Query 010182
Match_columns 516
No_of_seqs 588 out of 4184
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:40:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010182.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010182hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 100.0 5.8E-28 2E-32 244.3 26.4 264 207-502 65-328 (347)
2 2id5_A Lingo-1, leucine rich r 100.0 8.5E-29 2.9E-33 261.6 19.7 292 207-499 31-334 (477)
3 3v47_A TOLL-like receptor 5B a 100.0 1.5E-28 5.2E-33 257.7 21.2 275 208-502 30-412 (455)
4 4eco_A Uncharacterized protein 100.0 9.8E-30 3.3E-34 278.3 11.7 229 207-438 205-477 (636)
5 3rgz_A Protein brassinosteroid 100.0 1E-28 3.4E-33 276.1 19.7 276 209-504 369-723 (768)
6 1xku_A Decorin; proteoglycan, 100.0 2.2E-28 7.6E-33 245.9 19.1 264 209-499 32-307 (330)
7 4fmz_A Internalin; leucine ric 100.0 2.8E-27 9.7E-32 239.2 27.3 261 206-498 86-346 (347)
8 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-28 7.5E-33 246.2 17.9 262 209-498 34-307 (332)
9 3o6n_A APL1; leucine-rich repe 100.0 2.3E-27 7.9E-32 244.0 25.7 263 208-500 69-354 (390)
10 1xku_A Decorin; proteoglycan, 100.0 1.4E-27 4.8E-32 240.1 23.3 272 206-496 50-330 (330)
11 2id5_A Lingo-1, leucine rich r 100.0 4.7E-28 1.6E-32 255.9 20.6 275 207-502 55-360 (477)
12 4fcg_A Uncharacterized protein 100.0 4.1E-27 1.4E-31 236.7 25.5 234 200-435 73-318 (328)
13 4ecn_A Leucine-rich repeat pro 100.0 1.8E-27 6.2E-32 266.4 22.4 267 207-497 490-818 (876)
14 3oja_B Anopheles plasmodium-re 100.0 5.4E-27 1.9E-31 254.8 25.6 263 208-500 75-360 (597)
15 2ft3_A Biglycan; proteoglycan, 100.0 2E-27 6.7E-32 239.3 20.2 272 206-496 52-331 (332)
16 3rgz_A Protein brassinosteroid 100.0 1.8E-28 6E-33 274.1 13.5 224 208-432 294-552 (768)
17 4eco_A Uncharacterized protein 100.0 4.7E-28 1.6E-32 265.0 16.0 286 208-501 273-603 (636)
18 4ecn_A Leucine-rich repeat pro 100.0 2.8E-27 9.7E-32 264.8 22.5 270 208-502 548-844 (876)
19 1o6v_A Internalin A; bacterial 99.9 2.6E-26 8.9E-31 241.9 27.7 281 207-503 67-371 (466)
20 3t6q_A CD180 antigen; protein- 99.9 2E-27 6.8E-32 258.4 18.3 273 208-500 278-562 (606)
21 3t6q_A CD180 antigen; protein- 99.9 3.1E-27 1.1E-31 256.8 19.8 296 206-503 31-394 (606)
22 1o6v_A Internalin A; bacterial 99.9 4.3E-26 1.5E-30 240.3 27.9 277 208-500 90-390 (466)
23 1ogq_A PGIP-2, polygalacturona 99.9 2.3E-27 7.7E-32 237.0 15.6 245 208-476 50-307 (313)
24 3o6n_A APL1; leucine-rich repe 99.9 8.8E-27 3E-31 239.7 19.7 267 207-501 44-334 (390)
25 3vq2_A TLR4, TOLL-like recepto 99.9 4.7E-27 1.6E-31 255.5 18.0 106 208-313 56-166 (606)
26 3v47_A TOLL-like receptor 5B a 99.9 1.1E-26 3.7E-31 243.6 20.0 271 210-502 12-388 (455)
27 2z7x_B TOLL-like receptor 1, v 99.9 2.4E-27 8.2E-32 253.1 15.2 104 208-313 21-128 (520)
28 3bz5_A Internalin-J, INLJ; leu 99.9 3E-26 1E-30 240.7 22.0 273 208-500 42-333 (457)
29 2z66_A Variable lymphocyte rec 99.9 2.2E-27 7.7E-32 235.9 11.9 223 208-432 28-262 (306)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.4E-27 1.5E-31 253.7 14.6 289 207-502 51-490 (562)
31 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-27 1.3E-31 235.4 13.0 247 231-499 50-306 (313)
32 2z81_A CD282 antigen, TOLL-lik 99.9 3.2E-26 1.1E-30 245.9 21.0 152 344-502 331-490 (549)
33 3oja_B Anopheles plasmodium-re 99.9 2.3E-26 8E-31 249.8 20.0 267 207-501 50-340 (597)
34 2z7x_B TOLL-like receptor 1, v 99.9 3.5E-26 1.2E-30 244.0 20.1 143 211-359 3-150 (520)
35 2z66_A Variable lymphocyte rec 99.9 3.5E-26 1.2E-30 227.2 17.4 271 210-503 9-292 (306)
36 4fcg_A Uncharacterized protein 99.9 7E-26 2.4E-30 227.7 19.1 204 229-433 79-292 (328)
37 3zyj_A Leucine-rich repeat-con 99.9 6.5E-26 2.2E-30 237.1 19.3 225 207-433 63-294 (440)
38 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1.2E-25 4.2E-30 242.3 21.9 271 208-502 31-445 (562)
39 1ozn_A Reticulon 4 receptor; N 99.9 1.5E-25 5.2E-30 220.4 20.2 221 210-433 13-240 (285)
40 3zyi_A Leucine-rich repeat-con 99.9 8.1E-26 2.8E-30 237.2 19.3 225 207-433 74-305 (452)
41 1ziw_A TOLL-like receptor 3; i 99.9 2.1E-26 7E-31 253.9 14.8 289 207-496 24-364 (680)
42 2z81_A CD282 antigen, TOLL-lik 99.9 4.5E-26 1.5E-30 244.7 16.9 174 207-380 25-206 (549)
43 3g06_A SSPH2 (leucine-rich rep 99.9 3.6E-25 1.2E-29 239.9 23.9 241 208-502 61-301 (622)
44 3vq2_A TLR4, TOLL-like recepto 99.9 3.7E-26 1.3E-30 248.4 16.2 269 208-501 285-561 (606)
45 2z80_A TOLL-like receptor 2, v 99.9 4.6E-26 1.6E-30 231.2 15.7 274 209-501 32-317 (353)
46 2z63_A TOLL-like receptor 4, v 99.9 1.6E-26 5.6E-31 249.1 12.3 109 208-316 52-165 (570)
47 4g8a_A TOLL-like receptor 4; l 99.9 1.5E-25 5.3E-30 243.9 20.1 131 207-337 51-186 (635)
48 2z80_A TOLL-like receptor 2, v 99.9 5E-26 1.7E-30 231.0 14.9 231 205-435 49-318 (353)
49 3zyj_A Leucine-rich repeat-con 99.9 1.8E-25 6.2E-30 233.8 19.3 227 209-439 44-276 (440)
50 3zyi_A Leucine-rich repeat-con 99.9 2.4E-25 8.3E-30 233.6 19.5 227 209-439 55-287 (452)
51 2z63_A TOLL-like receptor 4, v 99.9 1.7E-25 5.8E-30 241.1 17.6 184 299-502 346-535 (570)
52 3j0a_A TOLL-like receptor 5; m 99.9 3E-25 1E-29 250.5 19.3 275 207-501 23-378 (844)
53 3j0a_A TOLL-like receptor 5; m 99.9 4E-25 1.4E-29 249.5 19.6 269 207-500 47-396 (844)
54 1ziw_A TOLL-like receptor 3; i 99.9 2.2E-24 7.5E-29 237.7 23.0 54 208-261 248-303 (680)
55 1jl5_A Outer protein YOPM; leu 99.9 1.9E-24 6.4E-29 226.8 21.0 157 208-380 111-267 (454)
56 3bz5_A Internalin-J, INLJ; leu 99.9 2.9E-24 9.8E-29 225.6 21.8 212 226-477 37-249 (457)
57 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-25 9.9E-30 222.0 13.2 215 207-431 33-250 (317)
58 1jl5_A Outer protein YOPM; leu 99.9 4E-24 1.4E-28 224.3 22.3 183 208-411 91-273 (454)
59 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-24 4.8E-29 213.5 17.6 247 233-503 13-266 (285)
60 1wwl_A Monocyte differentiatio 99.9 1.1E-25 3.6E-30 224.7 7.0 220 209-433 44-289 (312)
61 1wwl_A Monocyte differentiatio 99.9 1E-24 3.5E-29 217.6 12.7 219 210-433 65-311 (312)
62 3oja_A Leucine-rich immune mol 99.9 2.3E-24 7.7E-29 228.3 15.2 214 208-431 34-250 (487)
63 4g8a_A TOLL-like receptor 4; l 99.9 5.2E-24 1.8E-28 231.8 18.1 149 211-361 34-187 (635)
64 2z62_A TOLL-like receptor 4, v 99.9 1E-23 3.5E-28 206.4 17.0 220 211-434 10-240 (276)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.4E-25 4.9E-30 224.3 3.4 265 208-503 10-281 (317)
66 3g06_A SSPH2 (leucine-rich rep 99.9 5.3E-23 1.8E-27 223.0 22.3 224 207-480 80-303 (622)
67 1h6u_A Internalin H; cell adhe 99.9 3.7E-23 1.3E-27 205.9 18.5 194 208-435 41-234 (308)
68 2o6q_A Variable lymphocyte rec 99.9 3.1E-22 1.1E-26 195.3 21.7 199 232-434 17-221 (270)
69 3oja_A Leucine-rich immune mol 99.9 4.4E-24 1.5E-28 226.0 9.0 243 220-493 19-270 (487)
70 1z7x_W Ribonuclease inhibitor; 99.9 1.9E-24 6.5E-29 226.8 5.7 292 208-499 28-384 (461)
71 2z62_A TOLL-like receptor 4, v 99.9 5.5E-23 1.9E-27 201.1 14.6 222 235-479 11-242 (276)
72 1h6u_A Internalin H; cell adhe 99.9 2.8E-22 9.5E-27 199.6 19.7 166 207-380 62-227 (308)
73 1p9a_G Platelet glycoprotein I 99.9 3.3E-22 1.1E-26 197.3 19.5 201 227-433 6-210 (290)
74 1p9a_G Platelet glycoprotein I 99.9 4.6E-22 1.6E-26 196.3 19.3 197 207-408 9-208 (290)
75 1z7x_W Ribonuclease inhibitor; 99.9 4.3E-24 1.5E-28 224.1 4.3 293 208-500 3-356 (461)
76 2ca6_A RAN GTPase-activating p 99.9 4E-23 1.4E-27 212.1 11.1 229 207-435 31-320 (386)
77 2o6q_A Variable lymphocyte rec 99.9 1.5E-21 5E-26 190.5 20.8 197 208-408 16-218 (270)
78 2ca6_A RAN GTPase-activating p 99.9 1.6E-23 5.5E-28 215.0 6.1 248 215-477 16-319 (386)
79 4glp_A Monocyte differentiatio 99.9 5.7E-22 2E-26 197.4 16.4 221 208-433 64-309 (310)
80 2xwt_C Thyrotropin receptor; s 99.9 9.8E-22 3.3E-26 188.1 15.5 200 220-428 23-236 (239)
81 3rfs_A Internalin B, repeat mo 99.9 1.1E-21 3.8E-26 191.6 15.0 204 229-485 39-246 (272)
82 2xwt_C Thyrotropin receptor; s 99.9 2E-21 6.8E-26 185.9 16.3 195 206-405 29-236 (239)
83 3rfs_A Internalin B, repeat mo 99.9 3E-21 1E-25 188.5 15.9 202 208-419 41-247 (272)
84 2ast_B S-phase kinase-associat 99.9 9.6E-22 3.3E-26 197.5 12.6 249 208-482 47-314 (336)
85 3cvr_A Invasion plasmid antige 99.9 4.1E-21 1.4E-25 205.8 16.9 188 198-408 49-243 (571)
86 3goz_A Leucine-rich repeat-con 99.9 9.5E-22 3.3E-26 200.2 10.1 226 208-433 22-299 (362)
87 4glp_A Monocyte differentiatio 99.8 6E-21 2.1E-25 190.0 15.2 199 206-409 89-308 (310)
88 3cvr_A Invasion plasmid antige 99.8 1.1E-20 3.7E-25 202.5 17.8 185 231-438 59-250 (571)
89 3goz_A Leucine-rich repeat-con 99.8 7.7E-22 2.6E-26 200.9 7.8 253 212-476 2-299 (362)
90 2ast_B S-phase kinase-associat 99.8 4.4E-22 1.5E-26 200.0 4.1 250 231-503 47-311 (336)
91 3m19_A Variable lymphocyte rec 99.8 1.7E-19 5.7E-24 173.9 20.7 176 232-434 15-195 (251)
92 1h6t_A Internalin B; cell adhe 99.8 6.1E-20 2.1E-24 181.1 15.9 188 213-411 29-216 (291)
93 1h6t_A Internalin B; cell adhe 99.8 1.4E-20 4.7E-25 185.8 10.8 174 252-435 44-217 (291)
94 3m19_A Variable lymphocyte rec 99.8 1.7E-19 6E-24 173.8 17.4 173 208-382 14-191 (251)
95 1m9s_A Internalin B; cell inva 99.8 5.1E-20 1.7E-24 199.2 11.1 174 228-411 40-213 (605)
96 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 9.9E-24 181.0 14.6 215 208-427 30-255 (350)
97 4ay9_X Follicle-stimulating ho 99.8 1.2E-18 4E-23 176.5 17.1 219 211-434 12-240 (350)
98 1m9s_A Internalin B; cell inva 99.8 5.6E-19 1.9E-23 191.1 13.3 194 233-437 23-216 (605)
99 1xeu_A Internalin C; cellular 99.8 5.3E-19 1.8E-23 171.7 9.8 163 209-380 20-182 (263)
100 1xeu_A Internalin C; cellular 99.8 9.1E-19 3.1E-23 170.1 10.8 171 230-411 18-188 (263)
101 4ezg_A Putative uncharacterize 99.8 6E-18 2.1E-22 156.8 14.3 150 228-381 41-192 (197)
102 2o6s_A Variable lymphocyte rec 99.8 8E-18 2.7E-22 157.2 15.3 145 211-357 10-158 (208)
103 2o6s_A Variable lymphocyte rec 99.8 5.7E-18 2E-22 158.2 13.9 176 234-419 10-190 (208)
104 3ogk_B Coronatine-insensitive 99.8 4.4E-19 1.5E-23 191.9 6.4 41 460-500 487-528 (592)
105 3ogk_B Coronatine-insensitive 99.7 3.4E-19 1.2E-23 192.7 5.1 118 346-481 402-533 (592)
106 4ezg_A Putative uncharacterize 99.7 2.8E-17 9.4E-22 152.3 14.6 149 208-361 44-195 (197)
107 2xot_A Amphoterin-induced prot 99.7 1.8E-17 6.2E-22 168.4 14.4 173 234-433 21-204 (361)
108 3e6j_A Variable lymphocyte rec 99.7 8.9E-17 3.1E-21 152.6 16.3 144 235-380 23-169 (229)
109 1dce_A Protein (RAB geranylger 99.7 4.1E-20 1.4E-24 198.7 -8.1 181 251-435 346-550 (567)
110 2v9t_B SLIT homolog 2 protein 99.7 7.9E-17 2.7E-21 152.0 15.3 151 280-433 14-167 (220)
111 2xot_A Amphoterin-induced prot 99.7 2.5E-17 8.7E-22 167.4 12.6 172 210-383 20-202 (361)
112 2v9t_B SLIT homolog 2 protein 99.7 5.4E-17 1.9E-21 153.2 13.7 145 235-381 15-163 (220)
113 3e6j_A Variable lymphocyte rec 99.7 1.2E-16 4.2E-21 151.7 15.9 153 278-434 20-175 (229)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 1.3E-16 4.5E-21 150.5 15.4 151 280-433 14-168 (220)
115 2v70_A SLIT-2, SLIT homolog 2 99.7 1.4E-16 4.7E-21 150.4 14.6 144 235-380 15-163 (220)
116 2p1m_B Transport inhibitor res 99.7 1.1E-18 3.7E-23 188.8 -1.6 174 323-500 288-496 (594)
117 1dce_A Protein (RAB geranylger 99.7 3.7E-19 1.3E-23 191.2 -7.5 193 228-425 346-567 (567)
118 4b8c_D Glucose-repressible alc 99.7 2.3E-17 7.7E-22 182.6 5.7 216 208-431 173-404 (727)
119 2p1m_B Transport inhibitor res 99.7 3.6E-18 1.2E-22 184.7 -1.0 204 275-498 287-519 (594)
120 2ell_A Acidic leucine-rich nuc 99.7 3.6E-16 1.2E-20 140.8 11.5 133 207-340 23-163 (168)
121 2ell_A Acidic leucine-rich nuc 99.6 6.6E-16 2.3E-20 139.0 11.1 133 230-363 23-163 (168)
122 4b8c_D Glucose-repressible alc 99.6 2.4E-16 8.3E-21 174.3 9.1 147 254-408 173-329 (727)
123 3un9_A NLR family member X1; l 99.6 7.6E-17 2.6E-21 164.3 4.4 228 96-385 1-254 (372)
124 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.3E-20 133.7 8.6 124 208-332 17-148 (149)
125 1a9n_A U2A', U2A'; complex (nu 99.6 2.7E-15 9.3E-20 136.2 9.1 129 251-380 16-150 (176)
126 2wfh_A SLIT homolog 2 protein 99.6 1.6E-14 5.6E-19 133.2 12.6 125 211-337 13-139 (193)
127 2je0_A Acidic leucine-rich nuc 99.6 6E-15 2.1E-19 129.9 8.9 83 231-314 17-102 (149)
128 3sb4_A Hypothetical leucine ri 99.5 1.2E-14 4.2E-19 145.5 11.3 56 253-309 100-157 (329)
129 1a9n_A U2A', U2A'; complex (nu 99.5 1.1E-14 3.6E-19 132.3 9.6 127 208-335 19-151 (176)
130 2wfh_A SLIT homolog 2 protein 99.5 3.5E-14 1.2E-18 131.0 13.2 125 234-360 13-139 (193)
131 1w8a_A SLIT protein; signaling 99.5 2.7E-14 9.2E-19 131.6 12.0 123 235-359 12-138 (192)
132 1w8a_A SLIT protein; signaling 99.5 2.2E-14 7.6E-19 132.1 11.2 127 210-338 10-140 (192)
133 1ds9_A Outer arm dynein; leuci 99.5 5.1E-16 1.7E-20 143.9 -2.8 128 209-338 24-154 (198)
134 2o6r_A Variable lymphocyte rec 99.5 2.4E-13 8.1E-18 123.3 13.7 126 210-337 9-137 (177)
135 2o6r_A Variable lymphocyte rec 99.5 4.1E-13 1.4E-17 121.8 14.2 127 233-361 9-138 (177)
136 3sb4_A Hypothetical leucine ri 99.5 2E-13 7E-18 136.6 12.8 228 192-425 34-328 (329)
137 4fdw_A Leucine rich hypothetic 99.5 6.5E-13 2.2E-17 136.5 15.2 262 210-501 115-386 (401)
138 1ds9_A Outer arm dynein; leuci 99.4 4E-15 1.4E-19 137.8 -2.5 139 265-433 36-187 (198)
139 4fdw_A Leucine rich hypothetic 99.4 9.5E-12 3.2E-16 127.8 17.0 219 208-438 135-365 (401)
140 3un9_A NLR family member X1; l 99.3 2.1E-13 7.3E-18 138.8 2.2 179 253-431 71-283 (372)
141 2r9u_A Variable lymphocyte rec 99.3 8.9E-12 3E-16 112.8 12.1 101 211-313 15-118 (174)
142 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 111.5 11.9 100 211-312 12-114 (170)
143 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 111.8 11.9 105 234-340 15-121 (174)
144 3g39_A Variable lymphocyte rec 99.3 1.2E-11 4.2E-16 111.4 10.9 103 233-337 11-115 (170)
145 2ifg_A High affinity nerve gro 99.1 6E-10 2.1E-14 111.9 12.6 102 328-433 12-118 (347)
146 2ifg_A High affinity nerve gro 99.1 3.3E-10 1.1E-14 113.8 10.2 103 211-314 11-117 (347)
147 2ra8_A Uncharacterized protein 98.9 8.2E-10 2.8E-14 111.6 5.9 83 345-429 250-341 (362)
148 2ra8_A Uncharacterized protein 98.9 1.4E-09 4.9E-14 109.8 6.5 67 368-435 250-324 (362)
149 4fs7_A Uncharacterized protein 98.9 1.7E-08 5.7E-13 103.3 13.7 259 208-495 71-376 (394)
150 1io0_A Tropomodulin; LRR prote 98.8 2.7E-09 9.2E-14 97.4 4.6 112 322-433 34-166 (185)
151 1io0_A Tropomodulin; LRR prote 98.7 6.6E-09 2.3E-13 94.7 4.7 106 207-312 35-163 (185)
152 4gt6_A Cell surface protein; l 98.7 2.1E-07 7.2E-12 95.1 15.9 82 342-428 283-367 (394)
153 4gt6_A Cell surface protein; l 98.7 2.6E-07 8.9E-12 94.4 16.4 259 209-496 65-368 (394)
154 4fs7_A Uncharacterized protein 98.6 3.2E-07 1.1E-11 93.7 13.0 193 226-428 157-376 (394)
155 1pgv_A TMD-1, tropomodulin TMD 98.2 1.1E-06 3.9E-11 80.0 4.6 110 322-431 39-170 (197)
156 1pgv_A TMD-1, tropomodulin TMD 98.1 2.6E-06 8.8E-11 77.7 4.7 105 207-311 40-168 (197)
157 3rw6_A Nuclear RNA export fact 98.0 6.9E-07 2.4E-11 85.8 0.5 62 251-313 167-233 (267)
158 4h09_A Hypothetical leucine ri 98.0 8.3E-05 2.8E-09 75.1 15.9 131 297-434 214-348 (379)
159 4h09_A Hypothetical leucine ri 98.0 9.8E-05 3.4E-09 74.5 15.1 142 272-420 212-358 (379)
160 3rw6_A Nuclear RNA export fact 98.0 2.8E-06 9.7E-11 81.5 2.9 79 345-424 168-257 (267)
161 3e4g_A ATP synthase subunit S, 97.9 4.8E-06 1.7E-10 74.4 3.8 85 347-432 61-154 (176)
162 3e4g_A ATP synthase subunit S, 97.5 8.2E-05 2.8E-09 66.4 4.6 34 371-405 115-149 (176)
163 3rfe_A Platelet glycoprotein I 96.7 0.0034 1.2E-07 53.1 7.0 55 281-337 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.4 0.0029 1E-07 53.4 4.8 53 235-289 12-67 (130)
165 2ga1_A Protein of unknown func 65.3 4.4 0.00015 32.3 3.1 39 43-81 63-101 (106)
166 2lz0_A Uncharacterized protein 42.3 24 0.00084 27.4 4.0 11 297-307 17-27 (100)
167 2lz0_A Uncharacterized protein 41.3 29 0.001 27.0 4.3 37 272-309 15-52 (100)
168 1wlp_A Cytochrome B-245 light 27.7 22 0.00074 20.2 0.9 16 28-43 2-18 (26)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=5.8e-28 Score=244.32 Aligned_cols=264 Identities=20% Similarity=0.255 Sum_probs=174.4
Q ss_pred CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
.++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA 141 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence 3567777777777776655 667777777777777776663 46677777777777777776655 66677777777777
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI 366 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l 366 (516)
|........+..+++|++|++++|.+..++. +..+++|+.|++++|.+..++. +..+++|+.|++++|.+++++. +
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~ 217 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-V 217 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred CCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-h
Confidence 7433333446666777777777777666554 3357777777777777776654 6666667777777776666544 6
Q ss_pred CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182 367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK 446 (516)
Q Consensus 367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 446 (516)
..+++|++|++++|.+ ..++. +..+++|++|++++|.++.++ .+..+++|+.|++++|.++..+
T Consensus 218 ~~~~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~------------ 281 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKI--TDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS------------ 281 (347)
T ss_dssp GGCTTCCEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCCCG------------
T ss_pred hcCCcCCEEEccCCcc--CCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCccCCCh------------
Confidence 6667777777777743 34443 666777777777777777663 5667777777777777776542
Q ss_pred HHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 447 TFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 447 ~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
.+...++++.+++++|++++..+..+...+++..|++++|++++..+
T Consensus 282 ---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 282 ---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp ---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred ---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence 11234566777777777776655555566677777777777776655
No 2
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=8.5e-29 Score=261.56 Aligned_cols=292 Identities=21% Similarity=0.221 Sum_probs=210.3
Q ss_pred CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
...++.|++++|.++.++ ..|..+++|++|+|++|.++.+ |..|.++++|++|+|++|.++.+|. .|..+++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 467899999999998774 5788999999999999999877 7788999999999999999998876 578889999999
Q ss_pred eeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC
Q 010182 284 VSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 284 Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~ 361 (516)
+++|.+..+ +..+..+++|++|++++|.++.+....+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 999988865 5677888999999999999888877777778899999999998887764 47888888888888888887
Q ss_pred cc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 362 LP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 362 l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
++ ..+..+++|+.|++++|... ..++..+....+|++|++++|+++.+| ..+..+++|+.|+|++|.++..+...+.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 269 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYL-DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH 269 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTC-CEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred eChhhcccCcccceeeCCCCccc-cccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence 54 36777778888888776432 444444444456777777777777666 4566667777777777766655443322
Q ss_pred chhHHHHHHHhhhhh-----hHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccc
Q 010182 440 EGVGAVKTFMAKRWL-----DILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSG 499 (516)
Q Consensus 440 ~~~~~~~~~~~~~~l-----~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~ 499 (516)
.........+..+.+ ..+...++++.++|++|++++.....+...+++..|++++|.+++
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 270 ELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred ccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence 111000000011110 112234567777777777776655555556677777777777765
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=1.5e-28 Score=257.75 Aligned_cols=275 Identities=22% Similarity=0.212 Sum_probs=173.8
Q ss_pred CCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCC-Cc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEE
Q 010182 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLE-VI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILD 283 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~-~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ 283 (516)
+++++|++++|.++.+ +..|.++++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..++.+++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 5678888888888766 556778888888888888775 44 45677788888888888877755 55677777888888
Q ss_pred eeCCCCCC-CCc--ccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCcccc-chhc--------------
Q 010182 284 VSGNKLSA-LPD--SISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLP-TSIG-------------- 344 (516)
Q Consensus 284 Ls~n~l~~-l~~--~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~-~~l~-------------- 344 (516)
+++|.++. ++. .+..+++|++|++++|.++.+. ...+..+++|++|++++|.+..++ ..+.
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 88877764 222 2667777777777777777663 333556777777777777765432 1221
Q ss_pred --------------------CCCCCcEEEccCCCCC--------------------------------------------
Q 010182 345 --------------------EMASLRHLDAHFNELH-------------------------------------------- 360 (516)
Q Consensus 345 --------------------~l~~L~~L~Ls~n~l~-------------------------------------------- 360 (516)
.+++|++|++++|.++
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 2234555555555443
Q ss_pred -------------------C-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCc
Q 010182 361 -------------------G-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDK 419 (516)
Q Consensus 361 -------------------~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~ 419 (516)
+ .+..+..+++|+.|++++|.+. ...+..+..+++|++|+|++|+++.+ |..+..+++
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc-ccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 3 2334455555555555555332 11233455555555666655555554 345555556
Q ss_pred ccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccc
Q 010182 420 LIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSG 499 (516)
Q Consensus 420 L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~ 499 (516)
|++|+|++|.++..++.. +...++++.++|++|++++.....+...++++.|++++|.+++
T Consensus 349 L~~L~Ls~N~l~~~~~~~-------------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQS-------------------FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp CCEEECCSSCCCEECTTT-------------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCEEECCCCcccccChhh-------------------ccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCccc
Confidence 666666666555443222 2235677888888888887655555566778888888888887
Q ss_pred ccC
Q 010182 500 ILG 502 (516)
Q Consensus 500 ~~~ 502 (516)
..+
T Consensus 410 ~~~ 412 (455)
T 3v47_A 410 SCP 412 (455)
T ss_dssp CTT
T ss_pred CCC
Confidence 654
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=9.8e-30 Score=278.31 Aligned_cols=229 Identities=22% Similarity=0.294 Sum_probs=190.7
Q ss_pred CCCccEEEeecCCCCc------------------chHhhc--CCCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCC
Q 010182 207 GKSLEQVDLSSRGLRF------------------LPEAFG--RIAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNL 265 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~------------------l~~~~~--~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~ 265 (516)
.++|++|+|++|.++. +|..++ ++++|++|++++|.+. .+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 4789999999999998 999888 9999999999999876 679999999999999999998
Q ss_pred -CCC--cchhhcCC------CCCcEEEeeCCCCCCCCc--ccccCCCCcEEeCCCCCCC-cCChhhhhcCCCCcEEecCC
Q 010182 266 -LET--LPDSIGLL------DNLKILDVSGNKLSALPD--SISHCRSLVELDASFNRLA-YLPTNIGHELVNLQKLLVPL 333 (516)
Q Consensus 266 -l~~--l~~~l~~l------~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~ 333 (516)
++. +|..++.+ ++|++|++++|.++.+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++++
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAY 362 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCC
Confidence 884 88877776 999999999999999998 8999999999999999998 787 455688999999999
Q ss_pred CCCccccchhcCCCC-CcEEEccCCCCCCcchhhCCCC--CCcEEEcccCCCCCCCcchhhc-------CCCCccEEecc
Q 010182 334 NKIRFLPTSIGEMAS-LRHLDAHFNELHGLPATIGKLT--NLEILNVSSNFTDMKELPETFG-------ELTNLKELDLS 403 (516)
Q Consensus 334 n~l~~l~~~l~~l~~-L~~L~Ls~n~l~~l~~~l~~l~--~L~~L~L~~n~~~~~~l~~~l~-------~l~~L~~L~L~ 403 (516)
|.+..+|..+..+++ |++|++++|.++.+|..+...+ +|+.|++++|.+. ..+|..+. .+++|+.|+|+
T Consensus 363 N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~~~~~~~~~~~L~~L~Ls 441 (636)
T 4eco_A 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIG-SVDGKNFDPLDPTPFKGINVSSINLS 441 (636)
T ss_dssp SEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTT-TTTTCSSCTTCSSCCCCCCEEEEECC
T ss_pred CccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCC-CcchhhhcccccccccCCCCCEEECc
Confidence 999988888888888 9999999999988888776654 7888888888655 33455555 56678888888
Q ss_pred CCCCCCchh-hhcCCCcccEEecccCCCCCCCHHHH
Q 010182 404 NNQIHALPN-TFGRLDKLIKLNLEENPMVIPPVEVV 438 (516)
Q Consensus 404 ~n~i~~lp~-~l~~l~~L~~L~L~~N~l~~~~~~~~ 438 (516)
+|+++.+|. .+..+++|+.|+|++|.++.++...+
T Consensus 442 ~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence 888887773 44557777777777777776655443
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=1e-28 Score=276.13 Aligned_cols=276 Identities=25% Similarity=0.322 Sum_probs=212.8
Q ss_pred CccEEEeecCCCC-cchHhhcC--CCCCcEEEeecCCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcEEE
Q 010182 209 SLEQVDLSSRGLR-FLPEAFGR--IAGLRLMSLSNNHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKILD 283 (516)
Q Consensus 209 ~L~~L~L~~~~l~-~l~~~~~~--l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~ 283 (516)
+|++|++++|.++ .++..+.. +++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 5666666666554 33343433 566777777777776 55777888888888888888777 5677778888888888
Q ss_pred eeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCCCCcEEEccCCCCCC
Q 010182 284 VSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 284 Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
+++|.+. .+|..+..+++|++|++++|.++......+..+++|+.|++++|++. .+|..++.+++|++|++++|.+++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 528 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC
Confidence 8888877 56777888888888888888887544444556888888888888887 667778888888888888888875
Q ss_pred -cchhhCCCCCCcEEEcccCCCCCCCcc----------------------------------------------------
Q 010182 362 -LPATIGKLTNLEILNVSSNFTDMKELP---------------------------------------------------- 388 (516)
Q Consensus 362 -l~~~l~~l~~L~~L~L~~n~~~~~~l~---------------------------------------------------- 388 (516)
+|..+..+++|+.|++++|.+. ..+|
T Consensus 529 ~~p~~l~~l~~L~~L~Ls~N~l~-g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 529 NIPAELGDCRSLIWLDLNTNLFN-GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEE-SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred cCCHHHcCCCCCCEEECCCCccC-CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 7778888888888888887443 1222
Q ss_pred ------------------hhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHH
Q 010182 389 ------------------ETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFM 449 (516)
Q Consensus 389 ------------------~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~ 449 (516)
..++.+++|+.|+|++|+++ .+|..++.+++|+.|+|++|.+++..+..+
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l----------- 676 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV----------- 676 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG-----------
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHH-----------
Confidence 23445678999999999998 678999999999999999999986544332
Q ss_pred hhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCCC
Q 010182 450 AKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGGG 504 (516)
Q Consensus 450 ~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~~ 504 (516)
.....++.|+|++|+++|..+..+...+.++.|++++|+++|.+|..
T Consensus 677 --------~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 677 --------GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp --------GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred --------hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 24577899999999999999999999999999999999999998864
No 6
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=2.2e-28 Score=245.88 Aligned_cols=264 Identities=23% Similarity=0.278 Sum_probs=184.7
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~ 286 (516)
+++.++++++.++.+|..+. ++|++|++++|.++.++. .|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 56777777777777776443 577778888887777644 677777888888888877766 55777777888888888
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc---cccchhcCCCCCcEEEccCCCCCCcc
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR---FLPTSIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~---~l~~~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
|.++.+|..+. ++|++|++++|.++.++...+..+++|+.|++++|.+. ..+..+..+++|++|++++|.++.+|
T Consensus 110 n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~ 187 (330)
T 1xku_A 110 NQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 187 (330)
T ss_dssp SCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCC
T ss_pred CcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCC
Confidence 87777766554 67778888888777777776667777888888777775 33456677777788888777777776
Q ss_pred hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182 364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV 442 (516)
Q Consensus 364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 442 (516)
..+. ++|++|++++|.+. ...+..+..+++|++|++++|.++.++ ..+..+++|++|++++|.++.++..+
T Consensus 188 ~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l----- 259 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL----- 259 (330)
T ss_dssp SSCC--TTCSEEECTTSCCC-EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTT-----
T ss_pred cccc--ccCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhh-----
Confidence 6543 67777777777543 122456777777777777777777665 46777777777777777777554321
Q ss_pred HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc------cccccEEEccCCcccc
Q 010182 443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL------TRSTSWLKTVGENVSG 499 (516)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~------~~~l~~l~l~~N~ls~ 499 (516)
...++++.+++++|++++.....+.. ...+..+++++|.+..
T Consensus 260 ---------------~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~ 307 (330)
T 1xku_A 260 ---------------ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307 (330)
T ss_dssp ---------------TTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCG
T ss_pred ---------------ccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccc
Confidence 13456677777777777665544432 2456677777777653
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.96 E-value=2.8e-27 Score=239.22 Aligned_cols=261 Identities=20% Similarity=0.265 Sum_probs=227.2
Q ss_pred hCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 206 AGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
..++|++|++++|.++.++ .+..+++|++|++++|.+..++. +..+++|++|++++|.....+..+..+++|++|+++
T Consensus 86 ~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~ 163 (347)
T 4fmz_A 86 NLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVT 163 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECC
T ss_pred cCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEec
Confidence 3478999999999999886 58999999999999999998866 899999999999999655444558899999999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchh
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPAT 365 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~ 365 (516)
+|.+..++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|++|++++|.+++++.
T Consensus 164 ~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~- 238 (347)
T 4fmz_A 164 ESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP- 238 (347)
T ss_dssp SSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc-
Confidence 999998855 8899999999999999998876 4569999999999999998765 8889999999999999999876
Q ss_pred hCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182 366 IGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV 445 (516)
Q Consensus 366 l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 445 (516)
+..+++|++|++++|.+. .+ ..+..+++|++|++++|+++.++ .+..+++|+.|++++|.++..++..+.
T Consensus 239 ~~~l~~L~~L~l~~n~l~--~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~------ 308 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQIS--DI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIG------ 308 (347)
T ss_dssp GTTCTTCCEEECCSSCCC--CC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHH------
T ss_pred hhcCCCCCEEECCCCccC--CC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhh------
Confidence 889999999999999554 44 46889999999999999999985 688999999999999999876554332
Q ss_pred HHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccc
Q 010182 446 KTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVS 498 (516)
Q Consensus 446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls 498 (516)
..++++.+++++|++++..+ ....+.+..+++++|.|+
T Consensus 309 -------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 309 -------------GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -------------TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -------------ccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 45788999999999998755 667889999999999986
No 8
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.2e-28 Score=246.20 Aligned_cols=262 Identities=24% Similarity=0.299 Sum_probs=179.7
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~ 286 (516)
+++.++++++.++.+|..+. ++|++|++++|.++.+ +..|.++++|++|++++|.++.+ |..++.+++|++|++++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 57777777777777776543 6777788877777766 34677777788888877777765 55677777788888877
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc---ccchhcCCCCCcEEEccCCCCCCcc
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF---LPTSIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
|.++.+|..+. ++|++|++++|.++.++...+..+++|+.|++++|.++. .+..+..+ +|++|++++|.++.+|
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 77777766554 677777887777777777666667777777777777752 34445555 7777777777777776
Q ss_pred hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182 364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGV 442 (516)
Q Consensus 364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 442 (516)
..+. ++|++|++++|.+. ...+..+..+++|+.|++++|+|+.++ ..+..+++|+.|++++|.++.++..
