BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010184
(516 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|297805512|ref|XP_002870640.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
lyrata]
gi|297316476|gb|EFH46899.1| DNA repair and transcription factor XPB1 [Arabidopsis lyrata subsp.
lyrata]
Length = 767
Score = 947 bits (2448), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 446/482 (92%), Positives = 469/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L YH +EQL+LLGKVL+AGDD VGLEQL+ED D +AL KARR GSMSAMSGA+G VYM
Sbjct: 677 LGYHSQEEQLSLLGKVLNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSAMSGAKGRVYM 736
Query: 481 EY 482
EY
Sbjct: 737 EY 738
>gi|225426192|ref|XP_002273444.1| PREDICTED: DNA repair helicase XPB1-like [Vitis vinifera]
Length = 771
Score = 946 bits (2446), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/482 (95%), Positives = 474/482 (98%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 258 MLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 317
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI+KSCLCLATNAVSVDQWAFQFKLWSTI+D+QICRFTSDSKERFRGNAGVVVTT
Sbjct: 318 VSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTT 377
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 378 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 437
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 438 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 497
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV
Sbjct: 498 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 557
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK +D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 558 ERTKILEAFKTHKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 617
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
G+L+DR+AGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFK+ITSLPPPDSGAD
Sbjct: 618 GRLQDRLAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKIITSLPPPDSGAD 677
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL KARR GSMSAMSGA GMVYM
Sbjct: 678 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALQKARRSVGSMSAMSGASGMVYM 737
Query: 481 EY 482
EY
Sbjct: 738 EY 739
>gi|297742218|emb|CBI34367.3| unnamed protein product [Vitis vinifera]
Length = 850
Score = 943 bits (2437), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/482 (95%), Positives = 474/482 (98%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 337 MLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI+KSCLCLATNAVSVDQWAFQFKLWSTI+D+QICRFTSDSKERFRGNAGVVVTT
Sbjct: 397 VSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDEQICRFTSDSKERFRGNAGVVVTT 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 457 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 517 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 576
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV
Sbjct: 577 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 636
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK +D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 637 ERTKILEAFKTHKDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 696
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
G+L+DR+AGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFK+ITSLPPPDSGAD
Sbjct: 697 GRLQDRLAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKIITSLPPPDSGAD 756
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL KARR GSMSAMSGA GMVYM
Sbjct: 757 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALQKARRSVGSMSAMSGASGMVYM 816
Query: 481 EY 482
EY
Sbjct: 817 EY 818
>gi|9758045|dbj|BAB08508.1| DNA excision repair cross-complementing protein [Arabidopsis
thaliana]
Length = 754
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/482 (92%), Positives = 465/482 (96%), Gaps = 1/482 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 245 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 304
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 305 VSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVTT 364
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 365 YNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 424
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 425 LVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 484
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 485 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 544
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+ +NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 545 ERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 604
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 605 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 664
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L YH +EQL+LLGKVL+AGDD VGLEQL+ED D AL K RR GSMSAMSGA G VYM
Sbjct: 665 LGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRRSMGSMSAMSGANGRVYM 723
Query: 481 EY 482
EY
Sbjct: 724 EY 725
>gi|18422089|ref|NP_568591.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
gi|57013267|sp|Q9FUG4.1|XPB2_ARATH RecName: Full=DNA repair helicase XPB2; AltName: Full=ERCC3 homolog
2; AltName: Full=RAD25 homolog 2; Short=AtXPB2; AltName:
Full=XPB homolog 2
gi|11037022|gb|AAG27465.1|AF308595_1 putative DNA repair protein and transcription factor [Arabidopsis
thaliana]
gi|47606402|gb|AAT36214.1| putative DNA repair and transcription factor XBP2 [Arabidopsis
thaliana]
gi|332007286|gb|AED94669.1| DNA repair helicase XPB2 [Arabidopsis thaliana]
Length = 766
Score = 937 bits (2421), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 444/482 (92%), Positives = 465/482 (96%), Gaps = 1/482 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWA+QFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAYQFKLWSTIKDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+AFGGKRSEE+EKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMIAFGGKRSEEAEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDEKITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+ +NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKTVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L YH +EQL+LLGKVL+AGDD VGLEQL+ED D AL K RR GSMSAMSGA G VYM
Sbjct: 677 LGYHSQEEQLSLLGKVLNAGDDMVGLEQLEEDTDGKAL-KTRRSMGSMSAMSGANGRVYM 735
Query: 481 EY 482
EY
Sbjct: 736 EY 737
>gi|255537537|ref|XP_002509835.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
gi|223549734|gb|EEF51222.1| rad25/xp-B DNA repair helicase, putative [Ricinus communis]
Length = 768
Score = 935 bits (2416), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/482 (94%), Positives = 472/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 255 MLEEYDFRNDTVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 314
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQF+LWSTI+++QICRFTSDSKERF+GNAGVVVTT
Sbjct: 315 VSAACRIKKSCLCLATNAVSVDQWAFQFQLWSTIREEQICRFTSDSKERFQGNAGVVVTT 374
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT
Sbjct: 375 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 434
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 435 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 494
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH
Sbjct: 495 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHA 554
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKILQAFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 555 ERTKILQAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 614
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPP DSG D
Sbjct: 615 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPLDSGPD 674
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSY+ LDEQLALL KVL+AGDDAVGLEQL+EDADDIALHKARR GSMSAMSGA+GMVYM
Sbjct: 675 LSYYHLDEQLALLAKVLNAGDDAVGLEQLEEDADDIALHKARRSMGSMSAMSGAKGMVYM 734
Query: 481 EY 482
EY
Sbjct: 735 EY 736
>gi|47606403|gb|AAT36215.1| DNA repair and transcription factor XPB1 [Arabidopsis thaliana]
Length = 767
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/482 (93%), Positives = 470/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYH +EQL+LLGKV++AGDD VGLEQL+ED D +AL KARR GSMS MSG++GMVYM
Sbjct: 677 LSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYM 736
Query: 481 EY 482
EY
Sbjct: 737 EY 738
>gi|297805510|ref|XP_002870639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316475|gb|EFH46898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 779
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/482 (93%), Positives = 469/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 269 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 328
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 329 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 388
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAF GKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 389 YNMVAFSGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 448
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 449 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 508
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 509 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 568
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 569 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 628
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 629 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 688
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYH +EQL+LLGKVL+AGDD VGLEQL+ED D +AL KARR GSMS MSGA+GMVYM
Sbjct: 689 LSYHSQEEQLSLLGKVLNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSLMSGAKGMVYM 748
Query: 481 EY 482
EY
Sbjct: 749 EY 750
>gi|18422091|ref|NP_568592.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
gi|57013137|sp|Q38861.3|XPB1_ARATH RecName: Full=DNA repair helicase XPB1; AltName: Full=ERCC3 homolog
1; AltName: Full=Protein araXPB; AltName: Full=RAD25
homolog 1; Short=AtXPB1; AltName: Full=XPB homolog 1
gi|11771735|gb|AAC49987.2| putative DNA repair protein and transcription factor [Arabidopsis
thaliana]
gi|14517424|gb|AAK62602.1| AT5g41370/MYC6_8 [Arabidopsis thaliana]
gi|21360401|gb|AAM47316.1| AT5g41370/MYC6_8 [Arabidopsis thaliana]
gi|332007287|gb|AED94670.1| DNA repair helicase XPB1 [Arabidopsis thaliana]
Length = 767
Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/482 (93%), Positives = 470/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 317 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 497 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 617 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 676
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYH +EQL+LLGKV++AGDD VGLEQL+ED D +AL KARR GSMS MSG++GMVYM
Sbjct: 677 LSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYM 736
Query: 481 EY 482
EY
Sbjct: 737 EY 738
>gi|9758046|dbj|BAB08509.1| DNA excision repair cross-complementing protein; similar to human
Xeroderma pigmentosum group B DNA repair protein
[Arabidopsis thaliana]
Length = 755
Score = 929 bits (2402), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/482 (93%), Positives = 470/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNPDL+MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 245 MLEEYDFRNDNVNPDLDMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 304
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RIKKSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 305 VSAAARIKKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 364
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEE+RNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 365 YNMVAFGGKRSEESEKIIEEMRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 424
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 425 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 484
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 485 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 544
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK S+D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 545 ERTKILEAFKTSKDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 604
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+G+
Sbjct: 605 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDAGSS 664
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYH +EQL+LLGKV++AGDD VGLEQL+ED D +AL KARR GSMS MSG++GMVYM
Sbjct: 665 LSYHSQEEQLSLLGKVMNAGDDLVGLEQLEEDTDGMALQKARRSMGSMSVMSGSKGMVYM 724
Query: 481 EY 482
EY
Sbjct: 725 EY 726
>gi|356513365|ref|XP_003525384.1| PREDICTED: DNA repair helicase XPB1-like [Glycine max]
Length = 768
Score = 929 bits (2401), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/482 (93%), Positives = 469/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 255 MLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 314
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+++QICRFTSDSKERFRGNAGVVVTT
Sbjct: 315 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTT 374
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 375 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 434
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 435 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 494
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+QALYVMNPNKFRACEFLI FHE+ RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV
Sbjct: 495 KRQALYVMNPNKFRACEFLINFHERTRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 554
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKILQAFK S+D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 555 ERTKILQAFKTSKDINTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 614
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD G +
Sbjct: 615 GKLEDRMAGGKEEYNAFFYSLVSIDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDEGPN 674
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYHRL++QLALLGKVLSAGDD VGLEQLDEDAD+IAL ARR GSMSAMSGA+GMVYM
Sbjct: 675 LSYHRLEDQLALLGKVLSAGDDQVGLEQLDEDADEIALQSARRSQGSMSAMSGAKGMVYM 734
Query: 481 EY 482
EY
Sbjct: 735 EY 736
>gi|449530460|ref|XP_004172213.1| PREDICTED: DNA repair helicase XPB1-like, partial [Cucumis sativus]
Length = 725
Score = 929 bits (2400), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/482 (93%), Positives = 469/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NPDL+MELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 213 MLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 272
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RI+KSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 273 VSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 332
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT
Sbjct: 333 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 392
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 393 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 452
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 453 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 512
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK SRD+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 513 ERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 572
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPP D+GA+
Sbjct: 573 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAE 632
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYHRLD+QLALLGKVL+AGDD VGLEQL++DAD IAL ARR GSMSAMSGA GMVYM
Sbjct: 633 LSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSKGSMSAMSGANGMVYM 692
Query: 481 EY 482
EY
Sbjct: 693 EY 694
>gi|356528573|ref|XP_003532875.1| PREDICTED: DNA repair helicase XPB1-like [Glycine max]
Length = 768
Score = 928 bits (2398), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/482 (93%), Positives = 468/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 255 MLEEYDFRNDTVNPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 314
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+++QICRFTSDSKERFRGNAGVVVTT
Sbjct: 315 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIREEQICRFTSDSKERFRGNAGVVVTT 374
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 375 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 434
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 435 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 494
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+QALYVMNPNKFRACEFLI FHE RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV
Sbjct: 495 KRQALYVMNPNKFRACEFLINFHEGTRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 554
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKILQAFK S+D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 555 ERTKILQAFKTSKDINTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 614
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GKLEDRMAGGKEEYNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD G +
Sbjct: 615 GKLEDRMAGGKEEYNAFFYSLVSIDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDEGPN 674
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYHRL++QLALLGKVLSAGDD VGLEQLDEDAD+IAL ARR GSMSAMSGA+GMVYM
Sbjct: 675 LSYHRLEDQLALLGKVLSAGDDQVGLEQLDEDADEIALQSARRSQGSMSAMSGAKGMVYM 734
Query: 481 EY 482
EY
Sbjct: 735 EY 736
>gi|449452290|ref|XP_004143892.1| PREDICTED: DNA repair helicase XPB1-like [Cucumis sativus]
Length = 768
Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/482 (93%), Positives = 469/482 (97%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NPDL+MELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 256 MLEEYDFRNDTINPDLDMELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 315
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAA RI+KSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGNAGVVVTT
Sbjct: 316 VSAASRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNAGVVVTT 375
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT
Sbjct: 376 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 435
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 436 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 495
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH+
Sbjct: 496 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHI 555
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL+AFK SRD+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 556 ERTKILEAFKTSRDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 615
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPP D+GA+
Sbjct: 616 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADAGAE 675
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYHRLD+QLALLGKVL+AGDD VGLEQL++DAD IAL ARR GSMSAMSGA GMVYM
Sbjct: 676 LSYHRLDDQLALLGKVLNAGDDMVGLEQLEDDADQIALDAARRSKGSMSAMSGANGMVYM 735
Query: 481 EY 482
EY
Sbjct: 736 EY 737
>gi|148905942|gb|ABR16132.1| unknown [Picea sitchensis]
Length = 772
Score = 922 bits (2383), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/482 (93%), Positives = 466/482 (96%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDLN+ELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 259 MLEEYDFRNDTVNPDLNVELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI+KSCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSKERFRGN GVVVTT
Sbjct: 319 VSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKERFRGNVGVVVTT 378
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 379 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 438
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT+EFF+EYLKKENSK
Sbjct: 439 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTREFFAEYLKKENSK 498
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH
Sbjct: 499 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHS 558
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL AFK S D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 559 ERTRILYAFKHSPDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 618
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD+GAD
Sbjct: 619 GKHQDRMAGGKEEYNAFFYSLVSNDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDTGAD 678
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L+YH L++QLALL KVL+AGDDAVGLEQL+EDADDI L KARR GSMSAMSGA GMVYM
Sbjct: 679 LNYHTLEDQLALLTKVLNAGDDAVGLEQLEEDADDITLLKARRSVGSMSAMSGASGMVYM 738
Query: 481 EY 482
EY
Sbjct: 739 EY 740
>gi|326521180|dbj|BAJ96793.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 762
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/501 (87%), Positives = 464/501 (92%), Gaps = 8/501 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 258 MLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 317
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+FRG AGVVVTT
Sbjct: 318 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHISRFTSDNKEKFRGMAGVVVTT 377
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 378 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 437
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 438 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 497
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMIYGATSH
Sbjct: 498 KKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTAYAMKLRKPMIYGATSHA 557
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S ++NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 558 ERTRILYQFKNSPEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 617
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPP+ G +
Sbjct: 618 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEEGPN 677
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+H LDEQL LLGKVLSAGDD +G+E L+ED+D AL KARR AG MSA SGA GMVYM
Sbjct: 678 LSFHTLDEQLDLLGKVLSAGDDMIGVEHLEEDSDGKALLKARRSAGLMSAFSGAGGMVYM 737
Query: 481 EY-------RYDPWQKQ-LFK 493
EY + DP ++ LFK
Sbjct: 738 EYNKGKGAKKKDPAKRHTLFK 758
>gi|357136004|ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Brachypodium distachyon]
Length = 766
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/482 (90%), Positives = 456/482 (94%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 259 MLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+FRG AGVVVTT
Sbjct: 319 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIRDEHISRFTSDNKEKFRGMAGVVVTT 378
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 379 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 438
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 439 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 498
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMIYGATSH
Sbjct: 499 KKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTAYAMKLRKPMIYGATSHA 558
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S ++NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 559 ERTRILYQFKNSPEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 618
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPPD G +
Sbjct: 619 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPDEGPN 678
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+H LDEQL LLGKVL+AGDD +G+E L+ED+D AL KARR AG MSA SGA GMVYM
Sbjct: 679 LSFHTLDEQLDLLGKVLNAGDDMIGVEHLEEDSDGKALLKARRSAGLMSAFSGAGGMVYM 738
Query: 481 EY 482
EY
Sbjct: 739 EY 740
>gi|224058459|ref|XP_002299520.1| predicted protein [Populus trichocarpa]
gi|222846778|gb|EEE84325.1| predicted protein [Populus trichocarpa]
Length = 803
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/502 (90%), Positives = 463/502 (92%), Gaps = 20/502 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 272 MLEEYDFRNDTVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 331
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQF LWS I DQICRFTSDSKERF+GNAGVVVTT
Sbjct: 332 VSAACRIKKSCLCLATNAVSVDQWAFQFSLWSDISQDQICRFTSDSKERFKGNAGVVVTT 391
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 392 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 451
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 452 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 511
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQALYVMNPNKFRACEFLIRFHE+QR DKIIVFADNLFALTEYAMKL KPMIYGATSH
Sbjct: 512 KKQALYVMNPNKFRACEFLIRFHEEQRRDKIIVFADNLFALTEYAMKLHKPMIYGATSHA 571
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL AFK S ++NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 572 ERTKILHAFKTSSEVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 631
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQ--------------------EMFYSTKRQQFLI 400
GKL+DRMAGGKEEYNAFFYSLVSTDTQ EM+YSTKRQQFLI
Sbjct: 632 GKLQDRMAGGKEEYNAFFYSLVSTDTQMIDADSSWRSISYLRCFFFLEMYYSTKRQQFLI 691
Query: 401 DQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK 460
DQGYSFKVITSLPP DSGADLSY+ LD+QL LL KVLSAGDDAVGLEQLDEDADDIALHK
Sbjct: 692 DQGYSFKVITSLPPADSGADLSYNSLDDQLGLLAKVLSAGDDAVGLEQLDEDADDIALHK 751
Query: 461 ARRIAGSMSAMSGAQGMVYMEY 482
ARR GSMS MSGA GMVYMEY
Sbjct: 752 ARRYMGSMSVMSGANGMVYMEY 773
>gi|242054073|ref|XP_002456182.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
gi|241928157|gb|EES01302.1| hypothetical protein SORBIDRAFT_03g031750 [Sorghum bicolor]
Length = 767
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/482 (89%), Positives = 454/482 (94%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 259 MLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+F G A VVVTT
Sbjct: 319 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFTGMASVVVTT 378
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 379 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 438
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 439 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 498
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMI+GATSH
Sbjct: 499 KKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTAYAMKLRKPMIFGATSHA 558
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 559 ERTRILYQFKNSPEVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 618
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPP+ G +
Sbjct: 619 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEEGPN 678
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS++ LDEQL LL KVL+AGDD +G+E+L+ED+D AL +ARR AGSMSA SGA GMVYM
Sbjct: 679 LSFYTLDEQLELLSKVLNAGDDMIGVERLEEDSDGKALLRARRSAGSMSAFSGAGGMVYM 738
Query: 481 EY 482
EY
Sbjct: 739 EY 740
>gi|414880902|tpg|DAA58033.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
Length = 767
Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/482 (88%), Positives = 453/482 (93%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 259 MLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+F G AGVVVTT
Sbjct: 319 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRFTSDNKEKFTGMAGVVVTT 378
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 379 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 438
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 439 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 498
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMI+GATSH
Sbjct: 499 KKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTTYAMKLRKPMIFGATSHA 558
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 559 ERTRILYQFKNSPEVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 618
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPP + G +
Sbjct: 619 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPAEEGPN 678
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSY+ LDEQL LL L+AGDD +G+E+L+ED+D AL +ARR AGSMSA SGA GMVYM
Sbjct: 679 LSYYTLDEQLELLSMALNAGDDMIGVERLEEDSDGKALIRARRSAGSMSAFSGAGGMVYM 738
Query: 481 EY 482
EY
Sbjct: 739 EY 740
>gi|222619087|gb|EEE55219.1| hypothetical protein OsJ_03086 [Oryza sativa Japonica Group]
Length = 766
Score = 900 bits (2325), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/482 (88%), Positives = 452/482 (93%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+FRG AGVVVTT
Sbjct: 317 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFRGMAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LY MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMIYG+TSHV
Sbjct: 497 KKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSYAMKLRKPMIYGSTSHV 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTRILHQFKNSSDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPP+ +
Sbjct: 617 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEELPN 676
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y+ L++QL LL ++LSA DD +G+E L+ED+D AL KARR AGSMSA SG+ GMVYM
Sbjct: 677 LKYYTLNDQLELLAQLLSARDDMIGIEHLEEDSDGKALMKARRSAGSMSAFSGSGGMVYM 736
Query: 481 EY 482
EY
Sbjct: 737 EY 738
>gi|218188886|gb|EEC71313.1| hypothetical protein OsI_03346 [Oryza sativa Indica Group]
Length = 766
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/482 (88%), Positives = 451/482 (93%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+FRG AGVVVTT
Sbjct: 317 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFRGMAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LY MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMIYG+TSHV
Sbjct: 497 KKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSYAMKLRKPMIYGSTSHV 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 557 ERTRILHQFKNSSDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPPP+ +
Sbjct: 617 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPPEELPN 676
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y+ L++QL LL + LSA DD +G+E L+ED+D AL KARR AGSMSA SG+ GMVYM
Sbjct: 677 LKYYTLNDQLELLAQSLSARDDMIGIEHLEEDSDGKALMKARRSAGSMSAFSGSGGMVYM 736
Query: 481 EY 482
EY
Sbjct: 737 EY 738
>gi|302773734|ref|XP_002970284.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
gi|300161800|gb|EFJ28414.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
Length = 713
Score = 876 bits (2264), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/482 (85%), Positives = 453/482 (93%), Gaps = 1/482 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND+VNPDL++ELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 205 MLEEYDFRNDSVNPDLSIELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 264
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI+KSCLCLATNAVSVDQWAFQFKLWSTI+DDQI RFTSDSK++F+ N GVVVTT
Sbjct: 265 VSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQISRFTSDSKDKFKSNVGVVVTT 324
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAF GKRSEESEK+IE I++REWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 325 YNMVAFKGKRSEESEKVIELIKSREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 384
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGG+IANVQCAEVWCPMTKEF++EYLKKEN +
Sbjct: 385 LVREDERITDLNFLIGPKLYEANWLDLVKGGYIANVQCAEVWCPMTKEFYAEYLKKEN-R 443
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+QALYVMNPNKFRACEFLIRFHEQQRGDKIIVF+DNLFAL EYA KL++P IYG TSH
Sbjct: 444 KQQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFSDNLFALREYATKLKRPFIYGPTSHH 503
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL AFK S D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 504 ERTKILYAFKHSPDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 563
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DR+ GG EE+NAFFYSLVSTDTQEM+YS+KRQQFLIDQGYSFKV+TSLPP DSGAD
Sbjct: 564 GKPKDRVKGGTEEFNAFFYSLVSTDTQEMYYSSKRQQFLIDQGYSFKVLTSLPPADSGAD 623
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+HRL++QL LL KVL+AG+DA G+EQL+ DADDI +ARRIAGSMSA+SG +G YM
Sbjct: 624 LSFHRLEDQLDLLSKVLNAGEDAAGVEQLEHDADDITNLRARRIAGSMSALSGGKGRSYM 683
Query: 481 EY 482
E+
Sbjct: 684 EF 685
>gi|302793364|ref|XP_002978447.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
gi|300153796|gb|EFJ20433.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
Length = 733
Score = 875 bits (2262), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 414/482 (85%), Positives = 453/482 (93%), Gaps = 1/482 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND+VNPDL++ELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 225 MLEEYDFRNDSVNPDLSIELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 284
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI+KSCLCLATNAVSVDQWAFQFKLWSTI+DDQI RFTSDSK++F+ N GVVVTT
Sbjct: 285 VSAACRIRKSCLCLATNAVSVDQWAFQFKLWSTIRDDQISRFTSDSKDKFKSNVGVVVTT 344
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAF GKRSEESEK+IE I++REWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 345 YNMVAFKGKRSEESEKVIELIKSREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 404
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGG+IANVQCAEVWCPMTKEF++EYLKKEN +
Sbjct: 405 LVREDERITDLNFLIGPKLYEANWLDLVKGGYIANVQCAEVWCPMTKEFYAEYLKKEN-R 463
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+QALYVMNPNKFRACEFLIRFHEQQRGDKIIVF+DNLFAL EYA KL++P IYG TSH
Sbjct: 464 KQQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFSDNLFALREYATKLKRPFIYGPTSHH 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL AFK S D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 524 ERTKILYAFKHSPDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DR+ GG EE+NAFFYSLVSTDTQEM+YS+KRQQFLIDQGYSFKV+TSLPP DSGAD
Sbjct: 584 GKPKDRVKGGTEEFNAFFYSLVSTDTQEMYYSSKRQQFLIDQGYSFKVLTSLPPADSGAD 643
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+HRL++QL LL KVL+AG+DA G+EQL+ DADDI +ARRIAGSMSA+SG +G YM
Sbjct: 644 LSFHRLEDQLDLLSKVLNAGEDAAGVEQLEHDADDITNLRARRIAGSMSALSGGKGRSYM 703
Query: 481 EY 482
E+
Sbjct: 704 EF 705
>gi|168044023|ref|XP_001774482.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674194|gb|EDQ60706.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 734
Score = 870 bits (2249), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/482 (85%), Positives = 445/482 (92%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRNDNVNP L+++LKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 224 MLEEYDFRNDNVNPTLDIKLKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 283
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI KS LCLATNAVSVDQWAFQFKLWST+ D QI RFTSDSKERFRG+ GVVVTT
Sbjct: 284 VSAACRISKSVLCLATNAVSVDQWAFQFKLWSTVGDHQISRFTSDSKERFRGSVGVVVTT 343
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSEES+KIIEEI+NREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 344 YNMVAFGGKRSEESQKIIEEIQNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 403
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERI+DLNFLIGPKLYEANWLDLVKGG+IANVQCAEVWCPMTKEF+ EYLKKENS+
Sbjct: 404 LVREDERISDLNFLIGPKLYEANWLDLVKGGYIANVQCAEVWCPMTKEFYREYLKKENSR 463
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LYVMNPNKFRACEFLIRFHE+QRGDKIIVF+DNLFAL EYA KLRKP IYG TSH
Sbjct: 464 KKQGLYVMNPNKFRACEFLIRFHEEQRGDKIIVFSDNLFALREYATKLRKPFIYGPTSHH 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL AFK S +NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 524 ERTRILYAFKHSPQVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGG EE+NAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPP DSG +
Sbjct: 584 GKHKDRMAGGTEEFNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPADSGPE 643
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSYH LD+Q+ LL KVL AG+D++G+EQLDED DDI ++ R G+MS +SGA+G +Y
Sbjct: 644 LSYHSLDDQMNLLTKVLHAGEDSIGIEQLDEDVDDITRNRFTRRYGNMSNISGAEGRLYY 703
Query: 481 EY 482
EY
Sbjct: 704 EY 705
>gi|302793029|ref|XP_002978280.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
gi|300154301|gb|EFJ20937.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
Length = 747
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/482 (84%), Positives = 447/482 (92%), Gaps = 1/482 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+L++ELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 238 LLEEYDFRNDTVNPELSIELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 297
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI++SCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSK++F+GNA V+VTT
Sbjct: 298 VSAACRIRRSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKDKFKGNACVIVTT 357
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAF GKRSEESEK+IE IR+REWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 358 YNMVAFKGKRSEESEKVIELIRSREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 417
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVK G+IANVQCAEVWCPMTKEF++EYLKKEN K
Sbjct: 418 LVREDERITDLNFLIGPKLYEANWLDLVKNGYIANVQCAEVWCPMTKEFYAEYLKKEN-K 476
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+QALYVMNPNKFRACEFL+RFHEQQRGDKIIVF+DNLFAL EYA KL+KP IYG TSH
Sbjct: 477 KQQALYVMNPNKFRACEFLVRFHEQQRGDKIIVFSDNLFALREYATKLKKPFIYGPTSHH 536
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL AFK S D+NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 537 ERTKILYAFKHSPDVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 596
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK DR+ GG EEYNAFFYSLVSTDTQEM+YS+KRQQFLIDQGYSFKV+T+LPPPDSG D
Sbjct: 597 GKPSDRVRGGSEEYNAFFYSLVSTDTQEMYYSSKRQQFLIDQGYSFKVLTNLPPPDSGED 656
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +L +Q+ LL KVL+AG+DAVG+E+L+ DADDI K R AGSMSAMSG +G +Y
Sbjct: 657 LGYSKLQDQMDLLSKVLNAGEDAVGVEKLEHDADDITNLKIHRSAGSMSAMSGGKGRLYT 716
Query: 481 EY 482
E+
Sbjct: 717 EF 718
>gi|302765739|ref|XP_002966290.1| hypothetical protein SELMODRAFT_230853 [Selaginella moellendorffii]
gi|300165710|gb|EFJ32317.1| hypothetical protein SELMODRAFT_230853 [Selaginella moellendorffii]
Length = 711
Score = 863 bits (2230), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/482 (85%), Positives = 448/482 (92%), Gaps = 1/482 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+L++ELKP AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 210 LLEEYDFRNDTVNPELSIELKPQAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 269
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRI++SCLCLATNAVSVDQWAFQFKLWSTI+DDQICRFTSDSK++F+GNA V+VTT
Sbjct: 270 VSAACRIRRSCLCLATNAVSVDQWAFQFKLWSTIRDDQICRFTSDSKDKFKGNACVIVTT 329
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAF GKRSEESEK+IE IR+REWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 330 YNMVAFKGKRSEESEKVIELIRSREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 389
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVK G+IANVQCAEVWCPMTKEF++EYLKKEN K
Sbjct: 390 LVREDERITDLNFLIGPKLYEANWLDLVKNGYIANVQCAEVWCPMTKEFYAEYLKKEN-K 448
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+QALYVMNPNKFRACEFL+RFHEQQRGDKIIVF+DNLFAL EYA KL+KP IYG TSH
Sbjct: 449 KQQALYVMNPNKFRACEFLVRFHEQQRGDKIIVFSDNLFALREYATKLKKPFIYGPTSHQ 508
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERTKIL AFK S D+NT+FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 509 ERTKILYAFKHSLDVNTVFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 568
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK DR+ GG EEYNAFFYSLVSTDTQEM+YS+KRQQFLIDQGYSFKV+T+LPP DSG D
Sbjct: 569 GKPCDRVRGGSEEYNAFFYSLVSTDTQEMYYSSKRQQFLIDQGYSFKVLTNLPPSDSGTD 628
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LSY L +Q+ LL KVL+AG+DA G+E+L+ DADDIA K RR AGSMSAMSGA+G +Y
Sbjct: 629 LSYSNLQDQMDLLLKVLNAGEDAAGVEKLEHDADDIANLKIRRTAGSMSAMSGAKGRLYT 688
Query: 481 EY 482
E+
Sbjct: 689 EF 690
>gi|414880901|tpg|DAA58032.1| TPA: hypothetical protein ZEAMMB73_851798 [Zea mays]
Length = 702
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/436 (91%), Positives = 415/436 (95%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL+MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 259 MLEEYDFRNDTVNPDLDMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+F G AGVVVTT
Sbjct: 319 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDENISRFTSDNKEKFTGMAGVVVTT 378
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 379 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 438
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 439 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 498
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMI+GATSH
Sbjct: 499 KKQVLYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTTYAMKLRKPMIFGATSHA 558
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ERT+IL FK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK
Sbjct: 559 ERTRILYQFKNSPEVNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 618
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
GK +DRMAGGKEEYNAFFYSLVSTDTQEM+YSTKRQQFLIDQGYSFKVITSLPP + G +
Sbjct: 619 GKHQDRMAGGKEEYNAFFYSLVSTDTQEMYYSTKRQQFLIDQGYSFKVITSLPPAEEGPN 678
Query: 421 LSYHRLDEQLALLGKV 436
LSY+ LDEQL LL V
Sbjct: 679 LSYYTLDEQLELLSMV 694
>gi|384252657|gb|EIE26133.1| DNA repair helicase rad25 [Coccomyxa subellipsoidea C-169]
Length = 815
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/493 (72%), Positives = 412/493 (83%), Gaps = 8/493 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN DLN+ELKPH Q RPYQEKS++KMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 304 MLEEYDFRNDTVNADLNIELKPHVQHRPYQEKSMAKMFGNGRARSGIIVLPCGAGKSLVG 363
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AA RIKKS LCL TN+VSVDQW QFKLW+ +QD QI RFTSD KE F G +GV VTT
Sbjct: 364 ITAAARIKKSVLCLVTNSVSVDQWKHQFKLWTNLQDHQISRFTSDQKELFAGVSGVTVTT 423
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MV++ G+RSEES ++++EI +REWGLLL+DEVHVVPA MFRKVI + K+HCKLGLTAT
Sbjct: 424 YTMVSYSGRRSEESARVMDEIASREWGLLLLDEVHVVPAQMFRKVIGIVKAHCKLGLTAT 483
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERI+DLNFLIGPKLYEANWLDL + G IANVQCAEVWCPMTKEF+ EYLKK+N+
Sbjct: 484 LVREDERISDLNFLIGPKLYEANWLDLTRAGHIANVQCAEVWCPMTKEFYREYLKKDNAA 543
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
++Q LYVMNPNKF+AC+FLI++HEQ RGDKIIVF+DN+FAL EYA +LRKP IYG TSH
Sbjct: 544 RRQLLYVMNPNKFQACQFLIQYHEQVRGDKIIVFSDNIFALREYAQRLRKPFIYGGTSHQ 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA- 359
ERT++L AFK S +++T+FLSKVGDNSIDIPEANV+IQISSHAGSRRQEAQRLGRILRA
Sbjct: 604 ERTRVLAAFKRSAEVSTVFLSKVGDNSIDIPEANVLIQISSHAGSRRQEAQRLGRILRAK 663
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
KGK + G +E+NAFFY+LVS DTQEM+YSTKRQQFLIDQGYSFKVIT+L GA
Sbjct: 664 KGKPGSQ---GADEFNAFFYTLVSKDTQEMYYSTKRQQFLIDQGYSFKVITNLLDAAGGA 720
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK---ARRIAGSMSAMSGAQG 476
L DEQL +L KVL+AG+D G+E D DD+ K A+R AGS++AMSGA G
Sbjct: 721 SLQMSTRDEQLDVLAKVLAAGEDEAGVEVADV-TDDVTRTKKALAQRTAGSLAAMSGAHG 779
Query: 477 MVYMEYRYDPWQK 489
+ YMEY + QK
Sbjct: 780 LTYMEYGTNKAQK 792
>gi|308802017|ref|XP_003078322.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]
gi|116056774|emb|CAL53063.1| DNA repair and transcription factor XPB1 (ISS) [Ostreococcus tauri]
Length = 812
Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 336/488 (68%), Positives = 385/488 (78%), Gaps = 8/488 (1%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND NPDLN+ELKP + RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G+
Sbjct: 285 LEEYDFRNDTRNPDLNIELKPMTRIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLTGI 344
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVVT 119
+AA RI+KSCLCL T++VSVDQW+ QFKLW+ + D I RFTS +K+ F G A V VT
Sbjct: 345 AAAARIRKSCLCLCTSSVSVDQWSAQFKLWTNLTDLNIVRFTSQNKDEFPPPGEACVCVT 404
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TYNMV+ GGKRSE SE+I+E IR+REWG +L+DEVHVVPA MFRKVI +TK+HCKLGLTA
Sbjct: 405 TYNMVSAGGKRSEGSERILEAIRSREWGCMLLDEVHVVPAAMFRKVIGITKAHCKLGLTA 464
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVRED+++ LNFLIGPKLYEANWLDL + G IANVQC EVWCPMT EFF +Y S
Sbjct: 465 TLVREDDKVDHLNFLIGPKLYEANWLDLQRDGHIANVQCVEVWCPMTAEFFRKYCDSNYS 524
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
KKQ LY MNPNKF AC+FL++FHEQQR DK+IVF+DN+FAL EYA LR+P+IYG TSH
Sbjct: 525 NKKQVLYCMNPNKFMACQFLMQFHEQQRKDKVIVFSDNIFALREYATALRRPLIYGDTSH 584
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT++L AFK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR
Sbjct: 585 AERTRVLHAFKYSNEINTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRP 644
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K +E+NAFFYSLVSTDT EM+YSTKRQQFLI QGY+FKV+T L P
Sbjct: 645 KAAQLSGKKTNADEHNAFFYSLVSTDTAEMYYSTKRQQFLIQQGYAFKVVTDLIGPQDKQ 704
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-----ALHKARRIAGSMSAMSGA 474
L Y ++QL LL KVLSAG+ G E L +D D I ARR AGSM+A+SGA
Sbjct: 705 QLMYSTQEKQLDLLAKVLSAGEAEAGEEVLPDDEDAIRKAQKPAGAARRTAGSMTALSGA 764
Query: 475 QGMVYMEY 482
G YME+
Sbjct: 765 DG-AYMEF 771
>gi|145344427|ref|XP_001416734.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576960|gb|ABO95027.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 781
Score = 680 bits (1755), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/488 (68%), Positives = 385/488 (78%), Gaps = 8/488 (1%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND NPDL +ELKP + RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G+
Sbjct: 251 LEEYDFRNDTRNPDLGIELKPMTRIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLTGI 310
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVVT 119
+AA RI+KSCLCL T++VSVDQWA QFKLW+ + D I RFTS +K+ F A V VT
Sbjct: 311 AAAARIRKSCLCLCTSSVSVDQWAAQFKLWTNLTDAHIVRFTSQNKDDFPPPDEACVCVT 370
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TYNMV+ GGKRSE SE+I+E IR+REWG +L+DEVHVVPA MFRKVI +TK+HCKLGLTA
Sbjct: 371 TYNMVSAGGKRSEGSERILEAIRSREWGCMLLDEVHVVPAAMFRKVIGITKAHCKLGLTA 430
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVRED+++ LNFLIGPKLYEANWLDL + G IANVQC EVWCPMT EFF +Y +
Sbjct: 431 TLVREDDKVDHLNFLIGPKLYEANWLDLQRDGHIANVQCVEVWCPMTAEFFRKYCDPNFN 490
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
KKQ LY MNPNKF AC+FL++FHEQQR DK+IVF+DN+FAL EYA LR+P+IYG TSH
Sbjct: 491 NKKQVLYCMNPNKFMACQFLMQFHEQQRKDKVIVFSDNIFALREYATALRRPLIYGDTSH 550
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT++L AFK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR
Sbjct: 551 AERTRVLHAFKYSNEINTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRP 610
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K +E+NAFFYSLVSTDT EM+YSTKRQQFLI QGY+FKV+T L P
Sbjct: 611 KAAQLSGKKTNADEHNAFFYSLVSTDTAEMYYSTKRQQFLIQQGYAFKVVTDLIGPQDKP 670
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-ALHK----ARRIAGSMSAMSGA 474
L Y ++QL LL KVLSAG+ G E L ED D I HK ARR AGS++A+SGA
Sbjct: 671 QLMYSTQEKQLDLLAKVLSAGEAEAGEEVLPEDEDAIRQAHKPVGAARRTAGSITALSGA 730
Query: 475 QGMVYMEY 482
G Y+E+
Sbjct: 731 DG-AYLEF 737
>gi|303271055|ref|XP_003054889.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462863|gb|EEH60141.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 803
Score = 670 bits (1729), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/487 (67%), Positives = 383/487 (78%), Gaps = 12/487 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND NPDL++ LKP + RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G+
Sbjct: 305 LEEYDFRNDTRNPDLDIALKPMTRIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLTGI 364
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVVT 119
+AA R++KSCLCL T++VSVDQWA QFKLW+ + D +I RFTS +KE F A V VT
Sbjct: 365 AAASRVRKSCLCLCTSSVSVDQWAAQFKLWTNLTDREIVRFTSQTKEEFPPVDQACVCVT 424
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TYNMV+ GGKRSEES +++E++R REWG++L+DEVHVVPA MFRKVI +TK+HCKLGLTA
Sbjct: 425 TYNMVSAGGKRSEESRRVLEQMRGREWGIMLLDEVHVVPAAMFRKVIGITKAHCKLGLTA 484
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVREDE++ LNFLIGPKLYEANWLDL + G IANVQC EVWCPMT EFF++YL+ E
Sbjct: 485 TLVREDEKVEHLNFLIGPKLYEANWLDLQRDGHIANVQCVEVWCPMTAEFFTKYLEPECK 544
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
KKQALY MNPNKF AC++L++FHEQQR DKIIVF+DN+FAL EYA LR+P+IYG TSH
Sbjct: 545 PKKQALYCMNPNKFMACQYLMQFHEQQRKDKIIVFSDNIFALREYATALRRPLIYGETSH 604
