Query 010182
Match_columns 516
No_of_seqs 588 out of 4184
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 22:00:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010182.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010182hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.9 1.2E-26 2.6E-31 267.2 16.0 228 207-435 139-373 (968)
2 KOG0444 Cytoskeletal regulator 99.9 6.9E-28 1.5E-32 244.1 3.8 274 208-502 103-408 (1255)
3 PLN00113 leucine-rich repeat r 99.9 6E-26 1.3E-30 261.4 16.7 294 208-502 164-469 (968)
4 KOG4194 Membrane glycoprotein 99.9 1.1E-26 2.5E-31 234.0 8.0 291 209-500 103-407 (873)
5 KOG4194 Membrane glycoprotein 99.9 4.9E-27 1.1E-31 236.7 2.4 295 208-503 125-434 (873)
6 KOG0444 Cytoskeletal regulator 99.9 6.1E-27 1.3E-31 237.2 -1.0 289 208-498 32-329 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 2E-27 4.3E-32 230.2 -6.8 239 208-451 91-330 (565)
8 PLN03210 Resistant to P. syrin 99.9 5.1E-23 1.1E-27 238.8 24.7 346 61-429 393-758 (1153)
9 KOG0472 Leucine-rich repeat pr 99.9 6.9E-26 1.5E-30 219.6 -6.5 267 208-500 45-312 (565)
10 PRK15387 E3 ubiquitin-protein 99.9 8E-22 1.7E-26 214.5 18.0 254 198-501 191-461 (788)
11 PRK15370 E3 ubiquitin-protein 99.9 1.2E-21 2.6E-26 214.3 17.7 262 194-498 164-428 (754)
12 KOG0618 Serine/threonine phosp 99.9 1.2E-22 2.5E-27 215.2 2.5 106 390-496 378-487 (1081)
13 PRK15370 E3 ubiquitin-protein 99.8 2.7E-20 5.8E-25 203.7 12.6 233 206-475 197-429 (754)
14 PRK15387 E3 ubiquitin-protein 99.8 3.9E-19 8.5E-24 193.6 12.8 211 207-438 221-465 (788)
15 KOG0617 Ras suppressor protein 99.8 5.3E-21 1.2E-25 166.1 -3.7 200 227-452 29-233 (264)
16 KOG0618 Serine/threonine phosp 99.8 7.8E-21 1.7E-25 201.5 -4.2 221 208-431 241-465 (1081)
17 PLN03210 Resistant to P. syrin 99.8 8.4E-18 1.8E-22 195.4 19.1 212 208-428 589-835 (1153)
18 KOG4237 Extracellular matrix p 99.7 1.7E-20 3.6E-25 182.2 -6.0 233 206-439 65-343 (498)
19 KOG0617 Ras suppressor protein 99.7 2.9E-20 6.2E-25 161.6 -4.0 160 208-368 33-194 (264)
20 cd00116 LRR_RI Leucine-rich re 99.7 8.7E-18 1.9E-22 169.0 10.1 233 208-440 23-300 (319)
21 cd00116 LRR_RI Leucine-rich re 99.7 5.5E-18 1.2E-22 170.4 5.9 270 212-496 2-318 (319)
22 KOG4237 Extracellular matrix p 99.7 1.1E-18 2.4E-23 169.7 -2.2 268 211-499 49-360 (498)
23 KOG0532 Leucine-rich repeat (L 99.5 1.2E-16 2.6E-21 162.0 -5.1 211 212-450 54-266 (722)
24 KOG1909 Ran GTPase-activating 99.5 1.5E-14 3.2E-19 139.4 5.4 226 206-431 28-311 (382)
25 COG4886 Leucine-rich repeat (L 99.5 7.3E-14 1.6E-18 145.0 8.1 201 235-439 97-298 (394)
26 KOG0532 Leucine-rich repeat (L 99.4 5E-15 1.1E-19 150.4 -3.7 193 209-406 76-271 (722)
27 COG4886 Leucine-rich repeat (L 99.4 1.2E-13 2.7E-18 143.3 6.5 197 212-412 97-294 (394)
28 KOG1909 Ran GTPase-activating 99.4 3.1E-14 6.8E-19 137.2 1.2 249 225-497 24-310 (382)
29 KOG4658 Apoptotic ATPase [Sign 99.4 7.7E-13 1.7E-17 147.6 11.6 256 69-335 368-653 (889)
30 KOG3207 Beta-tubulin folding c 99.4 6E-14 1.3E-18 138.6 1.3 201 208-431 121-339 (505)
31 KOG1259 Nischarin, modulator o 99.3 4.1E-13 8.9E-18 126.8 3.3 201 227-435 210-416 (490)
32 PF14580 LRR_9: Leucine-rich r 99.3 1.7E-12 3.8E-17 117.5 4.9 125 252-378 17-148 (175)
33 KOG1259 Nischarin, modulator o 99.3 5.2E-13 1.1E-17 126.1 0.3 200 208-411 214-415 (490)
34 PF14580 LRR_9: Leucine-rich r 99.3 3.4E-12 7.3E-17 115.6 4.7 126 299-426 18-148 (175)
35 KOG3207 Beta-tubulin folding c 99.3 9.4E-13 2E-17 130.3 1.0 177 207-383 145-339 (505)
36 KOG0531 Protein phosphatase 1, 99.1 3.7E-12 8E-17 132.9 -1.8 220 208-435 95-322 (414)
37 KOG0531 Protein phosphatase 1, 99.1 9.6E-12 2.1E-16 129.8 -2.3 217 208-431 72-290 (414)
38 KOG4658 Apoptotic ATPase [Sign 98.9 9.4E-10 2E-14 123.1 6.2 229 206-437 543-789 (889)
39 COG5238 RNA1 Ran GTPase-activa 98.9 1.4E-09 3E-14 102.0 4.3 239 195-433 16-318 (388)
40 COG5238 RNA1 Ran GTPase-activa 98.7 3.6E-09 7.7E-14 99.2 1.9 251 225-499 24-317 (388)
41 KOG1859 Leucine-rich repeat pr 98.7 4.6E-10 1E-14 117.4 -5.9 130 300-434 164-295 (1096)
42 KOG2982 Uncharacterized conser 98.6 7.6E-09 1.6E-13 98.2 1.4 220 212-433 49-292 (418)
43 KOG1859 Leucine-rich repeat pr 98.6 2.2E-09 4.8E-14 112.5 -4.8 132 323-476 163-294 (1096)
44 PLN03150 hypothetical protein; 98.5 1.6E-07 3.5E-12 102.8 8.4 103 233-335 420-526 (623)
45 PF13855 LRR_8: Leucine rich r 98.5 5.3E-08 1.1E-12 72.5 3.0 57 232-288 2-60 (61)
46 KOG2120 SCF ubiquitin ligase, 98.5 4.1E-09 8.9E-14 100.0 -4.2 80 348-428 287-373 (419)
47 PLN03150 hypothetical protein; 98.5 2.3E-07 5E-12 101.6 8.5 104 255-358 419-526 (623)
48 PF13855 LRR_8: Leucine rich r 98.5 8.4E-08 1.8E-12 71.4 3.1 35 256-290 3-38 (61)
49 KOG2982 Uncharacterized conser 98.5 6.2E-08 1.3E-12 92.2 2.5 201 206-408 69-290 (418)
50 KOG2120 SCF ubiquitin ligase, 98.5 7.3E-09 1.6E-13 98.4 -4.0 215 208-422 159-391 (419)
51 KOG4579 Leucine-rich repeat (L 98.4 2.2E-08 4.7E-13 84.8 -1.8 111 210-320 29-143 (177)
52 KOG4579 Leucine-rich repeat (L 98.4 2E-07 4.4E-12 79.0 2.9 108 206-313 51-159 (177)
53 PRK15386 type III secretion pr 98.3 1.6E-06 3.4E-11 88.2 8.7 142 193-358 39-188 (426)
54 KOG1644 U2-associated snRNP A' 98.3 7.2E-07 1.6E-11 80.6 5.6 122 257-380 22-150 (233)
55 PRK15386 type III secretion pr 98.2 8.8E-06 1.9E-10 82.8 10.2 135 227-380 48-187 (426)
56 KOG1644 U2-associated snRNP A' 98.1 2.9E-06 6.3E-11 76.8 5.2 102 211-313 22-126 (233)
57 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8E-11 57.8 3.2 39 395-433 1-39 (44)
58 PF12799 LRR_4: Leucine Rich r 98.1 5.4E-06 1.2E-10 57.0 4.0 38 232-269 2-39 (44)
59 KOG3665 ZYG-1-like serine/thre 97.8 1.3E-05 2.8E-10 88.0 4.6 148 276-424 121-281 (699)
60 KOG3665 ZYG-1-like serine/thre 97.8 1.2E-05 2.7E-10 88.2 4.4 135 202-337 116-263 (699)
61 KOG4341 F-box protein containi 97.8 8.5E-07 1.8E-11 88.2 -5.1 226 204-429 134-383 (483)
62 KOG4308 LRR-containing protein 97.6 6.2E-07 1.3E-11 94.2 -10.4 253 208-476 115-447 (478)
63 KOG4308 LRR-containing protein 97.5 1E-06 2.3E-11 92.5 -10.2 90 343-432 228-332 (478)
64 KOG2739 Leucine-rich acidic nu 97.3 8.3E-05 1.8E-09 70.2 1.2 105 228-333 40-152 (260)
65 KOG2739 Leucine-rich acidic nu 97.3 0.00015 3.3E-09 68.5 2.5 103 323-426 42-151 (260)
66 KOG2123 Uncharacterized conser 97.2 3.7E-05 8E-10 73.0 -1.9 97 208-306 19-123 (388)
67 KOG2123 Uncharacterized conser 97.1 3.1E-05 6.8E-10 73.4 -3.9 81 253-335 18-99 (388)
68 PF13306 LRR_5: Leucine rich r 97.1 0.0016 3.6E-08 55.7 6.8 102 226-332 7-111 (129)
69 PF13306 LRR_5: Leucine rich r 96.9 0.0034 7.3E-08 53.7 7.2 82 249-333 7-90 (129)
70 KOG4341 F-box protein containi 96.6 0.00017 3.6E-09 72.3 -3.1 224 206-429 162-437 (483)
71 KOG1947 Leucine rich repeat pr 96.3 0.0014 3E-08 69.5 1.3 105 207-311 187-306 (482)
72 KOG1947 Leucine rich repeat pr 95.9 0.002 4.3E-08 68.4 0.0 185 227-420 184-389 (482)
73 PF00560 LRR_1: Leucine Rich R 95.0 0.0082 1.8E-07 34.4 0.4 21 396-416 1-21 (22)
74 PF00560 LRR_1: Leucine Rich R 94.6 0.012 2.6E-07 33.7 0.4 10 258-267 4-13 (22)
75 KOG0473 Leucine-rich repeat pr 94.3 0.00092 2E-08 62.1 -7.3 86 205-290 39-124 (326)
76 PF13504 LRR_7: Leucine rich r 94.1 0.032 7E-07 29.7 1.5 16 396-411 2-17 (17)
77 KOG0473 Leucine-rich repeat pr 93.5 0.0014 3E-08 61.0 -7.7 94 220-313 30-124 (326)
78 PF13504 LRR_7: Leucine rich r 92.7 0.074 1.6E-06 28.3 1.4 11 256-266 3-13 (17)
79 KOG3864 Uncharacterized conser 91.2 0.052 1.1E-06 49.7 -0.4 81 348-428 102-186 (221)
80 smart00370 LRR Leucine-rich re 89.0 0.39 8.4E-06 28.4 2.3 21 418-438 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 89.0 0.39 8.4E-06 28.4 2.3 21 418-438 2-22 (26)
82 smart00370 LRR Leucine-rich re 88.2 0.45 9.7E-06 28.2 2.2 21 300-320 2-22 (26)
83 smart00369 LRR_TYP Leucine-ric 88.2 0.45 9.7E-06 28.2 2.2 21 300-320 2-22 (26)
84 smart00368 LRR_RI Leucine rich 87.0 0.39 8.4E-06 29.2 1.4 24 418-441 2-25 (28)
85 PF13516 LRR_6: Leucine Rich r 82.6 0.27 5.8E-06 28.5 -0.7 18 417-434 1-18 (24)
86 KOG3864 Uncharacterized conser 81.4 0.46 9.9E-06 43.7 -0.1 32 347-378 151-184 (221)
87 smart00364 LRR_BAC Leucine-ric 75.1 1.8 3.8E-05 25.9 1.2 18 395-412 2-19 (26)
88 KOG4242 Predicted myosin-I-bin 70.2 6.7 0.00014 40.8 4.7 93 348-441 355-463 (553)
89 smart00365 LRR_SD22 Leucine-ri 69.9 3.5 7.6E-05 24.6 1.6 16 395-410 2-17 (26)
90 KOG3763 mRNA export factor TAP 66.8 3.2 7E-05 43.9 1.7 60 348-408 219-283 (585)
91 PF04255 DUF433: Protein of un 64.0 4.3 9.2E-05 29.2 1.5 26 44-69 31-56 (56)
92 KOG3763 mRNA export factor TAP 51.6 6.3 0.00014 41.8 0.8 62 251-313 215-283 (585)
93 smart00367 LRR_CC Leucine-rich 48.6 10 0.00023 22.2 1.1 11 418-428 2-12 (26)
94 COG2442 Uncharacterized conser 44.3 21 0.00046 27.7 2.5 30 43-72 42-71 (79)
95 TIGR00864 PCC polycystin catio 37.7 22 0.00048 45.1 2.5 33 401-433 1-34 (2740)
96 PF00931 NB-ARC: NB-ARC domain 28.4 37 0.00081 33.0 2.1 80 48-127 186-272 (287)
97 KOG4242 Predicted myosin-I-bin 26.7 1E+02 0.0023 32.4 4.8 199 209-408 242-481 (553)
98 TIGR03504 FimV_Cterm FimV C-te 22.0 1.5E+02 0.0033 20.1 3.5 38 63-100 5-42 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.94 E-value=1.2e-26 Score=267.24 Aligned_cols=228 Identities=33% Similarity=0.446 Sum_probs=168.6
Q ss_pred CCCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ 283 (516)
.++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++.+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 356777777777776 56677777888888888888765 56777778888888888888776 5667777788888888
Q ss_pred eeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCC
Q 010182 284 VSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 284 Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
+++|.+. .+|..++.+++|++|++++|.++......+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~ 298 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence 8888776 56777777888888888888776443344456778888888888775 566677777788888888887765
Q ss_pred -cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCH
Q 010182 362 -LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 362 -l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
+|..+..+++|+.|++++|.+. ..+|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+....+
T Consensus 299 ~~p~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p 373 (968)
T PLN00113 299 EIPELVIQLQNLEILHLFSNNFT-GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIP 373 (968)
T ss_pred CCChhHcCCCCCcEEECCCCccC-CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCC
Confidence 6777777788888888877654 455667777788888888888776 466777777888888888887764433
No 2
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=6.9e-28 Score=244.06 Aligned_cols=274 Identities=29% Similarity=0.380 Sum_probs=218.1
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
..|+.|||++|+++.+|..+...+++-+|+||+|+|..||. -|.++..|-+|||++|.+..+|+-+..+.+|++|.|++
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~ 182 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN 182 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence 67899999999999999999999999999999999999986 45788889999999999999999888899999999988
Q ss_pred CCCC--------------------------CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc
Q 010182 287 NKLS--------------------------ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP 340 (516)
Q Consensus 287 n~l~--------------------------~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~ 340 (516)
|.+. .+|.++..+.+|..+|++.|.+..+|.+++. +++|+.|+|++|+|+.+.
T Consensus 183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~-l~~LrrLNLS~N~iteL~ 261 (1255)
T KOG0444|consen 183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK-LRNLRRLNLSGNKITELN 261 (1255)
T ss_pred ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh-hhhhheeccCcCceeeee
Confidence 8543 3455666677788888888888888887774 888888888888888776
Q ss_pred chhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcc
Q 010182 341 TSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL 420 (516)
Q Consensus 341 ~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 420 (516)
...+.-.+|++|++|.|+++.+|+++.++++|+.|.+.+|.+...++|..++.+..|+.+..++|.+.-+|+.+..|..|
T Consensus 262 ~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL 341 (1255)
T KOG0444|consen 262 MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKL 341 (1255)
T ss_pred ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHH
Confidence 66666777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred cEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCC-----
Q 010182 421 IKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGE----- 495 (516)
Q Consensus 421 ~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N----- 495 (516)
+.|.|+.|.+-..|..+ .-.+.++.||+..|.---.++-..-..+.+.|.++...
T Consensus 342 ~kL~L~~NrLiTLPeaI--------------------HlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNIDFSLq~Ql 401 (1255)
T KOG0444|consen 342 QKLKLDHNRLITLPEAI--------------------HLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNIDFSLQHQL 401 (1255)
T ss_pred HHhcccccceeechhhh--------------------hhcCCcceeeccCCcCccCCCCcchhhhcceeeecceehhhHH
Confidence 88888888887666543 23456788999999654444322223356777766543
Q ss_pred ccccccC
Q 010182 496 NVSGILG 502 (516)
Q Consensus 496 ~ls~~~~ 502 (516)
++.|..|
T Consensus 402 rlAG~~p 408 (1255)
T KOG0444|consen 402 RLAGQMP 408 (1255)
T ss_pred hhccCCc
Confidence 5666444
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=6e-26 Score=261.44 Aligned_cols=294 Identities=24% Similarity=0.308 Sum_probs=199.4
Q ss_pred CCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L 284 (516)
++|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.+++|++|++
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 243 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDL 243 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEEC
Confidence 67888888888876 67778888888888888888877 56788888888888888888887 67777888888888888
Q ss_pred eCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCC-
Q 010182 285 SGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG- 361 (516)
Q Consensus 285 s~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~- 361 (516)
++|.+. .+|..+..+++|+.|++++|.+.......+..+.+|+.|++++|.+. .+|..+..+++|++|++++|.+++
T Consensus 244 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~ 323 (968)
T PLN00113 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323 (968)
T ss_pred cCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc
Confidence 888876 56777888888888888888876433333345788888888888776 556677777888888888887765
Q ss_pred cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182 362 LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE 440 (516)
Q Consensus 362 l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 440 (516)
+|..+..+++|+.|++++|.+. ..+|..++.+++|+.|++++|+++ .+|..+..+++|+.|++++|.+....+..+..