T Consensus 189 ~~~~--~~L~~L~l~~n~i~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~------ 259 (332)
T 2ft3_A 189 KDLP--ETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG------ 259 (332)
T ss_dssp SSSC--SSCSCCBCCSSCCC-CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT------
T ss_pred cccc--CCCCEEECCCCcCC-ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh------
Confidence 6543 57777777777543 222356677777777777777777665 4677777777777777777755432
Q ss_pred HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc------cccccEEEccCCccc
Q 010182 443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL------TRSTSWLKTVGENVS 498 (516)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~------~~~l~~l~l~~N~ls 498 (516)
+...++++.+++++|++++.....+.. ...+..+++++|.++
T Consensus 260 --------------l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 260 --------------LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp --------------GGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred --------------hhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 123456677777777777665444332 244667777777766
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=2.3e-27 Score=244.05 Aligned_cols=263 Identities=21% Similarity=0.198 Sum_probs=176.0
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L 284 (516)
++|++|++++|.++.++. .|..+++|++|++++|.++.+ +..++.+++|++|++++|.++.+|.. +..+++|++|++
T Consensus 69 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 148 (390)
T 3o6n_A 69 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 148 (390)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEEC
Confidence 556666666666665543 566666666666666666655 33456666666666666666666553 356666666666
Q ss_pred eCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCC-------------------CCccccchhc
Q 010182 285 SGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-------------------KIRFLPTSIG 344 (516)
Q Consensus 285 s~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-------------------~l~~l~~~l~ 344 (516)
++|.++.++ ..+..+++|++|++++|.++.++.. .+++|+.|++++| .+..++..
T Consensus 149 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~-- 223 (390)
T 3o6n_A 149 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP-- 223 (390)
T ss_dssp CSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGG---GCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECC--
T ss_pred CCCccCccChhhccCCCCCCEEECCCCcCCccccc---cccccceeecccccccccCCCCcceEEECCCCeeeecccc--
Confidence 666666553 3455666666666666666554322 2333333333333 33322221
Q ss_pred CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEe
Q 010182 345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLN 424 (516)
Q Consensus 345 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~ 424 (516)
..++|++|++++|.+++. ..+..+++|+.|++++|.+. ...|..+..+++|++|+|++|+++.+|..+..+++|++|+
T Consensus 224 ~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~ 301 (390)
T 3o6n_A 224 VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 301 (390)
T ss_dssp CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEE
T ss_pred ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCC-CcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEE
Confidence 134677777777777776 45778888999999988654 3346778888899999999999988887777888999999
Q ss_pred cccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 425 LEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 425 L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
+++|++...+..+ ..+++++.+++++|+++... ....+.+..|++++|.+++.
T Consensus 302 L~~n~l~~~~~~~--------------------~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 302 LSHNHLLHVERNQ--------------------PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp CCSSCCCCCGGGH--------------------HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCcceecCccc--------------------cccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 9999888664421 24678899999999998764 34467899999999999874
No 10
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.4e-27 Score=240.05 Aligned_cols=272 Identities=19% Similarity=0.225 Sum_probs=227.5
Q ss_pred hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182 206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILD 283 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ 283 (516)
..+.++.|++++|.++.++. .|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+. ++|++|+
T Consensus 50 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 34789999999999998876 699999999999999999987 7899999999999999999999987654 7999999
Q ss_pred eeCCCCCCCCc-ccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCC
Q 010182 284 VSGNKLSALPD-SISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH 360 (516)
Q Consensus 284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 360 (516)
+++|.++.++. .+..+++|++|++++|.++. .....+..+++|+.|++++|.+..+|..+. ++|++|++++|.++
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKIT 205 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCC
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCC
Confidence 99999998754 57889999999999999864 455556679999999999999999887664 79999999999999
Q ss_pred Cc-chhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHH
Q 010182 361 GL-PATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVV 438 (516)
Q Consensus 361 ~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~ 438 (516)
++ +..+..+++|+.|++++|.+. .+ +..+..+++|++|+|++|+++.+|..+..+++|++|++++|+|+..+...+
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFNSIS--AVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCC--EECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCc--eeChhhccCCCCCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 86 678999999999999999654 34 347889999999999999999999999999999999999999999887665
Q ss_pred hchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCC--CCCccccccccEEEccCCc
Q 010182 439 KEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQ--MPTGWLTRSTSWLKTVGEN 496 (516)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~--~~~~~~~~~l~~l~l~~N~ 496 (516)
+.... ......++.+++++|.+.... +..+.....++.+++++|+
T Consensus 284 ~~~~~-------------~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 284 CPPGY-------------NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCSSC-------------CTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCccc-------------ccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 43210 012355678999999987633 3344456788999999985
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=255.85 Aligned_cols=275 Identities=25% Similarity=0.294 Sum_probs=207.1
Q ss_pred CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~ 283 (516)
.++|++|+|++|.++.+ |..|..+++|++|+|++|.++.++. .|.++++|++|++++|.++.+ +..|..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 37899999999999876 6678999999999999999998865 578899999999999999866 45788889999999
Q ss_pred eeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCC--------------
Q 010182 284 VSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMA-------------- 347 (516)
Q Consensus 284 Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~-------------- 347 (516)
+++|.+..+ +..+..+++|++|++++|.++.++...+..+++|+.|++++|.+..++. .+..++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~ 214 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD 214 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC
T ss_pred CCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc
Confidence 999988866 4578888899999999999888888777778888888888887775433 344444
Q ss_pred ----------CCcEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhc
Q 010182 348 ----------SLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFG 415 (516)
Q Consensus 348 ----------~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~ 415 (516)
+|++|++++|.++.++ ..+..+++|+.|+|++|.+. ...+..+..+++|++|+|++|+++.+ |..+.
T Consensus 215 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 293 (477)
T 2id5_A 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293 (477)
T ss_dssp EECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBT
T ss_pred ccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhc
Confidence 4555666666666665 36777888888888888544 22234567788888888888888876 47788
Q ss_pred CCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCC
Q 010182 416 RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGE 495 (516)
Q Consensus 416 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N 495 (516)
.+++|+.|+|++|.++..+...+. ...+++.++|++|.+.+.+... |.......+++.++
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~~-------------------~l~~L~~L~l~~N~l~c~c~~~-~~~~~~~~~~~~~~ 353 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVFH-------------------SVGNLETLILDSNPLACDCRLL-WVFRRRWRLNFNRQ 353 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGBS-------------------CGGGCCEEECCSSCEECSGGGH-HHHTTTTSSCCTTC
T ss_pred CcccCCEEECCCCcCceeCHhHcC-------------------CCcccCEEEccCCCccCccchH-hHHhhhhccccCcc
Confidence 888888888888888877664432 3467899999999999875433 33333334555566
Q ss_pred ccccccC
Q 010182 496 NVSGILG 502 (516)
Q Consensus 496 ~ls~~~~ 502 (516)
......|
T Consensus 354 ~~~C~~p 360 (477)
T 2id5_A 354 QPTCATP 360 (477)
T ss_dssp CCBEEES
T ss_pred CceeCCc
Confidence 5554443
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=4.1e-27 Score=236.71 Aligned_cols=234 Identities=25% Similarity=0.326 Sum_probs=209.2
Q ss_pred HHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCC
Q 010182 200 GLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNL 279 (516)
Q Consensus 200 ~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L 279 (516)
..+......+++.|++++|.++.+|..+.++++|++|++++|.++.+|..++.+++|++|++++|.++.+|..++.+++|
T Consensus 73 ~~l~~~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 73 DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp HHHHHHTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred HHHhcccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence 34445566899999999999999999899999999999999999999999999999999999999999999999999999
Q ss_pred cEEEeeCCC-CCCCCccccc---------CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCC
Q 010182 280 KILDVSGNK-LSALPDSISH---------CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL 349 (516)
Q Consensus 280 ~~L~Ls~n~-l~~l~~~l~~---------l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L 349 (516)
++|++++|. +..+|..+.. +++|++|++++|.++.+|..+. .+++|++|++++|.+..+|..+..+++|
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l~~l~~~l~~l~~L 231 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPLSALGPAIHHLPKL 231 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCCCcCchhhccCCCC
Confidence 999999975 4577776654 9999999999999999987754 6999999999999999999999999999
Q ss_pred cEEEccCCCCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEeccc
Q 010182 350 RHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEE 427 (516)
Q Consensus 350 ~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~ 427 (516)
++|++++|.+.+ +|..+..+++|+.|++++|.+. ..+|..+..+++|+.|+|++|++. .+|..+..+++|+.+++..
T Consensus 232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL-LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310 (328)
T ss_dssp CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTC-CBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCG
T ss_pred CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCch-hhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCH
Confidence 999999988776 7888999999999999998654 678889999999999999998765 7899999999999999999
Q ss_pred CCCCCCCH
Q 010182 428 NPMVIPPV 435 (516)
Q Consensus 428 N~l~~~~~ 435 (516)
|.+.....
T Consensus 311 ~~~~~l~~ 318 (328)
T 4fcg_A 311 HLQAQLDQ 318 (328)
T ss_dssp GGSCC---
T ss_pred HHHHHHhh
Confidence 88775543
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.8e-27 Score=266.38 Aligned_cols=267 Identities=18% Similarity=0.283 Sum_probs=176.3
Q ss_pred CCCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCC-CCC--cchhhcCC-------CCccEEEeeCCCCCCcch--hh
Q 010182 207 GKSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNH-LEV--IPDSIAGL-------VNLEELNLASNLLETLPD--SI 273 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~-l~~--l~~~l~~l-------~~L~~L~Ls~n~l~~l~~--~l 273 (516)
.++|++|+|++|.+. .+|..|.++++|+.|++++|. ++. +|..++.+ ++|++|++++|.++.+|. .+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 478999999998855 778888899999999999997 774 67665544 488888888888888887 88
Q ss_pred cCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCC-CcEEecCCCCCccccchhcCCCC--Cc
Q 010182 274 GLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVN-LQKLLVPLNKIRFLPTSIGEMAS--LR 350 (516)
Q Consensus 274 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~-L~~L~L~~n~l~~l~~~l~~l~~--L~ 350 (516)
+.+++|++|++++|.++.+| .+..+++|+.|++++|.++.+|..+. .+++ |+.|++++|.+..+|..+..+.. |+
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~-~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~ 647 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFC-AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMG 647 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSC-EECTTCCEEECCSSCCCSCCSCCCTTCSSCEE
T ss_pred hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHh-hccccCCEEECcCCCCCcCchhhhccccCCCC
Confidence 88888888888888888887 78888888888888888887776644 4777 88888888887777655544332 44
Q ss_pred EEEccCCC-----------------------------CCCcchhh-CCCCCCcEEEcccCCCCCCCcchhhcCC------
Q 010182 351 HLDAHFNE-----------------------------LHGLPATI-GKLTNLEILNVSSNFTDMKELPETFGEL------ 394 (516)
Q Consensus 351 ~L~Ls~n~-----------------------------l~~l~~~l-~~l~~L~~L~L~~n~~~~~~l~~~l~~l------ 394 (516)
.|++++|. ++.+|..+ ..+++|+.|+|++|.+. .+|..+...
T Consensus 648 ~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~--~ip~~~~~~~~~~l~ 725 (876)
T 4ecn_A 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT--SIPENSLKPKDGNYK 725 (876)
T ss_dssp EEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS--CCCTTSSSCTTSCCT
T ss_pred EEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC--ccChHHhcccccccc
Confidence 45554444 44444433 24555666666665332 444433221
Q ss_pred --CCccEEeccCCCCCCchhhhc--CCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhccccccc
Q 010182 395 --TNLKELDLSNNQIHALPNTFG--RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEG 470 (516)
Q Consensus 395 --~~L~~L~L~~n~i~~lp~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~ 470 (516)
++|+.|+|++|+|+.+|..+. .+++|+.|+|++|.++.++..+ ...++++.|+|++
T Consensus 726 nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l--------------------~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 726 NTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP--------------------LNSSQLKAFGIRH 785 (876)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGG--------------------GGCTTCCEEECCC
T ss_pred ccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhh--------------------hcCCCCCEEECCC
Confidence 256666666666666665554 6666666666666666543322 1234455555543
Q ss_pred ------ccCCCCCCCCccccccccEEEccCCcc
Q 010182 471 ------NNNEGEQMPTGWLTRSTSWLKTVGENV 497 (516)
Q Consensus 471 ------N~i~~~~~~~~~~~~~l~~l~l~~N~l 497 (516)
|++.+..+..+...++|..|++++|++
T Consensus 786 N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp CBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC
T ss_pred CCCcccccccccChHHHhcCCCCCEEECCCCCC
Confidence 445555444555555555555555555
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=5.4e-27 Score=254.80 Aligned_cols=263 Identities=21% Similarity=0.200 Sum_probs=188.0
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L 284 (516)
++|++|++++|.++.++. .|+.+++|++|+|++|.++.++ ..|+++++|++|+|++|.++.+|.. |+.+++|++|++
T Consensus 75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 154 (597)
T 3oja_B 75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSM 154 (597)
T ss_dssp CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEe
Confidence 567777777777776544 5777777777777777777663 3457777777777777777776654 467777777777
Q ss_pred eCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCC-------------------ccccchhc
Q 010182 285 SGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKI-------------------RFLPTSIG 344 (516)
Q Consensus 285 s~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l-------------------~~l~~~l~ 344 (516)
++|.++.++ ..+..+++|++|++++|.++.++.. .+++|+.|++++|.+ ..++..+
T Consensus 155 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~- 230 (597)
T 3oja_B 155 SNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS---LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV- 230 (597)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG---GCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSC-
T ss_pred eCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh---hhhhhhhhhcccCccccccCCchhheeeccCCccccccccc-
Confidence 777777553 3566777777777777777665432 234444444444433 3332221
Q ss_pred CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEe
Q 010182 345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLN 424 (516)
Q Consensus 345 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~ 424 (516)
..+|+.|++++|.+++. ..+..+++|+.|+|++|.+. ...|..++.+++|+.|+|++|.++.+|..+..+++|+.|+
T Consensus 231 -~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 307 (597)
T 3oja_B 231 -NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLD 307 (597)
T ss_dssp -CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-EEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEE
T ss_pred -CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccC-CCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEE
Confidence 24677788888877775 56778889999999998654 3346788889999999999999998887778889999999
Q ss_pred cccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 425 LEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 425 L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
|++|.+..++..+ ..+++++.|+|++|++++.. ....+++..|++++|.+++.
T Consensus 308 Ls~N~l~~i~~~~--------------------~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 308 LSHNHLLHVERNQ--------------------PQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp CCSSCCCCCGGGH--------------------HHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCCCCCccCccc--------------------ccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 9999988654422 25678999999999998764 34457899999999999864
No 15
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.95 E-value=2e-27 Score=239.26 Aligned_cols=272 Identities=19% Similarity=0.201 Sum_probs=226.8
Q ss_pred hCCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182 206 AGKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILD 283 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ 283 (516)
..++++.|++++|.++.++ ..|..+++|++|++++|.++.+ |..+..+++|++|++++|.++.+|..+. ++|++|+
T Consensus 52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 3468999999999999885 4799999999999999999977 7789999999999999999999987654 8999999
Q ss_pred eeCCCCCCCCc-ccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCC
Q 010182 284 VSGNKLSALPD-SISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELH 360 (516)
Q Consensus 284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~ 360 (516)
+++|.++.++. .+..+++|++|++++|.++. .....+..+ +|+.|++++|.++.+|..+. ++|++|++++|.++
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCSSCCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcccc--CCCCEEECCCCcCC
Confidence 99999998865 48889999999999999964 445555555 99999999999999887665 78999999999999
Q ss_pred Ccc-hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 361 GLP-ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 361 ~l~-~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
+++ ..+..+++|+.|++++|.+. ...+..+..+++|++|++++|+++.+|..+..+++|+.|++++|+++..+...+.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSSCCC-CCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ccCHHHhcCCCCCCEEECCCCcCC-cCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 975 68899999999999999665 2234578899999999999999999999999999999999999999988876654
Q ss_pred chhHHHHHHHhhhhhhHhHHHhhhcccccccccCC--CCCCCCccccccccEEEccCCc
Q 010182 440 EGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNE--GEQMPTGWLTRSTSWLKTVGEN 496 (516)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~--~~~~~~~~~~~~l~~l~l~~N~ 496 (516)
.... ......++.+++++|.+. +..+.++...+.++.+++++|+
T Consensus 286 ~~~~-------------~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGF-------------GVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSC-------------CSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccc-------------ccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 3110 011355788999999988 3444455567889999999885
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.95 E-value=1.8e-28 Score=274.11 Aligned_cols=224 Identities=30% Similarity=0.447 Sum_probs=172.4
Q ss_pred CCccEEEeecCCCC-cchHhhcCCCCCcEEEeecCCCC-Ccchh-hcCCCCccEEEeeCCCCC-CcchhhcC--------
Q 010182 208 KSLEQVDLSSRGLR-FLPEAFGRIAGLRLMSLSNNHLE-VIPDS-IAGLVNLEELNLASNLLE-TLPDSIGL-------- 275 (516)
Q Consensus 208 ~~L~~L~L~~~~l~-~l~~~~~~l~~L~~L~Ls~n~l~-~l~~~-l~~l~~L~~L~Ls~n~l~-~l~~~l~~-------- 275 (516)
++|++|++++|.++ .+|..|+.+++|++|++++|.+. .+|.. +..+++|++|++++|.++ .+|..+..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 56777777777776 55666777777777777777776 56544 677777777777777665 45544433
Q ss_pred -------------------CCCCcEEEeeCCCCC-CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCC
Q 010182 276 -------------------LDNLKILDVSGNKLS-ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNK 335 (516)
Q Consensus 276 -------------------l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 335 (516)
+++|++|++++|.++ .+|..+..+++|++|++++|.++......+..+++|+.|++++|.
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~ 453 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc
Confidence 345666666666555 556778888888888888888875544455568889999999888
Q ss_pred Cc-cccchhcCCCCCcEEEccCCCCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-Cchh
Q 010182 336 IR-FLPTSIGEMASLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPN 412 (516)
Q Consensus 336 l~-~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~ 412 (516)
+. .+|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|.+. ..+|.+++.+++|+.|+|++|+++ .+|.
T Consensus 454 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred ccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 87 677788888899999999998885 7888888999999999999765 467888899999999999999988 6788
Q ss_pred hhcCCCcccEEecccCCCCC
Q 010182 413 TFGRLDKLIKLNLEENPMVI 432 (516)
Q Consensus 413 ~l~~l~~L~~L~L~~N~l~~ 432 (516)
.+..+++|+.|++++|++.+
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp GGGGCTTCCEEECCSSEEES
T ss_pred HHcCCCCCCEEECCCCccCC
Confidence 89999999999999998873
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4.7e-28 Score=264.97 Aligned_cols=286 Identities=17% Similarity=0.274 Sum_probs=154.8
Q ss_pred CCccEEEeecCC-CCc--chHhhcCC------CCCcEEEeecCCCCCcch--hhcCCCCccEEEeeCCCCC-CcchhhcC
Q 010182 208 KSLEQVDLSSRG-LRF--LPEAFGRI------AGLRLMSLSNNHLEVIPD--SIAGLVNLEELNLASNLLE-TLPDSIGL 275 (516)
Q Consensus 208 ~~L~~L~L~~~~-l~~--l~~~~~~l------~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~-~l~~~l~~ 275 (516)
++|++|++++|. ++. +|..++.+ ++|++|++++|.++.+|. .++.+++|++|++++|.++ .+| .++.
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 566677777766 663 66655554 667777777776666666 6666667777777777666 666 5666
Q ss_pred CCCCcEEEeeCCCCCCCCcccccCCC-CcEEeCCCCCCCcCChhhhh-cCCCCcEEecCCCCCcc-ccchhc-------C
Q 010182 276 LDNLKILDVSGNKLSALPDSISHCRS-LVELDASFNRLAYLPTNIGH-ELVNLQKLLVPLNKIRF-LPTSIG-------E 345 (516)
Q Consensus 276 l~~L~~L~Ls~n~l~~l~~~l~~l~~-L~~L~L~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~-l~~~l~-------~ 345 (516)
+++|++|++++|.++.+|..+..+++ |++|++++|.++.+|..+.. .+++|+.|++++|.+.. .|..+. .
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~ 431 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCC
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhccccccccc
Confidence 66666666666666666666666666 66666666666655543321 12256666666665542 233333 4
Q ss_pred CCCCcEEEccCCCCCCcchh-hCCCCCCcEEEcccCCCCCCCcchhhcC--------CCCccEEeccCCCCCCchhhhc-
Q 010182 346 MASLRHLDAHFNELHGLPAT-IGKLTNLEILNVSSNFTDMKELPETFGE--------LTNLKELDLSNNQIHALPNTFG- 415 (516)
Q Consensus 346 l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~~~~~~l~~~l~~--------l~~L~~L~L~~n~i~~lp~~l~- 415 (516)
+.+|++|++++|.++.+|.. +..+++|+.|+|++|.+. .+|..... +++|+.|+|++|+|+.+|..+.
T Consensus 432 ~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~--~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 509 (636)
T 4eco_A 432 GINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT--EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509 (636)
T ss_dssp CCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS--BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGST
T ss_pred CCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC--CcCHHHhccccccccccCCccEEECcCCcCCccChhhhh
Confidence 44555566666655555443 233555555555555332 33332211 1155555555555555554444
Q ss_pred -CCCcccEEecccCCCCCCCHHHHhchhHHHHHH-H-----------hhhhhhHhHHHhhhcccccccccCCCCCCCCcc
Q 010182 416 -RLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTF-M-----------AKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW 482 (516)
Q Consensus 416 -~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~-~-----------~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~ 482 (516)
.+++|+.|+|++|.++.++..+.. ...++.+ + .......+...++++.++|++|+++ ..+..+.
T Consensus 510 ~~l~~L~~L~Ls~N~l~~ip~~~~~--l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~ 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSKFPTQPLN--SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSSCCCGGGG--CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC
T ss_pred ccCCCcCEEECCCCCCCCcChhhhc--CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh
Confidence 555555555555555544322211 0000000 0 0001112234456677777777773 3232222
Q ss_pred ccccccEEEccCCcccccc
Q 010182 483 LTRSTSWLKTVGENVSGIL 501 (516)
Q Consensus 483 ~~~~l~~l~l~~N~ls~~~ 501 (516)
++++.|++++|.++.+.
T Consensus 587 --~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 587 --PNISVLDIKDNPNISID 603 (636)
T ss_dssp --TTCCEEECCSCTTCEEE
T ss_pred --CcCCEEECcCCCCcccc
Confidence 56777777777666543
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=2.8e-27 Score=264.82 Aligned_cols=270 Identities=17% Similarity=0.202 Sum_probs=208.5
Q ss_pred CCccEEEeecCCCCcchH--hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCC-CcEEEe
Q 010182 208 KSLEQVDLSSRGLRFLPE--AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDN-LKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~--~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~-L~~L~L 284 (516)
++|+.|++++|.++.+|. .+..+++|+.|++++|.++.+| .++.+++|++|++++|.++.+|..+..+++ |++|++
T Consensus 548 ~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~L 626 (876)
T 4ecn_A 548 PKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626 (876)
T ss_dssp TTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEEC
T ss_pred CCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEEC
Confidence 467777777777777777 7777777777888777777777 777777788888887777777777777777 888888
Q ss_pred eCCCCCCCCcccccCCC--CcEEeCCCCCCCcCChhhh-----hcCCCCcEEecCCCCCccccchhc-CCCCCcEEEccC
Q 010182 285 SGNKLSALPDSISHCRS--LVELDASFNRLAYLPTNIG-----HELVNLQKLLVPLNKIRFLPTSIG-EMASLRHLDAHF 356 (516)
Q Consensus 285 s~n~l~~l~~~l~~l~~--L~~L~L~~n~l~~l~~~~~-----~~l~~L~~L~L~~n~l~~l~~~l~-~l~~L~~L~Ls~ 356 (516)
++|.++.+|..+..+.. |+.|++++|.++.....+. ..+++|+.|++++|.+..+|..+. .+++|+.|++++
T Consensus 627 s~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 627 SHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCS
T ss_pred cCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCC
Confidence 88877777766665543 7788888887754322211 124589999999999998888764 789999999999
Q ss_pred CCCCCcchhhCCC--------CCCcEEEcccCCCCCCCcchhhc--CCCCccEEeccCCCCCCchhhhcCCCcccEEecc
Q 010182 357 NELHGLPATIGKL--------TNLEILNVSSNFTDMKELPETFG--ELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE 426 (516)
Q Consensus 357 n~l~~l~~~l~~l--------~~L~~L~L~~n~~~~~~l~~~l~--~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 426 (516)
|.++.+|..+... ++|+.|+|++|.+. .+|..+. .+++|+.|+|++|+|+.+|..+..+++|+.|+|+
T Consensus 707 N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls 784 (876)
T 4ecn_A 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784 (876)
T ss_dssp CCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECC
T ss_pred CcCCccChHHhccccccccccCCccEEECCCCCCc--cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECC
Confidence 9999988755443 38999999999654 7888887 9999999999999999999899999999999998
Q ss_pred c------CCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 427 E------NPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 427 ~------N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
+ |.+....+. .+...++|+.|+|++|++ +..+..+. ++|+.|++++|++..+
T Consensus 785 ~N~~ls~N~l~~~ip~-------------------~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 785 HQRDAEGNRILRQWPT-------------------GITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp CCBCTTCCBCCCCCCT-------------------TGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred CCCCcccccccccChH-------------------HHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 7 444433221 223467889999999999 44444433 6899999999998776
Q ss_pred cC
Q 010182 501 LG 502 (516)
Q Consensus 501 ~~ 502 (516)
..
T Consensus 843 ~~ 844 (876)
T 4ecn_A 843 DV 844 (876)
T ss_dssp EC
T ss_pred Ch
Confidence 53
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.6e-26 Score=241.93 Aligned_cols=281 Identities=23% Similarity=0.306 Sum_probs=172.2
Q ss_pred CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
.++|++|++++|.++.++. +..+++|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 67 l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~ 143 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEE
T ss_pred hcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCC
Confidence 4678888888888887766 7788888888888888887765 7788888888888888887765 67777788887777
Q ss_pred CCCCCCCc--------------------ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCC
Q 010182 287 NKLSALPD--------------------SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEM 346 (516)
Q Consensus 287 n~l~~l~~--------------------~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l 346 (516)
|.+..++. .+..+++|++|++++|.++.++. +..+++|+.|++++|.+..++. ++.+
T Consensus 144 n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l 220 (466)
T 1o6v_A 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDITP-LGIL 220 (466)
T ss_dssp EEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECCSSCCCCCGG-GGGC
T ss_pred CccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh--hccCCCCCEEEecCCccccccc-cccc
Confidence 76665431 24455666667777776665543 3346666666666666665533 4555
Q ss_pred CCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecc
Q 010182 347 ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLE 426 (516)
Q Consensus 347 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~ 426 (516)
++|++|++++|.+++++ .+..+++|+.|++++|.+ ..++. +..+++|++|++++|.++.++. +..+++|+.|+++
T Consensus 221 ~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 295 (466)
T 1o6v_A 221 TNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQI--SNLAP-LSGLTKLTELKLGANQISNISP-LAGLTALTNLELN 295 (466)
T ss_dssp TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECC
T ss_pred CCCCEEECCCCCcccch-hhhcCCCCCEEECCCCcc--ccchh-hhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcC
Confidence 66666666666665553 345556666666666633 22222 5555556666666665555543 5555555555555
Q ss_pred cCCCCCCCHHHHhchhHHHH-HHHhhhhhh---HhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 427 ENPMVIPPVEVVKEGVGAVK-TFMAKRWLD---ILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 427 ~N~l~~~~~~~~~~~~~~~~-~~~~~~~l~---~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
+|.+...+. +.. +..++ ..+..+.+. .+...++++.+++++|++++. +.+...++++.|++++|++++..+
T Consensus 296 ~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 296 ENQLEDISP--ISN-LKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp SSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG
T ss_pred CCcccCchh--hcC-CCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch
Confidence 555554432 000 00000 000000000 022446677777887777765 455566778888888888887765
Q ss_pred C
Q 010182 503 G 503 (516)
Q Consensus 503 ~ 503 (516)
-
T Consensus 371 ~ 371 (466)
T 1o6v_A 371 L 371 (466)
T ss_dssp G
T ss_pred h
Confidence 3
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=2e-27 Score=258.44 Aligned_cols=273 Identities=19% Similarity=0.227 Sum_probs=156.7
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCC-Ccch-hhcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLE-TLPD-SIGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~-~l~~-~l~~l~~L~~L~L 284 (516)
++|++|++++|.++.+|..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+. .++. .+..+++|++|++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l 357 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEEC
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEEC
Confidence 445555555555555555555555555555555555544 334555555555555555544 3332 3455555666666
Q ss_pred eCCCCCCC---CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-c-chhcCCCCCcEEEccCCCC
Q 010182 285 SGNKLSAL---PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-P-TSIGEMASLRHLDAHFNEL 359 (516)
Q Consensus 285 s~n~l~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~-~~l~~l~~L~~L~Ls~n~l 359 (516)
++|.++.+ +..+..+++|++|++++|.+..++...+..+++|+.|++++|.+... + ..+..+++|++|++++|.+
T Consensus 358 ~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l 437 (606)
T 3t6q_A 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437 (606)
T ss_dssp CSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCC
T ss_pred CCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCcc
Confidence 65555533 34455566666666666665555444444566666666666665533 1 2355666666666666666
Q ss_pred CCc-chhhCCCCCCcEEEcccCCCCCCCc--chhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCH
Q 010182 360 HGL-PATIGKLTNLEILNVSSNFTDMKEL--PETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 360 ~~l-~~~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
+.. +..+..+++|++|++++|.+....+ +..+..+++|+.|++++|+++.+ |..+..+++|+.|+|++|.++..++
T Consensus 438 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 517 (606)
T 3t6q_A 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517 (606)
T ss_dssp BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGG
T ss_pred CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCCh
Confidence 553 4455666666666666665432111 23456666666666666666655 3566666666666666666664433
Q ss_pred HHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 436 EVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
..+ .....+ .+++++|++++..+..+...+.++.+++++|.+++.
T Consensus 518 ~~l-------------------~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 518 EAL-------------------SHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp GGG-------------------TTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred hHh-------------------Cccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 222 133445 677777777766555555667777788888777763
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=3.1e-27 Score=256.84 Aligned_cols=296 Identities=18% Similarity=0.165 Sum_probs=191.2
Q ss_pred hCCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEE
Q 010182 206 AGKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKIL 282 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L 282 (516)
....+++|++++|.++.+ +..|.++++|++|++++|.+..+ |..|.++++|++|++++|.++.+ |..|+.+++|++|
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 345788888888888877 45788888888888888888866 66788888888888888888865 5578888888888
Q ss_pred EeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCc--EEEccCCC
Q 010182 283 DVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLR--HLDAHFNE 358 (516)
Q Consensus 283 ~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~--~L~Ls~n~ 358 (516)
++++|.++.+ +..+..+++|++|++++|.++.++...+..+++|+.|++++|.+..+ +..++.+++|+ +|++++|.
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 8888888876 56677888888888888888776433333478888888888888765 44567777777 67777777
Q ss_pred CCCcchhhCCCC----------------------------------------------------CCcEEEcccCCCCCCC
Q 010182 359 LHGLPATIGKLT----------------------------------------------------NLEILNVSSNFTDMKE 386 (516)
Q Consensus 359 l~~l~~~l~~l~----------------------------------------------------~L~~L~L~~n~~~~~~ 386 (516)
+++++....... +|+.|++++|.+. .
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~--~ 268 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF--N 268 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS--S
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC--c
Confidence 665332111111 3444445544322 2
Q ss_pred c-chhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhh------hhHhHH
Q 010182 387 L-PETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRW------LDILLE 459 (516)
Q Consensus 387 l-~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~------l~~~~~ 459 (516)
+ +..++.+++|++|++++|+++.+|..+..+++|++|++++|.+...++..+..........+..+. ...+..
T Consensus 269 ~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 348 (606)
T 3t6q_A 269 ISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLEN 348 (606)
T ss_dssp CCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTT
T ss_pred cCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhc
Confidence 2 223555566666666666666666556666666666666666554433222211000000000000 011234
Q ss_pred HhhhcccccccccCCCCC--CCCccccccccEEEccCCccccccCC
Q 010182 460 EERRSMLKLEGNNNEGEQ--MPTGWLTRSTSWLKTVGENVSGILGG 503 (516)
Q Consensus 460 ~~~l~~l~L~~N~i~~~~--~~~~~~~~~l~~l~l~~N~ls~~~~~ 503 (516)
.++++.+++++|++++.. +..+...+.++.|++++|++++..+.
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 394 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTE 394 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTT
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHH
Confidence 466777888888877665 44556667788888888888776543
No 22
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=4.3e-26 Score=240.26 Aligned_cols=277 Identities=21% Similarity=0.263 Sum_probs=184.0
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch----------------
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD---------------- 271 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~---------------- 271 (516)
++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++.
T Consensus 90 ~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~ 167 (466)
T 1o6v_A 90 TKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQV 167 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESC
T ss_pred ccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcc
Confidence 667777777777776665 7777777777777777776644 6677777777777776655432
Q ss_pred ----hhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCC
Q 010182 272 ----SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMA 347 (516)
Q Consensus 272 ----~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~ 347 (516)
.+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+..++ .+..++
T Consensus 168 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~-~l~~l~ 243 (466)
T 1o6v_A 168 TDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG-TLASLT 243 (466)
T ss_dssp CCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-GGGGCT
T ss_pred cCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccch-hhhcCC
Confidence 2456677778888888777663 46777888888888887776654 334777777777777777653 466667
Q ss_pred CCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEeccc
Q 010182 348 SLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEE 427 (516)
Q Consensus 348 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~ 427 (516)
+|++|++++|.+++++. +..+++|+.|++++|.+ ..++. +..+++|+.|++++|+++.++. +..+++|+.|++++
T Consensus 244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l--~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQI--SNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYF 318 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCC--CCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCS
T ss_pred CCCEEECCCCccccchh-hhcCCCCCEEECCCCcc--Ccccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcC
Confidence 77777777777776644 66667777777777743 33333 5666667777777776666653 56666666666666
Q ss_pred CCCCCCCHHHHhchhHHHH-HHHhhhhh---hHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 428 NPMVIPPVEVVKEGVGAVK-TFMAKRWL---DILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 428 N~l~~~~~~~~~~~~~~~~-~~~~~~~l---~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
|.+.+.++ +.. +..++ ..+..+.+ ..+...++++.+++++|++++..+ ....+.+..|++++|.+++.
T Consensus 319 n~l~~~~~--~~~-l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 319 NNISDISP--VSS-LTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp SCCSCCGG--GGG-CTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CcCCCchh--hcc-CccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 66665543 111 00000 00111111 123455788999999999998765 66778899999999999984
No 23
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=2.3e-27 Score=236.99 Aligned_cols=245 Identities=26% Similarity=0.344 Sum_probs=211.8
Q ss_pred CCccEEEeecCCCC---cchHhhcCCCCCcEEEeec-CCCC-CcchhhcCCCCccEEEeeCCCCC-CcchhhcCCCCCcE
Q 010182 208 KSLEQVDLSSRGLR---FLPEAFGRIAGLRLMSLSN-NHLE-VIPDSIAGLVNLEELNLASNLLE-TLPDSIGLLDNLKI 281 (516)
Q Consensus 208 ~~L~~L~L~~~~l~---~l~~~~~~l~~L~~L~Ls~-n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~ 281 (516)
.+++.|+++++.++ .+|..+.++++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5888999999999999995 8777 67889999999999999999998 78888999999999
Q ss_pred EEeeCCCCC-CCCcccccCCCCcEEeCCCCCCC-cCChhhhhcCC-CCcEEecCCCCCc-cccchhcCCCCCcEEEccCC
Q 010182 282 LDVSGNKLS-ALPDSISHCRSLVELDASFNRLA-YLPTNIGHELV-NLQKLLVPLNKIR-FLPTSIGEMASLRHLDAHFN 357 (516)
Q Consensus 282 L~Ls~n~l~-~l~~~l~~l~~L~~L~L~~n~l~-~l~~~~~~~l~-~L~~L~L~~n~l~-~l~~~l~~l~~L~~L~Ls~n 357 (516)
|++++|.++ .+|..+..+++|++|++++|.++ .+|..+. .+. +|+.|++++|.+. .+|..+..+. |++|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999998 67889999999999999999998 6666655 466 9999999999998 6788888887 999999999
Q ss_pred CCCC-cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCCCH
Q 010182 358 ELHG-LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 358 ~l~~-l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.+++ .+..+..+++|+.|++++|.+. ..+..+..+++|++|+|++|+|+ .+|..+..+++|+.|+|++|++++..+
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip 285 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEEC--CBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCcee--eecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence 9986 6778999999999999999654 34445888999999999999999 778999999999999999999974322
Q ss_pred HHHhchhHHHHHHHhhhhhhHhHHHhhhccccccccc-CCCC
Q 010182 436 EVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNN-NEGE 476 (516)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~-i~~~ 476 (516)
.. ..+++++.+++++|. +.|.