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT++L AFK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR
Sbjct: 605 AERTRVLHAFKFSNEINTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRP 664
Query: 360 KGKLEDRMAGGKE------EYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
K MA GKE E+NAFFYSLVS DT EM+YS KRQQFLI QGY+FKV+T L
Sbjct: 665 KAAALAAMAAGKEVKVGAGEHNAFFYSLVSKDTDEMYYSQKRQQFLIQQGYAFKVVTDLI 724
Query: 414 PPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----ALHKARRIAGSMS 469
L Y ++Q+ LL +VL G+ G E L D DDI ARR GSM
Sbjct: 725 GDGDRPQLHYSTREKQIELLERVLRLGEAEAGEELLPADEDDIRRGGKAAAARRTQGSML 784
Query: 470 AMSGAQG 476
A+SGA+G
Sbjct: 785 ALSGAKG 791
>gi|66828931|ref|XP_647819.1| transcription factor IIH subunit [Dictyostelium discoideum AX4]
gi|74955815|sp|O00835.1|ERCC3_DICDI RecName: Full=TFIIH basal transcription factor complex helicase
repB subunit; AltName: Full=DNA excision repair
cross-complementing protein-3 homolog; AltName: Full=DNA
repair helicase repB; AltName: Full=DNA repair protein B
gi|2058508|gb|AAB62732.1| RepB [Dictyostelium discoideum]
gi|60469985|gb|EAL67966.1| transcription factor IIH subunit [Dictyostelium discoideum AX4]
Length = 800
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/509 (64%), Positives = 384/509 (75%), Gaps = 24/509 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+LN++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 293 VLEEYDFRNDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW +QFKLWS I++ QI +FTSD+KE+ AGV +TT
Sbjct: 353 ITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEERQISKFTSDNKEKISNVAGVTITT 412
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+RS ES KI+ EI NREWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTAT
Sbjct: 413 YTMVAFGGRRSAESLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTAT 472
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL ++
Sbjct: 473 LLREDEKIQDLNFLIGPKLYEANWLDLQKAGFLANVSCSEVWCPMTAEFYKEYLINDSQG 532
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNKFRACE+LIRFHE QRGDKIIVF+DN++AL +YA L + IYG TS
Sbjct: 533 KKKLLYTMNPNKFRACEYLIRFHE-QRGDKIIVFSDNVYALQKYAKGLGRYFIYGPTSGH 591
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ + TIF+SKVGD SIDIPEA VIIQ+SSH GSRRQEAQRLGRILR K
Sbjct: 592 ERMSILSKFQHDPTVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPK 651
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
K + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVI+ LP D +
Sbjct: 652 PKSDGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGIDQEVN 704
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L Y +QL LL +VL G+D+ E L+ED DDI A +R GS A
Sbjct: 705 LKYSSKQDQLDLLAQVLGEGEDSGKNEILEEDFDDITRGAKKSKSSAPTVSRTTGGSTRA 764
Query: 471 MSGAQGMVYMEYRYD------PWQKQLFK 493
+SG M YMEY+ P Q LFK
Sbjct: 765 LSGGNDMNYMEYQAPAIYKSIPTQHALFK 793
>gi|330791017|ref|XP_003283591.1| hypothetical protein DICPUDRAFT_96425 [Dictyostelium purpureum]
gi|325086451|gb|EGC39840.1| hypothetical protein DICPUDRAFT_96425 [Dictyostelium purpureum]
Length = 792
Score = 657 bits (1694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/497 (65%), Positives = 379/497 (76%), Gaps = 22/497 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+LN++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 291 VLEEYDFRNDTVNPNLNIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW +QFKLWS I++ I +FTSD+KE+ AGV +TT
Sbjct: 351 ITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEEKMISKFTSDNKEKLCSLAGVTITT 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+RS +S KI+ EI NREWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTAT
Sbjct: 411 YTMVAFGGRRSADSLKIMNEITNREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPM+ EF+ EYL ++
Sbjct: 471 LLREDEKIQDLNFLIGPKLYEANWLDLQKSGFLANVSCSEVWCPMSAEFYKEYLINDSQC 530
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNKFRACE+LI+FHE QRGDKIIVF+DN++AL +YA L K IYG TS
Sbjct: 531 KKKLLYTMNPNKFRACEYLIKFHE-QRGDKIIVFSDNVYALQKYAKGLGKYFIYGPTSGH 589
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ + TIF+SKVGD SIDIPEA VIIQ+SSH GSRRQEAQRLGRILR K
Sbjct: 590 ERMSILSKFQHDPKVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQEAQRLGRILRPK 649
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
K + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVI+ LP D
Sbjct: 650 PKSDGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGLDQDPT 702
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA--------------LHKARRIAG 466
L Y EQL LLG+VL G+D+ E L+ED DDI +R G
Sbjct: 703 LKYTSKQEQLELLGQVLGEGEDSGKNETLEEDFDDITRGGTAKKQKPGTNPTAVSRTTGG 762
Query: 467 SMSAMSGAQGMVYMEYR 483
SM A+SGA + YMEY+
Sbjct: 763 SMKALSGANDVNYMEYQ 779
>gi|424513709|emb|CCO66331.1| predicted protein [Bathycoccus prasinos]
Length = 962
Score = 652 bits (1681), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 320/502 (63%), Positives = 378/502 (75%), Gaps = 27/502 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDF ND VNP+LN+ LKP + RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G+
Sbjct: 415 LEEYDFTNDTVNPNLNVRLKPMTKIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLTGI 474
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN--AGVVVT 119
+AA R+ KSCLCL T++VSVDQWA QFKLW+ + D +I RFTS +KE F N V VT
Sbjct: 475 AAAVRVGKSCLCLCTSSVSVDQWAGQFKLWTNLTDREIVRFTSQNKETFPPNNCPCVCVT 534
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TYNM++ GGKRSE SEKI+ IR REWG +L+DEVHVVPA MFRKVI +TK+HCKLGLTA
Sbjct: 535 TYNMISAGGKRSEASEKILNAIRGREWGTMLLDEVHVVPAAMFRKVIGITKAHCKLGLTA 594
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVRED+++ LNFLIGPKLYEANWLDL + G IANVQC EVWC MT EFF++YL + S
Sbjct: 595 TLVREDDKVEHLNFLIGPKLYEANWLDLQRDGHIANVQCVEVWCEMTPEFFAKYLDPKFS 654
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
KKQ LY MNPNKF AC++L+ +HE R DK+IVF+DN+FAL EYA L++P+IYG TSH
Sbjct: 655 MKKQVLYCMNPNKFMACQYLMTYHENFRKDKVIVFSDNIFALREYATALKRPLIYGDTSH 714
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT++L AFK S ++NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR
Sbjct: 715 AERTRVLHAFKYSNEINTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRP 774
Query: 360 K----GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
K GK D +++NAFFYSLVS DT EM++STKRQQFLI QGY+FK++ L
Sbjct: 775 KAATVGKKND-----SDDHNAFFYSLVSRDTSEMYFSTKRQQFLIQQGYAFKIVPDLIGE 829
Query: 416 DSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------------ALH 459
+ L Y QL LL K L+AG+ G E LD D DD+ A
Sbjct: 830 NDKVQLMYSTKATQLDLLAKTLNAGEAEAGEEVLDVDEDDLEGNLMKQKKAKLSALAAAR 889
Query: 460 KARRIAGSMSAMSGAQGMVYME 481
+ R + GS++ +SGAQG+ Y E
Sbjct: 890 RTRTVGGSLAKLSGAQGLTYQE 911
>gi|281201244|gb|EFA75456.1| transcription factor IIH subunit [Polysphondylium pallidum PN500]
Length = 690
Score = 646 bits (1667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/492 (64%), Positives = 376/492 (76%), Gaps = 18/492 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NP+L ++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 194 MLEEYDFRNDTINPNLAIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 253
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW +QFKLWS I++ I +FTSDSKE+ AGV +TT
Sbjct: 254 ITAACTVKKSILVLCTSAVSVEQWKYQFKLWSNIEEKMISKFTSDSKEKMYTLAGVTITT 313
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AFGGKRS ES KI+ ++ REWGL+L+DEVHVVPA MFR+V+++T++HCKLGLTAT
Sbjct: 314 YTMIAFGGKRSAESLKIMNDLTKREWGLVLLDEVHVVPAAMFRRVLTVTRAHCKLGLTAT 373
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DLNFLIGPKLYEANWLDL K GF+ANV C+EVWCPMT EF+ EYL E+
Sbjct: 374 LLREDEKIQDLNFLIGPKLYEANWLDLQKSGFLANVSCSEVWCPMTAEFYHEYLTNESQG 433
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNKFR CE+LI +HE QRGDKIIVF+DN++AL YA +L++ IYGATS
Sbjct: 434 KKKLLYTMNPNKFRVCEYLINYHE-QRGDKIIVFSDNVYALKMYATQLKRFYIYGATSGQ 492
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ + TIF+SKVGD SIDIPEA VIIQ+SSH GSRRQE QRLGRILR K
Sbjct: 493 ERMSILSKFQHDPSVRTIFISKVGDTSIDIPEATVIIQVSSHYGSRRQETQRLGRILRPK 552
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
K + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVI+ P D
Sbjct: 553 PKSDGL-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISEFPGLDE-EQ 604
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR--------RIAGSMSAMS 472
L + + QL LL +VL GDD+ +E LDED DDI + K + R G++ A+S
Sbjct: 605 LQFSTKESQLKLLQEVLREGDDSGKIEMLDEDFDDITVSKKKQKPNTTITRTTGNIRALS 664
Query: 473 GAQG-MVYMEYR 483
G G YMEY+
Sbjct: 665 GGAGDTTYMEYK 676
>gi|328865979|gb|EGG14365.1| transcription factor IIH subunit [Dictyostelium fasciculatum]
Length = 810
Score = 640 bits (1651), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/492 (64%), Positives = 374/492 (76%), Gaps = 18/492 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNP+L ++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL G
Sbjct: 303 MLEEYDFRNDTVNPNLPIDLKPTTMIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLSG 362
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS L L T+AVSV+QW FQF+LWS I++ I +FTSD+KE+ AGV +TT
Sbjct: 363 ITAACTVKKSILVLCTSAVSVEQWKFQFRLWSNIEEKMISKFTSDNKEKMYSMAGVTITT 422
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AFGGKRS ES KI+ E+ REWGL+L+DEVHVVPA MFRKV+++TK+HCKLGLTAT
Sbjct: 423 YTMIAFGGKRSPESLKIMNELTTREWGLVLLDEVHVVPAAMFRKVLTVTKAHCKLGLTAT 482
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+REDE+I DL+FLIGPKLYEANWLDL K GF+ANV C+E+WC MT EF+ EYL ++
Sbjct: 483 LLREDEKIQDLSFLIGPKLYEANWLDLQKAGFLANVSCSEIWCEMTAEFYREYLTNDSQG 542
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ LY MNPNK RACE+LIR+HE QRGDKIIVF+DN++AL +YA++ ++ IYG TS
Sbjct: 543 KKKLLYTMNPNKCRACEYLIRYHE-QRGDKIIVFSDNVYALKKYAIEFKRYFIYGETSGQ 601
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL+ F+ + TIF+SKVGD SIDIPEA VIIQISSH GSRRQEAQRLGRILR K
Sbjct: 602 ERLSILRKFQFDPSVRTIFISKVGDTSIDIPEATVIIQISSHYGSRRQEAQRLGRILRPK 661
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
K + YNAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVI+ LP D D
Sbjct: 662 PKSDGN-------YNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVISELPGLDLETD 714
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI---------ALHKARRIAGSMSAM 471
L + + QL LL +VL GDD+ E LDED DDI R GSM +
Sbjct: 715 LHFSSKEAQLGLLNEVLKEGDDSGRAETLDEDFDDITTGKIKKKKKTTTVTRTTGSMKTL 774
Query: 472 S-GAQGMVYMEY 482
S G+ YME+
Sbjct: 775 SGGSTNTSYMEF 786
>gi|115439313|ref|NP_001043936.1| Os01g0691600 [Oryza sativa Japonica Group]
gi|113533467|dbj|BAF05850.1| Os01g0691600 [Oryza sativa Japonica Group]
Length = 580
Score = 638 bits (1646), Expect = e-180, Method: Compositional matrix adjust.
Identities = 299/323 (92%), Positives = 310/323 (95%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNPDL MELKP A+PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG
Sbjct: 257 MLEEYDFRNDTVNPDLEMELKPQARPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI+D+ I RFTSD+KE+FRG AGVVVTT
Sbjct: 317 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIKDEHISRFTSDNKEKFRGMAGVVVTT 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVAFGGKRSE+SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS+TKSHCKLGLTAT
Sbjct: 377 YNMVAFGGKRSEDSEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISITKSHCKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF+EYLKKENSK
Sbjct: 437 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFAEYLKKENSK 496
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KKQ LY MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT YAMKLRKPMIYG+TSHV
Sbjct: 497 KKQVLYAMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTSYAMKLRKPMIYGSTSHV 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKV 323
ERT+IL FK S D+NTIFLSKV
Sbjct: 557 ERTRILHQFKNSSDVNTIFLSKV 579
>gi|302836588|ref|XP_002949854.1| hypothetical protein VOLCADRAFT_90307 [Volvox carteri f. nagariensis]
gi|300264763|gb|EFJ48957.1| hypothetical protein VOLCADRAFT_90307 [Volvox carteri f. nagariensis]
Length = 1119
Score = 637 bits (1644), Expect = e-180, Method: Compositional matrix adjust.
Identities = 324/490 (66%), Positives = 373/490 (76%), Gaps = 43/490 (8%)
Query: 1 MLEEYDFRNDNVNPDL-NMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 59
MLEEYDFRND NPDL ELKPH + RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV
Sbjct: 626 MLEEYDFRNDRRNPDLLPFELKPHVKLRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 685
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119
GV+AA R+KKSCLCL T++VSVDQW +QF+LW++I D QI RFTS++KE F G GV+VT
Sbjct: 686 GVAAASRVKKSCLCLCTSSVSVDQWKYQFQLWTSIGDHQIARFTSENKEMFPGEVGVLVT 745
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
T+ M+AF GKRSEESE+I+ IR+REWGLLLMDEVHVVPA MFR VIS KSHCKLGLTA
Sbjct: 746 TFTMIAFSGKRSEESERIMNCIRSREWGLLLMDEVHVVPAQMFRTVISTCKSHCKLGLTA 805
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVREDERI DLNFLIGPKLYEANWLDL + G IANVQCAEVWCPMT EF+ EYLKKEN
Sbjct: 806 TLVREDERIADLNFLIGPKLYEANWLDLTRAGHIANVQCAEVWCPMTGEFYREYLKKENG 865
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
++Q LY MNPN KIIVF+DN++AL EYA ++RKP IYG TSH
Sbjct: 866 PRRQLLYCMNPN------------------KIIVFSDNIWALREYATRMRKPFIYGPTSH 907
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT++L AFK + D+NT+FLSKVGDNS+DIPEANV+IQISSHAGSRRQEAQRLGRILRA
Sbjct: 908 AERTRVLHAFKHNPDINTVFLSKVGDNSLDIPEANVLIQISSHAGSRRQEAQRLGRILRA 967
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG- 418
K M GG D +EM+YSTKRQQFLIDQGYSFKV+T+L +G
Sbjct: 968 K----KGMGGG-------------PDGEEMYYSTKRQQFLIDQGYSFKVVTNLLDAAAGS 1010
Query: 419 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQL-DEDADDI-----ALHKARRIAGSMSAMS 472
A L Y QL LL +VLSAG + G+E L DEDA+ + ARR G M+A++
Sbjct: 1011 AGLMYSDKSSQLDLLSRVLSAGMEEAGVETLRDEDAEGLAAAAGQRPAARRRVGDMAALT 1070
Query: 473 GAQGMVYMEY 482
GA G+ Y+E+
Sbjct: 1071 GASGIRYLEF 1080
>gi|255071253|ref|XP_002507708.1| predicted protein [Micromonas sp. RCC299]
gi|226522983|gb|ACO68966.1| predicted protein [Micromonas sp. RCC299]
Length = 809
Score = 634 bits (1636), Expect = e-179, Method: Compositional matrix adjust.
Identities = 314/494 (63%), Positives = 382/494 (77%), Gaps = 16/494 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND NPDL++ LKP R YQEKSLS MFGNGRARSGIIVLPCGAGKSL G+
Sbjct: 307 LEEYDFRNDTHNPDLDIALKPMTHIRSYQEKSLSTMFGNGRARSGIIVLPCGAGKSLTGI 366
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVVT 119
+AA RI+KSC+CL T++VSVDQWA QFKLW+ + + +I RFTS KE F + A V +T
Sbjct: 367 AAASRIRKSCICLCTSSVSVDQWAAQFKLWTNLSELEIVRFTSQVKESFPPQNQACVCIT 426
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TYNMV+ GGKRSE+S++ + E+R REWGL+L+DEVHVVPA MFRKVI +TK+HCKLGLTA
Sbjct: 427 TYNMVSVGGKRSEDSQRALAELRGREWGLMLLDEVHVVPAAMFRKVIGITKAHCKLGLTA 486
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVREDE++ LNFLIGPKLYEANWLDL + G IANVQC EVWCPMT EF+ +YL + +
Sbjct: 487 TLVREDEKVEHLNFLIGPKLYEANWLDLQRDGHIANVQCVEVWCPMTAEFYKKYLSNDLA 546
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
K+Q LY MNPNKF C++L++FHE+QR DKII+F+DN+FAL EYA LR+P+IYG TSH
Sbjct: 547 AKRQILYCMNPNKFMTCQYLMQFHEKQRKDKIIIFSDNIFALREYATVLRRPLIYGETSH 606
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT++L AFK S ++NTIFLSKVGDNSIDIPEANVIIQISSH GSRRQEAQRLGRILR
Sbjct: 607 AERTRVLHAFKFSDEVNTIFLSKVGDNSIDIPEANVIIQISSHGGSRRQEAQRLGRILRP 666
Query: 360 K------GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
K LE A G E+NAFFYSLVSTDT+EM++STKRQQFL+ QGY+FKV+ ++
Sbjct: 667 KRIAAQASILEG--AAGVGEHNAFFYSLVSTDTEEMYFSTKRQQFLVQQGYAFKVVANIF 724
Query: 414 PPDSGADLSYHRLDEQLALLGKVL-----SAGDDAVGLEQLDEDADDIALHKARRIAGSM 468
L +H ++Q+ALL +VL +A D+A+ + D DI +R S+
Sbjct: 725 DESVEHQLLFHTREDQMALLERVLRLDEVAAVDEALVEDDDDITRIDIVSDTVKRREESI 784
Query: 469 SAMSGAQGMVYMEY 482
A+SGAQG Y+EY
Sbjct: 785 LALSGAQG-TYLEY 797
>gi|403280221|ref|XP_003931626.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 2 [Saimiri boliviensis boliviensis]
gi|403280223|ref|XP_003931627.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 3 [Saimiri boliviensis boliviensis]
Length = 718
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 380/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IANVQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIANVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFY+LVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 KGM------VAEEYNAFFYTLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 637 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 689
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 690 DDTVYMEY 697
>gi|348516497|ref|XP_003445775.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 1 [Oreochromis niloticus]
Length = 783
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 377/488 (77%), Gaps = 22/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDTVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +R++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGM------VAEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI-----AGSMSAMSGAQ 475
L + DEQ LL KVL+A D +D + + +A R G+MS+MSGA
Sbjct: 701 LMFSSRDEQQQLLQKVLAASD-------MDAEEEVVAGEVGTRPQFSRRTGTMSSMSGAD 753
Query: 476 GMVYMEYR 483
+YMEY+
Sbjct: 754 DTIYMEYQ 761
>gi|348516499|ref|XP_003445776.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 2 [Oreochromis niloticus]
Length = 784
Score = 622 bits (1605), Expect = e-175, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 377/488 (77%), Gaps = 22/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDTVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 352 VTAACTVRKRCLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +R++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 648
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 649 KGM------VAEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 701
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI-----AGSMSAMSGAQ 475
L + DEQ LL KVL+A D +D + + +A R G+MS+MSGA
Sbjct: 702 LMFSSRDEQQQLLQKVLAASD-------MDAEEEVVAGEVGTRPQFSRRTGTMSSMSGAD 754
Query: 476 GMVYMEYR 483
+YMEY+
Sbjct: 755 DTIYMEYQ 762
>gi|403280219|ref|XP_003931625.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like isoform 1 [Saimiri boliviensis boliviensis]
Length = 782
Score = 622 bits (1604), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 380/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IANVQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIANVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFY+LVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYTLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|397516179|ref|XP_003828313.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 2 [Pan paniscus]
gi|397516181|ref|XP_003828314.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 3 [Pan paniscus]
Length = 718
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 637 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 689
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 690 DDTVYMEY 697
>gi|402892201|ref|XP_003909308.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 2 [Papio anubis]
Length = 718
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 637 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 689
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 690 DDTVYMEY 697
>gi|397516177|ref|XP_003828312.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 1 [Pan paniscus]
gi|410208020|gb|JAA01229.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
gi|410306508|gb|JAA31854.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
gi|410342887|gb|JAA40390.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Pan troglodytes]
Length = 782
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|197101765|ref|NP_001125797.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pongo abelii]
gi|75070714|sp|Q5RA62.1|ERCC3_PONAB RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|55729225|emb|CAH91348.1| hypothetical protein [Pongo abelii]
Length = 782
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|67967581|dbj|BAE00273.1| unnamed protein product [Macaca fascicularis]
Length = 782
Score = 621 bits (1602), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|119615718|gb|EAW95312.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_b [Homo sapiens]
gi|119615720|gb|EAW95314.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_b [Homo sapiens]
Length = 718
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 637 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 689
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 690 DDTVYMEY 697
>gi|47205016|emb|CAF93977.1| unnamed protein product [Tetraodon nigroviridis]
Length = 841
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 378/488 (77%), Gaps = 22/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 349 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 408
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 409 VTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 467
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +R++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 468 YSMLGHTTKRSWEAERVMEWMRSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 527
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKL+EANW++L G+IA VQCAEVWCPMT EF+ EY+ + +K
Sbjct: 528 LVREDDKIVDLNFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMTPEFYREYVAIK-TK 586
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 587 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 645
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 646 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 705
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 706 KGMV------AEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 758
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-----KARRIAGSMSAMSGAQ 475
L DEQ LL KVL+A D LD + + +A + R G+MS+MSGA
Sbjct: 759 LMLSSRDEQQQLLQKVLAASD-------LDAEEEVVAGEVGARPQFSRRTGTMSSMSGAD 811
Query: 476 GMVYMEYR 483
VYMEY+
Sbjct: 812 DTVYMEYQ 819
>gi|355566063|gb|EHH22492.1| hypothetical protein EGK_05771 [Macaca mulatta]
gi|355751659|gb|EHH55914.1| hypothetical protein EGM_05215 [Macaca fascicularis]
Length = 784
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 293 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 353 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 411
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 412 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 471
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 472 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 530
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 531 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 589
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 590 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 649
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 650 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 702
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 703 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 755
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 756 DDTVYMEY 763
>gi|388454156|ref|NP_001253337.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|402892199|ref|XP_003909307.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit isoform 1 [Papio anubis]
gi|62510678|sp|Q60HG1.1|ERCC3_MACFA RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|52782215|dbj|BAD51954.1| xeroderma pigmentosum group B complementing factor [Macaca
fascicularis]
gi|380810472|gb|AFE77111.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|383412921|gb|AFH29674.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
gi|384945792|gb|AFI36501.1| TFIIH basal transcription factor complex helicase XPB subunit
[Macaca mulatta]
Length = 782
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|426220683|ref|XP_004004543.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Ovis aries]
Length = 782
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|296204328|ref|XP_002749284.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Callithrix jacchus]
Length = 782
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|126325929|ref|XP_001366494.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Monodelphis domestica]
Length = 783
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/503 (60%), Positives = 384/503 (76%), Gaps = 11/503 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR GSMS+MSGA VYM
Sbjct: 701 LAFSSKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSTQVSRRF-GSMSSMSGADDTVYM 759
Query: 481 EYRYDPWQKQLFKASSQIFFSFQ 503
EY + + K +F F+
Sbjct: 760 EYHTSRSKASVNKHVHPLFKRFR 782
>gi|114050909|ref|NP_001039453.1| TFIIH basal transcription factor complex helicase XPB subunit [Bos
taurus]
gi|122134582|sp|Q1RMT1.1|ERCC3_BOVIN RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|92097496|gb|AAI14730.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Bos taurus]
gi|296490749|tpg|DAA32862.1| TPA: TFIIH basal transcription factor complex helicase XPB subunit
[Bos taurus]
Length = 782
Score = 621 bits (1601), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|395519351|ref|XP_003763813.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Sarcophilus harrisii]
Length = 783
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR GSMS+MSGA VYM
Sbjct: 701 LAFSSKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSTQVSRRF-GSMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|4557563|ref|NP_000113.1| TFIIH basal transcription factor complex helicase XPB subunit [Homo
sapiens]
gi|119541|sp|P19447.1|ERCC3_HUMAN RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=Basic transcription factor 2 89
kDa subunit; Short=BTF2 p89; AltName: Full=DNA excision
repair protein ERCC-3; AltName: Full=DNA repair protein
complementing XP-B cells; AltName: Full=TFIIH basal
transcription factor complex 89 kDa subunit; Short=TFIIH
89 kDa subunit; Short=TFIIH p89; AltName: Full=Xeroderma
pigmentosum group B-complementing protein
gi|182179|gb|AAA52396.1| DNA repair helicase [Homo sapiens]
gi|14250706|gb|AAH08820.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
gi|24286758|gb|AAN46739.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [Homo sapiens]
gi|60656181|gb|AAX32654.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [synthetic construct]
gi|62822521|gb|AAY15069.1| unknown [Homo sapiens]
gi|119615719|gb|EAW95313.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_c [Homo sapiens]
gi|123994253|gb|ABM84728.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [synthetic construct]
gi|157928689|gb|ABW03630.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing) [synthetic construct]
gi|168277380|dbj|BAG10668.1| TFIIH basal transcription factor complex helicase XPB subunit
[synthetic construct]
Length = 782
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|42415513|ref|NP_963876.1| TFIIH basal transcription factor complex helicase XPB subunit
[Danio rerio]
gi|82241436|sp|Q7ZVV1.1|ERCC3_DANRE RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|28277642|gb|AAH45400.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Danio rerio]
gi|182892000|gb|AAI65665.1| Ercc3 protein [Danio rerio]
Length = 782
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/488 (62%), Positives = 378/488 (77%), Gaps = 22/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+NM+LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDTVNPDINMDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 350 VTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWMKSQEWGLIILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 528 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 647 KGMV------AEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 699
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-----ALHKARRIAGSMSAMSGAQ 475
L + DEQ LL KVL+A D LD + + + + R AG+MS+MSGA
Sbjct: 700 LMFSTRDEQQQLLQKVLAASD-------LDAEEEVVMGEVGGKPQFSRRAGTMSSMSGAD 752
Query: 476 GMVYMEYR 483
+YMEY+
Sbjct: 753 DALYMEYQ 760
>gi|193787880|dbj|BAG53083.1| unnamed protein product [Homo sapiens]
Length = 718
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 637 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 689
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 690 DDTVYMEY 697
>gi|417404577|gb|JAA49035.1| Putative rna polymer [Desmodus rotundus]
Length = 782
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/482 (62%), Positives = 378/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +R +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLRTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + ++ + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGESGFRSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|410912458|ref|XP_003969706.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Takifugu rubripes]
Length = 781
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/488 (62%), Positives = 377/488 (77%), Gaps = 22/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 289 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 349 VTAACTVRKRCLVLGNSSVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 407
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +R++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 408 YSMLGHTTKRSWEAERVMEWMRSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 467
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKL+EANW++L G+IA VQCAEVWCPMT EF+ EY+ + +K
Sbjct: 468 LVREDDKIVDLNFLIGPKLFEANWMELQNNGYIAKVQCAEVWCPMTPEFYREYVAIK-TK 526
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 527 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAIRLNKPFIYGPTSQG 585
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 586 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 645
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 646 KGM------VAEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 698
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-----KARRIAGSMSAMSGAQ 475
L DE LL KVL+A D LD + + +A + R G+MS+MSGA
Sbjct: 699 LMLSSRDEHQQLLQKVLAASD-------LDAEEEVVAGEVGARPQFSRRTGTMSSMSGAD 751
Query: 476 GMVYMEYR 483
VYMEY+
Sbjct: 752 DTVYMEYQ 759
>gi|60653125|gb|AAX29257.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [synthetic construct]
Length = 783
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K+ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDEPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|291391360|ref|XP_002712461.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 3 [Oryctolagus
cuniculus]
Length = 782
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELENNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQASRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|193787168|dbj|BAG52374.1| unnamed protein product [Homo sapiens]
Length = 718
Score = 620 bits (1598), Expect = e-175, Method: Compositional matrix adjust.
Identities = 304/488 (62%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 227 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 286
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 287 VTAVCTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 345
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 346 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 405
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 406 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 464
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 465 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 523
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 524 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 583
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 584 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 636
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 637 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 689
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 690 DDTVYMEY 697
>gi|158254380|dbj|BAF83163.1| unnamed protein product [Homo sapiens]
Length = 782
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 305/488 (62%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YPMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|395855908|ref|XP_003800388.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Otolemur garnettii]
Length = 782
Score = 619 bits (1597), Expect = e-175, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSLSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|301783213|ref|XP_002927021.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Ailuropoda melanoleuca]
Length = 778
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 287 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 346
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 347 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 405
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 406 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 465
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 466 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 524
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 525 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 583
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 584 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 643
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 644 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMED-EE 696
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 697 LAFSTREEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 749
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 750 DDTVYMEY 757
>gi|74185870|dbj|BAE32801.1| unnamed protein product [Mus musculus]
Length = 783
Score = 619 bits (1596), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 352 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 648
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 649 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 701
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
LS+ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 702 LSFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRCGTMSSLSGA 754
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 755 DDTVYMEY 762
>gi|348586086|ref|XP_003478801.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Cavia porcellus]
Length = 781
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 350 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 528 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 647 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 699
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 700 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 752
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 753 DDTVYMEY 760
>gi|120538319|gb|AAI29781.1| LOC100036984 protein [Xenopus laevis]
Length = 772
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/483 (62%), Positives = 379/483 (78%), Gaps = 12/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 279 LLAEYDFRNDTMNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 338
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 339 VTAACTVRKRCLVLGNSAVSVEQWKSQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 397
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 398 YSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 457
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 458 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 516
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 517 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLCKPYIYGPTSQG 575
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 576 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 635
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 636 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 688
Query: 421 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVY 479
L++ ++Q LL KVL+A D DA E ++ +RRI G+MS+MSGA VY
Sbjct: 689 LAFSTKEDQHQLLQKVLAASDLDAEEEIVAGEFGSRSSMQVSRRI-GTMSSMSGADDAVY 747
Query: 480 MEY 482
MEY
Sbjct: 748 MEY 750
>gi|350538541|ref|NP_001233723.1| TFIIH basal transcription factor complex helicase XPB subunit
[Cricetulus griseus]
gi|117572517|gb|ABK40495.1| DNA helicase [Cricetulus griseus]
Length = 782
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/488 (61%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|73984146|ref|XP_533314.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Canis lupus familiaris]
Length = 782
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMED-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|335302531|ref|XP_003133336.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Sus scrofa]
Length = 782
Score = 618 bits (1594), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|410968486|ref|XP_003990735.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Felis catus]
Length = 782
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMED-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTREEQQQLLQKVLAATDLDAEEEVVAGEFGSRSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|432851969|ref|XP_004067131.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Oryzias latipes]
Length = 783
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 377/488 (77%), Gaps = 22/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+ ++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDTVNPDIAIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L ++VSV+QW QFK+WSTI + ICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSSVSVEQWKAQFKMWSTIDESLICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +R++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWMRSQEWGLIILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLIRFHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIRFHE-RRNDKIIVFADNVFALKEYAVRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNA+FYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L D D
Sbjct: 648 KGMV------AEEYNAYFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMDE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-----KARRIAGSMSAMSGAQ 475
L + +EQ LL KVL+A D LD + + +A + R AG+MS+MSGA
Sbjct: 701 LMFSTREEQQQLLQKVLAASD-------LDAEDEIVATELGVRPQVSRRAGTMSSMSGAD 753
Query: 476 GMVYMEYR 483
VYMEY+
Sbjct: 754 DTVYMEYQ 761
>gi|344290062|ref|XP_003416758.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Loxodonta africana]
Length = 782
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/482 (62%), Positives = 376/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC + K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVHKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 701 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 759
Query: 481 EY 482
EY
Sbjct: 760 EY 761
>gi|351703141|gb|EHB06060.1| TFIIH basal transcription factor complex helicase XPB subunit
[Heterocephalus glaber]
Length = 751
Score = 618 bits (1593), Expect = e-174, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 260 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 319
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 320 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 378
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 379 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 438
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 439 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 497
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 498 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 556
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 557 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 616
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 617 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 669
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 670 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 722
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 723 DDTVYMEY 730
>gi|19526800|ref|NP_598419.1| TFIIH basal transcription factor complex helicase XPB subunit [Mus
musculus]
gi|1351441|sp|P49135.1|ERCC3_MOUSE RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=Basic transcription factor 2 89
kDa subunit; Short=BTF2 p89; AltName: Full=DNA excision
repair protein ERCC-3; AltName: Full=DNA repair protein
complementing XP-B cells; AltName: Full=TFIIH 89 kDa
subunit; AltName: Full=Xeroderma pigmentosum group
B-complementing protein
gi|240583|gb|AAB20614.1| DNA repair gene [Mus sp.]
gi|16741581|gb|AAH16595.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mus musculus]
gi|20072984|gb|AAH26575.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mus musculus]
gi|148664642|gb|EDK97058.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, isoform CRA_b [Mus musculus]
Length = 783
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/488 (61%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 352 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 648
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 649 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 701
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 702 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRCGTMSSLSGA 754
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 755 DDTVYMEY 762
>gi|119615717|gb|EAW95311.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 (xeroderma pigmentosum group B
complementing), isoform CRA_a [Homo sapiens]
Length = 796
Score = 617 bits (1592), Expect = e-174, Method: Compositional matrix adjust.
Identities = 304/488 (62%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 305 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 364
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 365 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 423
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 424 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 483
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 484 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 542
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 543 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 601
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 602 ERMQILQNFKHNPKINTIFISKVCDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 661
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 662 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 714
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 715 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 767
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 768 DDTVYMEY 775
>gi|74227659|dbj|BAE35681.1| unnamed protein product [Mus musculus]
Length = 505
Score = 617 bits (1591), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/488 (61%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 14 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 73
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 74 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 132
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 133 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 192
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 193 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 251
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 252 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 310
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 311 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 370
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 371 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 423
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 424 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRCGTMSSLSGA 476
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 477 DDTVYMEY 484
>gi|194332647|ref|NP_001123812.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Xenopus (Silurana) tropicalis]
gi|189441808|gb|AAI67617.1| LOC100170563 protein [Xenopus (Silurana) tropicalis]
Length = 786
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/483 (62%), Positives = 377/483 (78%), Gaps = 12/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 293 LLAEYDFRNDTMNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 353 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 411
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 412 YSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 471
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 472 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 530
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 531 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLSKPYIYGPTSQG 589
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 590 ERMHILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 649
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L +
Sbjct: 650 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EH 702
Query: 421 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVY 479
L++ ++Q LL KVL+A D DA + E + +RR+ G+MS+MSGA VY
Sbjct: 703 LAFSNKEDQQQLLQKVLAASDLDAEEEVVVGEFGSRSTMQVSRRV-GTMSSMSGADDAVY 761
Query: 480 MEY 482
MEY
Sbjct: 762 MEY 764
>gi|72255519|ref|NP_001026814.1| TFIIH basal transcription factor complex helicase XPB subunit
[Rattus norvegicus]
gi|123781857|sp|Q4G005.1|ERCC3_RAT RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|71051759|gb|AAH98856.1| Excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Rattus norvegicus]
gi|149017136|gb|EDL76187.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Rattus norvegicus]
Length = 782
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 301/488 (61%), Positives = 379/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRFGTMSSLSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|148664641|gb|EDK97057.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, isoform CRA_a [Mus musculus]
Length = 593
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 302/488 (61%), Positives = 378/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 102 LLAEYDFRNDTLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 161
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 162 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 220
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 221 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPARMFRRVLTIVQAHCKLGLTAT 280
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 281 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 339
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 340 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 398
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 399 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 458
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 459 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 511
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS++SGA
Sbjct: 512 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRCGTMSSLSGA 564
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 565 DDTVYMEY 572
>gi|443897666|dbj|GAC75006.1| RNA pRNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, 3'-5' helicase subunit
SSL2olymerase II transcription initiation [Pseudozyma
antarctica T-34]
Length = 925
Score = 616 bits (1589), Expect = e-174, Method: Compositional matrix adjust.