T Consensus 324 ~~~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~ 402 (968)
T PLN00113 324 IPVALTSLPRLQVLQLWSNKFS-GEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGA 402 (968)
T ss_pred CChhHhcCCCCCEEECcCCCCc-CcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhC
Confidence 5667777788888888877654 456677777777777777777776 34566666666666666666665443333221
Q ss_pred hhHHHHHHHhhh-----hhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 441 GVGAVKTFMAKR-----WLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 441 ~~~~~~~~~~~~-----~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
........+..+ ....+...+.++.+++++|++++..+...+..++++.|++++|+++|..+
T Consensus 403 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p 469 (968)
T PLN00113 403 CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP 469 (968)
T ss_pred CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecC
Confidence 110000001111 11122334455566666666666555555555555555555555555443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-26 Score=234.03 Aligned_cols=291 Identities=23% Similarity=0.273 Sum_probs=141.1
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~ 286 (516)
+|+.+.+..|.++.+|.......+|+.|+|.+|.|.++ ...++.++.|+.|||+.|.|+.++. .|..-.++++|+|++
T Consensus 103 nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~ 182 (873)
T KOG4194|consen 103 NLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLAS 182 (873)
T ss_pred cceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecc
Confidence 34444444444444443222233344444444444433 2234444444444444444444432 333334455555555
Q ss_pred CCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCcch
Q 010182 287 NKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 287 n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~ 364 (516)
|+|+.+ ...|.++.+|..|.|+.|.++.+|...|+.+++|+.|+|..|.|+.+ -..|..+.+|+.|.|..|.+..+.+
T Consensus 183 N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~D 262 (873)
T KOG4194|consen 183 NRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDD 262 (873)
T ss_pred ccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccC
Confidence 555444 22344444555555555555555555554455555555555554433 1233444444444444444444322
Q ss_pred -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182 365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV 442 (516)
Q Consensus 365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 442 (516)
.|..+.++++|+|..|.+... -..++-+++.|+.|+|+.|.|..+. +....+++|+.|+|++|.|+..+...+..--
T Consensus 263 G~Fy~l~kme~l~L~~N~l~~v-n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~ 341 (873)
T KOG4194|consen 263 GAFYGLEKMEHLNLETNRLQAV-NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS 341 (873)
T ss_pred cceeeecccceeecccchhhhh-hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH
Confidence 344555566666666643311 1235556666666666666666663 5666666667777777666666665554333
Q ss_pred HHHHHHHhhhhhhHh-----HHHhhhcccccccccCCCCCC---CCccccccccEEEccCCccccc
Q 010182 443 GAVKTFMAKRWLDIL-----LEEERRSMLKLEGNNNEGEQM---PTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 443 ~~~~~~~~~~~l~~~-----~~~~~l~~l~L~~N~i~~~~~---~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
+.-...+..+-++.+ ....++..|||++|.+..+.- .++..+++|+.|.+.||++..+
T Consensus 342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeec
Confidence 333333444444443 233555566666666555422 1222344555666666655544
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.93 E-value=4.9e-27 Score=236.67 Aligned_cols=295 Identities=26% Similarity=0.277 Sum_probs=192.7
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L 284 (516)
.+++.|+|.+|.|+.+.. .++.++.|+.||||.|.|+.++. .|..-.++++|+|++|.|+.+.. .|..+.+|.+|.|
T Consensus 125 ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkL 204 (873)
T KOG4194|consen 125 GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKL 204 (873)
T ss_pred cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeec
Confidence 456777777777765533 46666677777777777776643 55555667777777777776543 5666667777777
Q ss_pred eCCCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCc
Q 010182 285 SGNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL 362 (516)
Q Consensus 285 s~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l 362 (516)
+.|+|+.+|. .|.++++|+.|+|..|.|..+....|.++++|+.|.+..|+|..+.. .|..+.++++|+|..|+++.+
T Consensus 205 srNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 205 SRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred ccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 7777776654 34447777777777777666655566667777777777776665543 345566667777777766664
Q ss_pred c-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182 363 P-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKE 440 (516)
Q Consensus 363 ~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 440 (516)
. .++.+++.|+.|+|+.|.|.-. -+..++..++|++|+|++|+|+.++ ..|..+..|++|+|++|.+..+....|..
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~ri-h~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hcccccccchhhhhccchhhhhee-ecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 3 2556666677777777655422 2345566666777777777777665 56666666777777777666555544442
Q ss_pred hhHHHHHHHhhhhhhHh--------HHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182 441 GVGAVKTFMAKRWLDIL--------LEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG 503 (516)
Q Consensus 441 ~~~~~~~~~~~~~l~~~--------~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~ 503 (516)
.-..-+.-+..+-+.|. ...+.++.|+|.+|++....--++.....|+.||+.+|.|..+-+.
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 22222222333333322 3457788999999999998888888899999999999999887654
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.92 E-value=6.1e-27 Score=237.24 Aligned_cols=289 Identities=22% Similarity=0.373 Sum_probs=237.5
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCC--CcchhhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE--TLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls 285 (516)
+.++.|.|...++..+|+.++.+.+|+.|.+++|++.++...++.++.|+.++++.|++. .+|..+..+..|++||||
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 678999999999999999999999999999999999999889999999999999999888 789988899999999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc-ch
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PA 364 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~ 364 (516)
+|+++.+|..+..-+++..|+|++|+|..+|...+.++..|-.|+|++|++..+|+-+..+..|++|+|++|.+..+ -.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987663 13
Q ss_pred hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHH
Q 010182 365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGA 444 (516)
Q Consensus 365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~ 444 (516)
.+..+++|++|.+++..-+...+|.++..+.+|..+|++.|.+..+|+.+-.+++|+.|+|++|.|+.....+-. ...
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~--W~~ 269 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGE--WEN 269 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHH--Hhh
Confidence 455677889999999877778899999999999999999999999999999999999999999999876543311 011
Q ss_pred H-HHHHhhhhhhHh----HHHhhhcccccccccCCCCCCCCcc-ccccccEEEccCCccc
Q 010182 445 V-KTFMAKRWLDIL----LEEERRSMLKLEGNNNEGEQMPTGW-LTRSTSWLKTVGENVS 498 (516)
Q Consensus 445 ~-~~~~~~~~l~~~----~~~~~l~~l~L~~N~i~~~~~~~~~-~~~~l~~l~l~~N~ls 498 (516)
+ ...++.+.+..+ ....+++.|.+.+|+++...+|+.. ....+..+..++|++-
T Consensus 270 lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE 329 (1255)
T KOG0444|consen 270 LETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE 329 (1255)
T ss_pred hhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc
Confidence 1 111222322222 3345556666666666666555443 2344555555555543
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.92 E-value=2e-27 Score=230.23 Aligned_cols=239 Identities=36% Similarity=0.564 Sum_probs=202.8
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
..++.++.++|+++.+|+.+..+..|+.|++++|.+..++++++.+..|..|+..+|++..+|+++..+.+|..|++.+|
T Consensus 91 ~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n 170 (565)
T KOG0472|consen 91 EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGN 170 (565)
T ss_pred HHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhcccc
Confidence 34667788888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
++..+|+..-.++.|++||...|-++.+|..++. +.+|..|++..|+|..+| .|..|..|++|.++.|++..+|....
T Consensus 171 ~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~-l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~ 248 (565)
T KOG0472|consen 171 KLKALPENHIAMKRLKHLDCNSNLLETLPPELGG-LESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHL 248 (565)
T ss_pred chhhCCHHHHHHHHHHhcccchhhhhcCChhhcc-hhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHh
Confidence 8888877766688888888888888888888774 888888899999998887 78888888999999998888877554
Q ss_pred -CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182 368 -KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK 446 (516)
Q Consensus 368 -~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 446 (516)
+++++.+|||.+| .+..+|..+.-+.+|++||+++|.|+.+|..++++ +|+.|-+.||++..+...++..|.+.+-
T Consensus 249 ~~L~~l~vLDLRdN--klke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vL 325 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDN--KLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVL 325 (565)
T ss_pred cccccceeeecccc--ccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHH
Confidence 8899999999999 56788999999999999999999999999999999 9999999999999888888888877766
Q ss_pred HHHhh
Q 010182 447 TFMAK 451 (516)
Q Consensus 447 ~~~~~ 451 (516)
.|+..
T Consensus 326 KyLrs 330 (565)
T KOG0472|consen 326 KYLRS 330 (565)
T ss_pred HHHHH
Confidence 66554
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5.1e-23 Score=238.78 Aligned_cols=346 Identities=21% Similarity=0.257 Sum_probs=258.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHhhH-HHHhhhhhhhhcccCccchhHHHHHHHHhHHHHHH
Q 010182 61 KLVSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIVEIDS-ELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALR 139 (516)
Q Consensus 61 e~~aam~~~~~~v~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~el~~~l~~~~~~~~~ 139 (516)
+++|+.++.. +..+|+.+++++...++..+..+.+.+|+.+.. +++..|.++|++....++.. ...++..... ..
T Consensus 393 ~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~-v~~~l~~~~~-~~- 468 (1153)
T PLN03210 393 NVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVND-IKLLLANSDL-DV- 468 (1153)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHH-HHHHHHhcCC-Cc-
Confidence 4455555543 578999999999999999999999999999975 58899999999877665532 2222221110 00
Q ss_pred HHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHhHHhhC-CCccEEE
Q 010182 140 EDSAKEKNACKKILEL----DDMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLLQEAAG-KSLEQVD 214 (516)
Q Consensus 140 ~~~~~~~~~~~~l~~~----~~~h~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~L~~L~ 214 (516)
...-..-.-+++++. -+||+++++|+++++. ..+ .+++++.+.|..+++..++....+ ..++.+.
T Consensus 469 -~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~--------~~~-~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~ 538 (1153)
T PLN03210 469 -NIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVR--------AQS-NEPGEREFLVDAKDICDVLEDNTGTKKVLGIT 538 (1153)
T ss_pred -hhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHH--------hhc-CCCCcceeEeCHHHHHHHHHhCcccceeeEEE
Confidence 000111122233322 3599999999999972 222 456678889999999988876654 3455555
Q ss_pred eecCCCCc--c-hHhhcCCCCCcEEEeecCCCC-------CcchhhcCCC-CccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182 215 LSSRGLRF--L-PEAFGRIAGLRLMSLSNNHLE-------VIPDSIAGLV-NLEELNLASNLLETLPDSIGLLDNLKILD 283 (516)
Q Consensus 215 L~~~~l~~--l-~~~~~~l~~L~~L~Ls~n~l~-------~l~~~l~~l~-~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ 283 (516)
+.-..+.. + +.+|..|++|+.|.+..+... .+|..+..++ +|+.|.+.++.++.+|..+ ...+|+.|+
T Consensus 539 l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~ 617 (1153)
T PLN03210 539 LDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQ 617 (1153)
T ss_pred eccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEE
Confidence 54444442 2 457999999999999776432 4677777765 6999999999999999877 578999999
Q ss_pred eeCCCCCCCCcccccCCCCcEEeCCCCC-CCcCChhhhhcCCCCcEEecCCC-CCccccchhcCCCCCcEEEccCC-CCC
Q 010182 284 VSGNKLSALPDSISHCRSLVELDASFNR-LAYLPTNIGHELVNLQKLLVPLN-KIRFLPTSIGEMASLRHLDAHFN-ELH 360 (516)
Q Consensus 284 Ls~n~l~~l~~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~n-~l~ 360 (516)
+++|.+..++.++..+++|+.|++++|. +..+|. +..+++|+.|++++| .+..+|..+.++++|+.|++++| .++
T Consensus 618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~ 695 (1153)
T PLN03210 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLE 695 (1153)
T ss_pred CcCccccccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcC
Confidence 9999999999999999999999999875 677775 345899999999987 57789999999999999999986 577
Q ss_pred CcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCC
Q 010182 361 GLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENP 429 (516)
Q Consensus 361 ~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~ 429 (516)
.+|..+ ++++|+.|++++|. ....+|. ...+|+.|++++|.|+.+|..+ .+++|+.|++.++.
T Consensus 696 ~Lp~~i-~l~sL~~L~Lsgc~-~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~ 758 (1153)
T PLN03210 696 ILPTGI-NLKSLYRLNLSGCS-RLKSFPD---ISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMK 758 (1153)
T ss_pred ccCCcC-CCCCCCEEeCCCCC-Ccccccc---ccCCcCeeecCCCccccccccc-cccccccccccccc
Confidence 788765 78999999999984 2344443 2468999999999999998654 56777777777643
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=6.9e-26 Score=219.59 Aligned_cols=267 Identities=34% Similarity=0.493 Sum_probs=231.2
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
..+..+++++|.+..+...+.++..|++|++++|++..+|.+++.+..++.|+.++|++..+|..++.+.+|..|+.+.|
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n 124 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN 124 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc
Confidence 34677889999998888888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
.+..++++++.+-.|..++..+|+++.+|..++. +.+|..+++.+|++..+|+..-.++.|++||...|-++.+|..++
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~-~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg 203 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVN-LSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELG 203 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHH-HHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhc
Confidence 9999999999999999999999999999988874 888999999999999998887779999999999999999999999
Q ss_pred CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK 446 (516)
Q Consensus 368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 446 (516)
.+.+|..|+|..| .+..+| .|.++..|.+|+++.|+|..+| +..+++++|.+|||..|+++..|.+++.
T Consensus 204 ~l~~L~~LyL~~N--ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl------- 273 (565)
T KOG0472|consen 204 GLESLELLYLRRN--KIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL------- 273 (565)
T ss_pred chhhhHHHHhhhc--ccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHH-------
Confidence 9999999999999 456777 7889999999999999999998 5556899999999999999988877643
Q ss_pred HHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 447 TFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 447 ~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
...+..+|+++|.|++.+..-... .+.+|-+.||.+..+
T Consensus 274 -------------LrsL~rLDlSNN~is~Lp~sLgnl--hL~~L~leGNPlrTi 312 (565)
T KOG0472|consen 274 -------------LRSLERLDLSNNDISSLPYSLGNL--HLKFLALEGNPLRTI 312 (565)
T ss_pred -------------hhhhhhhcccCCccccCCcccccc--eeeehhhcCCchHHH
Confidence 345677999999999875544433 688899999977654
No 10
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=8e-22 Score=214.47 Aligned_cols=254 Identities=24% Similarity=0.255 Sum_probs=149.9
Q ss_pred HHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCC
Q 010182 198 VMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLD 277 (516)
Q Consensus 198 ~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~ 277 (516)
+...+..+....-..|+|+++.++.+|..+. ++|+.|++++|+++.+|.. +++|++|++++|+|+.+|.. .+
T Consensus 191 a~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~ 262 (788)
T PRK15387 191 VVQKMRACLNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PP 262 (788)
T ss_pred HHHHHHHHhcCCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---cc
Confidence 4444445544555667777777777766554 3677777777777766542 45677777777777766542 24
Q ss_pred CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhc-------------
Q 010182 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG------------- 344 (516)
Q Consensus 278 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~------------- 344 (516)
+|+.|++++|.++.+|... .+|+.|++++|+++.+|.. .++|+.|++++|.+..+|....
T Consensus 263 sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~----p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~ 335 (788)
T PRK15387 263 GLLELSIFSNPLTHLPALP---SGLCKLWIFGNQLTSLPVL----PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLT 335 (788)
T ss_pred ccceeeccCCchhhhhhch---hhcCEEECcCCcccccccc----ccccceeECCCCccccCCCCcccccccccccCccc
Confidence 5555555555555544321 3344445555554444431 2344455555444444332110
Q ss_pred ----CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcc
Q 010182 345 ----EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKL 420 (516)
Q Consensus 345 ----~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L 420 (516)
...+|++|++++|+++.+|.. ..+|+.|++++|.+ ..+|.. ..+|+.|++++|+|+.+|.. .++|
T Consensus 336 ~LP~lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L--~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L 404 (788)
T PRK15387 336 SLPTLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRL--TSLPAL---PSGLKELIVSGNRLTSLPVL---PSEL 404 (788)
T ss_pred cccccccccceEecCCCccCCCCCC---Ccccceehhhcccc--ccCccc---ccccceEEecCCcccCCCCc---ccCC
Confidence 113566666666666665542 23556666666643 344432 24577777777777777643 2567
Q ss_pred cEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 421 IKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 421 ~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
+.|++++|.|+.+|.. ...+..+++++|+|+. .+..+.....+..+++++|.|+|.
T Consensus 405 ~~LdLS~N~LssIP~l-----------------------~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~ 460 (788)
T PRK15387 405 KELMVSGNRLTSLPML-----------------------PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSER 460 (788)
T ss_pred CEEEccCCcCCCCCcc-----------------------hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCch
Confidence 7777777777765531 1235668999999984 344566778899999999999987
Q ss_pred c
Q 010182 501 L 501 (516)
Q Consensus 501 ~ 501 (516)
.
T Consensus 461 ~ 461 (788)
T PRK15387 461 T 461 (788)
T ss_pred H
Confidence 4
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.87 E-value=1.2e-21 Score=214.25 Aligned_cols=262 Identities=25% Similarity=0.397 Sum_probs=205.6
Q ss_pred ccHHHHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhh
Q 010182 194 VNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSI 273 (516)
Q Consensus 194 ~~~~~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l 273 (516)
..+++...+..+...+...|++++++++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+
T Consensus 164 ~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l 239 (754)
T PRK15370 164 NREEAVQRMRDCLKNNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATL 239 (754)
T ss_pred cHHHHHHHHHhhcccCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhh
Confidence 34455556667766788899999999999987654 689999999999999987664 58999999999999998765
Q ss_pred cCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEE
Q 010182 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLD 353 (516)
Q Consensus 274 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~ 353 (516)
. .+|+.|+|++|.+..+|..+. .+|+.|++++|+++.+|..+. .+|+.|++++|+++.+|..+. .+|+.|+
T Consensus 240 ~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~---~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~ 310 (754)
T PRK15370 240 P--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP---EELRYLSVYDNSIRTLPAHLP--SGITHLN 310 (754)
T ss_pred h--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC---CCCcEEECCCCccccCcccch--hhHHHHH
Confidence 3 479999999999999987764 589999999999998887543 589999999999998876553 4789999
Q ss_pred ccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182 354 AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 354 Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
+++|.++.+|..+. ++|+.|++++|. +..+|..+. ++|+.|++++|+|+.+|..+. ++|+.|+|++|.|+.+
T Consensus 311 Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~--Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt~L 382 (754)
T PRK15370 311 VQSNSLTALPETLP--PGLKTLEAGENA--LTSLPASLP--PELQVLDVSKNQITVLPETLP--PTITTLDVSRNALTNL 382 (754)
T ss_pred hcCCccccCCcccc--ccceeccccCCc--cccCChhhc--CcccEEECCCCCCCcCChhhc--CCcCEEECCCCcCCCC
Confidence 99999999876553 689999999995 456776553 689999999999999987663 6899999999999987
Q ss_pred CHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCC--CCc-cccccccEEEccCCccc
Q 010182 434 PVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQM--PTG-WLTRSTSWLKTVGENVS 498 (516)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~--~~~-~~~~~l~~l~l~~N~ls 498 (516)
|..+. ..++.+++++|+++..+. +.+ ...+.+..+++.+|.++
T Consensus 383 P~~l~----------------------~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 383 PENLP----------------------AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CHhHH----------------------HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 76432 135567777777774321 111 12245667777777764
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=1.2e-22 Score=215.16 Aligned_cols=106 Identities=23% Similarity=0.302 Sum_probs=74.7
Q ss_pred hhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhH---HHhhhcc
Q 010182 390 TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILL---EEERRSM 465 (516)
Q Consensus 390 ~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~ 465 (516)
.+.+..+|+.|+|++|++..+| ..+.+++.|+.|+|+||+++.++..+...+ ..-......|.+..++ ..+.++.
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~-~L~tL~ahsN~l~~fPe~~~l~qL~~ 456 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLG-RLHTLRAHSNQLLSFPELAQLPQLKV 456 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhh-hhHHHhhcCCceeechhhhhcCcceE
Confidence 3455678888888888888888 677888888888888888888885554322 2222233344444443 3456777
Q ss_pred cccccccCCCCCCCCccccccccEEEccCCc
Q 010182 466 LKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN 496 (516)
Q Consensus 466 l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ 496 (516)
+|++.|+++....+.....+.|.+||++||.