T Consensus 286 ~~--------------------~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 286 QG--------------------GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp CS--------------------TTGGGSCGGGTCSSSEEEST
T ss_pred CC--------------------ccccccChHHhcCCCCccCC
Confidence 11 145677888999997 5443
No 24
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=8.8e-27 Score=239.72 Aligned_cols=267 Identities=21% Similarity=0.234 Sum_probs=219.6
Q ss_pred CCCccEEEeecCCCCcchHh-hcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
..+++.|+++++.++.+|.. |..+++|++|++++|.++.++ ..|..+++|++|++++|.++.++. .++.+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 37899999999999999875 788999999999999999885 489999999999999999998864 689999999999
Q ss_pred eeCCCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCC-------------
Q 010182 284 VSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL------------- 349 (516)
Q Consensus 284 Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L------------- 349 (516)
+++|.++.+|.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++ +..+++|
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeeccccccccc
Confidence 999999999876 588999999999999999998887778999999999999998663 3334444
Q ss_pred ------cEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccE
Q 010182 350 ------RHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIK 422 (516)
Q Consensus 350 ------~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~ 422 (516)
++|++++|.++.++.. ..++|+.|++++|.+. .. ..+..+++|++|++++|.++.+ |..+..+++|+.
T Consensus 202 ~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~--~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLT--DT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp ECCSSCSEEECCSSCCCEEECC--CCSSCCEEECCSSCCC--CC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCCCcceEEECCCCeeeecccc--ccccccEEECCCCCCc--cc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 5555555555554332 3467888999988554 33 4788899999999999999977 588999999999
Q ss_pred EecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182 423 LNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL 501 (516)
Q Consensus 423 L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~ 501 (516)
|++++|.++..+... ...++++.++|++|++++. ++.....+.++.|++++|++++..
T Consensus 277 L~L~~n~l~~~~~~~--------------------~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 277 LYISNNRLVALNLYG--------------------QPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp EECCSSCCCEEECSS--------------------SCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred EECCCCcCcccCccc--------------------CCCCCCCEEECCCCcceec-CccccccCcCCEEECCCCccceeC
Confidence 999999987653211 1356789999999999854 334556788999999999998864
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.94 E-value=4.7e-27 Score=255.48 Aligned_cols=106 Identities=31% Similarity=0.432 Sum_probs=61.5
Q ss_pred CCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L 284 (516)
++|++|++++|.++.+ |..|..+++|++|++++|.++.+ |..|+++++|++|++++|.++.++ ..++.+++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 4566666666666654 33456666666666666666655 555666666666666666665544 34555566666666
Q ss_pred eCCCCC--CCCcccccCCCCcEEeCCCCCCC
Q 010182 285 SGNKLS--ALPDSISHCRSLVELDASFNRLA 313 (516)
Q Consensus 285 s~n~l~--~l~~~l~~l~~L~~L~L~~n~l~ 313 (516)
++|.+. .+|..++++++|++|++++|.++
T Consensus 136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CSSCCCCCCCCGGGGTCTTCCEEECCSSCCC
T ss_pred CCCcccceechHhHhhcCCCCEEEccCCcce
Confidence 666555 24555555666666655555543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.1e-26 Score=243.63 Aligned_cols=271 Identities=23% Similarity=0.249 Sum_probs=209.8
Q ss_pred ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCC-Cc-chhhcCCCCCcEEEeeC
Q 010182 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLE-TL-PDSIGLLDNLKILDVSG 286 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~-~l-~~~l~~l~~L~~L~Ls~ 286 (516)
-+.+++++++++.+|. + .++|++|++++|.++.+ |..|+++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3468899999999987 3 38899999999999977 778999999999999999987 55 45789999999999999
Q ss_pred CCCCCC-CcccccCCCCcEEeCCCCCCCc--CChhhhhcCCCCcEEecCCCCCccc-cch-hcCCCCCcEEEccCCCCCC
Q 010182 287 NKLSAL-PDSISHCRSLVELDASFNRLAY--LPTNIGHELVNLQKLLVPLNKIRFL-PTS-IGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 287 n~l~~l-~~~l~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L~L~~n~l~~l-~~~-l~~l~~L~~L~Ls~n~l~~ 361 (516)
|.++.+ |..+..+++|++|++++|.++. .....+..+++|++|++++|.+..+ |.. +..+++|++|++++|.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 999976 7789999999999999999986 3333466799999999999999977 444 7899999999999999887
Q ss_pred c-chhhC----------------------------------CCCCCcEEEcccCCCCC----------------------
Q 010182 362 L-PATIG----------------------------------KLTNLEILNVSSNFTDM---------------------- 384 (516)
Q Consensus 362 l-~~~l~----------------------------------~l~~L~~L~L~~n~~~~---------------------- 384 (516)
+ +..+. .+++|++|++++|.+..
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 4 32222 23566777777664320
Q ss_pred ----------------------------------------CCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEE
Q 010182 385 ----------------------------------------KELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKL 423 (516)
Q Consensus 385 ----------------------------------------~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L 423 (516)
...+..++.+++|++|+|++|+++.+ |..+..+++|++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 328 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEE
Confidence 11234455566666666666666655 3566666666666
Q ss_pred ecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 424 NLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 424 ~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
+|++|.++..+...+ ....+++.++|++|++++..+..+...+.++.|++++|++++..+
T Consensus 329 ~Ls~N~l~~~~~~~~-------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 329 NLSQNFLGSIDSRMF-------------------ENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPD 388 (455)
T ss_dssp ECCSSCCCEECGGGG-------------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ECCCCccCCcChhHh-------------------cCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCH
Confidence 666666655443322 245788999999999998877788888999999999999998654
No 27
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.4e-27 Score=253.07 Aligned_cols=104 Identities=23% Similarity=0.210 Sum_probs=79.5
Q ss_pred CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
+++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|+++++|++|++++|.|+.+|.. .+++|++|+++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~ 98 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLS 98 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEecc
Confidence 67788888888887665 4677788888888888888766 66778888888888888888877765 67788888888
Q ss_pred CCCCCC--CCcccccCCCCcEEeCCCCCCC
Q 010182 286 GNKLSA--LPDSISHCRSLVELDASFNRLA 313 (516)
Q Consensus 286 ~n~l~~--l~~~l~~l~~L~~L~L~~n~l~ 313 (516)
+|.++. +|..++.+++|++|++++|.++
T Consensus 99 ~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~ 128 (520)
T 2z7x_B 99 FNAFDALPICKEFGNMSQLKFLGLSTTHLE 128 (520)
T ss_dssp SSCCSSCCCCGGGGGCTTCCEEEEEESSCC
T ss_pred CCccccccchhhhccCCcceEEEecCcccc
Confidence 887775 4567777777877777777665
No 28
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3e-26 Score=240.68 Aligned_cols=273 Identities=21% Similarity=0.217 Sum_probs=212.3
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
++|++|++++|.++.+| .+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|++|++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence 78999999999999887 6899999999999999999885 889999999999999999885 889999999999999
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCC-CCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLN-KIRFLPTSIGEMASLRHLDAHFNELHGLPATI 366 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l 366 (516)
.++.++ +..+++|++|++++|.++.++ +..+++|+.|++++| .+..+ .+..+++|++|++++|.+++++ +
T Consensus 117 ~l~~l~--~~~l~~L~~L~l~~N~l~~l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l 187 (457)
T 3bz5_A 117 KLTKLD--VSQNPLLTYLNCARNTLTEID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--V 187 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTSCCSCCC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--C
T ss_pred cCCeec--CCCCCcCCEEECCCCccceec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--c
Confidence 999885 888999999999999999875 346899999999999 55555 4778899999999999999986 7
Q ss_pred CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhH---
Q 010182 367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVG--- 443 (516)
Q Consensus 367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~--- 443 (516)
..+++|+.|++++|.+. .+ .++.+++|+.|++++|+++.+| +..+++|+.|++++|.++..+...+..-..
T Consensus 188 ~~l~~L~~L~l~~N~l~--~~--~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l 261 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNIT--KL--DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHC 261 (457)
T ss_dssp TTCTTCCEEECCSSCCS--CC--CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEEC
T ss_pred ccCCCCCEEECcCCcCC--ee--ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEec
Confidence 88899999999999654 33 3778899999999999999987 788899999999999998876432221000
Q ss_pred ---HHHH-HHhhhh-hhH--hHHHhhhcccccccccCCCCCCC--------CccccccccEEEccCCccccc
Q 010182 444 ---AVKT-FMAKRW-LDI--LLEEERRSMLKLEGNNNEGEQMP--------TGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 444 ---~~~~-~~~~~~-l~~--~~~~~~l~~l~L~~N~i~~~~~~--------~~~~~~~l~~l~l~~N~ls~~ 500 (516)
.+.. .+..+. ... .....+++.+++++|.+.+..+. .....+++..|++++|+++|.
T Consensus 262 ~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 262 IQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp TTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC
T ss_pred cCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc
Confidence 0000 000000 000 11236677777777765443221 133446778888888888885
No 29
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=2.2e-27 Score=235.88 Aligned_cols=223 Identities=28% Similarity=0.341 Sum_probs=122.9
Q ss_pred CCccEEEeecCCCCcchHh-hcCCCCCcEEEeecCCCCCc---chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEE
Q 010182 208 KSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVI---PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILD 283 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~n~l~~l---~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~ 283 (516)
+++++|++++|.++.+|.. |..+++|++|++++|.++.+ +..+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4555666666665555542 45556666666666655533 3444555566666666665555555555556666666
Q ss_pred eeCCCCCCCCc--ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCC
Q 010182 284 VSGNKLSALPD--SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNEL 359 (516)
Q Consensus 284 Ls~n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l 359 (516)
+++|.++.++. .+..+++|++|++++|.++......+..+++|++|++++|.+.. +|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 66665555432 45555566666666665555544444445566666666665553 445555555666666666655
Q ss_pred CCc-chhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCc-hhhhcCCC-cccEEecccCCCCC
Q 010182 360 HGL-PATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHAL-PNTFGRLD-KLIKLNLEENPMVI 432 (516)
Q Consensus 360 ~~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~-~L~~L~L~~N~l~~ 432 (516)
+++ +..+..+++|+.|++++|.+. .+ +..+..+++|+.|++++|+++.. |..+..++ +|+.|+|++|++..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCS--BCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCcCHHHhcCCCCCCEEECCCCccC--ccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 554 445555556666666665332 22 22445555666666666655543 24455553 56666666665543
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.4e-27 Score=253.68 Aligned_cols=289 Identities=16% Similarity=0.130 Sum_probs=185.0
Q ss_pred CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEe
Q 010182 207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDV 284 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L 284 (516)
.+++++|++++|.++.++ ..|..+++|++|++++|.++.+ |..|.++++|++|++++|.|+.+|.. .+++|++|++
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L 128 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL 128 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence 378999999999998776 4789999999999999999977 67789999999999999999988876 7899999999
Q ss_pred eCCCCCCCC--cccccCCCCcEEeCCCCCCCcCChhhhhcCCCC--cEEecCCCCC--c-cccchhcCC-----------
Q 010182 285 SGNKLSALP--DSISHCRSLVELDASFNRLAYLPTNIGHELVNL--QKLLVPLNKI--R-FLPTSIGEM----------- 346 (516)
Q Consensus 285 s~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L--~~L~L~~n~l--~-~l~~~l~~l----------- 346 (516)
++|.++.++ ..+.++++|++|++++|.++.... ..+.+| +.|++++|.+ . ..+..+..+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL---LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTT---GGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccCch---hhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 999998764 688889999999999988765322 223344 6666666655 1 111111110
Q ss_pred ----------------------------------------------------------------------CCCcEEEccC
Q 010182 347 ----------------------------------------------------------------------ASLRHLDAHF 356 (516)
Q Consensus 347 ----------------------------------------------------------------------~~L~~L~Ls~ 356 (516)
.+|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 1344444444
Q ss_pred CCCC-Ccchhh-----------------------------------------------------CCCCCCcEEEcccCCC
Q 010182 357 NELH-GLPATI-----------------------------------------------------GKLTNLEILNVSSNFT 382 (516)
Q Consensus 357 n~l~-~l~~~l-----------------------------------------------------~~l~~L~~L~L~~n~~ 382 (516)
|.++ .+|..+ ..+++|++|++++|.+
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 4443 222221 4556666667766654
Q ss_pred CCCCcchhhcCCCCccEEeccCCCCCCch---hhhcCCCcccEEecccCCCCC-CCHHHHhchhHHHHHHHhhhhhhH-h
Q 010182 383 DMKELPETFGELTNLKELDLSNNQIHALP---NTFGRLDKLIKLNLEENPMVI-PPVEVVKEGVGAVKTFMAKRWLDI-L 457 (516)
Q Consensus 383 ~~~~l~~~l~~l~~L~~L~L~~n~i~~lp---~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~~~~~~~~~~~l~~-~ 457 (516)
. ..+|..++.+++|+.|++++|+++.++ ..+..+++|+.|++++|.++. .+...+..........+..+.+.. .
T Consensus 366 ~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 444 (562)
T 3a79_B 366 T-DSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444 (562)
T ss_dssp C-TTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG
T ss_pred c-cchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch
Confidence 4 234556666667777777777666543 446666677777777776665 333222110000000011111110 0
Q ss_pred -HHH-hhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 458 -LEE-ERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 458 -~~~-~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
... .+++.++|++|+++. .++..+..+.++.|++++|+++++.+
T Consensus 445 ~~~l~~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~ 490 (562)
T 3a79_B 445 FRCLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPD 490 (562)
T ss_dssp GSSCCTTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCT
T ss_pred hhhhcCcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCH
Confidence 111 577888888888884 33444567788888888888886543
No 31
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=3.7e-27 Score=235.40 Aligned_cols=247 Identities=26% Similarity=0.299 Sum_probs=215.0
Q ss_pred CCCcEEEeecCCCC---CcchhhcCCCCccEEEeeC-CCCC-CcchhhcCCCCCcEEEeeCCCCC-CCCcccccCCCCcE
Q 010182 231 AGLRLMSLSNNHLE---VIPDSIAGLVNLEELNLAS-NLLE-TLPDSIGLLDNLKILDVSGNKLS-ALPDSISHCRSLVE 304 (516)
Q Consensus 231 ~~L~~L~Ls~n~l~---~l~~~l~~l~~L~~L~Ls~-n~l~-~l~~~l~~l~~L~~L~Ls~n~l~-~l~~~l~~l~~L~~ 304 (516)
.+++.|++++|.+. .+|..+..+++|++|++++ |.+. .+|..++.+++|++|++++|.++ .+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 4799999999999999995 8887 78889999999999999999998 78889999999999
Q ss_pred EeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc-cccchhcCCC-CCcEEEccCCCCCC-cchhhCCCCCCcEEEcccCC
Q 010182 305 LDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR-FLPTSIGEMA-SLRHLDAHFNELHG-LPATIGKLTNLEILNVSSNF 381 (516)
Q Consensus 305 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~l~~~l~~l~-~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L~~n~ 381 (516)
|++++|.++......+..+++|++|++++|.+. .+|..+..+. +|++|++++|.+++ +|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 999999998444444556999999999999998 8889999998 99999999999985 788888887 9999999997
Q ss_pred CCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHh
Q 010182 382 TDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEE 461 (516)
Q Consensus 382 ~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (516)
+. ...+..+..+++|+.|+|++|+++..+..+..+++|++|++++|.+++..+.. +...+
T Consensus 209 l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~-------------------l~~l~ 268 (313)
T 1ogq_A 209 LE-GDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQG-------------------LTQLK 268 (313)
T ss_dssp EE-ECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGG-------------------GGGCT
T ss_pred cc-CcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChH-------------------HhcCc
Confidence 65 35678899999999999999999977766889999999999999998443322 22457
Q ss_pred hhcccccccccCCCCCCCCccccccccEEEccCCc-ccc
Q 010182 462 RRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGEN-VSG 499 (516)
Q Consensus 462 ~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~-ls~ 499 (516)
+++.++|++|+++|..+.. ...+.+..+++++|. +.|
T Consensus 269 ~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp TCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred CCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence 8899999999999876654 677889999999998 665
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=3.2e-26 Score=245.88 Aligned_cols=152 Identities=22% Similarity=0.246 Sum_probs=98.5
Q ss_pred cCCCCCcEEEccCCCCCC-cc---hhhCCCCCCcEEEcccCCCCCCCcc---hhhcCCCCccEEeccCCCCCCchhhhcC
Q 010182 344 GEMASLRHLDAHFNELHG-LP---ATIGKLTNLEILNVSSNFTDMKELP---ETFGELTNLKELDLSNNQIHALPNTFGR 416 (516)
Q Consensus 344 ~~l~~L~~L~Ls~n~l~~-l~---~~l~~l~~L~~L~L~~n~~~~~~l~---~~l~~l~~L~~L~L~~n~i~~lp~~l~~ 416 (516)
..+++|++|++++|.+++ ++ ..+..+++|++|++++|.+ ..++ ..+..+++|++|++++|+++.+|..+..
T Consensus 331 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l--~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 408 (549)
T 2z81_A 331 QHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL--RSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQW 408 (549)
T ss_dssp HHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCC--CCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCC
T ss_pred hcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcc--cccccchhhhhcCCCCCEEECCCCCCccCChhhcc
Confidence 357788888888888877 32 2367778888888888844 4443 3477788888888888888888877778
Q ss_pred CCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHh-HHHhhhcccccccccCCCCCCCCccccccccEEEccCC
Q 010182 417 LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDIL-LEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGE 495 (516)
Q Consensus 417 l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N 495 (516)
+++|++|++++|.++..+..+.. .++ ...+..+.+..+ ...++++.++|++|+++. +|.....++++.|++++|
T Consensus 409 ~~~L~~L~Ls~N~l~~l~~~~~~-~L~--~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~l~~L~~L~Ls~N 483 (549)
T 2z81_A 409 PEKMRFLNLSSTGIRVVKTCIPQ-TLE--VLDVSNNNLDSFSLFLPRLQELYISRNKLKT--LPDASLFPVLLVMKISRN 483 (549)
T ss_dssp CTTCCEEECTTSCCSCCCTTSCT-TCS--EEECCSSCCSCCCCCCTTCCEEECCSSCCSS--CCCGGGCTTCCEEECCSS
T ss_pred cccccEEECCCCCcccccchhcC-Cce--EEECCCCChhhhcccCChhcEEECCCCccCc--CCCcccCccCCEEecCCC
Confidence 88888888888887765533211 000 000111111111 234567777777777773 344455667777777777
Q ss_pred ccccccC
Q 010182 496 NVSGILG 502 (516)
Q Consensus 496 ~ls~~~~ 502 (516)
++++..+
T Consensus 484 ~l~~~~~ 490 (549)
T 2z81_A 484 QLKSVPD 490 (549)
T ss_dssp CCCCCCT
T ss_pred ccCCcCH
Confidence 7777654
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=2.3e-26 Score=249.79 Aligned_cols=267 Identities=21% Similarity=0.237 Sum_probs=220.0
Q ss_pred CCCccEEEeecCCCCcchHh-hcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFLPEA-FGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~-~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
..+++.++++++.++.+|.. |..+++|++|++++|.++.++ ..|+.+++|++|+|++|.++.++. .|+.+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 36789999999999988874 788999999999999999875 589999999999999999998865 679999999999
Q ss_pred eeCCCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEE----------
Q 010182 284 VSGNKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHL---------- 352 (516)
Q Consensus 284 Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L---------- 352 (516)
|++|.++.+|.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+..++ +..+++|+.|
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc
Confidence 999999999876 588999999999999999998887778999999999999998764 3344455554
Q ss_pred ---------EccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccE
Q 010182 353 ---------DAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIK 422 (516)
Q Consensus 353 ---------~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~ 422 (516)
++++|.++.++..+ .++|+.|+|++|.+. + +..+..+++|+.|+|++|.++.+ |..+..+++|+.
T Consensus 208 ~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~--~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 282 (597)
T 3oja_B 208 AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT--D-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 282 (597)
T ss_dssp ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC--C-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC--C-ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence 44555544443322 357888888888554 3 36788899999999999999977 588999999999
Q ss_pred EecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182 423 LNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL 501 (516)
Q Consensus 423 L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~ 501 (516)
|+|++|.++.++... ..++.++.|+|++|.+++. ++.+...+++..|++++|.+++..
T Consensus 283 L~Ls~N~l~~l~~~~--------------------~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 283 LYISNNRLVALNLYG--------------------QPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp EECTTSCCCEEECSS--------------------SCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEECCSSCCCCCC
T ss_pred EECCCCCCCCCCccc--------------------ccCCCCcEEECCCCCCCcc-CcccccCCCCCEEECCCCCCCCcC
Confidence 999999998653211 1356789999999999953 445567789999999999998874
No 34
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=3.5e-26 Score=244.01 Aligned_cols=143 Identities=24% Similarity=0.278 Sum_probs=119.2
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNK 288 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~ 288 (516)
++|++++|+++.+|..+. ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|+.+++|++|++++|.
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 579999999999998665 89999999999999875 6899999999999999999987 6689999999999999999
Q ss_pred CCCCCcccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCccccchhcCCCCC--cEEEccCCCC
Q 010182 289 LSALPDSISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASL--RHLDAHFNEL 359 (516)
Q Consensus 289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L--~~L~Ls~n~l 359 (516)
++.+|.. .+++|++|++++|.++.++ +..+..+++|++|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 9999876 8999999999999998753 2345569999999999988764 234444444 5555555544
No 35
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-26 Score=227.23 Aligned_cols=271 Identities=23% Similarity=0.268 Sum_probs=226.5
Q ss_pred ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchh-hcCCCCccEEEeeCCCCCCc---chhhcCCCCCcEEEee
Q 010182 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDS-IAGLVNLEELNLASNLLETL---PDSIGLLDNLKILDVS 285 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l---~~~l~~l~~L~~L~Ls 285 (516)
-+.+++++++++.+|..+. ++|++|++++|.++.+|.. |.++++|++|++++|.++.+ +..+..+++|++|+++
T Consensus 9 ~~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CCEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 3579999999999987543 7899999999999999764 79999999999999999865 5677789999999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCC--
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHG-- 361 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~-- 361 (516)
+|.+..++..+..+++|++|++++|.++.++. ..+..+++|++|++++|.+... +..+..+++|++|++++|.+++
T Consensus 87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp SCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred CCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 99999998889999999999999999998876 5566799999999999999855 4568889999999999999986
Q ss_pred cchhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 362 LPATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 362 l~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
+|..+..+++|++|++++|.+. .+ +..+..+++|++|++++|+++.++ ..+..+++|+.|++++|.+....+..+.
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred chhHHhhCcCCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 7888999999999999999654 44 678899999999999999999886 5789999999999999999877554332
Q ss_pred chhHHHHHHHhhhhhhHhHHH-hhhcccccccccCCCCCCCCccc--cccccEEEccCCccccccCC
Q 010182 440 EGVGAVKTFMAKRWLDILLEE-ERRSMLKLEGNNNEGEQMPTGWL--TRSTSWLKTVGENVSGILGG 503 (516)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~-~~l~~l~L~~N~i~~~~~~~~~~--~~~l~~l~l~~N~ls~~~~~ 503 (516)
.. ..++.++|++|.+++.....++. ......+....+.+.+..|.
T Consensus 245 -------------------~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 245 -------------------HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp -------------------CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred -------------------hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 22 36889999999999875432221 12234455566777777665
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=7e-26 Score=227.69 Aligned_cols=204 Identities=30% Similarity=0.393 Sum_probs=172.1
Q ss_pred CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCC
Q 010182 229 RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS 308 (516)
Q Consensus 229 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~ 308 (516)
...+++.|++++|.++.+|..+..+++|++|++++|.++.+|..++.+++|++|++++|.++.+|..+..+++|++|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 35889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCcCChhhh--------hcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEccc
Q 010182 309 FNR-LAYLPTNIG--------HELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSS 379 (516)
Q Consensus 309 ~n~-l~~l~~~~~--------~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~ 379 (516)
+|. +..+|..+. .++++|++|++++|.++.+|..+..+++|++|++++|.++++|..+..+++|++|++++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 976 455665442 24788888888888888888888888888888888888888877788888888888888
Q ss_pred CCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCcccEEecccCCCCCC
Q 010182 380 NFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 380 n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
|.+. ..+|..++.+++|++|+|++|.+. .+|..+..+++|+.|+|++|++...
T Consensus 239 n~~~-~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 239 CTAL-RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp CTTC-CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred Ccch-hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 7654 566777888888888888887655 5677788888888888888776543
No 37
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.5e-26 Score=237.15 Aligned_cols=225 Identities=27% Similarity=0.436 Sum_probs=160.9
Q ss_pred CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
.++++.|+|++|.++.++ ..|..+++|++|+|++|.+..+ +..|.++++|++|+|++|.|+.++. .|..+++|++|+
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence 356777777777777664 4577777777777777777766 3567777777777777777777765 567777777777
Q ss_pred eeCCCCCCCCc-ccccCCCCcEEeCCC-CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182 284 VSGNKLSALPD-SISHCRSLVELDASF-NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
+++|.++.++. .+..+++|++|++++ +.++.++...+.++++|+.|++++|.++.+| .+..+++|++|++++|.+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCc
Confidence 77777776643 566677777777777 4466666666667777777777777777775 46677777777777777777
Q ss_pred c-chhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182 362 L-PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 362 l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
+ +..+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++|++...
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 294 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN 294 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCC-EECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred cChhhhccCccCCEEECCCCcee-EEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence 5 557777777777777777544 222455677777777777777777776 5567777777777777777543
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=1.2e-25 Score=242.32 Aligned_cols=271 Identities=21% Similarity=0.203 Sum_probs=204.0
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls 285 (516)
...+++++++++++.+|..+. ++|++|++++|.++.++ ..|.++++|++|++++|.|+.+ |..|..+++|++|+++
T Consensus 31 ~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp --CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 445899999999999998654 89999999999999885 6899999999999999999987 5689999999999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccccchhcCCCCC--cEEEccCCCC--C
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFLPTSIGEMASL--RHLDAHFNEL--H 360 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L--~~L~Ls~n~l--~ 360 (516)
+|.++.+|.. .+++|++|++++|.++.++. ..+.++++|++|++++|.+... .+..+++| ++|++++|.+ +
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeeccccccc
Confidence 9999999877 89999999999999998763 4566799999999999999853 45556666 9999999988 3
Q ss_pred C-cchhhCCC----------------------------------------------------------------------
Q 010182 361 G-LPATIGKL---------------------------------------------------------------------- 369 (516)
Q Consensus 361 ~-l~~~l~~l---------------------------------------------------------------------- 369 (516)
+ .|..+..+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 3 22222221
Q ss_pred -----------CCCcEEEcccCCCCCCCcchhh-----------------------------------------------
Q 010182 370 -----------TNLEILNVSSNFTDMKELPETF----------------------------------------------- 391 (516)
Q Consensus 370 -----------~~L~~L~L~~n~~~~~~l~~~l----------------------------------------------- 391 (516)
++|++|++++|.+. ..+|..+
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~-~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTIT-ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEEC-SCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhhhcccccEEEEeccEee-ccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCc
Confidence 15666666666433 1233222
Q ss_pred ------cCCCCccEEeccCCCCCC-chhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182 392 ------GELTNLKELDLSNNQIHA-LPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS 464 (516)
Q Consensus 392 ------~~l~~L~~L~L~~n~i~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 464 (516)
..+++|++|++++|+++. +|..+..+++|+.|++++|.++..+.... .+....+++
T Consensus 344 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----------------~~~~l~~L~ 406 (562)
T 3a79_B 344 IHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVAL-----------------MTKNMSSLE 406 (562)
T ss_dssp CCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHH-----------------TTTTCTTCC
T ss_pred ccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchh-----------------hhcCCCCCC
Confidence 567899999999999997 57889999999999999999987653211 112345566
Q ss_pred ccccccccCCCCCC-CCccccccccEEEccCCccccccC
Q 010182 465 MLKLEGNNNEGEQM-PTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 465 ~l~L~~N~i~~~~~-~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
.+++++|++++..+ ..+...+.++.|++++|++++..+
T Consensus 407 ~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 407 TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 67777777766322 223344555666666666655443
No 39
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.5e-25 Score=220.42 Aligned_cols=221 Identities=28% Similarity=0.349 Sum_probs=197.0
Q ss_pred ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCC
Q 010182 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n 287 (516)
-+.+++++++++.+|..+ .++|+.|++++|.++.++ ..|..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 368999999999998754 479999999999999885 5789999999999999999977 568899999999999999
Q ss_pred C-CCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch
Q 010182 288 K-LSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 288 ~-l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~ 364 (516)
. ++.+ +..+..+++|++|++++|.++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 8877 67788999999999999999998887777899999999999999988754 7889999999999999999765
Q ss_pred -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182 365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
.+..+++|+.|++++|.+. ...|..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|++...
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred HHhcCccccCEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 5889999999999999654 233778899999999999999999987 6799999999999999999754
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=8.1e-26 Score=237.22 Aligned_cols=225 Identities=24% Similarity=0.423 Sum_probs=166.3
Q ss_pred CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
.+++++|+|++|.++.+ +..|..+++|++|+|++|.++.+ +..|.++++|++|+|++|.++.++. .|..+++|++|+
T Consensus 74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 35677888888887766 44677788888888888887766 3577778888888888888877665 467778888888
Q ss_pred eeCCCCCCCCc-ccccCCCCcEEeCCC-CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182 284 VSGNKLSALPD-SISHCRSLVELDASF-NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
+++|.++.++. .+..+++|+.|++++ +.++.++...+.++++|+.|++++|++..+| .+..+++|++|++++|.+++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcc
Confidence 88888776654 566778888888877 4566777766667788888888888877774 46677778888888888777
Q ss_pred c-chhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182 362 L-PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 362 l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
+ +..+..+++|+.|++++|.+. ...+..+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++|++...
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred cCcccccCccCCCEEEeCCCcCc-eECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 4 567777888888888887554 222456777778888888888888776 5567778888888888877644
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=2.1e-26 Score=253.87 Aligned_cols=289 Identities=24% Similarity=0.269 Sum_probs=199.1
Q ss_pred CCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
..++++|++++|.++.++. .|.++++|++|++++|.++.+ |..++++++|++|++++|.++.+|. .|+.+++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 3678999999999887765 588889999999999988876 6678889999999999999988876 588899999999
Q ss_pred eeCCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-h--cCCCCCcEEEccCCCC
Q 010182 284 VSGNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-I--GEMASLRHLDAHFNEL 359 (516)
Q Consensus 284 Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l--~~l~~L~~L~Ls~n~l 359 (516)
+++|.++.++ ..+..+++|++|++++|.++..+...+..+++|++|++++|.++.++.. + ..+++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999888775 5688889999999999988877766666788899999999988866543 2 3457888888888888
Q ss_pred CCcc-hhhCCC---------------------------CCCcEEEcccCCCCCCCcchhhcCCC--CccEEeccCCCCCC
Q 010182 360 HGLP-ATIGKL---------------------------TNLEILNVSSNFTDMKELPETFGELT--NLKELDLSNNQIHA 409 (516)
Q Consensus 360 ~~l~-~~l~~l---------------------------~~L~~L~L~~n~~~~~~l~~~l~~l~--~L~~L~L~~n~i~~ 409 (516)
++++ ..+..+ ++|+.|++++|.+. ...+.++..++ +|++|++++|+++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~-~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCC-EECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccc-ccChhHhhccCcCCCCEEECCCCCcCc
Confidence 7743 333322 45666666666443 22244555553 37788888887776
Q ss_pred ch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhh---------hh-----HhHHHhhhcccccccccCC
Q 010182 410 LP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRW---------LD-----ILLEEERRSMLKLEGNNNE 474 (516)
Q Consensus 410 lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~---------l~-----~~~~~~~l~~l~L~~N~i~ 474 (516)
++ ..+..+++|++|++++|.+....+..+..........+..+. +. .+....+++.+++++|+++
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 64 667777778888887777765544333221000000000000 00 1223456777777777777
Q ss_pred CCCCCCccccccccEEEccCCc
Q 010182 475 GEQMPTGWLTRSTSWLKTVGEN 496 (516)
Q Consensus 475 ~~~~~~~~~~~~l~~l~l~~N~ 496 (516)
+.....+...++++.|++++|.
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCB
T ss_pred CCChhHhccccCCcEEECCCCc
Confidence 7655555555555555555554
No 42
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.93 E-value=4.5e-26 Score=244.69 Aligned_cols=174 Identities=22% Similarity=0.310 Sum_probs=132.2
Q ss_pred CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
.+++++|++++|.++.+ +..|..+++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .++.+++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 36799999999999876 457899999999999999998774 678999999999999999998776 488999999999
Q ss_pred eeCCCCCCC--CcccccCCCCcEEeCCCCC-CCcCChhhhhcCCCCcEEecCCCCCcc-ccchhcCCCCCcEEEccCCCC
Q 010182 284 VSGNKLSAL--PDSISHCRSLVELDASFNR-LAYLPTNIGHELVNLQKLLVPLNKIRF-LPTSIGEMASLRHLDAHFNEL 359 (516)
Q Consensus 284 Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~-l~~~l~~l~~L~~L~Ls~n~l 359 (516)
+++|.++.+ +..+..+++|++|++++|. ++.++...+..+++|++|++++|.+.. .|..+..+++|++|++++|.+
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 184 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES 184 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence 999998854 6778889999999999998 677776666678889999999888874 455565555555555555554
Q ss_pred CCcchhh-CCCCCCcEEEcccC
Q 010182 360 HGLPATI-GKLTNLEILNVSSN 380 (516)
Q Consensus 360 ~~l~~~l-~~l~~L~~L~L~~n 380 (516)
..++..+ ..+++|++|++++|
T Consensus 185 ~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 185 AFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp TTHHHHHHHSTTTBSEEEEESC
T ss_pred cccchhhHhhcccccEEEccCC
Confidence 4443322 23444444444444
No 43
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.6e-25 Score=239.94 Aligned_cols=241 Identities=28% Similarity=0.255 Sum_probs=155.0
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.|+.+|. .+++|++|++++|
T Consensus 61 ~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N 131 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN 131 (622)
T ss_dssp TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence 455555555555555544 34555555555555555544 44555555555555555544 3455555555555
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
.++.+|.. +++|++|++++|.++.++. ...+|+.|++++|.++.+| ..+++|+.|++++|.++++|..
T Consensus 132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~~-- 199 (622)
T 3g06_A 132 QLTSLPVL---PPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPTL-- 199 (622)
T ss_dssp CCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCC--
T ss_pred CCCcCCCC---CCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCCc--
Confidence 55555443 2556666666666655543 2455666666666666555 3346677777777777776543
Q ss_pred CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHH
Q 010182 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKT 447 (516)
Q Consensus 368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~ 447 (516)
.++|+.|++++|.+ ..+|. .+++|+.|+|++|+|+.+| ..+++|+.|+|++|.|+.++.
T Consensus 200 -~~~L~~L~L~~N~l--~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~------------ 258 (622)
T 3g06_A 200 -PSELYKLWAYNNRL--TSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM------------ 258 (622)
T ss_dssp -CTTCCEEECCSSCC--SSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC------------
T ss_pred -cchhhEEECcCCcc--cccCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc------------
Confidence 35677777777743 34443 2467888888888888887 456788888888888886654
Q ss_pred HHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 448 FMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 448 ~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
...+++.|+|++|+|+. .+..+...+++..|++++|.+++..+
T Consensus 259 -----------~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~ 301 (622)
T 3g06_A 259 -----------LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTL 301 (622)
T ss_dssp -----------CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred -----------ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCH
Confidence 12467889999999993 45567778899999999999988643
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.93 E-value=3.7e-26 Score=248.36 Aligned_cols=269 Identities=23% Similarity=0.218 Sum_probs=215.1
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
++++.|+++++.++.++ .+..+++|+.|++++|.++.+| .+ .+++|++|++++|..... ..+..+++|++|++++|
T Consensus 285 ~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp-~~-~l~~L~~L~l~~n~~~~~-~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFP-TL-DLPFLKSLTLTMNKGSIS-FKKVALPSLSYLDLSRN 360 (606)
T ss_dssp TTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCC-CC-CCSSCCEEEEESCSSCEE-CCCCCCTTCCEEECCSS
T ss_pred CCCCEEEecCccchhhh-hccccccCCEEEcccccCcccc-cC-CCCccceeeccCCcCccc-hhhccCCCCCEEECcCC
Confidence 78999999999999888 7888899999999999998888 55 888999999999854421 14668889999999999
Q ss_pred CCCCC---CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc--chhcCCCCCcEEEccCCCCCC-
Q 010182 288 KLSAL---PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP--TSIGEMASLRHLDAHFNELHG- 361 (516)
Q Consensus 288 ~l~~l---~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~--~~l~~l~~L~~L~Ls~n~l~~- 361 (516)
.++.+ +..+..+++|++|++++|.++.++.. +..+++|+.|++++|.+...+ ..+..+++|++|++++|.+++
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 439 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKID 439 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCcc
Confidence 88755 67788889999999999998887744 445889999999999888664 367888899999999998887
Q ss_pred cchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182 362 LPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKE 440 (516)
Q Consensus 362 l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 440 (516)
.|..+..+++|++|++++|.+....+|..++.+++|++|++++|+++.+ |..+..+++|+.|++++|+++...+..+.