Identities = 309/499 (61%), Positives = 373/499 (74%), Gaps = 27/499 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +N DL ++LKP RPYQEKSL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 403 MLEEYDFRNDQLNADLEIDLKPITHIRPYQEKSLAKMFGNGRARSGIIVLPCGAGKTLVG 462
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS IQD+QI FT+D KE+F G +G+VV+T
Sbjct: 463 ITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGASGIVVST 522
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA GKRS S+K++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 523 YSMVANTGKRSHTSQKMMNFLESREWGFILLDEVHVVPASMFRRVLTKIKAHSKLGLTAT 582
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I +LNFL+GPKLYEANW+DL G IA VQCAEVWCPMT EF+ EYL +E S+
Sbjct: 583 LVREDEKIDELNFLVGPKLYEANWMDLAAKGHIATVQCAEVWCPMTPEFYREYL-REKSR 641
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNP KF+AC+FLI +HE RGDKIIVF+DN+FAL YAMKL+KP I+G T+HV
Sbjct: 642 KKMLLYCMNPKKFQACQFLIDYHE-NRGDKIIVFSDNVFALEAYAMKLKKPFIHGGTAHV 700
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 701 ERMRILQNFQHNPIVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 760
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYSTKRQQFLIDQGY+F+VIT L + +
Sbjct: 761 RR-------NDEGFNAFFYSLVSKDTAEMFYSTKRQQFLIDQGYAFRVITHLVGMEDMPE 813
Query: 421 LSYHRLDEQLALLGKVLSA-------GDDAVGLE-----------QLDEDADDIALHKAR 462
L Y + +Q+ LL VL A G D G E + + A+ KA
Sbjct: 814 LVYKKQSDQIELLQSVLIANEADADLGSDMHGTEFGGGGGGARRVGGVGASANAAMPKAA 873
Query: 463 RIAGSMSAMSGAQGMVYME 481
R GS++A+SGAQ M Y+E
Sbjct: 874 RTTGSLNALSGAQHMSYIE 892
>gi|344233375|gb|EGV65247.1| DNA repair helicase rad25 [Candida tenuis ATCC 10573]
Length = 829
Score = 615 bits (1587), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/491 (61%), Positives = 376/491 (76%), Gaps = 19/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 323 VLEEYDFRNDQRNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 382
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF WSTIQ + + FTS++KE F +AG+VV+T
Sbjct: 383 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWSTIQPESVAAFTSENKEMFSTDAGLVVST 442
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 443 YSMVANTRARSYDSQKVMDFLTSREWGFIILDEVHVVPAVMFRRVVTTIAAHSKLGLTAT 502
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 503 LVREDDKIYDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RETSR 561
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYGATS
Sbjct: 562 KKMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGATSQQ 620
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 621 ERMKILQNFQHNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 680
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + +
Sbjct: 681 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLNGMEQLPN 733
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---------RIAGSMSAM 471
L+Y E+ LL +VL +DA GLE + +DAD + R + AGS++ +
Sbjct: 734 LAYSTARERRELLQEVLLKNEDAAGLE-IGDDADTTFAREGRIKTEGSSSVKSAGSLAGL 792
Query: 472 SGAQGMVYMEY 482
+G + M Y+EY
Sbjct: 793 AGGEDMAYLEY 803
>gi|336370746|gb|EGN99086.1| hypothetical protein SERLA73DRAFT_168625 [Serpula lacrymans var.
lacrymans S7.3]
Length = 858
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/494 (61%), Positives = 369/494 (74%), Gaps = 22/494 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +N +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 333 MLEEYDFRNDTINANLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS + D QI FT++SKERF G +G+VV+T
Sbjct: 393 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTAESKERFAGESGIVVST 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 453 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 513 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI+FHE RGDKIIVF+DN+FAL YA KL KP I+G T V
Sbjct: 572 KRMLLYCMNPKKFQACQFLIKFHE-DRGDKIIVFSDNVFALEAYAKKLGKPYIHGGTGQV 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERMRVLQWFQHDSNVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L ++ D
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLENLPD 743
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQ-------------LDEDADDIALHKARRIAGS 467
L Y DEQ+ L+ VL A + L +D + A+R G+
Sbjct: 744 LVYRTKDEQIELISSVLLANESEADLGSDIRATEGDLAGTVTSKDFGQMKFPGAQRTTGT 803
Query: 468 MSAMSGAQGMVYME 481
++A+SGAQ M Y+E
Sbjct: 804 LTALSGAQHMSYVE 817
>gi|194222122|ref|XP_001488557.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Equus caballus]
Length = 983
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 301/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 492 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 551
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 552 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 610
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 611 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 670
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 671 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 729
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 730 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 788
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 789 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 848
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 849 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 901
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 902 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 960
Query: 481 EY 482
EY
Sbjct: 961 EY 962
>gi|198426377|ref|XP_002119177.1| PREDICTED: hypothetical protein [Ciona intestinalis]
Length = 794
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/486 (62%), Positives = 373/486 (76%), Gaps = 14/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N DL ++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 304 LLAEYDFRNDTINKDLKIDLKPTTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 363
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K C+ L T+ V+V+QW QFK+WST D ICRFTSD+K+R G + ++T
Sbjct: 364 VTAACTVRKRCMVLCTSGVAVEQWRSQFKMWSTADDSMICRFTSDAKDRPHG-CSIAIST 422
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS ESEK++E IR++EWGL+++DEVH +PA FR+V+++ +SHCKLGLTAT
Sbjct: 423 YSMMGHSMKRSYESEKVMEWIRSQEWGLIVLDEVHTIPAKQFRRVLTVVQSHCKLGLTAT 482
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L GGFIA VQCAEVWCPMT EF+ EYL S+
Sbjct: 483 LVREDDKISDLNFLIGPKLYEANWMELQNGGFIARVQCAEVWCPMTPEFYREYLSI-RSR 541
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LYVMNPNKFRAC+FL+RFHE +R DKI+VF+DN+FAL EYA+++ KP IYG T+
Sbjct: 542 KRLLLYVMNPNKFRACQFLVRFHE-RRNDKIVVFSDNVFALKEYAVRMGKPYIYGPTTQG 600
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA- 359
ER +ILQ F + +NTIF+SKVGDNSID+P ANV+IQ+SSH GSRRQEAQRLGRILRA
Sbjct: 601 ERLQILQNFIHNPKVNTIFISKVGDNSIDLPAANVLIQVSSHGGSRRQEAQRLGRILRAK 660
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
KG L EEYNAFFYSLVS DT E+ YSTKRQ+FL+DQGYSFK IT L D
Sbjct: 661 KGSL-------AEEYNAFFYSLVSQDTVEVAYSTKRQRFLVDQGYSFKAITHLTGIDEEE 713
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKARRIAGSMSAMSGAQGM 477
L++ DEQ ALL KVL+A D E + + D RR AG+MS+MSGA
Sbjct: 714 QLAFTTKDEQHALLQKVLAASDLDAEEEMVPGEFGVGDKGKGGFRR-AGAMSSMSGADDS 772
Query: 478 VYMEYR 483
VYMEYR
Sbjct: 773 VYMEYR 778
>gi|194294489|ref|NP_001123567.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Ciona intestinalis]
gi|1764011|emb|CAB06045.1| COS41.1 [Ciona intestinalis]
Length = 793
Score = 614 bits (1584), Expect = e-173, Method: Compositional matrix adjust.
Identities = 304/486 (62%), Positives = 373/486 (76%), Gaps = 14/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N DL ++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 303 LLAEYDFRNDTINKDLKIDLKPTTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 362
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K C+ L T+ V+V+QW QFK+WST D ICRFTSD+K+R G + ++T
Sbjct: 363 VTAACTVRKRCMVLCTSGVAVEQWRSQFKMWSTADDSMICRFTSDAKDRPHG-CSIAIST 421
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS ESEK++E IR++EWGL+++DEVH +PA FR+V+++ +SHCKLGLTAT
Sbjct: 422 YSMMGHSMKRSYESEKVMEWIRSQEWGLIVLDEVHTIPAKQFRRVLTVVQSHCKLGLTAT 481
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L GGFIA VQCAEVWCPMT EF+ EYL S+
Sbjct: 482 LVREDDKISDLNFLIGPKLYEANWMELQNGGFIARVQCAEVWCPMTPEFYREYLSI-RSR 540
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LYVMNPNKFRAC+FL+RFHE +R DKI+VF+DN+FAL EYA+++ KP IYG T+
Sbjct: 541 KRLLLYVMNPNKFRACQFLVRFHE-RRNDKIVVFSDNVFALKEYAVRMGKPYIYGPTTQG 599
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA- 359
ER +ILQ F + +NTIF+SKVGDNSID+P ANV+IQ+SSH GSRRQEAQRLGRILRA
Sbjct: 600 ERLQILQNFIHNPKVNTIFISKVGDNSIDLPAANVLIQVSSHGGSRRQEAQRLGRILRAK 659
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
KG L EEYNAFFYSLVS DT E+ YSTKRQ+FL+DQGYSFK IT L D
Sbjct: 660 KGSL-------AEEYNAFFYSLVSQDTVEVAYSTKRQRFLVDQGYSFKAITHLTGIDEEE 712
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKARRIAGSMSAMSGAQGM 477
L++ DEQ ALL KVL+A D E + + D RR AG+MS+MSGA
Sbjct: 713 QLAFTTKDEQHALLQKVLAASDLDAEEEMVPGEFGVGDKGKGGFRR-AGAMSSMSGADDS 771
Query: 478 VYMEYR 483
VYMEYR
Sbjct: 772 VYMEYR 777
>gi|388857563|emb|CCF48919.1| probable SSL2-DNA helicase [Ustilago hordei]
Length = 938
Score = 614 bits (1583), Expect = e-173, Method: Compositional matrix adjust.
Identities = 310/501 (61%), Positives = 373/501 (74%), Gaps = 29/501 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND++N DL ++LKP RPYQEKSL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 413 MLEEYDFRNDHLNADLEIDLKPITHIRPYQEKSLAKMFGNGRARSGIIVLPCGAGKTLVG 472
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS IQD+QI FT+D KE+F G +G+VV+T
Sbjct: 473 ITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGASGIVVST 532
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA GKRS S+K++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 533 YSMVANTGKRSHTSQKMMNFLESREWGFILLDEVHVVPASMFRRVLTKIKAHSKLGLTAT 592
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I +LNFL+GPKLYEANW+DL G IA VQCAEVWCPMT EF+ EYL +E S+
Sbjct: 593 LVREDEKIDELNFLVGPKLYEANWMDLAAKGHIATVQCAEVWCPMTPEFYREYL-REKSR 651
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNPNKF+AC+FLI +HE RGDKIIVF+DN+FAL YA+KL+KP I+G T+HV
Sbjct: 652 KKMLLYCMNPNKFQACQFLIDYHE-NRGDKIIVFSDNVFALEAYAIKLKKPYIHGGTAHV 710
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 711 ERMRILQNFQHNPLVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 770
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYSTKRQQFLIDQGY+F+VIT L +
Sbjct: 771 RR-------NDEGFNAFFYSLVSKDTAEMFYSTKRQQFLIDQGYAFRVITHLVGMEHMPG 823
Query: 421 LSYHRLDEQLALLGKVLSA-------GDDAVGLE-------------QLDEDADDIALHK 460
L Y EQ+ LL VL A G D G E + + A+ K
Sbjct: 824 LVYKSQAEQIELLQSVLIANESDADLGSDLQGTEFGSAAHRGGGGSGGRGGPSMNAAVAK 883
Query: 461 ARRIAGSMSAMSGAQGMVYME 481
A R GS++A+SGAQ M Y+E
Sbjct: 884 ASRTTGSLNALSGAQHMSYIE 904
>gi|448090109|ref|XP_004196988.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|448094493|ref|XP_004198019.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|359378410|emb|CCE84669.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
gi|359379441|emb|CCE83638.1| Piso0_004222 [Millerozyma farinosa CBS 7064]
Length = 849
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 302/495 (61%), Positives = 378/495 (76%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 341 VLEEYDFRNDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 400
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W +IQ + + FTS++KE F AG+VV+T
Sbjct: 401 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCSIQPENVAVFTSENKEMFSSEAGLVVST 460
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 461 YSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 520
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 521 LVREDEKIGDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RESAR 579
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP+KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 580 KRMLLYIMNPSKFQACQFLIHYHE-KRGDKIIVFSDNVYALREYALKLGKPFIYGSTPQQ 638
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 639 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 698
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L +S D
Sbjct: 699 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQVFLVDQGYAFKVITHLSGMESLPD 751
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-------------ARRIAGS 467
L+Y E+ LL KVL +DA GLE + +DAD + + A R AGS
Sbjct: 752 LAYASARERRELLQKVLLENEDAAGLE-IGDDADTNFMPREFRDKRMKTESSNATRSAGS 810
Query: 468 MSAMSGAQGMVYMEY 482
+++++G + M Y+EY
Sbjct: 811 LASLAGGEDMAYIEY 825
>gi|406603748|emb|CCH44773.1| DNA excision repair protein [Wickerhamomyces ciferrii]
Length = 831
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 300/495 (60%), Positives = 379/495 (76%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 322 VLEEYDFRNDQRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 381
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTSD+KE F +G+VV+T
Sbjct: 382 ITAACTIRKSTIVLCTSSVSVMQWRQQFLQWCTIQPESVAVFTSDNKEMFHSESGLVVST 441
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 442 YSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 501
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 502 LVREDDKISDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 560
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVFADN++AL EYA+KL KP IYG+T
Sbjct: 561 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFADNVYALQEYALKLGKPFIYGSTPQQ 619
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 620 ERMNILQNFQYNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 679
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L +S D
Sbjct: 680 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMESLPD 732
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-------------KARRIAGS 467
L+Y E+ LL +VL +DA LE + +DAD+ KA+R AGS
Sbjct: 733 LAYASARERRELLQEVLLKNEDAASLE-VGDDADNSVGRGNNVTKRSNNGKVKAQRTAGS 791
Query: 468 MSAMSGAQGMVYMEY 482
+++++G + M Y+EY
Sbjct: 792 LASLAGGEDMAYIEY 806
>gi|62896489|dbj|BAD96185.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 variant [Homo sapiens]
Length = 782
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/488 (62%), Positives = 376/488 (77%), Gaps = 23/488 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ + WGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQVWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 469
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 470 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L K IYG TS
Sbjct: 529 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKSYIYGPTSQG 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 588 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ FL+DQGYSFKVIT L + D
Sbjct: 648 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQGFLVDQGYSFKVITKLAGMEE-ED 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 701 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 753
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 754 DDTVYMEY 761
>gi|389749796|gb|EIM90967.1| DNA repair helicase rad25 [Stereum hirsutum FP-91666 SS1]
Length = 860
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 305/496 (61%), Positives = 370/496 (74%), Gaps = 24/496 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 334 MLEEYDFRNDTVNANLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 393
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS + D QI FT+D KE+F G++G+VV+T
Sbjct: 394 ITAACTIKKSCLVLCTSSVSVMQWRSQFMQWSNVTDRQIAVFTADQKEKFAGDSGIVVST 453
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA G RS ES K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 454 YSMVANTGNRSYESRKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 513
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 514 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQTR 572
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN+FAL YA KL+KP I+G T V
Sbjct: 573 KRMLLYCMNPRKFQACQFLIKYHE-DRGDKIIVFSDNVFALEAYAKKLKKPYIHGGTGQV 631
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 632 ERMRILQFFQHNPQVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 691
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L ++ D
Sbjct: 692 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLENLPD 744
Query: 421 LSYHRLDEQLALLGKVLSA---------------GDDAVGLEQLDEDADDIALHKARRIA 465
L Y EQ+ L+ VL A GD A + D A + A+R
Sbjct: 745 LVYKSQSEQIELMQSVLLANESAAELGTDIRAGEGDLAGTITSKDFGAPPGRVPAAQRTT 804
Query: 466 GSMSAMSGAQGMVYME 481
GS++A+SGA M Y+E
Sbjct: 805 GSLTALSGAAHMSYIE 820
>gi|392594902|gb|EIW84226.1| DNA helicase [Coniophora puteana RWD-64-598 SS2]
Length = 861
Score = 613 bits (1581), Expect = e-173, Method: Compositional matrix adjust.
Identities = 303/495 (61%), Positives = 367/495 (74%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +N +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 336 MLEEYDFRNDTINANLDIDLKPATTIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 395
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCLCL T++VSV QW QF WS + D QI FT+D KERF G +G+V++T
Sbjct: 396 ITAACTIKKSCLCLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTADQKERFAGESGIVIST 455
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 456 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 515
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 516 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 574
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI+FHE RGDKIIVF+DN++AL YA KL KP I+G T V
Sbjct: 575 KRMLLYCMNPKKFQACQFLIKFHE-DRGDKIIVFSDNVYALKAYAEKLGKPYIHGGTGQV 633
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 634 ERMRVLQWFQHDSNVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 693
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L D+ +
Sbjct: 694 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLDNLPN 746
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA-------------LHKARRIAG 466
L Y DEQ+ L+ VL A + L + D D+A R G
Sbjct: 747 LVYKTKDEQIELISSVLLANESEADLGSDIRADEGDLAGTVTSKDFGDPSKFPTTYRTTG 806
Query: 467 SMSAMSGAQGMVYME 481
S++A+SG Q M Y E
Sbjct: 807 SITALSGGQYMSYAE 821
>gi|431912953|gb|ELK14778.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pteropus alecto]
Length = 834
Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/482 (62%), Positives = 375/482 (77%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF ND+VNP++N+ LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 343 LLAEYDFWNDSVNPNINIGLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 402
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC I+K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 403 VTAACTIRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 461
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 462 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 521
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 522 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 580
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 581 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 639
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 640 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 699
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 700 KGM------IAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 752
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 753 LAFSMKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 811
Query: 481 EY 482
EY
Sbjct: 812 EY 813
>gi|384494451|gb|EIE84942.1| hypothetical protein RO3G_09652 [Rhizopus delemar RA 99-880]
Length = 831
Score = 612 bits (1578), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/495 (61%), Positives = 372/495 (75%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L ++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 313 MLEEYDFRNDTVNANLEIDLKPTTTIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 372
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS+++++Q+ FTSD KE+F G +G+V++T
Sbjct: 373 ITAACTIKKSCLVLCTSSVSVMQWKQQFLQWSSVKENQVAVFTSDCKEKFSGASGIVIST 432
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS +++K++E + +REWG LL+DEVHVVPA+MFR V++ +H KLGLTAT
Sbjct: 433 YSMVANKRKRSYDAQKMMEFLESREWGFLLLDEVHVVPANMFRTVVTTIAAHAKLGLTAT 492
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I DLNFLIGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL ENS+
Sbjct: 493 LVREDEKIDDLNFLIGPKLYEANWMDLASRGHIANVQCAEVWCPMTPEFYKEYL-YENSR 551
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LYVMNP KF+AC++LI +HE +RGDKIIVF+DN++AL EYA KL KP IYG T
Sbjct: 552 KRTLLYVMNPKKFQACQYLIGYHE-RRGDKIIVFSDNVYALIEYAKKLGKPYIYGGTGQQ 610
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 611 ERMRILQNFQYNPAVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 670
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT+L DS +
Sbjct: 671 RR-------NDEGFNAFFYSLVSRDTQEMFYSTKRQQFLIDQGYAFKVITNLEGMDSDPN 723
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAG-------------S 467
+ + EQ+ LL VL D +G E+L + DD+ R++A +
Sbjct: 724 IVFRTHQEQMDLLKAVLLTNDTDLGEEELI-NVDDVGRITDRKVAAKNRTSGLVKRQVTT 782
Query: 468 MSAMSGAQGMVYMEY 482
++G M Y+EY
Sbjct: 783 SKTLAGGDNMAYIEY 797
>gi|448508504|ref|XP_003865944.1| hypothetical protein CORT_0A01110 [Candida orthopsilosis Co 90-125]
gi|380350282|emb|CCG20503.1| hypothetical protein CORT_0A01110 [Candida orthopsilosis Co 90-125]
Length = 848
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/495 (60%), Positives = 377/495 (76%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 328 VLEEYDFRNDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 387
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 388 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASESGLVVST 447
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA+MFR+V++ +H KLGLTAT
Sbjct: 448 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPANMFRRVVTTIAAHAKLGLTAT 507
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 508 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 566
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 567 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 625
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 626 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 685
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 686 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 738
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-------------ARRIAGS 467
L+Y E+ LL +VL +DA GLE + +DAD + + A R AGS
Sbjct: 739 LAYASARERRELLQQVLLKNEDAAGLE-IGDDADTNFIPREQRQRMENGKQSGATRSAGS 797
Query: 468 MSAMSGAQGMVYMEY 482
++ ++G + M Y+EY
Sbjct: 798 LAGLAGGEDMAYIEY 812
>gi|449543176|gb|EMD34153.1| hypothetical protein CERSUDRAFT_117644 [Ceriporiopsis subvermispora
B]
Length = 862
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 306/495 (61%), Positives = 369/495 (74%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 MLEEYDFRNDTVNANLDIDLKPSTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS + + QI FT+D KE+F G++G+VV+T
Sbjct: 397 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTERQIAVFTADQKEKFAGDSGIVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 457 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 517 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN+FAL YA KL K I+G T V
Sbjct: 576 KRMLLYCMNPRKFQACQFLIKYHE-DRGDKIIVFSDNVFALEAYAKKLNKLYIHGGTGQV 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S D+NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMRILQWFQHSPDVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L + D
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLEGLRD 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA-------------LHKARRIAG 466
L Y DEQ+ LL VL A + L + D+A A+R G
Sbjct: 748 LVYQSRDEQIELLSSVLLANESEADLGTDVRAGEGDLAGTITSKDFGLPGRFPGAQRTTG 807
Query: 467 SMSAMSGAQGMVYME 481
S++A+SGAQ M Y+E
Sbjct: 808 SLTALSGAQHMSYVE 822
>gi|254566415|ref|XP_002490318.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Komagataella pastoris GS115]
gi|238030114|emb|CAY68037.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Komagataella pastoris GS115]
gi|328350713|emb|CCA37113.1| DNA excision repair protein ERCC-3 [Komagataella pastoris CBS 7435]
Length = 820
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/495 (60%), Positives = 374/495 (75%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 312 VLEEYDFRNDQRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 371
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W TIQ + + FTS++KE F G+AG+VV+T
Sbjct: 372 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTGDAGLVVST 431
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 432 YSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 491
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 492 LVREDDKIGDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RETSR 550
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE QRGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 551 KRMLLYIMNPTKFQACQFLIHYHE-QRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 609
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 610 ERMNILQNFQYNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 669
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L +S +
Sbjct: 670 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMESLPN 722
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-------------ALHKARRIAGS 467
L+Y E+ LL VL +DA G+E ED++++ A R GS
Sbjct: 723 LAYSSARERRELLQDVLLKNEDAAGIEA-GEDSENMIGGGVSKRVRSGGQSSSATRTTGS 781
Query: 468 MSAMSGAQGMVYMEY 482
++ ++G + M Y+EY
Sbjct: 782 LAGLAGGEDMAYVEY 796
>gi|354544829|emb|CCE41554.1| hypothetical protein CPAR2_801060 [Candida parapsilosis]
Length = 857
Score = 612 bits (1577), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/494 (60%), Positives = 378/494 (76%), Gaps = 21/494 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 328 VLEEYDFRNDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 387
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ +++ FTS++KE F +G+VV+T
Sbjct: 388 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPEKVAVFTSENKEMFASESGLVVST 447
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA+MFR+V++ +H KLGLTAT
Sbjct: 448 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPANMFRRVVTTIAAHAKLGLTAT 507
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 508 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 566
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 567 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 625
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 626 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 685
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 686 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 738
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK-----------ARRIAGSM 468
L+Y E+ LL +VL +DA GLE D+ D + I+ + A R AGS+
Sbjct: 739 LAYASARERRELLQQVLLKNEDAAGLEIGDDVDTNFISREQRQRMDNSKQSGATRSAGSL 798
Query: 469 SAMSGAQGMVYMEY 482
+ ++G + M Y+EY
Sbjct: 799 AGLAGGEDMAYIEY 812
>gi|291225864|ref|XP_002732918.1| PREDICTED: excision repair cross-complementing rodent repair
deficiency, complementation group 3-like [Saccoglossus
kowalevskii]
Length = 824
Score = 611 bits (1576), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/503 (60%), Positives = 377/503 (74%), Gaps = 15/503 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPDLN++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 336 LLAEYDFRNDTVNPDLNIDLKPMTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 395
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K C+ L T+ VSV+QW QFKLWST D ICRFTS++K++ G V++TT
Sbjct: 396 VTAACTVRKRCMVLCTSGVSVEQWKSQFKLWSTSDDSMICRFTSEAKDKPMG-CSVLITT 454
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+EK++E I ++EWGL+L+DEVH +PA FR+V++ ++HCKLGLTAT
Sbjct: 455 YSMMGHSTKRSWEAEKVMEWIHHQEWGLMLLDEVHTIPARQFRRVLTSVQAHCKLGLTAT 514
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANWL+L GFIA VQCAEVWCPMT EF+ EYL + S+
Sbjct: 515 LVREDDKIADLNFLIGPKLYEANWLELQDLGFIAKVQCAEVWCPMTPEFYREYLHIQ-SR 573
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LYVMNPNKFRACEFL+++HE QR DK+IVF+DN+FAL YA+ + KP IYG T+
Sbjct: 574 KRILLYVMNPNKFRACEFLVKYHE-QRNDKVIVFSDNVFALKHYAVAMGKPYIYGPTTQG 632
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 633 ERMQILQNFKHNPAVNTIFISKVGDTSFDLPEANVLIQVSSHGGSRRQEAQRLGRILRAK 692
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DTQEM+YS KRQ+FL++QGYSFKVIT L D
Sbjct: 693 K------GSAAEEYNAFFYTLVSQDTQEMYYSIKRQRFLVNQGYSFKVITKLAGMDED-H 745
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y EQ LL +VL+A D E++ + + RR+ GSMS+MSGA VYM
Sbjct: 746 LHYSTKHEQQRLLQQVLAASDADADEERVVGELNAKGSQVVRRV-GSMSSMSGADDQVYM 804
Query: 481 EYRYDPWQKQLFKASSQIFFSFQ 503
E++ K K+S +F F+
Sbjct: 805 EFQ----SKSKLKSSHPLFKKFR 823
>gi|320167881|gb|EFW44780.1| DNA repair helicase RAD25 [Capsaspora owczarzaki ATCC 30864]
Length = 739
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 305/496 (61%), Positives = 376/496 (75%), Gaps = 25/496 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+L+++LKP A RPYQEKSL+KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 231 LLEEYDFRNDTVNPNLDLDLKPIATLRPYQEKSLNKMFGNGRARSGVIVLPCGAGKTLVG 290
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C +KK L L T+ V+V+QWA Q+++WSTI D+I RFTSDSK+ + + G+V++T
Sbjct: 291 VTATCTVKKRTLVLCTSGVAVEQWARQYQMWSTIHPDRIARFTSDSKDPPQ-DCGIVIST 349
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVAF GKRS ESE I++ ++N EWGL+++DEVHVVPA MFRKV+ +HCKLGLTAT
Sbjct: 350 YSMVAFSGKRSAESEVIMQFMQNTEWGLVVLDEVHVVPADMFRKVLMTVSAHCKLGLTAT 409
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANW+DL K GFIA V CAEVWCPM+ EF+ YL+ ++
Sbjct: 410 LVREDDKITDLNFLIGPKLYEANWMDLQKRGFIARVSCAEVWCPMSPEFYKVYLETR-TR 468
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+Q L MNP KF+ C+FLIR+HE +RGDKIIVF+DN+FAL YA K+ KP IYG T
Sbjct: 469 KRQLLECMNPLKFQTCQFLIRYHE-KRGDKIIVFSDNVFALKVYATKMGKPFIYGQTGQT 527
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA- 359
ER ++LQ F+ + L+TIF+SKVGDNS D+PEANV+IQIS+H GSRRQEAQRLGRILRA
Sbjct: 528 ERMRVLQHFQHNAGLSTIFISKVGDNSFDLPEANVLIQISAHYGSRRQEAQRLGRILRAK 587
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
KG L EEYNAFFYSLVS DT EM+YS KRQQFL+DQGY+FKVIT L +
Sbjct: 588 KGSL-------AEEYNAFFYSLVSQDTSEMYYSGKRQQFLVDQGYTFKVITKLEGMEDIP 640
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDED----------ADDIALHKARRIA---- 465
DL+Y +QL LL V+ A D E+L D A + K+R+ A
Sbjct: 641 DLAYRSKTDQLDLLTTVIQANDADAEDEKLGGDDLLTGGEARSAAGASGKKSRKAATRRI 700
Query: 466 GSMSAMSGAQGMVYME 481
GSM ++SGA GM YME
Sbjct: 701 GSMQSLSGADGMAYME 716
>gi|294657393|ref|XP_459707.2| DEHA2E09174p [Debaryomyces hansenii CBS767]
gi|199432659|emb|CAG87943.2| DEHA2E09174p [Debaryomyces hansenii CBS767]
Length = 852
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/497 (60%), Positives = 378/497 (76%), Gaps = 25/497 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 340 VLEEYDFRNDDRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 399
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +AG+VV+T
Sbjct: 400 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTSDAGLVVST 459
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 460 YSMVANTRNRSHDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 519
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 520 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RESAR 578
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL KP IYG+TS
Sbjct: 579 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQGYALKLGKPFIYGSTSQQ 637
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 638 ERMKILQNFQHNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 697
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 698 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 750
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK---------------ARRIA 465
L+Y E+ LL +VL +DA GLE + +DAD + + A R A
Sbjct: 751 LAYSSARERRELLQEVLLKNEDAAGLE-IGDDADTNFIPREQREKRAKLESNGSSATRTA 809
Query: 466 GSMSAMSGAQGMVYMEY 482
GS++ ++G + M Y+EY
Sbjct: 810 GSLAGLAGGEDMAYIEY 826
>gi|68480483|ref|XP_715839.1| hypothetical protein CaO19.10376 [Candida albicans SC5314]
gi|68480588|ref|XP_715788.1| hypothetical protein CaO19.2857 [Candida albicans SC5314]
gi|46437427|gb|EAK96774.1| hypothetical protein CaO19.2857 [Candida albicans SC5314]
gi|46437480|gb|EAK96826.1| hypothetical protein CaO19.10376 [Candida albicans SC5314]
Length = 843
Score = 611 bits (1575), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/496 (59%), Positives = 377/496 (76%), Gaps = 24/496 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 330 VLEEYDFRHDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 389
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 390 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASESGLVVST 449
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 450 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQMFRRVVTTIAAHAKLGLTAT 509
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 510 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 568
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA++L KP IYG+T
Sbjct: 569 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALRLGKPFIYGSTPQQ 627
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 628 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 687
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 688 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 740
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI--------------AG 466
L+Y E+ LL +VL +DA GLE + +DAD + K +R+ +G
Sbjct: 741 LAYSSARERRELLQQVLLKNEDAAGLE-IGDDADTNFISKEKRMRLEQERNGGGATYSSG 799
Query: 467 SMSAMSGAQGMVYMEY 482
S++ ++G + M Y+EY
Sbjct: 800 SLAGLAGGEDMAYIEY 815
>gi|238879758|gb|EEQ43396.1| DNA repair helicase RAD25 [Candida albicans WO-1]
Length = 843
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/496 (59%), Positives = 377/496 (76%), Gaps = 24/496 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 330 VLEEYDFRHDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 389
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 390 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASESGLVVST 449
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 450 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQMFRRVVTTIAAHAKLGLTAT 509
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 510 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 568
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA++L KP IYG+T
Sbjct: 569 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALRLGKPFIYGSTPQQ 627
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 628 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 687
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 688 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 740
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI--------------AG 466
L+Y E+ LL +VL +DA GLE + +DAD + K +R+ +G
Sbjct: 741 LAYSSARERRELLQQVLLKNEDAAGLE-IGDDADTNFISKEKRMRLEQERNGGGATYSSG 799
Query: 467 SMSAMSGAQGMVYMEY 482
S++ ++G + M Y+EY
Sbjct: 800 SLAGLAGGEDMAYIEY 815
>gi|169859418|ref|XP_001836349.1| DNA helicase [Coprinopsis cinerea okayama7#130]
gi|116502638|gb|EAU85533.1| DNA helicase [Coprinopsis cinerea okayama7#130]
Length = 848
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 305/495 (61%), Positives = 368/495 (74%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NP+L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 320 MLEEYDFRNDTINPNLDIDLKPATTIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 379
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS L L T++VSV QW QF WS I D QI FT+D KE+F G +G+VV+T
Sbjct: 380 ITAACTIKKSTLVLCTSSVSVMQWRQQFIQWSNITDRQIAVFTADQKEKFAGESGIVVST 439
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 440 YSMVANTHNRSHDSKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 499
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 500 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 558
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKF+AC+FLIR+HE RGDK+IVF+DN++AL YA L KP I+GAT V
Sbjct: 559 KRMLLYCMNPNKFQACQFLIRYHE-GRGDKVIVFSDNVYALEAYAKHLGKPYIHGATGQV 617
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ S +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 618 ERMRILSHFQHSPLVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 677
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGYSFKVIT L + D
Sbjct: 678 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYSFKVITHLDGLEDLPD 730
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA-------------LHKARRIAG 466
L+Y DEQ+ LL VL A + L + D+A +R G
Sbjct: 731 LAYRTKDEQIELLSSVLLANESEADLGSDVRASEGDLAGTVTSLDFGGPGRFPGVQRTTG 790
Query: 467 SMSAMSGAQGMVYME 481
S++A+SGAQ M Y+E
Sbjct: 791 SLTALSGAQHMSYVE 805
>gi|409078300|gb|EKM78663.1| hypothetical protein AGABI1DRAFT_121098 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 848
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/491 (61%), Positives = 369/491 (75%), Gaps = 19/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 328 MLEEYDFRNDTVNANLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 387
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS I D QI FT+D KE+F G++G+VV+T
Sbjct: 388 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNITDRQIAVFTADQKEKFAGDSGIVVST 447
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 448 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 507
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ +YL +E S+
Sbjct: 508 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYGQYL-REQSR 566
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKF+AC+FLIR+HE +RGDK+IVF+DN++AL YA +L K I+G T V
Sbjct: 567 KRMLLYCMNPNKFQACQFLIRYHE-ERGDKVIVFSDNVYALEAYARRLNKLYIHGGTGQV 625
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ S +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 626 ERMRILSHFQHSPKVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 685
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQQFLIDQGY+FKVIT L D
Sbjct: 686 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYAFKVITHLDGLTEMPD 738
Query: 421 LSYHRLDEQLALLGKVLSAGDD--AVGLEQLDEDAD--------DIALHKARRIAGSMSA 470
L Y DEQ+ LL VL A + +G + + D D K +R GS++A
Sbjct: 739 LVYKTRDEQIELLQSVLLANESEAELGSDIRASEGDLAGTVTSKDFGPTKFQRTTGSLNA 798
Query: 471 MSGAQGMVYME 481
+SGAQ M Y+E
Sbjct: 799 LSGAQHMSYIE 809
>gi|403412105|emb|CCL98805.1| predicted protein [Fibroporia radiculosa]
Length = 860
Score = 610 bits (1574), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/495 (61%), Positives = 370/495 (74%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 339 MLEEYDFRNDTVNANLDIDLKPSTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 398
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS I D Q+ FT+D KE+F G++G+V++T
Sbjct: 399 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNITDRQVAVFTADQKEKFAGDSGIVIST 458
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFRKV++ K+H KLGLTAT
Sbjct: 459 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRKVVTTIKAHSKLGLTAT 518
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 519 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 577
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN+FAL YA KL+KP I+G T V
Sbjct: 578 KRMLLYCMNPRKFQACQFLIKYHE-DRGDKIIVFSDNVFALEAYAKKLKKPYIHGGTGQV 636
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S D+ TIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 637 ERMRILQWFQHSPDVQTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 696
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L ++
Sbjct: 697 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLETLGG 749
Query: 421 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIA-------------LHKARRIAG 466
L Y DEQ+ LL VL A + +A + D+A + +R G
Sbjct: 750 LVYKTRDEQIELLSSVLLASEHEADPGTDVRAGEGDLAGTITSKDFGVPGKMPGVQRTGG 809
Query: 467 SMSAMSGAQGMVYME 481
S++A+SG Q M Y+E
Sbjct: 810 SLTALSGGQHMSYVE 824
>gi|146412918|ref|XP_001482430.1| hypothetical protein PGUG_05450 [Meyerozyma guilliermondii ATCC
6260]
Length = 840
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/493 (60%), Positives = 374/493 (75%), Gaps = 20/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N DLN++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 336 VLEEYDFRNDDRNADLNIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 395
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF WSTIQ + + FTS++KE F +G+VV+T
Sbjct: 396 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWSTIQPENVATFTSENKEMFTSESGLVVST 455
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 456 YSMVANTRNRSYDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 515
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 516 LVREDDKIYDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RETSR 574
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 575 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLEKPFIYGSTPQQ 633
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 634 ERMKILQNFQHNDEINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 693
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 694 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 746
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK----------ARRIAGSMS 469
L+Y E+ LL VL +DA GLE D+ D + I + A R GS++
Sbjct: 747 LAYSSPRERRELLQAVLLKNEDAAGLEVGDDLDTNFITQERRNKIESEQSDAVRSTGSLA 806
Query: 470 AMSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 807 GLAGGEDMAYVEY 819
>gi|255714519|ref|XP_002553541.1| KLTH0E01210p [Lachancea thermotolerans]
gi|238934923|emb|CAR23104.1| KLTH0E01210p [Lachancea thermotolerans CBS 6340]
Length = 839
Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust.