T Consensus 457 lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 457 LDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred EecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 8888888888877776666788889888885
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=2.7e-20 Score=203.68 Aligned_cols=233 Identities=27% Similarity=0.407 Sum_probs=188.7
Q ss_pred hCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 206 AGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
..+.++.|++++|.++.+|..+. .+|+.|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|+++
T Consensus 197 Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 197 IPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 34679999999999999998664 689999999999999987664 489999999999999988664 589999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 365 (516)
+|+++.+|..+. .+|+.|++++|+++.+|..+. .+|+.|++++|.+..+|..+. ++|+.|++++|.++.+|..
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp---~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~ 343 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLPAHLP---SGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPAS 343 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCcccch---hhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChh
Confidence 999999987664 589999999999998886543 478999999999998876553 6899999999999999876
Q ss_pred hCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV 445 (516)
Q Consensus 366 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 445 (516)
+. ++|+.|++++|.+ ..+|..+ .++|+.|+|++|+++.+|..+. ..|+.|++++|.|..+|..+...
T Consensus 344 l~--~sL~~L~Ls~N~L--~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~----- 410 (754)
T PRK15370 344 LP--PELQVLDVSKNQI--TVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHF----- 410 (754)
T ss_pred hc--CcccEEECCCCCC--CcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHH-----
Confidence 64 7899999999954 4577655 3689999999999999987664 37999999999998776532110
Q ss_pred HHHHhhhhhhHhHHHhhhcccccccccCCC
Q 010182 446 KTFMAKRWLDILLEEERRSMLKLEGNNNEG 475 (516)
Q Consensus 446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~ 475 (516)
....+.+..+++.+|.++.
T Consensus 411 -----------~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 411 -----------RGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred -----------hhcCCCccEEEeeCCCccH
Confidence 0122445667777777664
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=3.9e-19 Score=193.56 Aligned_cols=211 Identities=32% Similarity=0.368 Sum_probs=127.0
Q ss_pred CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhc------------
Q 010182 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIG------------ 274 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~------------ 274 (516)
..+++.|++.+|+++.+|. ..++|++|++++|+++.+|.. .++|+.|++++|.++.+|..+.
T Consensus 221 ~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 221 PAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQL 294 (788)
T ss_pred hcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhchhhcCEEECcCCcc
Confidence 3567778888887777764 246777777777777766532 2344444444444443332110
Q ss_pred -----CCCCCcEEEeeCCCCCCCCccccc-----------------CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecC
Q 010182 275 -----LLDNLKILDVSGNKLSALPDSISH-----------------CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332 (516)
Q Consensus 275 -----~l~~L~~L~Ls~n~l~~l~~~l~~-----------------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 332 (516)
..++|+.|++++|+++.+|..... ..+|+.|++++|+|+.+|.. ..+|+.|+++
T Consensus 295 t~LP~~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls 370 (788)
T PRK15387 295 TSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTL----PSELYKLWAY 370 (788)
T ss_pred ccccccccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecCCCccCCCCCC----Ccccceehhh
Confidence 124566666666666555431110 01334444444444433321 2234444444
Q ss_pred CCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchh
Q 010182 333 LNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN 412 (516)
Q Consensus 333 ~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~ 412 (516)
+|.+..+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+ ..+|.. +.+|+.|++++|+|+.+|.
T Consensus 371 ~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~L--ssIP~l---~~~L~~L~Ls~NqLt~LP~ 439 (788)
T PRK15387 371 NNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRL--TSLPML---PSGLLSLSVYRNQLTRLPE 439 (788)
T ss_pred ccccccCccc---ccccceEEecCCcccCCCCc---ccCCCEEEccCCcC--CCCCcc---hhhhhhhhhccCcccccCh
Confidence 4444444322 23577777777777776653 35688888888844 456643 3467889999999999998
Q ss_pred hhcCCCcccEEecccCCCCCCCHHHH
Q 010182 413 TFGRLDKLIKLNLEENPMVIPPVEVV 438 (516)
Q Consensus 413 ~l~~l~~L~~L~L~~N~l~~~~~~~~ 438 (516)
.+..+++|+.|+|++|+|++..+..+
T Consensus 440 sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 440 SLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred HHhhccCCCeEECCCCCCCchHHHHH
Confidence 89999999999999999987655544
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.78 E-value=5.3e-21 Score=166.10 Aligned_cols=200 Identities=39% Similarity=0.592 Sum_probs=153.1
Q ss_pred hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEe
Q 010182 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELD 306 (516)
Q Consensus 227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ 306 (516)
+..+.+++.|.+++|+++.+|+.+..+.+|+.|++++|+|+.+|..++.+++|+.|+++-|++..+|.+|+.++.|+.||
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levld 108 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLD 108 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhh
Confidence 45678888899999999999999999999999999999999999999999999999999999988899999888888888
Q ss_pred CCCCCCC--cCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCC
Q 010182 307 ASFNRLA--YLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDM 384 (516)
Q Consensus 307 L~~n~l~--~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~ 384 (516)
+++|++. .+|.++| .++.|+.|.+++|.+.-+|..++++++|+.|.+..| .+
T Consensus 109 ltynnl~e~~lpgnff------------------------~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn--dl 162 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF------------------------YMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN--DL 162 (264)
T ss_pred ccccccccccCCcchh------------------------HHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC--ch
Confidence 8888775 3444444 445555555666666666666666777777777777 55
Q ss_pred CCcchhhcCCCCccEEeccCCCCCCchhhhcCCC---cccEEecccCCCCCCCHHHHhchhHHHHHHHhhh
Q 010182 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLD---KLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKR 452 (516)
Q Consensus 385 ~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~---~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~ 452 (516)
..+|..++.++.|++|++.+|+++.+|..++.+. +=+...+.+|++.....+-+.-|...+..++...
T Consensus 163 l~lpkeig~lt~lrelhiqgnrl~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirte 233 (264)
T KOG0617|consen 163 LSLPKEIGDLTRLRELHIQGNRLTVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRTE 233 (264)
T ss_pred hhCcHHHHHHHHHHHHhcccceeeecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhhh
Confidence 6777777788888888888888888876665543 3356777888887776666666777766665543
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.77 E-value=7.8e-21 Score=201.46 Aligned_cols=221 Identities=32% Similarity=0.457 Sum_probs=114.3
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
.++++++++++.++.+|++++.+.+|+.++..+|.+..+|..+....+|+.|.+.+|.+..+|.....++.|++|+|..|
T Consensus 241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N 320 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSN 320 (1081)
T ss_pred ccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhc
Confidence 45666666666666666666666777777777776666666666666666666666666666666666666666666666
Q ss_pred CCCCCCccccc--CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCCcch
Q 010182 288 KLSALPDSISH--CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 288 ~l~~l~~~l~~--l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~l~~ 364 (516)
.|..+|+.+.. ..+|..|+.+.|.+..++..-......|+.|++.+|.++ ..-+.+.+..+|+.|+|++|++..+|.
T Consensus 321 ~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpa 400 (1081)
T KOG0618|consen 321 NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPA 400 (1081)
T ss_pred cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCH
Confidence 66655543221 111333333333333333222222333444444444444 111233444445555555555444443
Q ss_pred -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182 365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~ 431 (516)
.+.++..|+.|+|+|| .+..+|..+..+..|++|...+|+|..+| .+..++.|+.+|++.|.|+
T Consensus 401 s~~~kle~LeeL~LSGN--kL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~ 465 (1081)
T KOG0618|consen 401 SKLRKLEELEELNLSGN--KLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLS 465 (1081)
T ss_pred HHHhchHHhHHHhcccc--hhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhh
Confidence 3344444455555555 23344444444444444444444444444 3444444445555444443
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.77 E-value=8.4e-18 Score=195.41 Aligned_cols=212 Identities=27% Similarity=0.418 Sum_probs=147.8
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCC-CCCCcchhhcCCCCCcEEEeeC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN-LLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
..|+.|++.++.++.+|..| ...+|+.|++++|.+..++.++..+++|++|+|++| .++.+|. ++.+++|++|++++
T Consensus 589 ~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 589 PKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSD 666 (1153)
T ss_pred cccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecC
Confidence 46888888888888888776 468888899998888888888888888999999876 4667764 67788889999888
Q ss_pred C-CCCCCCcccccCCCCcEEeCCCC-CCCcCChhhhhcCCCCcEEecCCCC-CccccchhcCCCCCcEEEccCCCCCCcc
Q 010182 287 N-KLSALPDSISHCRSLVELDASFN-RLAYLPTNIGHELVNLQKLLVPLNK-IRFLPTSIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 287 n-~l~~l~~~l~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
| .+..+|..+..+++|+.|++++| .++.+|..+ ++.+|+.|++++|. +..+|.. ..+|++|++++|.++.+|
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFP 741 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccccc
Confidence 7 56678888888888888888886 467777654 47778888887774 3344432 346677777777766665
Q ss_pred hhhC------------------------------CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC-CCCCchh
Q 010182 364 ATIG------------------------------KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN-QIHALPN 412 (516)
Q Consensus 364 ~~l~------------------------------~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n-~i~~lp~ 412 (516)
..+. .+++|+.|++++|.. ...+|..++++++|+.|+|++| .++.+|.
T Consensus 742 ~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~-l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS-LVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCC-ccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 4321 123455555655532 2445666666666777776665 4555654
Q ss_pred hhcCCCcccEEecccC
Q 010182 413 TFGRLDKLIKLNLEEN 428 (516)
Q Consensus 413 ~l~~l~~L~~L~L~~N 428 (516)
.+ .+++|+.|++++|
T Consensus 821 ~~-~L~sL~~L~Ls~c 835 (1153)
T PLN03210 821 GI-NLESLESLDLSGC 835 (1153)
T ss_pred CC-CccccCEEECCCC
Confidence 43 4566666666665
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=1.7e-20 Score=182.20 Aligned_cols=233 Identities=24% Similarity=0.331 Sum_probs=139.5
Q ss_pred hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeC-CCCCCcch-hhcCCCCCcE
Q 010182 206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLAS-NLLETLPD-SIGLLDNLKI 281 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~-n~l~~l~~-~l~~l~~L~~ 281 (516)
.....+.++|..|+|+.+|+ +|+.+++|+.|+|++|+|+.| |++|.+++.|..|-+.+ |+|+.+|. .|+++..|+.
T Consensus 65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 34556677777777777765 577777777888888777776 67777777777665555 77777775 6677777777
Q ss_pred EEeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-------------cccchhcCCC
Q 010182 282 LDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-------------FLPTSIGEMA 347 (516)
Q Consensus 282 L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------~l~~~l~~l~ 347 (516)
|.+.-|++.-+ .+.+..+++|..|.+..|.+..++...+..+.+++.+.+..|.+- ..+..++...
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar 224 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR 224 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence 77777777755 345667777777777777777777766666777777776666521 0111111111
Q ss_pred CCcEEEccCCCCCC--------------------------cc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEE
Q 010182 348 SLRHLDAHFNELHG--------------------------LP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKEL 400 (516)
Q Consensus 348 ~L~~L~Ls~n~l~~--------------------------l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L 400 (516)
...-..+.+.++.. .| ..+..+++|++|+|++|.++.. -+.+|.+...+++|
T Consensus 225 c~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i-~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 225 CVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI-EDGAFEGAAELQEL 303 (498)
T ss_pred ecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh-hhhhhcchhhhhhh
Confidence 11111111111111 11 1455556666666666654422 24455566666666
Q ss_pred eccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 401 DLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 401 ~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
.|..|+|..+. ..|.++..|+.|+|.+|+|+...+..|.
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~ 343 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQ 343 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccc
Confidence 66666665554 4555566666666666666555444433
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.75 E-value=2.9e-20 Score=161.58 Aligned_cols=160 Identities=33% Similarity=0.518 Sum_probs=150.7
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
.+++.|.|++|.++.+|..+..+.+|++|++++|+|+.+|..++.+++|+.|++.-|.+..+|..|+.++.|+.|||.+|
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182 288 KLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365 (516)
Q Consensus 288 ~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 365 (516)
.+. .+|..|..++.|+.|+++.|.+..+|..++. +++|+.|.+..|.+-++|..++.++.|++|.+.+|+++-+|..
T Consensus 113 nl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~-lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGK-LTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcCCCcccCChhhhh-hcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 988 6899999999999999999999999999885 9999999999999999999999999999999999999988776
Q ss_pred hCC
Q 010182 366 IGK 368 (516)
Q Consensus 366 l~~ 368 (516)
+++
T Consensus 192 l~~ 194 (264)
T KOG0617|consen 192 LAN 194 (264)
T ss_pred hhh
Confidence 554
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.73 E-value=8.7e-18 Score=168.95 Aligned_cols=233 Identities=24% Similarity=0.253 Sum_probs=178.4
Q ss_pred CCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCCC-------cchhhcCCCCccEEEeeCCCCC-Ccchhhc
Q 010182 208 KSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLEV-------IPDSIAGLVNLEELNLASNLLE-TLPDSIG 274 (516)
Q Consensus 208 ~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~~-------l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~ 274 (516)
..++.|+++++.++ .++..+...++|+.|+++++.+.. ++..+..+++|++|++++|.+. ..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 44999999999985 456677788889999999987763 3456778899999999999987 3444444
Q ss_pred CCC---CCcEEEeeCCCCCC-----CCcccccC-CCCcEEeCCCCCCCcCC----hhhhhcCCCCcEEecCCCCCc----
Q 010182 275 LLD---NLKILDVSGNKLSA-----LPDSISHC-RSLVELDASFNRLAYLP----TNIGHELVNLQKLLVPLNKIR---- 337 (516)
Q Consensus 275 ~l~---~L~~L~Ls~n~l~~-----l~~~l~~l-~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~---- 337 (516)
.+. +|++|++++|.++. +...+..+ ++|+.|++++|.++... ...+..+.+|++|++++|.++
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 444 49999999998872 33455666 89999999999987311 122345778999999999987
Q ss_pred -cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCcchhhcC----CCCccEEeccCCCC
Q 010182 338 -FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKELPETFGE----LTNLKELDLSNNQI 407 (516)
Q Consensus 338 -~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~----l~~L~~L~L~~n~i 407 (516)
.++..+..+++|++|++++|.+++ +...+..+++|++|++++|.+....+...... .+.|++|++++|.+
T Consensus 183 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i 262 (319)
T cd00116 183 RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI 262 (319)
T ss_pred HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC
Confidence 344556677899999999999875 45567788999999999997654333222222 47999999999999
Q ss_pred C-----CchhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182 408 H-----ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKE 440 (516)
Q Consensus 408 ~-----~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 440 (516)
+ .+...+..+++|+.+++++|.++..+...+.+
T Consensus 263 ~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 263 TDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence 7 34567778899999999999999776655543
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=5.5e-18 Score=170.43 Aligned_cols=270 Identities=23% Similarity=0.224 Sum_probs=181.3
Q ss_pred EEEeecCCCC--cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCC-------cchhhcCCC
Q 010182 212 QVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLET-------LPDSIGLLD 277 (516)
Q Consensus 212 ~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-------l~~~l~~l~ 277 (516)
.|+|..+.++ .....+..+.+|+.|+++++.++ .++..+...++|++|+++++.+.. ++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667777665 44455677788999999999985 456677788889999999988773 234567788
Q ss_pred CCcEEEeeCCCCCC-CCcccccCC---CCcEEeCCCCCCCcCChh----hhhcC-CCCcEEecCCCCCc-----cccchh
Q 010182 278 NLKILDVSGNKLSA-LPDSISHCR---SLVELDASFNRLAYLPTN----IGHEL-VNLQKLLVPLNKIR-----FLPTSI 343 (516)
Q Consensus 278 ~L~~L~Ls~n~l~~-l~~~l~~l~---~L~~L~L~~n~l~~l~~~----~~~~l-~~L~~L~L~~n~l~-----~l~~~l 343 (516)
+|+.|++++|.+.. .+..+..+. +|++|++++|.++..... ....+ ++|+.|++++|.++ .+...+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 161 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKAL 161 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHH
Confidence 99999999998863 333444444 499999999987631111 12234 78899999988877 344456
Q ss_pred cCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCch-hhh
Q 010182 344 GEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHALP-NTF 414 (516)
Q Consensus 344 ~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~lp-~~l 414 (516)
..+++|++|++++|.+++ ++..+..+++|+.|++++|.+.... +...+..+++|++|++++|.+++.. ..+
T Consensus 162 ~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 162 RANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred HhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHH
Confidence 677788899998888874 4445666778899999888654222 3345667788899999988888531 111
Q ss_pred -c----CCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC----cccc-
Q 010182 415 -G----RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT----GWLT- 484 (516)
Q Consensus 415 -~----~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~----~~~~- 484 (516)
. ..+.|+.|++++|.+++.+...+... +...++++.+++++|+++...... .-..
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~---------------~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~ 306 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEV---------------LAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHH---------------HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcC
Confidence 1 24788889998888875433322211 123356778888888888652211 1111
Q ss_pred ccccEEEccCCc
Q 010182 485 RSTSWLKTVGEN 496 (516)
Q Consensus 485 ~~l~~l~l~~N~ 496 (516)
+.+..+++.+|.
T Consensus 307 ~~~~~~~~~~~~ 318 (319)
T cd00116 307 NELESLWVKDDS 318 (319)
T ss_pred CchhhcccCCCC
Confidence 355666666654
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.69 E-value=1.1e-18 Score=169.68 Aligned_cols=268 Identities=23% Similarity=0.244 Sum_probs=198.0
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC-C
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG-N 287 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~-n 287 (516)
..++.++.+++.+|..+. +..+.++|..|+|+.||+ +|+.+++|+.|||++|.|+.| |++|.++.+|..|-+-+ |
T Consensus 49 ~~VdCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 49 GIVDCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred ceEEccCCCcccCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 457888889999987654 667889999999999965 899999999999999999977 56899999988887766 8
Q ss_pred CCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC---c
Q 010182 288 KLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG---L 362 (516)
Q Consensus 288 ~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~---l 362 (516)
+|+.+|. .|.++.+|+-|.+.-|.+..+....+..+++|..|.+..|.+..++. .+..+..++.+.+..|.+.. +
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 9999975 47779999999999999999999999999999999999999998887 77888889999888776321 1
Q ss_pred ----------chhhCCCCCCcEEEcccC------------------------CCCCCCcc-hhhcCCCCccEEeccCCCC
Q 010182 363 ----------PATIGKLTNLEILNVSSN------------------------FTDMKELP-ETFGELTNLKELDLSNNQI 407 (516)
Q Consensus 363 ----------~~~l~~l~~L~~L~L~~n------------------------~~~~~~l~-~~l~~l~~L~~L~L~~n~i 407 (516)
+..++......-..+... ...+...| ..|..+++|+.|+|++|+|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i 286 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKI 286 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCcc
Confidence 111121111111111111 11111112 2345566666666666666
Q ss_pred CCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcccccc
Q 010182 408 HALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRS 486 (516)
Q Consensus 408 ~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~ 486 (516)
+.+. .+|.....+++|.|..|+|..+...+| .....++.|+|.+|+|+...+-++-...+
T Consensus 287 ~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f-------------------~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 287 TRIEDGAFEGAAELQELYLTRNKLEFVSSGMF-------------------QGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred chhhhhhhcchhhhhhhhcCcchHHHHHHHhh-------------------hccccceeeeecCCeeEEEecccccccce
Confidence 6653 566666666666666666654433332 24567888999999999998888888889
Q ss_pred ccEEEccCCcccc
Q 010182 487 TSWLKTVGENVSG 499 (516)
Q Consensus 487 l~~l~l~~N~ls~ 499 (516)
++.+++-+|.+-.