T Consensus 440 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~- 518 (606)
T 3vq2_A 440 FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYN- 518 (606)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTT-
T ss_pred chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHcc-
Confidence 5677888899999999998655334677888899999999999999876 47788899999999999998876543332
Q ss_pred hhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccc-cccEEEccCCcccccc
Q 010182 441 GVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTR-STSWLKTVGENVSGIL 501 (516)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~-~l~~l~l~~N~ls~~~ 501 (516)
....++.++|++|+++..+ ..+...+ +++.+++++|.+++.-
T Consensus 519 ------------------~l~~L~~L~l~~N~l~~~p-~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 519 ------------------QLYSLSTLDCSFNRIETSK-GILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp ------------------TCTTCCEEECTTSCCCCEE-SCGGGSCTTCCEEECCSCCCCCSS
T ss_pred ------------------CCCcCCEEECCCCcCcccC-HhHhhhcccCcEEEccCCCcccCC
Confidence 3467888999999988433 3344444 5899999999888743
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=4.6e-26 Score=231.24 Aligned_cols=274 Identities=20% Similarity=0.168 Sum_probs=189.6
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~ 286 (516)
....++++++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.++ ..|..+++|++|++++
T Consensus 32 ~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 34457777888887777544 578888888888887754 6778888888888888887664 4677788888888888
Q ss_pred CCCCCCCcc-cccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCC-CCccc-cchhcCCCCCcEEEccCCCCCCc
Q 010182 287 NKLSALPDS-ISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLN-KIRFL-PTSIGEMASLRHLDAHFNELHGL 362 (516)
Q Consensus 287 n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n-~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l 362 (516)
|.++.++.. +..+++|++|++++|.++.++. ..+..+++|++|++++| .+..+ +..+..+++|++|++++|.++++
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 888877655 6777888888888888877776 55556788888888877 46655 34677777888888888887774
Q ss_pred -chhhCCCCCCcEEEcccCCCCCCCcchhh-cCCCCccEEeccCCCCCCch-h---hhcCCCcccEEecccCCCCCCCHH
Q 010182 363 -PATIGKLTNLEILNVSSNFTDMKELPETF-GELTNLKELDLSNNQIHALP-N---TFGRLDKLIKLNLEENPMVIPPVE 436 (516)
Q Consensus 363 -~~~l~~l~~L~~L~L~~n~~~~~~l~~~l-~~l~~L~~L~L~~n~i~~lp-~---~l~~l~~L~~L~L~~N~l~~~~~~ 436 (516)
+..+..+++|++|++++|.+ ..++..+ ..+++|+.|++++|.++.++ . .......++.++++++.+.+....
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQH--ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCS--TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred CHHHHhccccCCeecCCCCcc--ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 66777788888888888843 4555443 45778888888888877653 2 223456677777777776532111
Q ss_pred HHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182 437 VVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL 501 (516)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~ 501 (516)
. ....+...++++.+++++|+++......+...++++.|++++|.+++..
T Consensus 268 ~---------------l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 268 Q---------------VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp H---------------HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred h---------------hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 1 1122334567778888888887443322345677888888888777653
No 46
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.6e-26 Score=249.06 Aligned_cols=109 Identities=28% Similarity=0.431 Sum_probs=75.2
Q ss_pred CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L 284 (516)
++|++|++++|.++.++ ..|.++++|++|++++|.++.++ ..|.++++|++|++++|.++.++. .++.+++|++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 131 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEEC
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEec
Confidence 56777777777776654 35667777777777777776653 566777777777777777776654 5667777777777
Q ss_pred eCCCCCC--CCcccccCCCCcEEeCCCCCCCcCC
Q 010182 285 SGNKLSA--LPDSISHCRSLVELDASFNRLAYLP 316 (516)
Q Consensus 285 s~n~l~~--l~~~l~~l~~L~~L~L~~n~l~~l~ 316 (516)
++|.++. +|..+.++++|++|++++|.++.++
T Consensus 132 ~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~ 165 (570)
T 2z63_A 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165 (570)
T ss_dssp CSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCCccceecChhhhcccCCCCEEeCcCCccceec
Confidence 7777764 4667777777777777777665443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=1.5e-25 Score=243.89 Aligned_cols=131 Identities=27% Similarity=0.358 Sum_probs=101.8
Q ss_pred CCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~ 283 (516)
..++++|||++|.|+.++. .|..+++|++|+|++|.|+.++ .+|.++++|++|+|++|+|+.+|. .|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3578889999998888864 6888888999999988888874 468888888888888888888775 578888888888
Q ss_pred eeCCCCCCCCc-ccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCc
Q 010182 284 VSGNKLSALPD-SISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIR 337 (516)
Q Consensus 284 Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~ 337 (516)
+++|.++.++. .++++++|++|++++|.++.++ ...+..+++|++|++++|++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence 88888887754 4777888888888888876543 233345777777777766553
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=5e-26 Score=230.96 Aligned_cols=231 Identities=24% Similarity=0.358 Sum_probs=202.5
Q ss_pred hhCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcE
Q 010182 205 AAGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKI 281 (516)
Q Consensus 205 ~~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~ 281 (516)
...+++++|++++|.++.++. .|..+++|++|++++|.++.+ +..|.++++|++|++++|.++.++.. ++.+++|++
T Consensus 49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 128 (353)
T 2z80_A 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTF 128 (353)
T ss_dssp TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSE
T ss_pred cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCE
Confidence 344689999999999998876 799999999999999999987 56799999999999999999999875 889999999
Q ss_pred EEeeCCCCCCCCc--ccccCCCCcEEeCCCC-CCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCC
Q 010182 282 LDVSGNKLSALPD--SISHCRSLVELDASFN-RLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFN 357 (516)
Q Consensus 282 L~Ls~n~l~~l~~--~l~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n 357 (516)
|++++|.++.++. .+..+++|++|++++| .++.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|
T Consensus 129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred EECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 9999999999976 6888999999999999 58888777777899999999999999866 678899999999999999
Q ss_pred CCCCcchh-hCCCCCCcEEEcccCCCCCC------------------------------CcchhhcCCCCccEEeccCCC
Q 010182 358 ELHGLPAT-IGKLTNLEILNVSSNFTDMK------------------------------ELPETFGELTNLKELDLSNNQ 406 (516)
Q Consensus 358 ~l~~l~~~-l~~l~~L~~L~L~~n~~~~~------------------------------~l~~~l~~l~~L~~L~L~~n~ 406 (516)
.++.++.. +..+++|+.|++++|.+... .+|..+..+++|++|++++|+
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred ccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence 99887764 44588999999999966532 245667889999999999999
Q ss_pred CCCchhh-hcCCCcccEEecccCCCCCCCH
Q 010182 407 IHALPNT-FGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 407 i~~lp~~-l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
|+.+|.. +..+++|++|++++|++....+
T Consensus 289 l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 289 LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 9999855 5899999999999999987643
No 49
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=233.77 Aligned_cols=227 Identities=25% Similarity=0.431 Sum_probs=202.4
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~ 286 (516)
....+++++..++.+|..+. ++++.|+|++|.+..+ +..|.++++|++|+|++|.|+.++ ..|..+++|++|+|++
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCCEEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 46789999999999998654 7899999999999987 478999999999999999999876 5789999999999999
Q ss_pred CCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCC-CCCccccc-hhcCCCCCcEEEccCCCCCCcc
Q 010182 287 NKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL-NKIRFLPT-SIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 287 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
|.++.++. .+..+++|++|++++|.++.++...+..+++|+.|++++ +.+..++. .+..+++|++|++++|.++.+|
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 201 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc
Confidence 99998865 588899999999999999999998888899999999998 46666655 6788999999999999999997
Q ss_pred hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
. +..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|.|+..+...+.
T Consensus 202 ~-~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 276 (440)
T 3zyj_A 202 N-LTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276 (440)
T ss_dssp C-CTTCSSCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTS
T ss_pred c-cCCCcccCEEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhc
Confidence 4 788999999999999654 233678999999999999999999885 7899999999999999999998876654
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=2.4e-25 Score=233.61 Aligned_cols=227 Identities=25% Similarity=0.392 Sum_probs=201.8
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~ 286 (516)
....+++++.+++.+|..+. ++|++|+|++|.++.+ +..|.++++|++|+|++|.|+.++ ..|..+++|++|+|++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45789999999999997554 7899999999999977 678999999999999999999776 5889999999999999
Q ss_pred CCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCC-CCCccccc-hhcCCCCCcEEEccCCCCCCcc
Q 010182 287 NKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL-NKIRFLPT-SIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 287 n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
|.++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++ |.+..++. .+..+++|++|++++|.++++|
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP 212 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc
Confidence 999988654 78899999999999999999998888899999999998 56777765 5788999999999999999986
Q ss_pred hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHh
Q 010182 364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVK 439 (516)
Q Consensus 364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 439 (516)
.+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.+ +..+..+++|+.|+|++|.|+..+...+.
T Consensus 213 -~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 287 (452)
T 3zyi_A 213 -NLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287 (452)
T ss_dssp -CCTTCTTCCEEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSST
T ss_pred -cccccccccEEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhc
Confidence 4788999999999999654 33377899999999999999999987 47899999999999999999988876553
No 51
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=1.7e-25 Score=241.07 Aligned_cols=184 Identities=20% Similarity=0.177 Sum_probs=113.6
Q ss_pred CCCCcEEeCCCCCCCcCC--hhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcc--hhhCCCCCCcE
Q 010182 299 CRSLVELDASFNRLAYLP--TNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLP--ATIGKLTNLEI 374 (516)
Q Consensus 299 l~~L~~L~L~~n~l~~l~--~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~ 374 (516)
+++|++|++++|.++... ...+..+++|+.|++++|.+..++..+..+++|++|++++|.+++++ ..+..+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 344445555555444332 12223455566666666655555555556666666666666655532 24566666666
Q ss_pred EEcccCCCCCCCcchhhcCCCCccEEeccCCCCC--CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhh
Q 010182 375 LNVSSNFTDMKELPETFGELTNLKELDLSNNQIH--ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKR 452 (516)
Q Consensus 375 L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~--~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~ 452 (516)
|++++|.+. ...+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.++..++..+
T Consensus 426 L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------- 490 (570)
T 2z63_A 426 LDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-------------- 490 (570)
T ss_dssp EECTTSCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT--------------
T ss_pred EeCcCCccc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh--------------
Confidence 666666443 233555666777777777777765 356667777777777777777765533222
Q ss_pred hhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccC
Q 010182 453 WLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILG 502 (516)
Q Consensus 453 ~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~ 502 (516)
...++++.+++++|++++..+..+...++++.+++++|.++|..+
T Consensus 491 -----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 491 -----NSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp -----TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred -----hcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 234667888888888887766666667788888888888887654
No 52
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=3e-25 Score=250.52 Aligned_cols=275 Identities=23% Similarity=0.196 Sum_probs=191.9
Q ss_pred CCCccEEEeecCCCCcc-hHhhcCCCCCcEEEeecCC-CCCc-chhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEE
Q 010182 207 GKSLEQVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNH-LEVI-PDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKIL 282 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~-l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L 282 (516)
.+++++|+|++|.++.+ +..|..+++|++|++++|. +..+ |..|.++++|++|+|++|.++.+ |..|+.+++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 36788889988888866 4568888888888888884 4456 66788888888888888888866 6678888888888
Q ss_pred EeeCCCCCC-CCcc--cccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccc-cchhcCC--CC-------
Q 010182 283 DVSGNKLSA-LPDS--ISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFL-PTSIGEM--AS------- 348 (516)
Q Consensus 283 ~Ls~n~l~~-l~~~--l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l--~~------- 348 (516)
+|++|.++. ++.. +.++++|++|++++|.++.+.. ..+.++++|++|++++|.+..+ +..+..+ ++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 888888874 3443 7788888888888888876643 3455688888888888877533 2233222 23
Q ss_pred -----------------------CcEEEccCCCCCC-cchhh------------------------------------CC
Q 010182 349 -----------------------LRHLDAHFNELHG-LPATI------------------------------------GK 368 (516)
Q Consensus 349 -----------------------L~~L~Ls~n~l~~-l~~~l------------------------------------~~ 368 (516)
|++|++++|.++. ++..+ ..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 5666666664432 11111 01
Q ss_pred --CCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182 369 --LTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV 445 (516)
Q Consensus 369 --l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 445 (516)
.++|+.|++++|.+. ...+..+..+++|+.|+|++|+|+.+ |..+..+++|++|+|++|.++......+
T Consensus 263 l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~------- 334 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNF------- 334 (844)
T ss_dssp TTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSC-------
T ss_pred cccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHh-------
Confidence 245666777666443 22345566777777777777777766 3567777777777777777765543322
Q ss_pred HHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCcccccc
Q 010182 446 KTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGIL 501 (516)
Q Consensus 446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~ 501 (516)
...++++.+++++|++++.....+...++++.|++++|.++++.
T Consensus 335 ------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~ 378 (844)
T 3j0a_A 335 ------------YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378 (844)
T ss_dssp ------------SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS
T ss_pred ------------cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc
Confidence 23467788899999888777667777888899999999888754
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=4e-25 Score=249.45 Aligned_cols=269 Identities=26% Similarity=0.298 Sum_probs=203.8
Q ss_pred CCCccEEEeecCC-CCcc-hHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCC-cchh--hcCCCCCc
Q 010182 207 GKSLEQVDLSSRG-LRFL-PEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLET-LPDS--IGLLDNLK 280 (516)
Q Consensus 207 ~~~L~~L~L~~~~-l~~l-~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~-l~~~--l~~l~~L~ 280 (516)
.++|++|++++|. +..+ |..|.++++|++|+|++|.+..+ |..|+++++|++|+|++|.++. ++.. ++.+++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 3678888888884 3455 56788888888888888888866 7788888888888888888874 4443 77888888
Q ss_pred EEEeeCCCCCCC--CcccccCCCCcEEeCCCCCCCcCChhhhhcC--C------------------------------CC
Q 010182 281 ILDVSGNKLSAL--PDSISHCRSLVELDASFNRLAYLPTNIGHEL--V------------------------------NL 326 (516)
Q Consensus 281 ~L~Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l--~------------------------------~L 326 (516)
+|++++|.++.+ +..++++++|++|++++|.++.+....+..+ + +|
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 888888888765 2467888888888888887765433222111 1 27
Q ss_pred cEEecCCCCCc-cccchh------------------------------------cC--CCCCcEEEccCCCCCCc-chhh
Q 010182 327 QKLLVPLNKIR-FLPTSI------------------------------------GE--MASLRHLDAHFNELHGL-PATI 366 (516)
Q Consensus 327 ~~L~L~~n~l~-~l~~~l------------------------------------~~--l~~L~~L~Ls~n~l~~l-~~~l 366 (516)
+.|++++|.+. ..+..+ .. .++|+.|++++|.++++ +..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 77777777544 111111 11 26799999999999885 6678
Q ss_pred CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHH
Q 010182 367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAV 445 (516)
Q Consensus 367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~ 445 (516)
..+++|+.|+|++|.+. ...+..+..+++|++|+|++|.++.+ |..+..+++|+.|++++|.+...+...+.
T Consensus 287 ~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~------ 359 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFK------ 359 (844)
T ss_dssp SSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSC------
T ss_pred hcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhc------
Confidence 99999999999999664 33356789999999999999999987 58899999999999999999887654332
Q ss_pred HHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccc
Q 010182 446 KTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 446 ~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
..++++.|+|++|.+++... .+++..+++++|+++..
T Consensus 360 -------------~l~~L~~L~Ls~N~l~~i~~-----~~~L~~L~l~~N~l~~l 396 (844)
T 3j0a_A 360 -------------FLEKLQTLDLRDNALTTIHF-----IPSIPDIFLSGNKLVTL 396 (844)
T ss_dssp -------------SCCCCCEEEEETCCSCCCSS-----CCSCSEEEEESCCCCCC
T ss_pred -------------CCCCCCEEECCCCCCCcccC-----CCCcchhccCCCCcccc
Confidence 35678999999999986532 55677778888777754
No 54
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.92 E-value=2.2e-24 Score=237.67 Aligned_cols=54 Identities=30% Similarity=0.488 Sum_probs=30.3
Q ss_pred CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEe
Q 010182 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNL 261 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L 261 (516)
++|+.|++++|.++.++ ..|..+++|++|++++|.+..+ +..+.++++|++|++
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 303 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL 303 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEec
Confidence 44777777777766543 3566667777777777666533 333333333333333
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=1.9e-24 Score=226.82 Aligned_cols=157 Identities=28% Similarity=0.394 Sum_probs=90.9
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
.+|++|++++|.++.++.. .++|++|++++|.++.+| .++++++|++|++++|.++.+|..+ .+|++|++++|
T Consensus 111 ~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n 183 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNN 183 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSS
T ss_pred CCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCC
Confidence 3455555555555544321 146677777777666665 4666667777777777666665432 36666666666
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
.++.+| .+..+++|++|++++|.++.++.. ..+|+.|++++|.+..+| .++.+++|++|++++|.++++|..
T Consensus 184 ~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----~~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~~-- 255 (454)
T 1jl5_A 184 QLEELP-ELQNLPFLTAIYADNNSLKKLPDL----PLSLESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDL-- 255 (454)
T ss_dssp CCSSCC-CCTTCTTCCEEECCSSCCSSCCCC----CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCSC--
T ss_pred cCCcCc-cccCCCCCCEEECCCCcCCcCCCC----cCcccEEECcCCcCCccc-ccCCCCCCCEEECCCCcCCccccc--
Confidence 666665 466666666666666666655432 245666666666665555 255555666666666655555432
Q ss_pred CCCCCcEEEcccC
Q 010182 368 KLTNLEILNVSSN 380 (516)
Q Consensus 368 ~l~~L~~L~L~~n 380 (516)
.++|+.|++++|
T Consensus 256 -~~~L~~L~l~~N 267 (454)
T 1jl5_A 256 -PPSLEALNVRDN 267 (454)
T ss_dssp -CTTCCEEECCSS
T ss_pred -ccccCEEECCCC
Confidence 244455555544
No 56
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.9e-24 Score=225.62 Aligned_cols=212 Identities=23% Similarity=0.238 Sum_probs=184.4
Q ss_pred hhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEE
Q 010182 226 AFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305 (516)
Q Consensus 226 ~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L 305 (516)
.++++++|++|++++|.++.+| .+..+++|++|++++|.++.++ ++.+++|++|++++|.++.++ ++.+++|++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred ChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 4677899999999999999886 7999999999999999999986 889999999999999999885 8899999999
Q ss_pred eCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCC-CCCCcchhhCCCCCCcEEEcccCCCCC
Q 010182 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN-ELHGLPATIGKLTNLEILNVSSNFTDM 384 (516)
Q Consensus 306 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n-~l~~l~~~l~~l~~L~~L~L~~n~~~~ 384 (516)
++++|.++.++ +..+++|++|++++|.++.++ ++.+++|++|++++| .+..+ .+..+++|+.|++++|.+
T Consensus 112 ~L~~N~l~~l~---~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-- 182 (457)
T 3bz5_A 112 NCDTNKLTKLD---VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-- 182 (457)
T ss_dssp ECCSSCCSCCC---CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC--
T ss_pred ECCCCcCCeec---CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc--
Confidence 99999999886 456999999999999999874 888999999999999 45556 477899999999999955
Q ss_pred CCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182 385 KELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS 464 (516)
Q Consensus 385 ~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 464 (516)
..+| ++.+++|+.|++++|+++.++ +..+++|+.|++++|.++.++. . ..++++
T Consensus 183 ~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip~---~-------------------~l~~L~ 236 (457)
T 3bz5_A 183 TELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDV---T-------------------PLTQLT 236 (457)
T ss_dssp CCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCC---T-------------------TCTTCS
T ss_pred ceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccCc---c-------------------ccCCCC
Confidence 4565 788999999999999999984 8889999999999999998751 1 234566
Q ss_pred ccccccccCCCCC
Q 010182 465 MLKLEGNNNEGEQ 477 (516)
Q Consensus 465 ~l~L~~N~i~~~~ 477 (516)
.+++++|++++..
T Consensus 237 ~L~l~~N~l~~~~ 249 (457)
T 3bz5_A 237 YFDCSVNPLTELD 249 (457)
T ss_dssp EEECCSSCCSCCC
T ss_pred EEEeeCCcCCCcC
Confidence 7777777777654
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=2.9e-25 Score=222.03 Aligned_cols=215 Identities=20% Similarity=0.263 Sum_probs=190.0
Q ss_pred CCCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 207 GKSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
.++|++|++++|.++.++ ..|..+++|++|++++|.++.+++ +..+++|++|++++|.++.++. .++|++|+++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~ 107 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence 368999999999999775 579999999999999999997755 8999999999999999987763 4899999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chh-cCCCCCcEEEccCCCCCCcc
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSI-GEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l-~~l~~L~~L~Ls~n~l~~l~ 363 (516)
+|.++.++.. .+++|++|++++|.++.++...+..+++|+.|++++|.+..++ ..+ ..+++|++|++++|.++.++
T Consensus 108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 185 (317)
T 3o53_A 108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK 185 (317)
T ss_dssp SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence 9999977543 4788999999999999988877778999999999999999764 444 47899999999999999986
Q ss_pred hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182 364 ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 364 ~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~ 431 (516)
.. ..+++|++|++++|. +..++..+..+++|+.|++++|+|+.+|..+..+++|+.|++++|++.
T Consensus 186 ~~-~~l~~L~~L~Ls~N~--l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 186 GQ-VVFAKLKTLDLSSNK--LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CC-CCCTTCCEEECCSSC--CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred cc-cccccCCEEECCCCc--CCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCcc
Confidence 53 458999999999995 457777899999999999999999999988999999999999999997
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=4e-24 Score=224.29 Aligned_cols=183 Identities=33% Similarity=0.407 Sum_probs=95.9
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
+++++|++++|.++.+|.. +++|++|++++|.++.++.. .++|++|++++|.++.+| .++.+++|++|++++|
T Consensus 91 ~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSS
T ss_pred CCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCC
Confidence 3455566655555555432 25556666666655554321 145666666666665555 3555666666666666
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
.++.+|..+ .+|++|++++|.++.++. +..+++|+.|++++|.+..+|... .+|++|++++|.++.+|. +.
T Consensus 164 ~l~~lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~ 234 (454)
T 1jl5_A 164 SLKKLPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQ 234 (454)
T ss_dssp CCSCCCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CT
T ss_pred cCcccCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cC
Confidence 555554432 355666666666555542 234556666666666555544322 355666666666555553 55
Q ss_pred CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411 (516)
Q Consensus 368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp 411 (516)
.+++|++|++++|.+ ..+|.. +++|+.|++++|+++.+|
T Consensus 235 ~l~~L~~L~l~~N~l--~~l~~~---~~~L~~L~l~~N~l~~l~ 273 (454)
T 1jl5_A 235 NLPFLTTIYADNNLL--KTLPDL---PPSLEALNVRDNYLTDLP 273 (454)
T ss_dssp TCTTCCEEECCSSCC--SSCCSC---CTTCCEEECCSSCCSCCC
T ss_pred CCCCCCEEECCCCcC--Cccccc---ccccCEEECCCCcccccC
Confidence 555666666666533 233321 234444444444444433
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.92 E-value=1.4e-24 Score=213.48 Aligned_cols=247 Identities=25% Similarity=0.264 Sum_probs=209.9
Q ss_pred CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCC
Q 010182 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFN 310 (516)
Q Consensus 233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n 310 (516)
-+.++.+++.++.+|..+ .++|++|++++|.++.++. .|..+++|++|++++|.++.+ +..+..+++|++|++++|
T Consensus 13 ~~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 13 KVTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp SCEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred CeEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 478999999999998755 4699999999999998874 689999999999999999977 678899999999999999
Q ss_pred C-CCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCc
Q 010182 311 R-LAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKEL 387 (516)
Q Consensus 311 ~-l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l 387 (516)
. ++.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|++|++++|.+ ..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l--~~~ 168 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI--SSV 168 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC--CEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcc--ccc
Confidence 7 9988777777899999999999999977 5568889999999999999999765 588999999999999954 455
Q ss_pred ch-hhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcc
Q 010182 388 PE-TFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSM 465 (516)
Q Consensus 388 ~~-~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 465 (516)
+. .+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.++..+...+. ..++++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------~l~~L~~ 229 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA-------------------PLRALQY 229 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT-------------------TCTTCCE
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc-------------------cCcccCE
Confidence 54 588999999999999999987 68999999999999999999988776543 3567889
Q ss_pred cccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182 466 LKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG 503 (516)
Q Consensus 466 l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~ 503 (516)
+++++|.+.+..... |....+..+....|.+.+..|.
T Consensus 230 L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~ 266 (285)
T 1ozn_A 230 LRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQ 266 (285)
T ss_dssp EECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESG
T ss_pred EeccCCCccCCCCcH-HHHHHHHhcccccCccccCCch
Confidence 999999999875543 2223345556777888877665
No 60
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.1e-25 Score=224.71 Aligned_cols=220 Identities=20% Similarity=0.154 Sum_probs=113.1
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCC--Ccchhhc-------CCCCccEEEeeCCCCC-Ccchhh--cCC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLE--VIPDSIA-------GLVNLEELNLASNLLE-TLPDSI--GLL 276 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~--~l~~~l~-------~l~~L~~L~Ls~n~l~-~l~~~l--~~l 276 (516)
+|+.|++++|.+ .+|..+... |+.|++++|.+. .++..+. ++++|++|++++|.++ .+|..+ ..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l 120 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG 120 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred CceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence 344455555555 445443322 555555555553 2333333 4555666666666555 344433 555
Q ss_pred CCCcEEEeeCCCCCCCCcccccC-----CCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc---ccchh--cCC
Q 010182 277 DNLKILDVSGNKLSALPDSISHC-----RSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF---LPTSI--GEM 346 (516)
Q Consensus 277 ~~L~~L~Ls~n~l~~l~~~l~~l-----~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~---l~~~l--~~l 346 (516)
++|++|++++|.++.+|..+..+ ++|++|++++|.++.++...+..+++|++|++++|++.. ++..+ ..+
T Consensus 121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l 200 (312)
T 1wwl_A 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKF 200 (312)
T ss_dssp CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSC
T ss_pred CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccC
Confidence 56666666666555555444444 556666666666555554444455566666666655432 22222 455
Q ss_pred CCCcEEEccCCCCCCcc----hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccE
Q 010182 347 ASLRHLDAHFNELHGLP----ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK 422 (516)
Q Consensus 347 ~~L~~L~Ls~n~l~~l~----~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 422 (516)
++|++|++++|.++.++ ..+..+++|+.|++++|.+....-...+..+++|++|+|++|+|+.+|..+. ++|++
T Consensus 201 ~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~ 278 (312)
T 1wwl_A 201 PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSV 278 (312)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEE
T ss_pred CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCceE
Confidence 55666666666555422 1223455566666666543321101233445556666666666665554443 55666
Q ss_pred EecccCCCCCC
Q 010182 423 LNLEENPMVIP 433 (516)
Q Consensus 423 L~L~~N~l~~~ 433 (516)
|++++|+|+..
T Consensus 279 L~Ls~N~l~~~ 289 (312)
T 1wwl_A 279 LDLSYNRLDRN 289 (312)
T ss_dssp EECCSSCCCSC
T ss_pred EECCCCCCCCC
Confidence 66666655544
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1e-24 Score=217.56 Aligned_cols=219 Identities=22% Similarity=0.249 Sum_probs=184.4
Q ss_pred ccEEEeecCCCC--cchHhhc-------CCCCCcEEEeecCCCC-Ccchhh--cCCCCccEEEeeCCCCCCcchhhcCC-
Q 010182 210 LEQVDLSSRGLR--FLPEAFG-------RIAGLRLMSLSNNHLE-VIPDSI--AGLVNLEELNLASNLLETLPDSIGLL- 276 (516)
Q Consensus 210 L~~L~L~~~~l~--~l~~~~~-------~l~~L~~L~Ls~n~l~-~l~~~l--~~l~~L~~L~Ls~n~l~~l~~~l~~l- 276 (516)
++.|++++|.++ .++..+. .+++|++|++++|.++ .+|..+ ..+++|++|++++|.++.+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 667788888775 3555444 7899999999999998 567766 89999999999999999888777766
Q ss_pred ----CCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCCCcC---Chh-hhhcCCCCcEEecCCCCCcccc---ch-h
Q 010182 277 ----DNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAYL---PTN-IGHELVNLQKLLVPLNKIRFLP---TS-I 343 (516)
Q Consensus 277 ----~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l---~~~-~~~~l~~L~~L~L~~n~l~~l~---~~-l 343 (516)
++|++|++++|.++.++ ..+..+++|++|++++|.+... +.. .+..+++|++|++++|.++.++ .. +
T Consensus 145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 224 (312)
T 1wwl_A 145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA 224 (312)
T ss_dssp TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence 99999999999999886 7889999999999999997542 222 2356899999999999998543 23 3
Q ss_pred cCCCCCcEEEccCCCCCCcc--hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCccc
Q 010182 344 GEMASLRHLDAHFNELHGLP--ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLI 421 (516)
Q Consensus 344 ~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~ 421 (516)
..+++|++|++++|.+++.+ ..+..+++|++|++++|.+. .+|..+. ++|++|+|++|+|+.+|. +..+++|+
T Consensus 225 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~ 299 (312)
T 1wwl_A 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVG 299 (312)
T ss_dssp HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEE
T ss_pred hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCC
Confidence 57799999999999999854 45667899999999999654 7787766 899999999999999986 89999999
Q ss_pred EEecccCCCCCC
Q 010182 422 KLNLEENPMVIP 433 (516)
Q Consensus 422 ~L~L~~N~l~~~ 433 (516)
+|++++|++++.
T Consensus 300 ~L~L~~N~l~~~ 311 (312)
T 1wwl_A 300 NLSLKGNPFLDS 311 (312)
T ss_dssp EEECTTCTTTCC
T ss_pred EEeccCCCCCCC
Confidence 999999999865
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=2.3e-24 Score=228.28 Aligned_cols=214 Identities=21% Similarity=0.256 Sum_probs=190.3
Q ss_pred CCccEEEeecCCCCcch-HhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 208 KSLEQVDLSSRGLRFLP-EAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~-~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
++|++|+|++|.++.++ ..|..+++|++|+|++|.++.+++ +..+++|++|+|++|.|+.++. .++|++|++++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 48999999999999775 589999999999999999997655 8999999999999999988764 38999999999
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhc-CCCCCcEEEccCCCCCCcch
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIG-EMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~-~l~~L~~L~Ls~n~l~~l~~ 364 (516)
|.++.++.. .+++|+.|++++|.++.++...+..+++|+.|++++|.+..+ |..+. .+++|++|++++|.+++++.
T Consensus 109 N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~ 186 (487)
T 3oja_A 109 NNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG 186 (487)
T ss_dssp SCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred CcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence 999987543 468999999999999988777777799999999999999964 55564 78999999999999999855
Q ss_pred hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCC
Q 010182 365 TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 365 ~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~ 431 (516)
...+++|+.|+|++|. +.++|..+..+++|+.|+|++|.|+.+|..+..+++|+.|++++|++.
T Consensus 187 -~~~l~~L~~L~Ls~N~--l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 -QVVFAKLKTLDLSSNK--LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CCCCTTCCEEECCSSC--CCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBC
T ss_pred -cccCCCCCEEECCCCC--CCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCc
Confidence 4468999999999995 457778899999999999999999999999999999999999999997
No 63
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.91 E-value=5.2e-24 Score=231.84 Aligned_cols=149 Identities=26% Similarity=0.272 Sum_probs=133.2
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK 288 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~ 288 (516)
.+.++++.+++.+|..+. +++++|+|++|.|+.++ .+|.++++|++|+|++|.|+.+++ +|..+++|++|+|++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 467888889999997653 58999999999999985 589999999999999999998865 78999999999999999
Q ss_pred CCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCCCC
Q 010182 289 LSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 289 l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
|+.+|. .|.++++|++|++++|.++.++...+.++++|++|++++|.+.. +|..++.+++|++|++++|.+++
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 998875 57899999999999999999998888889999999999999984 46778889999999999887754
No 64
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=1e-23 Score=206.35 Aligned_cols=220 Identities=26% Similarity=0.301 Sum_probs=187.7
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK 288 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~ 288 (516)
..+++.+..+..+|..+. ++|++|++++|.++.++. .|.++++|++|++++|.++.++. .+..+++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 357778888888887654 689999999999998855 88999999999999999998765 78899999999999999
Q ss_pred CCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCCCCcc-h
Q 010182 289 LSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHGLP-A 364 (516)
Q Consensus 289 l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~l~-~ 364 (516)
++.++ ..+..+++|++|++++|.++.++...+..+++|++|++++|.+.. +|..+..+++|++|++++|.+++++ .
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 99775 678889999999999999998887667779999999999999986 6788999999999999999999864 4
Q ss_pred hhCCCCCCc----EEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182 365 TIGKLTNLE----ILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 365 ~l~~l~~L~----~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
.+..+.+|+ .|++++|.+ ..++.......+|++|++++|+++.+| ..+..+++|+.|++++|++....
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPM--NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCC--CEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred HhhhhhhccccceeeecCCCcc--cccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence 555555555 899999954 566665556668999999999999997 56789999999999999998653
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=1.4e-25 Score=224.26 Aligned_cols=265 Identities=22% Similarity=0.233 Sum_probs=211.9
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
..++..+++.+.+...+. .+..+++|++|++++|.++.+ +..+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 345555666666654443 456678999999999999987 4689999999999999999997765 8899999999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCc-c
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGL-P 363 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~ 363 (516)
+|.++.++ ..++|++|++++|.++.++... +++|+.|++++|.+..++. .+..+++|++|++++|.++++ +
T Consensus 89 ~n~l~~l~----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQELL----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEEE----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCcccccc----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 99988664 3489999999999998876553 6889999999999998754 778899999999999999985 3
Q ss_pred hhh-CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchh
Q 010182 364 ATI-GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGV 442 (516)
Q Consensus 364 ~~l-~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 442 (516)
..+ ..+++|++|++++|.+ ..++. ...+++|++|+|++|+|+.+|..+..+++|+.|++++|.++.++..+
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l--~~~~~-~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~----- 233 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFI--YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL----- 233 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCC--CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC-----
T ss_pred HHHhhccCcCCEEECCCCcC--ccccc-ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHh-----
Confidence 444 4789999999999954 45543 34589999999999999999888999999999999999998654321
Q ss_pred HHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCC-CCccccccccEEEccCC-ccccccCC
Q 010182 443 GAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQM-PTGWLTRSTSWLKTVGE-NVSGILGG 503 (516)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~-~~~~~~~~l~~l~l~~N-~ls~~~~~ 503 (516)
...++++.+++++|.+++..+ ......+.+..+++.+| .++|..+.
T Consensus 234 ---------------~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 234 ---------------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp ---------------CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ---------------hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 234678889999999984433 34445566778888743 56665443
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=5.3e-23 Score=222.98 Aligned_cols=224 Identities=32% Similarity=0.338 Sum_probs=172.2
Q ss_pred CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
.++|++|+|++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.|+.+|.. +++|++|++++
T Consensus 80 l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~ 150 (622)
T 3g06_A 80 PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSD 150 (622)
T ss_dssp CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcC
Confidence 4789999999999999987 67999999999999999877 578999999999999999874 48999999999
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI 366 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l 366 (516)
|.++.+|.. ..+|+.|++++|.++.++ ..+++|+.|++++|.++.+|.. +++|+.|++++|.++.+|..
T Consensus 151 N~l~~l~~~---~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~- 219 (622)
T 3g06_A 151 NQLASLPAL---PSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL- 219 (622)
T ss_dssp SCCSCCCCC---CTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC-
T ss_pred CcCCCcCCc---cCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC-
Confidence 999988753 467888888888888877 2368888888888888877653 35677777888777777643
Q ss_pred CCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHH
Q 010182 367 GKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVK 446 (516)
Q Consensus 367 ~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~ 446 (516)
+++|+.|++++|.+ ..+| ..+++|+.|+|++|+|+.+|. .+++|+.|+|++|.|+.+|..+
T Consensus 220 --~~~L~~L~Ls~N~L--~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l--------- 280 (622)
T 3g06_A 220 --PSGLKELIVSGNRL--TSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL--------- 280 (622)
T ss_dssp --CTTCCEEECCSSCC--SCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG---------
T ss_pred --CCCCCEEEccCCcc--CcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH---------
Confidence 46777777777743 3455 455677777777777777765 5677777777777777554321
Q ss_pred HHHhhhhhhHhHHHhhhcccccccccCCCCCCCC
Q 010182 447 TFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT 480 (516)
Q Consensus 447 ~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~ 480 (516)
...++++.++|++|.+++..+..
T Consensus 281 -----------~~l~~L~~L~L~~N~l~~~~~~~ 303 (622)
T 3g06_A 281 -----------IHLSSETTVNLEGNPLSERTLQA 303 (622)
T ss_dssp -----------GGSCTTCEEECCSCCCCHHHHHH
T ss_pred -----------hhccccCEEEecCCCCCCcCHHH
Confidence 13456677777777777654443
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.90 E-value=3.7e-23 Score=205.93 Aligned_cols=194 Identities=20% Similarity=0.363 Sum_probs=101.9
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGN 287 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n 287 (516)
++|++|+++++.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 34555555555555554 34555555555555555555544 555555555555555555543 3445555555555555
Q ss_pred CCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhC
Q 010182 288 KLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIG 367 (516)
Q Consensus 288 ~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~ 367 (516)
.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.+++++. +.
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~~-l~ 170 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDLNQITNISP-------------------------LAGLTNLQYLSIGNAQVSDLTP-LA 170 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-------------------------GGGCTTCCEEECCSSCCCCCGG-GT
T ss_pred CCCCchh-hcCCCCCCEEECCCCccCcCcc-------------------------ccCCCCccEEEccCCcCCCChh-hc
Confidence 5554432 4445555555555555444433 4445555555555555555443 55
Q ss_pred CCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCH
Q 010182 368 KLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 368 ~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.+++|+.|++++|.+ ..++. +..+++|++|++++|+++.++ .+..+++|+.|++++|+++..+.