Identities = 296/491 (60%), Positives = 377/491 (76%), Gaps = 18/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 333 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + + FTSD+KE F+ +G+VV+T
Sbjct: 393 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENVAVFTSDNKEMFQTESGLVVST 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 453 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 513 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 572 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERMNILQNFQFNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L +S +
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMESLPN 743
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI---------ALHKARRIAGSMSAM 471
L+Y E+ LL +VL ++A G+E D+ + + A KA R GS+S +
Sbjct: 744 LTYSTARERRELLQEVLLKNEEAAGIEVGDDAENSVGRGAHANKKAKSKAVRGEGSLSGL 803
Query: 472 SGAQGMVYMEY 482
+G + M Y+EY
Sbjct: 804 AGGEDMAYVEY 814
>gi|190348816|gb|EDK41352.2| hypothetical protein PGUG_05450 [Meyerozyma guilliermondii ATCC
6260]
Length = 840
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/493 (60%), Positives = 374/493 (75%), Gaps = 20/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N DLN++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 336 VLEEYDFRNDDRNADLNIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 395
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF WSTIQ + + FTS++KE F +G+VV+T
Sbjct: 396 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWSTIQPENVATFTSENKEMFTSESGLVVST 455
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 456 YSMVANTRNRSYDSQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 515
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 516 LVREDDKIYDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RETSR 574
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 575 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLEKPFIYGSTPQQ 633
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 634 ERMKILQNFQHNDEINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 693
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 694 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 746
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK----------ARRIAGSMS 469
L+Y E+ LL VL +DA GLE D+ D + I + A R GS++
Sbjct: 747 LAYSSPRERRELLQAVLLKNEDAAGLEVGDDLDTNFITQERRNKIESEQSDAVRSTGSLA 806
Query: 470 AMSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 807 GLAGGEDMAYVEY 819
>gi|426199291|gb|EKV49216.1| hypothetical protein AGABI2DRAFT_218349 [Agaricus bisporus var.
bisporus H97]
Length = 855
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 303/491 (61%), Positives = 369/491 (75%), Gaps = 19/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 335 MLEEYDFRNDTVNANLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 394
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS I D QI FT+D KE+F G++G+VV+T
Sbjct: 395 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNITDRQIAVFTADQKEKFAGDSGIVVST 454
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 455 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 514
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ +YL +E S+
Sbjct: 515 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYGQYL-REQSR 573
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKF+AC+FLIR+HE +RGDK+IVF+DN++AL YA +L K I+G T V
Sbjct: 574 KRMLLYCMNPNKFQACQFLIRYHE-ERGDKVIVFSDNVYALEAYARRLNKLYIHGGTGQV 632
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ S +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 633 ERMRILSHFQHSPKVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 692
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQQFLIDQGY+FKVIT L D
Sbjct: 693 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYAFKVITHLDGLTEMPD 745
Query: 421 LSYHRLDEQLALLGKVLSAGDD--AVGLEQLDEDAD--------DIALHKARRIAGSMSA 470
L Y DEQ+ LL VL A + +G + + D D K +R GS++A
Sbjct: 746 LVYKTRDEQIELLQSVLLANESEAELGSDIRASEGDLAGTVTSKDFGPTKFQRTTGSLNA 805
Query: 471 MSGAQGMVYME 481
+SGAQ M Y+E
Sbjct: 806 LSGAQHMSYIE 816
>gi|255722173|ref|XP_002546021.1| DNA repair helicase RAD25 [Candida tropicalis MYA-3404]
gi|240136510|gb|EER36063.1| DNA repair helicase RAD25 [Candida tropicalis MYA-3404]
Length = 846
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 300/496 (60%), Positives = 377/496 (76%), Gaps = 24/496 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 332 VLEEYDFRNDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 391
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 392 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASESGLVVST 451
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 452 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQMFRRVVTTIAAHAKLGLTAT 511
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 512 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 570
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 571 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 629
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 630 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 689
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 690 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 742
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI--------------AG 466
L+Y E+ LL +VL +DA GLE + +DAD + K +R+ AG
Sbjct: 743 LAYSSAREKRELLQQVLLKNEDAAGLE-IGDDADTNFISKEKRMRLEQERNGGGSSRSAG 801
Query: 467 SMSAMSGAQGMVYMEY 482
S++ ++G + M Y+EY
Sbjct: 802 SLAGLAGGEDMAYIEY 817
>gi|302684387|ref|XP_003031874.1| hypothetical protein SCHCODRAFT_68127 [Schizophyllum commune H4-8]
gi|300105567|gb|EFI96971.1| hypothetical protein SCHCODRAFT_68127 [Schizophyllum commune H4-8]
Length = 849
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 304/492 (61%), Positives = 369/492 (75%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NP+L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 330 MLEEYDFRNDTINPNLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 389
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS D QI FT++SKE+F +G++++T
Sbjct: 390 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNTTDKQIAVFTAESKEKFATESGIIIST 449
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 450 YSMVANTHNRSHDSKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 509
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 510 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 568
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKF+AC+FLI+FHE +RGDKIIVF+DN++AL YA +L K I+GAT V
Sbjct: 569 KRMLLYCMNPNKFQACQFLIKFHE-ERGDKIIVFSDNVYALEAYAKRLGKLYIHGATGQV 627
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 628 ERMRILSQFQHNPKVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 687
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L D+ D
Sbjct: 688 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGMDALPD 740
Query: 421 LSYHRLDEQLALLGKVLSA-------GDDAVGLE-QLDEDADDIALHK---ARRIAGSMS 469
L Y DEQ+ LL VL A G D +E L K A+R GS+S
Sbjct: 741 LVYRTRDEQIELLSSVLLATENEADVGSDIKAVEGDLAGTVTSTVRTKWPGAQRTTGSLS 800
Query: 470 AMSGAQGMVYME 481
A+SG Q M Y+E
Sbjct: 801 ALSGGQHMSYVE 812
>gi|395332204|gb|EJF64583.1| DNA helicase [Dichomitus squalens LYAD-421 SS1]
Length = 862
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 310/495 (62%), Positives = 368/495 (74%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L ++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 MLEEYDFRNDTVNANLEIDLKPSTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS I D QI FT+D KE+F G++G+VV+T
Sbjct: 397 ITAACTIKKSCLVLCTSSVSVMQWRQQFMQWSNITDKQIAVFTADQKEKFAGDSGIVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA G RS ES+K++E + +REWG +L+DEVHVVPA MFR+V+S K+H KLGLTAT
Sbjct: 457 YSMVANTGNRSHESKKMMEFLTSREWGFILLDEVHVVPAVMFRRVVSTIKAHSKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW++L G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 517 LVREDDKIADLNYMIGPKLYEANWMELAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN+FAL YA KL K I+G T
Sbjct: 576 KRMLLYCMNPRKFQACQFLIKYHE-DRGDKIIVFSDNVFALEAYAKKLGKLYIHGGTGQT 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMRILQHFQHSPEVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L D
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLDDLPG 747
Query: 421 LSYHRLDEQLALLGKVLSA-------GDDAVG----LEQLDEDADDIALHKA---RRIAG 466
L Y DEQ+ LL VL A G D V L+ D KA +R G
Sbjct: 748 LVYKSRDEQIELLSSVLLANESEAELGTDVVASEGDLKGTVTSKDFGTPSKAPTVQRTTG 807
Query: 467 SMSAMSGAQGMVYME 481
S++A+SGAQ M Y+E
Sbjct: 808 SLTALSGAQHMSYVE 822
>gi|344304136|gb|EGW34385.1| DNA repair helicase RAD25 [Spathaspora passalidarum NRRL Y-27907]
Length = 842
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 299/494 (60%), Positives = 376/494 (76%), Gaps = 21/494 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND N DL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 331 VLEEYDFRNDARNADLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 390
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F ++G+VV+T
Sbjct: 391 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTSDSGLVVST 450
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 451 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 510
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 511 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-RESAR 569
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 570 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 628
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 629 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 688
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 689 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 741
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK-----------ARRIAGSM 468
L+Y E+ LL +VL +DA GLE D+ D + I+ K A R AGS+
Sbjct: 742 LAYASPRERRELLQQVLLKNEDAAGLEVGDDVDTNFISKEKRMKLERQQGSGATRTAGSL 801
Query: 469 SAMSGAQGMVYMEY 482
+ ++G + M Y+EY
Sbjct: 802 AGLAGGEDMAYIEY 815
>gi|149246257|ref|XP_001527598.1| DNA repair helicase RAD25 [Lodderomyces elongisporus NRRL YB-4239]
gi|146447552|gb|EDK41940.1| DNA repair helicase RAD25 [Lodderomyces elongisporus NRRL YB-4239]
Length = 890
Score = 609 bits (1571), Expect = e-172, Method: Compositional matrix adjust.
Identities = 297/495 (60%), Positives = 377/495 (76%), Gaps = 22/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 351 VLEEYDFRNDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 410
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC ++KS + L T++VSV QW QF W TIQ D + FTS++KE F +G+VV+T
Sbjct: 411 ITAACTVRKSVIVLCTSSVSVMQWRQQFLQWCTIQPDNVAVFTSENKEMFASESGLVVST 470
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA+MFR+V++ +H KLGLTAT
Sbjct: 471 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPANMFRRVVTTIAAHAKLGLTAT 530
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 531 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 589
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP I+G+T
Sbjct: 590 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIFGSTPQQ 648
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 649 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 708
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 709 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 761
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK------------ARRIAGS 467
L+Y E+ LL +VL +DA GLE D+ D + I+ + A R +GS
Sbjct: 762 LAYASARERRELLQQVLLKNEDAAGLEIGDDVDTNFISREQRQRYENSKQNGGASRTSGS 821
Query: 468 MSAMSGAQGMVYMEY 482
++ ++G + M Y+EY
Sbjct: 822 LAGLAGGEDMAYIEY 836
>gi|320164128|gb|EFW41027.1| transcription factor IIH subunit [Capsaspora owczarzaki ATCC 30864]
Length = 892
Score = 609 bits (1571), Expect = e-171, Method: Compositional matrix adjust.
Identities = 305/496 (61%), Positives = 376/496 (75%), Gaps = 25/496 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+L+++LKP A RPYQEKSL+KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 384 LLEEYDFRNDTVNPNLDLDLKPIATLRPYQEKSLNKMFGNGRARSGVIVLPCGAGKTLVG 443
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C +KK L L T+ V+V+QWA Q+++WSTI D+I RFTSDSK+ + + G+V++T
Sbjct: 444 VTATCTVKKRTLVLCTSGVAVEQWARQYQMWSTIHPDRIARFTSDSKDPPQ-DCGIVIST 502
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVAF GKRS ESE I++ ++N EWGL+++DEVHVVPA MFRKV+ +HCKLGLTAT
Sbjct: 503 YSMVAFSGKRSAESEVIMQFMQNTEWGLVVLDEVHVVPADMFRKVLMTVSAHCKLGLTAT 562
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANW+DL K GFIA V CAEVWCPM+ EF+ YL+ ++
Sbjct: 563 LVREDDKITDLNFLIGPKLYEANWMDLQKRGFIARVSCAEVWCPMSPEFYKVYLET-RTR 621
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+Q L MNP KF+ C+FLIR+HE +RGDKIIVF+DN+FAL YA K+ KP IYG T
Sbjct: 622 KRQLLECMNPLKFQTCQFLIRYHE-KRGDKIIVFSDNVFALKVYATKMGKPFIYGQTGQT 680
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA- 359
ER ++LQ F+ + L+TIF+SKVGDNS D+PEANV+IQIS+H GSRRQEAQRLGRILRA
Sbjct: 681 ERMRVLQHFQHNAGLSTIFISKVGDNSFDLPEANVLIQISAHYGSRRQEAQRLGRILRAK 740
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
KG L EEYNAFFYSLVS DT EM+YS KRQQFL+DQGY+FKVIT L +
Sbjct: 741 KGSL-------AEEYNAFFYSLVSQDTSEMYYSGKRQQFLVDQGYTFKVITKLEGMEDIP 793
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDED----------ADDIALHKARRIA---- 465
DL+Y +QL LL V+ A D E+L D A + K+R+ A
Sbjct: 794 DLAYRSKTDQLDLLTTVIQANDADAEDEKLGGDDLLTGGEARSAAGASGKKSRKAATRRI 853
Query: 466 GSMSAMSGAQGMVYME 481
GSM ++SGA GM YME
Sbjct: 854 GSMQSLSGADGMAYME 869
>gi|328858647|gb|EGG07759.1| hypothetical protein MELLADRAFT_85492 [Melampsora larici-populina
98AG31]
Length = 881
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/506 (60%), Positives = 373/506 (73%), Gaps = 23/506 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNP L ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 359 MLEEYDFRNDTVNPTLEIDLKPATQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 418
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AA I+KS LCL T+ VSV QW QF +WS IQD QI FT+++KE+F G +G+VV+T
Sbjct: 419 ITAASTIRKSVLCLCTSGVSVMQWRQQFLMWSNIQDRQISVFTAETKEKFAGASGIVVST 478
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS +S+K+++ + +REWGL+L+DEVHVVPA MFR+V+ K+H KLGLTAT
Sbjct: 479 YSMVANRTKRSHDSQKMMDFLTSREWGLILLDEVHVVPAAMFRRVVGTIKAHAKLGLTAT 538
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 539 LVREDDKIDDLNFLIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REKSR 597
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI+FHE +RGDKIIVF+DN++AL YA KLRK I+G T V
Sbjct: 598 KRNLLYCMNPQKFQACQFLIKFHE-ERGDKIIVFSDNVYALEAYAKKLRKLYIHGGTPQV 656
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 657 ERMRILQNFQHNPLVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 716
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQE ++STKRQQFLIDQGY+FKVI+ L ++ +
Sbjct: 717 RR-------NDEGFNAFFYSLVSRDTQEFYFSTKRQQFLIDQGYAFKVISHLQGLENLPE 769
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-------------ARRIAGS 467
L Y DEQ+ LL VL A + + DDI RR+ G+
Sbjct: 770 LVYATKDEQIELLQSVLLANESDADIGADVRMLDDIGGKGFGGNGKGAAKNAGVRRVVGN 829
Query: 468 MSAMSGAQGMVYMEYRYDPWQKQLFK 493
+ +SG Q M Y+E R KQL K
Sbjct: 830 LGGLSGGQSMSYIE-RNKSANKQLSK 854
>gi|403173052|ref|XP_003332158.2| DNA excision repair protein ERCC-3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375170107|gb|EFP87739.2| DNA excision repair protein ERCC-3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 980
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 312/508 (61%), Positives = 375/508 (73%), Gaps = 25/508 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNP L ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 452 MLEEYDFRNDTVNPTLEIDLKPATQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 511
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AA I+KS LCL T+ VSV QW QF +WS IQD QI FT+D KE+F G +G+VV+T
Sbjct: 512 ITAASTIRKSVLCLCTSGVSVMQWRQQFLMWSNIQDRQISVFTADQKEKFAGASGIVVST 571
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS +S+K+++ + +REWGL+L+DEVHVVPA MFR+V+ K+H KLGLTAT
Sbjct: 572 YSMVANRTKRSHDSQKMMDFLTSREWGLILLDEVHVVPAAMFRRVVGTIKAHAKLGLTAT 631
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 632 LVREDDKIDDLNFLIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REKSR 690
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNP KF+AC+FLI++HE RGDKIIVF+DN++AL YA KLRK I+G T V
Sbjct: 691 KKNLLYCMNPQKFQACQFLIKYHE-DRGDKIIVFSDNVYALEAYAKKLRKLYIHGGTPQV 749
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 750 ERMRILQNFQHNPLVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 809
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQE ++STKRQQFLIDQGY+FKVI+ L ++ D
Sbjct: 810 RR-------NDEGFNAFFYSLVSRDTQEFYFSTKRQQFLIDQGYAFKVISHLQGLENLPD 862
Query: 421 LSYHRLDEQLALLGKVLSA--------------GDDAVGLEQLDEDAD-DIALHKARRIA 465
L Y +EQ+ LL VL A GDD G + +A +RI
Sbjct: 863 LVYSSKEEQIELLQSVLLANESDAEIGTDVKNFGDDLRGPNDRQGNKRIGMAGAGVKRIV 922
Query: 466 GSMSAMSGAQGMVYMEYRYDPWQKQLFK 493
G++SA+SG Q M Y+E R KQL K
Sbjct: 923 GNLSALSGGQSMSYIE-RNKSANKQLAK 949
>gi|260942042|ref|XP_002615187.1| hypothetical protein CLUG_05202 [Clavispora lusitaniae ATCC 42720]
gi|238851610|gb|EEQ41074.1| hypothetical protein CLUG_05202 [Clavispora lusitaniae ATCC 42720]
Length = 846
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/489 (60%), Positives = 373/489 (76%), Gaps = 16/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N +L+++LKP Q RPYQEKSLSKMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 341 VLEEYDFRNDDRNANLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGVIVLPCGAGKTLVG 400
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W TIQ + + FTS++KE F AG+VV+T
Sbjct: 401 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFSSEAGLVVST 460
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +SEK+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 461 YSMVANTRNRSHDSEKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 520
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 521 LVREDEKIYDLNFLIGPKLYEANWMELAQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 579
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 580 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 638
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 639 ERMTILQNFQHNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 698
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L +S D
Sbjct: 699 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMESLPD 751
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-------ALHKARRIAGSMSAMSG 473
L+Y E+ LL +VL +DA G+E D++ + + A R AGS++ ++G
Sbjct: 752 LAYSSARERRELLQQVLLKNEDAAGVEVGDDEDTNFMPKDRRHEMSSASRTAGSLAGLAG 811
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 812 GEDMAYVEY 820
>gi|241958282|ref|XP_002421860.1| DNA repair helicase, putative [Candida dubliniensis CD36]
gi|223645205|emb|CAX39804.1| DNA repair helicase, putative [Candida dubliniensis CD36]
Length = 846
Score = 609 bits (1570), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/496 (59%), Positives = 377/496 (76%), Gaps = 24/496 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 333 VLEEYDFRHDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 393 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFASESGLVVST 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R+REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 453 YSMVANTRNRSHDSQKVMDFLRSREWGFIILDEVHVVPAQMFRRVVTTIAAHAKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 513 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA++L KP IYG+T
Sbjct: 572 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALRLGKPFIYGSTPQQ 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERMKILQNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 743
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI--------------AG 466
L+Y E+ LL +VL +DA GLE + +DAD + K +R+ +G
Sbjct: 744 LAYSSARERRELLQQVLLKNEDAAGLE-IGDDADTNFISKEKRMRLEQERNGGGATYTSG 802
Query: 467 SMSAMSGAQGMVYMEY 482
S++ ++G + M Y+EY
Sbjct: 803 SLAGLAGGEDMAYIEY 818
>gi|409048592|gb|EKM58070.1| hypothetical protein PHACADRAFT_252066 [Phanerochaete carnosa
HHB-10118-sp]
Length = 835
Score = 608 bits (1569), Expect = e-171, Method: Compositional matrix adjust.
Identities = 303/495 (61%), Positives = 368/495 (74%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 312 MLEEYDFRNDTVNANLDIDLKPSTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 371
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS I D QI FT+D KE+F G +G+VV+T
Sbjct: 372 ITAACTIKKSCLVLCTSSVSVMQWRQQFMQWSNITDRQIAVFTADQKEKFAGESGIVVST 431
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K+++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 432 YSMVANTHNRSHESKKMMDFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 491
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 492 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 550
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN++AL YA KL K I+G T V
Sbjct: 551 KRMLLYCMNPKKFQACQFLIKYHE-DRGDKIIVFSDNVYALEAYAKKLGKLYIHGGTGQV 609
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 610 ERMRILQHFQHSPEVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 669
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L + +D
Sbjct: 670 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGMEDMSD 722
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA-------------LHKARRIAG 466
L Y DEQ+ LL VL A + L + + D+A +R G
Sbjct: 723 LVYKTRDEQIELLSSVLMANESEADLGTDVRANEGDLAGTITSKDFGMPGKFPAVQRTTG 782
Query: 467 SMSAMSGAQGMVYME 481
S++A+SG Q M Y+E
Sbjct: 783 SLAALSGGQHMSYVE 797
>gi|393241520|gb|EJD49042.1| DNA repair helicase rad25 [Auricularia delicata TFB-10046 SS5]
Length = 873
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/497 (60%), Positives = 369/497 (74%), Gaps = 25/497 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNP+L+++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 344 MLEEYDFRNDTVNPNLDIDLKPATVIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 403
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T+AVS QW QF WS + D QI FTSD KE+F +G++V+T
Sbjct: 404 ITAACTIKKSCLVLCTSAVSGMQWRQQFLQWSNVTDKQIAVFTSDQKEKFATESGIIVST 463
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K+++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 464 YSMVANTHNRSHESQKMMDFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHAKLGLTAT 523
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL+ E ++
Sbjct: 524 LVREDDKISDLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYLRAE-AR 582
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K LY NP KF+AC+FL+++HE RGDKIIVF+DN+F L +YA KL K I+G T HV
Sbjct: 583 RKTLLYCTNPGKFQACQFLVKYHE-DRGDKIIVFSDNVFTLEQYARKLGKLYIHGGTPHV 641
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 642 ERMRILQHFQHHPNVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 701
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM++STKRQQFLIDQGYSFKVIT L +S D
Sbjct: 702 RR-------NDEGFNAFFYSLVSKDTQEMYFSTKRQQFLIDQGYSFKVITQLDGLESMPD 754
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA---------------LHKARRI 464
L Y DEQ+ LL VL A ++A L L D+A +R
Sbjct: 755 LVYRTRDEQIELLQAVLQANENAGDLGTDLKASEGDLAGTVTSNHFGRPGKAGYRAPKRT 814
Query: 465 AGSMSAMSGAQGMVYME 481
GS++A+SG Q M Y+E
Sbjct: 815 TGSLTALSGGQHMSYVE 831
>gi|449506509|ref|XP_002192901.2| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Taeniopygia guttata]
Length = 782
Score = 608 bits (1568), Expect = e-171, Method: Compositional matrix adjust.
Identities = 303/482 (62%), Positives = 378/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 350 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 469 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 528 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAVRLGKPYIYGPTAQG 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 587 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 647 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 699
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+ +EQ LL KVL A D E + + + +RR AG+MS+MSGA VYM
Sbjct: 700 LSFSTKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSAQVSRR-AGTMSSMSGADDTVYM 758
Query: 481 EY 482
EY
Sbjct: 759 EY 760
>gi|326922956|ref|XP_003207708.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Meleagris gallopavo]
Length = 733
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/482 (62%), Positives = 378/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 241 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 300
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 301 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 359
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +++REWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 360 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 419
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 420 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 478
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 479 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 537
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 538 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 597
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 598 KGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 650
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+ +EQ LL KVL A D E + + ++ +RR G+MS+MSGA VYM
Sbjct: 651 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSVQMSRR-TGTMSSMSGADDAVYM 709
Query: 481 EY 482
EY
Sbjct: 710 EY 711
>gi|170099355|ref|XP_001880896.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644421|gb|EDR08671.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 769
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 302/497 (60%), Positives = 370/497 (74%), Gaps = 25/497 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 239 MLEEYDFRNDTVNANLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 298
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS + D QI FT+D KE+F G++G+VV+T
Sbjct: 299 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTADQKEKFAGDSGIVVST 358
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 359 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAVMFRRVVTTIKAHSKLGLTAT 418
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 419 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 477
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKF+AC+FL+++HE RGDK+IVF+DN++AL YA +L K I+G TS V
Sbjct: 478 KRMLLYCMNPNKFQACQFLVKYHE-GRGDKVIVFSDNVYALEAYAKRLHKLYIHGGTSQV 536
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 537 ERMRILQWFQHSPEVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 596
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQQFLIDQGY+FKVIT L + D
Sbjct: 597 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYAFKVITHLDGLEDLPD 649
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA---------------LHKARRI 464
L Y DEQ+ L+ VL A + L + D+A A R
Sbjct: 650 LVYKTRDEQIELISSVLLANESEADLGSDIRAAEGDLAGTVTSKDFGPAGPSRFPTAHRT 709
Query: 465 AGSMSAMSGAQGMVYME 481
GS++A+SGAQ M Y+E
Sbjct: 710 TGSLTALSGAQHMSYIE 726
>gi|449270402|gb|EMC81080.1| TFIIH basal transcription factor complex helicase XPB subunit,
partial [Columba livia]
Length = 705
Score = 608 bits (1567), Expect = e-171, Method: Compositional matrix adjust.
Identities = 301/482 (62%), Positives = 376/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 213 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 272
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 273 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 331
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 332 YSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 391
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 392 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYIAIK-TK 450
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 451 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 509
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 510 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 569
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 570 K------GTVAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 622
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+ +EQ LL KVL A D E + + + +RR G+MS+MSGA M YM
Sbjct: 623 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSAQVSRR-TGTMSSMSGADDMAYM 681
Query: 481 EY 482
EY
Sbjct: 682 EY 683
>gi|71019971|ref|XP_760216.1| hypothetical protein UM04069.1 [Ustilago maydis 521]
gi|46099785|gb|EAK85018.1| hypothetical protein UM04069.1 [Ustilago maydis 521]
Length = 940
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 307/506 (60%), Positives = 368/506 (72%), Gaps = 34/506 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +N DL ++LKP RPYQEKSL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 410 MLEEYDFRNDQLNADLEIDLKPITHIRPYQEKSLAKMFGNGRARSGIIVLPCGAGKTLVG 469
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS IQD+QI FT+D KE+F G +G+VV+T
Sbjct: 470 ITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGASGIVVST 529
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA GKRS S+K++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 530 YSMVANTGKRSHTSQKMMNFLESREWGFILLDEVHVVPASMFRRVLTKIKAHSKLGLTAT 589
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I +LNFL+GPKLYEANW+DL G IA VQCAEVWCPMT EF+ EYL +E S+
Sbjct: 590 LVREDEKIDELNFLVGPKLYEANWMDLAAKGHIATVQCAEVWCPMTPEFYREYL-REKSR 648
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNPNKF+AC+FLI +HE RGDKIIVF+DN++AL YA KL+KP I+G T+H+
Sbjct: 649 KKMLLYCMNPNKFQACQFLIDYHE-NRGDKIIVFSDNVYALVAYAHKLKKPFIHGGTAHL 707
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 708 ERMRILQNFQHNPLVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 767
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYSTKRQQFLIDQGY+F+VIT L
Sbjct: 768 RR-------NDEGFNAFFYSLVSKDTAEMFYSTKRQQFLIDQGYAFRVITHLVGMTDMPG 820
Query: 421 LSYHRLDEQLALLGKVLSA-------GDDAVGLEQLDEDA------------------DD 455
L Y EQ+ LL VL A G D G E +
Sbjct: 821 LVYKSQAEQIELLQSVLIANESDADLGSDLAGTEFGGVVRRGGTGTGTGTGTSAGALLNG 880
Query: 456 IALHKARRIAGSMSAMSGAQGMVYME 481
+ KA R GS++A+SGAQ M Y+E
Sbjct: 881 STVAKASRTTGSLNALSGAQHMSYIE 906
>gi|441663476|ref|XP_004091680.1| PREDICTED: LOW QUALITY PROTEIN: TFIIH basal transcription factor
complex helicase XPB subunit [Nomascus leucogenys]
Length = 737
Score = 607 bits (1564), Expect = e-171, Method: Compositional matrix adjust.
Identities = 298/482 (61%), Positives = 373/482 (77%), Gaps = 23/482 (4%)
Query: 7 FRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66
+ +D+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVGV+AAC
Sbjct: 252 YTSDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACT 311
Query: 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126
++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++TY+M+
Sbjct: 312 VRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAISTYSMLGH 370
Query: 127 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186
KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTATLVRED+
Sbjct: 371 TTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDD 430
Query: 187 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246
+I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +KK+ LY
Sbjct: 431 KIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TKKRILLY 489
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS ER +IL
Sbjct: 490 TMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQIL 548
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
Q FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK +
Sbjct: 549 QNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV-- 606
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRL 426
EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + DL++
Sbjct: 607 ----AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTK 661
Query: 427 DEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGAQGMVYM 480
+EQ LL KVL+A D LD + + +A +A R G+MS+MSGA VYM
Sbjct: 662 EEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYM 714
Query: 481 EY 482
EY
Sbjct: 715 EY 716
>gi|320583620|gb|EFW97833.1| Component of the holoenzyme form of RNA polymerase transcription
factor TFIIH [Ogataea parapolymorpha DL-1]
Length = 511
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/492 (59%), Positives = 377/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 1 MLEEYDFRNDTQNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 60
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F G+AG+VV+T
Sbjct: 61 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFSGDAGLVVST 120
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +++K+++ + +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 121 YSMVANTRNRSYDAQKVMDFLTSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 180
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 181 LVREDEKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTSEFYQEYL-RESAR 239
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 240 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 298
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 299 ERMNILQNFQYNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 358
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FK+IT L ++ +
Sbjct: 359 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKIITHLHGMENLPN 411
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL +D G+E L ED++++ KA + GS++
Sbjct: 412 LAYSTAKERRELLQEVLLKNEDVAGIE-LGEDSENLVGNGVSKKLKNTSKAVKNQGSLAG 470
Query: 471 MSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 471 LAGGEDMAYVEY 482
>gi|150864721|ref|XP_001383669.2| DNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149385977|gb|ABN65640.2| DNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 838
Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 371/492 (75%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 331 VLEEYDFRNDARNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 390
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS++KE F +G+VV+T
Sbjct: 391 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSENKEMFTSESGLVVST 450
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +R REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 451 YSMVANTRNRSHDSQKVMDFLRGREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 510
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL KE+++
Sbjct: 511 LVREDDKIHDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-KESAR 569
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 570 KRMLLYIMNPTKFQACQFLIHYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 628
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 629 ERMQILSNFQHNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 688
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 689 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLSGMEQLPD 741
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD----------DIALHKARRIAGSMSA 470
L+Y E+ LL +VL +DA GLE + +D D + A R GS++
Sbjct: 742 LAYSSPRERRELLQQVLLKNEDAAGLE-IGDDVDTNFISNDTRMKLENANASRTTGSLAG 800
Query: 471 MSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 801 LAGGEDMAYIEY 812
>gi|363751417|ref|XP_003645925.1| hypothetical protein Ecym_4025 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889560|gb|AET39108.1| hypothetical protein Ecym_4025 [Eremothecium cymbalariae
DBVPG#7215]
Length = 853
Score = 606 bits (1562), Expect = e-170, Method: Compositional matrix adjust.
Identities = 295/491 (60%), Positives = 375/491 (76%), Gaps = 18/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 343 VLEEYDFRNDHRNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 402
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W TIQ + + FTSD+KE F+ +G+VV+T
Sbjct: 403 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSDNKEMFQTESGLVVST 462
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +L+DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 463 YSMVANTRNRSHDSQKVMDFLTGREWGFILLDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 522
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 523 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 581
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 582 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 640
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 641 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 700
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 701 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMETLPN 753
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL---------HKARRIAGSMSAM 471
L+Y E+ LL +VL ++A G+E D+ + + KA + GS++ +
Sbjct: 754 LAYASARERRELLQEVLLKNEEAAGIEIGDDSENFVGRGSNPNKRMKSKAVKGEGSLAGL 813
Query: 472 SGAQGMVYMEY 482
+G + M Y+EY
Sbjct: 814 AGGEDMAYLEY 824
>gi|57529720|ref|NP_001006523.1| TFIIH basal transcription factor complex helicase XPB subunit
[Gallus gallus]
gi|82082180|sp|Q5ZKK7.1|ERCC3_CHICK RecName: Full=TFIIH basal transcription factor complex helicase XPB
subunit; AltName: Full=DNA excision repair protein
ERCC-3
gi|53130814|emb|CAG31736.1| hypothetical protein RCJMB04_10e8 [Gallus gallus]
Length = 788
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 300/482 (62%), Positives = 377/482 (78%), Gaps = 11/482 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ + + ++T
Sbjct: 348 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDK-PIDCSIAIST 406
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E +++REWGL+++DEVH +PA MFR+V+++ ++HCKL LTAT
Sbjct: 407 YSMLGHTTKRSWEAERVMEWLKSREWGLMILDEVHTIPAKMFRRVLTIVQAHCKLELTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 467 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 526 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLGKPYIYGPTAQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 585 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 644
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 645 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 697
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
LS+ +EQ LL KVL A D E + + ++ +RR G+MS+MSGA VYM
Sbjct: 698 LSFSSKEEQQQLLQKVLQASDLDAEEEVVAGEYGSKSVQMSRR-TGTMSSMSGADDAVYM 756
Query: 481 EY 482
EY
Sbjct: 757 EY 758
>gi|367010132|ref|XP_003679567.1| hypothetical protein TDEL_0B02270 [Torulaspora delbrueckii]
gi|359747225|emb|CCE90356.1| hypothetical protein TDEL_0B02270 [Torulaspora delbrueckii]
Length = 842
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 380/492 (77%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 336 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 395
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + + FTSD+KE F+ +G+VV+T
Sbjct: 396 ITAACTIKKSAIVLCTSSVSVMQWRQQFLQWCTLQPENVAVFTSDNKEMFQTESGLVVST 455
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 456 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 515
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 516 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 574
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP I+GAT
Sbjct: 575 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKLGKPFIFGATPQQ 633
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 634 ERMNILQNFQFNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 693
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ +D +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 694 RRNDD-------GFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 746
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ A KA R GS++
Sbjct: 747 LAYASARERRELLQEVLLKNEEAAGIE-IGDDADNSVGRGVNAHKKAKSKAVRGEGSLAG 805
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 806 LAGGEDMAYMEY 817
>gi|444323403|ref|XP_004182342.1| hypothetical protein TBLA_0I01650 [Tetrapisispora blattae CBS 6284]
gi|387515389|emb|CCH62823.1| hypothetical protein TBLA_0I01650 [Tetrapisispora blattae CBS 6284]
Length = 850
Score = 605 bits (1561), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/492 (60%), Positives = 377/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 344 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 403
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 404 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 463
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 464 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSAIAAHAKLGLTAT 523
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 524 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 582
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 583 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 641
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 642 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 701
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 702 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 754
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS++
Sbjct: 755 LAYSSARERRELLQEVLLKNEEAAGIE-IGDDADNSIGRGGNAHKKMRSKAVRGEGSLAG 813
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 814 LAGGEDMAYMEY 825
>gi|366995011|ref|XP_003677269.1| hypothetical protein NCAS_0G00290 [Naumovozyma castellii CBS 4309]
gi|342303138|emb|CCC70916.1| hypothetical protein NCAS_0G00290 [Naumovozyma castellii CBS 4309]
Length = 837
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/490 (60%), Positives = 377/490 (76%), Gaps = 18/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 333 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 393 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPESCAVFTSDNKEMFQTESGLVVST 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 453 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSAIAAHAKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 513 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 572 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMETLPN 743
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADD--------IALHKARRIAGSMSAMS 472
L+Y E+ LL +VL ++A GLE + +DAD+ KA R GS++ ++
Sbjct: 744 LAYASARERRELLQEVLLKNEEAAGLE-VGDDADNTIGRGGNAFKRAKAVRGQGSLAGLA 802
Query: 473 GAQGMVYMEY 482
G + M YMEY
Sbjct: 803 GGEDMAYMEY 812
>gi|50293447|ref|XP_449135.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528448|emb|CAG62105.1| unnamed protein product [Candida glabrata]
Length = 862
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/492 (60%), Positives = 376/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 357 VLEEYDFRNDNRNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 416
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 417 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 476
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 477 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 536
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 537 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 595
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP I+G+T
Sbjct: 596 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKLGKPFIFGSTPQQ 654
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 655 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 714
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 715 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 767
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ A KA R GS++
Sbjct: 768 LAYASARERRELLQEVLLKNEEAAGIE-IGDDADNSIGRGGSLYKKARSKAMRGEGSLAG 826
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 827 LAGGEDMAYMEY 838
>gi|365987532|ref|XP_003670597.1| hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
gi|343769368|emb|CCD25354.1| hypothetical protein NDAI_0F00350 [Naumovozyma dairenensis CBS 421]
Length = 874
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/492 (60%), Positives = 377/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 368 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 427
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 428 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 487
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 488 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSAIAAHAKLGLTAT 547
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 548 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 606
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 607 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 665
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 666 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 725
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 726 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 778
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L+Y E+ LL +VL ++A GLE + +DAD+ KA R GS++
Sbjct: 779 LAYASPRERRELLQEVLLKNEEAAGLE-IGDDADNSIGRGGNLYKRGKSKAVRGEGSLAG 837
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 838 LAGGEDMAYMEY 849
>gi|393217046|gb|EJD02536.1| DNA repair helicase rad25 [Fomitiporia mediterranea MF3/22]
Length = 872
Score = 605 bits (1560), Expect = e-170, Method: Compositional matrix adjust.
Identities = 304/504 (60%), Positives = 369/504 (73%), Gaps = 32/504 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 333 MLEEYDFRNDTVNANLDIDLKPSTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL LAT++VSV QW QF WS + + QI FT+D KERF G++G+VV+T
Sbjct: 393 ITAACTIKKSCLVLATSSVSVMQWKQQFMQWSNVTEKQIAVFTADQKERFAGDSGIVVST 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E ++ REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 453 YSMVANTHNRSHESKKMMEFLQGREWGFILLDEVHVVPAAMFRRVVTTIKAHAKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 513 LVREDDKITDLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQTR 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNK +AC+FLI++HE RGDKIIVF+DN++AL YA KL K I+G TS V
Sbjct: 572 KRMLLYCMNPNKIQACQFLIKYHE-DRGDKIIVFSDNVYALEHYARKLGKLYIHGGTSQV 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERMRVLQHFQHHPKVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGYSFKVIT L S D
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYSFKVITHLDGIQSLPD 743
Query: 421 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIA---------------------- 457
L+Y DEQ+ L+ VL A + DA + D+
Sbjct: 744 LAYRTRDEQIELISSVLLANESDAELGNDVRAGEGDLPGTVTAKDFGGPGQRGGAFGASN 803
Query: 458 LHKARRIAGSMSAMSGAQGMVYME 481
+ A+R GS+ A+SG M Y+E
Sbjct: 804 VPGAKRTTGSLGALSGGAHMSYVE 827
>gi|392564211|gb|EIW57389.1| DNA helicase [Trametes versicolor FP-101664 SS1]
Length = 859
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 303/495 (61%), Positives = 366/495 (73%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L+++LKP R YQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 MLEEYDFRNDTVNANLDIDLKPSTVIRSYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS + D QI FT++SKE+F G +G+VV+T
Sbjct: 397 ITAACTIKKSCLVLCTSSVSVMQWRQQFMQWSNVTDKQIAVFTAESKEKFAGESGIVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 457 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 517 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN+FAL YA KL K I+G T
Sbjct: 576 KRMLLYCMNPKKFQACQFLIKYHE-DRGDKIIVFSDNVFALEAYAKKLGKLYIHGGTGQT 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMRILQWFQHSPEVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L D
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLDDLPS 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA-------------LHKARRIAG 466
L Y DEQ+ LL VL A + L + D+A + +R G
Sbjct: 748 LVYKSRDEQIELLSSVLLANESEADLGTDVRAGEGDLAGTITSKDFGMPTKMPAVQRTTG 807
Query: 467 SMSAMSGAQGMVYME 481
S++A+SGAQ M Y+E
Sbjct: 808 SLTALSGAQHMSYVE 822
>gi|45198798|ref|NP_985827.1| AFR280Wp [Ashbya gossypii ATCC 10895]
gi|44984827|gb|AAS53651.1| AFR280Wp [Ashbya gossypii ATCC 10895]
gi|374109058|gb|AEY97964.1| FAFR280Wp [Ashbya gossypii FDAG1]
Length = 830
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 377/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 324 VLEEYDFRNDNRNPDLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 383
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W TIQ + + FTSD+KE F+ +G+VV+T
Sbjct: 384 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSDNKEMFQTESGLVVST 443
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +L+DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 444 YSMVANTRNRSHDSQKVMDFLTGREWGFILLDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 503
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 504 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 562
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 563 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 621
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + ++TIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 622 ERMNILQNFQYNDQISTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 681
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L +S +
Sbjct: 682 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLNGMESLPN 734
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + ED+++ KA + GS++
Sbjct: 735 LAYASARERRELLQEVLLKNEEAAGIE-IGEDSENFVGRGAGAIKRMKSKAVKGEGSLAG 793
Query: 471 MSGAQGMVYMEY 482
++G + + Y+EY
Sbjct: 794 LAGGEDIAYLEY 805
>gi|410078858|ref|XP_003957010.1| hypothetical protein KAFR_0D02280 [Kazachstania africana CBS 2517]
gi|372463595|emb|CCF57875.1| hypothetical protein KAFR_0D02280 [Kazachstania africana CBS 2517]
Length = 833
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 377/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 327 VLEEYDFRNDHRNPDLGIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 386
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 387 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 446
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 447 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 506
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E+++
Sbjct: 507 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RESAR 565
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 566 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 624
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 625 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 684
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 685 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 737
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ +KA R GS++
Sbjct: 738 LAYSSARERRELLQEVLLKNEEAAGIE-VGDDADNTIGRGNNVNRRFKNKAVRGEGSLAG 796
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 797 LAGGEDMAYMEY 808
>gi|443918514|gb|ELU38961.1| DNA repair helicase RAD25 [Rhizoctonia solani AG-1 IA]
Length = 823
Score = 604 bits (1557), Expect = e-170, Method: Compositional matrix adjust.