T Consensus 348 l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 348 LSTLNLLSNPFNC 360 (498)
T ss_pred eeeeehccCcccC
Confidence 9999999997654
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.55 E-value=1.2e-16 Score=161.97 Aligned_cols=211 Identities=36% Similarity=0.589 Sum_probs=143.0
Q ss_pred EEEeecCCCCcchHhh--cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCC
Q 010182 212 QVDLSSRGLRFLPEAF--GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKL 289 (516)
Q Consensus 212 ~L~L~~~~l~~l~~~~--~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l 289 (516)
+|.|++..++.+|..- ..+..-...+++.|.+..+|..+..+..|+.|.|..|.+..+|..+.++..|++|||+.|++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence 3555565555554311 12233344555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCC
Q 010182 290 SALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKL 369 (516)
Q Consensus 290 ~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l 369 (516)
+.+|..++. --|+.|-+++|+++.+|..++....|..||.+.|.+..+|..++.+
T Consensus 134 S~lp~~lC~-------------------------lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l 188 (722)
T KOG0532|consen 134 SHLPDGLCD-------------------------LPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL 188 (722)
T ss_pred hcCChhhhc-------------------------CcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhH
Confidence 444444433 3355566666666666666666677888888888888888888888
Q ss_pred CCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHH
Q 010182 370 TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFM 449 (516)
Q Consensus 370 ~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~ 449 (516)
.+|+.|++..| ....+|..+..+ .|..||++.|+|+.+|-.|.++..|++|-|.+|+|..+|..++.+|.-++..|+
T Consensus 189 ~slr~l~vrRn--~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL 265 (722)
T KOG0532|consen 189 TSLRDLNVRRN--HLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYL 265 (722)
T ss_pred HHHHHHHHhhh--hhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeee
Confidence 88888888888 556778877754 588999999999999999999999999999999999999999988876665554
Q ss_pred h
Q 010182 450 A 450 (516)
Q Consensus 450 ~ 450 (516)
.
T Consensus 266 ~ 266 (722)
T KOG0532|consen 266 S 266 (722)
T ss_pred c
Confidence 4
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=1.5e-14 Score=139.39 Aligned_cols=226 Identities=22% Similarity=0.249 Sum_probs=179.7
Q ss_pred hCCCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCC----Ccc-------hhhcCCCCccEEEeeCCCCC--
Q 010182 206 AGKSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLE----VIP-------DSIAGLVNLEELNLASNLLE-- 267 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~----~l~-------~~l~~l~~L~~L~Ls~n~l~-- 267 (516)
....++.++|++|.+. .+.+.+.+.++|+..++++-..+ .+| .++..+++|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 3478999999999986 56667888899999999876433 333 45667889999999999887
Q ss_pred C---cchhhcCCCCCcEEEeeCCCCCCC--------------CcccccCCCCcEEeCCCCCCCcCCh----hhhhcCCCC
Q 010182 268 T---LPDSIGLLDNLKILDVSGNKLSAL--------------PDSISHCRSLVELDASFNRLAYLPT----NIGHELVNL 326 (516)
Q Consensus 268 ~---l~~~l~~l~~L~~L~Ls~n~l~~l--------------~~~l~~l~~L~~L~L~~n~l~~l~~----~~~~~l~~L 326 (516)
. +...+.++..|++|.|.+|.+... .....+-++|+.+....|.+..-+. ..+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 2 233567789999999999988722 2234567889999999999875543 345567899
Q ss_pred cEEecCCCCCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCcch---hh-c
Q 010182 327 QKLLVPLNKIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKELPE---TF-G 392 (516)
Q Consensus 327 ~~L~L~~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l~~---~l-~ 392 (516)
+.+.+..|.|. .+..++..+++|+.|||.+|.++. +...++.+++|+.|++++|.+...+.-. .+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 99999999887 345678999999999999999987 6678899999999999999776555322 22 3
Q ss_pred CCCCccEEeccCCCCCC-----chhhhcCCCcccEEecccCCCC
Q 010182 393 ELTNLKELDLSNNQIHA-----LPNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 393 ~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~N~l~ 431 (516)
..++|+.|.+.+|.|+. +..++...+.|..|+|++|.++
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 47899999999999982 3456777999999999999995
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.47 E-value=7.3e-14 Score=144.99 Aligned_cols=201 Identities=37% Similarity=0.535 Sum_probs=163.9
Q ss_pred EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCC-CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCC
Q 010182 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLD-NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLA 313 (516)
Q Consensus 235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~-~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~ 313 (516)
.+.+..+.+..-...+..++.++.|++.+|.++.++.....+. +|+.|++++|.+..++..+..+++|+.|++++|+++
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5777777775444555666788889999998888888776674 899999999988888778888899999999999988
Q ss_pred cCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcC
Q 010182 314 YLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGE 393 (516)
Q Consensus 314 ~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~ 393 (516)
.++.... ..++|+.|++++|++..+|..+..+..|++|.+++|.+..++..+.++.++..+.+.+|. ...++..++.
T Consensus 177 ~l~~~~~-~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~--~~~~~~~~~~ 253 (394)
T COG4886 177 DLPKLLS-NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK--LEDLPESIGN 253 (394)
T ss_pred hhhhhhh-hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce--eeeccchhcc
Confidence 8887654 378899999999999988887777777999999999777777788888888888888884 3444677888
Q ss_pred CCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 394 LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 394 l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
+++++.|++++|.++.++. ++.+.+|+.|++++|.+...+.....
T Consensus 254 l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~ 298 (394)
T COG4886 254 LSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPLIAL 298 (394)
T ss_pred ccccceecccccccccccc-ccccCccCEEeccCccccccchhhhc
Confidence 8889999999999999876 88889999999999998877655544
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.43 E-value=5e-15 Score=150.37 Aligned_cols=193 Identities=33% Similarity=0.446 Sum_probs=169.5
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK 288 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~ 288 (516)
.....|++.|.+..+|..++.+..|..+.|..|.+..+|..+.++..|++|+|+.|+++.+|..+..++ |+.|-+++|+
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc
Confidence 345689999999999999999999999999999999999999999999999999999999999876554 9999999999
Q ss_pred CCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCC
Q 010182 289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK 368 (516)
Q Consensus 289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~ 368 (516)
++.+|..++...+|..|+.+.|.+..++..... +.+|+.|.+..|.+..+|..+..+ .|..||+++|++..+|-.+.+
T Consensus 155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~-l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY-LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred cccCCcccccchhHHHhhhhhhhhhhchHHhhh-HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhh
Confidence 999999999999999999999999999998875 999999999999999999988844 589999999999999999999
Q ss_pred CCCCcEEEcccCCCCCCCcchhhc---CCCCccEEeccCCC
Q 010182 369 LTNLEILNVSSNFTDMKELPETFG---ELTNLKELDLSNNQ 406 (516)
Q Consensus 369 l~~L~~L~L~~n~~~~~~l~~~l~---~l~~L~~L~L~~n~ 406 (516)
++.|++|-|.+|.+. .=|..++ ...-.++|+..-|+
T Consensus 233 m~~Lq~l~LenNPLq--SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQ--SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred hhhheeeeeccCCCC--CChHHHHhccceeeeeeecchhcc
Confidence 999999999999543 3333332 22235778877774
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.43 E-value=1.2e-13 Score=143.27 Aligned_cols=197 Identities=38% Similarity=0.505 Sum_probs=168.1
Q ss_pred EEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCC-CccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCC
Q 010182 212 QVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLV-NLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLS 290 (516)
Q Consensus 212 ~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~-~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 290 (516)
.+++..+.+......+..++.++.|++.+|.++.++.....+. +|+.|++++|.+..+|..+..+++|+.|++++|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5778888775444555666889999999999999988777774 999999999999999878889999999999999999
Q ss_pred CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCC
Q 010182 291 ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLT 370 (516)
Q Consensus 291 ~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~ 370 (516)
.++...+..+.|+.|++++|++..++.... ....|++|.+++|.+...+..+..+.++..|.+.+|++..++..+..++
T Consensus 177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~-~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~ 255 (394)
T COG4886 177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIE-LLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLS 255 (394)
T ss_pred hhhhhhhhhhhhhheeccCCccccCchhhh-hhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcccc
Confidence 998877788999999999999999988753 2566999999999877777888889999999999999988888899999
Q ss_pred CCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchh
Q 010182 371 NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPN 412 (516)
Q Consensus 371 ~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~ 412 (516)
++++|++++|.+ ..++. ++.+.+++.|++++|.+..++.
T Consensus 256 ~l~~L~~s~n~i--~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 256 NLETLDLSNNQI--SSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccceeccccccc--ccccc-ccccCccCEEeccCccccccch
Confidence 999999999954 45544 8888999999999999886653
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.42 E-value=3.1e-14 Score=137.17 Aligned_cols=249 Identities=21% Similarity=0.230 Sum_probs=153.9
Q ss_pred HhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC----Ccch-------hhcCCCCCcEEEeeCCC
Q 010182 225 EAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE----TLPD-------SIGLLDNLKILDVSGNK 288 (516)
Q Consensus 225 ~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~----~l~~-------~l~~l~~L~~L~Ls~n~ 288 (516)
+....+..++.++|++|.++ .+...+...++|+..++++-... .+|. ++-..++|++||||+|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34566788999999999988 45677888889999999875332 4443 33455689999999987
Q ss_pred CC-----CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC--
Q 010182 289 LS-----ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG-- 361 (516)
Q Consensus 289 l~-----~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-- 361 (516)
+. .+-.-+.++..|++|.|.+|.+......... ..|..|. ....+.+.+.|+++..+.|++..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~--~al~~l~--------~~kk~~~~~~Lrv~i~~rNrlen~g 173 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLG--RALFELA--------VNKKAASKPKLRVFICGRNRLENGG 173 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHH--HHHHHHH--------HHhccCCCcceEEEEeecccccccc
Confidence 76 1223456688888888888887644333211 0111111 01123344566777777776655
Q ss_pred ---cchhhCCCCCCcEEEcccCCCCCCCc---chhhcCCCCccEEeccCCCCC-----CchhhhcCCCcccEEecccCCC
Q 010182 362 ---LPATIGKLTNLEILNVSSNFTDMKEL---PETFGELTNLKELDLSNNQIH-----ALPNTFGRLDKLIKLNLEENPM 430 (516)
Q Consensus 362 ---l~~~l~~l~~L~~L~L~~n~~~~~~l---~~~l~~l~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~N~l 430 (516)
+...+...+.|+.+.+..|.|...++ ...+..+++|+.|||..|-++ .+...+..+++|+.|++++|.+
T Consensus 174 a~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll 253 (382)
T KOG1909|consen 174 ATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL 253 (382)
T ss_pred HHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence 33455666677777777775554443 234556677777777777666 2345666677777777777777
Q ss_pred CCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC----ccccccccEEEccCCcc
Q 010182 431 VIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT----GWLTRSTSWLKTVGENV 497 (516)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~----~~~~~~l~~l~l~~N~l 497 (516)
..-+...+...+.. ..+.+.++++.+|.|+...... ....+.+..|++++|++
T Consensus 254 ~~~Ga~a~~~al~~--------------~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 254 ENEGAIAFVDALKE--------------SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccHHHHHHHHhc--------------cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 76665554433221 2456677777777766543221 12245566777777777
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=7.7e-13 Score=147.56 Aligned_cols=256 Identities=21% Similarity=0.192 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHHhhcCCC-----C--ChhhHHHHHHHHHHhhHHHHhhhhhhhhcccCccchhHHH--HHHHHhHH----
Q 010182 69 AIHDVYQTRSVLQTLGPR-----P--DHETIDKTKARIVEIDSELAKSLEGIVHSIRETDVDQFEW--RVQLADKE---- 135 (516)
Q Consensus 69 ~~~~v~~~~~~l~~~~~~-----p--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~el~--~~l~~~~~---- 135 (516)
....+.||+.+...+... + ...+..+..++|+.+..+.+..|..+|.++...+|+.+-. .|+.+.--
T Consensus 368 ~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~ 447 (889)
T KOG4658|consen 368 CKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLD 447 (889)
T ss_pred CCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccc
Confidence 333588999999988765 2 3355689999999999889999999999998887766543 33332200
Q ss_pred -HHHHHHHHH---HHHHHhhhhhHH---------HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCccccccHHHHHHh
Q 010182 136 -KALREDSAK---EKNACKKILELD---------DMHEAYEKMLKEAEERLVKIYERAENGEEEVPPVREEVNEEVMGLL 202 (516)
Q Consensus 136 -~~~~~~~~~---~~~~~~~l~~~~---------~~h~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 202 (516)
.+.-+.... +.-..+++.... .|||.+.+|.-.+...+.+-. ++ .....+.. .....
T Consensus 448 ~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~---e~---~iv~~~~~----~~~~~ 517 (889)
T KOG4658|consen 448 GGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQE---EN---QIVSDGVG----LSEIP 517 (889)
T ss_pred cccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccc---cc---eEEECCcC----ccccc
Confidence 001011110 111112232222 388888888766653221100 00 00000000 00000
Q ss_pred HHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCC--CCCcch-hhcCCCCccEEEeeCC-CCCCcchhhcCCCC
Q 010182 203 QEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNH--LEVIPD-SIAGLVNLEELNLASN-LLETLPDSIGLLDN 278 (516)
Q Consensus 203 ~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~--l~~l~~-~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~ 278 (516)
+......++...+.++.+..++.... ++.|++|-+..|. +..++. .|..++.|+.|||++| .+..+|..++.+-+
T Consensus 518 ~~~~~~~~rr~s~~~~~~~~~~~~~~-~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKIEHIAGSSE-NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred cccchhheeEEEEeccchhhccCCCC-CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 01112456777777777776655433 3478888888775 555543 3677888888888876 66788888888888
Q ss_pred CcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCC
Q 010182 279 LKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335 (516)
Q Consensus 279 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 335 (516)
|++|+++++.+..+|.++.++.+|.+|++..+.-......+...+.+|++|.+....
T Consensus 597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 888888888888888888888888888888776433334445457777777775544
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6e-14 Score=138.65 Aligned_cols=201 Identities=27% Similarity=0.269 Sum_probs=89.6
Q ss_pred CCccEEEeecCCCCcch--HhhcCCCCCcEEEeecCCCCC---cchhhcCCCCccEEEeeCCCCCCcchh--hcCCCCCc
Q 010182 208 KSLEQVDLSSRGLRFLP--EAFGRIAGLRLMSLSNNHLEV---IPDSIAGLVNLEELNLASNLLETLPDS--IGLLDNLK 280 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~Ls~n~l~~---l~~~l~~l~~L~~L~Ls~n~l~~l~~~--l~~l~~L~ 280 (516)
+.|+.+.|.++.+...+ .....|++++.|||+.|-+.. +......+|+|+.|+++.|.+.....+ -..+++|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 44555555555554443 234455555666666554442 223334555555555555555432211 11344555
Q ss_pred EEEeeCCCCC--CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCC
Q 010182 281 ILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE 358 (516)
Q Consensus 281 ~L~Ls~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~ 358 (516)
.|.|+.|.++ .+-..+..+++|+.|+|.+|. .+.........++.|++|||++|.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~-----------------------~~~~~~~~~~i~~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE-----------------------IILIKATSTKILQTLQELDLSNNN 257 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc-----------------------ccceecchhhhhhHHhhccccCCc
Confidence 5555555554 121222334455555555552 111111122223344445555544
Q ss_pred CCCcc--hhhCCCCCCcEEEcccCCCCCCCcchh-----hcCCCCccEEeccCCCCCCch--hhhcCCCcccEEecccCC
Q 010182 359 LHGLP--ATIGKLTNLEILNVSSNFTDMKELPET-----FGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENP 429 (516)
Q Consensus 359 l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~-----l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~N~ 429 (516)
+.+++ ...+.++.|+.|+++.|.+.....|+. ...+++|+.|++..|+|.+++ ..+..+++|+.|.+..|.
T Consensus 258 li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ 337 (505)
T KOG3207|consen 258 LIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY 337 (505)
T ss_pred ccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence 44433 233444455555555443332222222 223445555555555554443 333444555555555555
Q ss_pred CC
Q 010182 430 MV 431 (516)
Q Consensus 430 l~ 431 (516)
+.
T Consensus 338 ln 339 (505)
T KOG3207|consen 338 LN 339 (505)
T ss_pred cc
Confidence 44
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.34 E-value=4.1e-13 Score=126.80 Aligned_cols=201 Identities=27% Similarity=0.294 Sum_probs=134.5
Q ss_pred hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC--CCC--CCCcccccCCCC
Q 010182 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN--KLS--ALPDSISHCRSL 302 (516)
Q Consensus 227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n--~l~--~l~~~l~~l~~L 302 (516)
+.-+++|..+.++.+.-..+-+....-|.|+++...+..+...|..+ ....+ -|.++- ... .+-..+...+.|
T Consensus 210 l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~-pe~~~--~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 210 LNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLL-PETIL--ADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred hHHhhhhheeeeeccchhheeceeecCchhheeeeeccccccccccc-chhhh--cCccCCCCCccCCceEEecchHhhh
Confidence 34455666666666654444333333456666666655554332210 11111 111111 000 011122335568
Q ss_pred cEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCC
Q 010182 303 VELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFT 382 (516)
Q Consensus 303 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~ 382 (516)
+++||++|.|+.+...+- -.+.++.|+++.|+|..+. .+..+.+|+.|||++|.++.+..+-.++-++++|.|++|.+
T Consensus 287 telDLS~N~I~~iDESvK-L~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~i 364 (490)
T KOG1259|consen 287 TELDLSGNLITQIDESVK-LAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKI 364 (490)
T ss_pred hhccccccchhhhhhhhh-hccceeEEeccccceeeeh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhH
Confidence 889999999888877655 3788999999999988773 48888899999999999888777777888899999999943
Q ss_pred CCCCcchhhcCCCCccEEeccCCCCCCch--hhhcCCCcccEEecccCCCCCCCH
Q 010182 383 DMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 383 ~~~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
..+ ..++.+-+|..||+++|+|..+. ..++++|.|+.|.|.+|++...+.
T Consensus 365 --E~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 365 --ETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred --hhh-hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 343 35667778999999999998775 678899999999999999987653
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.30 E-value=1.7e-12 Score=117.45 Aligned_cols=125 Identities=33% Similarity=0.456 Sum_probs=39.5
Q ss_pred CCCCccEEEeeCCCCCCcchhhc-CCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEe
Q 010182 252 GLVNLEELNLASNLLETLPDSIG-LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL 330 (516)
Q Consensus 252 ~l~~L~~L~Ls~n~l~~l~~~l~-~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 330 (516)
+..++++|+|++|.|+.+. .++ .+.+|+.|++++|.|+.+ +++..++.|++|++++|.|+.+...+...+++|+.|+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3345566666666666553 233 355666666666666666 3455666666666666666666544433466666666
Q ss_pred cCCCCCcccc--chhcCCCCCcEEEccCCCCCCcc----hhhCCCCCCcEEEcc
Q 010182 331 VPLNKIRFLP--TSIGEMASLRHLDAHFNELHGLP----ATIGKLTNLEILNVS 378 (516)
Q Consensus 331 L~~n~l~~l~--~~l~~l~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~ 378 (516)
+++|+|..+. ..+..+++|++|++.+|.++.-+ ..+..+++|+.||-.