T Consensus 171 ~l~~L~~L~l~~n~l--~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 171 NLSKLTTLKADDNKI--SDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp TCTTCCEEECCSSCC--CCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEEECCCE
T ss_pred CCCCCCEEECCCCcc--CcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCeeecCCe
Confidence 555555555555533 23332 455555666666666665555 25555666666666666554443
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.1e-22 Score=195.26 Aligned_cols=199 Identities=34% Similarity=0.523 Sum_probs=140.9
Q ss_pred CCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCC
Q 010182 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASF 309 (516)
Q Consensus 232 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~ 309 (516)
+.+.++++++.++.+|..+. ++|++|++++|.++.++. .|..+++|++|++++|.++.++.. +..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35556666666666655443 456666666666665554 556666666666666666666543 35566677777777
Q ss_pred CCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCc
Q 010182 310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKEL 387 (516)
Q Consensus 310 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l 387 (516)
|.++.++...+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|.+. .+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~ 172 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK--RV 172 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS--CC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc--Ee
Confidence 77666666666667777777777777776544 35677788888888888888655 4678888888888888544 34
Q ss_pred c-hhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182 388 P-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 388 ~-~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
+ ..+..+++|+.|+|++|+|+.+| ..+..+++|+.|+|++|++....
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 3 35788899999999999999887 56888999999999999987653
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=4.4e-24 Score=226.04 Aligned_cols=243 Identities=23% Similarity=0.265 Sum_probs=197.5
Q ss_pred CCcchHhhcCCC----CCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCc
Q 010182 220 LRFLPEAFGRIA----GLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPD 294 (516)
Q Consensus 220 l~~l~~~~~~l~----~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~ 294 (516)
...+|..+..+. +|++|+|++|.++.+ |..|..+++|++|+|++|.++.+++ ++.+++|++|+|++|.++.++.
T Consensus 19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~ 97 (487)
T 3oja_A 19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV 97 (487)
T ss_dssp TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE
T ss_pred hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC
Confidence 346676665554 899999999999987 5689999999999999999997765 8899999999999999887653
Q ss_pred ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCC-cchhhC-CCCC
Q 010182 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHG-LPATIG-KLTN 371 (516)
Q Consensus 295 ~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~-~l~~ 371 (516)
.++|++|++++|.++.++.. .+++|+.|++++|.+..+ +..++.+++|++|++++|.+++ .|..+. .+++
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 38999999999999987764 368999999999999976 5578889999999999999998 455564 7899
Q ss_pred CcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhh
Q 010182 372 LEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAK 451 (516)
Q Consensus 372 L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~ 451 (516)
|+.|+|++|.+ .+++. ...+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.++..+
T Consensus 171 L~~L~Ls~N~l--~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l-------------- 233 (487)
T 3oja_A 171 LEHLNLQYNFI--YDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKAL-------------- 233 (487)
T ss_dssp CCEEECTTSCC--CEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTC--------------
T ss_pred ccEEecCCCcc--ccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhh--------------
Confidence 99999999954 45543 44689999999999999999888999999999999999998755421
Q ss_pred hhhhHhHHHhhhcccccccccCCCCCCCC-ccccccccEEEcc
Q 010182 452 RWLDILLEEERRSMLKLEGNNNEGEQMPT-GWLTRSTSWLKTV 493 (516)
Q Consensus 452 ~~l~~~~~~~~l~~l~L~~N~i~~~~~~~-~~~~~~l~~l~l~ 493 (516)
...+.++.+++++|.+.+..++. +...+.+..+++.
T Consensus 234 ------~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 ------RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ------CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ------ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 12356788899999888543333 3334455555554
No 70
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.89 E-value=1.9e-24 Score=226.81 Aligned_cols=292 Identities=18% Similarity=0.181 Sum_probs=179.1
Q ss_pred CCccEEEeecCCCC-----cchHhhcCCCCCcEEEeecCCCCCc-chhh-cCCC----CccEEEeeCCCCC-----Ccch
Q 010182 208 KSLEQVDLSSRGLR-----FLPEAFGRIAGLRLMSLSNNHLEVI-PDSI-AGLV----NLEELNLASNLLE-----TLPD 271 (516)
Q Consensus 208 ~~L~~L~L~~~~l~-----~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l-~~l~----~L~~L~Ls~n~l~-----~l~~ 271 (516)
+++++|++++|.++ .++..+..+++|++|++++|.++.. +..+ ..++ +|++|++++|.++ .++.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 57788888888777 4456677778888888888777632 2222 2333 5888888888777 3456
Q ss_pred hhcCCCCCcEEEeeCCCCCCC-----Cccc-ccCCCCcEEeCCCCCCCcCC----hhhhhcCCCCcEEecCCCCCccc--
Q 010182 272 SIGLLDNLKILDVSGNKLSAL-----PDSI-SHCRSLVELDASFNRLAYLP----TNIGHELVNLQKLLVPLNKIRFL-- 339 (516)
Q Consensus 272 ~l~~l~~L~~L~Ls~n~l~~l-----~~~l-~~l~~L~~L~L~~n~l~~l~----~~~~~~l~~L~~L~L~~n~l~~l-- 339 (516)
.+..+++|++|++++|.++.. ...+ ...++|++|++++|.++... ...+..+++|++|++++|.+...
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 677777888888888776521 1121 22456788888877776533 22233467778888877776632
Q ss_pred ---cchhc-CCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc----chhhcCCCCccEEeccCCC
Q 010182 340 ---PTSIG-EMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL----PETFGELTNLKELDLSNNQ 406 (516)
Q Consensus 340 ---~~~l~-~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l----~~~l~~l~~L~~L~L~~n~ 406 (516)
...+. ..++|++|++++|.++. ++..+..+++|++|++++|.++..++ +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 11221 24577777777777776 45666677777777777775442221 1222356777777777777
Q ss_pred CCC-----chhhhcCCCcccEEecccCCCCCCCHHHHhchhHH----HH-HHHhh---------hhhhHhHHHhhhcccc
Q 010182 407 IHA-----LPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGA----VK-TFMAK---------RWLDILLEEERRSMLK 467 (516)
Q Consensus 407 i~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~----~~-~~~~~---------~~l~~~~~~~~l~~l~ 467 (516)
|+. ++..+..+++|++|++++|.+++.+...+...+.. ++ ..+.. .+...+...+.++.++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 775 56667777777777777777654443333322110 00 00000 0112223446778888
Q ss_pred cccccCCCCCCCCccc-----cccccEEEccCCcccc
Q 010182 468 LEGNNNEGEQMPTGWL-----TRSTSWLKTVGENVSG 499 (516)
Q Consensus 468 L~~N~i~~~~~~~~~~-----~~~l~~l~l~~N~ls~ 499 (516)
+++|++++..+..+.. .+.+..|++++|++++
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 8888887654443332 4578888888888875
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=5.5e-23 Score=201.09 Aligned_cols=222 Identities=24% Similarity=0.269 Sum_probs=186.0
Q ss_pred EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCCC
Q 010182 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRL 312 (516)
Q Consensus 235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l 312 (516)
.++..+..+..+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 46667777888887664 589999999999998876 78899999999999999997754 688899999999999999
Q ss_pred CcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCC--cchhhCCCCCCcEEEcccCCCCCCCc-c
Q 010182 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSSNFTDMKEL-P 388 (516)
Q Consensus 313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~n~~~~~~l-~ 388 (516)
+.++...+..+++|++|++++|.+..++. .+..+++|++|++++|.++. +|..+..+++|++|++++|.+. .+ +
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~--~~~~ 166 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ--SIYC 166 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC--EECG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC--cCCH
Confidence 99887777789999999999999997765 68889999999999999988 6889999999999999999654 33 3
Q ss_pred hhhcCCCCcc----EEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182 389 ETFGELTNLK----ELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS 464 (516)
Q Consensus 389 ~~l~~l~~L~----~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 464 (516)
..+..+.+|+ .|++++|.++.++.......+|+.|++++|.++..+...+. ...+++
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-------------------~l~~L~ 227 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFD-------------------RLTSLQ 227 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTT-------------------TCCSCC
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhc-------------------cccccc
Confidence 4555555555 89999999999886666667999999999999987764433 356788
Q ss_pred ccccccccCCCCCCC
Q 010182 465 MLKLEGNNNEGEQMP 479 (516)
Q Consensus 465 ~l~L~~N~i~~~~~~ 479 (516)
.+++++|.++|....
T Consensus 228 ~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 228 KIWLHTNPWDCSCPR 242 (276)
T ss_dssp EEECCSSCBCCCTTT
T ss_pred EEEccCCcccccCCc
Confidence 899999999987643
No 72
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2.8e-22 Score=199.58 Aligned_cols=166 Identities=20% Similarity=0.304 Sum_probs=130.5
Q ss_pred CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
.++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS
T ss_pred cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC
Confidence 4889999999999999887 999999999999999999885 68999999999999999999875 88999999999999
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhh
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATI 366 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l 366 (516)
|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++++|.+..++. +..+++|++|++++|.+++++. +
T Consensus 139 n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~-l 213 (308)
T 1h6u_A 139 NQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSP-L 213 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCCBCGG-G
T ss_pred CccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccCcccc-c
Confidence 99998865 8889999999999998887665 3446666666666666665543 4555555555555555555442 4
Q ss_pred CCCCCCcEEEcccC
Q 010182 367 GKLTNLEILNVSSN 380 (516)
Q Consensus 367 ~~l~~L~~L~L~~n 380 (516)
..+++|+.|++++|
T Consensus 214 ~~l~~L~~L~l~~N 227 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQ 227 (308)
T ss_dssp TTCTTCCEEEEEEE
T ss_pred cCCCCCCEEEccCC
Confidence 44455555555544
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=3.3e-22 Score=197.33 Aligned_cols=201 Identities=27% Similarity=0.333 Sum_probs=140.3
Q ss_pred hcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcc-hhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEE
Q 010182 227 FGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP-DSIGLLDNLKILDVSGNKLSALPDSISHCRSLVEL 305 (516)
Q Consensus 227 ~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L 305 (516)
+.++++++.++++++.++.+|..+. +++++|++++|.++.++ ..|..+++|++|++++|.++.++.. ..+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 3455666666666666666655443 46666666666666543 3566666666666666666655433 556666666
Q ss_pred eCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCC
Q 010182 306 DASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTD 383 (516)
Q Consensus 306 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~ 383 (516)
++++|.++.++..+ ..+++|+.|++++|.++.++ ..+..+++|++|++++|.++.++. .+..+++|+.|+|++|.+.
T Consensus 83 ~Ls~N~l~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 161 (290)
T 1p9a_G 83 DLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (290)
T ss_dssp ECCSSCCSSCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred ECCCCcCCcCchhh-ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence 66666666665543 34666777777777776665 356777778888888888877654 4577888888888888543
Q ss_pred CCCcch-hhcCCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCC
Q 010182 384 MKELPE-TFGELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 384 ~~~l~~-~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
.+|. .+..+++|+.|+|++|+|+.+|..+..+++|+.|+|++|++...
T Consensus 162 --~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 162 --ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp --CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred --ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCc
Confidence 5554 45778999999999999999998888889999999999999754
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.6e-22 Score=196.28 Aligned_cols=197 Identities=30% Similarity=0.332 Sum_probs=179.1
Q ss_pred CCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 207 GKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
.++++.+++++++++.+|..+. ++++.|++++|.++.+ +..|..+++|++|++++|.|+.++.. +.+++|++|+++
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred cCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 3678999999999999987654 7899999999999977 56899999999999999999988764 789999999999
Q ss_pred CCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch
Q 010182 286 GNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 286 ~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~ 364 (516)
+|.++.+|..+..+++|++|++++|.++.++...+..+++|+.|++++|.+..++.. +..+++|+.|++++|+++.+|.
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~ 165 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA 165 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCH
Confidence 999999999999999999999999999999988888899999999999999988764 5789999999999999999876
Q ss_pred -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC
Q 010182 365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH 408 (516)
Q Consensus 365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~ 408 (516)
.+..+++|+.|+|++|.+ ..+|..+....+|+.|+|++|.+.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l--~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSL--YTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TTTTTCTTCCEEECCSSCC--CCCCTTTTTTCCCSEEECCSCCBC
T ss_pred HHhcCcCCCCEEECCCCcC--CccChhhcccccCCeEEeCCCCcc
Confidence 467899999999999954 588888888999999999999886
No 75
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.88 E-value=4.3e-24 Score=224.08 Aligned_cols=293 Identities=17% Similarity=0.144 Sum_probs=214.9
Q ss_pred CCccEEEeecCCCCcch--HhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCCc-ch-hhcCCC-
Q 010182 208 KSLEQVDLSSRGLRFLP--EAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLETL-PD-SIGLLD- 277 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~--~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~l-~~-~l~~l~- 277 (516)
+++++|+++++.++..+ ..+..+++|++|++++|.++ .++..+..+++|++|++++|.++.. +. .+..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 56899999999998543 34788999999999999998 4577889999999999999998842 22 233344
Q ss_pred ---CCcEEEeeCCCCC-----CCCcccccCCCCcEEeCCCCCCCcCCh-----hhhhcCCCCcEEecCCCCCcc-----c
Q 010182 278 ---NLKILDVSGNKLS-----ALPDSISHCRSLVELDASFNRLAYLPT-----NIGHELVNLQKLLVPLNKIRF-----L 339 (516)
Q Consensus 278 ---~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~L~~n~l~~l~~-----~~~~~l~~L~~L~L~~n~l~~-----l 339 (516)
+|++|++++|.++ .++..+..+++|++|++++|.++.... ......++|++|++++|.++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 7999999999998 357788899999999999999864322 222235689999999999884 4
Q ss_pred cchhcCCCCCcEEEccCCCCCCc-----chhhC-CCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCc
Q 010182 340 PTSIGEMASLRHLDAHFNELHGL-----PATIG-KLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHAL 410 (516)
Q Consensus 340 ~~~l~~l~~L~~L~Ls~n~l~~l-----~~~l~-~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~l 410 (516)
+..+..+++|++|++++|.+++. ...+. ..++|++|++++|.++... ++..+..+++|++|++++|.++..
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 56677889999999999998762 22222 4679999999999765432 577788899999999999998853
Q ss_pred -----h-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHH----Hhhhhhh-----HhHHH-----hhhccccccc
Q 010182 411 -----P-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTF----MAKRWLD-----ILLEE-----ERRSMLKLEG 470 (516)
Q Consensus 411 -----p-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~----~~~~~l~-----~~~~~-----~~l~~l~L~~ 470 (516)
+ ..+..+++|++|++++|.++..+...+...+.....+ +..+.+. .+... .+++.+++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 2334689999999999999865544343322211100 1111111 11111 4788888888
Q ss_pred ccCCCCCC----CCccccccccEEEccCCccccc
Q 010182 471 NNNEGEQM----PTGWLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 471 N~i~~~~~----~~~~~~~~l~~l~l~~N~ls~~ 500 (516)
|.+++... ..+...+.++.|++++|++++.
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 88886632 2223447889999999988875
No 76
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=4e-23 Score=212.10 Aligned_cols=229 Identities=21% Similarity=0.257 Sum_probs=187.9
Q ss_pred CCCccEEEeecCCCCc-----chHhhcCCCCCcEEEeecCCCCC----cchhh-------cCCCCccEEEeeCCCCCC--
Q 010182 207 GKSLEQVDLSSRGLRF-----LPEAFGRIAGLRLMSLSNNHLEV----IPDSI-------AGLVNLEELNLASNLLET-- 268 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~~-----l~~~~~~l~~L~~L~Ls~n~l~~----l~~~l-------~~l~~L~~L~Ls~n~l~~-- 268 (516)
.++|++|++++|.++. ++..+..+++|++|+|++|.+.. +|.++ ..+++|++|+|++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4789999999999884 44557889999999999986653 34444 789999999999999996
Q ss_pred ---cchhhcCCCCCcEEEeeCCCCCC-----CCcccccC---------CCCcEEeCCCCCCC--cCCh--hhhhcCCCCc
Q 010182 269 ---LPDSIGLLDNLKILDVSGNKLSA-----LPDSISHC---------RSLVELDASFNRLA--YLPT--NIGHELVNLQ 327 (516)
Q Consensus 269 ---l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l---------~~L~~L~L~~n~l~--~l~~--~~~~~l~~L~ 327 (516)
++..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.++ .++. ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 67788899999999999999872 33344445 89999999999997 3332 2344688999
Q ss_pred EEecCCCCCc------cccchhcCCCCCcEEEccCCCCC-----CcchhhCCCCCCcEEEcccCCCCCC---Ccchhh--
Q 010182 328 KLLVPLNKIR------FLPTSIGEMASLRHLDAHFNELH-----GLPATIGKLTNLEILNVSSNFTDMK---ELPETF-- 391 (516)
Q Consensus 328 ~L~L~~n~l~------~l~~~l~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~L~~n~~~~~---~l~~~l-- 391 (516)
+|++++|.++ .++..+..+++|++|+|++|.++ .++..+..+++|+.|+|++|.+... .++..+
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 9999999998 23337889999999999999995 3788899999999999999966532 135666
Q ss_pred cCCCCccEEeccCCCCCC-----chhhh-cCCCcccEEecccCCCCCCCH
Q 010182 392 GELTNLKELDLSNNQIHA-----LPNTF-GRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 392 ~~l~~L~~L~L~~n~i~~-----lp~~l-~~l~~L~~L~L~~N~l~~~~~ 435 (516)
+.+++|+.|+|++|.|+. +|..+ .++++|+.|++++|+++..+.
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 348999999999999997 88777 668999999999999998774
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.5e-21 Score=190.50 Aligned_cols=197 Identities=33% Similarity=0.462 Sum_probs=175.1
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls 285 (516)
...+.++++++.++.+|..+. ++|+.|++++|.++.++. .|.++++|++|++++|.++.++. .|..+++|++|+++
T Consensus 16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 457899999999999987554 789999999999998864 79999999999999999999886 45889999999999
Q ss_pred CCCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcc
Q 010182 286 GNKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 286 ~n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
+|.++.++. .+..+++|++|++++|.++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.++.++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 999998865 467899999999999999999988888899999999999999988765 788999999999999999976
Q ss_pred h-hhCCCCCCcEEEcccCCCCCCCcch-hhcCCCCccEEeccCCCCC
Q 010182 364 A-TIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIH 408 (516)
Q Consensus 364 ~-~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~i~ 408 (516)
. .+..+++|++|++++|.+. .++. .+..+++|+.|+|++|.+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLK--RVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCS--CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCC--cCCHHHhccccCCCEEEecCCCee
Confidence 5 5888999999999999654 4544 5788999999999999876
No 78
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.6e-23 Score=215.04 Aligned_cols=248 Identities=19% Similarity=0.233 Sum_probs=193.9
Q ss_pred eecCCCCcchHhhcCCCCCcEEEeecCCCCC-----cchhhcCCCCccEEEeeCCCCCCc----chhh-------cCCCC
Q 010182 215 LSSRGLRFLPEAFGRIAGLRLMSLSNNHLEV-----IPDSIAGLVNLEELNLASNLLETL----PDSI-------GLLDN 278 (516)
Q Consensus 215 L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l~~l----~~~l-------~~l~~ 278 (516)
++...+..++..+..+++|+.|+|++|.++. ++..+..+++|++|+|++|.+..+ |..+ ..+++
T Consensus 16 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~ 95 (386)
T 2ca6_A 16 ITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPK 95 (386)
T ss_dssp CCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTT
T ss_pred CCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCc
Confidence 3333444677788889999999999999884 345578899999999999877633 4333 68899
Q ss_pred CcEEEeeCCCCCC-----CCcccccCCCCcEEeCCCCCCCcCChhhh----hcC---------CCCcEEecCCCCCc--c
Q 010182 279 LKILDVSGNKLSA-----LPDSISHCRSLVELDASFNRLAYLPTNIG----HEL---------VNLQKLLVPLNKIR--F 338 (516)
Q Consensus 279 L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~l~~~~~----~~l---------~~L~~L~L~~n~l~--~ 338 (516)
|++|+|++|.++. ++..+..+++|++|++++|.++......+ ..+ ++|++|++++|.++ .
T Consensus 96 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 96 LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp CCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred ccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 9999999999986 67788899999999999999874332222 223 89999999999996 3
Q ss_pred cc---chhcCCCCCcEEEccCCCCCC------cchhhCCCCCCcEEEcccCCCCC---CCcchhhcCCCCccEEeccCCC
Q 010182 339 LP---TSIGEMASLRHLDAHFNELHG------LPATIGKLTNLEILNVSSNFTDM---KELPETFGELTNLKELDLSNNQ 406 (516)
Q Consensus 339 l~---~~l~~l~~L~~L~Ls~n~l~~------l~~~l~~l~~L~~L~L~~n~~~~---~~l~~~l~~l~~L~~L~L~~n~ 406 (516)
++ ..+..+++|++|++++|.++. ++..+..+++|+.|+|++|.++. ..++..+..+++|++|+|++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 44 467788999999999999983 33378899999999999996532 4567788999999999999999
Q ss_pred CCCc-----hhhhcC--CCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHh-HHHhhhcccccccccCCCCC
Q 010182 407 IHAL-----PNTFGR--LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDIL-LEEERRSMLKLEGNNNEGEQ 477 (516)
Q Consensus 407 i~~l-----p~~l~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~L~~N~i~~~~ 477 (516)
|+.. +..+.. +++|+.|+|++|.++..+...+.. .+ ...++++.+++++|.+++..
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~---------------~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT---------------VIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH---------------HHHHHCTTCCEEECTTSBSCTTS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH---------------HHHhcCCCceEEEccCCcCCcch
Confidence 9853 667744 999999999999987532222211 11 23478899999999999775
No 79
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=5.7e-22 Score=197.38 Aligned_cols=221 Identities=20% Similarity=0.229 Sum_probs=179.8
Q ss_pred CCccEEEeecCCCCc--chH--hhcCCCCCcEEEeecCCCCC-cchhh--cCCCCccEEEeeCCCCCCc-c----hhhcC
Q 010182 208 KSLEQVDLSSRGLRF--LPE--AFGRIAGLRLMSLSNNHLEV-IPDSI--AGLVNLEELNLASNLLETL-P----DSIGL 275 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~--l~~--~~~~l~~L~~L~Ls~n~l~~-l~~~l--~~l~~L~~L~Ls~n~l~~l-~----~~l~~ 275 (516)
..++.+.+.++.+.. +.. .+..+++|++|++++|.+.. .|..+ ..+++|++|++++|.++.. + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 567889998888762 221 12335779999999999984 46666 8899999999999999852 2 24457
Q ss_pred CCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCCCc---CCh-hhhhcCCCCcEEecCCCCCccccch----hcCC
Q 010182 276 LDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRLAY---LPT-NIGHELVNLQKLLVPLNKIRFLPTS----IGEM 346 (516)
Q Consensus 276 l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~---l~~-~~~~~l~~L~~L~L~~n~l~~l~~~----l~~l 346 (516)
+++|++|++++|.+..++ ..+..+++|++|++++|.+.. ++. .....+++|++|++++|+++.++.. +..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 899999999999999775 678899999999999999753 222 2234689999999999999866552 4778
Q ss_pred CCCcEEEccCCCCCCc-chhhCCC---CCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCchhhhcCCCcccE
Q 010182 347 ASLRHLDAHFNELHGL-PATIGKL---TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALPNTFGRLDKLIK 422 (516)
Q Consensus 347 ~~L~~L~Ls~n~l~~l-~~~l~~l---~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~ 422 (516)
++|++|++++|.++++ |..+..+ ++|++|+|++|.+. .+|..+. ++|++|+|++|+|+.+|. +..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~--~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE--QVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC--SCCSCCC--SCCSCEECCSCCCCSCCC-TTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC--chhhhhc--CCCCEEECCCCcCCCCch-hhhCCCccE
Confidence 9999999999999996 7766666 69999999999654 7777664 799999999999999875 788999999
Q ss_pred EecccCCCCCC
Q 010182 423 LNLEENPMVIP 433 (516)
Q Consensus 423 L~L~~N~l~~~ 433 (516)
|+|++|++++.
T Consensus 299 L~L~~N~l~~~ 309 (310)
T 4glp_A 299 LTLDGNPFLVP 309 (310)
T ss_dssp EECSSTTTSCC
T ss_pred EECcCCCCCCC
Confidence 99999999865
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=9.8e-22 Score=188.07 Aligned_cols=200 Identities=19% Similarity=0.288 Sum_probs=152.8
Q ss_pred CCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCC-CCCcch-hhcCCCCCcEEEeeC-CCCCCCC-c
Q 010182 220 LRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNL-LETLPD-SIGLLDNLKILDVSG-NKLSALP-D 294 (516)
Q Consensus 220 l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~-l~~l~~-~l~~l~~L~~L~Ls~-n~l~~l~-~ 294 (516)
++.+|. +. ++|++|++++|.++.++. .|.++++|++|++++|. ++.++. .|..+++|++|++++ |.++.++ .
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 677776 33 478888888888887754 67788888888888886 777765 677888888888887 7888775 4
Q ss_pred ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCc---EEecCCC-CCccccc-hhcCCCCCc-EEEccCCCCCCcchhhCC
Q 010182 295 SISHCRSLVELDASFNRLAYLPTNIGHELVNLQ---KLLVPLN-KIRFLPT-SIGEMASLR-HLDAHFNELHGLPATIGK 368 (516)
Q Consensus 295 ~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~---~L~L~~n-~l~~l~~-~l~~l~~L~-~L~Ls~n~l~~l~~~l~~ 368 (516)
.+..+++|++|++++|.++.+|. +..+.+|+ .|++++| .++.++. .+..+++|+ +|++++|.++.+|.....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 56778888888888888887776 44577777 8888888 8887765 467788888 888888888887665444
Q ss_pred CCCCcEEEcccCC-CCCCCc-chhhcCC-CCccEEeccCCCCCCchhhhcCCCcccEEecccC
Q 010182 369 LTNLEILNVSSNF-TDMKEL-PETFGEL-TNLKELDLSNNQIHALPNTFGRLDKLIKLNLEEN 428 (516)
Q Consensus 369 l~~L~~L~L~~n~-~~~~~l-~~~l~~l-~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N 428 (516)
.++|+.|++++|. +. .+ +..+..+ ++|+.|++++|+|+.+|.. .+++|+.|+++++
T Consensus 178 ~~~L~~L~L~~n~~l~--~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLT--VIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCEEEEEECTTCTTCC--EECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC
T ss_pred CCCCCEEEcCCCCCcc--cCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCc
Confidence 4788888888883 43 44 3457777 8899999999999888754 6788888888876
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=1.1e-21 Score=191.59 Aligned_cols=204 Identities=29% Similarity=0.418 Sum_probs=124.2
Q ss_pred CCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCC
Q 010182 229 RIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDAS 308 (516)
Q Consensus 229 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~ 308 (516)
.+++|+.|++++|.+..++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.
T Consensus 39 ~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-------------------- 96 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-------------------- 96 (272)
T ss_dssp HHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC--------------------
T ss_pred cccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc--------------------
Confidence 3455555555555555442 3444555555555555555442 34444455555555554
Q ss_pred CCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCC
Q 010182 309 FNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKE 386 (516)
Q Consensus 309 ~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~ 386 (516)
++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.+++++. .+..+++|+.|++++|.+. .
T Consensus 97 ---l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~ 171 (272)
T 3rfs_A 97 ---LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--S 171 (272)
T ss_dssp ---CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--C
T ss_pred ---cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--c
Confidence 4444444444455555555555555544332 4556667777777776666543 3567777777777777544 3
Q ss_pred cc-hhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhc
Q 010182 387 LP-ETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRS 464 (516)
Q Consensus 387 l~-~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~ 464 (516)
++ ..++.+++|++|++++|+++.++ ..+..+++|+.|++++|++.... +.++
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~--------------------------~~l~ 225 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC--------------------------PGIR 225 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT--------------------------TTTH
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC--------------------------cHHH
Confidence 33 34677888888888888888876 55788899999999999886432 2345
Q ss_pred ccccccccCCCCCCCCccccc
Q 010182 465 MLKLEGNNNEGEQMPTGWLTR 485 (516)
Q Consensus 465 ~l~L~~N~i~~~~~~~~~~~~ 485 (516)
.+++..|+++|..+.+.....
T Consensus 226 ~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 226 YLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp HHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHHHHhCCCcccCcccccC
Confidence 567778888887766655443
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=2e-21 Score=185.92 Aligned_cols=195 Identities=22% Similarity=0.262 Sum_probs=173.0
Q ss_pred hCCCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCC-CCCcch-hhcCCCCccEEEeeC-CCCCCcch-hhcCCCCCc
Q 010182 206 AGKSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNH-LEVIPD-SIAGLVNLEELNLAS-NLLETLPD-SIGLLDNLK 280 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~-l~~l~~-~l~~l~~L~~L~Ls~-n~l~~l~~-~l~~l~~L~ 280 (516)
...++++|++++|.++.++. .|..+++|++|++++|. ++.++. .|.++++|++|++++ |.++.++. .|..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 34689999999999998877 78999999999999997 998865 789999999999998 99998874 788999999
Q ss_pred EEEeeCCCCCCCCcccccCCCCc---EEeCCCC-CCCcCChhhhhcCCCCc-EEecCCCCCccccchhcCCCCCcEEEcc
Q 010182 281 ILDVSGNKLSALPDSISHCRSLV---ELDASFN-RLAYLPTNIGHELVNLQ-KLLVPLNKIRFLPTSIGEMASLRHLDAH 355 (516)
Q Consensus 281 ~L~Ls~n~l~~l~~~l~~l~~L~---~L~L~~n-~l~~l~~~~~~~l~~L~-~L~L~~n~l~~l~~~l~~l~~L~~L~Ls 355 (516)
+|++++|.++.+|. +..+++|+ +|++++| .++.++...+..+++|+ .|++++|++..++......++|++|+++
T Consensus 109 ~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~ 187 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLN 187 (239)
T ss_dssp EEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECT
T ss_pred EEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcC
Confidence 99999999999986 88888888 9999999 99999998888899999 9999999999888766555899999999
Q ss_pred CCC-CCCcc-hhhCCC-CCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC
Q 010182 356 FNE-LHGLP-ATIGKL-TNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN 405 (516)
Q Consensus 356 ~n~-l~~l~-~~l~~l-~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n 405 (516)
+|. ++.++ ..+..+ ++|+.|++++|.+ ..+|.. .+++|+.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l--~~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCC--CCCCCT--TCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCcc--ccCChh--HhccCceeeccCc
Confidence 995 99875 467888 9999999999954 466654 7889999999887
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=3e-21 Score=188.49 Aligned_cols=202 Identities=26% Similarity=0.399 Sum_probs=175.0
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG 286 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~ 286 (516)
.+++.|+++++.++.++. +..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. .+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~~-l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQG-IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCTT-GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCcccccc-cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 789999999999998764 788999999999999999874 78999999999999999998876 578999999999999
Q ss_pred CCCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch
Q 010182 287 NKLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 287 n~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~ 364 (516)
|.++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|+++.++.. +..+++|++|++++|.+++++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999988654 78899999999999999999988877899999999999999987654 5888999999999999999654
Q ss_pred -hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC-CchhhhcCCCc
Q 010182 365 -TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH-ALPNTFGRLDK 419 (516)
Q Consensus 365 -~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~ 419 (516)
.+..+++|+.|++++|.+. +.+++|+.|+++.|.++ .+|..++.++.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccCcccccCC
Confidence 5788999999999999432 34678889999999887 56776666554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=9.6e-22 Score=197.52 Aligned_cols=249 Identities=18% Similarity=0.250 Sum_probs=199.3
Q ss_pred CCccEEEeecCCCCcchHhhcCC--CCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC--cchhhcCCCCCcEEE
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRI--AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET--LPDSIGLLDNLKILD 283 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l--~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~ 283 (516)
..++.++++++.+. +..+..+ ++++.|++++|.+...+..+..+++|++|++++|.++. ++..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 45788999998877 5556666 89999999999998776667789999999999999883 777888999999999
Q ss_pred eeCCCCC-CCCcccccCCCCcEEeCCCC-CCCc--CChhhhhcCCCCcEEecCCC-CCcc--ccchhcCCC-CCcEEEcc
Q 010182 284 VSGNKLS-ALPDSISHCRSLVELDASFN-RLAY--LPTNIGHELVNLQKLLVPLN-KIRF--LPTSIGEMA-SLRHLDAH 355 (516)
Q Consensus 284 Ls~n~l~-~l~~~l~~l~~L~~L~L~~n-~l~~--l~~~~~~~l~~L~~L~L~~n-~l~~--l~~~l~~l~-~L~~L~Ls 355 (516)
+++|.++ ..+..+..+++|++|++++| .++. ++. .+..+++|++|++++| .++. ++..+..++ +|++|+++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 9999988 45677888999999999999 6764 333 3456999999999999 8884 667788899 99999999
Q ss_pred CC--CCCC--cchhhCCCCCCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCCC-CCCch-hhhcCCCcccEEecccC
Q 010182 356 FN--ELHG--LPATIGKLTNLEILNVSSNF-TDMKELPETFGELTNLKELDLSNNQ-IHALP-NTFGRLDKLIKLNLEEN 428 (516)
Q Consensus 356 ~n--~l~~--l~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n~-i~~lp-~~l~~l~~L~~L~L~~N 428 (516)
+| .+++ ++..+..+++|+.|++++|. ++ ...+..+..+++|++|++++|. ++... ..+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK-NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC-GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC-HHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 99 5553 77788889999999999996 44 3445678899999999999995 43221 36888999999999999
Q ss_pred CCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcc
Q 010182 429 PMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW 482 (516)
Q Consensus 429 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~ 482 (516)
++......+. ..+..+++++|++++..++...
T Consensus 283 -i~~~~~~~l~---------------------~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 283 -VPDGTLQLLK---------------------EALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp -SCTTCHHHHH---------------------HHSTTSEESCCCSCCTTCSSCS
T ss_pred -cCHHHHHHHH---------------------hhCcceEEecccCccccCCccc
Confidence 5433322111 3466788999999988766543
No 85
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.86 E-value=4.1e-21 Score=205.80 Aligned_cols=188 Identities=29% Similarity=0.409 Sum_probs=129.1
Q ss_pred HHHHhHHhhCCCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCC
Q 010182 198 VMGLLQEAAGKSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLD 277 (516)
Q Consensus 198 ~~~~l~~~~~~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~ 277 (516)
.+..++.+...+++.|+|++|.++.+|..+ +++|++|++++|.++.+| ..+++|++|++++|.|+.+|. +..
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~-- 120 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA-- 120 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--
Confidence 455555555568888999888888887755 377888888888888887 456788888888888888877 544
Q ss_pred CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCC
Q 010182 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFN 357 (516)
Q Consensus 278 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n 357 (516)
+|++|++++|.++.+|. .+++|+.|++++|.++.+|. .+++|+.|++++|.++.+|. +. ++|++|++++|
T Consensus 121 ~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N 190 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTN 190 (571)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSS
T ss_pred CCCEEECCCCcCCCCCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCC
Confidence 78888888888887766 56778888888888877765 36677777777777777666 44 67777777777
Q ss_pred CCCCcchhhCCCCCC-------cEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCC
Q 010182 358 ELHGLPATIGKLTNL-------EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIH 408 (516)
Q Consensus 358 ~l~~l~~~l~~l~~L-------~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~ 408 (516)
.++.+|. +.. +| +.|+|++|.+ ..+|..+..+++|+.|+|++|.++
T Consensus 191 ~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l--~~lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 191 LLESLPA-VPV--RNHHSEETEIFFRCRENRI--THIPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp CCSSCCC-CC----------CCEEEECCSSCC--CCCCGGGGGSCTTEEEECCSSSCC
T ss_pred CCCchhh-HHH--hhhcccccceEEecCCCcc--eecCHHHhcCCCCCEEEeeCCcCC
Confidence 7776665 332 44 5555555522 244444444555555555555554
No 86
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=9.5e-22 Score=200.18 Aligned_cols=226 Identities=21% Similarity=0.253 Sum_probs=127.9
Q ss_pred CCccEEEeecCCCCcch-----HhhcCCC-CCcEEEeecCCCCCc-chhhcCC-----CCccEEEeeCCCCCCcch----
Q 010182 208 KSLEQVDLSSRGLRFLP-----EAFGRIA-GLRLMSLSNNHLEVI-PDSIAGL-----VNLEELNLASNLLETLPD---- 271 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~-----~~~~~l~-~L~~L~Ls~n~l~~l-~~~l~~l-----~~L~~L~Ls~n~l~~l~~---- 271 (516)
.+|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++|++|++++|.++..+.
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~ 101 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV 101 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence 44677777777666443 4566666 677777777766643 3334332 667777777776664322
Q ss_pred -hhcCC-CCCcEEEeeCCCCCCCCc-----cccc-CCCCcEEeCCCCCCCcCChhh----hhcCC-CCcEEecCCCCCcc
Q 010182 272 -SIGLL-DNLKILDVSGNKLSALPD-----SISH-CRSLVELDASFNRLAYLPTNI----GHELV-NLQKLLVPLNKIRF 338 (516)
Q Consensus 272 -~l~~l-~~L~~L~Ls~n~l~~l~~-----~l~~-l~~L~~L~L~~n~l~~l~~~~----~~~l~-~L~~L~L~~n~l~~ 338 (516)
.+..+ ++|++|++++|.++..+. .+.. +++|++|++++|.++...... +..++ +|++|++++|.++.