Identities = 308/525 (58%), Positives = 377/525 (71%), Gaps = 30/525 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND +N +L+++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 289 VLEEYDFRNDRINANLDIDLKPMTSIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS L LAT+ VSV QW +F WS I D QIC FT+D KE+F G +G+VV+T
Sbjct: 349 ITAACTIKKSTLVLATSGVSVMQWKREFMQWSNITDKQICVFTADQKEKFAGESGIVVST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A RS ES+K+++ + +REWG +L+DEVHVVPA+MFRKVI+ K+H KLGLTAT
Sbjct: 409 YSMIANTTNRSHESKKMMDFLTSREWGFILLDEVHVVPANMFRKVITTIKAHSKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 469 LVREDDKISDLNYMIGPKLYEANWMDLSAKGHIANVQCAEVWCPMTPEFYHEYL-REKSR 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF++C+FLI+FHE RGDKIIVF+DN++AL YA KL KP I G+TS
Sbjct: 528 KRMLLYCMNPRKFQSCQFLIKFHE-GRGDKIIVFSDNVYALEAYAKKLNKPFICGSTSQQ 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L F+ S +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 587 ERMRVLNHFQHSPKVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQQFL+DQGY+FKVIT L D +
Sbjct: 647 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQQFLVDQGYAFKVITHLAGMDEDPE 699
Query: 421 LSYHRLDEQLALLGKVLSAGDDA--VGLEQLDEDADDIALHKAR---------------- 462
L Y EQL L+ VL +D +G + D D +
Sbjct: 700 LVYKSRAEQLELMSAVLLESEDKADLGDKMAKGDLDSVMRRGVGGGRGGRFGGGGGAGPS 759
Query: 463 --RIAGSMSAMSGAQGMVYMEYRYDPWQKQLFKASSQIFFSFQLL 505
R +GS+ A+SGAQ M YME R KQL + Q S +L
Sbjct: 760 VVRQSGSLGALSGAQQMAYME-RSRGANKQLAREDKQKGHSSKLF 803
>gi|443733454|gb|ELU17809.1| hypothetical protein CAPTEDRAFT_153297 [Capitella teleta]
Length = 739
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 301/504 (59%), Positives = 381/504 (75%), Gaps = 17/504 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF+ND++NP++NM+LKP RPYQEKSL KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 251 LLAEYDFKNDSINPNVNMDLKPSTVLRPYQEKSLRKMFGNGRARSGIIVLPCGAGKTLVG 310
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC +KK C+ L T+ V+V+QW QFK+WST D ICRFTSD+K++ G + ++T
Sbjct: 311 VTAACTVKKRCMVLCTSGVAVEQWRSQFKMWSTCDDSLICRFTSDAKDKPMG-CSICIST 369
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++ KRS E+E+++E ++ +EWGL+++DEV +PA MFR+V+S ++HCKLGLTAT
Sbjct: 370 YSMISHTMKRSWEAERVMEWMQQQEWGLMILDEVQFIPAKMFRRVLSSVQAHCKLGLTAT 429
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANWL+L GFIA VQCAEVWCPM+ EF+ EYL + ++
Sbjct: 430 LVREDDKITDLNFLIGPKLYEANWLELQANGFIAKVQCAEVWCPMSPEFYREYLNTK-TR 488
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LYV NPNKFRAC+FLIRFHE +R DKIIVF+DN+FAL YA+KL KP +YG TS
Sbjct: 489 KRMLLYVANPNKFRACQFLIRFHE-RRNDKIIVFSDNVFALKSYAIKLNKPYLYGPTSQS 547
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIF+SKV DNS D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 548 ERIHILQNFQHNPKVNTIFVSKVADNSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 607
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFYSLVS DT EM Y+TKRQ+FL++QGYS+KVIT L D D
Sbjct: 608 K------GAVAEEYNAFFYSLVSQDTMEMHYATKRQRFLVNQGYSYKVITKLAGMDE-ED 660
Query: 421 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVY 479
L + ++Q A+L KVL+A D DA + L+ + +H R GSMS+MSGA VY
Sbjct: 661 LEFSTKEDQAAMLQKVLAATDTDADEEKGLEAGSGKSMVH---RRPGSMSSMSGADDAVY 717
Query: 480 MEYRYDPWQKQLFKASSQIFFSFQ 503
ME++ +K AS +F F+
Sbjct: 718 MEFQA---RKHSNAASHPLFKKFR 738
>gi|390594292|gb|EIN03704.1| DNA helicase [Punctularia strigosozonata HHB-11173 SS5]
Length = 866
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 302/500 (60%), Positives = 368/500 (73%), Gaps = 28/500 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NP+L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 340 MLEEYDFRNDTINPNLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 399
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSC L T++VSV QW QF WS I D QI FT+D KE+F G +G+V++T
Sbjct: 400 ITAACTIKKSCFVLCTSSVSVMQWKQQFMQWSNITDRQIAVFTADQKEKFAGESGIVIST 459
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +++K+++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 460 YSMVANTHNRSHDAKKMMDFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHAKLGLTAT 519
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 520 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 578
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI++HE RGDKIIVF+DN++AL YA KL K I+G T V
Sbjct: 579 KRMLLYCMNPKKFQACQFLIKYHE-DRGDKIIVFSDNVYALEAYAKKLGKLYIHGGTGQV 637
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ S +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 638 ERMRILQYFQHSPAVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 697
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGYSFKVIT L + D
Sbjct: 698 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYSFKVITHLDGLEDQPD 750
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA----------LHKAR------- 462
L Y DEQ+ LL VL A + L + D+A K+R
Sbjct: 751 LVYKSRDEQIELLSSVLLANESEADLGSDIRAGEGDLAGTVTSKDFGVPTKSRAAAAAAP 810
Query: 463 -RIAGSMSAMSGAQGMVYME 481
R +GS++A+SG Q M Y+E
Sbjct: 811 YRTSGSLTALSGGQHMSYIE 830
>gi|402224508|gb|EJU04570.1| DNA repair helicase rad25 [Dacryopinax sp. DJM-731 SS1]
Length = 762
Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust.
Identities = 300/491 (61%), Positives = 369/491 (75%), Gaps = 19/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VN +L+++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 246 VLEEYDFRNDTVNANLDIDLKPITVIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 305
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS L L T+ VSV QW QF WS I D QI FT++ KE+F G AG+VV+T
Sbjct: 306 ITAACTIKKSTLVLCTSTVSVMQWKQQFMQWSNITDRQISVFTAEQKEKFSGAAGIVVST 365
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K+++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 366 YSMVANTRNRSYESQKMMDFLTSREWGFILLDEVHVVPAQMFRRVVTTIKAHAKLGLTAT 425
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED +I DLN++IGPKLYEANW+DL G IANVQCAEVWCPM EF+ EYL +E +
Sbjct: 426 LVREDNKIDDLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMPPEFYREYL-REKPR 484
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
++ LY MNPNKF+AC+FLI +HE +RGDKIIVF+DN+FAL YA KL KP I+GAT+ V
Sbjct: 485 RRMLLYCMNPNKFQACQFLIDYHE-RRGDKIIVFSDNVFALEAYAKKLSKPFIHGATAQV 543
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 544 ERMRVLQNFQHNPVVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 603
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQQFLIDQGY+FKVIT L + +
Sbjct: 604 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYAFKVITQLEGLHTMPN 656
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL----------EQLDEDADDIALHKARRIAGSMSA 470
L Y EQ+ LL VL A + A+ +Q + + ++A+R GS+SA
Sbjct: 657 LVYKTPSEQIELLQSVLIANESALDFSGSDLMNLQGDQAQKARNRAQKYEAKRAVGSLSA 716
Query: 471 MSGAQGMVYME 481
+SGAQ M Y+E
Sbjct: 717 LSGAQHMSYIE 727
>gi|388582732|gb|EIM23036.1| DNA repair helicase rad25 [Wallemia sebi CBS 633.66]
Length = 772
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 299/485 (61%), Positives = 368/485 (75%), Gaps = 13/485 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDF ND NP+L+++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 257 MLEEYDFHNDTRNPNLDIDLKPVTVIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 316
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS L L T++VSV QW QF WS + D QI FT+D KE+F G +G+VV+T
Sbjct: 317 ITAACTIKKSVLVLCTSSVSVMQWKQQFMQWSNVNDSQISVFTADQKEKFGGESGIVVST 376
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K+++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 377 YSMVANTRNRSHESQKMMDFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 436
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL G IANVQCAEVWCPM F+ EYL +E S+
Sbjct: 437 LVREDDKIDDLNFLIGPKLYEANWMDLAAKGHIANVQCAEVWCPMVPCFYREYL-REKSR 495
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP+KF+AC+FLI FHE RGDKIIVF+D +++L +YA KL+KP I+G TS V
Sbjct: 496 KRMLLYSMNPHKFQACQFLIDFHE-DRGDKIIVFSDCVYSLEQYARKLKKPYIHGGTSQV 554
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ ++NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 555 ERMRVLQRFQYDSNVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 614
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVSTDTQEMFYSTKRQ FL+DQGY+FKVIT L + D
Sbjct: 615 RR-------NDEGFNAFFYSLVSTDTQEMFYSTKRQGFLVDQGYAFKVITHLFGIERLPD 667
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA--LHK-ARRIAGSMSAMSGAQG 476
L Y EQ+ LL VL A + A + + DD+A +H +R+ G+ SA++G Q
Sbjct: 668 LVYRSEKEQIELLESVLLANESAADIGSDIKASEDDLAGTIHGVTKRMTGNTSALAGGQA 727
Query: 477 MVYME 481
M Y+E
Sbjct: 728 MSYIE 732
>gi|328697792|ref|XP_001950547.2| PREDICTED: DNA excision repair protein haywire-like [Acyrthosiphon
pisum]
Length = 750
Score = 602 bits (1553), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/494 (59%), Positives = 368/494 (74%), Gaps = 13/494 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF+ND VN D+N++LKP A RPYQEKSL KMFGN RARSGIIVLPCGAGKSLVG
Sbjct: 265 LLVEYDFKNDKVNKDINIDLKPQATLRPYQEKSLRKMFGNSRARSGIIVLPCGAGKSLVG 324
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L +AVSV+QW +QFK+WST D +CRFTSD K++ G GV +TT
Sbjct: 325 VTACCTVRKRALVLCNSAVSVEQWKYQFKMWSTADDSLVCRFTSDVKDKLMG-CGVFITT 383
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ ++ I+ +EWG++++DEVH +PA MFR+V++L +SHCKLGLTAT
Sbjct: 384 YSMITHTQKRSWEAEQTMKWIQEQEWGIMVLDEVHTIPAKMFRRVLTLVQSHCKLGLTAT 443
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L + G+IA VQC+EVWCPM EF+ EYL
Sbjct: 444 LLREDDKIADLNFLIGPKLYEANWLELQQRGYIAKVQCSEVWCPMAPEFYREYLATRTC- 502
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK +VMNPNKFRAC+FLIR+HE QRGDK IVF+DN+FAL EYA+KL KP IYG TS
Sbjct: 503 KKMLFFVMNPNKFRACQFLIRYHE-QRGDKTIVFSDNVFALKEYALKLSKPYIYGPTSQA 561
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+P+ANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 562 ERIQILQNFKLNPKVNTIFVSKVADTSFDLPDANVLIQISSHGGSRRQEAQRLGRILRAK 621
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FLIDQGYS+KV+T L D +
Sbjct: 622 K------TAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLIDQGYSYKVVTKLAGMDEDPE 675
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y ++Q LL KVL+A D E++ + + ++++G MS+MSGA VY
Sbjct: 676 LFYSSREDQGLLLSKVLAANDTDADEERMPYEGTSKSY---KKMSGKMSSMSGADDAVYA 732
Query: 481 EYRYDPWQKQ-LFK 493
E+R + K LFK
Sbjct: 733 EFRRNSGVKHPLFK 746
>gi|367001645|ref|XP_003685557.1| hypothetical protein TPHA_0E00270 [Tetrapisispora phaffii CBS 4417]
gi|357523856|emb|CCE63123.1| hypothetical protein TPHA_0E00270 [Tetrapisispora phaffii CBS 4417]
Length = 856
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/492 (59%), Positives = 374/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 350 VLEEYDFRNDNRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 409
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 410 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 469
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 470 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTAIAAHAKLGLTAT 529
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 530 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 588
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 589 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 647
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 648 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 707
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + +
Sbjct: 708 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMELLPN 760
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L+Y E+ LL +VL ++A GLE + +DAD+ + R GS++
Sbjct: 761 LAYALARERRELLQEVLLKNEEAAGLE-VGDDADNTIGRGGHSHKKGKSRIHRGEGSLAG 819
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 820 LAGGEDMAYMEY 831
>gi|259147110|emb|CAY80363.1| Ssl2p [Saccharomyces cerevisiae EC1118]
Length = 843
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/492 (59%), Positives = 376/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G+IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGYIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQ+M+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQDMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 807 LAGGEDMAYMEY 818
>gi|254586097|ref|XP_002498616.1| ZYRO0G14630p [Zygosaccharomyces rouxii]
gi|238941510|emb|CAR29683.1| ZYRO0G14630p [Zygosaccharomyces rouxii]
Length = 857
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/494 (59%), Positives = 375/494 (75%), Gaps = 22/494 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+M+LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 349 VLEEYDFRNDHRNPDLDMDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 408
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF WST+Q + + FTSD+KE F AG+VV+T
Sbjct: 409 ITAACTIKKSAVVLCTSSVSVMQWRQQFLQWSTLQPENVAVFTSDNKEMFHTEAGLVVST 468
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 469 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 528
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 529 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 587
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+A +FLI++HE +RGDKIIVF+DN++AL EYA+KL KP I+G+T
Sbjct: 588 KRMLLYIMNPTKFQAAQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIFGSTPQQ 646
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 647 ERMNILQNFQFNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 706
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 707 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 759
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR------------RIAGSM 468
L+Y E+ LL +VL ++A G+E + +DAD+ R GS+
Sbjct: 760 LTYASARERRELLQEVLLKNEEAAGIE-IGDDADNTIGRGGNAHKKAKMKAKAVRGEGSL 818
Query: 469 SAMSGAQGMVYMEY 482
+ ++G + M YMEY
Sbjct: 819 AGLAGGEDMAYMEY 832
>gi|172327|gb|AAA34942.1| DNA helicase [Saccharomyces cerevisiae]
Length = 843
Score = 602 bits (1552), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 375/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 807 LAGGEDMAYMEY 818
>gi|190406354|gb|EDV09621.1| DNA repair helicase RAD25 [Saccharomyces cerevisiae RM11-1a]
gi|323354539|gb|EGA86375.1| Ssl2p [Saccharomyces cerevisiae VL3]
Length = 843
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 375/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 807 LAGGEDMAYMEY 818
>gi|6322048|ref|NP_012123.1| Ssl2p [Saccharomyces cerevisiae S288c]
gi|267033|sp|Q00578.1|RAD25_YEAST RecName: Full=DNA repair helicase RAD25; AltName: Full=General
transcription and DNA repair factor IIH subunit RAD25;
Short=TFIIH subunit RAD25; AltName: Full=Suppressor of
stem-loop mutation 2
gi|172724|gb|AAA35102.1| encodes human ERCC-3 homologue [Saccharomyces cerevisiae]
gi|557780|emb|CAA86135.1| DNA repair helicase [Saccharomyces cerevisiae]
gi|51013217|gb|AAT92902.1| YIL143C [Saccharomyces cerevisiae]
gi|285812511|tpg|DAA08410.1| TPA: Ssl2p [Saccharomyces cerevisiae S288c]
Length = 843
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 375/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 807 LAGGEDMAYMEY 818
>gi|327282808|ref|XP_003226134.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Anolis carolinensis]
Length = 781
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 301/489 (61%), Positives = 377/489 (77%), Gaps = 23/489 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 289 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 349 VTAASTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 407
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+EK++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 408 YSMLGHTTKRSWEAEKVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 467
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 468 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 526
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 527 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAVRLGKPYIYGPTAQG 585
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 586 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 645
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 646 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 698
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L + +EQ LL KVL A D +D + + +A + R G+MS+MSGA
Sbjct: 699 LMFSSKEEQQQLLQKVLQASD-------MDAEEEVVAGEYGSKSSQVSRHYGTMSSMSGA 751
Query: 475 QGMVYMEYR 483
VYMEY+
Sbjct: 752 DDTVYMEYQ 760
>gi|151943023|gb|EDN61358.1| DNA helicase [Saccharomyces cerevisiae YJM789]
gi|256270224|gb|EEU05444.1| Ssl2p [Saccharomyces cerevisiae JAY291]
gi|349578814|dbj|GAA23978.1| K7_Ssl2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298773|gb|EIW09869.1| Ssl2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 843
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 375/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 806
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 807 LAGGEDMAYMEY 818
>gi|50309063|ref|XP_454537.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643672|emb|CAG99624.1| KLLA0E13025p [Kluyveromyces lactis]
Length = 858
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/493 (59%), Positives = 374/493 (75%), Gaps = 21/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 351 VLEEYDFRNDRRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 410
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + + FTSD+KE F+ +G+VV+T
Sbjct: 411 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENVAVFTSDNKEMFQTESGLVVST 470
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 471 YSMVANTRNRSYDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 530
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 531 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 589
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 590 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 648
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 649 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 708
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 709 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPN 761
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-----------KARRIAGSMS 469
L+Y E+ LL +VL ++A G+E ED D KA + GS++
Sbjct: 762 LAYSSARERRELLQEVLLKNEEAAGIEA-GEDNDSYIWKNGGNKRPRNKSKAVKSEGSLA 820
Query: 470 AMSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 821 GLAGGEDMAYLEY 833
>gi|401838864|gb|EJT42288.1| SSL2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 872
Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 293/491 (59%), Positives = 374/491 (76%), Gaps = 18/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 366 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 425
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 426 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 485
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 486 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 545
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 546 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 604
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+TS
Sbjct: 605 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTSQQ 663
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 664 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 723
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 724 RR-------NDQGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 776
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL---------HKARRIAGSMSAM 471
L+Y E+ LL +VL ++A G+E D+ + + KA R GS++ +
Sbjct: 777 LAYASPRERRELLQEVLLKNEEAAGIEVGDDAENSVGRGSNGHKRFKSKAVRGEGSLAGL 836
Query: 472 SGAQGMVYMEY 482
+G + M YMEY
Sbjct: 837 AGGEDMAYMEY 847
>gi|343425159|emb|CBQ68696.1| probable SSL2-DNA helicase [Sporisorium reilianum SRZ2]
Length = 951
Score = 601 bits (1550), Expect = e-169, Method: Compositional matrix adjust.
Identities = 306/508 (60%), Positives = 369/508 (72%), Gaps = 36/508 (7%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +N DL ++LKP RPYQEKSL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 420 MLEEYDFRNDQLNADLEIDLKPITHIRPYQEKSLAKMFGNGRARSGIIVLPCGAGKTLVG 479
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS IQD+QI FT+D KE+F G +G+VV+T
Sbjct: 480 ITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNIQDNQISVFTADQKEKFSGASGIVVST 539
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA GKRS S+K++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 540 YSMVANTGKRSHTSQKMMNFLESREWGFILLDEVHVVPASMFRRVLTKIKAHSKLGLTAT 599
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I +LNFL+GPKLYEANW+DL G IA VQCAEVWCPMT EF+ EYL +E S+
Sbjct: 600 LVREDEKIDELNFLVGPKLYEANWMDLAAKGHIATVQCAEVWCPMTPEFYREYL-REKSR 658
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNPNKF+AC+FLI +HE RGDKIIVF+DN++AL YA KL+KP I+G T+H+
Sbjct: 659 KKMLLYCMNPNKFQACQFLIDYHE-NRGDKIIVFSDNVYALEAYAFKLKKPFIHGGTAHL 717
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 718 ERMRILQNFQHNPMVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 777
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYSTKRQQFLIDQGY+F+VIT L
Sbjct: 778 RR-------NDEGFNAFFYSLVSKDTAEMFYSTKRQQFLIDQGYAFRVITHLVGMQDMPG 830
Query: 421 LSYHRLDEQLALLGKVLSAGD-DA--------------------------VGLEQLDEDA 453
L Y EQ+ LL VL A + DA G
Sbjct: 831 LVYKSQAEQIELLQSVLIANESDADLGSDLGGGGGGGGGGWGGGGGGGGRGGGGGSGSGL 890
Query: 454 DDIALHKARRIAGSMSAMSGAQGMVYME 481
+ ++ KA R GS++A+SGAQ M Y+E
Sbjct: 891 NGSSVAKASRTTGSLNALSGAQHMSYIE 918
>gi|365765060|gb|EHN06574.1| Ssl2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 759
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 296/492 (60%), Positives = 375/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 253 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 312
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 313 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 372
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 373 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 432
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 433 LVREDDKIGDLNFLIGPKLYEANWMELSQKGXIANVQCAEVWCPMTAEFYQEYL-RETAR 491
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 492 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 550
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 551 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 610
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 611 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 663
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS+S
Sbjct: 664 LAYASPRERRELLQEVLLKNEEAAGIE-VGDDADNSVGRGSNGHKRFKSKAVRGEGSLSG 722
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 723 LAGGEDMAYMEY 734
>gi|387019089|gb|AFJ51662.1| TFIIH basal transcription factor complex helicase XPB subunit-like
[Crotalus adamanteus]
Length = 779
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 301/489 (61%), Positives = 381/489 (77%), Gaps = 23/489 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 287 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 346
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 347 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 405
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++++EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 406 YSMLGHTTKRSWEAERVMEWLKSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 465
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 466 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 524
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG T+
Sbjct: 525 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAVRLGKPYIYGPTAQG 583
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 584 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 643
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 644 KGM------IAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 696
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH---KARRIA---GSMSAMSGA 474
L + ++Q LL KVL A D LD + + +A K+ +I+ G+MS+MSGA
Sbjct: 697 LMFSSKEDQQQLLQKVLQASD-------LDAEEEVVAGEYGSKSSQISRHYGTMSSMSGA 749
Query: 475 QGMVYMEYR 483
VYMEY+
Sbjct: 750 DDTVYMEYQ 758
>gi|156845686|ref|XP_001645733.1| hypothetical protein Kpol_1043p66 [Vanderwaltozyma polyspora DSM
70294]
gi|156116400|gb|EDO17875.1| hypothetical protein Kpol_1043p66 [Vanderwaltozyma polyspora DSM
70294]
Length = 856
Score = 600 bits (1547), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/491 (59%), Positives = 374/491 (76%), Gaps = 18/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 350 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 409
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 410 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 469
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 470 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVTAIAAHAKLGLTAT 529
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT +F+ EYL +EN++
Sbjct: 530 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTVDFYQEYL-RENAR 588
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+KL KP IYG+T
Sbjct: 589 KRMLLYIMNPTKFQACQFLIQYHE-KRGDKIIVFSDNVYALQEYALKLGKPFIYGSTPQQ 647
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 648 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 707
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L + +
Sbjct: 708 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMELLPN 760
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL---------HKARRIAGSMSAM 471
L+Y E+ LL +VL ++A G+E D+ + I KA R GS++ +
Sbjct: 761 LAYASGRERRELLQEVLLKNEEAAGIEIGDDAENTIGRGGNAHKRFKSKAVRGEGSLAGL 820
Query: 472 SGAQGMVYMEY 482
+G + M YMEY
Sbjct: 821 AGGEDMAYMEY 831
>gi|403218334|emb|CCK72825.1| hypothetical protein KNAG_0L02070 [Kazachstania naganishii CBS
8797]
Length = 851
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 299/491 (60%), Positives = 375/491 (76%), Gaps = 20/491 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 345 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 404
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T+AVSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 405 ITAACTIKKSVIVLCTSAVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 464
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 465 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSAIAAHAKLGLTAT 524
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I+DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +EN++
Sbjct: 525 LVREDDKISDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RENAR 583
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL +YA+KL KP IYG+T
Sbjct: 584 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQQYALKLGKPFIYGSTPQQ 642
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 643 ERMNILQNFQFNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 702
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 703 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQAFLVDQGYAFKVITHLHGMENLLN 755
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI------ALH----KARRIAGSMSA 470
L+Y E+ LL +VL ++A LE+ D DAD+ AL KA R SM+
Sbjct: 756 LAYASARERRELLQEVLLKNEEAAALEEGD-DADNFVGRSGGALKRFKSKAVRGQASMAG 814
Query: 471 MSGAQGMVYME 481
++G + M Y E
Sbjct: 815 LAGGEDMAYAE 825
>gi|66519335|ref|XP_624125.1| PREDICTED: DNA excision repair protein haywire [Apis mellifera]
Length = 795
Score = 600 bits (1546), Expect = e-169, Method: Compositional matrix adjust.
Identities = 295/489 (60%), Positives = 367/489 (75%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLGCKMS- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L + D
Sbjct: 664 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMEEEPD 717
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI---AGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R I AG+M++MSGA
Sbjct: 718 LMYTSREEQGHLLQQVLSASD-------MDADEERIPGEGPRPIVRKAGNMTSMSGADDA 770
Query: 478 VYMEYRYDP 486
VY EY+ P
Sbjct: 771 VYYEYKKAP 779
>gi|260821664|ref|XP_002606152.1| hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae]
gi|229291491|gb|EEN62162.1| hypothetical protein BRAFLDRAFT_126483 [Branchiostoma floridae]
Length = 798
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 292/486 (60%), Positives = 366/486 (75%), Gaps = 12/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+ ++LKP+ RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 311 LLAEYDFRNDTRNPDIPIDLKPNTILRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K C+ L T+AVSV+QW QFKLW+ I D ICRFT+D+K++ G V ++T
Sbjct: 371 VTAACTVRKRCIVLCTSAVSVEQWKSQFKLWANIDDSTICRFTADAKDKPIG-CNVAIST 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A KRS ESEK++E ++++EWGL+L+DEVH +PA FR+V+ + ++HCKLGLTAT
Sbjct: 430 YSMIAHTTKRSYESEKVMEWLQSQEWGLMLLDEVHTIPAKQFRRVLMVIQAHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L FIA VQCAEVWCPMT EF+ EYL + +K
Sbjct: 490 LVREDDKIADLNFLIGPKLYEANWMELQNNNFIARVQCAEVWCPMTPEFYREYLAIQ-TK 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FL+RFHE +R DK+IVF+DN+FAL EYA ++ KP IYG TS
Sbjct: 549 KRTLLYTMNPNKFRACQFLVRFHE-RRNDKVIVFSDNVFALKEYAKRMGKPFIYGPTSQG 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +LQ F+ + +NTIF+SKVGD S D+PEANV+IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 608 ERMHVLQNFQHNPKVNTIFISKVGDTSFDLPEANVLIQVSSHGGSRRQEAQRLGRILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ FLI+QGYSFKVIT L D D
Sbjct: 668 ------KGSVAEEYNAFFYTLVSQDTMEMTYSQKRQSFLINQGYSFKVITKLAGMDE-ED 720
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ EQ LL +VL+A D E + ++ + R GSM++MSGA +YM
Sbjct: 721 LAFSNKKEQRELLQRVLAASDADAEEEVVPGESKGSG--QVTRKVGSMASMSGADDTIYM 778
Query: 481 EYRYDP 486
EY+ P
Sbjct: 779 EYKTGP 784
>gi|401625330|gb|EJS43343.1| ssl2p [Saccharomyces arboricola H-6]
Length = 843
Score = 599 bits (1545), Expect = e-169, Method: Compositional matrix adjust.
Identities = 294/492 (59%), Positives = 375/492 (76%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 337 VLEEYDFRNDHRNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF W T+Q + FTSD+KE F+ +G+VV+T
Sbjct: 397 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWCTLQPENCAVFTSDNKEMFQTESGLVVST 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +++DEVHVVPA MFR+V+S +H KLGLTAT
Sbjct: 457 YSMVANTRNRSHDSQKVMDFLTGREWGFIILDEVHVVPAAMFRRVVSTIAAHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L + G IANVQCAEVWCPMT EF+ EYL +E ++
Sbjct: 517 LVREDDKIGDLNFLIGPKLYEANWMELSQKGHIANVQCAEVWCPMTAEFYQEYL-RETAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI++HE +RGDKIIVF+DN++AL EYA+K+ KP IYG+T
Sbjct: 576 KRMLLYIMNPTKFQACQFLIQYHE-RRGDKIIVFSDNVYALQEYALKMGKPFIYGSTPQQ 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMNILQNFQYNDQINTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ +
Sbjct: 695 RR-------NDQGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENIPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMSA 470
L+Y E+ LL +VL ++A G+E + +DAD+ KA R GS++
Sbjct: 748 LAYASPRERRELLQEVLLKNEEAAGIE-MGDDADNSVGRGPNGHKRFKSKAVRGEGSLAG 806
Query: 471 MSGAQGMVYMEY 482
++G + M YMEY
Sbjct: 807 LAGGEDMAYMEY 818
>gi|380015695|ref|XP_003691833.1| PREDICTED: DNA excision repair protein haywire-like isoform 2 [Apis
florea]
Length = 800
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/489 (60%), Positives = 367/489 (75%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 312 LLAEYDFRNDTINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 371
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 372 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 430
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 431 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 490
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 491 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLGCKMS- 549
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 550 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 608
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 609 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 668
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L + D
Sbjct: 669 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMEEEPD 722
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R R AG+M++MSGA
Sbjct: 723 LMYTSREEQGHLLQQVLSASD-------MDADEERIPGEGPRPIVRKAGNMTSMSGADDA 775
Query: 478 VYMEYRYDP 486
VY EY+ P
Sbjct: 776 VYYEYKKAP 784
>gi|307201000|gb|EFN80971.1| TFIIH basal transcription factor complex helicase XPB subunit
[Harpegnathos saltator]
Length = 737
Score = 599 bits (1545), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/489 (60%), Positives = 366/489 (74%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 249 LLAEYDFRNDSVNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 308
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 309 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 367
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 368 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 427
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 428 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLACKMS- 486
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 487 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQN 545
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 546 ERIQILQNFKFNMKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 605
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L D D
Sbjct: 606 K------GAVAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPD 659
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
L Y +EQ LL +VL+A D D D + I R R G+M++MSGA
Sbjct: 660 LMYANREEQGQLLQQVLTASD-------TDADEEKIPGEGPRPIVRKTGTMASMSGADDA 712
Query: 478 VYMEYRYDP 486
+Y EY+ P
Sbjct: 713 IYYEYKKAP 721
>gi|380015693|ref|XP_003691832.1| PREDICTED: DNA excision repair protein haywire-like isoform 1 [Apis
florea]
Length = 795
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/489 (60%), Positives = 367/489 (75%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLGCKMS- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L + D
Sbjct: 664 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMEEEPD 717
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R R AG+M++MSGA
Sbjct: 718 LMYTSREEQGHLLQQVLSASD-------MDADEERIPGEGPRPIVRKAGNMTSMSGADDA 770
Query: 478 VYMEYRYDP 486
VY EY+ P
Sbjct: 771 VYYEYKKAP 779
>gi|307169923|gb|EFN62432.1| DNA excision repair protein haywire [Camponotus floridanus]
Length = 805
Score = 599 bits (1544), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/486 (60%), Positives = 365/486 (75%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 317 LLAEYDFRNDSVNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 376
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++F G G+++TT
Sbjct: 377 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKFMG-CGILITT 435
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS ++E + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 436 YSMITHTQKRSWDAENTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 495
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 496 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLGCKMS- 554
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG T
Sbjct: 555 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAVKMNKPYIYGPTIQS 613
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 614 ERIHILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 673
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L D D
Sbjct: 674 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPD 727
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VL+A D E++ + + K AG+M++MSGA VY
Sbjct: 728 LMYGNREEQGQLLQQVLTASDTDADEERIPNEGPRPIVRK----AGTMTSMSGADDAVYY 783
Query: 481 EYRYDP 486
EY+ P
Sbjct: 784 EYKKAP 789
>gi|427792675|gb|JAA61789.1| Putative rna polymer, partial [Rhipicephalus pulchellus]
Length = 781
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 289/487 (59%), Positives = 371/487 (76%), Gaps = 13/487 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF+ND VNPD++++LKP A RPYQEKSL KMFGNGR RSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFKNDTVNPDIHVDLKPSAILRPYQEKSLRKMFGNGRGRSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K CL L + VSV+QW QFK+WST D ICRFTS++K++ G G+ +TT
Sbjct: 348 VTACCTVRKRCLVLCNSGVSVEQWKAQFKMWSTADDSVICRFTSEAKDKPMG-CGICITT 406
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ +RS E+E+++ ++ +EWGL+L+DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 407 YSMITHTQRRSWEAEQVMAWLKEQEWGLMLLDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANWL+L G+IA VQCAEVWCPMT EF+ EYL+ +
Sbjct: 467 LVREDDKIQDLNFLIGPKLYEANWLELQNNGYIAKVQCAEVWCPMTPEFYREYLQA-RAC 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L+VMNPNKFRAC+FLI++HE +R DKIIVF+DN+FAL YA+K+ +P IYG TS
Sbjct: 526 KKMLLFVMNPNKFRACQFLIKYHE-RRSDKIIVFSDNVFALKHYAIKMNRPYIYGPTSQQ 584
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQ+S+H GSRRQEAQRLGRILRAK
Sbjct: 585 ERMQILQNFKYNPKVNTIFVSKVADTSFDLPEANVLIQVSAHGGSRRQEAQRLGRILRAK 644
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFYSLVS DT EM YS KRQ+FL++QGYS+KVIT + D +
Sbjct: 645 K------GAVAEEYNAFFYSLVSEDTMEMHYSRKRQRFLVNQGYSYKVITKMEGMDE-EE 697
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA--LHKARRIAGSMSAMSGAQGMV 478
L+Y +EQ +LL +VL+A D E++ + + +RR AG+MS+MSGA V
Sbjct: 698 LAYRTKEEQTSLLQQVLAANDADAEEERVAGETGPTGHRIQMSRR-AGNMSSMSGADSAV 756
Query: 479 YMEYRYD 485
Y+EYR D
Sbjct: 757 YLEYRTD 763
>gi|350412751|ref|XP_003489749.1| PREDICTED: DNA excision repair protein haywire-like isoform 2
[Bombus impatiens]
Length = 804
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/489 (60%), Positives = 367/489 (75%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 316 LLAEYDFRNDTVNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 375
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 376 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 434
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 435 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 494
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL + +
Sbjct: 495 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLGCKMT- 553
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 554 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 612
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 613 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 672
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L + D
Sbjct: 673 K------GAIAEEYNAFFYTLVSLDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMEEEPD 726
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI---AGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R I AG+M++MSGA
Sbjct: 727 LMYTSREEQGHLLQQVLSASD-------IDADEERIPGEGPRPIVRKAGNMTSMSGADDA 779
Query: 478 VYMEYRYDP 486
VY EY+ P
Sbjct: 780 VYYEYKKAP 788
>gi|340720531|ref|XP_003398689.1| PREDICTED: DNA excision repair protein haywire-like [Bombus
terrestris]
Length = 795
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/489 (60%), Positives = 367/489 (75%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTVNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL + +
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLGCKMT- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L + D
Sbjct: 664 K------GAIAEEYNAFFYTLVSLDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMEEEPD 717
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R R AG+M++MSGA
Sbjct: 718 LMYTSREEQGHLLQQVLSASD-------IDADEERIPGEGPRPIVRKAGNMTSMSGADDA 770
Query: 478 VYMEYRYDP 486
VY EY+ P
Sbjct: 771 VYYEYKKAP 779
>gi|383849852|ref|XP_003700549.1| PREDICTED: DNA excision repair protein haywire-like [Megachile
rotundata]
Length = 788
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 295/486 (60%), Positives = 367/486 (75%), Gaps = 19/486 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 306 LLAEYDFRNDSVNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 365
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G +++TT
Sbjct: 366 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CEILITT 424
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++++EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 425 YSMITHTQKRSWEAEQTMRWLQDQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 484
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 485 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLGCKMS- 543
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 544 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 602
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 603 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 662
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L D D
Sbjct: 663 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPD 716
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R R AG+M++MSGA
Sbjct: 717 LMYTSREEQGHLLQQVLSASD-------MDADEERIPGEGPRPIIRKAGNMTSMSGADDA 769
Query: 478 VYMEYR 483
VY EY+
Sbjct: 770 VYSEYK 775
>gi|350412749|ref|XP_003489748.1| PREDICTED: DNA excision repair protein haywire-like isoform 1
[Bombus impatiens]
Length = 795
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 294/489 (60%), Positives = 367/489 (75%), Gaps = 19/489 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTVNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL + +
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLGCKMT- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFR C++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKLLLYVMNPNKFRCCQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L + D
Sbjct: 664 K------GAIAEEYNAFFYTLVSLDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMEEEPD 717
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI---AGSMSAMSGAQGM 477
L Y +EQ LL +VLSA D +D D + I R I AG+M++MSGA
Sbjct: 718 LMYTSREEQGHLLQQVLSASD-------IDADEERIPGEGPRPIVRKAGNMTSMSGADDA 770
Query: 478 VYMEYRYDP 486
VY EY+ P
Sbjct: 771 VYYEYKKAP 779
>gi|50546603|ref|XP_500771.1| YALI0B11726p [Yarrowia lipolytica]
gi|49646637|emb|CAG83021.1| YALI0B11726p [Yarrowia lipolytica CLIB122]
Length = 827
Score = 597 bits (1539), Expect = e-168, Method: Compositional matrix adjust.