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 6666665432 24455666777777776665522 244556666666544
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.28 E-value=5.2e-13 Score=126.11 Aligned_cols=200 Identities=21% Similarity=0.197 Sum_probs=124.1
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCC--CcchhhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLE--TLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls 285 (516)
.+|..+.++++.-+.+-.....-+.|.++.+.+..+...|. +-....+.-+....-... .+-..+.....|++|||+
T Consensus 214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~-l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS 292 (490)
T KOG1259|consen 214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPS-LLPETILADPSGSEPSTSNGSALVSADTWQELTELDLS 292 (490)
T ss_pred hhhheeeeeccchhheeceeecCchhheeeeeccccccccc-ccchhhhcCccCCCCCccCCceEEecchHhhhhhcccc
Confidence 34555555555433332222222566677766665543221 111111111111111111 111123345667788888
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 365 (516)
+|.|+.+..++.-.+.++.|+++.|.|..+.. ...+++|+.||+++|.+..+...-..+.+.++|.|++|.+.++ +.
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~L-SG 369 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETL-SG 369 (490)
T ss_pred ccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhh-hh
Confidence 88887777777777788888888888776655 2347788888888887776655555667788888888887776 45
Q ss_pred hCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411 (516)
Q Consensus 366 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp 411 (516)
+.++-+|..|++++|.|.--+--..+++++.|+.|.|.+|.+..++
T Consensus 370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 6777788888888886643333456888999999999999888765
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=3.4e-12 Score=115.56 Aligned_cols=126 Identities=24% Similarity=0.268 Sum_probs=42.9
Q ss_pred CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh-CCCCCCcEEEc
Q 010182 299 CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI-GKLTNLEILNV 377 (516)
Q Consensus 299 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~L 377 (516)
+.++++|+|.+|.|+.+.. ....+.+|+.|++++|.|+.+ +.+..++.|++|++++|.|+++...+ ..+++|+.|++
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S---TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 3445555555555554432 222245555555555555555 24555666777777777777665433 34667777777
Q ss_pred ccCCCCCCCcchhhcCCCCccEEeccCCCCCCch----hhhcCCCcccEEecc
Q 010182 378 SSNFTDMKELPETFGELTNLKELDLSNNQIHALP----NTFGRLDKLIKLNLE 426 (516)
Q Consensus 378 ~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp----~~l~~l~~L~~L~L~ 426 (516)
++|.+..-.--..+..+++|+.|+|.+|.++..+ ..+..+|+|+.||-.
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 7776543222345667777888888888777543 456778888887543
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=9.4e-13 Score=130.31 Aligned_cols=177 Identities=22% Similarity=0.228 Sum_probs=125.6
Q ss_pred CCCccEEEeecCCCCc---chHhhcCCCCCcEEEeecCCCCCcchh--hcCCCCccEEEeeCCCCC--CcchhhcCCCCC
Q 010182 207 GKSLEQVDLSSRGLRF---LPEAFGRIAGLRLMSLSNNHLEVIPDS--IAGLVNLEELNLASNLLE--TLPDSIGLLDNL 279 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~---l~~~~~~l~~L~~L~Ls~n~l~~l~~~--l~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L 279 (516)
+++++.|||++|-+.. +......+++|+.|+++.|.+....++ -..+++|+.|.|+.|.++ ++-..+..+++|
T Consensus 145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 3889999999998763 344567899999999999988744222 235789999999999999 443445678999
Q ss_pred cEEEeeCCC-CCCCCcccccCCCCcEEeCCCCCCCcCChh-hhhcCCCCcEEecCCCCCccc--cch-----hcCCCCCc
Q 010182 280 KILDVSGNK-LSALPDSISHCRSLVELDASFNRLAYLPTN-IGHELVNLQKLLVPLNKIRFL--PTS-----IGEMASLR 350 (516)
Q Consensus 280 ~~L~Ls~n~-l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~l--~~~-----l~~l~~L~ 350 (516)
+.|+|..|. +..-......++.|++|+|++|++-..+.. ....++.|..|+++.|++.++ |.. .....+|+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~ 304 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLE 304 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccce
Confidence 999999995 322223344578899999999998766632 223488888888888888754 222 24456777
Q ss_pred EEEccCCCCCCcch--hhCCCCCCcEEEcccCCCC
Q 010182 351 HLDAHFNELHGLPA--TIGKLTNLEILNVSSNFTD 383 (516)
Q Consensus 351 ~L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~~~ 383 (516)
+|++..|++.+.++ .+..+.+|+.|.+..|.+.
T Consensus 305 ~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 305 YLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred eeecccCccccccccchhhccchhhhhhccccccc
Confidence 77777777766433 4555566666666666543
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.14 E-value=3.7e-12 Score=132.92 Aligned_cols=220 Identities=30% Similarity=0.379 Sum_probs=142.9
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
.++..|++.+|.|+.+...+..+++|++|++++|.|+.+ .++..++.|+.|++++|.|+.+.. +..+..|+.+++++|
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l~~n 172 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDLSYN 172 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-CccchhhhcccCCcc
Confidence 567777777777776655466677777777777777766 345566667777777777776643 445777777777777
Q ss_pred CCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCC--CcEEEccCCCCCCcch
Q 010182 288 KLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMAS--LRHLDAHFNELHGLPA 364 (516)
Q Consensus 288 ~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~--L~~L~Ls~n~l~~l~~ 364 (516)
.+..+... +..+.+++.+++.+|.+..+..... +..+..+++..|.+..+ ..+..+.. |+.+++++|.+..++.
T Consensus 173 ~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~--~~~l~~~~l~~n~i~~~-~~l~~~~~~~L~~l~l~~n~i~~~~~ 249 (414)
T KOG0531|consen 173 RIVDIENDELSELISLEELDLGGNSIREIEGLDL--LKKLVLLSLLDNKISKL-EGLNELVMLHLRELYLSGNRISRSPE 249 (414)
T ss_pred hhhhhhhhhhhhccchHHHhccCCchhcccchHH--HHHHHHhhcccccceec-cCcccchhHHHHHHhcccCccccccc
Confidence 77766432 4566777777777777665443222 34444446666666654 22333333 7788888888887766
Q ss_pred hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc---h--hhhcCCCcccEEecccCCCCCCCH
Q 010182 365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL---P--NTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l---p--~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.+..+..+..|++.+|.+. .+ ..+.....+..+....+.+... . ......+++..+.+.+|++.....
T Consensus 250 ~~~~~~~l~~l~~~~n~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 250 GLENLKNLPVLDLSSNRIS--NL-EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred cccccccccccchhhcccc--cc-ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 6777788888888887543 21 2244556667777777766521 1 225667888888899888876543
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=99.07 E-value=9.6e-12 Score=129.81 Aligned_cols=217 Identities=30% Similarity=0.420 Sum_probs=140.8
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
..++.+++..|.+...-..+..+++|..|++.+|.|..+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 345555667777666444566777888888888888877555677788888888888888774 3556677888888888
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
.|..+ ..+..+..|+.+++++|.+..+.......+.+++.+++.+|.+..+ ..+..+..+..+++..|.++.+-. +.
T Consensus 151 ~i~~~-~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~-l~ 227 (414)
T KOG0531|consen 151 LISDI-SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG-LN 227 (414)
T ss_pred cchhc-cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC-cc
Confidence 87776 4555577788888888877766651023477777777877777755 334444455555667776666421 22
Q ss_pred CCC--CCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182 368 KLT--NLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 368 ~l~--~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~ 431 (516)
.+. .|+.+++++|.+ ..++..+..+..+..|++.+|++..+. .+...+.+..+....|++.
T Consensus 228 ~~~~~~L~~l~l~~n~i--~~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 228 ELVMLHLRELYLSGNRI--SRSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLA 290 (414)
T ss_pred cchhHHHHHHhcccCcc--ccccccccccccccccchhhccccccc-cccccchHHHhccCcchhc
Confidence 222 267777777743 333244556677777777777776553 3445556666666666655
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.93 E-value=9.4e-10 Score=123.10 Aligned_cols=229 Identities=23% Similarity=0.253 Sum_probs=142.6
Q ss_pred hCCCccEEEeecCC--CCcchH-hhcCCCCCcEEEeecC-CCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcE
Q 010182 206 AGKSLEQVDLSSRG--LRFLPE-AFGRIAGLRLMSLSNN-HLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKI 281 (516)
Q Consensus 206 ~~~~L~~L~L~~~~--l~~l~~-~~~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~ 281 (516)
.++.+++|-+.+|. +..++. .|..++.|++|||++| .+..+|..++.+-+|++|+++++.|+.+|..++++..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 44679999999886 565554 4888999999999987 6779999999999999999999999999999999999999
Q ss_pred EEeeCCC-CCCCCcccccCCCCcEEeCCCCCCCcCChhhh---hcCCCCcEEecCCCCCccccchhcCCCCCc----EEE
Q 010182 282 LDVSGNK-LSALPDSISHCRSLVELDASFNRLAYLPTNIG---HELVNLQKLLVPLNKIRFLPTSIGEMASLR----HLD 353 (516)
Q Consensus 282 L~Ls~n~-l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~---~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~----~L~ 353 (516)
||+..+. +..++.....+++|++|.+...... ...... ..+.+|+.+....... .+...+..+..|. .+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLSITISSV-LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhheeecchh-HhHhhhhhhHHHHHHhHhhh
Confidence 9999885 3445555566999999998766521 111111 2344444444433222 1111122222222 233
Q ss_pred ccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhc-----C-CCCccEEeccCCCCCCchhhhcCCCcccEEeccc
Q 010182 354 AHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFG-----E-LTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427 (516)
Q Consensus 354 Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~-----~-l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 427 (516)
+.++.....+..+..+.+|+.|.+.++.+....+ .+.. . ++++..+.+.+|..-..+.+....++|+.|.+..
T Consensus 701 ~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 701 IEGCSKRTLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVS 779 (889)
T ss_pred hcccccceeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEec
Confidence 2334444455566677777777777764321111 1110 1 2234444444443333344445566777777777
Q ss_pred CCCCCCCHHH
Q 010182 428 NPMVIPPVEV 437 (516)
Q Consensus 428 N~l~~~~~~~ 437 (516)
++....+...
T Consensus 780 ~~~~e~~i~~ 789 (889)
T KOG4658|consen 780 CRLLEDIIPK 789 (889)
T ss_pred ccccccCCCH
Confidence 7665554433
No 39
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.88 E-value=1.4e-09 Score=101.98 Aligned_cols=239 Identities=20% Similarity=0.204 Sum_probs=164.9
Q ss_pred cHHHHHHhHHh-hCCCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCC----Cc-------chhhcCCCCcc
Q 010182 195 NEEVMGLLQEA-AGKSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLE----VI-------PDSIAGLVNLE 257 (516)
Q Consensus 195 ~~~~~~~l~~~-~~~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~----~l-------~~~l~~l~~L~ 257 (516)
.+++..++.+. ....++.++|++|.|. .+...+.+-.+|+..+++.-..+ .+ ..++.+||+|+
T Consensus 16 ~eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~ 95 (388)
T COG5238 16 KEDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQ 95 (388)
T ss_pred cchhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcce
Confidence 33444443332 2467899999999987 56667777889999999876443 22 34567899999
Q ss_pred EEEeeCCCCC-Ccc----hhhcCCCCCcEEEeeCCCCCCCCc--------------ccccCCCCcEEeCCCCCCCcCChh
Q 010182 258 ELNLASNLLE-TLP----DSIGLLDNLKILDVSGNKLSALPD--------------SISHCRSLVELDASFNRLAYLPTN 318 (516)
Q Consensus 258 ~L~Ls~n~l~-~l~----~~l~~l~~L~~L~Ls~n~l~~l~~--------------~l~~l~~L~~L~L~~n~l~~l~~~ 318 (516)
..+||.|.+. ..| +.++.-+.|.+|.+++|.+.-+.. ...+-+.|+.+....|++...+..
T Consensus 96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred eeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHH
Confidence 9999999887 333 356778899999999998874421 134567888898888888755543
Q ss_pred h----hhcCCCCcEEecCCCCCccc------cchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCC
Q 010182 319 I----GHELVNLQKLLVPLNKIRFL------PTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTD 383 (516)
Q Consensus 319 ~----~~~l~~L~~L~L~~n~l~~l------~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~ 383 (516)
. +..-.+|+.+.+..|.|+.- ...+..+.+|+.||+..|.++. +...+..++.|+.|.+..|.++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 2 22235788888888888721 2345667888888888888776 4556777788888888888666
Q ss_pred CCCcchhhc-----CCCCccEEeccCCCCC-----C--chhh-hcCCCcccEEecccCCCCCC
Q 010182 384 MKELPETFG-----ELTNLKELDLSNNQIH-----A--LPNT-FGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 384 ~~~l~~~l~-----~l~~L~~L~L~~n~i~-----~--lp~~-l~~l~~L~~L~L~~N~l~~~ 433 (516)
..+....+. ..++|..|....|.+. + ++.. =..+|-|..|-+.+|.|...
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 555544333 3467788888877544 1 2211 13567777888888887644
No 40
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.73 E-value=3.6e-09 Score=99.23 Aligned_cols=251 Identities=20% Similarity=0.169 Sum_probs=140.6
Q ss_pred HhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC----Ccc-------hhhcCCCCCcEEEeeCCC
Q 010182 225 EAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE----TLP-------DSIGLLDNLKILDVSGNK 288 (516)
Q Consensus 225 ~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~----~l~-------~~l~~l~~L~~L~Ls~n~ 288 (516)
..+..+..++.++||+|.|+ .++..+.+-.+|+..+++.-... .++ .++-++++|++.+||.|.
T Consensus 24 eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 24 EELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 34556788999999999887 45667777788888888865433 222 344567888888888887
Q ss_pred CC-CCC----cccccCCCCcEEeCCCCCCCcCChhhhh-cCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc
Q 010182 289 LS-ALP----DSISHCRSLVELDASFNRLAYLPTNIGH-ELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL 362 (516)
Q Consensus 289 l~-~l~----~~l~~l~~L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l 362 (516)
++ ..| +.+++.+.|++|.+++|.+..+...-.. .+.. +..| ....+-+.|++.+...|++...
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~-----la~n------KKaa~kp~Le~vicgrNRleng 172 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFH-----LAYN------KKAADKPKLEVVICGRNRLENG 172 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHH-----HHHH------hhhccCCCceEEEeccchhccC
Confidence 66 222 3456677788888888877644322110 0000 0000 1123334566666666655543
Q ss_pred ch-----hhCCCCCCcEEEcccCCCCCCCcch----hhcCCCCccEEeccCCCCCC-----chhhhcCCCcccEEecccC
Q 010182 363 PA-----TIGKLTNLEILNVSSNFTDMKELPE----TFGELTNLKELDLSNNQIHA-----LPNTFGRLDKLIKLNLEEN 428 (516)
Q Consensus 363 ~~-----~l~~l~~L~~L~L~~n~~~~~~l~~----~l~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~N 428 (516)
+. .+..-.+|+++.+..|.|.-.++.. .+..+.+|+.|||..|-++. +..++...+.|+.|.+..|
T Consensus 173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence 22 2233346666666666554333211 12234567777777776662 3355566666777777777
Q ss_pred CCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc-------cccccEEEccCCcccc
Q 010182 429 PMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL-------TRSTSWLKTVGENVSG 499 (516)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~-------~~~l~~l~l~~N~ls~ 499 (516)
-++..+...+-..+.. ..++++..|...+|.+.+..+...+. .+-+..+-+.||+|+.
T Consensus 253 lls~~G~~~v~~~f~e-------------~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 253 LLSNEGVKSVLRRFNE-------------KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred hhccccHHHHHHHhhh-------------hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 7766655443322221 13455566666666666655444332 2234455566666654
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=4.6e-10 Score=117.44 Aligned_cols=130 Identities=29% Similarity=0.407 Sum_probs=91.1
Q ss_pred CCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEccc
Q 010182 300 RSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSS 379 (516)
Q Consensus 300 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~ 379 (516)
..|...+.++|.+..+....- -++.|+.|+|+.|++..+. .+..++.|++|||++|.++.+|..-..-..|..|++++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLq-ll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQ-LLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHH-HHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 356666677777765544433 3677777777777777663 67777888888888888887766333333488888888
Q ss_pred CCCCCCCcchhhcCCCCccEEeccCCCCCCch--hhhcCCCcccEEecccCCCCCCC
Q 010182 380 NFTDMKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 380 n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
|. +..+ ..+.++.+|+.||++.|-|.... ..+..+..|+.|+|.||++..-+
T Consensus 242 N~--l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 242 NA--LTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred cH--HHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 83 3343 35677888888888888777543 45667788888889998887554
No 42
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=7.6e-09 Score=98.24 Aligned_cols=220 Identities=20% Similarity=0.160 Sum_probs=132.8
Q ss_pred EEEeecCCCCcchH--hh-cCCCCCcEEEeecCCCC---CcchhhcCCCCccEEEeeCCCCCCcchhh-cCCCCCcEEEe
Q 010182 212 QVDLSSRGLRFLPE--AF-GRIAGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLASNLLETLPDSI-GLLDNLKILDV 284 (516)
Q Consensus 212 ~L~L~~~~l~~l~~--~~-~~l~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~L 284 (516)
-+.+.++.|..... .| ..++.++.|+|.+|.|+ .+...+.++|.|++|+++.|++....+.+ ....+|++|-|
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL 128 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL 128 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE
Confidence 34445555543322 12 33566777888888777 34445677788888888887766433333 25567788888
Q ss_pred eCCCCC--CCCcccccCCCCcEEeCCCCCCCcCC--h-hhhhcCCCCcEEecCCCCCc---cccchhcCCCCCcEEEccC
Q 010182 285 SGNKLS--ALPDSISHCRSLVELDASFNRLAYLP--T-NIGHELVNLQKLLVPLNKIR---FLPTSIGEMASLRHLDAHF 356 (516)
Q Consensus 285 s~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~--~-~~~~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~ 356 (516)
.+..+. ..-..+..++.+++|.++.|++..+- . +.-..-+.+++|....|... ....--.-.+++..+.+..
T Consensus 129 NgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 129 NGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCE 208 (418)
T ss_pred cCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeec
Confidence 777665 33344556777777777777543211 1 11111234555555555432 1111123346777888888
Q ss_pred CCCCCcc--hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-----h--hhhcCCCcccEEeccc
Q 010182 357 NELHGLP--ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-----P--NTFGRLDKLIKLNLEE 427 (516)
Q Consensus 357 n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-----p--~~l~~l~~L~~L~L~~ 427 (516)
|.+.+.. ......+.+-.|+|+.|.++.-.--..+..++.|..|.++++.+.+- + -.++.+++++.|+=+
T Consensus 209 ~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs- 287 (418)
T KOG2982|consen 209 GPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS- 287 (418)
T ss_pred CcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc-
Confidence 8777743 24455667778889888765444445677888999999999887631 1 245778888887654
Q ss_pred CCCCCC
Q 010182 428 NPMVIP 433 (516)
Q Consensus 428 N~l~~~ 433 (516)
+|+..