T Consensus 102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 181 (362)
T 3goz_A 102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS 181 (362)
T ss_dssp HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence 23344 667777777776664422 1223 346777777777666322211 11233 67777777776653
Q ss_pred cc-----chhcCC-CCCcEEEccCCCCCC-----cchhhCC-CCCCcEEEcccCCCCCCCc---chhhcCCCCccEEecc
Q 010182 339 LP-----TSIGEM-ASLRHLDAHFNELHG-----LPATIGK-LTNLEILNVSSNFTDMKEL---PETFGELTNLKELDLS 403 (516)
Q Consensus 339 l~-----~~l~~l-~~L~~L~Ls~n~l~~-----l~~~l~~-l~~L~~L~L~~n~~~~~~l---~~~l~~l~~L~~L~L~ 403 (516)
.. ..+..+ ++|++|++++|.+++ ++..+.. .++|++|+|++|.++..+. ...+..+++|+.|+|+
T Consensus 182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 32 233344 467777777776666 4444544 3467777777775554322 3344556667777777
Q ss_pred CCCCCC--------chhhhcCCCcccEEecccCCCCCC
Q 010182 404 NNQIHA--------LPNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 404 ~n~i~~--------lp~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
+|.+.. ++..+..+++|+.|++++|.+...
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 776332 233455666677777777766544
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=6e-21 Score=189.98 Aligned_cols=199 Identities=19% Similarity=0.177 Sum_probs=166.7
Q ss_pred hCCCccEEEeecCCCC-cchHhh--cCCCCCcEEEeecCCCCCc-c----hhhcCCCCccEEEeeCCCCCCcc-hhhcCC
Q 010182 206 AGKSLEQVDLSSRGLR-FLPEAF--GRIAGLRLMSLSNNHLEVI-P----DSIAGLVNLEELNLASNLLETLP-DSIGLL 276 (516)
Q Consensus 206 ~~~~L~~L~L~~~~l~-~l~~~~--~~l~~L~~L~Ls~n~l~~l-~----~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l 276 (516)
..++|++|++++|.+. ..|..+ ..+++|++|++++|.++.. + ..+..+++|++|++++|.++.++ ..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3467999999999998 455566 8899999999999999852 2 34567999999999999999776 578899
Q ss_pred CCCcEEEeeCCCCCC---CC--cccccCCCCcEEeCCCCCCCcCChh---hhhcCCCCcEEecCCCCCccc-cchhcCC-
Q 010182 277 DNLKILDVSGNKLSA---LP--DSISHCRSLVELDASFNRLAYLPTN---IGHELVNLQKLLVPLNKIRFL-PTSIGEM- 346 (516)
Q Consensus 277 ~~L~~L~Ls~n~l~~---l~--~~l~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~l~~l-~~~l~~l- 346 (516)
++|++|++++|++.. ++ ..+..+++|++|++++|.++.++.. .+..+++|++|++++|.+... |..+..+
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999999763 32 3346789999999999999876654 445689999999999999976 7777666
Q ss_pred --CCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCC
Q 010182 347 --ASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA 409 (516)
Q Consensus 347 --~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~ 409 (516)
++|++|++++|.++.+|..+. ++|+.|+|++|.+. ++|. +..+++|+.|+|++|+|++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~--~~~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN--RAPQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC--SCCC-TTSCCCCSCEECSSTTTSC
T ss_pred CcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC--CCch-hhhCCCccEEECcCCCCCC
Confidence 699999999999999988774 79999999999654 5544 6788999999999999874
No 88
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=1.1e-20 Score=202.54 Aligned_cols=185 Identities=30% Similarity=0.412 Sum_probs=162.6
Q ss_pred CCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCC
Q 010182 231 AGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFN 310 (516)
Q Consensus 231 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n 310 (516)
.+|+.|++++|.++.+|..+ +++|++|+|++|.|+.+| ..+++|++|++++|.|+.+|. +.. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence 48999999999999998866 379999999999999998 468999999999999999988 655 9999999999
Q ss_pred CCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchh
Q 010182 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPET 390 (516)
Q Consensus 311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~ 390 (516)
.++.+|. .+++|+.|++++|.++.+|. .+++|++|++++|.++++|. +. ++|+.|+|++|.+ ..+|.
T Consensus 131 ~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L--~~lp~- 197 (571)
T 3cvr_A 131 QLTMLPE----LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLL--ESLPA- 197 (571)
T ss_dssp CCSCCCC----CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCC--SSCCC-
T ss_pred cCCCCCC----cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCC--Cchhh-
Confidence 9999887 48999999999999999887 57899999999999999988 65 8999999999955 47776
Q ss_pred hcCCCCc-------cEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHHH
Q 010182 391 FGELTNL-------KELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEVV 438 (516)
Q Consensus 391 l~~l~~L-------~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~ 438 (516)
+.. +| +.|+|++|+|+.+|..+..+++|+.|+|++|++++..+..+
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 544 67 99999999999999888889999999999999986544443
No 89
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=7.7e-22 Score=200.87 Aligned_cols=253 Identities=19% Similarity=0.186 Sum_probs=193.1
Q ss_pred EEEeecCCCCcc-hHhhcCCCCCcEEEeecCCCCCcc-----hhhcCCC-CccEEEeeCCCCCCc-chhhcCC-----CC
Q 010182 212 QVDLSSRGLRFL-PEAFGRIAGLRLMSLSNNHLEVIP-----DSIAGLV-NLEELNLASNLLETL-PDSIGLL-----DN 278 (516)
Q Consensus 212 ~L~L~~~~l~~l-~~~~~~l~~L~~L~Ls~n~l~~l~-----~~l~~l~-~L~~L~Ls~n~l~~l-~~~l~~l-----~~ 278 (516)
.++++.+.++.. |..+...++|++|++++|.++..+ ..+..++ +|++|+|++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 467889999855 445555566999999999999664 6788898 999999999999855 3344443 99
Q ss_pred CcEEEeeCCCCCCCCc-----ccccC-CCCcEEeCCCCCCCcCChhhhh----c-CCCCcEEecCCCCCc-----cccch
Q 010182 279 LKILDVSGNKLSALPD-----SISHC-RSLVELDASFNRLAYLPTNIGH----E-LVNLQKLLVPLNKIR-----FLPTS 342 (516)
Q Consensus 279 L~~L~Ls~n~l~~l~~-----~l~~l-~~L~~L~L~~n~l~~l~~~~~~----~-l~~L~~L~L~~n~l~-----~l~~~ 342 (516)
|++|++++|.++..+. .+..+ ++|++|++++|.++..+...+. . ..+|++|++++|.++ .++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 9999999999985532 25555 8999999999999887765432 2 369999999999998 45556
Q ss_pred hcCCC-CCcEEEccCCCCCCcc-----hhhCCC-CCCcEEEcccCCCCCCC---cchhhcC-CCCccEEeccCCCCCCch
Q 010182 343 IGEMA-SLRHLDAHFNELHGLP-----ATIGKL-TNLEILNVSSNFTDMKE---LPETFGE-LTNLKELDLSNNQIHALP 411 (516)
Q Consensus 343 l~~l~-~L~~L~Ls~n~l~~l~-----~~l~~l-~~L~~L~L~~n~~~~~~---l~~~l~~-l~~L~~L~L~~n~i~~lp 411 (516)
+..+. +|++|++++|.+++.. ..+..+ ++|++|+|++|.++..+ ++..+.. .++|++|+|++|.|+..+
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 66665 9999999999998732 355666 59999999999665332 4555655 459999999999999753
Q ss_pred -----hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCC
Q 010182 412 -----NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGE 476 (516)
Q Consensus 412 -----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~ 476 (516)
..+..+++|+.|+|++|.+.......+.. ....+...+.++.+++++|++.+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~------------l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKA------------LGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHH------------HHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHH------------HHHHhccCCceEEEecCCCcCCCc
Confidence 44577899999999999987776654321 112223456788899999998876
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=4.4e-22 Score=200.04 Aligned_cols=250 Identities=18% Similarity=0.156 Sum_probs=201.1
Q ss_pred CCCcEEEeecCCCCCcchhhcCC--CCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC--CCcccccCCCCcEEe
Q 010182 231 AGLRLMSLSNNHLEVIPDSIAGL--VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA--LPDSISHCRSLVELD 306 (516)
Q Consensus 231 ~~L~~L~Ls~n~l~~l~~~l~~l--~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~ 306 (516)
..++.++++++.+. +..+..+ ++++.|++++|.++..+..+..+++|++|++++|.++. ++..+..+++|++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 45889999999887 4556666 89999999999999777667789999999999999873 677788899999999
Q ss_pred CCCCCCCcCChhhhhcCCCCcEEecCCC-CCc--cccchhcCCCCCcEEEccCC-CCCC--cchhhCCCC-CCcEEEccc
Q 010182 307 ASFNRLAYLPTNIGHELVNLQKLLVPLN-KIR--FLPTSIGEMASLRHLDAHFN-ELHG--LPATIGKLT-NLEILNVSS 379 (516)
Q Consensus 307 L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~--~l~~~l~~l~~L~~L~Ls~n-~l~~--l~~~l~~l~-~L~~L~L~~ 379 (516)
+++|.++......+..+++|++|++++| .++ .++..+..+++|++|++++| .+++ ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 9999987544444556999999999999 687 46777889999999999999 9986 677788899 999999999
Q ss_pred C--CCCCCCcchhhcCCCCccEEeccCCC-CC-CchhhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhh
Q 010182 380 N--FTDMKELPETFGELTNLKELDLSNNQ-IH-ALPNTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLD 455 (516)
Q Consensus 380 n--~~~~~~l~~~l~~l~~L~~L~L~~n~-i~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~ 455 (516)
| .+....++..+..+++|++|++++|. ++ ..+..+..+++|+.|++++|. ...... +.
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~----------------~~ 266 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY--DIIPET----------------LL 266 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT--TCCGGG----------------GG
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC--CCCHHH----------------HH
Confidence 9 44446677888899999999999999 66 456788999999999999996 221111 11
Q ss_pred HhHHHhhhcccccccccCCCCCCCCccccccccEEEccCCccccccCC
Q 010182 456 ILLEEERRSMLKLEGNNNEGEQMPTGWLTRSTSWLKTVGENVSGILGG 503 (516)
Q Consensus 456 ~~~~~~~l~~l~L~~N~i~~~~~~~~~~~~~l~~l~l~~N~ls~~~~~ 503 (516)
.+...++++.+++++| ++....... ...+..|++++|++++..+.
T Consensus 267 ~l~~~~~L~~L~l~~~-i~~~~~~~l--~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 267 ELGEIPTLKTLQVFGI-VPDGTLQLL--KEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp GGGGCTTCCEEECTTS-SCTTCHHHH--HHHSTTSEESCCCSCCTTCS
T ss_pred HHhcCCCCCEEeccCc-cCHHHHHHH--HhhCcceEEecccCccccCC
Confidence 1234678899999988 554333222 23478888999999998876
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.7e-19 Score=173.92 Aligned_cols=176 Identities=31% Similarity=0.466 Sum_probs=110.6
Q ss_pred CCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCC
Q 010182 232 GLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFN 310 (516)
Q Consensus 232 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n 310 (516)
+.+.++++++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------- 73 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------------------- 73 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-------------------
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-------------------
Confidence 34556666666665555443 355555555555554433 34555555555555555554
Q ss_pred CCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCcc
Q 010182 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELP 388 (516)
Q Consensus 311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~ 388 (516)
++...+..+++|++|++++|.+..++. .+..+++|++|++++|.++.++. .+..+++|+.|+|++|.+. .++
T Consensus 74 ----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~ 147 (251)
T 3m19_A 74 ----LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIP 147 (251)
T ss_dssp ----CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCC
T ss_pred ----cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC--ccC
Confidence 444333344444455555444444432 34556666666666666666544 3566777888888887443 444
Q ss_pred h-hhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182 389 E-TFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 389 ~-~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
. .+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++...+
T Consensus 148 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred HHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 4 5778889999999999999886 57888999999999999998653
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=6.1e-20 Score=181.13 Aligned_cols=188 Identities=23% Similarity=0.293 Sum_probs=128.8
Q ss_pred EEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCC
Q 010182 213 VDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSAL 292 (516)
Q Consensus 213 L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l 292 (516)
+.+..+.+..+.. +..+++|+.|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.++.+
T Consensus 29 ~~l~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~ 105 (291)
T 1h6t_A 29 DNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDL 105 (291)
T ss_dssp HHTTCSCTTSEEC-HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCG
T ss_pred HHhcCCCcccccc-hhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCC
Confidence 3344555554322 345778888888888888774 47778888888888888888776 77888888888888888876
Q ss_pred CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCC
Q 010182 293 PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNL 372 (516)
Q Consensus 293 ~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L 372 (516)
+ .+..+++|++|++++|.++.++. +..+++|+.|++++|.+..+ ..+..+++|++|++++|.+++++. +..+++|
T Consensus 106 ~-~l~~l~~L~~L~L~~n~i~~~~~--l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L 180 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKL 180 (291)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred h-hhccCCCCCEEECCCCcCCCChh--hcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCcc
Confidence 4 37778888888888888777632 33467777777777777666 456666667777777666666544 6666666
Q ss_pred cEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182 373 EILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411 (516)
Q Consensus 373 ~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp 411 (516)
+.|++++|.+ ..++ .+..+++|+.|++++|+++..|
T Consensus 181 ~~L~L~~N~i--~~l~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 181 QNLYLSKNHI--SDLR-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp CEEECCSSCC--CBCG-GGTTCTTCSEEEEEEEEEECCC
T ss_pred CEEECCCCcC--CCCh-hhccCCCCCEEECcCCcccCCc
Confidence 6666666633 3343 3556666666666666665543
No 93
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.4e-20 Score=185.76 Aligned_cols=174 Identities=23% Similarity=0.324 Sum_probs=95.9
Q ss_pred CCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEec
Q 010182 252 GLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLV 331 (516)
Q Consensus 252 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 331 (516)
.+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++. +..+++|+.|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence 44555566666665555532 5555566666666665555544 5555566666666665555443 234555666666
Q ss_pred CCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch
Q 010182 332 PLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP 411 (516)
Q Consensus 332 ~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp 411 (516)
++|.+..+ ..+..+++|++|++++|.++++ ..+..+++|+.|++++|.+ ..++. +..+++|+.|++++|.|+.++
T Consensus 120 ~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l--~~~~~-l~~l~~L~~L~L~~N~i~~l~ 194 (291)
T 1h6t_A 120 EHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI--SDIVP-LAGLTKLQNLYLSKNHISDLR 194 (291)
T ss_dssp TTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC--CCCGG-GTTCTTCCEEECCSSCCCBCG
T ss_pred CCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc--ccchh-hcCCCccCEEECCCCcCCCCh
Confidence 66655554 3455555566666666655555 3455555566666665533 23332 555556666666666655554
Q ss_pred hhhcCCCcccEEecccCCCCCCCH
Q 010182 412 NTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 412 ~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.+..+++|+.|++++|++...+.
T Consensus 195 -~l~~l~~L~~L~l~~n~i~~~~~ 217 (291)
T 1h6t_A 195 -ALAGLKNLDVLELFSQECLNKPI 217 (291)
T ss_dssp -GGTTCTTCSEEEEEEEEEECCCE
T ss_pred -hhccCCCCCEEECcCCcccCCcc
Confidence 25555566666666665554443
No 94
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.82 E-value=1.7e-19 Score=173.78 Aligned_cols=173 Identities=25% Similarity=0.401 Sum_probs=139.1
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls 285 (516)
...++++++++.++.+|..+. ++|+.|++++|.+..+ +..|.++++|++|++++|.++.++. .+..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 457789999999999998665 7899999999999987 4579999999999999999998765 57889999999999
Q ss_pred CCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcc
Q 010182 286 GNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 286 ~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
+|.++.++ ..+..+++|++|++++|.++.++...+..+++|+.|++++|.++.++. .+..+++|++|++++|.++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 99999876 456788899999999999888887776667778888887777776655 4666777777777777777654
Q ss_pred h-hhCCCCCCcEEEcccCCC
Q 010182 364 A-TIGKLTNLEILNVSSNFT 382 (516)
Q Consensus 364 ~-~l~~l~~L~~L~L~~n~~ 382 (516)
. .+..+++|+.|++++|.+
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCB
T ss_pred HHHHhCCCCCCEEEeeCCce
Confidence 3 556666666666666643
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=5.1e-20 Score=199.21 Aligned_cols=174 Identities=24% Similarity=0.319 Sum_probs=103.3
Q ss_pred cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeC
Q 010182 228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDA 307 (516)
Q Consensus 228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L 307 (516)
..+++|+.|++++|.+..++ .+..+++|+.|+|++|.|+.++. +..+++|+.|+|++|.+..++ .+..+++|+.|+|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 44556666666666666554 35566666666666666666554 556666666666666666553 4556666666666
Q ss_pred CCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCc
Q 010182 308 SFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKEL 387 (516)
Q Consensus 308 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l 387 (516)
++|.++.++. +..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.+++++. +..+++|+.|+|++|.+ ..+
T Consensus 117 s~N~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i--~~l 190 (605)
T 1m9s_A 117 EHNGISDING--LVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI--SDL 190 (605)
T ss_dssp TTSCCCCCGG--GGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC--CBC
T ss_pred cCCCCCCCcc--ccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCC--CCC
Confidence 6666665532 23466666666666666655 455566666666666666666544 55666666666666633 233
Q ss_pred chhhcCCCCccEEeccCCCCCCch
Q 010182 388 PETFGELTNLKELDLSNNQIHALP 411 (516)
Q Consensus 388 ~~~l~~l~~L~~L~L~~n~i~~lp 411 (516)
+ .+..+++|+.|+|++|.++..|
T Consensus 191 ~-~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 191 R-ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp G-GGTTCTTCSEEECCSEEEECCC
T ss_pred h-HHccCCCCCEEEccCCcCcCCc
Confidence 2 4556666666666666655443
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=2.9e-19 Score=180.95 Aligned_cols=215 Identities=26% Similarity=0.286 Sum_probs=125.8
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCC-Ccc-hhhcCCCCccE-EEeeCCCCCCcc-hhhcCCCCCcEE
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLE-VIP-DSIAGLVNLEE-LNLASNLLETLP-DSIGLLDNLKIL 282 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~-~l~-~~l~~l~~L~~-L~Ls~n~l~~l~-~~l~~l~~L~~L 282 (516)
.++++|+|++|.|+.+|. +|..+++|++|+|++|.+. .++ ..|.++++|++ +.+.+|+|+.++ ..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 456666666666666654 4666666666666666654 343 34566666554 445556666653 355666666666
Q ss_pred EeeCCCCCCCCc-ccccCCCCcEEeCCC-CCCCcCChhhhhcCC-CCcEEecCCCCCccccchhcCCCCCcEEEcc-CCC
Q 010182 283 DVSGNKLSALPD-SISHCRSLVELDASF-NRLAYLPTNIGHELV-NLQKLLVPLNKIRFLPTSIGEMASLRHLDAH-FNE 358 (516)
Q Consensus 283 ~Ls~n~l~~l~~-~l~~l~~L~~L~L~~-n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls-~n~ 358 (516)
++++|.++.++. .+....++..|++.+ +.+..++...+..+. .++.|++++|+|+.++..+....+|++|+++ +|.
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~ 189 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCc
Confidence 666666665543 233445555666543 456666555444443 4666677777766666655555666666665 356
Q ss_pred CCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC-CCCCchhhhcCCCcccEEeccc
Q 010182 359 LHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNN-QIHALPNTFGRLDKLIKLNLEE 427 (516)
Q Consensus 359 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n-~i~~lp~~l~~l~~L~~L~L~~ 427 (516)
++.+|. .+..+++|+.|++++|. +..+|. ..+.+|+.|.+.++ .++.+| .+..+++|+.+++.+
T Consensus 190 l~~i~~~~f~~l~~L~~LdLs~N~--l~~lp~--~~~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 190 LEELPNDVFHGASGPVILDISRTR--IHSLPS--YGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp CCCCCTTTTTTEECCSEEECTTSC--CCCCCS--SSCTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred ccCCCHHHhccCcccchhhcCCCC--cCccCh--hhhccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 666654 45666667777777663 344443 23445555555444 455665 356666677666654
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.2e-18 Score=176.50 Aligned_cols=219 Identities=20% Similarity=0.195 Sum_probs=175.7
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCC-cch-hhcCCCCCcE-EEeeC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLET-LPD-SIGLLDNLKI-LDVSG 286 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~-l~~-~l~~l~~L~~-L~Ls~ 286 (516)
+++++++++++.+|..+ .++++.|+|++|+|+.+|. +|.++++|++|+|++|.+.. ++. .|.+++++.. +.+++
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 57899999999999866 3789999999999999975 68999999999999999864 554 6788888775 66778
Q ss_pred CCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCC-CCCccccc-hhcCC-CCCcEEEccCCCCCCc
Q 010182 287 NKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPL-NKIRFLPT-SIGEM-ASLRHLDAHFNELHGL 362 (516)
Q Consensus 287 n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~-n~l~~l~~-~l~~l-~~L~~L~Ls~n~l~~l 362 (516)
|+++.+ +..+..+++|++|++++|.++.++...+....++..|++.+ +.+..++. .+..+ ..++.|++++|+++.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 999988 46688899999999999999999887776677888999865 57887765 34444 4689999999999999
Q ss_pred chhhCCCCCCcEEEcccCCCCCCCcch-hhcCCCCccEEeccCCCCCCchh-hhcCCCcccEEecccCCCCCCC
Q 010182 363 PATIGKLTNLEILNVSSNFTDMKELPE-TFGELTNLKELDLSNNQIHALPN-TFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 363 ~~~l~~l~~L~~L~L~~n~~~~~~l~~-~l~~l~~L~~L~L~~n~i~~lp~-~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
+.......+|+.|++.+|. .+..+|. .|..+++|+.|+|++|+|+.+|. .+.++++|+.+++ +.++..|
T Consensus 170 ~~~~f~~~~L~~l~l~~~n-~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP 240 (350)
T 4ay9_X 170 HNSAFNGTQLDELNLSDNN-NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP 240 (350)
T ss_dssp CTTSSTTEEEEEEECTTCT-TCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCC
T ss_pred ChhhccccchhHHhhccCC-cccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCC
Confidence 8877777899999998532 3456664 67899999999999999999984 4544444444333 3455554
No 98
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=5.6e-19 Score=191.06 Aligned_cols=194 Identities=21% Similarity=0.277 Sum_probs=168.0
Q ss_pred CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCC
Q 010182 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRL 312 (516)
Q Consensus 233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l 312 (516)
+..+.+..+.+..+.. +..+++|+.|++++|.|..++ .+..+++|+.|+|++|.+..++. +..+++|+.|+|++|.+
T Consensus 23 l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 4445566666665532 567889999999999999987 58899999999999999999876 88999999999999999
Q ss_pred CcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhc
Q 010182 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFG 392 (516)
Q Consensus 313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~ 392 (516)
+.++. +..+++|+.|+|++|.+..+ ..+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|.+ ..++. +.
T Consensus 100 ~~l~~--l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l--~~~~~-l~ 172 (605)
T 1m9s_A 100 KDLSS--LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI--SDIVP-LA 172 (605)
T ss_dssp CCCTT--STTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC--CCCGG-GT
T ss_pred CCChh--hccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC--CCchh-hc
Confidence 98763 44699999999999999987 4688999999999999999998 6788999999999999965 45544 89
Q ss_pred CCCCccEEeccCCCCCCchhhhcCCCcccEEecccCCCCCCCHHH
Q 010182 393 ELTNLKELDLSNNQIHALPNTFGRLDKLIKLNLEENPMVIPPVEV 437 (516)
Q Consensus 393 ~l~~L~~L~L~~n~i~~lp~~l~~l~~L~~L~L~~N~l~~~~~~~ 437 (516)
.+++|+.|+|++|+|+.++ .+..+++|+.|+|++|++...+...
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINH 216 (605)
T ss_dssp TCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred cCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccc
Confidence 9999999999999999986 6899999999999999998776543
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=5.3e-19 Score=171.75 Aligned_cols=163 Identities=23% Similarity=0.299 Sum_probs=93.2
Q ss_pred CccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC
Q 010182 209 SLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK 288 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~ 288 (516)
.+..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.|+.++. +..+++|++|++++|.
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc
Confidence 3445566666666665 4566677777777777777665 56667777777777777776665 6667777777777777
Q ss_pred CCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCC
Q 010182 289 LSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGK 368 (516)
Q Consensus 289 l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~ 368 (516)
++.++.... ++|++|++++|.++.++. +..+++|+.|++++|+++.++ .+..+++|++|++++|.++++ ..+..
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l~~ 170 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGLTR 170 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCCSBSGG--GTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTSTT
T ss_pred cCCcCcccc--CcccEEEccCCccCCChh--hcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHhcc
Confidence 666643222 566666666666655432 223455555555555544443 344444444444444444444 33334
Q ss_pred CCCCcEEEcccC
Q 010182 369 LTNLEILNVSSN 380 (516)
Q Consensus 369 l~~L~~L~L~~n 380 (516)
+++|+.|++++|
T Consensus 171 l~~L~~L~l~~N 182 (263)
T 1xeu_A 171 LKKVNWIDLTGQ 182 (263)
T ss_dssp CCCCCEEEEEEE
T ss_pred CCCCCEEeCCCC
Confidence 444444444444
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=9.1e-19 Score=170.09 Aligned_cols=171 Identities=23% Similarity=0.310 Sum_probs=120.2
Q ss_pred CCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCC
Q 010182 230 IAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASF 309 (516)
Q Consensus 230 l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~ 309 (516)
+.++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 445666777888888776 5677788888888888888776 57778888888888888887765 77788888888888
Q ss_pred CCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcch
Q 010182 310 NRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPE 389 (516)
Q Consensus 310 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~ 389 (516)
|.++.++.... ++|+.|++++|.++.++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.+. ++ .
T Consensus 95 N~l~~l~~~~~---~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~--~~-~ 166 (263)
T 1xeu_A 95 NRLKNLNGIPS---ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEIT--NT-G 166 (263)
T ss_dssp SCCSCCTTCCC---SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCC--BC-T
T ss_pred CccCCcCcccc---CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCc--ch-H
Confidence 88777665332 67777777777777663 4666677777777777776664 4666666777777766443 22 4
Q ss_pred hhcCCCCccEEeccCCCCCCch
Q 010182 390 TFGELTNLKELDLSNNQIHALP 411 (516)
Q Consensus 390 ~l~~l~~L~~L~L~~n~i~~lp 411 (516)
.+..+++|+.|++++|.++..|
T Consensus 167 ~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp TSTTCCCCCEEEEEEEEEECCC
T ss_pred HhccCCCCCEEeCCCCcccCCc
Confidence 5566666666666666666554
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=6e-18 Score=156.82 Aligned_cols=150 Identities=19% Similarity=0.239 Sum_probs=89.1
Q ss_pred cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC-CCcccccCCCCcEEe
Q 010182 228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELD 306 (516)
Q Consensus 228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~ 306 (516)
..+++|+.|++++|.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++. .+..+..+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34566667777777776665 5666677777777777666554 46666777777777776664 455566666677776
Q ss_pred CCCCCCCcCChhhhhcCCCCcEEecCCCC-CccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCC
Q 010182 307 ASFNRLAYLPTNIGHELVNLQKLLVPLNK-IRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNF 381 (516)
Q Consensus 307 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~ 381 (516)
+++|.++......+..+++|++|++++|. ++.++ .+..+++|++|++++|.+++++ .+..+++|+.|++++|.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 66666654333333345555555555554 55443 4555555555555555555544 44455555555555553
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=8e-18 Score=157.19 Aligned_cols=145 Identities=28% Similarity=0.438 Sum_probs=76.0
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK 288 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~ 288 (516)
+.+++++++++.+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++. .|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35566666666555433 3456666666666665533 34556666666666666665544 34555566666666665
Q ss_pred CCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCC
Q 010182 289 LSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFN 357 (516)
Q Consensus 289 l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n 357 (516)
++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 5555432 34555555555555555555544444444444444444444444332 333444444444444
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=5.7e-18 Score=158.20 Aligned_cols=176 Identities=25% Similarity=0.358 Sum_probs=150.2
Q ss_pred cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCCC
Q 010182 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFNR 311 (516)
Q Consensus 234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~ 311 (516)
+.++++++.++.+|..+ .++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56888899999888655 4589999999999998876 578899999999999999988654 6789999999999999
Q ss_pred CCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCCCCCCCcch
Q 010182 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNFTDMKELPE 389 (516)
Q Consensus 312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~ 389 (516)
++.++...+..+++|++|++++|.+..++.. +..+++|++|++++|.+++++. .+..+++|+.|++++|.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~------- 160 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW------- 160 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB-------
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe-------
Confidence 9999888777899999999999999988764 6889999999999999999765 478899999999999943
Q ss_pred hhcCCCCccEEeccCCCCC-CchhhhcCCCc
Q 010182 390 TFGELTNLKELDLSNNQIH-ALPNTFGRLDK 419 (516)
Q Consensus 390 ~l~~l~~L~~L~L~~n~i~-~lp~~l~~l~~ 419 (516)
.+.+++|+.|+++.|+++ .+|..++.++.
T Consensus 161 -~~~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 161 -DCTCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp -CCCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred -ecCCCCHHHHHHHHHhCCceeeccCccccC
Confidence 245678999999999888 67877776654
No 104
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=4.4e-19 Score=191.89 Aligned_cols=41 Identities=15% Similarity=0.039 Sum_probs=31.5
Q ss_pred HhhhcccccccccCCCCCCCCcc-ccccccEEEccCCccccc
Q 010182 460 EERRSMLKLEGNNNEGEQMPTGW-LTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 460 ~~~l~~l~L~~N~i~~~~~~~~~-~~~~l~~l~l~~N~ls~~ 500 (516)
.++++.|++++|.+++..++.++ ..++++.|++++|++++.
T Consensus 487 ~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 487 CPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 46788899999988766555443 467899999999998875
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.75 E-value=3.4e-19 Score=192.75 Aligned_cols=118 Identities=9% Similarity=-0.064 Sum_probs=64.7
Q ss_pred CCCCcEEEcc----CCCCCC------cchhhCCCCCCcEEEcccCC--CCCCCcchhhcCCCCccEEeccCCCCCC--ch
Q 010182 346 MASLRHLDAH----FNELHG------LPATIGKLTNLEILNVSSNF--TDMKELPETFGELTNLKELDLSNNQIHA--LP 411 (516)
Q Consensus 346 l~~L~~L~Ls----~n~l~~------l~~~l~~l~~L~~L~L~~n~--~~~~~l~~~l~~l~~L~~L~L~~n~i~~--lp 411 (516)
+++|++|+++ .|.+++ ++..+..+++|+.|+++.|. +....+......+++|++|++++|++++ ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 4455555554 334443 22224445566666664321 2222222222346667777777777764 34
Q ss_pred hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCc
Q 010182 412 NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTG 481 (516)
Q Consensus 412 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~ 481 (516)
..+..+++|++|+|++|++++.... ......++++.++|++|++++......
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~------------------~~~~~l~~L~~L~ls~n~it~~~~~~l 533 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIA------------------AAVTKLPSLRYLWVQGYRASMTGQDLM 533 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHH------------------HHHHHCSSCCEEEEESCBCCTTCTTGG
T ss_pred HHHhcCcccCeeeccCCCCcHHHHH------------------HHHHhcCccCeeECcCCcCCHHHHHHH
Confidence 5556677777777777775421111 011245678889999999887755444
No 106
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.8e-17 Score=152.33 Aligned_cols=149 Identities=20% Similarity=0.280 Sum_probs=131.6
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cchhhcCCCCCcEEEeeC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~Ls~ 286 (516)
+++++|++++|.++.++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.++. .+..++.+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 67999999999999988 6899999999999999887764 78899999999999999995 567889999999999999
Q ss_pred CCCCC-CCcccccCCCCcEEeCCCCC-CCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182 287 NKLSA-LPDSISHCRSLVELDASFNR-LAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 287 n~l~~-l~~~l~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
|.++. .+..+..+++|++|++++|. ++.++ .+..+++|+.|++++|.+..++ .+..+++|++|++++|.+.+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcccCC
Confidence 99985 56778999999999999998 88886 3556999999999999999886 78899999999999998864
No 107
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.8e-17 Score=168.44 Aligned_cols=173 Identities=27% Similarity=0.314 Sum_probs=104.6
Q ss_pred cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhc-CCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCC
Q 010182 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIG-LLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFN 310 (516)
Q Consensus 234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~-~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n 310 (516)
+.++++++.++.+|..+. ..++.|+|++|.|+.++. .+. .+++|++|+|++|.|+.++ ..+..+++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456666666666665443 346666666666665544 233 5666666666666666553 33555555666666665
Q ss_pred CCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCCCCCCCcch
Q 010182 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNFTDMKELPE 389 (516)
Q Consensus 311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~ 389 (516)
.++.++...+..++ +|++|+|++|.++.+ +..+..+++|+.|+|++|.+ ..+|.
T Consensus 99 ~l~~~~~~~~~~l~-----------------------~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l--~~l~~ 153 (361)
T 2xot_A 99 HLHTLDEFLFSDLQ-----------------------ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQI--SRFPV 153 (361)
T ss_dssp CCCEECTTTTTTCT-----------------------TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC--CSCCG
T ss_pred cCCcCCHHHhCCCc-----------------------CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcC--CeeCH
Confidence 55555544444444 455555555555443 33455555555555555532 33333
Q ss_pred hh----cCCCCccEEeccCCCCCCch-hhhcCCCc--ccEEecccCCCCCC
Q 010182 390 TF----GELTNLKELDLSNNQIHALP-NTFGRLDK--LIKLNLEENPMVIP 433 (516)
Q Consensus 390 ~l----~~l~~L~~L~L~~n~i~~lp-~~l~~l~~--L~~L~L~~N~l~~~ 433 (516)
.+ ..+++|+.|+|++|+|+.+| ..+..++. |+.|+|++|++...
T Consensus 154 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 154 ELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp GGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred HHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 32 46788889999999999887 67777877 48899999998754
No 108
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.72 E-value=8.9e-17 Score=152.64 Aligned_cols=144 Identities=30% Similarity=0.423 Sum_probs=71.5
Q ss_pred EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCCC
Q 010182 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNRL 312 (516)
Q Consensus 235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~l 312 (516)
.++++++.++.+|..+. ++|++|+|++|.|+.+ +..|..+++|++|+|++|.++.++. .+..+++|+.|++++|.+
T Consensus 23 ~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 23 TVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp EEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 34444444444443332 4455555555555444 2344445555555555555554432 234455555555555555
Q ss_pred CcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccC
Q 010182 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSN 380 (516)
Q Consensus 313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n 380 (516)
+.++...+..+++|+.|++++|++..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 5555444444555555555555555555555555555555555555555432 3444555555555555
No 109
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=4.1e-20 Score=198.73 Aligned_cols=181 Identities=22% Similarity=0.256 Sum_probs=116.2
Q ss_pred cCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCC--------------CCCCCcccccCCCCcEEe-CCCCCCCcC
Q 010182 251 AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNK--------------LSALPDSISHCRSLVELD-ASFNRLAYL 315 (516)
Q Consensus 251 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~--------------l~~l~~~l~~l~~L~~L~-L~~n~l~~l 315 (516)
..+++|+.|+|++|.++.+|..++.+++|+.|++++|. ...+|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34555666666666666666666666666666654442 112344555666666666 454443332
Q ss_pred Chhhhh-------cCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcc
Q 010182 316 PTNIGH-------ELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP 388 (516)
Q Consensus 316 ~~~~~~-------~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~ 388 (516)
+...+. ....|+.|++++|.++.+|. ++.+++|+.|++++|.++.+|..++.+++|+.|+|++|.+ .++|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l--~~lp 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL--ENVD 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCC--CCCG
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCC--CCCc
Confidence 221100 12257777777777777765 7777777777777777777777777777777777777744 3466
Q ss_pred hhhcCCCCccEEeccCCCCCCc--hhhhcCCCcccEEecccCCCCCCCH
Q 010182 389 ETFGELTNLKELDLSNNQIHAL--PNTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 389 ~~l~~l~~L~~L~L~~n~i~~l--p~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.++.+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|+++..+.
T Consensus 503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 677777777777777777776 6777777777777777777766543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.72 E-value=7.9e-17 Score=152.04 Aligned_cols=151 Identities=24% Similarity=0.404 Sum_probs=116.8
Q ss_pred cEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCC
Q 010182 280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNE 358 (516)
Q Consensus 280 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~ 358 (516)
+.++++++.++.+|..+. ++|+.|++++|.++.++...+..+++|+.|++++|.+..+ +..+..+++|++|+|++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 456666666666665544 5677777777777777666666677777777777777765 5677788888888888888
Q ss_pred CCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCC
Q 010182 359 LHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 359 l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
++.+|. .+..+++|+.|+|++|.+. ...+..+..+++|+.|+|++|+|+.++ ..+..+++|+.|+|++|++...