Identities = 302/511 (59%), Positives = 383/511 (74%), Gaps = 18/511 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ NPDL+++LK Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 323 VLEEYDFRNDHGNPDLDIDLKSSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 382
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ + + FTS+SKE+F G+AG+VV+T
Sbjct: 383 ITAACTIRKSVIVLCTSSVSVMQWRQQFLQWCTIQPENVAVFTSESKEKFSGDAGLVVST 442
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ +++REWG +++DEVHVVPA MFRKV++ +H KLGLTAT
Sbjct: 443 YSMVANTRNRSHDSQKMMDFLQSREWGFIILDEVHVVPAAMFRKVVTNIAAHAKLGLTAT 502
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IANVQCAEVWCPMT EF+ EYL KEN++
Sbjct: 503 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIANVQCAEVWCPMTSEFYQEYL-KENAR 561
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP+KF+A +FLI +HE +RGDKIIVF+DN+ AL YA+KL K I+G T
Sbjct: 562 KRMLLYIMNPSKFQAAQFLINYHE-KRGDKIIVFSDNVHALKAYALKLGKFFIFGGTPQQ 620
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KIL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 621 ERMKILKNFQYNDQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 680
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FKVIT L ++ D
Sbjct: 681 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKVITHLHGMENLPD 733
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-------KARRIAGSMSAMSG 473
L+Y E+ LL +VL +DA LE+ D +AD A+R GS+++++G
Sbjct: 734 LAYASARERRELLQEVLLQNEDAATLEEGD-NADSFVGRGSSNKRGSAKRTTGSLASLAG 792
Query: 474 AQGMVYMEYRYDPWQKQLFKASSQIFFSFQL 504
+ M Y+E + K L K S Q F +L
Sbjct: 793 GEDMAYIETNKN-RNKDLRKPSKQSAFVKKL 822
>gi|348671252|gb|EGZ11073.1| hypothetical protein PHYSODRAFT_563851 [Phytophthora sojae]
Length = 818
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 300/500 (60%), Positives = 373/500 (74%), Gaps = 20/500 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND PDL M+LKP + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+L G
Sbjct: 319 LMEEYDFRNDKTIPDLEMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTG 378
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA IKKSCLCL T+AVSV+QW QFK+W+ I + +I RFTS +K+ ++GV+VTT
Sbjct: 379 VTAASTIKKSCLCLCTSAVSVEQWTAQFKMWTNIPEKKIARFTSVAKDYIDPDSGVIVTT 438
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+R+ SE++++ I+ REWG +L+DEVHVVPA MFRKVI HCKLGLTAT
Sbjct: 439 YTMVAFGGRRARASEEVMQLIQGREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTAT 498
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED+ I DLNFLIGPKLYEANW+DL + GF+ANV C EVWCPMT EF+ EYL++ S
Sbjct: 499 LVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGEFYREYLRETKSA 558
Query: 241 KKQA-LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+A LYV NPNKF A EFLI++HE +RGDKI++F+D++FAL YA KL K IYG T
Sbjct: 559 RKRALLYVANPNKFTAAEFLIQYHE-ERGDKILLFSDDVFALRLYATKLNKGYIYGGTGE 617
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++LQ+F+ S +N I +SKVGD SID+PEANVIIQ+SSH GSRRQEAQRLGRILR
Sbjct: 618 RERMRLLQSFRSSPLVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRP 677
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K GG +NAFFY+L+STDT EMFYS KRQQ+L+DQGY+FKV+T L P S
Sbjct: 678 KAN----ATGG---FNAFFYTLISTDTHEMFYSNKRQQYLVDQGYTFKVVTDLFEPGSFQ 730
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQL-----DEDADDIAL----HKARRIAGSMSA 470
+ + R ++Q ALL +VLSA ++ ++ DED + L K +++A S+ A
Sbjct: 731 GV-FTRKEDQRALLNEVLSADVESAAKDENAAIRDDEDLSRLELSGHGRKKKKLA-SLGA 788
Query: 471 MSGAQGMVYMEYRYDPWQKQ 490
+SGA G YMEY KQ
Sbjct: 789 LSGADGTKYMEYSAGHGAKQ 808
>gi|332022982|gb|EGI63247.1| DNA excision repair protein haywire [Acromyrmex echinatior]
Length = 793
Score = 597 bits (1538), Expect = e-168, Method: Compositional matrix adjust.
Identities = 290/486 (59%), Positives = 365/486 (75%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 305 LLAEYDFRNDSINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 364
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS+ K++ G G+++TT
Sbjct: 365 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEVKDKPMG-CGILITT 423
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 424 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 483
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 484 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTSEFYKEYLVCKMS- 542
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K LYVMNPNKFR C++LI++HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 543 RKLLLYVMNPNKFRCCQYLIQYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 601
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 602 ERIQILQNFKFNMKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 661
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGY++KVIT L D D
Sbjct: 662 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYAYKVITKLAGMDEEPD 715
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y DEQ LL +VL+A D E++ + + K AG+M ++SGA VY
Sbjct: 716 LMYGNRDEQGQLLQQVLTASDTDADEERIPGEGSKPIIRK----AGTMMSISGADDTVYY 771
Query: 481 EYRYDP 486
EY+ P
Sbjct: 772 EYKKAP 777
>gi|241779174|ref|XP_002399857.1| rad25/xp-B DNA repair helicase, putative [Ixodes scapularis]
gi|215508536|gb|EEC17990.1| rad25/xp-B DNA repair helicase, putative [Ixodes scapularis]
Length = 782
Score = 596 bits (1537), Expect = e-168, Method: Compositional matrix adjust.
Identities = 291/484 (60%), Positives = 367/484 (75%), Gaps = 11/484 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF+ND VNPD++++LKP A RPYQEKSL KMFGNGR RSG+IVLPCGAGKSLVG
Sbjct: 290 LLAEYDFKNDTVNPDIHVDLKPSAILRPYQEKSLRKMFGNGRGRSGVIVLPCGAGKSLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K CL L + VSV+QW QFK+WST D ICRFTS++K++ G G+ +TT
Sbjct: 350 VTACCTVRKRCLVLCNSGVSVEQWKAQFKMWSTADDSVICRFTSEAKDKPMG-CGICITT 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ +RS E+E+++ ++ +EWGL+L+DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 409 YSMITHTQRRSWEAEQVMSWLKEQEWGLMLLDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANWL+L G+IA VQCAEVWCPMT EF+ EYL S
Sbjct: 469 LVREDDKIQDLNFLIGPKLYEANWLELQNHGYIAKVQCAEVWCPMTPEFYREYLSA-RSC 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L+VMNPNKFRAC+FL++FHE +R DKIIVF+DN+FAL YA+K+ +P IYG TS
Sbjct: 528 KKLLLFVMNPNKFRACQFLVKFHE-RRNDKIIVFSDNVFALKHYAIKMNRPYIYGPTSQQ 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQ+S+H GSRRQEAQRLGRILRAK
Sbjct: 587 ERMQILQNFKYNPKVNTIFVSKVADTSFDLPEANVLIQVSAHGGSRRQEAQRLGRILRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DT EM YS KRQ+FL++QGYS+KVIT + D D
Sbjct: 647 K------SAIAEEYNAFFYSLVSEDTMEMHYSRKRQRFLVNQGYSYKVITKMEGMDE-ED 699
Query: 421 LSYHRLDEQLALLGKVLSAGD-DAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVY 479
L+Y +EQ LL +VL+A D DA E + + R AG+MS+MSGA VY
Sbjct: 700 LAYRTKEEQTNLLQQVLAANDADAEEERVAGETSTAGQRFQMSRRAGNMSSMSGADSAVY 759
Query: 480 MEYR 483
+EYR
Sbjct: 760 LEYR 763
>gi|430814591|emb|CCJ28199.1| unnamed protein product [Pneumocystis jirovecii]
Length = 801
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 293/494 (59%), Positives = 370/494 (74%), Gaps = 21/494 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND NPDL ++LKP Q R YQEKSLSKMFGNGRARSGIIVLPCG GK+LVG
Sbjct: 289 MLEEYDFRNDTSNPDLEIDLKPSTQIRSYQEKSLSKMFGNGRARSGIIVLPCGTGKTLVG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS L L T++VSV QW QF WS I+ D I FTSD+KE+F+G +GV+++T
Sbjct: 349 ITAACTIKKSVLVLCTSSVSVIQWKQQFLQWSNIKSDDIAVFTSDNKEKFKGESGVIIST 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A RS +S+KI++ + +REWG LL+DEVHVVPA MFR+VI+ +H KLGLTAT
Sbjct: 409 YSMIANTRNRSHDSQKIMDFLTSREWGFLLLDEVHVVPAIMFRRVITTVAAHAKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANWLDL + G IANVQCAEVWCPMT EF++EYL E S+
Sbjct: 469 LVREDDKIDDLNFLIGPKLYEANWLDLAQKGHIANVQCAEVWCPMTTEFYNEYL-NETSR 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNPNKF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL+K IYG TS
Sbjct: 528 KRMLLYIMNPNKFQACQFLIDYHE-KRGDKIIVFSDNVYALRAYALKLQKYFIYGGTSQH 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KIL+ F+ + + TIFLSK+GD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 587 ERMKILENFRYNDMVKTIFLSKIGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +NAFFYSL+S DT E++YS KRQ FL+DQGY+FKVIT L ++ +
Sbjct: 647 KR-------NDQGFNAFFYSLISKDTMEVYYSVKRQAFLVDQGYAFKVITHLKGIENVPN 699
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD--DIALHKA----------RRIAGSM 468
L++ EQ LL +VL +DA +++ DE + D + K+ +R G++
Sbjct: 700 LAFSTPAEQRELLQEVLLQNEDAADIDKSDERENYYDNFMKKSKKELYNTTKVKRSIGNL 759
Query: 469 SAMSGAQGMVYMEY 482
S +SG Y+EY
Sbjct: 760 STLSGGNDFAYIEY 773
>gi|452823742|gb|EME30750.1| DNA excision repair protein ERCC-3 [Galdieria sulphuraria]
Length = 807
Score = 595 bits (1535), Expect = e-167, Method: Compositional matrix adjust.
Identities = 311/497 (62%), Positives = 377/497 (75%), Gaps = 27/497 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NP++ M+LK Q RPYQEKSLSKMFGNG ARSG+IVLPCGAGK+LVG
Sbjct: 294 LLEEYDFRNDIRNPNIEMDLKATTQVRPYQEKSLSKMFGNGLARSGVIVLPCGAGKTLVG 353
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----V 116
V AAC IKK L L T+AVSV+QW QF LWSTI D I RFT+D K + ++G V
Sbjct: 354 VVAACTIKKPTLVLCTSAVSVEQWRHQFLLWSTIDDKNISRFTADIK--VKKDSGWLGSV 411
Query: 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176
+TTY MVAFGGKRS ES++I+EE+R+REWGL+L+DEVHVVPA+MFRKV+ + K+HCKLG
Sbjct: 412 TITTYTMVAFGGKRSRESQEILEEMRSREWGLILLDEVHVVPANMFRKVLGVIKAHCKLG 471
Query: 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK 236
LTATLVREDE+I D+NFLIGPKLYEANWLDL + G++A VQCAEVWCPMT EF+ EYL
Sbjct: 472 LTATLVREDEKIEDVNFLIGPKLYEANWLDLQQNGYLATVQCAEVWCPMTAEFYREYL-I 530
Query: 237 ENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGA 296
+NS K++ LY MNPNKF+ +FLIRFHE RGDKIIVF+DN+FAL YA +L +P IYG
Sbjct: 531 QNSAKRKLLYTMNPNKFQTTDFLIRFHE-NRGDKIIVFSDNIFALRTYARRLARPFIYGP 589
Query: 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRI 356
TS ER +I F+ + L TIF+SKVGD SID+PEANVIIQISSH GSRRQEAQRLGRI
Sbjct: 590 TSQAERMRIFYQFQNNPALGTIFISKVGDTSIDLPEANVIIQISSHYGSRRQEAQRLGRI 649
Query: 357 LRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPP-P 415
LR K + + +NA+FYSLVSTDTQEM+YS+KRQQFLI+QGYSF+VIT L
Sbjct: 650 LRPKPR-------SGQHFNAYFYSLVSTDTQEMYYSSKRQQFLIEQGYSFQVITHLEGMQ 702
Query: 416 DSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD---DIA--LHK-----ARRIA 465
+ L+Y+R +EQL+LL + A D+ E+ ED+D D+A L K +R
Sbjct: 703 EERHHLAYYRKEEQLSLL-AAVLAADEKETEEEFVEDSDPSGDVARILSKDGRQLTKRTN 761
Query: 466 GSMSAMSGAQGMVYMEY 482
S+ +SGA G+VY EY
Sbjct: 762 RSLRKLSGADGLVYREY 778
>gi|299115227|emb|CBN74062.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 884
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 299/507 (58%), Positives = 377/507 (74%), Gaps = 24/507 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND +NP L ++LK + + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+L G
Sbjct: 384 LMEEYDFRNDTLNPPLKIDLKANTRIRAYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTG 443
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA IKKSCL L T+ VSV QW +QF+LW+ I + I FTSD KE AGV++TT
Sbjct: 444 VTAASTIKKSCLVLCTSGVSVLQWKYQFQLWTDIAEKDISCFTSDIKEAINEEAGVLITT 503
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++F G+RSE ++KII+ I REWG +L+DEVHVVPA MFRKV+S+ +HCKLGLTAT
Sbjct: 504 YSMISFAGQRSEIAKKIIDTITKREWGFMLLDEVHVVPARMFRKVLSVCNAHCKLGLTAT 563
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE-NS 239
LVRED+ I+DLNFLIGPKLYEANW+DL + G++ANVQC E WCPMT EF+SEYLK +
Sbjct: 564 LVREDDLISDLNFLIGPKLYEANWMDLTQSGYLANVQCVEAWCPMTAEFYSEYLKPGVTA 623
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
++KQ LY+MNPNKFR CE+L+R H +R DK+I+F DN+F+L ++A L+ P IYGAT
Sbjct: 624 RQKQLLYIMNPNKFRTCEYLVRTH-MERNDKVIIFGDNVFSLKKFATILQIPFIYGATPE 682
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER++IL F+ + +N I LSKVGD SIDIPEANVIIQISSH GSRRQEAQRLGRILR
Sbjct: 683 SERSRILGTFRVNPLVNCIGLSKVGDTSIDIPEANVIIQISSHFGSRRQEAQRLGRILRP 742
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K ++ GG +NAFFY+LVSTDT EM+YS+KRQQ+L+DQGY+FKV+T L + +
Sbjct: 743 KSNVD----GG---FNAFFYTLVSTDTSEMYYSSKRQQYLVDQGYTFKVVTDLA---NAS 792
Query: 420 DLSYHRLDE---QLALLGKVLSAGDDAVGLEQ---LDEDADDIALHKAR----RIAGSMS 469
D S +L + +L +L + L A D ++ LD D DDI AR R G++
Sbjct: 793 DRSQSKLPDRKSELRVLQETLMAKTDQEEKDEKKMLDRDMDDIGEGSARGTVMRRKGNLG 852
Query: 470 AMSGAQGMVYMEY--RYDPWQKQLFKA 494
A+SGA G YMEY R P + LFK+
Sbjct: 853 ALSGADGSRYMEYDSRPPPKKHPLFKS 879
>gi|19114386|ref|NP_593474.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces pombe 972h-]
gi|46395601|sp|O13768.1|ERCC3_SCHPO RecName: Full=Probable DNA repair helicase ercc3
gi|2370478|emb|CAB11506.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces pombe]
Length = 804
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 304/506 (60%), Positives = 379/506 (74%), Gaps = 23/506 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN+NPDL ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 299 LLEEYDFRNDNINPDLPIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 358
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF WS I+ D I FT+D KERF AGVVV+T
Sbjct: 359 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKPDHIAVFTADHKERFHSEAGVVVST 418
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +L+DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 419 YSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTAT 478
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPK+YEANW+DL + G IA VQCAEVWC MT EF++EYL +ENS+
Sbjct: 479 LVREDDKIDDLNFLIGPKMYEANWMDLAQKGHIAKVQCAEVWCAMTTEFYNEYL-RENSR 537
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 538 KRMLLYIMNPKKFQACQFLIDYHE-KRGDKIIVFSDNVYALRAYAIKLGKYFIYGGTPQQ 596
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 597 ERMRILENFQYNELVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 656
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKVIT+L ++ +
Sbjct: 657 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLIDQGYAFKVITNLKGMENLPN 709
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI---------ALHKARRIAGSMSAM 471
L+Y E+L LL +VL ++A L +D +D A KA+R +GS+S +
Sbjct: 710 LAYASKAERLELLQEVLLQNEEAADL----DDGEDTSFGSRSLSRAPAKAKRSSGSLSTL 765
Query: 472 SGAQGMVYMEYRYDPWQKQLFKASSQ 497
+GA M Y+EY KQL K S +
Sbjct: 766 AGADNMAYVEYNKSA-NKQLKKDSKE 790
>gi|301094774|ref|XP_002896491.1| TFIIH basal transcription factor complex helicase XPB subunit
[Phytophthora infestans T30-4]
gi|262109466|gb|EEY67518.1| TFIIH basal transcription factor complex helicase XPB subunit
[Phytophthora infestans T30-4]
Length = 820
Score = 594 bits (1532), Expect = e-167, Method: Compositional matrix adjust.
Identities = 297/499 (59%), Positives = 370/499 (74%), Gaps = 18/499 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND PDL M+LKP + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+L G
Sbjct: 321 LMEEYDFRNDKTIPDLEMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTG 380
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA IKKSCLCL T+AVSV+QW QFK+W+ I + +I RFTS +K+ ++GV+VTT
Sbjct: 381 VTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPEKKIARFTSVAKDYINPDSGVIVTT 440
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+R+ SE++++ I+ REWG +L+DEVHVVPA MFRKVI HCKLGLTAT
Sbjct: 441 YTMVAFGGRRARASEEVMQLIQGREWGCILLDEVHVVPAKMFRKVIGSIACHCKLGLTAT 500
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED+ I DLNFLIGPKLYEANW+DL + GF+ANV C EVWCPM EF+ EYL++ S
Sbjct: 501 LVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMAGEFYREYLREAKSA 560
Query: 241 KKQA-LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+A LYV NPNKF A EFLI++HE +RGDKI++F+D++FAL YA KL K IYG T
Sbjct: 561 RKRALLYVANPNKFTAAEFLIQYHE-ERGDKILLFSDDVFALRLYATKLNKGYIYGGTGE 619
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++LQ+F+ S +N I +SKVGD SID+PEANVIIQ+SSH GSRRQEAQRLGRILR
Sbjct: 620 RERMRLLQSFRSSPLVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRP 679
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K GG +NAFFY+L+STDT EMFYS KRQQ+L+DQGY+FKV+T L P S
Sbjct: 680 KAN----ATGG---FNAFFYTLISTDTHEMFYSNKRQQYLVDQGYTFKVVTDLFEPGSFQ 732
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQL-----DEDADDIALH---KARRIAGSMSAM 471
+ + R ++Q ALL +VLSA ++ ++ DED + L + ++ S+ A+
Sbjct: 733 GV-FTRKEDQRALLNEVLSADVESAAKDENAAIRDDEDLSRLELSGHGRKKKKLSSLGAL 791
Query: 472 SGAQGMVYMEYRYDPWQKQ 490
SGA G YMEY KQ
Sbjct: 792 SGADGTKYMEYSAGHGAKQ 810
>gi|164655445|ref|XP_001728852.1| hypothetical protein MGL_4019 [Malassezia globosa CBS 7966]
gi|159102738|gb|EDP41638.1| hypothetical protein MGL_4019 [Malassezia globosa CBS 7966]
Length = 815
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 293/476 (61%), Positives = 358/476 (75%), Gaps = 10/476 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +NPDL ++LKP RPYQEKSL+KMFGN RARSGIIVLPCGAGK+LVG
Sbjct: 267 MLEEYDFRNDMLNPDLEIDLKPITHIRPYQEKSLAKMFGNSRARSGIIVLPCGAGKTLVG 326
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS +QD QI FT+D KE+F G +G+VV+T
Sbjct: 327 ITAACTIKKSCLVLCTSSVSVMQWRQQFLQWSNVQDSQISVFTADEKEKFSGASGIVVST 386
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA GKRS S+K++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 387 YSMVANTGKRSHTSQKMMNFLESREWGFILLDEVHVVPASMFRRVLTKIKAHAKLGLTAT 446
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I +LNFL+GPKLYEANW+DL G IA VQCAEVWCPMT EF+ EYL +E S+
Sbjct: 447 LVREDEKIDELNFLVGPKLYEANWMDLAAKGHIATVQCAEVWCPMTAEFYREYL-RERSR 505
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNP KF+A ++LI +HE RGDKIIVF+DN++AL YA+KL KP I+G T +
Sbjct: 506 KKMLLYCMNPTKFQAAQYLIHYHE-NRGDKIIVFSDNVYALEAYAIKLGKPYIHGGTPQI 564
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 565 ERMRILQNFQHNPIVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 624
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYSTKRQQFLIDQGY+F+VI +L ++
Sbjct: 625 RR-------NDEGFNAFFYSLVSRDTAEMFYSTKRQQFLIDQGYAFRVIMNLVGQENMPG 677
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIALHKARRIAGSMSAMSGAQ 475
L Y EQ+ LL VL A + A + A A+R+ GS++A+ GA
Sbjct: 678 LVYSSKSEQIELLQSVLIASESAADFGSDVKPGESASAAPSAKRMMGSLNALGGAH 733
>gi|157135000|ref|XP_001663396.1| rad25/xp-b DNA repair helicase [Aedes aegypti]
gi|108870345|gb|EAT34570.1| AAEL013205-PA [Aedes aegypti]
Length = 810
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/483 (60%), Positives = 362/483 (74%), Gaps = 9/483 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N D+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 322 LLAEYDFRNDTINADINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 381
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 382 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 440
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 441 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 500
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM EF+ EYL + S
Sbjct: 501 LLREDDKIADLNFLIGPKLYEANWLELQKRGYIARVQCAEVWCPMAPEFYREYLVAKTS- 559
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP KFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 560 KKMLLYVMNPAKFRACQYLIRYHE-KRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 618
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 619 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 678
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L DS D
Sbjct: 679 ------KGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRFLVNQGYSYKVITHLAGMDSDPD 732
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VLSA D E++ + + G +S+MSGA VY+
Sbjct: 733 LFYKTREEQGQLLQQVLSATDMDCEDERIPGEGTGAPRPGGSKRTGGLSSMSGADDAVYL 792
Query: 481 EYR 483
E+R
Sbjct: 793 EFR 795
>gi|157134194|ref|XP_001663182.1| rad25/xp-b DNA repair helicase [Aedes aegypti]
gi|108870577|gb|EAT34802.1| AAEL012991-PA [Aedes aegypti]
Length = 810
Score = 593 bits (1528), Expect = e-167, Method: Compositional matrix adjust.
Identities = 290/483 (60%), Positives = 362/483 (74%), Gaps = 9/483 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N D+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 322 LLAEYDFRNDTINADINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 381
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 382 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 440
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 441 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 500
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM EF+ EYL + S
Sbjct: 501 LLREDDKIADLNFLIGPKLYEANWLELQKRGYIARVQCAEVWCPMAPEFYREYLVAKTS- 559
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP KFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 560 KKMLLYVMNPAKFRACQYLIRYHE-KRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQS 618
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 619 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 678
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L DS D
Sbjct: 679 ------KGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRFLVNQGYSYKVITHLAGMDSDPD 732
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VLSA D E++ + + G +S+MSGA VY+
Sbjct: 733 LFYKTREEQGQLLQQVLSATDMDCEDERIPGEGTGAPRPGGSKRTGGLSSMSGADDAVYL 792
Query: 481 EYR 483
E+R
Sbjct: 793 EFR 795
>gi|194751011|ref|XP_001957820.1| GF10598 [Drosophila ananassae]
gi|190625102|gb|EDV40626.1| GF10598 [Drosophila ananassae]
Length = 803
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 294/492 (59%), Positives = 364/492 (73%), Gaps = 25/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 312 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 371
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 372 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 430
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 431 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 490
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 491 LLREDDKIADLNFLIGPKLYEANWLELQKKGFIARVQCAEVWCPMSPEFYREYLTTKTS- 549
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 550 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 608
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 609 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 668
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 669 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 722
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGS---------MSAM 471
L Y DEQ LL VLSA D LD + + + R GS +S+M
Sbjct: 723 LLYGTHDEQAQLLQLVLSASD-------LDCEDEKVPGEPGYRPGGSGGTTKRTGGLSSM 775
Query: 472 SGAQGMVYMEYR 483
SG VY E+R
Sbjct: 776 SGGDDAVYYEHR 787
>gi|158300446|ref|XP_320364.4| AGAP012169-PA [Anopheles gambiae str. PEST]
gi|157013163|gb|EAA00171.4| AGAP012169-PA [Anopheles gambiae str. PEST]
Length = 812
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/493 (59%), Positives = 365/493 (74%), Gaps = 9/493 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N D+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 325 LLAEYDFRNDTINADINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 384
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 385 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 443
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 444 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 503
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM EF+ EYL + S
Sbjct: 504 LLREDDKIADLNFLIGPKLYEANWLELQKRGYIARVQCAEVWCPMAPEFYREYLIAKTS- 562
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP KFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 563 KKMLLYVMNPAKFRACQYLIRYHE-KRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQN 621
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 622 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 681
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L +S D
Sbjct: 682 ------KGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRFLVNQGYSYKVITHLAGMESDPD 735
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VLSA D E++ D + + G +S+M+GA +Y
Sbjct: 736 LFYKTREEQGQLLQQVLSATDMDCEDERMPGDGTGVPRPGGSKRTGGLSSMAGADDAIYY 795
Query: 481 EYRYDPWQKQLFK 493
E + Q LFK
Sbjct: 796 ERKKSAHQHPLFK 808
>gi|325189336|emb|CCA23856.1| DNA excision repair crosscomplementing protein similar to human
Xeroderma pigmentosum group B DNA repair protein
putative [Albugo laibachii Nc14]
Length = 811
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 296/493 (60%), Positives = 364/493 (73%), Gaps = 20/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND PD+ M+LKP + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+L G
Sbjct: 309 LMEEYDFRNDKTIPDIEMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTG 368
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA IKKSCLCL T+AVSV+QW QFK+W+ I + +I RFTS +K+ N+GV+VTT
Sbjct: 369 VTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPESKIARFTSVAKDYIDPNSGVIVTT 428
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AFGGKR+ SE++++ I+ REWG LL+DEVHVVPA MFRKVI HCKLGLTAT
Sbjct: 429 YTMIAFGGKRARASEEVMQLIQGREWGSLLLDEVHVVPAKMFRKVIGSIACHCKLGLTAT 488
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK-ENS 239
LVRED+ I DLNFLIGPKLYEANW+DL + GF+ANV C EVWCPMT EF+ EYLK+ +N+
Sbjct: 489 LVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGEFYREYLKENKNA 548
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+ LYV NPNKF A EFLI++HE +RGDKI+VF+D++FAL YA KL K IYG T
Sbjct: 549 RKRALLYVANPNKFTAAEFLIQYHE-KRGDKILVFSDDVFALRLYATKLNKGYIYGGTGE 607
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++LQ+F+ S +N I +SKVGD SID+PEANVIIQ+SSH GSRRQEAQRLGRILR
Sbjct: 608 RERMRLLQSFRNSPLVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRP 667
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K GG +NAFFY+L+STDT EMFYS KRQQ+L+DQGY+FKV+T L S
Sbjct: 668 KAN----ATGG---FNAFFYTLISTDTHEMFYSNKRQQYLVDQGYTFKVVTELYDTKSFK 720
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAG----------SMS 469
+ + R + Q LL +VLSA ++ ++ DD L + G S+
Sbjct: 721 GV-FTRKEAQRELLEEVLSADVESAARDENAAIRDDEDLSRLELAGGADGGRKKKKMSLG 779
Query: 470 AMSGAQGMVYMEY 482
A+SGA G YMEY
Sbjct: 780 ALSGADGTKYMEY 792
>gi|213407190|ref|XP_002174366.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces japonicus yFS275]
gi|212002413|gb|EEB08073.1| transcription factor TFIIH complex ERCC-3 subunit
[Schizosaccharomyces japonicus yFS275]
Length = 800
Score = 592 bits (1525), Expect = e-166, Method: Compositional matrix adjust.
Identities = 300/500 (60%), Positives = 382/500 (76%), Gaps = 13/500 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDN+NPDL+++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 297 LLEEYDFRNDNINPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 356
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VSV QW QF WS I+ D + FT+D KE FR AG+VV+T
Sbjct: 357 ITAACTIKKSVIVLCTSSVSVMQWRQQFLQWSNIKSDHVAVFTADHKEAFRSEAGIVVST 416
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ + REWG +L+DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 417 YSMVANTRNRSYDSQKMMDFLTGREWGFILLDEVHVVPAAMFRRVVTTIAAHTKLGLTAT 476
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPK+YEANW+DL + G IANVQCAEVWCPMT EF++EYL +E+S+
Sbjct: 477 LVREDDKIDDLNFLIGPKMYEANWMDLAQKGHIANVQCAEVWCPMTAEFYNEYL-REDSR 535
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 536 KRMLLYIMNPKKFQACQFLIDYHE-KRGDKIIVFSDNVYALRAYALKLGKYFIYGGTPQQ 594
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 595 ERMRILENFQYNELVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 654
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKV+T+L ++ +
Sbjct: 655 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLIDQGYAFKVVTNLKGMENLPN 707
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKARRIAGSMSAMSGAQGM 477
L+Y E+L LL +VL +DA L++ +E + A +A+R GS+S ++GA M
Sbjct: 708 LAYATKAERLELLQEVLLQNEDAADLDEGEEYSGFGRARAAARAKRANGSLSTLAGADNM 767
Query: 478 VYMEYRYDPWQKQLFKASSQ 497
Y+EY KQL + S +
Sbjct: 768 AYVEYNKSA-NKQLKRESKE 786
>gi|194868422|ref|XP_001972288.1| GG15440 [Drosophila erecta]
gi|190654071|gb|EDV51314.1| GG15440 [Drosophila erecta]
Length = 802
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/486 (60%), Positives = 364/486 (74%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 311 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 371 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 430 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 490 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 549 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 608 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ D
Sbjct: 668 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDTD 721
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKARRIAGSMSAMSGAQGM 477
L Y +EQ LL VLSA D E+L + + RR+ G +S+MSG
Sbjct: 722 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGFRPSGSGGNVRRVGG-LSSMSGGDDA 780
Query: 478 VYMEYR 483
VY EYR
Sbjct: 781 VYYEYR 786
>gi|242005969|ref|XP_002423832.1| DNA excision repair protein haywire, putative [Pediculus humanus
corporis]
gi|212507048|gb|EEB11094.1| DNA excision repair protein haywire, putative [Pediculus humanus
corporis]
Length = 794
Score = 591 bits (1524), Expect = e-166, Method: Compositional matrix adjust.
Identities = 288/483 (59%), Positives = 366/483 (75%), Gaps = 10/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 306 LLAEYDFRNDTHNPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 365
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 366 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSIICRFTSEAKDKPMG-CGILITT 424
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+ + ++ ++++EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 425 YSMITHTQKRSWEAAETMKWLQDQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 484
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L GFIA VQCAEVWCPMT EF+ EYL S
Sbjct: 485 LLREDDKIADLNFLIGPKLYEANWLELQNRGFIARVQCAEVWCPMTPEFYREYLICRTS- 543
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNPNKFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS +
Sbjct: 544 KKLLLYVMNPNKFRACQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQM 602
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+P+A+V+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 603 ERIQILQNFKINPKINTIFVSKVADTSFDLPDASVLIQISSHGGSRRQEAQRLGRILRAK 662
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ FL++QGYS+KVIT L + D
Sbjct: 663 K------GAIAEEYNAFFYTLVSQDTIEMSYSRKRQSFLVNQGYSYKVITQLAGMEEEPD 716
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ Y DEQ LL +VL+A D E++ + + RRI G++S++SGA VY+
Sbjct: 717 MFYKTRDEQGQLLQQVLAANDTDAEEERIPGEGGKPGVMAHRRI-GNISSLSGADDAVYV 775
Query: 481 EYR 483
EY+
Sbjct: 776 EYK 778
>gi|195493190|ref|XP_002094310.1| GE21750 [Drosophila yakuba]
gi|194180411|gb|EDW94022.1| GE21750 [Drosophila yakuba]
Length = 802
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 293/486 (60%), Positives = 365/486 (75%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 311 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 371 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 430 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 490 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 549 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 608 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 668 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 721
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKARRIAGSMSAMSGAQGM 477
L Y +EQ LL VLSA D E+L + + RR+ G +S+MSG
Sbjct: 722 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGFRPSGSGGTVRRVGG-LSSMSGGDDA 780
Query: 478 VYMEYR 483
VY EYR
Sbjct: 781 VYYEYR 786
>gi|358058547|dbj|GAA95510.1| hypothetical protein E5Q_02165 [Mixia osmundae IAM 14324]
Length = 966
Score = 590 bits (1522), Expect = e-166, Method: Compositional matrix adjust.