T Consensus 288 -kIss~ 292 (418)
T KOG2982|consen 288 -KISSR 292 (418)
T ss_pred -ccchh
Confidence 56543
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=2.2e-09 Score=112.50 Aligned_cols=132 Identities=22% Similarity=0.250 Sum_probs=103.9
Q ss_pred CCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEec
Q 010182 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDL 402 (516)
Q Consensus 323 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L 402 (516)
+..|...+.++|.+..+..++.-++.|+.|+|+.|+++.+. .+..+++|++|||+.|.+ ..+|..-..-.+|+.|.|
T Consensus 163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L--~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCL--RHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchh--ccccccchhhhhheeeee
Confidence 45678889999999988889988999999999999999985 789999999999999954 555543222335999999
Q ss_pred cCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182 403 SNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGE 476 (516)
Q Consensus 403 ~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~ 476 (516)
+||.++++- .+.++.+|+.||+++|-|.+...- ..+.....|+.|.|.+|.+-+.
T Consensus 240 rnN~l~tL~-gie~LksL~~LDlsyNll~~hseL------------------~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 240 RNNALTTLR-GIENLKSLYGLDLSYNLLSEHSEL------------------EPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred cccHHHhhh-hHHhhhhhhccchhHhhhhcchhh------------------hHHHHHHHHHHHhhcCCccccC
Confidence 999999885 678899999999999988754332 2233445566677777776654
No 44
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=1.6e-07 Score=102.84 Aligned_cols=103 Identities=29% Similarity=0.501 Sum_probs=58.8
Q ss_pred CcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEEeeCCCCC-CCCcccccCCCCcEEeCCC
Q 010182 233 LRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASF 309 (516)
Q Consensus 233 L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~ 309 (516)
++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 455566666555 44555666666666666666665 55555666666666666666655 4555566666666666666
Q ss_pred CCCC-cCChhhhhcCCCCcEEecCCCC
Q 010182 310 NRLA-YLPTNIGHELVNLQKLLVPLNK 335 (516)
Q Consensus 310 n~l~-~l~~~~~~~l~~L~~L~L~~n~ 335 (516)
|.++ .+|..+.....++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 6654 4444433323345556666553
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.54 E-value=5.3e-08 Score=72.46 Aligned_cols=57 Identities=46% Similarity=0.675 Sum_probs=24.6
Q ss_pred CCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182 232 GLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK 288 (516)
Q Consensus 232 ~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~ 288 (516)
+|++|++++|++..++ ..|.++++|++|++++|.++.++. .|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 3444444444444443 234444444444444444444432 33444444444444443
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4.1e-09 Score=100.04 Aligned_cols=80 Identities=19% Similarity=0.179 Sum_probs=40.0
Q ss_pred CCcEEEccCCC----CCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch---hhhcCCCcc
Q 010182 348 SLRHLDAHFNE----LHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP---NTFGRLDKL 420 (516)
Q Consensus 348 ~L~~L~Ls~n~----l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp---~~l~~l~~L 420 (516)
+|+.|+++|+. ...+......+++|..|||++|..--.++-..+..++.|++|.++.|..- +| -.+...|.|
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl 365 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSL 365 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcce
Confidence 45555555541 11233334456666666666652111233334455666666666666321 11 134556677
Q ss_pred cEEecccC
Q 010182 421 IKLNLEEN 428 (516)
Q Consensus 421 ~~L~L~~N 428 (516)
.+|++.++
T Consensus 366 ~yLdv~g~ 373 (419)
T KOG2120|consen 366 VYLDVFGC 373 (419)
T ss_pred EEEEeccc
Confidence 77776664
No 47
>PLN03150 hypothetical protein; Provisional
Probab=98.51 E-value=2.3e-07 Score=101.58 Aligned_cols=104 Identities=24% Similarity=0.325 Sum_probs=76.6
Q ss_pred CccEEEeeCCCCC-CcchhhcCCCCCcEEEeeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecC
Q 010182 255 NLEELNLASNLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVP 332 (516)
Q Consensus 255 ~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 332 (516)
.++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..+++|+.|++++|.++......+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3677888888877 66777888888888888888876 677778888888888888888874333334468888888888
Q ss_pred CCCCc-cccchhcCC-CCCcEEEccCCC
Q 010182 333 LNKIR-FLPTSIGEM-ASLRHLDAHFNE 358 (516)
Q Consensus 333 ~n~l~-~l~~~l~~l-~~L~~L~Ls~n~ 358 (516)
+|.+. .+|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 88776 667666543 356677777764
No 48
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=8.4e-08 Score=71.37 Aligned_cols=35 Identities=46% Similarity=0.674 Sum_probs=13.8
Q ss_pred ccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCC
Q 010182 256 LEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLS 290 (516)
Q Consensus 256 L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~ 290 (516)
|++|++++|+|+.+|. .|..+++|++|++++|.++
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~ 38 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT 38 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSES
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC
Confidence 3444444444443332 3333344444444444333
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.48 E-value=6.2e-08 Score=92.16 Aligned_cols=201 Identities=19% Similarity=0.191 Sum_probs=140.6
Q ss_pred hCCCccEEEeecCCCC---cchHhhcCCCCCcEEEeecCCCCCcchhh-cCCCCccEEEeeCCCCC--CcchhhcCCCCC
Q 010182 206 AGKSLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSNNHLEVIPDSI-AGLVNLEELNLASNLLE--TLPDSIGLLDNL 279 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l-~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L 279 (516)
..+.++.+||.+|.|+ .+...+.+++.|++|+++.|.+...-..+ ....+|+.|-|.++.+. ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3478999999999998 45556789999999999999988443333 35679999999999777 444567788999
Q ss_pred cEEEeeCCCCCCC---Cccccc-CCCCcEEeCCCCCCCcC--ChhhhhcCCCCcEEecCCCCCccc--cchhcCCCCCcE
Q 010182 280 KILDVSGNKLSAL---PDSISH-CRSLVELDASFNRLAYL--PTNIGHELVNLQKLLVPLNKIRFL--PTSIGEMASLRH 351 (516)
Q Consensus 280 ~~L~Ls~n~l~~l---~~~l~~-l~~L~~L~L~~n~l~~l--~~~~~~~l~~L~~L~L~~n~l~~l--~~~l~~l~~L~~ 351 (516)
+.|.++.|.+..+ ...... -+.+++|....|....- -.....-.+++..+.+..|.+... ..+....+.+.-
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 9999999966533 111111 23566666666643210 011223478889999999988754 345556677778
Q ss_pred EEccCCCCCCcc--hhhCCCCCCcEEEcccCCCCCC-----CcchhhcCCCCccEEeccCCCCC
Q 010182 352 LDAHFNELHGLP--ATIGKLTNLEILNVSSNFTDMK-----ELPETFGELTNLKELDLSNNQIH 408 (516)
Q Consensus 352 L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~-----~l~~~l~~l~~L~~L~L~~n~i~ 408 (516)
|+|+.|+|.+.. +.+..++.|..|.+++|.+... ..--.++.+++++.|+ |-+|+
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN--GskIs 290 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN--GSKIS 290 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec--Ccccc
Confidence 999999998843 4788999999999999865421 1112356778888876 44676
No 50
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=7.3e-09 Score=98.39 Aligned_cols=215 Identities=20% Similarity=0.189 Sum_probs=145.9
Q ss_pred CCccEEEeecCCCC--cchHhhcCC-CCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcE
Q 010182 208 KSLEQVDLSSRGLR--FLPEAFGRI-AGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKI 281 (516)
Q Consensus 208 ~~L~~L~L~~~~l~--~l~~~~~~l-~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~ 281 (516)
..+..+.+....+. .+.+.+.-+ +.|++|||++..|+ .+-..++.+.+|+.|.+.++.+. .+...+....+|+.
T Consensus 159 rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 44555655543332 233333323 45899999999888 45566788999999999999998 45567888999999
Q ss_pred EEeeCC-CCCCC--CcccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCC----ccccchhcCCCCCcEE
Q 010182 282 LDVSGN-KLSAL--PDSISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKI----RFLPTSIGEMASLRHL 352 (516)
Q Consensus 282 L~Ls~n-~l~~l--~~~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l----~~l~~~l~~l~~L~~L 352 (516)
|+++.+ .+++. .--+.+|+.|..|+++-|.+.. +...+..--++|+.|+++++.- ..+..-...+++|.+|
T Consensus 239 lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~L 318 (419)
T KOG2120|consen 239 LNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHL 318 (419)
T ss_pred eccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeee
Confidence 999987 45533 2346789999999999998652 2222223356899999988742 2333345778999999
Q ss_pred EccCC-CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccE
Q 010182 353 DAHFN-ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIK 422 (516)
Q Consensus 353 ~Ls~n-~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~ 422 (516)
||++| .++. ....+.+++.|++|.++.|..-+...--.+...+.|.+|++.||-=. ..--....+++|+.
T Consensus 319 DLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vsdt~mel~~e~~~~lki 391 (419)
T KOG2120|consen 319 DLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVSDTTMELLKEMLSHLKI 391 (419)
T ss_pred ccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccCchHHHHHHHhCccccc
Confidence 99987 4444 44567789999999999994221111123567789999999998433 22223345566554
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.42 E-value=2.2e-08 Score=84.83 Aligned_cols=111 Identities=28% Similarity=0.350 Sum_probs=77.6
Q ss_pred ccEEEeecCCCCcchHh---hcCCCCCcEEEeecCCCCCcchhhcC-CCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 210 LEQVDLSSRGLRFLPEA---FGRIAGLRLMSLSNNHLEVIPDSIAG-LVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~---~~~l~~L~~L~Ls~n~l~~l~~~l~~-l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
+-.++|++|.+..+++. +....+|+..+|++|.+..+|..|.. ++.++.|++++|.|+.+|..+..++.|+.|+++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccc
Confidence 34577777777666553 44455666677777777777766643 347777777777777777777777777777777
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhh
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIG 320 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~ 320 (516)
.|.+...|..+..+.+|..|+..+|.+..++...+
T Consensus 109 ~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~ 143 (177)
T KOG4579|consen 109 FNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF 143 (177)
T ss_pred cCccccchHHHHHHHhHHHhcCCCCccccCcHHHh
Confidence 77777777777777777777777777766666544
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.37 E-value=2e-07 Score=79.02 Aligned_cols=108 Identities=24% Similarity=0.369 Sum_probs=88.8
Q ss_pred hCCCccEEEeecCCCCcchHhhc-CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182 206 AGKSLEQVDLSSRGLRFLPEAFG-RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV 284 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~~~~~-~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L 284 (516)
.+..|+.++|++|.++.+|+.|. +++.++.|++++|.|..+|..+..++.|+.|+++.|.+...|..+..+.+|-.|+.
T Consensus 51 ~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 51 KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred CCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcC
Confidence 45789999999999999998764 45689999999999999999999999999999999999999998888999999999
Q ss_pred eCCCCCCCCcccccCCCCcEEeCCCCCCC
Q 010182 285 SGNKLSALPDSISHCRSLVELDASFNRLA 313 (516)
Q Consensus 285 s~n~l~~l~~~l~~l~~L~~L~L~~n~l~ 313 (516)
.+|.+..++..+..-...-...+.++.+.
T Consensus 131 ~~na~~eid~dl~~s~~~al~~lgnepl~ 159 (177)
T KOG4579|consen 131 PENARAEIDVDLFYSSLPALIKLGNEPLG 159 (177)
T ss_pred CCCccccCcHHHhccccHHHHHhcCCccc
Confidence 99998888765433233333334444443
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.33 E-value=1.6e-06 Score=88.21 Aligned_cols=142 Identities=21% Similarity=0.356 Sum_probs=88.8
Q ss_pred cccHHHHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecC-CCCCcchhhcCCCCccEEEeeCC-CCCCcc
Q 010182 193 EVNEEVMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNN-HLEVIPDSIAGLVNLEELNLASN-LLETLP 270 (516)
Q Consensus 193 ~~~~~~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~ 270 (516)
+....+...+..+ ..++.|++++|.++.+|. + -.+|+.|.+++| .++.+|..+ .++|++|++++| .+..+|
T Consensus 39 e~r~~a~~r~~~~--~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 39 EIRSEITPQIEEA--RASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP 111 (426)
T ss_pred HHHHHHHHHHHHh--cCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc
Confidence 3444555555554 778899999999888872 2 246999999875 566677655 358899999888 676666
Q ss_pred hhhcCCCCCcEEEeeCCCCC---CCCcccccCCCCcEEeCCCCC-C--CcCChhhhhcCCCCcEEecCCCCCccccchhc
Q 010182 271 DSIGLLDNLKILDVSGNKLS---ALPDSISHCRSLVELDASFNR-L--AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG 344 (516)
Q Consensus 271 ~~l~~l~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~L~~n~-l--~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~ 344 (516)
. +|+.|+++++... .+|. +|+.|.+.+++ . ..++. . -..+|++|++++|....+|..+.
T Consensus 112 ~------sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~--LPsSLk~L~Is~c~~i~LP~~LP 176 (426)
T PRK15386 112 E------SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN-L--ISPSLKTLSLTGCSNIILPEKLP 176 (426)
T ss_pred c------ccceEEeCCCCCcccccCcc------hHhheecccccccccccccc-c--cCCcccEEEecCCCcccCccccc
Confidence 4 4677777766543 3443 35566664332 1 11111 0 12567788887776655554433
Q ss_pred CCCCCcEEEccCCC
Q 010182 345 EMASLRHLDAHFNE 358 (516)
Q Consensus 345 ~l~~L~~L~Ls~n~ 358 (516)
.+|+.|.++.+.
T Consensus 177 --~SLk~L~ls~n~ 188 (426)
T PRK15386 177 --ESLQSITLHIEQ 188 (426)
T ss_pred --ccCcEEEecccc
Confidence 467777776653
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.33 E-value=7.2e-07 Score=80.63 Aligned_cols=122 Identities=25% Similarity=0.335 Sum_probs=77.7
Q ss_pred cEEEeeCCCCCCcchhhc-CCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCC
Q 010182 257 EELNLASNLLETLPDSIG-LLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335 (516)
Q Consensus 257 ~~L~Ls~n~l~~l~~~l~-~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 335 (516)
+.++|++.++..+.. ++ .+.+...+||++|.+..+ ..+..+..|.+|.+++|.|+.+...+..-+++|..|.+.+|+
T Consensus 22 ~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 22 RELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred cccccccccccchhh-ccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc
Confidence 445555554443322 11 234556666677766655 445566677777777777777776666667777777777777
Q ss_pred Ccccc--chhcCCCCCcEEEccCCCCCCcc----hhhCCCCCCcEEEcccC
Q 010182 336 IRFLP--TSIGEMASLRHLDAHFNELHGLP----ATIGKLTNLEILNVSSN 380 (516)
Q Consensus 336 l~~l~--~~l~~l~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~~n 380 (516)
|..+. ..+..|+.|++|.+-+|.++.-. -.+..+++|++||...-
T Consensus 100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 66542 34566778888888888777632 25677788888887754
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.18 E-value=8.8e-06 Score=82.80 Aligned_cols=135 Identities=19% Similarity=0.183 Sum_probs=93.8
Q ss_pred hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCC-CCCCcchhhcCCCCCcEEEeeCC-CCCCCCcccccCCCCcE
Q 010182 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN-LLETLPDSIGLLDNLKILDVSGN-KLSALPDSISHCRSLVE 304 (516)
Q Consensus 227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~ 304 (516)
+..+.+++.|++++|.++.+|. -..+|+.|.+++| .++.+|..+ ..+|++|++++| .+..+|. +|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccce
Confidence 4456889999999999998872 2347999999885 677777654 368999999998 7777765 4677
Q ss_pred EeCCCCCCCcCChhhhhcCCCCcEEecCCCC-C--ccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccC
Q 010182 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNK-I--RFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSN 380 (516)
Q Consensus 305 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l--~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n 380 (516)
|++.++.+..++.. -++|+.|.+.++. . ..++. .-..+|++|++++|....+|..+. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~L~~L----PssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDSIKNV----PNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcccccC----cchHhheecccccccccccccc--ccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 77777664433211 2356777775432 1 11121 112589999999998776665544 68999999876
No 56
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.14 E-value=2.9e-06 Score=76.77 Aligned_cols=102 Identities=23% Similarity=0.342 Sum_probs=57.7
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcC-CCCCcEEEeeCCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGL-LDNLKILDVSGNKL 289 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~-l~~L~~L~Ls~n~l 289 (516)
+.++|.+.++..+...-....+...++|++|.+..+ ..|..++.|.+|.|.+|.|+.|.+.+.. +++|+.|.|.+|+|
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 345555555443322111123455667777766655 3456666677777777777766554433 45677777777766
Q ss_pred CCCC--cccccCCCCcEEeCCCCCCC
Q 010182 290 SALP--DSISHCRSLVELDASFNRLA 313 (516)
Q Consensus 290 ~~l~--~~l~~l~~L~~L~L~~n~l~ 313 (516)
..+. ..+..|++|++|.+-+|.++
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~ 126 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVE 126 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchh
Confidence 6442 33455666666666666554
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.06 E-value=3.7e-06 Score=57.79 Aligned_cols=39 Identities=51% Similarity=0.680 Sum_probs=26.5
Q ss_pred CCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182 395 TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 395 ~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
++|++|++++|+|+++|..+..+++|+.|++++|+|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 357777777777777776677777777777777777654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=5.4e-06 Score=56.98 Aligned_cols=38 Identities=37% Similarity=0.605 Sum_probs=16.2
Q ss_pred CCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc
Q 010182 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL 269 (516)
Q Consensus 232 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l 269 (516)
+|++|++++|+|+.+|..++++++|++|++++|+|+.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444443344444444444444444433
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=1.3e-05 Score=88.03 Aligned_cols=148 Identities=23% Similarity=0.253 Sum_probs=99.4
Q ss_pred CCCCcEEEeeCCCCC--CCCccccc-CCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCccccchhcCCCCCcE
Q 010182 276 LDNLKILDVSGNKLS--ALPDSISH-CRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRH 351 (516)
Q Consensus 276 l~~L~~L~Ls~n~l~--~l~~~l~~-l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~ 351 (516)
-.+|++|+++|...- .-+..++. +++|+.|.+++-.+..-. .....++++|..||+++++++.+ .+++++++|+.
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 368999999886432 22333443 889999988876654221 23455788999999999999888 78888899998
Q ss_pred EEccCCCCCCc--chhhCCCCCCcEEEcccCCCCCCC-cc----hhhcCCCCccEEeccCCCCCCc--hhhhcCCCcccE
Q 010182 352 LDAHFNELHGL--PATIGKLTNLEILNVSSNFTDMKE-LP----ETFGELTNLKELDLSNNQIHAL--PNTFGRLDKLIK 422 (516)
Q Consensus 352 L~Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~~~~~~-l~----~~l~~l~~L~~L~L~~n~i~~l--p~~l~~l~~L~~ 422 (516)
|.+.+=.+..- -..+.++++|+.||+|........ +. +.-..+++|+.||.+++.+..- -..+..-++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 88887666652 235667889999999887432222 11 1223478888888888877732 244455566665
Q ss_pred Ee
Q 010182 423 LN 424 (516)
Q Consensus 423 L~ 424 (516)
+.