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCccCHhHccCCCCCCEEECCCCCCC-EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 888765 4577888999999998655 233567888999999999999999887 5688999999999999998753
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.71 E-value=2.5e-17 Score=167.37 Aligned_cols=172 Identities=27% Similarity=0.328 Sum_probs=146.5
Q ss_pred ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhc-CCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIA-GLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG 286 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~-~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~ 286 (516)
-+.+++++++++.+|..+. ..++.|+|++|.++.++. .+. .+++|++|+|++|.|+.++. .|..+++|++|+|++
T Consensus 20 ~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3689999999999997554 569999999999998855 465 89999999999999998874 689999999999999
Q ss_pred CCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchh----cCCCCCcEEEccCCCCCC
Q 010182 287 NKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSI----GEMASLRHLDAHFNELHG 361 (516)
Q Consensus 287 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l----~~l~~L~~L~Ls~n~l~~ 361 (516)
|.|+.++. .+..+++|+.|++++|.++.++...+..+++|+.|++++|.+..+|..+ ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 99998854 5788999999999999999998887888999999999999999888765 568899999999999998
Q ss_pred cch-hhCCCCC--CcEEEcccCCCC
Q 010182 362 LPA-TIGKLTN--LEILNVSSNFTD 383 (516)
Q Consensus 362 l~~-~l~~l~~--L~~L~L~~n~~~ 383 (516)
++. .+..++. ++.|+|++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 763 5666665 478899888543
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=5.4e-17 Score=153.19 Aligned_cols=145 Identities=26% Similarity=0.407 Sum_probs=73.7
Q ss_pred EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCCC
Q 010182 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRL 312 (516)
Q Consensus 235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l 312 (516)
.++++++.++.+|..+. ++|++|++++|.|+.++. .|..+++|++|+|++|.++.+ +..+..+++|++|++++|.+
T Consensus 15 ~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 34444444444443332 344444444444444433 344444555555555544433 34444455555555555555
Q ss_pred CcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCcch-hhCCCCCCcEEEcccCC
Q 010182 313 AYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGLPA-TIGKLTNLEILNVSSNF 381 (516)
Q Consensus 313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~ 381 (516)
+.++...+..+++|+.|++++|.+..+ +..+..+++|++|++++|.++.++. .+..+++|+.|+|++|.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCC
Confidence 555554444455555555555555544 2345555666666666666666443 45556666666666663
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.71 E-value=1.2e-16 Score=151.67 Aligned_cols=153 Identities=27% Similarity=0.386 Sum_probs=113.9
Q ss_pred CCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccC
Q 010182 278 NLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHF 356 (516)
Q Consensus 278 ~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~ 356 (516)
..+.++.+++.++.+|..+. ++|+.|++++|.++.++...+..+++|+.|++++|.+..++. .+..+++|++|++++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 34556666666666665443 566666666666666655555556677777777777766654 346777888888888
Q ss_pred CCCCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182 357 NELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 357 n~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
|.++.++. .+..+++|+.|+|++|.+ ..+|..+..+++|+.|+|++|+|+.++ ..+..+++|+.|++++|++....
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l--~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKL--TELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC--CSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CcCCccChhHhCcchhhCeEeccCCcc--cccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 88887654 467888888999988854 477888888999999999999999887 67889999999999999998553
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1.3e-16 Score=150.53 Aligned_cols=151 Identities=27% Similarity=0.340 Sum_probs=111.6
Q ss_pred cEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCC-hhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCC
Q 010182 280 KILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLP-TNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFN 357 (516)
Q Consensus 280 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n 357 (516)
+.+++++|.++.+|..+. ..+++|++++|.++.++ ...+..+++|+.|++++|.++.++. .+..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 456666666666655443 34466666666666653 3444557777777777777776654 5777788888888888
Q ss_pred CCCCcch-hhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCCc-hhhhcCCCcccEEecccCCCCCC
Q 010182 358 ELHGLPA-TIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHAL-PNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 358 ~l~~l~~-~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~l-p~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
.++.++. .+..+++|++|+|++|.+. ...|..+..+++|+.|+|++|+|+.+ |..+..+++|+.|+|++|++...
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCC-CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCC-eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8888644 5788888899999888654 23366788899999999999999988 68899999999999999999754
No 115
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=1.4e-16 Score=150.37 Aligned_cols=144 Identities=25% Similarity=0.352 Sum_probs=70.3
Q ss_pred EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcc--hhhcCCCCCcEEEeeCCCCCCCCc-ccccCCCCcEEeCCCCC
Q 010182 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLP--DSIGLLDNLKILDVSGNKLSALPD-SISHCRSLVELDASFNR 311 (516)
Q Consensus 235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~--~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~L~~n~ 311 (516)
.+++++|.++.+|..+. ..+++|++++|.|+.++ ..|..+++|++|++++|.|+.++. .+..+++|++|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 45555555555544332 23445555555555442 124455555555555555554432 44555555555555555
Q ss_pred CCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccC
Q 010182 312 LAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSN 380 (516)
Q Consensus 312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n 380 (516)
++.++...+..+++|++|++++|.+..+ +..+..+++|++|++++|.++++ |..+..+++|+.|++++|
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc
Confidence 5555544444455555555555554443 23344445555555555555543 334444444555554444
No 116
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.69 E-value=1.1e-18 Score=188.75 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=92.2
Q ss_pred CCCCcEEecCCCCCcc--ccchhcCCCCCcEEEccCCCCCC--cchhhCCCCCCcEEEccc---------CCCCCCCcch
Q 010182 323 LVNLQKLLVPLNKIRF--LPTSIGEMASLRHLDAHFNELHG--LPATIGKLTNLEILNVSS---------NFTDMKELPE 389 (516)
Q Consensus 323 l~~L~~L~L~~n~l~~--l~~~l~~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~---------n~~~~~~l~~ 389 (516)
+++|+.|++++|.++. +...+..+++|++|++++| ++. ++.....+++|+.|++.+ +.++...+..
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 4556666666555442 2222345556666666655 222 222223456666666632 2222222222
Q ss_pred hhcCCCCccEEeccCCCCCCch-hhh-cCCCcccEEecc--c----CCCCCCCHHHHhchhHHHHHH------------H
Q 010182 390 TFGELTNLKELDLSNNQIHALP-NTF-GRLDKLIKLNLE--E----NPMVIPPVEVVKEGVGAVKTF------------M 449 (516)
Q Consensus 390 ~l~~l~~L~~L~L~~n~i~~lp-~~l-~~l~~L~~L~L~--~----N~l~~~~~~~~~~~~~~~~~~------------~ 449 (516)
....+++|+.|.+..|.++... ..+ ..+++|+.|+++ + |.++..+... ++..+... +
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~---~~~~l~~~~~~L~~L~L~~~l 443 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI---GFGAIVEHCKDLRRLSLSGLL 443 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH---HHHHHHHHCTTCCEEECCSSC
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh---HHHHHHhhCCCccEEeecCcc
Confidence 2234677777777777776432 333 357888888888 4 5565443211 11111000 0
Q ss_pred hhhhhhHhHH-HhhhcccccccccCCCCCCCCc-cccccccEEEccCCccccc
Q 010182 450 AKRWLDILLE-EERRSMLKLEGNNNEGEQMPTG-WLTRSTSWLKTVGENVSGI 500 (516)
Q Consensus 450 ~~~~l~~~~~-~~~l~~l~L~~N~i~~~~~~~~-~~~~~l~~l~l~~N~ls~~ 500 (516)
.+.....+.. .++++.++|++|.+++..+... ...++|+.|++++|.+++.
T Consensus 444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 0111112222 5678889999998877655544 3467899999999988643
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=3.7e-19 Score=191.21 Aligned_cols=193 Identities=19% Similarity=0.209 Sum_probs=160.4
Q ss_pred cCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCC--------------CCCcchhhcCCCCCcEEE-eeCCCCCCC
Q 010182 228 GRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNL--------------LETLPDSIGLLDNLKILD-VSGNKLSAL 292 (516)
Q Consensus 228 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~--------------l~~l~~~l~~l~~L~~L~-Ls~n~l~~l 292 (516)
..+++|+.|+|++|.++.+|..++.+++|+.|++++|. ...+|..++.+++|+.|+ ++.|.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 45788999999999999999999999999999997663 224456778888888888 566544322
Q ss_pred Cc------cccc--CCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcch
Q 010182 293 PD------SISH--CRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPA 364 (516)
Q Consensus 293 ~~------~l~~--l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~ 364 (516)
+. .+.. ...|+.|++++|.++.+|. +..+++|+.|++++|.++.+|..++.+++|++|+|++|.++++|
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp- 502 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD- 502 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-
Confidence 11 1111 2359999999999999986 55699999999999999999999999999999999999999998
Q ss_pred hhCCCCCCcEEEcccCCCCCCCc--chhhcCCCCccEEeccCCCCCCchh----hhcCCCcccEEec
Q 010182 365 TIGKLTNLEILNVSSNFTDMKEL--PETFGELTNLKELDLSNNQIHALPN----TFGRLDKLIKLNL 425 (516)
Q Consensus 365 ~l~~l~~L~~L~L~~n~~~~~~l--~~~l~~l~~L~~L~L~~n~i~~lp~----~l~~l~~L~~L~L 425 (516)
.++.+++|+.|+|++|.+. ++ |..++.+++|+.|+|++|.++.+|+ .+..+++|+.|++
T Consensus 503 ~l~~l~~L~~L~Ls~N~l~--~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 503 GVANLPRLQELLLCNNRLQ--QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGTTCSSCCEEECCSSCCC--SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ccCCCCCCcEEECCCCCCC--CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8999999999999999654 44 8899999999999999999998764 3445899999975
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2.3e-17 Score=182.62 Aligned_cols=216 Identities=21% Similarity=0.228 Sum_probs=115.9
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEE-----EeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEE
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLM-----SLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKIL 282 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L-----~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L 282 (516)
+.++.|+|.++.+...+..+.....|+.+ +++.|.+...+..+..+++|+.|+|++|.+..+|..+..+++|++|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L 252 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRL 252 (727)
T ss_dssp -------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEE
Confidence 56788888888887766544333333333 3334445555678888999999999999999998888899999999
Q ss_pred EeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC-
Q 010182 283 DVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG- 361 (516)
Q Consensus 283 ~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~- 361 (516)
+|++|.|+.+|..+..+++|+.|+|++|.|+.+|..+. .+++|++|+|++|.++.+|..++.+++|++|+|++|.+++
T Consensus 253 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~-~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 253 YLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG-SCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp BCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG-GGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred EeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc-CCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 99999999999889999999999999999998887765 5999999999999999999889999999999999999987
Q ss_pred cchhhCCCC-CCcEEEcccCCCCCCCcchhhcCCCCccEEeccCC--------CCCCc-hhhhcCCCcccEEecccCCCC
Q 010182 362 LPATIGKLT-NLEILNVSSNFTDMKELPETFGELTNLKELDLSNN--------QIHAL-PNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 362 l~~~l~~l~-~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n--------~i~~l-p~~l~~l~~L~~L~L~~N~l~ 431 (516)
+|..+.... .+..|+|++|.+. ..+| ..|+.|++++| .+..+ +..+..+..+....+++|-+.
T Consensus 332 ~p~~~~~~~~~~~~l~l~~N~l~-~~~p------~~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 332 FLKILTEKSVTGLIFYLRDNRPE-IPLP------HERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCC-CCCC------CC-----------------------------------------CCC
T ss_pred ChHHHhhcchhhhHHhhccCccc-CcCc------cccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 455543332 1234778888654 3333 35667777776 22222 234456667777788888774
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.67 E-value=3.6e-18 Score=184.70 Aligned_cols=204 Identities=14% Similarity=0.058 Sum_probs=90.8
Q ss_pred CCCCCcEEEeeCCCCCC--CCcccccCCCCcEEeCCCCCCCc-CChhhhhcCCCCcEEecC---------CCCCcc--cc
Q 010182 275 LLDNLKILDVSGNKLSA--LPDSISHCRSLVELDASFNRLAY-LPTNIGHELVNLQKLLVP---------LNKIRF--LP 340 (516)
Q Consensus 275 ~l~~L~~L~Ls~n~l~~--l~~~l~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L~L~---------~n~l~~--l~ 340 (516)
.+++|++|++++|.++. +...+..+++|++|++++| ++. ....+...+++|++|++. .+.++. +.
T Consensus 287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~ 365 (594)
T 2p1m_B 287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV 365 (594)
T ss_dssp HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence 45566666666665441 1222344556666666555 221 111122235556666552 223331 11
Q ss_pred chhcCCCCCcEEEccCCCCCCc-chhh-CCCCCCcEEEcc--c----CCCC----CCCcchhhcCCCCccEEeccCCCCC
Q 010182 341 TSIGEMASLRHLDAHFNELHGL-PATI-GKLTNLEILNVS--S----NFTD----MKELPETFGELTNLKELDLSNNQIH 408 (516)
Q Consensus 341 ~~l~~l~~L~~L~Ls~n~l~~l-~~~l-~~l~~L~~L~L~--~----n~~~----~~~l~~~l~~l~~L~~L~L~~n~i~ 408 (516)
.....+++|++|.+++|.+++. ...+ ..+++|+.|+++ + +.++ ..+++..+..+++|+.|+|++ .++
T Consensus 366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~ 444 (594)
T 2p1m_B 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT 444 (594)
T ss_dssp HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence 1112345566665555555541 1122 235566666665 2 2222 012222344555666666655 444
Q ss_pred Cc-hhhhcC-CCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcc-ccc
Q 010182 409 AL-PNTFGR-LDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGW-LTR 485 (516)
Q Consensus 409 ~l-p~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~-~~~ 485 (516)
+. +..+.. +++|+.|+|++|.+++.+...+ ....++++.|+|++|.+++..+.... ..+
T Consensus 445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l------------------~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~ 506 (594)
T 2p1m_B 445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV------------------LSGCDSLRKLEIRDCPFGDKALLANASKLE 506 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH------------------HHHCTTCCEEEEESCSCCHHHHHHTGGGGG
T ss_pred HHHHHHHHHhchhccEeeccCCCCcHHHHHHH------------------HhcCCCcCEEECcCCCCcHHHHHHHHHhCC
Confidence 22 123332 5566666666665532211111 01234566666666666443332222 245
Q ss_pred cccEEEccCCccc
Q 010182 486 STSWLKTVGENVS 498 (516)
Q Consensus 486 ~l~~l~l~~N~ls 498 (516)
+++.|++++|+++
T Consensus 507 ~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 507 TMRSLWMSSCSVS 519 (594)
T ss_dssp GSSEEEEESSCCB
T ss_pred CCCEEeeeCCCCC
Confidence 5666666666553
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=3.6e-16 Score=140.79 Aligned_cols=133 Identities=22% Similarity=0.198 Sum_probs=83.9
Q ss_pred CCCccEEEeecCCCC--cchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cchhhcCCCCCcEEE
Q 010182 207 GKSLEQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLKILD 283 (516)
Q Consensus 207 ~~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~ 283 (516)
.++++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 356777777777766 6666666667777777777776666 566666777777777777665 555555566777777
Q ss_pred eeCCCCCCCC--cccccCCCCcEEeCCCCCCCcCCh---hhhhcCCCCcEEecCCCCCcccc
Q 010182 284 VSGNKLSALP--DSISHCRSLVELDASFNRLAYLPT---NIGHELVNLQKLLVPLNKIRFLP 340 (516)
Q Consensus 284 Ls~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~~n~l~~l~ 340 (516)
+++|.++.++ ..+..+++|++|++++|.++.++. ..+..+++|+.|++++|.+..+|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 7777666654 456666666666666666665554 33334555555555555554443
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.6e-16 Score=139.02 Aligned_cols=133 Identities=26% Similarity=0.213 Sum_probs=85.4
Q ss_pred CCCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC-CCcccccCCCCcEEe
Q 010182 230 IAGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELD 306 (516)
Q Consensus 230 l~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~ 306 (516)
.++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 466777777777777 6666667777777777777777766 566677777777777777776 455555567777777
Q ss_pred CCCCCCCcCCh-hhhhcCCCCcEEecCCCCCccccc----hhcCCCCCcEEEccCCCCCCcc
Q 010182 307 ASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRFLPT----SIGEMASLRHLDAHFNELHGLP 363 (516)
Q Consensus 307 L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~l~~----~l~~l~~L~~L~Ls~n~l~~l~ 363 (516)
+++|.++.++. ..+..+++|+.|++++|.+..++. .+..+++|++|++++|.+..+|
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 77776666542 233345556666666665555544 4455555555555555555443
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.63 E-value=2.4e-16 Score=174.35 Aligned_cols=147 Identities=26% Similarity=0.304 Sum_probs=52.3
Q ss_pred CCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCC----------CCCCcccccCCCCcEEeCCCCCCCcCChhhhhcC
Q 010182 254 VNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKL----------SALPDSISHCRSLVELDASFNRLAYLPTNIGHEL 323 (516)
Q Consensus 254 ~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l----------~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l 323 (516)
++++.|+|.+|.+...+..+ |+.++|+.|.| ...+..+..+.+|+.|+|++|.+..++..++ .+
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l 246 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KY 246 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG-GC
T ss_pred CccceEEeeCCCCCcchhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CC
Confidence 56788888888888765543 33344444433 3233444455555555555555555554444 24
Q ss_pred CCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEecc
Q 010182 324 VNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLS 403 (516)
Q Consensus 324 ~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~ 403 (516)
++|+.|+|++|.++.+|..++.+++|++|+|++|.++.+|..+..+++|++|+|++|.+ ..+|..++.+++|+.|+|+
T Consensus 247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l--~~lp~~~~~l~~L~~L~L~ 324 (727)
T 4b8c_D 247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMV--TTLPWEFGNLCNLQFLGVE 324 (727)
T ss_dssp CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCC--CCCCSSTTSCTTCCCEECT
T ss_pred CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCC--CccChhhhcCCCccEEeCC
Confidence 55555555555554444444444445555555544444444444444444444444422 2344444444444444444
Q ss_pred CCCCC
Q 010182 404 NNQIH 408 (516)
Q Consensus 404 ~n~i~ 408 (516)
+|.|+
T Consensus 325 ~N~l~ 329 (727)
T 4b8c_D 325 GNPLE 329 (727)
T ss_dssp TSCCC
T ss_pred CCccC
Confidence 44444
No 123
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.63 E-value=7.6e-17 Score=164.34 Aligned_cols=228 Identities=16% Similarity=0.120 Sum_probs=107.7
Q ss_pred HHHHHHhhHHHHhhhhhhhhcccCccchhHHHHHHHHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 010182 96 KARIVEIDSELAKSLEGIVHSIRETDVDQFEWRVQLADKEKALR--EDSAKEKNACKKILELDDMHEAYEKMLKEAEERL 173 (516)
Q Consensus 96 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~el~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~~~h~~~~~~~~~~~~~~ 173 (516)
.|+||.+.++.++.|+ .++++.++++..++.+|++...+.... ...++....+.|++++++ +.+.+++.
T Consensus 1 ~FL~GL~~~~~~~~L~-~l~~~~~~~~~~~~l~~lk~~l~~~~~~~~~~~~~lnl~~cl~e~~~-----~~l~~~~~--- 71 (372)
T 3un9_A 1 MLLVGLLSAHNRAVLA-QLGCPIKNLDALENAQAIKKKLGKLGRQVLPPSELLDHLFFHYEFQN-----QRFSAEVL--- 71 (372)
T ss_dssp -------------------------------------------CCCSCHHHHHHHHHHHHHHHT-----HHHHHHHH---
T ss_pred CcccccCCHHHHHHHH-HhccchhHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHhcC-----HHHHHHHH---
Confidence 4899999999999999 667777788888999988865433211 122234556667776655 33333222
Q ss_pred HHHHHHhhcCCCCCCCccccccHHHHHHhHHhhCCCccEEEeecCCCCcc-----hHhhcC-CCCCcEEEeecCCCCCc-
Q 010182 174 VKIYERAENGEEEVPPVREEVNEEVMGLLQEAAGKSLEQVDLSSRGLRFL-----PEAFGR-IAGLRLMSLSNNHLEVI- 246 (516)
Q Consensus 174 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~L~L~~~~l~~l-----~~~~~~-l~~L~~L~Ls~n~l~~l- 246 (516)
+.++.|++++|.++.. ...+.. .++|+.|+|++|.++..
T Consensus 72 ----------------------------------~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~ 117 (372)
T 3un9_A 72 ----------------------------------SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG 117 (372)
T ss_dssp ----------------------------------TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH
T ss_pred ----------------------------------hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH
Confidence 5688899999998732 233332 36888888888888732
Q ss_pred -chhhcCCCCccEEEeeCCCCCCcc-----hhh-cCCCCCcEEEeeCCCCCC-----CCcccccCCCCcEEeCCCCCCCc
Q 010182 247 -PDSIAGLVNLEELNLASNLLETLP-----DSI-GLLDNLKILDVSGNKLSA-----LPDSISHCRSLVELDASFNRLAY 314 (516)
Q Consensus 247 -~~~l~~l~~L~~L~Ls~n~l~~l~-----~~l-~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~l~~ 314 (516)
..-...+++|++|+|++|.|+... ..+ ...++|++|+|++|.|+. ++..+..+++|++|++++|.++.
T Consensus 118 ~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 118 LRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred HHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 112233457788888888777322 222 235667777777776652 33344555666666666665543
Q ss_pred CChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCC
Q 010182 315 LPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMK 385 (516)
Q Consensus 315 l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~ 385 (516)
.... .++..+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.++..
T Consensus 198 ~g~~-------------------~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 198 EGLE-------------------LLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHH-------------------HHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHH-------------------HHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 2111 123445555667777777777765 344555667777777777765533
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.6e-15 Score=133.70 Aligned_cols=124 Identities=23% Similarity=0.226 Sum_probs=85.8
Q ss_pred CCccEEEeecCCCC--cchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCC-cchhhcCCCCCcEEEe
Q 010182 208 KSLEQVDLSSRGLR--FLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLET-LPDSIGLLDNLKILDV 284 (516)
Q Consensus 208 ~~L~~L~L~~~~l~--~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L 284 (516)
++++.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 56777777777776 6666667777777777777777766 666777777777777777776 6666666777777777
Q ss_pred eCCCCCCCC--cccccCCCCcEEeCCCCCCCcCCh---hhhhcCCCCcEEecC
Q 010182 285 SGNKLSALP--DSISHCRSLVELDASFNRLAYLPT---NIGHELVNLQKLLVP 332 (516)
Q Consensus 285 s~n~l~~l~--~~l~~l~~L~~L~L~~n~l~~l~~---~~~~~l~~L~~L~L~ 332 (516)
++|.++.++ ..+..+++|++|++++|.++.++. ..+..+++|+.|+++
T Consensus 96 s~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 96 SGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp TTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 777777653 566667777777777777766655 344456666666554
No 125
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.58 E-value=2.7e-15 Score=136.19 Aligned_cols=129 Identities=22% Similarity=0.270 Sum_probs=62.5
Q ss_pred cCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEe
Q 010182 251 AGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLL 330 (516)
Q Consensus 251 ~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 330 (516)
..+.+|++|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.++.++...+..+++|+.|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 334455555555555554433222222555555555555544 3445555555555555555555444433455555555
Q ss_pred cCCCCCccccc--hhcCCCCCcEEEccCCCCCCcchh----hCCCCCCcEEEcccC
Q 010182 331 VPLNKIRFLPT--SIGEMASLRHLDAHFNELHGLPAT----IGKLTNLEILNVSSN 380 (516)
Q Consensus 331 L~~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l~~~----l~~l~~L~~L~L~~n 380 (516)
+++|.++.++. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 55555544443 444445555555555554444332 444444444444444
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.6e-14 Score=133.24 Aligned_cols=125 Identities=24% Similarity=0.381 Sum_probs=76.6
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKL 289 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l 289 (516)
+.+++++++++.+|..+. ++|+.|++++|.++.+|..|..+++|++|+|++|.|+.++. .|..+++|++|+|++|.|
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456666666666665432 46666666666666666666666666666666666665543 456666666666666666
Q ss_pred CCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182 290 SALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337 (516)
Q Consensus 290 ~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 337 (516)
+.++. .+..+++|+.|++++|.++.++...+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 65533 4555666666666666666666555555556666666555543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=6e-15 Score=129.90 Aligned_cols=83 Identities=23% Similarity=0.308 Sum_probs=41.2
Q ss_pred CCCcEEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCC-CCcccccCCCCcEEeC
Q 010182 231 AGLRLMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSA-LPDSISHCRSLVELDA 307 (516)
Q Consensus 231 ~~L~~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~-l~~~l~~l~~L~~L~L 307 (516)
++|+.|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..+..+++|++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l 95 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence 44555555555555 4444445555555555555555544 344445555555555555444 3333333444444444
Q ss_pred CCCCCCc
Q 010182 308 SFNRLAY 314 (516)
Q Consensus 308 ~~n~l~~ 314 (516)
++|.++.
T Consensus 96 s~N~i~~ 102 (149)
T 2je0_A 96 SGNKIKD 102 (149)
T ss_dssp TTSCCCS
T ss_pred CCCcCCC
Confidence 4444443
No 128
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.55 E-value=1.2e-14 Score=145.47 Aligned_cols=56 Identities=18% Similarity=0.246 Sum_probs=29.2
Q ss_pred CCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCC
Q 010182 253 LVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASF 309 (516)
Q Consensus 253 l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~ 309 (516)
+++|+.|+|.+ .++.++. +|..+++|+.+++++|.+..++ ..|..+.++..+....
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 56666666655 5555543 4555666666666666555442 3344444555444433
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=1.1e-14 Score=132.28 Aligned_cols=127 Identities=17% Similarity=0.164 Sum_probs=59.0
Q ss_pred CCccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEeeC
Q 010182 208 KSLEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDVSG 286 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~Ls~ 286 (516)
.+++.|++++|.++.++......++|++|++++|.++.+ ..+..+++|++|++++|.|+.+|.. +..+++|++|++++
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 97 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTN 97 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCS
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCC
Confidence 345555555555554433222222555555555555544 3444555555555555555544432 24455555555555
Q ss_pred CCCCCCCc--ccccCCCCcEEeCCCCCCCcCChh---hhhcCCCCcEEecCCCC
Q 010182 287 NKLSALPD--SISHCRSLVELDASFNRLAYLPTN---IGHELVNLQKLLVPLNK 335 (516)
Q Consensus 287 n~l~~l~~--~l~~l~~L~~L~L~~n~l~~l~~~---~~~~l~~L~~L~L~~n~ 335 (516)
|.++.++. .+..+++|+.|++++|.++.++.. .+..+++|+.|+++.|.
T Consensus 98 N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 98 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 55544443 444444555555555544444432 22234444444444443
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=3.5e-14 Score=131.03 Aligned_cols=125 Identities=30% Similarity=0.467 Sum_probs=89.6
Q ss_pred cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeCCCCCCCC-cccccCCCCcEEeCCCCCC
Q 010182 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSGNKLSALP-DSISHCRSLVELDASFNRL 312 (516)
Q Consensus 234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~l 312 (516)
+++++++|.++.+|..+. ++|++|++++|.|+.+|..|..+++|++|++++|.|+.++ ..+..+++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 567888888887776543 5788888888888877777777888888888888877664 3567777777777777777
Q ss_pred CcCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCC
Q 010182 313 AYLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELH 360 (516)
Q Consensus 313 ~~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~ 360 (516)
+.++...+..+++|+.|++++|.+..++. .+..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77776666667777777777777766654 3555666666666666553
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=2.7e-14 Score=131.59 Aligned_cols=123 Identities=24% Similarity=0.328 Sum_probs=51.6
Q ss_pred EEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch--hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCC
Q 010182 235 LMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD--SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNR 311 (516)
Q Consensus 235 ~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~ 311 (516)
.+++++|.++.+|..+.. +|++|++++|.|+.++. .++.+++|++|+|++|.++.+ |..+..+++|++|++++|.
T Consensus 12 ~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 89 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK 89 (192)
T ss_dssp EEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred EEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence 344444444444433221 44444444444444432 144444444444444444433 3334444444444444444
Q ss_pred CCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCC
Q 010182 312 LAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNEL 359 (516)
Q Consensus 312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l 359 (516)
++.++...+..+++|++|++++|.++.+ |..+..+++|++|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 4444433333344444444444444322 22333344444444444443
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=2.2e-14 Score=132.15 Aligned_cols=127 Identities=21% Similarity=0.266 Sum_probs=113.3
Q ss_pred ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch--hhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeC
Q 010182 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD--SIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSG 286 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~--~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~ 286 (516)
-+.+++++++++.+|..+. .+|++|++++|.++.++. .+..+++|++|+|++|.|+.+ |..|..+++|++|+|++
T Consensus 10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 3789999999999998654 489999999999998865 389999999999999999987 56899999999999999
Q ss_pred CCCCCCCc-ccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcc
Q 010182 287 NKLSALPD-SISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRF 338 (516)
Q Consensus 287 n~l~~l~~-~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 338 (516)
|.|+.++. .+..+++|++|++++|.++.+....+..+++|+.|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 99997754 58889999999999999998877777789999999999999873
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.51 E-value=5.1e-16 Score=143.88 Aligned_cols=128 Identities=25% Similarity=0.323 Sum_probs=87.5
Q ss_pred CccEEEeecC--CCCcchHhhcCCCCCcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEeeC
Q 010182 209 SLEQVDLSSR--GLRFLPEAFGRIAGLRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVSG 286 (516)
Q Consensus 209 ~L~~L~L~~~--~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~ 286 (516)
.++.+.+.+. .++.+|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~ 102 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISY 102 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC
Confidence 4555555544 45566667777788888888887777776 67777777788877777777776666667777777777
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCCh-hhhhcCCCCcEEecCCCCCcc
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPT-NIGHELVNLQKLLVPLNKIRF 338 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~-~~~~~l~~L~~L~L~~n~l~~ 338 (516)
|.++.++ .+..+++|+.|++++|.++.++. ..+..+++|+.|++++|.+..
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 7777765 56666777777777777766544 233446666666666666543
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=2.4e-13 Score=123.31 Aligned_cols=126 Identities=29% Similarity=0.450 Sum_probs=75.7
Q ss_pred ccEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCcch-hhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCC
Q 010182 210 LEQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVIPD-SIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGN 287 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n 287 (516)
.+.+++++++++.+|..+ .++|+.|++++|.++.++. .+..+++|++|++++|.++.++. .+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 355666666666666433 2566666666666665543 35666666666666666666554 3456666666666666
Q ss_pred CCCCCCcc-cccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182 288 KLSALPDS-ISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337 (516)
Q Consensus 288 ~l~~l~~~-l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 337 (516)
.++.++.. +..+++|++|++++|.++.++...+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 66655433 455666666666666666665555444555555555555554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=4.1e-13 Score=121.76 Aligned_cols=127 Identities=26% Similarity=0.386 Sum_probs=85.9
Q ss_pred CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCC
Q 010182 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFN 310 (516)
Q Consensus 233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n 310 (516)
.+.++++++.++.+|..+. ++|++|++++|.++.++. .+..+++|++|++++|.++.++.. +..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 4667777777777765443 577788888777776665 456777777777777777766543 466777777777777
Q ss_pred CCCcCChhhhhcCCCCcEEecCCCCCccccch-hcCCCCCcEEEccCCCCCC
Q 010182 311 RLAYLPTNIGHELVNLQKLLVPLNKIRFLPTS-IGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~-l~~l~~L~~L~Ls~n~l~~ 361 (516)
.++.++...+..+++|+.|++++|.++.++.. +..+++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 77776666555566666676666666666544 3556666666666666554
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.47 E-value=2e-13 Score=136.58 Aligned_cols=228 Identities=17% Similarity=0.180 Sum_probs=167.5
Q ss_pred ccccHHHHHHhHHhhCCCccEEEeecCCCC--------------------cchH-hhcC--------CCCCcEEEeecCC
Q 010182 192 EEVNEEVMGLLQEAAGKSLEQVDLSSRGLR--------------------FLPE-AFGR--------IAGLRLMSLSNNH 242 (516)
Q Consensus 192 ~~~~~~~~~~l~~~~~~~L~~L~L~~~~l~--------------------~l~~-~~~~--------l~~L~~L~Ls~n~ 242 (516)
+.+....+..+... .++|+.|||++|.+. .+|. +|.. +++|+.|+|.+ .
T Consensus 34 g~i~~~~~~~l~~~-l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~ 111 (329)
T 3sb4_A 34 GKLNAEDFRHLRDE-FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-K 111 (329)
T ss_dssp EEECHHHHHHHHHS-CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-T
T ss_pred ccccHHHHHHHHHh-hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-c
Confidence 33444455555442 578999999999988 3443 5778 99999999999 8
Q ss_pred CCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC----CCCC-CcccccCCCCc-EEeCCCCC---
Q 010182 243 LEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK----LSAL-PDSISHCRSLV-ELDASFNR--- 311 (516)
Q Consensus 243 l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~----l~~l-~~~l~~l~~L~-~L~L~~n~--- 311 (516)
++.++ .+|.++++|+.|++.+|.+..++. +|..+.++..+.+..+. ...+ ...+..+..|+ .+.+....
T Consensus 112 i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~ 191 (329)
T 3sb4_A 112 IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLE 191 (329)
T ss_dssp CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHH
T ss_pred ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHH
Confidence 98884 589999999999999999987765 67777777776665521 1222 22344555555 33332111
Q ss_pred ---------------------CC-cCChhhhhcCCCCcEEecCCCCCccccc-hhcCCCCCcEEEccCCCCCCcch-hhC
Q 010182 312 ---------------------LA-YLPTNIGHELVNLQKLLVPLNKIRFLPT-SIGEMASLRHLDAHFNELHGLPA-TIG 367 (516)
Q Consensus 312 ---------------------l~-~l~~~~~~~l~~L~~L~L~~n~l~~l~~-~l~~l~~L~~L~Ls~n~l~~l~~-~l~ 367 (516)
+. .-...+...+++|+.+++.+|++..++. .+..|.+|++|++..| ++.++. ++.
T Consensus 192 ~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~ 270 (329)
T 3sb4_A 192 DEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFS 270 (329)
T ss_dssp HHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred HHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhh
Confidence 00 0001111237899999999999998876 5788999999999998 777654 789
Q ss_pred CCCCCc-EEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEec
Q 010182 368 KLTNLE-ILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNL 425 (516)
Q Consensus 368 ~l~~L~-~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L 425 (516)
.+.+|+ .+++.++ +..+ +.+|.++++|+.|++++|+++.++ .+|..+++|+.++.
T Consensus 271 ~~~~L~~~l~l~~~---l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 271 NCGRLAGTLELPAS---VTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCTTCCEEEEECTT---CCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CChhccEEEEEccc---ceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 999999 9999884 2333 368899999999999999999997 79999999999864
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.45 E-value=6.5e-13 Score=136.55 Aligned_cols=262 Identities=16% Similarity=0.177 Sum_probs=166.3
Q ss_pred ccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182 210 LEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG 286 (516)
Q Consensus 210 L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~ 286 (516)
++.+.+.+ .++.++. +|..+ +|+.+.+..+ +..+. .+|.++ +|+.+.+.. .++.++. +|..+.+|+.+++++
T Consensus 115 l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~ 189 (401)
T 4fdw_A 115 YNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSK 189 (401)
T ss_dssp CSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTT
T ss_pred ccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCC
Confidence 33444432 2444443 46553 6888887665 66663 356663 688888775 5666653 677778888888888
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCCc-chh
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHGL-PAT 365 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~ 365 (516)
|.++.++.....+.+|+.+.+.. .++.++...|.++.+|+.+.+..+ +..+........+|+.+.+ .+.++.+ ..+
T Consensus 190 n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~a 266 (401)
T 4fdw_A 190 TKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNIASRA 266 (401)
T ss_dssp SCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEECTTT
T ss_pred CcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEEChhH
Confidence 88877766555567888888874 377777777777888888888764 5555443322267888877 3446665 346
Q ss_pred hCCCCCCcEEEcccCCCCC---CCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhc
Q 010182 366 IGKLTNLEILNVSSNFTDM---KEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKE 440 (516)
Q Consensus 366 l~~l~~L~~L~L~~n~~~~---~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 440 (516)
+..+++|+.+.+.+|.+.. ..+ ...|.++++|+.++|. +.++.++ .+|..|++|+.+.|..| +..++...|.
T Consensus 267 F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~- 343 (401)
T 4fdw_A 267 FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFN- 343 (401)
T ss_dssp TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSS-
T ss_pred hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCC-
Confidence 7778888888887774320 012 3467777888888887 4477775 67777888888888544 5555444333
Q ss_pred hhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCcccc-ccccEEEccCCcccccc
Q 010182 441 GVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWLT-RSTSWLKTVGENVSGIL 501 (516)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~~-~~l~~l~l~~N~ls~~~ 501 (516)
.. +++.+++.+|.+.......+... ..+..+.+-.|.+..+.
T Consensus 344 ------------------~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~~y~ 386 (401)
T 4fdw_A 344 ------------------NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVEKYK 386 (401)
T ss_dssp ------------------SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHHHHH
T ss_pred ------------------CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHHHhh
Confidence 12 45667777776665544444443 24566777766665554
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=4e-15 Score=137.78 Aligned_cols=139 Identities=24% Similarity=0.305 Sum_probs=76.1
Q ss_pred CCCCcchhhcCCCCCcEEEeeCCCCCCCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhc
Q 010182 265 LLETLPDSIGLLDNLKILDVSGNKLSALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIG 344 (516)
Q Consensus 265 ~l~~l~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~ 344 (516)
.++.+|..+..+++|++|++++|.++.+| .+..+++|+.|++++|.++.+ |..+.
T Consensus 36 ~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l------------------------~~~~~ 90 (198)
T 1ds9_A 36 PIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKI------------------------ENLDA 90 (198)
T ss_dssp TCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSC------------------------SSHHH
T ss_pred cHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccc------------------------cchhh
Confidence 34444445555555555555555555554 445555555555555555444 44444
Q ss_pred CCCCCcEEEccCCCCCCcchhhCCCCCCcEEEcccCCCCCCCcc--hhhcCCCCccEEeccCCCCCCch-----------
Q 010182 345 EMASLRHLDAHFNELHGLPATIGKLTNLEILNVSSNFTDMKELP--ETFGELTNLKELDLSNNQIHALP----------- 411 (516)
Q Consensus 345 ~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~L~~n~~~~~~l~--~~l~~l~~L~~L~L~~n~i~~lp----------- 411 (516)
.+++|++|++++|.++++| .+..+++|+.|++++|.+ ..++ ..+..+++|++|++++|.++..+
T Consensus 91 ~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i--~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 167 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKI--TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEEC--CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHH
T ss_pred cCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcC--CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHH
Confidence 4455555555555555554 344555556666655533 2222 24556666666666666665432
Q ss_pred hhhcCCCcccEEecccCCCCCC
Q 010182 412 NTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 412 ~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
..+..+++|+.|+ +|+++..