Identities = 298/496 (60%), Positives = 369/496 (74%), Gaps = 24/496 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VN +L ++LKP + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 440 MLEEYDFRNDTVNANLEIDLKPTTRIRSYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 499
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS L L T+ VSV QW QF +WS IQ+ QI FT+D KE+F G +G+VV+T
Sbjct: 500 ITAACTIKKSVLVLCTSGVSVMQWRQQFLMWSNIQERQISVFTADHKEKFAGASGIVVST 559
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS +++K+++ + +REWG +L+DEVHVVPA+MFR+V++ K+H KLGLTAT
Sbjct: 560 YSMVANRQKRSHDAQKMMDFLTSREWGFILLDEVHVVPANMFRRVVTTIKAHAKLGLTAT 619
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IA VQCAEVWC MT EF+ EYL +E ++
Sbjct: 620 LVREDDKIDDLNFLIGPKLYEANWMDLAQKGHIATVQCAEVWCNMTPEFYREYL-REKTR 678
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKF+AC+FLI++HE RGDKIIVF+DN+FAL YA KL+K I+G T V
Sbjct: 679 KRMLLYCMNPNKFQACQFLIKYHE-DRGDKIIVFSDNVFALEAYAKKLQKAYIHGGTPQV 737
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 738 ERMRILAHFQANPLVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 797
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ +NAFFYSLV+ D +EM+YSTKRQQFLIDQGY+FKVIT L + D
Sbjct: 798 RR-------NDTGFNAFFYSLVTRDCEEMYYSTKRQQFLIDQGYAFKVITQLKGIEDMED 850
Query: 421 LSYHRLDEQLALLGKVLSAGDDA------VGLEQLD-------EDADDIALHKA--RRIA 465
L Y EQ+ LL VL A + +G + D +D A A +R+
Sbjct: 851 LVYKSKSEQIELLQSVLLANESEAELGTDIGFTEGDLPGTVTSKDFKQPAKGGAVVKRVM 910
Query: 466 GSMSAMSGAQGMVYME 481
GS++A+SGAQ M YME
Sbjct: 911 GSLTALSGAQSMSYME 926
>gi|170064904|ref|XP_001867720.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
gi|167882123|gb|EDS45506.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
Length = 544
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/483 (60%), Positives = 364/483 (75%), Gaps = 10/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N D+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 57 LLAEYDFRNDTINADINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 116
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 117 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 175
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 176 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 235
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM EF+ EYL + S
Sbjct: 236 LLREDDKIADLNFLIGPKLYEANWLELQKRGYIARVQCAEVWCPMAPEFYREYLVTKTS- 294
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP KFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 295 KKMLLYVMNPQKFRACQYLIRYHE-KRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQN 353
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 354 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 413
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L +S D
Sbjct: 414 ------KGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRFLVNQGYSYKVITHLAGMESDPD 467
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VLSA D E++ + ++R G +S+MSGA VYM
Sbjct: 468 LFYKTREEQGQLLQQVLSASDMDCEDERIPGEGGAPRPGGSKRTGG-LSSMSGADDAVYM 526
Query: 481 EYR 483
E+R
Sbjct: 527 EFR 529
>gi|312383928|gb|EFR28807.1| hypothetical protein AND_02780 [Anopheles darlingi]
Length = 834
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 290/493 (58%), Positives = 365/493 (74%), Gaps = 9/493 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N D+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 347 LLAEYDFRNDTINADINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 406
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 407 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 465
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 466 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 525
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM EF+ EYL + S
Sbjct: 526 LLREDDKIADLNFLIGPKLYEANWLELQKRGYIARVQCAEVWCPMAPEFYREYLLAKTS- 584
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP KFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 585 KKMLLYVMNPAKFRACQYLIRYHE-KRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQN 643
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 644 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 703
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L +S D
Sbjct: 704 ------KGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRFLVNQGYSYKVITHLAGMESDTD 757
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +V+SA D E++ + + + G +S+M+GA +Y
Sbjct: 758 LFYKTREEQGQLLQQVMSASDMDCEDERMPGEGLGVPRPGGSKRTGGLSSMAGADDAIYY 817
Query: 481 EYRYDPWQKQLFK 493
E R Q LFK
Sbjct: 818 ERRKTGHQHPLFK 830
>gi|195171461|ref|XP_002026524.1| GL15471 [Drosophila persimilis]
gi|198465827|ref|XP_001353779.2| GA20769 [Drosophila pseudoobscura pseudoobscura]
gi|194111430|gb|EDW33473.1| GL15471 [Drosophila persimilis]
gi|198150332|gb|EAL29513.2| GA20769 [Drosophila pseudoobscura pseudoobscura]
Length = 797
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/483 (59%), Positives = 363/483 (75%), Gaps = 10/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 309 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 368
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 369 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 427
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 428 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 487
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 488 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 546
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 547 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 605
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV++QISSH GSRRQEAQRLGRILRAK
Sbjct: 606 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLVQISSHGGSRRQEAQRLGRILRAK 665
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +
Sbjct: 666 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDTN 719
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL VLSA D E+L + +R AG +S+MSG +Y
Sbjct: 720 LMYGLQEEQAQLLQLVLSASDLDCEDEKLPGEPGYRPGGTTKR-AGGLSSMSGGDDAIYY 778
Query: 481 EYR 483
E+R
Sbjct: 779 EHR 781
>gi|340905279|gb|EGS17647.1| DNA repair helicase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 867
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 287/492 (58%), Positives = 370/492 (75%), Gaps = 23/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND++NP+L ++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 337 MLEEYDFRNDDINPNLEIDLRPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 396
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FT++SK RF+G+ G++VTT
Sbjct: 397 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAIFTAESKNRFQGSTGIIVTT 456
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +R REWGL+L+DEVHVVPA MFR+VIS KSH KLGLTAT
Sbjct: 457 YSMVTNSRERSHDSKKMMDFLRGREWGLMLLDEVHVVPAEMFRRVISSIKSHAKLGLTAT 516
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED+RI+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ EYL+ N++
Sbjct: 517 LLREDDRISHLNFLIGPKLYEANWMELSQQGHIAKVQCAEVWCPMPTEFYDEYLRA-NAR 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL+K IYG TS
Sbjct: 576 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLKKVFIYGGTSQA 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 ERMQVLENFQHNPEVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L + D
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITHLANIEQTPD 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-----------ALHKARRIAGSMS 469
L++ E LL + L D+ G E+ D + DD+ AL RR AG +S
Sbjct: 748 LAFSTPQEVRELLQRTLV--DNEKGAEE-DVETDDLFGRTGRKKKAGALSGVRRTAGMLS 804
Query: 470 AMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 805 ELSGGQDMAYIE 816
>gi|170041186|ref|XP_001848354.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
gi|167864719|gb|EDS28102.1| TFIIH basal transcription factor complex helicase XPB subunit
[Culex quinquefasciatus]
Length = 810
Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/483 (60%), Positives = 364/483 (75%), Gaps = 10/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +N D+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 323 LLAEYDFRNDTINADINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 382
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 383 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 441
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 442 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 501
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM EF+ EYL + S
Sbjct: 502 LLREDDKIADLNFLIGPKLYEANWLELQKRGYIARVQCAEVWCPMAPEFYREYLVTKTS- 560
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP KFRAC++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 561 KKMLLYVMNPQKFRACQYLIRYHE-KRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQN 619
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 620 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 679
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L +S D
Sbjct: 680 ------KGAIAEEYNAFFYTLVSQDTLEMGYSRKRQRFLVNQGYSYKVITHLAGMESDPD 733
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VLSA D E++ + ++R G +S+MSGA VYM
Sbjct: 734 LFYKTREEQGQLLQQVLSASDMDCEDERIPGEGGAPRPGGSKRTGG-LSSMSGADDAVYM 792
Query: 481 EYR 483
E+R
Sbjct: 793 EFR 795
>gi|24662247|ref|NP_524020.2| haywire, isoform A [Drosophila melanogaster]
gi|221331068|ref|NP_001137931.1| haywire, isoform B [Drosophila melanogaster]
gi|68068031|sp|Q02870.2|ERCC3_DROME RecName: Full=DNA excision repair protein haywire; AltName:
Full=ATP-dependent DNA helicase hay; AltName:
Full=ERCC-3 homolog protein; AltName: Full=ERCC3Dm
gi|7294816|gb|AAF50150.1| haywire, isoform A [Drosophila melanogaster]
gi|94400453|gb|ABF17890.1| FI01118p [Drosophila melanogaster]
gi|220902549|gb|ACL83286.1| haywire, isoform B [Drosophila melanogaster]
Length = 798
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/485 (60%), Positives = 363/485 (74%), Gaps = 11/485 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 664 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 717
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD--DIALHKARRIAGSMSAMSGAQGMV 478
L Y +EQ LL VLSA D E+L + A R G +S+MSG +
Sbjct: 718 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGAVRRVGGLSSMSGGDDAI 777
Query: 479 YMEYR 483
Y E+R
Sbjct: 778 YYEHR 782
>gi|195326581|ref|XP_002030004.1| GM25215 [Drosophila sechellia]
gi|194118947|gb|EDW40990.1| GM25215 [Drosophila sechellia]
Length = 802
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 291/486 (59%), Positives = 365/486 (75%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 311 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 371 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 430 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 490 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 549 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 608 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 668 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 721
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKARRIAGSMSAMSGAQGM 477
L Y +EQ LL VLSA D E+L + + RR+ G +S+MSG
Sbjct: 722 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGTVRRVGG-LSSMSGGDDA 780
Query: 478 VYMEYR 483
+Y E+R
Sbjct: 781 IYYEHR 786
>gi|195589302|ref|XP_002084391.1| GD14248 [Drosophila simulans]
gi|194196400|gb|EDX09976.1| GD14248 [Drosophila simulans]
Length = 802
Score = 589 bits (1519), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/486 (59%), Positives = 365/486 (75%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 311 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 371 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 430 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 490 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 549 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 608 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 668 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 721
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKARRIAGSMSAMSGAQGM 477
L Y +EQ LL VLSA D E+L + + RR+ G +S+MSG
Sbjct: 722 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGTVRRVGG-LSSMSGGDDA 780
Query: 478 VYMEYR 483
+Y E+R
Sbjct: 781 IYYEHR 786
>gi|342321393|gb|EGU13327.1| tRNA Guanine-N1-methyltransferase [Rhodotorula glutinis ATCC
204091]
Length = 1800
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 302/508 (59%), Positives = 374/508 (73%), Gaps = 25/508 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
M+EEYDFR+D +NP L ++LKP A RPYQEKSL KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 465 MMEEYDFRHDEINPTLEIDLKPSAALRPYQEKSLGKMFGNGRARSGIIVLPCGAGKTLVG 524
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AA I+KSC+ L T++VSV QW QF WSTI++ I FT+D KE+F G AG+VV+T
Sbjct: 525 ITAATTIRKSCIVLCTSSVSVMQWRQQFLQWSTIKESAISVFTADQKEKFTGEAGIVVST 584
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS +S+K+++ + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 585 YSMVANRQKRSHDSQKMMDFLTSREWGFILLDEVHVVPAAMFRRVVTKIKAHTKLGLTAT 644
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW+DL + G IA VQCAEVWC MT EF+ EYL +E+S+
Sbjct: 645 LVREDDKIDDLNFLIGPKLYEANWMDLAENGHIAKVQCAEVWCDMTPEFYREYL-RESSR 703
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNP KF+AC+FLI++HE RGDKIIVF+DN++AL YA KL K I+G T V
Sbjct: 704 KKMLLYCMNPRKFQACQFLIQYHE-NRGDKIIVFSDNVYALEAYAKKLGKLYIHGGTPQV 762
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 763 ERMRILQNFQHNPIVNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 822
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+F+VITSL + +
Sbjct: 823 RRND-------EGFNAFFYSLVSKDTQEMYYSSKRQGFLVDQGYAFRVITSLDGLEQLDN 875
Query: 421 LSYHRLDEQLALLGKVL--SAGDDAVGLEQLDEDADDIA-------------LHKARRIA 465
L Y EQ+ LL VL S D VG +++ + A +A RIA
Sbjct: 876 LVYPTKAEQIELLQSVLLASETDADVGGDEVSKAPSGAASGYNSPAPGRRDGAPQATRIA 935
Query: 466 GSMSAMSGAQGMVYMEYRYDPWQKQLFK 493
GS+ A+SG Q M Y E R KQL K
Sbjct: 936 GSLQALSGGQSMAYSE-RQKSANKQLSK 962
>gi|11079|emb|CAA48386.1| ERCC3 [Drosophila melanogaster]
gi|260979|gb|AAA12421.1| xeroderma pigmentosum complementation-group B correcting gene
homolog [Drosophila melanogaster]
Length = 802
Score = 588 bits (1517), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/492 (59%), Positives = 365/492 (74%), Gaps = 25/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 311 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 371 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 430 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 490 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 549 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 608 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 668 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 721
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGS---------MSAM 471
L Y +EQ LL VLSA D LD + + + R +GS +S+M
Sbjct: 722 LMYGTQEEQGQLLQLVLSASD-------LDCEDEKLPGEPGYRPSGSGGIVRRVGGLSSM 774
Query: 472 SGAQGMVYMEYR 483
SG +Y E+R
Sbjct: 775 SGGDDAIYYEHR 786
>gi|91078404|ref|XP_974506.1| PREDICTED: similar to rad25/xp-b DNA repair helicase [Tribolium
castaneum]
gi|270003880|gb|EFA00328.1| hypothetical protein TcasGA2_TC003167 [Tribolium castaneum]
Length = 778
Score = 588 bits (1516), Expect = e-165, Method: Compositional matrix adjust.
Identities = 289/483 (59%), Positives = 362/483 (74%), Gaps = 9/483 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++L+P A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 288 LLAEYDFRNDTINPDINVDLRPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G ++VTT
Sbjct: 348 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CSILVTT 406
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ +RS E+E+ ++ ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 407 YSMITHTQRRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 466
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPMT EF+ EYL + S
Sbjct: 467 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMTPEFYREYLGCKTS- 525
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LYVMNPNKFRA ++LIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 526 KRLLLYVMNPNKFRATQYLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQG 584
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 585 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 644
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D D
Sbjct: 645 K------GAIAEEYNAFFYTLVSQDTMEMNYSRKRQRFLVNQGYSYKVITKLAGMDEEPD 698
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L Y +EQ LL +VL+A D E++ + A R G M +MSGA VY
Sbjct: 699 LMYKTREEQGQLLQQVLAASDIDCEDEKVPGEGGRGAGGSGNRRTGQMGSMSGADDAVYY 758
Query: 481 EYR 483
EY+
Sbjct: 759 EYK 761
>gi|195017332|ref|XP_001984577.1| GH14950 [Drosophila grimshawi]
gi|193898059|gb|EDV96925.1| GH14950 [Drosophila grimshawi]
Length = 806
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 291/488 (59%), Positives = 364/488 (74%), Gaps = 18/488 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 316 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 375
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 376 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 434
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 435 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 494
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 495 LLREDDKIADLNFLIGPKLYEANWLELQKKGFIARVQCAEVWCPMSPEFYREYLTTKTS- 553
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 554 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 612
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 613 ERIQILQNFKFNAKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 672
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 673 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTESD 726
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR-----RIAGSMSAMSGAQ 475
L Y +EQ LL VLSA D L+ DE ++ + G +S+MSG
Sbjct: 727 LFYGTQEEQGQLLQLVLSASD----LDCEDEKVPGEPGYRPNGPGTTKRMGGLSSMSGGD 782
Query: 476 GMVYMEYR 483
+Y E+R
Sbjct: 783 DAIYYEHR 790
>gi|195378160|ref|XP_002047852.1| GJ13670 [Drosophila virilis]
gi|194155010|gb|EDW70194.1| GJ13670 [Drosophila virilis]
Length = 809
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/486 (59%), Positives = 364/486 (74%), Gaps = 13/486 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 318 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 377
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 378 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 436
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 437 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 496
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 497 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 555
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 556 KKMLLYVMNPSKFRSCQFLIKYHE-KRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 614
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 615 ERIQILQNFKFNAKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 674
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ D
Sbjct: 675 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTETD 728
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKARRIAGSMSAMSGAQGM 477
L Y +EQ LL VLSA D E++ + A RR+ G +S+MSG
Sbjct: 729 LMYGTQEEQGQLLQLVLSASDLDCEDEKVPGEPGYRPSGAGGTTRRMGG-LSSMSGGDDA 787
Query: 478 VYMEYR 483
+Y E+R
Sbjct: 788 IYYEHR 793
>gi|223999873|ref|XP_002289609.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220974817|gb|EED93146.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 625
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/412 (66%), Positives = 332/412 (80%), Gaps = 2/412 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND VNPD+ M+LKPH + R YQE+SLSKMFGNGRARSGIIVLPCGAGK+L G
Sbjct: 216 LMEEYDFRNDKVNPDVPMDLKPHTRIRRYQERSLSKMFGNGRARSGIIVLPCGAGKTLTG 275
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA IKKS +CL TNAVSV QW +QFKLW+ I D+ IC FTSD KE V++TT
Sbjct: 276 VTAAQTIKKSVVCLCTNAVSVLQWKYQFKLWTNIPDENICVFTSDKKEDINPGGCVLITT 335
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+++GG+RS++S +++ IR+REWGLLLMDEVHVVPA MFR+VI K+HC+LGLTAT
Sbjct: 336 YTMISYGGQRSDKSAEVMNIIRSREWGLLLMDEVHVVPAKMFRRVIGSVKAHCRLGLTAT 395
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED+ I+DLNFLIGPKLYEANW+DL G++ANVQC EVW PMT F EYL +N++
Sbjct: 396 LVREDDLISDLNFLIGPKLYEANWMDLTTQGYLANVQCVEVWTPMTGPFMREYLMADNAR 455
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KQ LYVMNP+K RA EFL+RFHE +RGDKIIVF+D +++L YA L++PMIYG TS
Sbjct: 456 LKQLLYVMNPSKLRAAEFLMRFHE-ERGDKIIVFSDLVYSLKLYAAMLKRPMIYGETSER 514
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ S L TI +SKVGD SID+PEANVIIQ+SSH GSRRQEAQRLGRILR K
Sbjct: 515 ERQAILGTFRTSDALRTICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRPK 574
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
+ + +NAFFY+LVSTDTQEMFYSTKRQQ+LIDQGY+FK++T+L
Sbjct: 575 SYTQTD-GSNRSSFNAFFYTLVSTDTQEMFYSTKRQQYLIDQGYTFKIVTTL 625
>gi|15292261|gb|AAK93399.1| LD44022p [Drosophila melanogaster]
Length = 798
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/485 (59%), Positives = 362/485 (74%), Gaps = 11/485 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EY FRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 307 LLAEYVFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 366
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 367 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 425
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 426 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 485
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 486 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTS- 544
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 545 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 603
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 604 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 663
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ +D
Sbjct: 664 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTDSD 717
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDAD--DIALHKARRIAGSMSAMSGAQGMV 478
L Y +EQ LL VLSA D E+L + A R G +S+MSG +
Sbjct: 718 LMYGTQEEQGQLLQLVLSASDLDCEDEKLPGEPGYRPSGSGGAVRRVGGLSSMSGGDDAI 777
Query: 479 YMEYR 483
Y E+R
Sbjct: 778 YYEHR 782
>gi|195442635|ref|XP_002069058.1| GK12273 [Drosophila willistoni]
gi|194165143|gb|EDW80044.1| GK12273 [Drosophila willistoni]
Length = 804
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/484 (59%), Positives = 361/484 (74%), Gaps = 10/484 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 314 LLAEYDFRNDTHNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 373
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 374 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 432
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 433 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 492
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL S
Sbjct: 493 LLREDDKIADLNFLIGPKLYEANWLELQKKGFIARVQCAEVWCPMSPEFYREYLTTRTS- 551
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 552 KKMLLYVMNPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 610
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +I+Q FK + ++TIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 611 ERIQIIQNFKFNAKVSTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 670
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ D
Sbjct: 671 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGIDTEPD 724
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLD-EDADDIALHKARRIAGSMSAMSGAQGMVY 479
L Y +EQ LL VLSA D E++ E + G++S+MSG VY
Sbjct: 725 LLYGTQEEQGQLLQLVLSASDMDCEDEKMPGEPGYRAGGGGTTKRTGAISSMSGGDDAVY 784
Query: 480 MEYR 483
EYR
Sbjct: 785 YEYR 788
>gi|321473939|gb|EFX84905.1| hypothetical protein DAPPUDRAFT_300803 [Daphnia pulex]
Length = 794
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/483 (58%), Positives = 364/483 (75%), Gaps = 10/483 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND N D+N++L+P A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 302 LLAEYDFRNDTHNQDINIDLRPAAVLRPYQEKSLRKMFGNGRARSGLIVLPCGAGKSLVG 361
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTSD+K++ G +++TT
Sbjct: 362 VTACCTVRKRALVLCNSGVSVEQWKAQFKMWSTADDSMICRFTSDAKDKPHG-CSILITT 420
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
+NM+ KRS E+++ ++ ++ +EWG++++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 421 FNMITHQQKRSYEADQTMKWLQEQEWGIMVLDEVHTIPARMFRRVLTIVQAHCKLGLTAT 480
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCPM+ EF+ EYL + S
Sbjct: 481 LVREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCPMSPEFYREYLACK-SA 539
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L+VMNPNKFRAC+FLIR+HE +R DKIIVF+DN++AL YA+ + KP IYG TS
Sbjct: 540 KKMLLFVMNPNKFRACQFLIRYHE-RRNDKIIVFSDNVYALKHYALTMNKPFIYGPTSQN 598
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+P+ANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 599 ERLQILQNFKLNPKVNTIFVSKVADTSFDLPDANVLIQISSHGGSRRQEAQRLGRILRAK 658
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM +S KRQ+FL++QGYS+KVIT + D +
Sbjct: 659 ------KGAIAEEYNAFFYTLVSQDTLEMSFSRKRQRFLVNQGYSYKVITRMAGMDQDQE 712
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L+Y +EQ LL VL+A D E++ + RR+ G+M++MSGA VYM
Sbjct: 713 LNYKNKEEQANLLQMVLTASDIDADEERVPGEIGGRPGPFGRRV-GTMASMSGADDAVYM 771
Query: 481 EYR 483
EY+
Sbjct: 772 EYK 774
>gi|357619261|gb|EHJ71905.1| haywire, isoform A [Danaus plexippus]
Length = 1047
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 291/484 (60%), Positives = 369/484 (76%), Gaps = 11/484 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 248 LLAEYDFRNDAVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 307
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK WST D ICRFTS++K++ G AG+++TT
Sbjct: 308 VTAVCTVRKRALVLCNSGVSVEQWKQQFKCWSTADDSMICRFTSEAKDKPMG-AGILITT 366
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ G +RS E+E+ ++ ++ +EWGL+++DEVH +PA MFR+V+++ SH KLGLTAT
Sbjct: 367 YSMITHGQRRSWEAEQTMKWLQAQEWGLVVLDEVHTIPAKMFRRVLTIVHSHAKLGLTAT 426
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L G+IA VQCAEVWCPMT EF+ EYL ++ +
Sbjct: 427 LLREDDKIADLNFLIGPKLYEANWLELQANGYIARVQCAEVWCPMTPEFYREYLVQKIN- 485
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYVMNP+KFRAC+FL+R+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 486 KKMLLYVMNPSKFRACQFLVRYHE-RRGDKTIVFSDNVFALRHYAVKMNKPYIYGPTSQN 544
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA- 359
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRA
Sbjct: 545 ERIQILQNFKFNPKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 604
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
KG L EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D
Sbjct: 605 KGAL-------AEEYNAFFYTLVSQDTLEMAYSRKRQRFLVNQGYSYKVITELKGMDQEP 657
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVY 479
DL Y +EQ LL +VL+A + E+ + ARR AGS+++++GA +Y
Sbjct: 658 DLLYGTREEQGMLLQQVLAASETDCEEEREGGAGGAGSAGGARRTAGSLASLAGADDALY 717
Query: 480 MEYR 483
+E+R
Sbjct: 718 LEHR 721
>gi|444721477|gb|ELW62213.1| TFIIH basal transcription factor complex helicase XPB subunit
[Tupaia chinensis]
Length = 761
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 295/488 (60%), Positives = 363/488 (74%), Gaps = 34/488 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 281 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 340
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 341 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 399
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E++ + + A MFR+V+++ ++HCKLGLTAT
Sbjct: 400 YSMLGHTTKRSWEAERVFSSL-----------PCTLGTAKMFRRVLTIVQAHCKLGLTAT 448
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 449 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 507
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 508 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 566
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 567 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 626
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 627 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 679
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ DEQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 680 LAFSTKDEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 732
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 733 DDTVYMEY 740
>gi|320586174|gb|EFW98853.1| tfiih complex helicase [Grosmannia clavigera kw1407]
Length = 850
Score = 583 bits (1502), Expect = e-163, Method: Compositional matrix adjust.
Identities = 292/494 (59%), Positives = 370/494 (74%), Gaps = 28/494 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VN +L+++LKP+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 332 VLEEYDFRNDEVNANLDIDLKPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 391
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FTSD+K F GN G++VTT
Sbjct: 392 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTSDNKSMFTGNTGIIVTT 451
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +++K+++ + REWG++L+DEVHVVPA++FRKV S K+H KLGLTAT
Sbjct: 452 YSMVTQTRERSHDAKKMMDFLEGREWGMMLLDEVHVVPANIFRKVTSNLKTHSKLGLTAT 511
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+ EYL K +S+
Sbjct: 512 LLREDDKISDLNFLIGPKLYEANWMELSQQGHIARVQCAEVWCPMTTEFYEEYL-KSSSR 570
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KQALYVMNP KF+AC++LI +HE RGDKIIVF+D++FALT+YA KL K IYGATS
Sbjct: 571 TKQALYVMNPRKFQACQYLINYHE-SRGDKIIVFSDDVFALTKYATKLGKACIYGATSQS 629
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 630 ERLRILENFQHNASINTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 689
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYS+KRQ FL+DQGY+FKVIT L +
Sbjct: 690 RR-------NDEGFNAFFYSLVSKDTQEMFYSSKRQAFLVDQGYAFKVITQLQDIEKTPG 742
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDI----------ALHKARRIAGS 467
L++ E+ LL +VL V E+L ED DD+ + ARR AG+
Sbjct: 743 LAFATARERRELLQEVL------VEREKLMEDKVDDDDLWEKTKGRSMKRMPVARRTAGT 796
Query: 468 MSAMSGAQGMVYME 481
+ +SG Q M Y+E
Sbjct: 797 LGELSGGQDMAYIE 810
>gi|328773269|gb|EGF83306.1| hypothetical protein BATDEDRAFT_34108 [Batrachochytrium
dendrobatidis JAM81]
Length = 823
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/495 (56%), Positives = 369/495 (74%), Gaps = 22/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF D+ NP+L M LKP A+ RPYQ LSK+FGNGR RSG++VLPCG+GK+LVG
Sbjct: 321 VLEEYDFCADSRNPNLEMTLKPFAKLRPYQANGLSKVFGNGRVRSGVVVLPCGSGKTLVG 380
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC +KK+CL L T++VS +QW +F WSTI++ + +FTS SKE+F G AGV+++T
Sbjct: 381 VAAACTVKKNCLVLCTSSVSAEQWRREFCHWSTIKEGHVAKFTSGSKEKFVGPAGVMIST 440
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+ + GKR+ +++K++E I++REWGLL++DEVHVVPA MFRKV ++ +H KLGLTAT
Sbjct: 441 YTMITYSGKRAYDAQKLMEFIQSREWGLLILDEVHVVPAEMFRKVFTIIGTHSKLGLTAT 500
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED +I +LN+LIGPKLYEANW++L +GG IA VQCA+VWC MT EFF E+L +E S+
Sbjct: 501 LVREDNKIDNLNYLIGPKLYEANWMELARGGHIARVQCAQVWCDMTPEFFREFL-REKSR 559
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+Q LY MNP K +AC++L+ FHE GDKIIVF+DN+FAL YA KL +P IYG TS
Sbjct: 560 KRQLLYTMNPRKVQACQYLVNFHEAM-GDKIIVFSDNVFALKHYATKLHRPFIYGGTSQS 618
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ + LNTIFLSKVGD SID+PEA+ +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 619 ERFRVLQQFRFNPALNTIFLSKVGDTSIDLPEASCLIQISSHYGSRRQEAQRLGRILRAK 678
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
G YNA+FY+LVS DT+EM+Y+TKRQQFLIDQGYSF++IT + D A
Sbjct: 679 -------RGTDTGYNAYFYTLVSKDTEEMYYATKRQQFLIDQGYSFRIITHIEGMDDSAG 731
Query: 421 LSYHRLDEQLALLGKVLSAG-------------DDAVGLEQLDEDADDIALHKARRIAGS 467
L+Y L +QL LL VL + DDA+ + +E+A+ + R +G+
Sbjct: 732 LAYSSLKDQLELLNTVLISTEADYERDVHQDELDDALQTYESEEEAEIEGVQWMMRSSGT 791
Query: 468 MSAMSGAQGMVYMEY 482
M ++SGA M Y+E+
Sbjct: 792 MKSLSGADSMAYLEF 806
>gi|196001637|ref|XP_002110686.1| hypothetical protein TRIADDRAFT_22911 [Trichoplax adhaerens]
gi|190586637|gb|EDV26690.1| hypothetical protein TRIADDRAFT_22911, partial [Trichoplax
adhaerens]
Length = 704
Score = 582 bits (1501), Expect = e-163, Method: Compositional matrix adjust.
Identities = 291/499 (58%), Positives = 371/499 (74%), Gaps = 19/499 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD++++L+P RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 215 LLAEYDFRNDTVNPDISIDLRPTTILRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 274
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC +KK CL L T+ V+V+QW QFKLWSTI + I RFTSD+K++ G V ++T
Sbjct: 275 VTAACTVKKRCLVLCTSGVAVEQWKAQFKLWSTIDESLISRFTSDAKDKPSG-CSVAIST 333
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS ESE+++E ++ +EWGL+++DEVH +PA FR+V+++ +HCKLGLTAT
Sbjct: 334 YSMVAHTTKRSWESERVMEYLQGQEWGLMILDEVHTIPAKQFRRVLTVVHAHCKLGLTAT 393
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE--VWCPMTKEFFSEYLKKEN 238
LVRED++I DLNFLIGPKLYEANW++L FIA VQCAE VWCPM+ EF+ EYL +
Sbjct: 394 LVREDDKIQDLNFLIGPKLYEANWMELQSLNFIARVQCAEACVWCPMSPEFYREYLTTK- 452
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
++K YVMNPNKFRAC+FLI++HE +R DK+IVF+DN+F L YA++L KP IYG T+
Sbjct: 453 TRKHMLFYVMNPNKFRACQFLIKYHE-RRNDKVIVFSDNVFGLKHYAIELGKPYIYGPTA 511
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER +ILQ F+ + +N IF+SKVGDNS D+PEANV+IQISSH GSRRQEAQRLGRILR
Sbjct: 512 QKERLQILQNFQHNPLVNCIFISKVGDNSFDLPEANVLIQISSHGGSRRQEAQRLGRILR 571
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
AK EEYNA+FYSLVS DTQEM++S+KRQ+FLI+QGYSFKVIT L SG
Sbjct: 572 AKKD------SATEEYNAYFYSLVSQDTQEMYFSSKRQRFLINQGYSFKVITKL----SG 621
Query: 419 AD---LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA-DDIALHKARRIAGSMSAMSGA 474
D L Y +Q LL KVL+A + E++ D + + R SM+++SGA
Sbjct: 622 MDDENLLYTEKKDQHQLLQKVLAANETDAEEEKVAGDTYSTSSKSQVVRRTTSMASLSGA 681
Query: 475 QGMVYMEYRYDPWQKQLFK 493
+VY+EY + LFK
Sbjct: 682 DDLVYLEYNKPKQRHPLFK 700
>gi|328767381|gb|EGF77431.1| hypothetical protein BATDEDRAFT_20761 [Batrachochytrium
dendrobatidis JAM81]
Length = 777
Score = 582 bits (1500), Expect = e-163, Method: Compositional matrix adjust.
Identities = 282/495 (56%), Positives = 369/495 (74%), Gaps = 22/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF D+ NP+L M LKP A+ RPYQ LSK+FGNGR RSG++VLPCG+GK+LVG
Sbjct: 275 VLEEYDFCADSRNPNLEMTLKPFAKLRPYQANGLSKVFGNGRVRSGVVVLPCGSGKTLVG 334
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC +KK+CL L T++VS +QW +F WSTI++ + +FTS SKE+F G AGV+++T
Sbjct: 335 VAAACTVKKNCLVLCTSSVSAEQWRREFCHWSTIKEGHVAKFTSGSKEKFVGPAGVMIST 394
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+ + GKR+ +++K++E I++REWGLL++DEVHVVPA MFRKV ++ +H KLGLTAT
Sbjct: 395 YTMITYSGKRAYDAQKLMEFIQSREWGLLILDEVHVVPAEMFRKVFTIIGTHSKLGLTAT 454
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED +I +LN+LIGPKLYEANW++L +GG IA VQCA+VWC MT EFF E+L +E S+
Sbjct: 455 LVREDNKIDNLNYLIGPKLYEANWMELARGGHIARVQCAQVWCDMTPEFFREFL-REKSR 513
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+Q LY MNP K +AC++L+ FHE GDKIIVF+DN+FAL YA KL +P IYG TS
Sbjct: 514 KRQLLYTMNPRKVQACQYLVNFHEAM-GDKIIVFSDNVFALKHYATKLHRPFIYGGTSQS 572
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ + LNTIFLSKVGD SID+PEA+ +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 573 ERFRVLQQFRFNPALNTIFLSKVGDTSIDLPEASCLIQISSHYGSRRQEAQRLGRILRAK 632
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
G YNA+FY+LVS DT+EM+Y+TKRQQFLIDQGYSF++IT + D A
Sbjct: 633 -------RGTDTGYNAYFYTLVSKDTEEMYYATKRQQFLIDQGYSFRIITHIEGMDDSAG 685
Query: 421 LSYHRLDEQLALLGKVLSAG-------------DDAVGLEQLDEDADDIALHKARRIAGS 467
L+Y L +QL LL VL + DDA+ + +E+A+ + R +G+
Sbjct: 686 LAYSSLKDQLELLNTVLISTEADYERDVHQDELDDALQTYESEEEAEIEGVQWMMRSSGT 745
Query: 468 MSAMSGAQGMVYMEY 482
M ++SGA M Y+E+
Sbjct: 746 MKSLSGADSMAYLEF 760
>gi|296817193|ref|XP_002848933.1| DNA repair helicase RAD25 [Arthroderma otae CBS 113480]
gi|238839386|gb|EEQ29048.1| DNA repair helicase RAD25 [Arthroderma otae CBS 113480]
Length = 813
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 293/511 (57%), Positives = 374/511 (73%), Gaps = 27/511 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND++NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 302 LEEYDFRNDDINPTLDIDLKPIAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 361
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR N GV+V+TY
Sbjct: 362 TAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRNTGVIVSTY 421
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK++E +++REWGL+L+DEVHVVPA MFR V S + KLGLTATL
Sbjct: 422 SMVSQTRARSHDAEKMMEWLQSREWGLMLLDEVHVVPASMFRTVTSAIATQTKLGLTATL 481
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 482 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 540
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA+KL+K IYG T E
Sbjct: 541 AALLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALERYALKLKKAYIYGGTPQNE 599
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 600 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 659
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 660 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 712
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI------------ALHKARRIAGSMS 469
+Y +E+LALL V + + +E E+ADD+ RR A ++S
Sbjct: 713 AYATAEERLALLADVTLQNETSAAVE---ENADDLFNDRMAGGKPRGGKKPVRRNAATLS 769
Query: 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
++G + M Y+E R KQL + SS FF
Sbjct: 770 GLAGGEDMAYIE-RNKSRNKQLKERSS--FF 797
>gi|361127562|gb|EHK99526.1| putative DNA repair helicase RAD25 [Glarea lozoyensis 74030]
Length = 773
Score = 580 bits (1496), Expect = e-163, Method: Compositional matrix adjust.
Identities = 289/495 (58%), Positives = 364/495 (73%), Gaps = 26/495 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF ND NP L ++LKP AQ R YQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 260 VLEEYDFHNDKANPSLEIDLKPSAQIRTYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 319
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I + I FTSD+K +F G+ G++VT+
Sbjct: 320 ITAACTIKKGVIILCTSSMSVHQWRSEFLKWSNINPNDIAVFTSDNKGKFSGSTGIIVTS 379
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA GKRS E+ K++E I REWGL+++DEVHV PA++FRKV S K+H KLGLTAT
Sbjct: 380 YSMVAQTGKRSYEANKMMEFITKREWGLMILDEVHVAPANVFRKVTSTIKTHSKLGLTAT 439
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEYLK SK
Sbjct: 440 LLREDDKISDLNFLIGPKLYEANWMELAEDGHIARVQCAEVWCPMTTEFYSEYLKLP-SK 498
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK ++ MNP KF+A +FLI +HE +RGDKIIVFADN+FAL YA KL K IYG T +
Sbjct: 499 KKPLMWTMNPRKFQAAQFLIDYHE-KRGDKIIVFADNIFALKAYATKLNKAFIYGDTGNA 557
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 558 ERMRILENFQHNDKINTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 617
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYS+KRQ FL+DQGY+FKVIT L D D
Sbjct: 618 RR-------NDEGFNAFFYSLVSKDTQEMFYSSKRQAFLVDQGYAFKVITHLQGIDDLPD 670
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI--------------ALHKARRIAG 466
L+++ E+ LL +L A D + +LD+ DD+ ARR AG
Sbjct: 671 LAFNTPAERRELLQTILLANDADL---ELDDRGDDLFHTNDGKSQAMKKKKKANARRTAG 727
Query: 467 SMSAMSGAQGMVYME 481
++S ++G Q M Y+E
Sbjct: 728 ALSDLAGGQDMAYVE 742
>gi|296413360|ref|XP_002836382.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630199|emb|CAZ80573.1| unnamed protein product [Tuber melanosporum]
Length = 826
Score = 579 bits (1493), Expect = e-163, Method: Compositional matrix adjust.