T Consensus 280 i~ 281 (699)
T KOG3665|consen 280 IA 281 (699)
T ss_pred hh
Confidence 55
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.85 E-value=1.2e-05 Score=88.18 Aligned_cols=135 Identities=21% Similarity=0.271 Sum_probs=90.2
Q ss_pred hHHhhCCCccEEEeecCCCC--cchHh-hcCCCCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcchhhcCC
Q 010182 202 LQEAAGKSLEQVDLSSRGLR--FLPEA-FGRIAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPDSIGLL 276 (516)
Q Consensus 202 l~~~~~~~L~~L~L~~~~l~--~l~~~-~~~l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l 276 (516)
+.+....+|++||++|...- .-+.. -..+|+|+.|.+++-.+. .+..-..++|+|..||+|+++++.+ .+++.+
T Consensus 116 Ln~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 116 LNEESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HhHHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 34445578888999886532 22333 345688999988887665 3334556788888999999888888 668888
Q ss_pred CCCcEEEeeCCCCCCCC--cccccCCCCcEEeCCCCCCCcCCh------hhhhcCCCCcEEecCCCCCc
Q 010182 277 DNLKILDVSGNKLSALP--DSISHCRSLVELDASFNRLAYLPT------NIGHELVNLQKLLVPLNKIR 337 (516)
Q Consensus 277 ~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~------~~~~~l~~L~~L~L~~n~l~ 337 (516)
++|++|.+.+=.+..-. ..+.++++|+.||+|.......+. ..+..+++|+.||.+++.+.
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 88888888776655321 356778888888888776543331 11234666666666666554
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.79 E-value=8.5e-07 Score=88.21 Aligned_cols=226 Identities=17% Similarity=0.066 Sum_probs=124.7
Q ss_pred HhhCCCccEEEeecCCC---CcchHhhcCCCCCcEEEeecCC-CCCc-chhh-cCCCCccEEEeeCC-CCCCc--chhhc
Q 010182 204 EAAGKSLEQVDLSSRGL---RFLPEAFGRIAGLRLMSLSNNH-LEVI-PDSI-AGLVNLEELNLASN-LLETL--PDSIG 274 (516)
Q Consensus 204 ~~~~~~L~~L~L~~~~l---~~l~~~~~~l~~L~~L~Ls~n~-l~~l-~~~l-~~l~~L~~L~Ls~n-~l~~l--~~~l~ 274 (516)
...+..++.|.+.|+.= +.+-.....+++++.|.+.++. ++.- ...+ ..+++|++|++..| .|+.. .....
T Consensus 134 ~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~ 213 (483)
T KOG4341|consen 134 SRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE 213 (483)
T ss_pred hhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence 33456788888887652 2444455678888888888874 3321 2222 45778999998885 55532 12334
Q ss_pred CCCCCcEEEeeCCC-CC--CCCcccccCCCCcEEeCCCCCCCcCCh--hhhhcCCCCcEEecCCC-CCccc--cchhcCC
Q 010182 275 LLDNLKILDVSGNK-LS--ALPDSISHCRSLVELDASFNRLAYLPT--NIGHELVNLQKLLVPLN-KIRFL--PTSIGEM 346 (516)
Q Consensus 275 ~l~~L~~L~Ls~n~-l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~--~~~~~l~~L~~L~L~~n-~l~~l--~~~l~~l 346 (516)
.+++|++|++++|. |+ .+-.-..++..++.+.+.+|.=..+.. .+...+.-+..+++..+ .++.. -..-..+
T Consensus 214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 67889999998883 33 222234456667777666653111110 11112334455554444 23321 1112345
Q ss_pred CCCcEEEccCCC-CCC--cchhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCCCCC---CchhhhcCCCc
Q 010182 347 ASLRHLDAHFNE-LHG--LPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQIH---ALPNTFGRLDK 419 (516)
Q Consensus 347 ~~L~~L~Ls~n~-l~~--l~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n~i~---~lp~~l~~l~~ 419 (516)
..|+.|+.+++. +++ +-..-.++.+|+.|-+.++. ++...+...-.+.+.|+.+++.+|... ++...-.+++.
T Consensus 294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 567777776653 333 22223456677777777763 233333222345667777777777443 23333346677
Q ss_pred ccEEecccCC
Q 010182 420 LIKLNLEENP 429 (516)
Q Consensus 420 L~~L~L~~N~ 429 (516)
|++|.|+++.
T Consensus 374 lr~lslshce 383 (483)
T KOG4341|consen 374 LRVLSLSHCE 383 (483)
T ss_pred hccCChhhhh
Confidence 7777777664
No 62
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.58 E-value=6.2e-07 Score=94.25 Aligned_cols=253 Identities=24% Similarity=0.220 Sum_probs=125.0
Q ss_pred CCccEEEeecCCCCc-----chHhhcCC-CCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC-----Ccch
Q 010182 208 KSLEQVDLSSRGLRF-----LPEAFGRI-AGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE-----TLPD 271 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~-----l~~~~~~l-~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~-----~l~~ 271 (516)
..+..|++++|.+.. +...+... ..+++|.+..|.++ .+...+....+++.++++.|.+. .++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 556666666666651 11222222 34555666666555 23445555666666666666553 1122
Q ss_pred hhc----CCCCCcEEEeeCCCCCC-----CCcccccCCC-CcEEeCCCCCCCcC-----ChhhhhcC-CCCcEEecCCCC
Q 010182 272 SIG----LLDNLKILDVSGNKLSA-----LPDSISHCRS-LVELDASFNRLAYL-----PTNIGHEL-VNLQKLLVPLNK 335 (516)
Q Consensus 272 ~l~----~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~-L~~L~L~~n~l~~l-----~~~~~~~l-~~L~~L~L~~n~ 335 (516)
.+. ...++++|++++|.++. +...+...++ +..|++..|.+... .... ... ..++.+++..|.
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l-~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCL-SVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHh-cccchhhhhhhhhcCC
Confidence 222 35566666666666551 1122333344 55566666665532 1111 112 455666666666
Q ss_pred Cc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc------------------
Q 010182 336 IR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL------------------ 387 (516)
Q Consensus 336 l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l------------------ 387 (516)
|+ .+...+..+..+++|.+++|.+.. +-..+.....+..+.+.++.......
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTGKGTRGGTSVLAEADAQRQLLSELG 353 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccCccchhHHHHHHHHHHHhhhhHHHH
Confidence 65 334445555666667776666665 11222233333333333321110000
Q ss_pred --------------chhhcCC-CCccEEeccCCCCC-----CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHH
Q 010182 388 --------------PETFGEL-TNLKELDLSNNQIH-----ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKT 447 (516)
Q Consensus 388 --------------~~~l~~l-~~L~~L~L~~n~i~-----~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~ 447 (516)
.....+. ..+..+++..+.+. .++..+...+.+..++++.|...+.....+......
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~~~~~~~~~l~~~~~~--- 430 (478)
T KOG4308|consen 354 ISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNSLHDEGAEVLTEQLSR--- 430 (478)
T ss_pred hhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCccchhhHHHHHHhhhh---
Confidence 0011111 23555666665544 234455677788888888887766655444432221
Q ss_pred HHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182 448 FMAKRWLDILLEEERRSMLKLEGNNNEGE 476 (516)
Q Consensus 448 ~~~~~~l~~~~~~~~l~~l~L~~N~i~~~ 476 (516)
.. .+..+.++.|.++..
T Consensus 431 -----------~~-~~~~~~l~~~~~~~~ 447 (478)
T KOG4308|consen 431 -----------NG-SLKALRLSRNPITAL 447 (478)
T ss_pred -----------cc-cchhhhhccChhhhc
Confidence 12 445566777766644
No 63
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.49 E-value=1e-06 Score=92.54 Aligned_cols=90 Identities=30% Similarity=0.339 Sum_probs=46.3
Q ss_pred hcCCCC-CcEEEccCCCCCC-----cchhhCCC-CCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCc--
Q 010182 343 IGEMAS-LRHLDAHFNELHG-----LPATIGKL-TNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHAL-- 410 (516)
Q Consensus 343 l~~l~~-L~~L~Ls~n~l~~-----l~~~l~~l-~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~l-- 410 (516)
+...+. +..|++..|.+.+ +...+... ..+++++++.|.+...+ +...+..+..+++|.+++|.++.-
T Consensus 228 l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~ 307 (478)
T KOG4308|consen 228 LASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGV 307 (478)
T ss_pred HhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHH
Confidence 334443 5556666666654 22334444 45666666666554322 233444555666666666666632
Q ss_pred ---hhhhcCCCcccEEecccCCCCC
Q 010182 411 ---PNTFGRLDKLIKLNLEENPMVI 432 (516)
Q Consensus 411 ---p~~l~~l~~L~~L~L~~N~l~~ 432 (516)
-..+.....+..+-+.++....
T Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~~~~ 332 (478)
T KOG4308|consen 308 ELLLEALERKTPLLHLVLGGTGKGT 332 (478)
T ss_pred HHHHHHhhhcccchhhhccccCccc
Confidence 1333444555555555444443
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.30 E-value=8.3e-05 Score=70.22 Aligned_cols=105 Identities=26% Similarity=0.253 Sum_probs=66.1
Q ss_pred cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCC--CCC-CcchhhcCCCCCcEEEeeCCCCCCC--CcccccCCCC
Q 010182 228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASN--LLE-TLPDSIGLLDNLKILDVSGNKLSAL--PDSISHCRSL 302 (516)
Q Consensus 228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n--~l~-~l~~~l~~l~~L~~L~Ls~n~l~~l--~~~l~~l~~L 302 (516)
..+..|+.|++.+..++.+ ..+..+++|++|.++.| .+. .++.....+++|++|++++|+|..+ -..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445566666666666655 34566778888888888 433 3433444568888888888887743 1334556777
Q ss_pred cEEeCCCCCCCcCC---hhhhhcCCCCcEEecCC
Q 010182 303 VELDASFNRLAYLP---TNIGHELVNLQKLLVPL 333 (516)
Q Consensus 303 ~~L~L~~n~l~~l~---~~~~~~l~~L~~L~L~~ 333 (516)
..|++.+|..+.+. ..+|.-+++|++|+-..
T Consensus 119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 78888887655432 33455566666665443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.26 E-value=0.00015 Score=68.49 Aligned_cols=103 Identities=31% Similarity=0.320 Sum_probs=59.7
Q ss_pred CCCCcEEecCCCCCccccchhcCCCCCcEEEccCC--CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccE
Q 010182 323 LVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN--ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKE 399 (516)
Q Consensus 323 l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n--~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~ 399 (516)
...|+.|++.+..++++ ..+-.+++|++|.++.| ++.. ++.....+++|++|++++|.+.+..--..+..+.+|..
T Consensus 42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 33444444444444433 23444567777777777 4333 33344455788888888886653222233456667778
Q ss_pred EeccCCCCCCch----hhhcCCCcccEEecc
Q 010182 400 LDLSNNQIHALP----NTFGRLDKLIKLNLE 426 (516)
Q Consensus 400 L~L~~n~i~~lp----~~l~~l~~L~~L~L~ 426 (516)
|++.+|..+.+- ..+.-+++|++|+-.
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 888888776542 455666777776543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=3.7e-05 Score=72.97 Aligned_cols=97 Identities=23% Similarity=0.295 Sum_probs=74.3
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch--hhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD--SIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls 285 (516)
.+++.|++.||++..+. ...+|+.|++|.|+-|.|+.+ ..+..|++|++|+|+.|.|.++.+ .+.++++|+.|.|.
T Consensus 19 ~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred HHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45778999999988763 356799999999999999988 457889999999999999997754 56788999999988
Q ss_pred CCCCC--CCC----cccccCCCCcEEe
Q 010182 286 GNKLS--ALP----DSISHCRSLVELD 306 (516)
Q Consensus 286 ~n~l~--~l~----~~l~~l~~L~~L~ 306 (516)
.|.-. .-+ ..+.-+++|+.||
T Consensus 97 ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 97 ENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cCCcccccchhHHHHHHHHcccchhcc
Confidence 88533 111 2345567777665
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=3.1e-05 Score=73.44 Aligned_cols=81 Identities=27% Similarity=0.284 Sum_probs=52.8
Q ss_pred CCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhh-hhcCCCCcEEec
Q 010182 253 LVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNI-GHELVNLQKLLV 331 (516)
Q Consensus 253 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~-~~~l~~L~~L~L 331 (516)
+.+.+.|++.+|.|+.| ..+..++.|++|.|+-|+|+.+ ..+..|++|++|+|..|.|..+.... ..++++|+.|.|
T Consensus 18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL 95 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL 95 (388)
T ss_pred HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence 44566777777777766 3355677777777777777777 45667777777777777776654432 345566666666
Q ss_pred CCCC
Q 010182 332 PLNK 335 (516)
Q Consensus 332 ~~n~ 335 (516)
..|.
T Consensus 96 ~ENP 99 (388)
T KOG2123|consen 96 DENP 99 (388)
T ss_pred ccCC
Confidence 5554
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.05 E-value=0.0016 Score=55.73 Aligned_cols=102 Identities=20% Similarity=0.400 Sum_probs=40.6
Q ss_pred hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCC
Q 010182 226 AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSL 302 (516)
Q Consensus 226 ~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L 302 (516)
+|..+.+|+.+.+.. .+..+ ..+|.++.+|+.+.+..+ +..++. .|..+.+|+.+.+.. .+..++ ..+..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 355555666666553 34444 234555555666666553 444443 444444555555543 333232 233345555
Q ss_pred cEEeCCCCCCCcCChhhhhcCCCCcEEecC
Q 010182 303 VELDASFNRLAYLPTNIGHELVNLQKLLVP 332 (516)
Q Consensus 303 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 332 (516)
+.+++..+ +..++...+.+. +|+.+.+.
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 55555443 444444444433 44444444
No 69
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.88 E-value=0.0034 Score=53.75 Aligned_cols=82 Identities=20% Similarity=0.352 Sum_probs=31.6
Q ss_pred hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCC
Q 010182 249 SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNL 326 (516)
Q Consensus 249 ~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 326 (516)
.|.++.+|+.+.+.. .+..++. .|..+.+|+.+.+..+ +..++ ..+.++.+|+.+.+.. .+..++...+..+.+|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 445555566665553 3444433 3444445555555443 44332 2334444555555543 3444444444444455
Q ss_pred cEEecCC
Q 010182 327 QKLLVPL 333 (516)
Q Consensus 327 ~~L~L~~ 333 (516)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 5554443
No 70
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.65 E-value=0.00017 Score=72.26 Aligned_cols=224 Identities=18% Similarity=0.099 Sum_probs=114.4
Q ss_pred hCCCccEEEeecCC-CC--cchHhhcCCCCCcEEEeecC-CCCCc-ch-hhcCCCCccEEEeeCC-CCC--CcchhhcCC
Q 010182 206 AGKSLEQVDLSSRG-LR--FLPEAFGRIAGLRLMSLSNN-HLEVI-PD-SIAGLVNLEELNLASN-LLE--TLPDSIGLL 276 (516)
Q Consensus 206 ~~~~L~~L~L~~~~-l~--~l~~~~~~l~~L~~L~Ls~n-~l~~l-~~-~l~~l~~L~~L~Ls~n-~l~--~l~~~l~~l 276 (516)
.+++++.|.+.++. ++ .+-..-..+++|+.|++..| .++.. .. --.++++|++|++++| .|+ .+-....+.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 45778888777765 22 12222345688888888885 45522 12 2356788888888887 333 222223344
Q ss_pred CCCcEEEeeCCC---------------------------CCCC--CcccccCCCCcEEeCCCCC-CCcCC-hhhhhcCCC
Q 010182 277 DNLKILDVSGNK---------------------------LSAL--PDSISHCRSLVELDASFNR-LAYLP-TNIGHELVN 325 (516)
Q Consensus 277 ~~L~~L~Ls~n~---------------------------l~~l--~~~l~~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~ 325 (516)
..++.+.+.||. ++.. ...-..+..|+.|+.+++. ++... .....+..+
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN 321 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence 445555444442 1110 0011224455555555543 22111 122334566
Q ss_pred CcEEecCCCC-Cccc--cchhcCCCCCcEEEccCCCCCC---cchhhCCCCCCcEEEcccCCC-CCCC---cchhhcCCC
Q 010182 326 LQKLLVPLNK-IRFL--PTSIGEMASLRHLDAHFNELHG---LPATIGKLTNLEILNVSSNFT-DMKE---LPETFGELT 395 (516)
Q Consensus 326 L~~L~L~~n~-l~~l--~~~l~~l~~L~~L~Ls~n~l~~---l~~~l~~l~~L~~L~L~~n~~-~~~~---l~~~l~~l~ 395 (516)
|+.|-+..++ ++.. ..--.++..|+.+++..+.... +.+.-.+++.|+.|.++.+.. .+.+ +...-....
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 6666666664 2211 1111344566666666654332 333334666777777776631 1111 111223455
Q ss_pred CccEEeccCCCCCC--chhhhcCCCcccEEecccCC
Q 010182 396 NLKELDLSNNQIHA--LPNTFGRLDKLIKLNLEENP 429 (516)
Q Consensus 396 ~L~~L~L~~n~i~~--lp~~l~~l~~L~~L~L~~N~ 429 (516)
.|+.+.|++|..+. .-+.+..+++|+.+++-++.