T Consensus 168 ~~~~~l~~L~~Ld--~~~i~~~ 187 (198)
T 1ds9_A 168 EVVKRLPNLKKLD--GMPVDVD 187 (198)
T ss_dssp HHHHHCSSCSEEC--CGGGTTT
T ss_pred HHHHhCCCcEEEC--CcccCHH
Confidence 2367788888876 6666543
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.37 E-value=9.5e-12 Score=127.84 Aligned_cols=219 Identities=13% Similarity=0.188 Sum_probs=175.0
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchhhcCCCCCcEEEee
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDSIGLLDNLKILDVS 285 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls 285 (516)
.+|+.+.+..+ ++.++. +|.. .+|+.+.+.+ .+..+ ..+|.++++|+.+++.+|.++.++...-...+|+.+.+.
T Consensus 135 ~~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp 211 (401)
T 4fdw_A 135 SQIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLP 211 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECC
T ss_pred CCccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeC
Confidence 47899998766 777765 5766 4799999986 77777 468999999999999999999998744347899999998
Q ss_pred CCCCCCCC-cccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccc-cchhcCCCCCcEEEccCCCCC---
Q 010182 286 GNKLSALP-DSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFL-PTSIGEMASLRHLDAHFNELH--- 360 (516)
Q Consensus 286 ~n~l~~l~-~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~--- 360 (516)
.+ ++.++ ..|.+|.+|+.+++..+ ++.++...|.+ .+|+.+.+ .+.+..+ ..++..|.+|+.+++.+|.+.
T Consensus 212 ~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~ 287 (401)
T 4fdw_A 212 VT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDP 287 (401)
T ss_dssp TT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCT
T ss_pred Cc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCc
Confidence 55 77664 56888999999999875 78888888876 89999999 4556666 357888999999999988775
Q ss_pred --Cc-chhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCCH
Q 010182 361 --GL-PATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 361 --~l-~~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.+ ..++..|++|+.+.+.++ +..+ ..+|.++.+|+.+.|..+ ++.++ .+|..+ +|+.+++.+|.+...+.
T Consensus 288 ~~~I~~~aF~~c~~L~~l~l~~~---i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~ 362 (401)
T 4fdw_A 288 EAMIHPYCLEGCPKLARFEIPES---IRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFE 362 (401)
T ss_dssp TCEECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCC
T ss_pred ccEECHHHhhCCccCCeEEeCCc---eEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCccccc
Confidence 34 458889999999999864 2333 357888999999999654 88875 789999 99999999998876654
Q ss_pred HHH
Q 010182 436 EVV 438 (516)
Q Consensus 436 ~~~ 438 (516)
..+
T Consensus 363 ~~F 365 (401)
T 4fdw_A 363 KVW 365 (401)
T ss_dssp SSC
T ss_pred ccc
Confidence 433
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=2.1e-13 Score=138.77 Aligned_cols=179 Identities=20% Similarity=0.191 Sum_probs=121.5
Q ss_pred CCCccEEEeeCCCCCCc-----chhhcC-CCCCcEEEeeCCCCCCC--CcccccCCCCcEEeCCCCCCCcCChhhh----
Q 010182 253 LVNLEELNLASNLLETL-----PDSIGL-LDNLKILDVSGNKLSAL--PDSISHCRSLVELDASFNRLAYLPTNIG---- 320 (516)
Q Consensus 253 l~~L~~L~Ls~n~l~~l-----~~~l~~-l~~L~~L~Ls~n~l~~l--~~~l~~l~~L~~L~L~~n~l~~l~~~~~---- 320 (516)
+++|++|++++|.++.. ...+.. .++|++|+|++|.++.. ......+.+|++|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 45799999999999843 233333 36899999999988732 1122335688999999998875433222
Q ss_pred -hcCCCCcEEecCCCCCcc-----ccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCC---
Q 010182 321 -HELVNLQKLLVPLNKIRF-----LPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKE--- 386 (516)
Q Consensus 321 -~~l~~L~~L~L~~n~l~~-----l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~--- 386 (516)
...++|+.|++++|.++. ++..+..+++|++|+|++|.+++ ++..+..+++|++|+|++|.++..+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 236789999999998863 45566778889999999998876 4566777888999999998665332
Q ss_pred cchhhcCCCCccEEeccCCCCCCch-hhhcCC---C--cccEEe--cccCCCC
Q 010182 387 LPETFGELTNLKELDLSNNQIHALP-NTFGRL---D--KLIKLN--LEENPMV 431 (516)
Q Consensus 387 l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l---~--~L~~L~--L~~N~l~ 431 (516)
+...+...++|++|+|++|.|+... ..+... . .|+.+. +..|.++
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 3344556788999999999888543 333222 2 166666 6666554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=8.9e-12 Score=112.78 Aligned_cols=101 Identities=26% Similarity=0.386 Sum_probs=44.6
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcchh-hcCCCCCcEEEeeCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPDS-IGLLDNLKILDVSGNK 288 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~Ls~n~ 288 (516)
+.++++++.++.+|..+. ++|++|++++|.++.+ |..|.++++|++|+|++|.|+.+|.. |..+++|++|+|++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 344444444444444332 4444444444444444 33444444444444444444444432 2344444444444444
Q ss_pred CCCCCcc-cccCCCCcEEeCCCCCCC
Q 010182 289 LSALPDS-ISHCRSLVELDASFNRLA 313 (516)
Q Consensus 289 l~~l~~~-l~~l~~L~~L~L~~n~l~ 313 (516)
|+.++.. +..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 4444332 334444444444444443
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.31 E-value=1.2e-11 Score=111.52 Aligned_cols=100 Identities=25% Similarity=0.398 Sum_probs=43.9
Q ss_pred cEEEeecCCCCcchHhhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC
Q 010182 211 EQVDLSSRGLRFLPEAFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK 288 (516)
Q Consensus 211 ~~L~L~~~~l~~l~~~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~ 288 (516)
+.++++++.++.+|..+. ++|++|+|++|.|+.+ +..|.++++|++|+|++|.|+.++. .|..+++|++|+|++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 344444444444443321 4444444444444444 3334444444444444444444433 23444444444444444
Q ss_pred CCCCCc-ccccCCCCcEEeCCCCCC
Q 010182 289 LSALPD-SISHCRSLVELDASFNRL 312 (516)
Q Consensus 289 l~~l~~-~l~~l~~L~~L~L~~n~l 312 (516)
|+.++. .+..+++|+.|++++|.+
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 444432 233444444444444443
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.2e-11 Score=111.81 Aligned_cols=105 Identities=27% Similarity=0.339 Sum_probs=70.0
Q ss_pred cEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCCC
Q 010182 234 RLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFNR 311 (516)
Q Consensus 234 ~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n~ 311 (516)
+.+++++|.++.+|..+. ++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.+|.. +..+++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567777777777766553 5777777777777766 34566777777777777777766554 3566777777777777
Q ss_pred CCcCChhhhhcCCCCcEEecCCCCCcccc
Q 010182 312 LAYLPTNIGHELVNLQKLLVPLNKIRFLP 340 (516)
Q Consensus 312 l~~l~~~~~~~l~~L~~L~L~~n~l~~l~ 340 (516)
|+.++...+..+++|+.|++++|.+...+
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccc
Confidence 76666665555666666666666665443
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.29 E-value=1.2e-11 Score=111.36 Aligned_cols=103 Identities=24% Similarity=0.330 Sum_probs=66.0
Q ss_pred CcEEEeecCCCCCcchhhcCCCCccEEEeeCCCCCCc-chhhcCCCCCcEEEeeCCCCCCCCcc-cccCCCCcEEeCCCC
Q 010182 233 LRLMSLSNNHLEVIPDSIAGLVNLEELNLASNLLETL-PDSIGLLDNLKILDVSGNKLSALPDS-ISHCRSLVELDASFN 310 (516)
Q Consensus 233 L~~L~Ls~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~~-l~~l~~L~~L~L~~n 310 (516)
.+.+++++|.++.+|..+. ++|++|+|++|.|+.+ |..|..+++|++|+|++|+|+.++.. +..+++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4567777777777665542 5677777777777766 34566666777777777766666543 456666666666666
Q ss_pred CCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182 311 RLAYLPTNIGHELVNLQKLLVPLNKIR 337 (516)
Q Consensus 311 ~l~~l~~~~~~~l~~L~~L~L~~n~l~ 337 (516)
.++.++...+..+++|+.|++++|.+.
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 666666655555666666666666554
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.08 E-value=6e-10 Score=111.90 Aligned_cols=102 Identities=24% Similarity=0.254 Sum_probs=76.7
Q ss_pred EEecCCC-CCccccchhcCCCCCcEEEccC-CCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEecc
Q 010182 328 KLLVPLN-KIRFLPTSIGEMASLRHLDAHF-NELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLS 403 (516)
Q Consensus 328 ~L~L~~n-~l~~l~~~l~~l~~L~~L~Ls~-n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~ 403 (516)
.++++++ +++.+|. +..+++|++|+|++ |.++.++ ..+..+++|+.|+|++|.+. .+ |..|.++++|+.|+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC--EECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc--eeCHHHhcCCcCCCEEeCC
Confidence 4566666 6777777 77777888888885 8888765 46788888888888888543 34 4467888888888888
Q ss_pred CCCCCCchh-hhcCCCcccEEecccCCCCCC
Q 010182 404 NNQIHALPN-TFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 404 ~n~i~~lp~-~l~~l~~L~~L~L~~N~l~~~ 433 (516)
+|+|+.+|. .+..++ |+.|+|.+|++...
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 888888874 444444 99999999988764
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=3.3e-10 Score=113.84 Aligned_cols=103 Identities=23% Similarity=0.231 Sum_probs=86.1
Q ss_pred cEEEeecC-CCCcchHhhcCCCCCcEEEeec-CCCCCcc-hhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeC
Q 010182 211 EQVDLSSR-GLRFLPEAFGRIAGLRLMSLSN-NHLEVIP-DSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSG 286 (516)
Q Consensus 211 ~~L~L~~~-~l~~l~~~~~~l~~L~~L~Ls~-n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~ 286 (516)
..++++++ +++.+|. +..+++|+.|+|++ |.++.++ ..|.++++|++|+|++|.|+.++. .|..+++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 35788888 8999998 88899999999996 8999885 578899999999999999997765 678899999999999
Q ss_pred CCCCCCCcccccCCCCcEEeCCCCCCCc
Q 010182 287 NKLSALPDSISHCRSLVELDASFNRLAY 314 (516)
Q Consensus 287 n~l~~l~~~l~~l~~L~~L~L~~n~l~~ 314 (516)
|.|+.+|..+.....|+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999887665544449999999998764
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.91 E-value=8.2e-10 Score=111.57 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=49.4
Q ss_pred CCCCCcEEEccCCCCCC-cchhh---CCCCCCcEEEcccCCCCCCC---cchhhcCCCCccEEeccCCCCCCch-hhhcC
Q 010182 345 EMASLRHLDAHFNELHG-LPATI---GKLTNLEILNVSSNFTDMKE---LPETFGELTNLKELDLSNNQIHALP-NTFGR 416 (516)
Q Consensus 345 ~l~~L~~L~Ls~n~l~~-l~~~l---~~l~~L~~L~L~~n~~~~~~---l~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~ 416 (516)
.+++|++|++.+|.+++ .+..+ ..+++|++|+|+.|.++..+ ++..+..+++|+.|+|++|.|++-. ..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35677777777777654 11111 24667888888777554332 2223345678888888888777431 33332
Q ss_pred -CCcccEEecccCC
Q 010182 417 -LDKLIKLNLEENP 429 (516)
Q Consensus 417 -l~~L~~L~L~~N~ 429 (516)
+ ...++++++.
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 4557787776
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.88 E-value=1.4e-09 Score=109.77 Aligned_cols=67 Identities=19% Similarity=0.248 Sum_probs=38.0
Q ss_pred CCCCCcEEEcccCCCCCCCcchhh---cCCCCccEEeccCCCCCC-----chhhhcCCCcccEEecccCCCCCCCH
Q 010182 368 KLTNLEILNVSSNFTDMKELPETF---GELTNLKELDLSNNQIHA-----LPNTFGRLDKLIKLNLEENPMVIPPV 435 (516)
Q Consensus 368 ~l~~L~~L~L~~n~~~~~~l~~~l---~~l~~L~~L~L~~n~i~~-----lp~~l~~l~~L~~L~L~~N~l~~~~~ 435 (516)
.+++|++|+|.+|.+.... +..+ ..+++|++|+|+.|.|++ ++..+..+++|+.|+|++|.|++...
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~-~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVV-VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp TCTTCCEEEEESCTTHHHH-HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred CCCCcCEEeCCCCCCchHH-HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 3567777777766443211 1112 235667777777777664 23344556677777777776664433
No 149
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.86 E-value=1.7e-08 Score=103.35 Aligned_cols=259 Identities=14% Similarity=0.158 Sum_probs=134.8
Q ss_pred CCccEEEeecCCCCcchH-hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCC------------------
Q 010182 208 KSLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLE------------------ 267 (516)
Q Consensus 208 ~~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~------------------ 267 (516)
.+|+.+.+.. .++.++. +|..+.+|+.+++.++ ++.+ ..+|.++.+|+.+.+..+ +.
T Consensus 71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence 5677777753 3666644 5777777777777644 5544 235566666665544322 11
Q ss_pred ----Ccc-hhhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccc
Q 010182 268 ----TLP-DSIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPT 341 (516)
Q Consensus 268 ----~l~-~~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~ 341 (516)
.+. .+|..+.+|+.+.+..+. ..+ ...+..+.+|+.+.+..+ ++.+....+.++..|+.+.+..+... +..
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~ 224 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGD 224 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECT
T ss_pred ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eeh
Confidence 111 234555666666665432 223 234555666666666544 45555555555555555554433211 111
Q ss_pred hhcCCCCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCCCCCC------------------Cc-chhhcCCCCccEEe
Q 010182 342 SIGEMASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNFTDMK------------------EL-PETFGELTNLKELD 401 (516)
Q Consensus 342 ~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~~~~~------------------~l-~~~l~~l~~L~~L~ 401 (516)
......+|+.+.+..+ ++.+ ...+..+..|+.+.+..+...+. .+ ...+..+.+|+.+.
T Consensus 225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~ 303 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVK 303 (394)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEE
T ss_pred hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccc
Confidence 1122233444433221 1111 11333444444444433311000 01 12455677788888
Q ss_pred ccCCCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCC
Q 010182 402 LSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPT 480 (516)
Q Consensus 402 L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~ 480 (516)
+.++ ++.++ .+|..+.+|+.++|..+ ++.++...|. ...+|+.+++..| ++.....+
T Consensus 304 l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------------------~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 304 LLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFR-------------------GCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp ECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTT-------------------TCTTCCEECCCTT-CCEECTTT
T ss_pred cccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhcc-------------------CCCCCCEEEECcc-ccEehHHH
Confidence 7654 66665 67888888888888643 5555544433 1234566667555 55555566
Q ss_pred ccccccccEEEccCC
Q 010182 481 GWLTRSTSWLKTVGE 495 (516)
Q Consensus 481 ~~~~~~l~~l~l~~N 495 (516)
+..+.+|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 777778888888654
No 150
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.80 E-value=2.7e-09 Score=97.35 Aligned_cols=112 Identities=17% Similarity=0.162 Sum_probs=84.0
Q ss_pred cCCCCcEEecCCC-CCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCC---c
Q 010182 322 ELVNLQKLLVPLN-KIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKE---L 387 (516)
Q Consensus 322 ~l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~---l 387 (516)
..++|++|++++| .+. .+...+...++|++|+|++|.+++ +...+...++|++|+|++|.++..+ +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3555666666666 554 344566677788888888888876 5566777788999999999776443 3
Q ss_pred chhhcCCCCccEEec--cCCCCCC-----chhhhcCCCcccEEecccCCCCCC
Q 010182 388 PETFGELTNLKELDL--SNNQIHA-----LPNTFGRLDKLIKLNLEENPMVIP 433 (516)
Q Consensus 388 ~~~l~~l~~L~~L~L--~~n~i~~-----lp~~l~~l~~L~~L~L~~N~l~~~ 433 (516)
...+...++|++|+| ++|.|+. +...+..+++|++|+|++|.++..
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 455667788999999 8899984 557788889999999999988643
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.72 E-value=6.6e-09 Score=94.72 Aligned_cols=106 Identities=17% Similarity=0.270 Sum_probs=60.2
Q ss_pred CCCccEEEeecC-CCC-----cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCCC-----cc
Q 010182 207 GKSLEQVDLSSR-GLR-----FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLET-----LP 270 (516)
Q Consensus 207 ~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~ 270 (516)
.+.|++|+|++| .+. .+...+...++|++|+|++|.|+ .+...+...++|++|+|++|.|+. +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 356777777776 665 23445556666777777777665 234445555566666666666662 33
Q ss_pred hhhcCCCCCcEEEe--eCCCCCC-----CCcccccCCCCcEEeCCCCCC
Q 010182 271 DSIGLLDNLKILDV--SGNKLSA-----LPDSISHCRSLVELDASFNRL 312 (516)
Q Consensus 271 ~~l~~l~~L~~L~L--s~n~l~~-----l~~~l~~l~~L~~L~L~~n~l 312 (516)
..+...++|++|+| ++|.|+. +...+...++|++|++++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 44555555666666 5555551 233444445555555555554
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.71 E-value=2.1e-07 Score=95.07 Aligned_cols=82 Identities=11% Similarity=0.371 Sum_probs=43.0
Q ss_pred hhcCCCCCcEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCC
Q 010182 342 SIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLD 418 (516)
Q Consensus 342 ~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~ 418 (516)
.+.++.+|+.+.+. +.++.++ .++..+.+|+.+.|..+ +..+ ..+|.++.+|+.+.|..+ ++.+. .+|.+|.
T Consensus 283 aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~ 357 (394)
T 4gt6_A 283 AFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG---ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCT 357 (394)
T ss_dssp TTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCT
T ss_pred ccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc---ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCC
Confidence 34444555555543 2333332 24555666666666554 1222 234556666666666433 55554 5666666
Q ss_pred cccEEecccC
Q 010182 419 KLIKLNLEEN 428 (516)
Q Consensus 419 ~L~~L~L~~N 428 (516)
+|+.+++.++
T Consensus 358 ~L~~i~~~~~ 367 (394)
T 4gt6_A 358 ALNNIEYSGS 367 (394)
T ss_dssp TCCEEEESSC
T ss_pred CCCEEEECCc
Confidence 6666666554
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.70 E-value=2.6e-07 Score=94.37 Aligned_cols=259 Identities=12% Similarity=0.186 Sum_probs=133.6
Q ss_pred CccEEEeecCCCCcchH-hhcCCCCCcEEEeecCC---CCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEE
Q 010182 209 SLEQVDLSSRGLRFLPE-AFGRIAGLRLMSLSNNH---LEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKIL 282 (516)
Q Consensus 209 ~L~~L~L~~~~l~~l~~-~~~~l~~L~~L~Ls~n~---l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L 282 (516)
.|+.+.+..+ ++.+.. +|..+.+|+.+.+..|. ++.+ ..+|.++.+|+.+.+..+ ++.++. .|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 4777777653 666644 68888888888887653 5555 346777777777666543 444433 56677778877
Q ss_pred EeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCC---
Q 010182 283 DVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNE--- 358 (516)
Q Consensus 283 ~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~--- 358 (516)
.+..+ +..+ ...+..+.+|+.+.+..+ ++.+....|. ...|+.+.+..+-...-..++..+.++.......+.
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred cccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 77643 2333 234566777777776543 4455555554 345555555433222111222233333322211110
Q ss_pred ---------------------------------CCCc-chhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccC
Q 010182 359 ---------------------------------LHGL-PATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSN 404 (516)
Q Consensus 359 ---------------------------------l~~l-~~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~ 404 (516)
++.+ ..++..+..|+.+.+..+...+. ...+.++..|+.+.+.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~- 296 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFS- 296 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECC-
T ss_pred ccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceec--CcccccccccccccCC-
Confidence 0011 12455566666666655422111 2345556666666664
Q ss_pred CCCCCch-hhhcCCCcccEEecccCCCCCCCHHHHhchhHHHHHHHhhhhhhHhHHHhhhcccccccccCCCCCCCCccc
Q 010182 405 NQIHALP-NTFGRLDKLIKLNLEENPMVIPPVEVVKEGVGAVKTFMAKRWLDILLEEERRSMLKLEGNNNEGEQMPTGWL 483 (516)
Q Consensus 405 n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~L~~N~i~~~~~~~~~~ 483 (516)
+.++.++ .+|..|.+|+.++|..+ ++.++...|. ...+|+.+.+..+ ++.....++..
T Consensus 297 ~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~-------------------~C~~L~~i~ip~s-v~~I~~~aF~~ 355 (394)
T 4gt6_A 297 SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA-------------------GCEQLERIAIPSS-VTKIPESAFSN 355 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-------------------TCTTCCEEEECTT-CCBCCGGGGTT
T ss_pred CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh-------------------CCCCCCEEEECcc-cCEEhHhHhhC
Confidence 3455554 55666666666666543 4433333222 1123444444322 44333344555
Q ss_pred cccccEEEccCCc
Q 010182 484 TRSTSWLKTVGEN 496 (516)
Q Consensus 484 ~~~l~~l~l~~N~ 496 (516)
+.+|+.+++.+|.
T Consensus 356 C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 356 CTALNNIEYSGSR 368 (394)
T ss_dssp CTTCCEEEESSCH
T ss_pred CCCCCEEEECCce
Confidence 5666666666553
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.58 E-value=3.2e-07 Score=93.72 Aligned_cols=193 Identities=17% Similarity=0.226 Sum_probs=106.0
Q ss_pred hhcCCCCCcEEEeecCCCCCc-chhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCC---------------
Q 010182 226 AFGRIAGLRLMSLSNNHLEVI-PDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNK--------------- 288 (516)
Q Consensus 226 ~~~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~--------------- 288 (516)
+|..+.+|+.+.+.++ +..+ ...|.++.+|+.+.+..+ ++.++. +|..+..|+.+.+..+.
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKN 234 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCE
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCce
Confidence 4666666666666543 2333 335566666666666544 333322 44445555554443331
Q ss_pred ------CCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCccccchhcCCCCCcEEEccCCCCCC
Q 010182 289 ------LSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLPTSIGEMASLRHLDAHFNELHG 361 (516)
Q Consensus 289 ------l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~~~l~~l~~L~~L~Ls~n~l~~ 361 (516)
++.+ ...+..+..|+.+.+..+ +..+....+..+..++.+....+.+.. ..+..+.+|+.+.+..+ ++.
T Consensus 235 i~ip~~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~ 310 (394)
T 4fs7_A 235 IIIPDSFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKF 310 (394)
T ss_dssp EEECTTCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCE
T ss_pred EEECCCceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeecc--ccccccccccccccccc-cce
Confidence 1111 123344555555555443 223344444445555555544433221 24556677777777543 555
Q ss_pred cc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccC
Q 010182 362 LP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEEN 428 (516)
Q Consensus 362 l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N 428 (516)
+. .++..+.+|+.+++..+ +..+ ..+|.++.+|+.+.+..+ ++.+. .+|..|++|+.+++..+
T Consensus 311 I~~~aF~~c~~L~~i~lp~~---v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 311 IGEEAFESCTSLVSIDLPYL---VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp ECTTTTTTCTTCCEECCCTT---CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred echhhhcCCCCCCEEEeCCc---ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 43 36677778888887654 2233 346777778888887665 66665 67778888888877643
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.17 E-value=1.1e-06 Score=80.03 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=82.6
Q ss_pred cCCCCcEEecCCC-CCc-----cccchhcCCCCCcEEEccCCCCCC-----cchhhCCCCCCcEEEcccCCCCCCCc---
Q 010182 322 ELVNLQKLLVPLN-KIR-----FLPTSIGEMASLRHLDAHFNELHG-----LPATIGKLTNLEILNVSSNFTDMKEL--- 387 (516)
Q Consensus 322 ~l~~L~~L~L~~n-~l~-----~l~~~l~~l~~L~~L~Ls~n~l~~-----l~~~l~~l~~L~~L~L~~n~~~~~~l--- 387 (516)
..+.|++|+|++| .|. .+...+...+.|+.|+|++|.+++ +...+...+.|++|+|++|.|+..+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3456666777664 554 355677777889999999998876 66778888899999999998875543
Q ss_pred chhhcCCCCccEEeccCC---CCC-----CchhhhcCCCcccEEecccCCCC
Q 010182 388 PETFGELTNLKELDLSNN---QIH-----ALPNTFGRLDKLIKLNLEENPMV 431 (516)
Q Consensus 388 ~~~l~~l~~L~~L~L~~n---~i~-----~lp~~l~~l~~L~~L~L~~N~l~ 431 (516)
...+...+.|++|+|++| .|. .+...+...++|+.|+++.|.+.
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 334556678999999876 455 35678889999999999887654
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.06 E-value=2.6e-06 Score=77.67 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=64.2
Q ss_pred CCCccEEEeecC-CCC-----cchHhhcCCCCCcEEEeecCCCC-----CcchhhcCCCCccEEEeeCCCCC-----Ccc
Q 010182 207 GKSLEQVDLSSR-GLR-----FLPEAFGRIAGLRLMSLSNNHLE-----VIPDSIAGLVNLEELNLASNLLE-----TLP 270 (516)
Q Consensus 207 ~~~L~~L~L~~~-~l~-----~l~~~~~~l~~L~~L~Ls~n~l~-----~l~~~l~~l~~L~~L~Ls~n~l~-----~l~ 270 (516)
.+.|++|+|+++ .|. .+.+++...+.|+.|+|++|.|+ .+...+...+.|++|+|++|.|+ .+.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467888888774 665 34556666777777777777776 34455556667777777777776 233
Q ss_pred hhhcCCCCCcEEEeeCCC---CC-----CCCcccccCCCCcEEeCCCCC
Q 010182 271 DSIGLLDNLKILDVSGNK---LS-----ALPDSISHCRSLVELDASFNR 311 (516)
Q Consensus 271 ~~l~~l~~L~~L~Ls~n~---l~-----~l~~~l~~l~~L~~L~L~~n~ 311 (516)
.++.....|++|+|++|. ++ .+...+...++|+.|+++.|.
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 455555666666666542 23 123344455556666655544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.04 E-value=6.9e-07 Score=85.82 Aligned_cols=62 Identities=34% Similarity=0.387 Sum_probs=33.7
Q ss_pred cCCCCccEEEeeCCCCCCcc---hhhcCCCCCcEEEeeCCCCCCCCcccccCC--CCcEEeCCCCCCC
Q 010182 251 AGLVNLEELNLASNLLETLP---DSIGLLDNLKILDVSGNKLSALPDSISHCR--SLVELDASFNRLA 313 (516)
Q Consensus 251 ~~l~~L~~L~Ls~n~l~~l~---~~l~~l~~L~~L~Ls~n~l~~l~~~l~~l~--~L~~L~L~~n~l~ 313 (516)
.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++|.|+.+ ..+..+. +|++|++++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 34556666666666666443 3344566666666666666544 2233322 5556666666554
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.04 E-value=8.3e-05 Score=75.07 Aligned_cols=131 Identities=14% Similarity=0.233 Sum_probs=70.2
Q ss_pred ccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chhcCCCCCcEEEccCCCCCCcc-hhhCCCCCCcE
Q 010182 297 SHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASLRHLDAHFNELHGLP-ATIGKLTNLEI 374 (516)
Q Consensus 297 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L~~L~Ls~n~l~~l~-~~l~~l~~L~~ 374 (516)
..+.+|+.+.+..+ +..+....+.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+..+ ++.++ ..+..+.+|+.
T Consensus 214 ~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34445555555332 44445555555666666666544 33332 24455666666666432 44432 25566666777
Q ss_pred EEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcccEEecccCCCCCCC
Q 010182 375 LNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKLIKLNLEENPMVIPP 434 (516)
Q Consensus 375 L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L~~L~L~~N~l~~~~ 434 (516)
+.+.++.+ ..+ ...|.++.+|+.+.|..+ ++.+. .+|.+|.+|+.+.+..+ ++.++
T Consensus 291 i~l~~~~i--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~ 348 (379)
T 4h09_A 291 VVMDNSAI--ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIE 348 (379)
T ss_dssp EEECCTTC--CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEEC
T ss_pred cccccccc--ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEc
Confidence 76665522 222 235666666777766543 55554 56666677776666543 44333
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.98 E-value=9.8e-05 Score=74.53 Aligned_cols=142 Identities=13% Similarity=0.187 Sum_probs=105.4
Q ss_pred hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCcccc-chhcCCCCC
Q 010182 272 SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIRFLP-TSIGEMASL 349 (516)
Q Consensus 272 ~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~l~-~~l~~l~~L 349 (516)
.+....+|+.+.+..+ +..+ ...+..+..|+.+.+..+ ++.+....+.++.+|+.+.+..+ +..++ ..+..+.+|
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccc
Confidence 3445566777776544 3333 345677899999999765 78888888888999999998654 55554 367888999
Q ss_pred cEEEccCCCCCCcc-hhhCCCCCCcEEEcccCCCCCCCc-chhhcCCCCccEEeccCCCCCCch-hhhcCCCcc
Q 010182 350 RHLDAHFNELHGLP-ATIGKLTNLEILNVSSNFTDMKEL-PETFGELTNLKELDLSNNQIHALP-NTFGRLDKL 420 (516)
Q Consensus 350 ~~L~Ls~n~l~~l~-~~l~~l~~L~~L~L~~n~~~~~~l-~~~l~~l~~L~~L~L~~n~i~~lp-~~l~~l~~L 420 (516)
+.+.+.++.++.++ .++.++.+|+.+.|..+ +..+ ..+|.++.+|+.+.+..+ ++.+. .+|.++..+
T Consensus 289 ~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~---l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 289 TKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA---LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CEEEECCTTCCEECTTTTTTCTTCCEEECCTT---CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccccceehhhhhcCCCCCCEEEcCcc---ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 99999998888874 47889999999999875 2333 347889999999998754 77775 667666443
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=2.8e-06 Score=81.54 Aligned_cols=79 Identities=29% Similarity=0.360 Sum_probs=42.0
Q ss_pred CCCCCcEEEccCCCCCCcc---hhhCCCCCCcEEEcccCCCCCCCcchhhcCCCCccEEeccCCCCCC-ch-------hh
Q 010182 345 EMASLRHLDAHFNELHGLP---ATIGKLTNLEILNVSSNFTDMKELPETFGELTNLKELDLSNNQIHA-LP-------NT 413 (516)
Q Consensus 345 ~l~~L~~L~Ls~n~l~~l~---~~l~~l~~L~~L~L~~n~~~~~~l~~~l~~l~~L~~L~L~~n~i~~-lp-------~~ 413 (516)
++++|+.|+|++|.+++++ ..+..+++|+.|+|++|.+....-...+..+ +|++|+|++|.++. +| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 3455666666666555532 3444566666666666644321111122223 67777777776653 22 34
Q ss_pred hcCCCcccEEe
Q 010182 414 FGRLDKLIKLN 424 (516)
Q Consensus 414 l~~l~~L~~L~ 424 (516)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 56677777764
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=4.8e-06 Score=74.44 Aligned_cols=85 Identities=14% Similarity=0.183 Sum_probs=59.0
Q ss_pred CCCcEEEccCCCCCCc-chhhCCCCCCcEEEcccCC-CCCCCcchhhcCC----CCccEEeccCC-CCCCch-hhhcCCC
Q 010182 347 ASLRHLDAHFNELHGL-PATIGKLTNLEILNVSSNF-TDMKELPETFGEL----TNLKELDLSNN-QIHALP-NTFGRLD 418 (516)
Q Consensus 347 ~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~n~-~~~~~l~~~l~~l----~~L~~L~L~~n-~i~~lp-~~l~~l~ 418 (516)
..|++||+++|.+++. -..+..+++|++|+|++|. +++.++ ..+..+ ++|++|+|++| +||+-. ..+..++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3678888888887762 2456778888888888883 554444 234443 36888888888 487543 5667788
Q ss_pred cccEEecccCC-CCC
Q 010182 419 KLIKLNLEENP-MVI 432 (516)
Q Consensus 419 ~L~~L~L~~N~-l~~ 432 (516)
+|+.|+|++|+ +++
T Consensus 140 ~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 140 NLKYLFLSDLPGVKE 154 (176)
T ss_dssp TCCEEEEESCTTCCC
T ss_pred CCCEEECCCCCCCCc
Confidence 88888888885 443
No 162
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.47 E-value=8.2e-05 Score=66.43 Aligned_cols=34 Identities=24% Similarity=0.144 Sum_probs=15.9
Q ss_pred CCcEEEcccCC-CCCCCcchhhcCCCCccEEeccCC
Q 010182 371 NLEILNVSSNF-TDMKELPETFGELTNLKELDLSNN 405 (516)
Q Consensus 371 ~L~~L~L~~n~-~~~~~l~~~l~~l~~L~~L~L~~n 405 (516)
+|++|+|++|. +++.++ ..+..+++|++|+|++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl-~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHH-HHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHH-HHHhcCCCCCEEECCCC
Confidence 45555555542 333333 23344555555555555
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.69 E-value=0.0034 Score=53.05 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=31.6
Q ss_pred EEEeeCCCCC--CCCcccccCCCCcEEeCCCCCCCcCChhhhhcCCCCcEEecCCCCCc
Q 010182 281 ILDVSGNKLS--ALPDSISHCRSLVELDASFNRLAYLPTNIGHELVNLQKLLVPLNKIR 337 (516)
Q Consensus 281 ~L~Ls~n~l~--~l~~~l~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 337 (516)
.++.+++.++ .+|..+. .+|++|+|++|.|+.++...+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555555 5554432 34566666666666666666655666666666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.41 E-value=0.0029 Score=53.44 Aligned_cols=53 Identities=26% Similarity=0.402 Sum_probs=28.8
Q ss_pred EEEeecCCCC--CcchhhcCCCCccEEEeeCCCCCCcch-hhcCCCCCcEEEeeCCCC
Q 010182 235 LMSLSNNHLE--VIPDSIAGLVNLEELNLASNLLETLPD-SIGLLDNLKILDVSGNKL 289 (516)
Q Consensus 235 ~L~Ls~n~l~--~l~~~l~~l~~L~~L~Ls~n~l~~l~~-~l~~l~~L~~L~Ls~n~l 289 (516)
.++.+++.++ .+|..+. ++|++|+|++|.|+.++. .|..+++|++|+|++|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555555 5554321 245666666666665544 445566666666666654
No 165
>2ga1_A Protein of unknown function DUF433; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Anabaena variabilis} SCOP: a.4.1.16
Probab=65.29 E-value=4.4 Score=32.31 Aligned_cols=39 Identities=15% Similarity=0.163 Sum_probs=32.2
Q ss_pred cCCCchhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 010182 43 QSQKNPVIVDQMPHLSDPKLVSAMRRAIHDVYQTRSVLQ 81 (516)
Q Consensus 43 ~~~~~~~~~~~f~h~~~qe~~aam~~~~~~v~~~~~~l~ 81 (516)
.+..-.+|++.||+++...+.||+.|+.+.-.++...++
T Consensus 63 ~G~s~eeIl~~yP~Lt~edI~aAL~Ya~~~~~eId~~i~ 101 (106)
T 2ga1_A 63 QGAPDKELLANYPGLTAEDLSAAWHYYEQNPEQIDREIA 101 (106)
T ss_dssp TTCCHHHHHHHSTTCCHHHHHHHHHHHHHSHHHHHHHHC
T ss_pred cCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355568899999999999999999999986667766554
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.28 E-value=24 Score=27.45 Aligned_cols=11 Identities=9% Similarity=0.123 Sum_probs=4.3
Q ss_pred ccCCCCcEEeC
Q 010182 297 SHCRSLVELDA 307 (516)
Q Consensus 297 ~~l~~L~~L~L 307 (516)
.+|.+|+.+.+
T Consensus 17 ~~c~~L~~i~i 27 (100)
T 2lz0_A 17 AGNTVIREITV 27 (100)
T ss_dssp TTCTTCCCEEE
T ss_pred cCCCCCcEEEc
Confidence 33344443333
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.33 E-value=29 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.164 Sum_probs=18.0
Q ss_pred hhcCCCCCcEEEeeCCCCCCC-CcccccCCCCcEEeCCC
Q 010182 272 SIGLLDNLKILDVSGNKLSAL-PDSISHCRSLVELDASF 309 (516)
Q Consensus 272 ~l~~l~~L~~L~Ls~n~l~~l-~~~l~~l~~L~~L~L~~ 309 (516)
+|.++.+|+.+.+..+ ++.| ...|.+|.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 4555555555555443 2222 23445555555555543
No 168
>1wlp_A Cytochrome B-245 light chain; SH3 domain, polyproline, oxidoreductase/signaling protein complex; NMR {Homo sapiens}
Probab=27.73 E-value=22 Score=20.15 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=10.0
Q ss_pred CCCCCCCCC-CCCCCcc
Q 010182 28 EYDVEQPDP-SSSGQAQ 43 (516)
Q Consensus 28 ~~~~~~~~~-~~~~~~~ 43 (516)
+.-|.|||. |.||.|.
T Consensus 2 ~~~ikqpP~nPPPRpPa 18 (26)
T 1wlp_A 2 PLGSKQPPSNPPPRPPA 18 (26)
T ss_dssp CCSSCCCCSSCCCCCCH
T ss_pred CccccCCCCCcCCCCch
Confidence 356778885 5566554
Done!