AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTN 396
+ + L HLD EL P L L+ L + N ++ LP+ TF +L N
Sbjct: 99 ATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGN 154
Query: 397 LKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
L L L N+I ++P F L L +L L +N
Sbjct: 155 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 72/153 (47%), Gaps = 12/153 (7%)
Query: 284 VSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-KIRFL-P 340
+ GN++S +P S CR+L L N LA + L L++L + N ++R + P
Sbjct: 38 LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDP 97
Query: 341 TSIGEMASLR--HLD-AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE-TFGELTN 396
+ + L HLD EL P L L+ L + N ++ LP+ TF +L N
Sbjct: 98 ATFHGLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQDN--ALQALPDDTFRDLGN 153
Query: 397 LKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428
L L L N+I ++P F L L +L L +N
Sbjct: 154 LTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 186
>pdb|4ECN|A Chain A, Crystal Structure Of A Leucine-Rich Repeat Protein
(Bt_0210) From Bacteroides Thetaiotaomicron Vpi-5482 At
2.80 A Resolution
Length = 876
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 326 LQKLLVPLNKIRFLPTS--IGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTD 383
+Q N + P S + + L LD N++ L A G TN+++ ++ ++
Sbjct: 550 IQIFYXGYNNLEEFPASASLQKXVKLGLLDCVHNKVRHLEA-FG--TNVKLTDLKLDYNQ 606
Query: 384 MKELPETFGELTNLKE-LDLSNNQIHALPNTF 414
++E+PE F T+ E L S+N++ +PN F
Sbjct: 607 IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 83/179 (46%), Gaps = 8/179 (4%)
Query: 209 SLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGXXXXXXXXXXX---X 264
SLEQ+ L L +P EA + GL ++ L + ++ I D
Sbjct: 153 SLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY 212
Query: 265 XXXXXPDSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHEL 323
P+ + L NL L ++ L+A+P ++ H L L+ S+N ++ + ++ HEL
Sbjct: 213 LDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHEL 271
Query: 324 VNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNVSSN 380
+ LQ++ + ++ + P + + LR L+ N+L L ++ + NLE L + SN
Sbjct: 272 LRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 27/160 (16%)
Query: 271 DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKL 329
D +L+ L+++ N +SA+ P + ++ +L L NRL +P + L NL KL
Sbjct: 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109
Query: 330 LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE 389
+ NKI L LD F +L+ NL+ L V N D+ +
Sbjct: 110 DISENKIVIL------------LDYMFQDLY----------NLKSLEVGDN--DLVYISH 145
Query: 390 -TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEE 427
F L +L++L L + ++P L LI L L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 388 PETFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEEN 428
P F L NL++L ++N++ A+P F +L +L +L+L +N
Sbjct: 50 PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI-GEMASLRHLDAHFNELHGLPATIGK 368
N++ L + LVNLQ+L NK+ +PT + ++ L LD + N L +P G
Sbjct: 43 NQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPR--GA 100
Query: 369 LTNLEIL 375
NL+ L
Sbjct: 101 FDNLKSL 107
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 334 NKIRFLPTSIGEMASLRHLDA-HFNELHGLPATIGKLTNLEILNVSSNFTD-MKELPE-T 390
N+I+ + + LRHL+ + H IG L LN F + + +P
Sbjct: 74 NQIQII--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGA 131
Query: 391 FGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEE 427
F L+ LKEL L NN I ++P+ F R+ L +L+L E
Sbjct: 132 FVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGE 169
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 8/108 (7%)
Query: 326 LQKLLVPLNKIRFLP-TSIGEMASLRHL---DAHFNELHGLPATIGKLTNLEILNVSSNF 381
L L++ N + F+ TS+ SL+HL + L +P + L NLE L + SN
Sbjct: 80 LSTLVLTGNPLIFMAETSLNGPKSLKHLFLIQTGISNLEFIP--VHNLENLESLYLGSNH 137
Query: 382 TDMKELPETFGELTNLKELDLSNNQIHALPNTFGR-LDKLIKLNLEEN 428
+ P+ F NLK LD NN IH + R L++ I L+L N
Sbjct: 138 ISSIKFPKDFPA-RNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFN 184
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 272 SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHE-LVNLQKLL 330
S+ ++NL+IL + N + + + + +L EL S+N++A L G E LVNL+ L
Sbjct: 65 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVLY 121