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 67777777775542 22566667777776666553
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.0014 Score=69.55 Aligned_cols=105 Identities=22% Similarity=0.199 Sum_probs=49.3
Q ss_pred CCCccEEEeecCC-CCc--chHhhcCCCCCcEEEeecC--CCCCc----chhhcCCCCccEEEeeCCC-CCCcc-hhh-c
Q 010182 207 GKSLEQVDLSSRG-LRF--LPEAFGRIAGLRLMSLSNN--HLEVI----PDSIAGLVNLEELNLASNL-LETLP-DSI-G 274 (516)
Q Consensus 207 ~~~L~~L~L~~~~-l~~--l~~~~~~l~~L~~L~Ls~n--~l~~l----~~~l~~l~~L~~L~Ls~n~-l~~l~-~~l-~ 274 (516)
.+.++.+.+.++. +.. +......+++|+.|+++++ .+... ......+.+|+.|+++++. ++... ..+ .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 3555666655542 222 3334455566666666652 11111 1222344566666666665 44221 112 2
Q ss_pred CCCCCcEEEeeCCC-CC--CCCcccccCCCCcEEeCCCCC
Q 010182 275 LLDNLKILDVSGNK-LS--ALPDSISHCRSLVELDASFNR 311 (516)
Q Consensus 275 ~l~~L~~L~Ls~n~-l~--~l~~~l~~l~~L~~L~L~~n~ 311 (516)
.+++|++|.+.+|. ++ .+......+++|++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25566666655554 33 222223345556666666554
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.94 E-value=0.002 Score=68.35 Aligned_cols=185 Identities=22% Similarity=0.190 Sum_probs=92.4
Q ss_pred hcCCCCCcEEEeecC-CCCC--cchhhcCCCCccEEEeeCC--CCCCcc----hhhcCCCCCcEEEeeCCC-CCCCC-cc
Q 010182 227 FGRIAGLRLMSLSNN-HLEV--IPDSIAGLVNLEELNLASN--LLETLP----DSIGLLDNLKILDVSGNK-LSALP-DS 295 (516)
Q Consensus 227 ~~~l~~L~~L~Ls~n-~l~~--l~~~l~~l~~L~~L~Ls~n--~l~~l~----~~l~~l~~L~~L~Ls~n~-l~~l~-~~ 295 (516)
...+++|+.|.+.++ .+.. +-.....+++|+.|+++++ .+...+ .....+.+|+.|+++++. ++... ..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 334688888888877 4443 4455567788888888873 222111 123345777788887776 44221 11
Q ss_pred cc-cCCCCcEEeCCCCC-CCcCC-hhhhhcCCCCcEEecCCCCCc---cccchhcCCCCCcEEEccCCCCCCcchhhCCC
Q 010182 296 IS-HCRSLVELDASFNR-LAYLP-TNIGHELVNLQKLLVPLNKIR---FLPTSIGEMASLRHLDAHFNELHGLPATIGKL 369 (516)
Q Consensus 296 l~-~l~~L~~L~L~~n~-l~~l~-~~~~~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l 369 (516)
+. .|++|++|.+.+|. ++... ..+...+++|++|+++++... .+.....++++|+.|.+.... .+
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------~c 334 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------GC 334 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC---------CC
Confidence 22 26677777766665 43221 122334566677766665432 122223334444444332221 13
Q ss_pred CCCcEEEcccCCCC--CCCcchhhcCCCCccEEeccCCCCCCch--hhhcCCCcc
Q 010182 370 TNLEILNVSSNFTD--MKELPETFGELTNLKELDLSNNQIHALP--NTFGRLDKL 420 (516)
Q Consensus 370 ~~L~~L~L~~n~~~--~~~l~~~l~~l~~L~~L~L~~n~i~~lp--~~l~~l~~L 420 (516)
..++.+.+.+.... ..........+++++.+.+..+.++... ..+..+++|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33444444332111 0112223455666666666666644332 334444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.00 E-value=0.0082 Score=34.37 Aligned_cols=21 Identities=43% Similarity=0.797 Sum_probs=14.5
Q ss_pred CccEEeccCCCCCCchhhhcC
Q 010182 396 NLKELDLSNNQIHALPNTFGR 416 (516)
Q Consensus 396 ~L~~L~L~~n~i~~lp~~l~~ 416 (516)
+|++|+|++|+|+.+|..|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 467777777777777755544
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.57 E-value=0.012 Score=33.71 Aligned_cols=10 Identities=40% Similarity=0.458 Sum_probs=3.6
Q ss_pred EEEeeCCCCC
Q 010182 258 ELNLASNLLE 267 (516)
Q Consensus 258 ~L~Ls~n~l~ 267 (516)
+|++++|+|+
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.29 E-value=0.00092 Score=62.12 Aligned_cols=86 Identities=21% Similarity=0.164 Sum_probs=64.8
Q ss_pred hhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182 205 AAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV 284 (516)
Q Consensus 205 ~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L 284 (516)
..+...+.||++.|.+-.+...|+.++.|..|+++.|.+..+|..++....++.+++..|+.+..|.+++..++++++++
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 34567777888877777666667777777778888887777777777777777777877888877777777788888777
Q ss_pred eCCCCC
Q 010182 285 SGNKLS 290 (516)
Q Consensus 285 s~n~l~ 290 (516)
.+|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 777654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.14 E-value=0.032 Score=29.71 Aligned_cols=16 Identities=63% Similarity=1.032 Sum_probs=7.1
Q ss_pred CccEEeccCCCCCCch
Q 010182 396 NLKELDLSNNQIHALP 411 (516)
Q Consensus 396 ~L~~L~L~~n~i~~lp 411 (516)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 77
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.48 E-value=0.0014 Score=61.00 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=80.9
Q ss_pred CCcchH-hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCccccc
Q 010182 220 LRFLPE-AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISH 298 (516)
Q Consensus 220 l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~ 298 (516)
++.+|- .+..+...+.||++.|++..+...|+-+..|..|+++.|.+..+|..++.+..+..+++..|..+..|.++..
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 334442 3566788999999999988777778888889999999999999999999999999999999999999999999
Q ss_pred CCCCcEEeCCCCCCC
Q 010182 299 CRSLVELDASFNRLA 313 (516)
Q Consensus 299 l~~L~~L~L~~n~l~ 313 (516)
.+.++.+++-+|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 999999999988764
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.68 E-value=0.074 Score=28.30 Aligned_cols=11 Identities=45% Similarity=0.670 Sum_probs=3.0
Q ss_pred ccEEEeeCCCC
Q 010182 256 LEELNLASNLL 266 (516)
Q Consensus 256 L~~L~Ls~n~l 266 (516)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33333333333
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.24 E-value=0.052 Score=49.73 Aligned_cols=81 Identities=21% Similarity=0.177 Sum_probs=52.6
Q ss_pred CCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCC-CCCCch-hhhcCCCcccEE
Q 010182 348 SLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNN-QIHALP-NTFGRLDKLIKL 423 (516)
Q Consensus 348 ~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n-~i~~lp-~~l~~l~~L~~L 423 (516)
.++.+|.+++.|... -+.+..++.++.|.+.+|. +.+..+...-+-.++|+.|+|++| +||+-. ..+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456677777666552 3456677777777777762 121222111123578999999988 788664 678888899888
Q ss_pred ecccC
Q 010182 424 NLEEN 428 (516)
Q Consensus 424 ~L~~N 428 (516)
.|.+=
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 87653
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.04 E-value=0.39 Score=28.44 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=11.2
Q ss_pred CcccEEecccCCCCCCCHHHH
Q 010182 418 DKLIKLNLEENPMVIPPVEVV 438 (516)
Q Consensus 418 ~~L~~L~L~~N~l~~~~~~~~ 438 (516)
++|+.|+|++|.|..++..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555555555443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.04 E-value=0.39 Score=28.44 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=11.2
Q ss_pred CcccEEecccCCCCCCCHHHH
Q 010182 418 DKLIKLNLEENPMVIPPVEVV 438 (516)
Q Consensus 418 ~~L~~L~L~~N~l~~~~~~~~ 438 (516)
++|+.|+|++|.|..++..++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 445555555555555555443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.21 E-value=0.45 Score=28.18 Aligned_cols=21 Identities=43% Similarity=0.426 Sum_probs=11.0
Q ss_pred CCCcEEeCCCCCCCcCChhhh
Q 010182 300 RSLVELDASFNRLAYLPTNIG 320 (516)
Q Consensus 300 ~~L~~L~L~~n~l~~l~~~~~ 320 (516)
++|+.|++++|.|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.21 E-value=0.45 Score=28.18 Aligned_cols=21 Identities=43% Similarity=0.426 Sum_probs=11.0
Q ss_pred CCCcEEeCCCCCCCcCChhhh
Q 010182 300 RSLVELDASFNRLAYLPTNIG 320 (516)
Q Consensus 300 ~~L~~L~L~~n~l~~l~~~~~ 320 (516)
++|+.|++++|.|+.+|..+|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 345555555555555555443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=87.02 E-value=0.39 Score=29.20 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=18.2
Q ss_pred CcccEEecccCCCCCCCHHHHhch
Q 010182 418 DKLIKLNLEENPMVIPPVEVVKEG 441 (516)
Q Consensus 418 ~~L~~L~L~~N~l~~~~~~~~~~~ 441 (516)
++|++|+|++|.|+..+...++++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHH
Confidence 578899999999887766665544
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.59 E-value=0.27 Score=28.55 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=9.2
Q ss_pred CCcccEEecccCCCCCCC
Q 010182 417 LDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 417 l~~L~~L~L~~N~l~~~~ 434 (516)
+++|++|+|++|.|++.+
T Consensus 1 ~~~L~~L~l~~n~i~~~g 18 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEG 18 (24)
T ss_dssp -TT-SEEE-TSSBEHHHH
T ss_pred CCCCCEEEccCCcCCHHH
Confidence 356667777777665443
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.36 E-value=0.46 Score=43.72 Aligned_cols=32 Identities=31% Similarity=0.246 Sum_probs=14.6
Q ss_pred CCCcEEEccCC-CCCC-cchhhCCCCCCcEEEcc
Q 010182 347 ASLRHLDAHFN-ELHG-LPATIGKLTNLEILNVS 378 (516)
Q Consensus 347 ~~L~~L~Ls~n-~l~~-l~~~l~~l~~L~~L~L~ 378 (516)
++|+.|++++| .||+ --..+..+++|+.|.+.
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~ 184 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLY 184 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhc
Confidence 34555555544 3443 12344445555555443
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=75.11 E-value=1.8 Score=25.85 Aligned_cols=18 Identities=56% Similarity=0.896 Sum_probs=13.3
Q ss_pred CCccEEeccCCCCCCchh
Q 010182 395 TNLKELDLSNNQIHALPN 412 (516)
Q Consensus 395 ~~L~~L~L~~n~i~~lp~ 412 (516)
++|+.|++++|+++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357778888888877774
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=70.20 E-value=6.7 Score=40.81 Aligned_cols=93 Identities=20% Similarity=0.104 Sum_probs=48.6
Q ss_pred CCcEEEccCCCCCC----cchhhCCCCCCcEEEcccCCCCCCCcchh----h----cCCCCccEEeccCCCCCCch----
Q 010182 348 SLRHLDAHFNELHG----LPATIGKLTNLEILNVSSNFTDMKELPET----F----GELTNLKELDLSNNQIHALP---- 411 (516)
Q Consensus 348 ~L~~L~Ls~n~l~~----l~~~l~~l~~L~~L~L~~n~~~~~~l~~~----l----~~l~~L~~L~L~~n~i~~lp---- 411 (516)
.+++|++..|.+.+ +- .+...+..+.+++.+..-.-...+.. + ....-+..+.++.|.+..-+
T Consensus 355 R~q~l~~rdnnldgeg~~vg-k~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVG-KRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeEeecccccccccccccc-ceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 36666666665554 11 33444556666665541100000000 0 01123677777777766332
Q ss_pred hhhcCCCcccEEecccCCCCCCCHHHHhch
Q 010182 412 NTFGRLDKLIKLNLEENPMVIPPVEVVKEG 441 (516)
Q Consensus 412 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~ 441 (516)
..+..-+.+..|++++|..++.+..++.+.
T Consensus 434 n~l~stqtl~kldisgn~mgd~gap~lpka 463 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGMGDGGAPPLPKA 463 (553)
T ss_pred HhhccCcccccccccCCCcccCCCCcCccc
Confidence 344556777888888887776665554443
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=69.92 E-value=3.5 Score=24.60 Aligned_cols=16 Identities=63% Similarity=0.895 Sum_probs=9.2
Q ss_pred CCccEEeccCCCCCCc
Q 010182 395 TNLKELDLSNNQIHAL 410 (516)
Q Consensus 395 ~~L~~L~L~~n~i~~l 410 (516)
.+|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666666543
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=66.81 E-value=3.2 Score=43.90 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=31.5
Q ss_pred CCcEEEccCCCCCC---cchhhCCCCCCcEEEcccCCCCCCCcchhhcC--CCCccEEeccCCCCC
Q 010182 348 SLRHLDAHFNELHG---LPATIGKLTNLEILNVSSNFTDMKELPETFGE--LTNLKELDLSNNQIH 408 (516)
Q Consensus 348 ~L~~L~Ls~n~l~~---l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~--l~~L~~L~L~~n~i~ 408 (516)
.+..+.|++|++.. +...-...++|+.|+|++|....... .++.. ...|++|-+.||.+.
T Consensus 219 ~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 219 EILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred ceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence 34445555554444 22233455677777777773222221 12222 235778888888776
No 91
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=64.00 E-value=4.3 Score=29.22 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=19.4
Q ss_pred CCCchhhhhcCCCCCChHHHHHHHHH
Q 010182 44 SQKNPVIVDQMPHLSDPKLVSAMRRA 69 (516)
Q Consensus 44 ~~~~~~~~~~f~h~~~qe~~aam~~~ 69 (516)
+..-.+|+++|+|++..++-||+-|+
T Consensus 31 G~s~eeI~~~yp~Lt~~~i~aAl~ya 56 (56)
T PF04255_consen 31 GESPEEIAEDYPSLTLEDIRAALAYA 56 (56)
T ss_dssp T--HHHHHHHSTT--HHHHHHHHHHH
T ss_pred CCCHHHHHHHCCCCCHHHHHHHHHhC
Confidence 44458899999999999999999774
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=51.60 E-value=6.3 Score=41.78 Aligned_cols=62 Identities=29% Similarity=0.281 Sum_probs=40.5
Q ss_pred cCCCCccEEEeeCCCCCCcch---hhcCCCCCcEEEeeCC--CCCCCCcccc--cCCCCcEEeCCCCCCC
Q 010182 251 AGLVNLEELNLASNLLETLPD---SIGLLDNLKILDVSGN--KLSALPDSIS--HCRSLVELDASFNRLA 313 (516)
Q Consensus 251 ~~l~~L~~L~Ls~n~l~~l~~---~l~~l~~L~~L~Ls~n--~l~~l~~~l~--~l~~L~~L~L~~n~l~ 313 (516)
.+.+.+..++|++|++..+.. .-...++|+.|+|++| .+... ..+. +...|++|.+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCccc
Confidence 456678888899998776532 2234688889999988 44322 1122 2345788888888865
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=48.61 E-value=10 Score=22.23 Aligned_cols=11 Identities=27% Similarity=0.326 Sum_probs=5.7
Q ss_pred CcccEEecccC
Q 010182 418 DKLIKLNLEEN 428 (516)
Q Consensus 418 ~~L~~L~L~~N 428 (516)
++|+.|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 44555555555
No 94
>COG2442 Uncharacterized conserved protein [Function unknown]
Probab=44.35 E-value=21 Score=27.72 Aligned_cols=30 Identities=20% Similarity=0.271 Sum_probs=26.3
Q ss_pred cCCCchhhhhcCCCCCChHHHHHHHHHHHH
Q 010182 43 QSQKNPVIVDQMPHLSDPKLVSAMRRAIHD 72 (516)
Q Consensus 43 ~~~~~~~~~~~f~h~~~qe~~aam~~~~~~ 72 (516)
.+....+|+++|+|++.-.+.||+-|+.+.
T Consensus 42 ~G~s~eeil~dyp~Lt~~dI~aal~ya~~~ 71 (79)
T COG2442 42 AGESIEEILADYPDLTLEDIRAALRYAADR 71 (79)
T ss_pred CCCCHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 455668999999999999999999998874
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=37.68 E-value=22 Score=45.14 Aligned_cols=33 Identities=30% Similarity=0.486 Sum_probs=29.0
Q ss_pred eccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182 401 DLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 401 ~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
||++|+|+.+| ..|..+++|+.|+|++|++...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 58899999997 7888899999999999998754
No 96
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=28.39 E-value=37 Score=32.99 Aligned_cols=80 Identities=15% Similarity=0.109 Sum_probs=53.8
Q ss_pred hhhhhcCCCCCCh-HHHHHHHHHHHHHHHHHHHHhhcCCC------CChhhHHHHHHHHHHhhHHHHhhhhhhhhcccCc
Q 010182 48 PVIVDQMPHLSDP-KLVSAMRRAIHDVYQTRSVLQTLGPR------PDHETIDKTKARIVEIDSELAKSLEGIVHSIRET 120 (516)
Q Consensus 48 ~~~~~~f~h~~~q-e~~aam~~~~~~v~~~~~~l~~~~~~------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 120 (516)
.+|++..-++..- .++|++++.-..+.+|+.+++.+... ....+..+....|+.+..+.++.|..++.++...
T Consensus 186 ~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~ 265 (287)
T PF00931_consen 186 KEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRRCFLYLSIFPEGV 265 (287)
T ss_dssp HHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHHHHhhCcCCCCCc
Confidence 4566666543332 34555554444556777777655432 2467888899999999999999999999998887
Q ss_pred cchhHHH
Q 010182 121 DVDQFEW 127 (516)
Q Consensus 121 ~~~~el~ 127 (516)
.++.+.+
T Consensus 266 ~i~~~~l 272 (287)
T PF00931_consen 266 PIPRERL 272 (287)
T ss_dssp -EEHHHH
T ss_pred eECHHHH
Confidence 7775544
No 97
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.67 E-value=1e+02 Score=32.41 Aligned_cols=199 Identities=19% Similarity=0.082 Sum_probs=96.1
Q ss_pred CccEEEeecCCCC--cc--hHhhcCCCCCcEEEeecCCCC-----Ccch----hhcCCCCccEEEeeCCCCC--Ccchhh
Q 010182 209 SLEQVDLSSRGLR--FL--PEAFGRIAGLRLMSLSNNHLE-----VIPD----SIAGLVNLEELNLASNLLE--TLPDSI 273 (516)
Q Consensus 209 ~L~~L~L~~~~l~--~l--~~~~~~l~~L~~L~Ls~n~l~-----~l~~----~l~~l~~L~~L~Ls~n~l~--~l~~~l 273 (516)
.++.++.++..+. .+ +-.++.-++|...+++.|... +++. .++.-+++ +|++..+... .++..+
T Consensus 242 vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~L 320 (553)
T KOG4242|consen 242 VLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSML 320 (553)
T ss_pred hhhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhh
Confidence 3455565555543 11 112344567777888777543 3333 23444567 7787777544 222111
Q ss_pred ---cCC--CCCcEEEeeCCCCC--CCCcccccCCCCcEEeCCCCCCCcCChhhh--hcCCCCcEEecCCCCCcc--cc--
Q 010182 274 ---GLL--DNLKILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIG--HELVNLQKLLVPLNKIRF--LP-- 340 (516)
Q Consensus 274 ---~~l--~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~--~~l~~L~~L~L~~n~l~~--l~-- 340 (516)
... +.=-.+++..|... +....-.+-..+++|....|.+..-...++ ....+++.+.++...-.. .+
T Consensus 321 Lgla~ne~t~g~rldl~~cp~~~a~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~ 400 (553)
T KOG4242|consen 321 LGLAENEATLGARLDLRRCPLERAEVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSST 400 (553)
T ss_pred cccccccccccccCChhhccccccchhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceeccccc
Confidence 000 11123455555443 111121222347777777776653322222 224456666665443210 00
Q ss_pred ----chh--cCCCCCcEEEccCCCCCCc----chhhCCCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCC
Q 010182 341 ----TSI--GEMASLRHLDAHFNELHGL----PATIGKLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQI 407 (516)
Q Consensus 341 ----~~l--~~l~~L~~L~Ls~n~l~~l----~~~l~~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i 407 (516)
.+. ..-..+..+.++.|.+..- ...+...+.+..|++++|.-++.. +|........++....+.|.+
T Consensus 401 ~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p 480 (553)
T KOG4242|consen 401 EAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLP 480 (553)
T ss_pred cchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCc
Confidence 011 1112366677777766652 224455667788888888544333 233333344566666666654
Q ss_pred C
Q 010182 408 H 408 (516)
Q Consensus 408 ~ 408 (516)
+
T Consensus 481 ~ 481 (553)
T KOG4242|consen 481 E 481 (553)
T ss_pred c
Confidence 4
No 98
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=21.99 E-value=1.5e+02 Score=20.05 Aligned_cols=38 Identities=13% Similarity=0.186 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHH
Q 010182 63 VSAMRRAIHDVYQTRSVLQTLGPRPDHETIDKTKARIV 100 (516)
Q Consensus 63 ~aam~~~~~~v~~~~~~l~~~~~~p~~~~~~~~~~~~~ 100 (516)
+|..|.-+.|..+.+.+|+.+-...+......|+.++.
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 57777777788899999998887777777777776654
Done!