Query: 331 VPLNKIRFLPTSIGEMASLRHLD 353
+ NKI T+ GE+ L LD
Sbjct: 122 MSNNKI----TNWGEIDKLAALD 140
>pdb|3TSR|E Chain E, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|F Chain F, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|G Chain G, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
pdb|3TSR|H Chain H, X-Ray Structure Of Mouse Ribonuclease Inhibitor Complexed
With Mouse Ribonuclease 1
Length = 457
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 16/91 (17%)
Query: 333 LNKIRFLPTSIGEMASLRHLDAHFNEL----------------HGLPATIGKLTNLEILN 376
L TS +AS+ + A F EL GL + +L +L++ N
Sbjct: 145 LEYCNLTATSCEPLASVLRVKADFKELVLSNNDLHEPGVRILCQGLKDSACQLESLKLEN 204
Query: 377 VSSNFTDMKELPETFGELTNLKELDLSNNQI 407
+ K+L + +L+ELDLS+N++
Sbjct: 205 CGITAANCKDLCDVVASKASLQELDLSSNKL 235
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 8/83 (9%)
Query: 272 SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHE-LVNLQKLL 330
S+ ++NL+IL + N + + + + +L EL S+N++A L G E LVNL+ L
Sbjct: 66 SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS---GIEKLVNLRVLY 122
Query: 331 VPLNKIRFLPTSIGEMASLRHLD 353
+ NKI T+ GE+ L LD
Sbjct: 123 MSNNKI----TNWGEIDKLAALD 141
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI 250
L+ +DLSS L F+ F AG+ +SL NN L +I ++
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 348 SLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFG--ELTNLKELDLSN 404
+++ LD N L + A + T LE+LN+SSN L ET L+ L+ LDL+N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLDLESLSTLRTLDLNN 89
Query: 405 NQIHAL 410
N + L
Sbjct: 90 NYVQEL 95
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSI 250
L+ +DLSS L F+ F AG+ +SL NN L +I ++
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL 233
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 348 SLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFG--ELTNLKELDLSN 404
+++ LD N L + A + T LE+LN+SSN L ET L+ L+ LDL+N
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-----LYETLDLESLSTLRTLDLNN 89
Query: 405 NQIHAL 410
N + L
Sbjct: 90 NYVQEL 95
>pdb|3JQH|A Chain A, Structure Of The Neck Region Of The Glycan-Binding
Receptor Dc-Signr
Length = 167
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
Query: 272 SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGH--ELVNLQKL 329
++G L L +L+ L ++ +L + L L +G E LQ++
Sbjct: 22 AVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEIYQELTRLKAAVGELPEKSKLQEI 81
Query: 330 LVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE 389
L +++ ++GE+ L + EL L A +G+L E + + ++ +L
Sbjct: 82 YQELTRLK---AAVGELPEKSKLQEIYQELTELKAAVGELP--EKSKLQEIYQELTQLKA 136
Query: 390 TFGELTNLKELDLSNNQIHALPNTFGRL 417
GEL + + ++ L F RL
Sbjct: 137 AVGELPDQSKQQQIYQELTDLKTAFERL 164
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 47/117 (40%), Gaps = 13/117 (11%)
Query: 298 HCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357
HC L DA + L LP +E+V L + + + +++ SL L N
Sbjct: 7 HCEQLS--DARWTEL--LPLLQQYEVVRLDDCGLTEEHCKDIGSALRANPSLTELCLRTN 62
Query: 358 EL---------HGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN 405
EL GL + K+ L + N S LP T L L+EL LS+N
Sbjct: 63 ELGDAGVHLVLQGLQSPTCKIQKLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDN 119
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 9/90 (10%)
Query: 341 TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET--FGELTNLK 398
++I + S++ LD ++ + G L+NL++L + D+ ++ LTNL+
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTPLAG-LSNLQVL-----YLDLNQITNISPLAGLTNLQ 160
Query: 399 ELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428
L + NNQ++ L L KL L ++N
Sbjct: 161 YLSIGNNQVNDL-TPLANLSKLTTLRADDN 189
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.134 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,591,323
Number of Sequences: 62578
Number of extensions: 509826
Number of successful extensions: 2008
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1433
Number of HSP's gapped (non-prelim): 371
length of query: 516
length of database: 14,973,337
effective HSP length: 103
effective length of query: 413
effective length of database: 8,527,803
effective search space: 3521982639
effective search space used: 3521982639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)