Identities = 285/506 (56%), Positives = 373/506 (73%), Gaps = 14/506 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND N +L+M+LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 310 VLEEYDFRNDRKNANLDMDLKPQAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 369
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + LAT+++SV QW +F W+ I D I FTS++KE+FRG+AG++V+T
Sbjct: 370 ITAACTIKKSVVVLATSSMSVVQWRQEFIKWTNINPDAIAIFTSENKEKFRGDAGIIVST 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV RS +S+K+++ +++REWGLL++DEVHVVPA +FRKV+ +H KLGLTAT
Sbjct: 430 YSMVTNSRNRSHDSQKMMDFLQSREWGLLILDEVHVVPAQIFRKVVHSIATHSKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++ITDLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEYL++ +++
Sbjct: 490 LLREDDKITDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTPEFYSEYLQEPDAR 549
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK Y+MNP KF+A +FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 550 KKVLHYIMNPRKFQATQFLIDYHE-KRGDKIIVFSDNVYALRAYALKLNKAFIYGDTPQQ 608
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 609 ERLRILENFQLNDQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 668
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L +
Sbjct: 669 RR-------NDEGFNAFFYSLVSKDTAEMYYSSKRQAFLVDQGYAFKVITHLQGIEQLPG 721
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGA 474
L+Y + E+ LL +V+ +A E D D ++ + + RR G +S ++G
Sbjct: 722 LAYATVAERKELLAEVMLQNSEAGQQEGDDFDGAKLSYNAGRKGARYRRTTGRLSELAGG 781
Query: 475 QGMVYMEYRYDPWQKQLFKASSQIFF 500
M Y+EY ++ K S FF
Sbjct: 782 DDMAYIEYNRSKNKELKGKGQSSAFF 807
>gi|449016491|dbj|BAM79893.1| DNA repair helicase rad25 [Cyanidioschyzon merolae strain 10D]
Length = 967
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 284/494 (57%), Positives = 365/494 (73%), Gaps = 20/494 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP + ++LKP + RPYQEKSL+KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 447 LLEEYDFRNDTVNPSIVIDLKPQTRIRPYQEKSLAKMFGNGRARSGVIVLPCGAGKTLVG 506
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C IKK+CL L T+AVSV+QW Q LWSTI + +I RFT++ + G+ + +TT
Sbjct: 507 VTACCTIKKTCLILCTSAVSVEQWRHQLLLWSTIDEQRITRFTAEQRPNVLGD--ITITT 564
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVAFGG+RS ESE+++++IR REWGL+++DEVHVVPA+MFRKV+ + K+H KLGLTAT
Sbjct: 565 YTMVAFGGRRSSESERLLQQIREREWGLMILDEVHVVPANMFRKVLGIVKAHSKLGLTAT 624
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED ITD+NFLIGPKLYEANWLDL + G++A VQCAEVWCPMT EF+ EYL++ S
Sbjct: 625 LVREDLLITDINFLIGPKLYEANWLDLQRQGYLATVQCAEVWCPMTAEFYREYLQR-GSA 683
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K++ LY MNP K+R CEFL++FHE RGDK+I+F+DN+FAL YA LR+P IYG TS
Sbjct: 684 KRRLLYAMNPTKYRTCEFLMKFHE-ARGDKVIIFSDNIFALRYYATLLRRPFIYGPTSQT 742
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ + NTI LSKVGD SID+PEANVIIQIS GSRRQEAQRLGRILR K
Sbjct: 743 ERMRILTQFQRNPVCNTIMLSKVGDTSIDLPEANVIIQISGQYGSRRQEAQRLGRILRPK 802
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP----PPD 416
+ + + +NAF+YSLVSTDT E++++ KRQQFLIDQGY+FKVI +P P
Sbjct: 803 PRPD-------QNFNAFYYSLVSTDTSEVYFAAKRQQFLIDQGYAFKVIAHIPEMETSPS 855
Query: 417 SGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDE----DADDIALHKARRIA-GSMSAM 471
+G L+ A+L + G D ++L + + KARR+ S ++
Sbjct: 856 TGMPDKESELNALAAVLAAEDAEGADTSLADELQRRRLAQLANAPVPKARRVVHTSTQSL 915
Query: 472 SGAQGMVYMEYRYD 485
+GA ++Y E+ +D
Sbjct: 916 TGAGNLLYGEFTHD 929
>gi|327301565|ref|XP_003235475.1| TFIIH complex helicase Ssl2 [Trichophyton rubrum CBS 118892]
gi|326462827|gb|EGD88280.1| TFIIH complex helicase Ssl2 [Trichophyton rubrum CBS 118892]
Length = 819
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/511 (56%), Positives = 375/511 (73%), Gaps = 27/511 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 308 LEEYDFRNDEINPTLDIDLKPIAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 367
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + GV+V+TY
Sbjct: 368 TAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRSTGVIVSTY 427
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK++E +++REWGL+L+DEVHVVPA MFR V S + KLGLTATL
Sbjct: 428 SMVSQTRARSHDAEKMMEWLQSREWGLMLLDEVHVVPAFMFRTVTSAIATQTKLGLTATL 487
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 488 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 546
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA+KL+K IYG T E
Sbjct: 547 AALLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALERYALKLKKAYIYGGTPQNE 605
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 606 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 665
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 666 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 718
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA------------RRIAGSMS 469
+Y +E+LALL V + + +E E+ADD+ ++ RR A ++S
Sbjct: 719 AYATAEERLALLADVTLQNETSAAVE---ENADDLFNDRSAGGKSRGNKKAVRRNAATLS 775
Query: 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
++G + M Y+E+ KQL + SS FF
Sbjct: 776 GLAGGEDMAYIEHN-KSRNKQLKERSS--FF 803
>gi|326468955|gb|EGD92964.1| hypothetical protein TESG_00524 [Trichophyton tonsurans CBS 112818]
gi|326480066|gb|EGE04076.1| DEAD/DEAH box helicase [Trichophyton equinum CBS 127.97]
Length = 809
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/511 (56%), Positives = 375/511 (73%), Gaps = 27/511 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 298 LEEYDFRNDEINPTLDIDLKPIAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 357
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + GV+V+TY
Sbjct: 358 TAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRSTGVIVSTY 417
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK++E +++REWGL+L+DEVHVVPA MFR V S + KLGLTATL
Sbjct: 418 SMVSQTRARSHDAEKMMEWLQSREWGLMLLDEVHVVPAFMFRTVTSAIATQTKLGLTATL 477
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 478 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 536
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA+KL+K IYG T E
Sbjct: 537 AALLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALERYALKLKKAYIYGGTPQNE 595
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 596 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 655
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 656 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 708
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA------------RRIAGSMS 469
+Y +E+LALL V + + +E E+ADD+ ++ RR A ++S
Sbjct: 709 AYATAEERLALLADVTLQNETSAAVE---ENADDLFNDRSAGGKSRGNKKAVRRNAATLS 765
Query: 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
++G + M Y+E+ KQL + SS FF
Sbjct: 766 GLAGGEDMAYIEHNKS-RNKQLKERSS--FF 793
>gi|302656492|ref|XP_003019999.1| hypothetical protein TRV_05968 [Trichophyton verrucosum HKI 0517]
gi|291183777|gb|EFE39375.1| hypothetical protein TRV_05968 [Trichophyton verrucosum HKI 0517]
Length = 819
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/511 (56%), Positives = 375/511 (73%), Gaps = 27/511 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 308 LEEYDFRNDEINPTLDIDLKPIAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 367
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + GV+V+TY
Sbjct: 368 TAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRSTGVIVSTY 427
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK++E +++REWGL+L+DEVHVVPA MFR V S + KLGLTATL
Sbjct: 428 SMVSQTRARSHDAEKMMEWLQSREWGLMLLDEVHVVPAFMFRTVTSAIATQTKLGLTATL 487
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 488 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 546
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA+KL+K IYG T E
Sbjct: 547 AALLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALERYALKLKKAYIYGGTPQNE 605
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 606 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 665
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 666 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 718
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA------------RRIAGSMS 469
+Y +E+LALL V + + +E E+ADD+ ++ RR A ++S
Sbjct: 719 AYATAEERLALLADVTLQNETSAAVE---ENADDLFNDRSAGGKSRGNKKSVRRNAATLS 775
Query: 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
++G + M Y+E+ KQL + SS FF
Sbjct: 776 GLAGGEDMAYIEHN-KSRNKQLKERSS--FF 803
>gi|302506306|ref|XP_003015110.1| hypothetical protein ARB_06870 [Arthroderma benhamiae CBS 112371]
gi|291178681|gb|EFE34470.1| hypothetical protein ARB_06870 [Arthroderma benhamiae CBS 112371]
Length = 830
Score = 578 bits (1489), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/511 (56%), Positives = 375/511 (73%), Gaps = 27/511 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 319 LEEYDFRNDEINPTLDIDLKPIAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 378
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + GV+V+TY
Sbjct: 379 TAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRSTGVIVSTY 438
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK++E +++REWGL+L+DEVHVVPA MFR V S + KLGLTATL
Sbjct: 439 SMVSQTRARSHDAEKMMEWLQSREWGLMLLDEVHVVPAFMFRTVTSAIATQTKLGLTATL 498
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 499 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 557
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA+KL+K IYG T E
Sbjct: 558 AALLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALERYALKLKKAYIYGGTPQNE 616
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 617 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 676
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 677 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 729
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA------------RRIAGSMS 469
+Y +E+LALL V + + +E E+ADD+ ++ RR A ++S
Sbjct: 730 AYATAEERLALLADVTLQNETSAAVE---ENADDLFNDRSAGGKSRGNKKAVRRNAATLS 786
Query: 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
++G + M Y+E+ KQL + SS FF
Sbjct: 787 GLAGGEDMAYIEHN-KSRNKQLKERSS--FF 814
>gi|315049307|ref|XP_003174028.1| DNA repair helicase RAD25 [Arthroderma gypseum CBS 118893]
gi|311341995|gb|EFR01198.1| DNA repair helicase RAD25 [Arthroderma gypseum CBS 118893]
Length = 803
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 291/511 (56%), Positives = 374/511 (73%), Gaps = 27/511 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 292 LEEYDFRNDEINPTLDIDLKPIAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 351
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + GV+V+TY
Sbjct: 352 TAACTIKKGTIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFRRSTGVIVSTY 411
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK++E +++REWGL+L+DEVHVVPA MFR V S + KLGLTATL
Sbjct: 412 SMVSQTRARSHDAEKMMEWLQSREWGLMLLDEVHVVPAFMFRTVTSAIATQTKLGLTATL 471
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 472 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 530
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA+KL+K IYG T E
Sbjct: 531 AALLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALERYALKLKKAYIYGGTPQNE 589
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 590 RLRILENFQHNDQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 649
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 650 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 702
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI------------ALHKARRIAGSMS 469
+Y +E+LALL V + + +E E+ADD+ + RR A ++S
Sbjct: 703 AYATAEERLALLADVTLQNETSAAVE---ENADDLFNDRTAGGKSRGSKKGVRRNAATLS 759
Query: 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
++G + M Y+E+ KQL + SS FF
Sbjct: 760 GLAGGEDMAYIEHNKS-RNKQLKERSS--FF 787
>gi|134107131|ref|XP_777878.1| hypothetical protein CNBA5750 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260576|gb|EAL23231.1| hypothetical protein CNBA5750 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 866
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/479 (60%), Positives = 351/479 (73%), Gaps = 11/479 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP+L+++LKP RPYQE SL+KMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 333 LEEYDFRNDTINPNLDIQLKPMTVIRPYQEMSLAKMFGNGRARSGIIVLPCGAGKTLVGI 392
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKKS L L T+AVSV QW QF +S I + QIC FT KE F +AG+V++TY
Sbjct: 393 TAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTSAGIVISTY 452
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK+++ +R+REWG LL+DEVHV PA MFRK I+ K H KLGLTATL
Sbjct: 453 SMIAKTGKRAHDAEKMMQFLRSREWGFLLLDEVHVTPADMFRKCINNFKVHAKLGLTATL 512
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED+RI DL +LIGPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 513 VREDDRIGDLGYLIGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 571
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI +HE RGDK+IVF+DN+FAL YA KL K I+G T E
Sbjct: 572 RILLHAMNPNKIQACQFLINYHE-SRGDKVIVFSDNVFALEAYAKKLGKSFIHGGTPEGE 630
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ LNTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 RLRILSRFQHDPQLNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKR 690
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DTQEMFYS+KRQ FLIDQGY+FKVIT L S +L
Sbjct: 691 R-------NDEGFNAFFYSLVSKDTQEMFYSSKRQGFLIDQGYAFKVITELHGLHSMPNL 743
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ DEQL+LL VL+ GD A E D +RIAG+ + SG +M
Sbjct: 744 VFASKDEQLSLLESVLNQGDAAA--ETADHYMRLNGGKHLKRIAGTQPSTSGTTVQRFM 800
>gi|58259069|ref|XP_566947.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans JEC21]
gi|57223084|gb|AAW41128.1| general RNA polymerase II transcription factor, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 866
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 292/479 (60%), Positives = 351/479 (73%), Gaps = 11/479 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP+L+++LKP RPYQE SL+KMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 333 LEEYDFRNDTINPNLDIQLKPMTVIRPYQEMSLAKMFGNGRARSGIIVLPCGAGKTLVGI 392
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKKS L L T+AVSV QW QF +S I + QIC FT KE F +AG+V++TY
Sbjct: 393 TAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTSAGIVISTY 452
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK+++ +R+REWG LL+DEVHV PA MFRK I+ K H KLGLTATL
Sbjct: 453 SMIAKTGKRAHDAEKMMQFLRSREWGFLLLDEVHVTPADMFRKCINNFKVHAKLGLTATL 512
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED+RI DL +LIGPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 513 VREDDRIGDLGYLIGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 571
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI +HE RGDK+IVF+DN+FAL YA KL K I+G T E
Sbjct: 572 RILLHAMNPNKIQACQFLINYHE-SRGDKVIVFSDNVFALEAYAKKLGKSFIHGGTPEGE 630
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ LNTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 RLRILSRFQHDPQLNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKR 690
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DTQEMFYS+KRQ FLIDQGY+FKVIT L S +L
Sbjct: 691 R-------NDEGFNAFFYSLVSKDTQEMFYSSKRQGFLIDQGYAFKVITELHGLHSMPNL 743
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ DEQL+LL VL+ GD A E D +RIAG+ + SG +M
Sbjct: 744 VFASKDEQLSLLESVLNQGDAAA--ETADHYMRLNGGKHLKRIAGAQPSTSGTTVQRFM 800
>gi|336383510|gb|EGO24659.1| hypothetical protein SERLADRAFT_438280 [Serpula lacrymans var.
lacrymans S7.9]
Length = 845
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 290/494 (58%), Positives = 352/494 (71%), Gaps = 45/494 (9%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND +N +L+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 343 MLEEYDFRNDTINANLDIDLKPATVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVG 402
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++VSV QW QF WS + D QI FT++SKERF G +G+VV+T
Sbjct: 403 ITAACTIKKSCLVLCTSSVSVMQWKQQFMQWSNVTDRQIAVFTAESKERFAGESGIVVST 462
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS ES+K++E + +REWG +L+DEVHVVPA MFR+V++ K+H KLGLTAT
Sbjct: 463 YSMVANTHNRSHESKKMMEFLTSREWGFILLDEVHVVPAAMFRRVVTTIKAHSKLGLTAT 522
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLN++IGPKLYEANW+DL G IANVQCAEVWCPMT EF+ EYL +E S+
Sbjct: 523 LVREDDKIADLNYMIGPKLYEANWMDLAAKGHIANVQCAEVWCPMTPEFYREYL-REQSR 581
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI+FHE RGDKIIVF+DN+FAL YA KL KP I+G T
Sbjct: 582 KRMLLYCMNPKKFQACQFLIKFHE-DRGDKIIVFSDNVFALEAYAKKLGKPYIHGGT--- 637
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
+VGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 638 --------------------GQVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 677
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEMFYSTKRQQFLIDQGY+FKVIT L ++ D
Sbjct: 678 RR-------NDEGFNAFFYSLVSKDTQEMFYSTKRQQFLIDQGYAFKVITHLDGLENLPD 730
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQ-------------LDEDADDIALHKARRIAGS 467
L Y DEQ+ L+ VL A + L +D + A+R G+
Sbjct: 731 LVYRTKDEQIELISSVLLANESEADLGSDIRATEGDLAGTVTSKDFGQMKFPGAQRTTGT 790
Query: 468 MSAMSGAQGMVYME 481
++A+SGAQ M Y+E
Sbjct: 791 LTALSGAQHMSYVE 804
>gi|321249760|ref|XP_003191564.1| general RNA polymerase II transcription factor [Cryptococcus gattii
WM276]
gi|317458031|gb|ADV19777.1| General RNA polymerase II transcription factor, putative
[Cryptococcus gattii WM276]
Length = 866
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 292/479 (60%), Positives = 352/479 (73%), Gaps = 11/479 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP+L+++LKP RPYQE SL+KMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 333 LEEYDFRNDTINPNLDIQLKPMTVIRPYQEMSLAKMFGNGRARSGIIVLPCGAGKTLVGI 392
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKKS L L T+AVSV QW QF +S I + QIC FT KE F +AG+V++TY
Sbjct: 393 TAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTSAGIVISTY 452
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK+++ +R+REWG LL+DEVHV PA MFRK I+ K H KLGLTATL
Sbjct: 453 SMIAKTGKRAHDAEKMMQFLRSREWGFLLLDEVHVTPADMFRKCINNFKVHAKLGLTATL 512
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED+RI DL +LIGPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 513 VREDDRIGDLGYLIGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 571
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI +HE RGDK+IVF+DN+FAL YA KL K I+G T E
Sbjct: 572 RILLHAMNPNKIQACQFLINYHE-SRGDKVIVFSDNVFALEAYAKKLGKSFIHGGTPEGE 630
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ LNTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 RLRILSRFQHDPQLNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKR 690
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DTQEMFYS+KRQ FLIDQGY+FKVIT L S +L
Sbjct: 691 R-------NDEGFNAFFYSLVSKDTQEMFYSSKRQGFLIDQGYAFKVITELHGLHSMPNL 743
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ DEQL+LL VL+ GD A E D +RIAG+ + SG+ +M
Sbjct: 744 VFPSKDEQLSLLESVLNQGDAAA--ETADHYMRLNGGKHLKRIAGAQPSTSGSTVQRFM 800
>gi|353237278|emb|CCA69255.1| probable SSL2-DNA helicase [Piriformospora indica DSM 11827]
Length = 837
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 289/492 (58%), Positives = 362/492 (73%), Gaps = 25/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND VNP+L+++LKP RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 320 MLEEYDFRNDKVNPNLDIDLKPATTIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 379
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKSCL L T++ + F + QI FT+D KE+F G++G+V++T
Sbjct: 380 ITAACTIKKSCLVLCTSS-----YVFFSTRSRVLTRIQISVFTADQKEKFSGDSGIVIST 434
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A RS ES+K+++ + +EWG LL+DEVHVVPA+MFRKV++ K+H KLGLTAT
Sbjct: 435 YHMIANTHNRSHESKKMMDFLTGQEWGFLLLDEVHVVPANMFRKVVTTIKAHSKLGLTAT 494
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED+++ DLN++IGPKLYEANW+DL K G IANVQCAEVWCPMT EF++EYL K++++
Sbjct: 495 LVREDDKVVDLNYMIGPKLYEANWMDLAKKGHIANVQCAEVWCPMTSEFYAEYL-KQDTR 553
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA +L K I+G T V
Sbjct: 554 KRMLLYCMNPEKFQACQFLIDYHE-RRGDKIIVFSDNVYALQAYAKRLNKMYIHGGTPQV 612
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ + NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 613 ERMRVLQHFQNNPLTNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 672
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YSTKRQQFLIDQGYSFKVIT L S +
Sbjct: 673 RR-------NDEGFNAFFYSLVSKDTQEMYYSTKRQQFLIDQGYSFKVITELDGMKSMPN 725
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGL-EQLDEDADDIA----------LHKARRIAGSMS 469
L Y DEQ+ L+ +VL+A D L + DD+A A+R S++
Sbjct: 726 LVYKTKDEQIELMQEVLTAKDSDADLGADVHGGEDDLAGTVTSKHFGFPGGAKRTTASLA 785
Query: 470 AMSGAQGMVYME 481
+SG M Y E
Sbjct: 786 GVSGGSHMSYRE 797
>gi|4150989|emb|CAA76655.1| XPB protein [Geodia cydonium]
Length = 810
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/507 (57%), Positives = 374/507 (73%), Gaps = 24/507 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+ ++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 310 LLAEYDFRNDTNNPDITIDLKPTTILRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 369
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L T+AV+V+QW QFKLWSTI + +CRFTSD+K++ N V ++T
Sbjct: 370 VTAACTVRKRCLVLCTSAVAVEQWRSQFKLWSTIDERLVCRFTSDAKDKPSPNTAVAIST 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MVA+ KR+ +S++++ ++ +EWGL+++DEV +PA FR+ +++ ++H KLGLTAT
Sbjct: 430 YAMVAYTQKRAWDSQQMMNFLQQQEWGLMILDEVQTIPADKFRRTLAVVQAHTKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L GFIA VQCAEVWCPMT EF+SEYLK + ++
Sbjct: 490 LVREDDKIQDLNFLIGPKLYEANWMELQNNGFIAKVQCAEVWCPMTPEFYSEYLKIK-TR 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K+ LYVMNPNKFRAC+FL++ HE QR DKII+F+D +F+L YA +L KP I G T+
Sbjct: 549 RKKLLYVMNPNKFRACQFLMKHHE-QRNDKIIIFSDVVFSLRTYAKRLNKPFIDGQTNQQ 607
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER K+LQ FK + +NTI +SKVGDNS D+P+ANV+ +IS+H GSRRQEAQRLG ILRAK
Sbjct: 608 ERMKVLQNFKHNPLVNTILISKVGDNSFDLPDANVLWKISAHGGSRRQEAQRLGGILRAK 667
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+D ++ EEYNAFFYSLVS DT+EM +STKRQ+FL++QGYSFKV++ L D +
Sbjct: 668 ---KDSVS---EEYNAFFYSLVSQDTEEMHFSTKRQRFLVNQGYSFKVVSKLGIEDEPS- 720
Query: 421 LSYHRLDEQLALLGKVLSAGD-DA-------------VGLEQLDEDADDIALHKARRIAG 466
LS EQ LL +VLSA D DA G+ + +RR AG
Sbjct: 721 LSLATKKEQAELLQEVLSASDADAEEEGSSGAGKQGGSGMAGALLSSSSSGGGVSRR-AG 779
Query: 467 SMSAMSGAQGMVYMEYRYDPWQKQLFK 493
SM++MSG MVYMEYR Q LFK
Sbjct: 780 SMASMSGGDDMVYMEYRTSRPQHPLFK 806
>gi|405117967|gb|AFR92742.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii H99]
Length = 866
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 292/479 (60%), Positives = 351/479 (73%), Gaps = 11/479 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP+L+++LKP RPYQE SL+KMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 333 LEEYDFRNDTINPNLDIQLKPMTVIRPYQEMSLAKMFGNGRARSGIIVLPCGAGKTLVGI 392
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKKS L L T+AVSV QW QF +S I + QIC FT KE F +AG+V++TY
Sbjct: 393 TAACTIKKSALVLCTSAVSVAQWKQQFLHFSNISERQICAFTQGEKEMFSTSAGIVISTY 452
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK+++ +R+REWG LL+DEVHV PA MFRK I+ K H KLGLTATL
Sbjct: 453 SMIAKTGKRAHDAEKMMQFLRSREWGFLLLDEVHVTPADMFRKCINNFKVHAKLGLTATL 512
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED+RI DL +LIGPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 513 VREDDRIGDLGYLIGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 571
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI +HE RGDK+IVF+DN+FAL YA KL K I+G T E
Sbjct: 572 RILLHAMNPNKIQACQFLINYHE-SRGDKVIVFSDNVFALEAYAKKLGKSFIHGGTPEGE 630
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ LNTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 RLRILSRFQHDPQLNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKR 690
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DTQEMFYS+KRQ FLIDQGY+FKVIT L S +L
Sbjct: 691 R-------NDEGFNAFFYSLVSKDTQEMFYSSKRQGFLIDQGYAFKVITELHGLHSMPNL 743
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ DEQL+LL VL+ GD A E D +RIAG+ + SG +M
Sbjct: 744 VFPSKDEQLSLLESVLNQGDAAA--ETADHYMRLNGGKHLKRIAGAQPSTSGMTVQRFM 800
>gi|358332745|dbj|GAA39781.2| DNA excision repair protein ERCC-3 [Clonorchis sinensis]
Length = 931
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 284/510 (55%), Positives = 372/510 (72%), Gaps = 16/510 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D +N D+ ++LK RPYQE+SL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 430 LLAEYDFRQDKINKDIAIDLKASTSLRPYQERSLRKMFGNGRARSGVIVLPCGAGKTLVG 489
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC I+K L T+ V+V+QW QF+LWSTI+D QI RFTSD+K+R +A V ++T
Sbjct: 490 VTAACTIRKPTFVLGTSGVAVEQWRSQFRLWSTIEDSQILRFTSDAKDRPSTSACVCIST 549
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A KRS E+++++E I+ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 550 YTMIAHSTKRSYEADRMMEWIKGQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 609
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANWL+L + GFIA VQCAEVWCP+T EF+ EYL + S
Sbjct: 610 LVREDDKITDLNFLIGPKLYEANWLELQQRGFIARVQCAEVWCPVTPEFYREYLNMK-SM 668
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L VMNPNKFRACEFLIR+HE +R DKIIVF+DN+FAL YAMK+ +P +YG TS
Sbjct: 669 KKLLLAVMNPNKFRACEFLIRYHE-RRNDKIIVFSDNVFALKYYAMKMGRPYLYGPTSQA 727
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F+ + ++ IF+SKV DNS D+PEA V+IQIS+H GSRRQEAQRLGRILRAK
Sbjct: 728 ERMQVLQNFQHNPNVPAIFVSKVADNSFDLPEATVLIQISAHGGSRRQEAQRLGRILRAK 787
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
++ E YNAFFYSLVS DT EM Y+ KRQ+FL++QGY++KVIT L ++
Sbjct: 788 RGMD------AEAYNAFFYSLVSQDTMEMQYALKRQRFLVNQGYAYKVITRLAGMEN-EP 840
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA-------LHKARRIAGSMSAMSG 473
L EQ LL +VL++ ++ E+L D DD+ + A R A M+++SG
Sbjct: 841 LKLSTKQEQAELLHRVLASTEEDAMEERLPTDPDDVTGLKRTAPVGSAVRKASRMASLSG 900
Query: 474 AQGMVYMEYRYDPWQKQLFKASSQIFFSFQ 503
A +YM+ +K K +F F+
Sbjct: 901 ADDAIYMDTSSAASRKDKSKERHPLFRLFR 930
>gi|219119406|ref|XP_002180464.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407937|gb|EEC47872.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 720
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 290/511 (56%), Positives = 374/511 (73%), Gaps = 25/511 (4%)
Query: 1 MLEEYDFRNDNVNPDL-NMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 59
++EEYDFRND +NP++ M+LKPH + R YQE+SL+KMFGNGRARSGIIVLPCGAGK+L
Sbjct: 212 LMEEYDFRNDTMNPNVPRMDLKPHTRIRRYQERSLAKMFGNGRARSGIIVLPCGAGKTLT 271
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119
GV+AA IKKS +CL TNAVSV QW +QF+LW++I D+ I FTSD K++ + V+VT
Sbjct: 272 GVTAAQTIKKSVVCLCTNAVSVLQWKYQFQLWTSIPDEHIAVFTSDHKDKL-VDPCVLVT 330
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY M+++ GKRS +S++I+++I +REWGLLLMDEVHVVPA MFR+V+ K+HC+LGLTA
Sbjct: 331 TYTMISYSGKRSAQSQEIMDQITSREWGLLLMDEVHVVPAKMFRRVVGSVKAHCRLGLTA 390
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVRED+ I+DLNFLIGPKLYEANW+DL G++ANVQC EVWCPMT F EYL NS
Sbjct: 391 TLVREDDLISDLNFLIGPKLYEANWMDLTAQGYLANVQCVEVWCPMTGPFMKEYLMASNS 450
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+ KQ LYVMNP+K RA +FL+RFHE RGDKIIVF+D +++L YA L+KP+IYG T
Sbjct: 451 RLKQLLYVMNPSKLRAVDFLVRFHE-ARGDKIIVFSDLVYSLKLYAEMLKKPLIYGETPE 509
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER IL F+ S + TI +SKVGD SID+PEANVIIQ+SSH GSRRQEAQRLGRILR
Sbjct: 510 RERQAILGTFRASDAVRTICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRP 569
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL-PPPDSG 418
K + + +NAFFY+LVS+DTQEMFYS KRQQ+LIDQGY+FK++T+L D+
Sbjct: 570 KSYTQQD-GSNRSTFNAFFYTLVSSDTQEMFYSAKRQQYLIDQGYTFKIVTNLCEKADAE 628
Query: 419 A---DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-----------ARRI 464
A ++ ++ LL VL++ D LE+ ++ A+D A+ K A +
Sbjct: 629 AIANGCTFATPEDDRKLLRTVLTSETD---LEK-EQRAEDTAIRKNNTDGAALADAASKK 684
Query: 465 AGSMSAMSGAQGMVYMEYRYD--PWQKQLFK 493
SM+ +SG G+ Y E+ P + LF+
Sbjct: 685 TTSMAQLSGGTGLRYKEFSSSGLPKRHPLFR 715
>gi|367027018|ref|XP_003662793.1| hypothetical protein MYCTH_2303821 [Myceliophthora thermophila ATCC
42464]
gi|347010062|gb|AEO57548.1| hypothetical protein MYCTH_2303821 [Myceliophthora thermophila ATCC
42464]
Length = 863
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/499 (56%), Positives = 369/499 (73%), Gaps = 30/499 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+VNP+L ++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 335 ILEEYDFRNDDVNPNLEIDLRPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 394
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FT++SK++F G+ G++VTT
Sbjct: 395 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAIFTAESKQKFSGSTGIIVTT 454
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +R REWGL+L+DEVHVVPA MFR+VIS KSH KLGLTAT
Sbjct: 455 YSMVTNSRERSHDSKKMMDFLRGREWGLMLLDEVHVVPAEMFRRVISSIKSHSKLGLTAT 514
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ EYL+ N++
Sbjct: 515 LLREDDKISHLNFLIGPKLYEANWMELSQQGHIAKVQCAEVWCPMPTEFYDEYLRA-NAR 573
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL+K IYG TS
Sbjct: 574 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLKKVFIYGGTSQA 632
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 633 ERMQVLENFQHNPEVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 692
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L + D
Sbjct: 693 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEKTPD 745
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI------------------ALHKAR 462
L++ E LL + L D+ G+E D + DD+ + R
Sbjct: 746 LAFATPQECRELLQRTLV--DNERGVED-DVETDDLFGKTGRSRGAGSGNGVKKPGNGVR 802
Query: 463 RIAGSMSAMSGAQGMVYME 481
R AG +S ++G Q M Y+E
Sbjct: 803 RTAGMLSELAGGQDMAYIE 821
>gi|171686848|ref|XP_001908365.1| hypothetical protein [Podospora anserina S mat+]
gi|170943385|emb|CAP69038.1| unnamed protein product [Podospora anserina S mat+]
Length = 859
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 282/498 (56%), Positives = 366/498 (73%), Gaps = 29/498 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRNDNVNP+L ++L+P+ RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 333 ILEEYDFRNDNVNPNLEIDLRPNTLIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+K + L T+++SV QW +F WS I + I FT+DSK +F G+ G++VTT
Sbjct: 393 ITAACTIRKGVIVLCTSSMSVVQWRQEFLKWSNINPEDIAVFTADSKNKFSGSTGIIVTT 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +R REWGL+L+DEVHVVPA +FR+VIS KSH KLGLTAT
Sbjct: 453 YSMVTNSRERSHDSKKMMDFLRGREWGLMLLDEVHVVPADVFRRVISSIKSHSKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+ LNFLIGPKLYEANW++L + G IA VQCAEVWC M EF+ EYL+ NS
Sbjct: 513 LLREDDKISHLNFLIGPKLYEANWMELSQQGHIAKVQCAEVWCSMPPEFYDEYLRA-NSH 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL+K IYG T
Sbjct: 572 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLKKVFIYGGTGQA 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + D+NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERMQVLENFQHNPDVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L + D
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANINDTPD 743
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-----------------ALHKARR 463
L++ E+ LL + L D+ G EQ D + DD+ A + RR
Sbjct: 744 LAFATPQERRELLQRTLV--DNEKGFEQ-DAETDDLFGKPSGRRGAGGARGRKAGNGVRR 800
Query: 464 IAGSMSAMSGAQGMVYME 481
AG++ +SG Q M Y+E
Sbjct: 801 TAGTLGELSGGQDMAYIE 818
>gi|367050828|ref|XP_003655793.1| hypothetical protein THITE_2119890 [Thielavia terrestris NRRL 8126]
gi|347003057|gb|AEO69457.1| hypothetical protein THITE_2119890 [Thielavia terrestris NRRL 8126]
Length = 861
Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust.
Identities = 279/493 (56%), Positives = 366/493 (74%), Gaps = 21/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+VNP+L ++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 335 ILEEYDFRNDDVNPNLEIDLRPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 394
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FT++SK +F G+ G++VTT
Sbjct: 395 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAIFTAESKNKFSGSTGIIVTT 454
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +R REWGL+L+DEVHVVPA MFR+VIS KSH KLGLTAT
Sbjct: 455 YSMVTNSRERSHDSKKMMDFLRGREWGLMLLDEVHVVPAEMFRRVISSIKSHSKLGLTAT 514
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED+RI+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ EYL+ +++
Sbjct: 515 LLREDDRISHLNFLIGPKLYEANWMELSQQGHIAKVQCAEVWCPMPTEFYDEYLRA-SAR 573
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL+K IYG TS
Sbjct: 574 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLKKVFIYGGTSQA 632
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 633 ERMQVLENFQHNPEVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 692
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L + D
Sbjct: 693 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEQTPD 745
Query: 421 LSYHRLDEQLALLGKVL----SAGDDAVGLEQL--------DEDADDIALHKARRIAGSM 468
L++ E LL + L G+D + + L + + + RR AG +
Sbjct: 746 LAFATPQECRELLQRTLVDNEKGGEDDIETDDLFGKSRGGNGRNKKLLPGNGVRRTAGML 805
Query: 469 SAMSGAQGMVYME 481
+ +SG Q M Y+E
Sbjct: 806 AELSGGQDMAYIE 818
>gi|345568577|gb|EGX51470.1| hypothetical protein AOL_s00054g169 [Arthrobotrys oligospora ATCC
24927]
Length = 838
Score = 573 bits (1477), Expect = e-161, Method: Compositional matrix adjust.
Identities = 283/492 (57%), Positives = 359/492 (72%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N +L+M+L+P AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 323 LLEEYDFRNDSRNANLDMDLRPQAQIRHYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 382
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T+++SV QW +F WSTI DQI FT+++KERFRG+AG++VTT
Sbjct: 383 ITAACTIKKSVVVLCTSSMSVVQWRNEFLKWSTINPDQIAIFTAENKERFRGDAGIIVTT 442
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV RS +S+K+++ + REWGLLL+DEVHVVPA++FRKVI +H KLGLTAT
Sbjct: 443 YSMVTNSRTRSHDSQKMMDFLMGREWGLLLLDEVHVVPANIFRKVIHSIATHAKLGLTAT 502
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+ EYL E +
Sbjct: 503 LLREDDKIQDLNFLIGPKLYEANWMELSEQGHIARVQCAEVWCPMTTEFYQEYL-NETPR 561
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ Y+MNP KF+AC+FLI +HE +RGDK+IVF+DN+FAL YA KL KP IYG T
Sbjct: 562 KRALFYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVFALAAYARKLNKPYIYGGTPQQ 620
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KILQ F+ + +NT+FLSK+GD S+D+PEA +IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 621 ERLKILQNFQRNELINTVFLSKIGDTSLDLPEATCLIQVSSHYGSRRQEAQRLGRILRAK 680
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++
Sbjct: 681 RR-------NDEGFNAFFYSLVSKDTAEMYYSSKRQAFLVDQGYAFKVITHLQGIENLPG 733
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR-----------RIAGSMS 469
L+Y E+ LL VL + ++++ D + R R +S
Sbjct: 734 LAYATPAERRELLQSVLLENSQNADVNSIEKETDGGFFDRTRGDYKRSGPLVKRNNAKLS 793
Query: 470 AMSGAQGMVYME 481
+SG M YME
Sbjct: 794 GLSGGDTMAYME 805
>gi|268572763|ref|XP_002641406.1| Hypothetical protein CBG13269 [Caenorhabditis briggsae]
Length = 789
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 280/484 (57%), Positives = 360/484 (74%), Gaps = 16/484 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NP+L ++LKP RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 298 LLAEYDFRNDTMNPNLGIDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 357
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+A + K CL LA + VSV+QW QFKLWSTIQD Q+ RFT ++K+ A
Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATKPV 417
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ G+R+ ++E+ ++ I +EWGLLL+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 418 VCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMFRRVLTIVQAHCKL 477
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPMT F+S YL+
Sbjct: 478 GLTATLVREDDKITDLNFLIGPKIYEANWMELQKAGHIAKVQCAEVWCPMTSAFYSYYLR 537
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ + +K L VMNPNKFR C+FLI+FHE +R DKIIVF+DN+FAL YA++++KP +YG
Sbjct: 538 SQIA-RKLLLAVMNPNKFRICQFLIKFHE-RRNDKIIVFSDNVFALKRYAIEMQKPFLYG 595
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
TS ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+H GSRRQEAQRLGR
Sbjct: 596 ETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGR 655
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
ILRAK D ++NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ LP
Sbjct: 656 ILRAKKHSTD-------QFNAFFYSLVSQDTVEMGYSRKRQRFLVNQGYAYKVVNRLPGM 708
Query: 416 DSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQ 475
+ DL + QL LL +VL+ D E + E+ D + ARR A +M++MSG Q
Sbjct: 709 EQ-EDLKLATKESQLQLLSQVLATSDADAEEEDIKEELADGTIRVARREA-TMASMSGGQ 766
Query: 476 GMVY 479
G Y
Sbjct: 767 GAQY 770
>gi|154285310|ref|XP_001543450.1| hypothetical protein HCAG_00496 [Ajellomyces capsulatus NAm1]
gi|150407091|gb|EDN02632.1| hypothetical protein HCAG_00496 [Ajellomyces capsulatus NAm1]
Length = 750
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/492 (56%), Positives = 367/492 (74%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 231 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 290
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR N G++V+TY
Sbjct: 291 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRNTGIIVSTY 350
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 351 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 410
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 411 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 469
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 470 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 528
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 529 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 588
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 589 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 641
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR---------RIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D ++ KAR R A ++S
Sbjct: 642 AYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPKARGAAKKVAVKRSAATLSG 701
Query: 471 MSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 702 LAGGEDMAYIEY 713
>gi|225557061|gb|EEH05348.1| DNA repair helicase RAD25 [Ajellomyces capsulatus G186AR]
Length = 833
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 279/492 (56%), Positives = 367/492 (74%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 314 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 373
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR N G++V+TY
Sbjct: 374 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRNTGIIVSTY 433
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 434 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 493
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 494 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 552
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 553 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 611
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 612 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 671
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 672 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 724
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR---------RIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D ++ KAR R A ++S
Sbjct: 725 AYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPKARGAAKRVAVKRSAATLSG 784
Query: 471 MSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 785 LAGGEDMAYIEY 796
>gi|391336830|ref|XP_003742781.1| PREDICTED: DNA excision repair protein haywire-like [Metaseiulus
occidentalis]
Length = 775
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 281/484 (58%), Positives = 358/484 (73%), Gaps = 18/484 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF+ND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSL G
Sbjct: 289 LLAEYDFKNDTHNPDINVDLKPSALLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLTG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K CL L + VSV+QW QFK+WST D ICRFTS++K++ G G+ +TT
Sbjct: 349 VTACCTVRKRCLVLCNSGVSVEQWKAQFKMWSTADDSMICRFTSEAKDKPVG-CGICITT 407
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+ KRS E E++++ ++ +EWG++L+DEVH +PA MFR+V++L ++HCKLGLTAT
Sbjct: 408 YAMITHTQKRSWEGEQVMQWLKEQEWGIMLLDEVHTIPAKMFRRVLTLVQAHCKLGLTAT 467
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPK+YEANWL+L K GFIA V C+EVWCPMT EF+ EYL + +
Sbjct: 468 LVREDDKIADLNFLIGPKIYEANWLELQKAGFIAKVACSEVWCPMTPEFYREYLTAK-AA 526
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L+VMNPNKF+ C++LI++HE +R DKIIVF+DN+FAL +A KLRKP I+G TS
Sbjct: 527 KKLLLFVMNPNKFQICQYLIQYHE-RRKDKIIVFSDNVFALKHFAEKLRKPFIFGPTSQA 585
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQIS+H GSRRQEAQRLGRILRAK
Sbjct: 586 ERMQILQNFKYNPMVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGRILRAK 645
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
K NAFFYSLVS DT EM +S KRQ+FL++QGYS+KVIT L +
Sbjct: 646 ----------KGACNAFFYSLVSQDTMEMHFSRKRQRFLVNQGYSYKVITKLEGLQTEEG 695
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQ-GMVY 479
+ Y EQL LL +V+ AG+D V + D A+ + +R G + +SGA G VY
Sbjct: 696 ILYRSKTEQLRLLSQVMQAGEDEVEIIPGDSGAE----ARTQRRLGGIGGLSGADMGDVY 751
Query: 480 MEYR 483
E R
Sbjct: 752 AEVR 755
>gi|115433138|ref|XP_001216706.1| DNA repair helicase RAD25 [Aspergillus terreus NIH2624]
gi|114189558|gb|EAU31258.1| DNA repair helicase RAD25 [Aspergillus terreus NIH2624]
Length = 839
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/487 (57%), Positives = 364/487 (74%), Gaps = 15/487 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 319 LEEYDFRNDEINPTLDIDLKPNARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 378
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 379 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAIFTSDNKEKFRRSTGIIVSTY 438
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 439 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATL 498
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 499 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 557
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 558 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 616
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 617 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 676
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 677 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 729
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED------ADDIALHKARRIAGSMSAMSGAQ 475
+Y E+ LL +V+ + + +E + +D A A RR A ++S ++G +
Sbjct: 730 AYATPGERRELLQEVMLQNETSAEVEHVTDDLFSAGGAKGKAKGAVRRSAATLSGLAGGE 789
Query: 476 GMVYMEY 482
M Y+EY
Sbjct: 790 DMAYIEY 796
>gi|325093694|gb|EGC47004.1| DNA repair helicase RAD25 [Ajellomyces capsulatus H88]
Length = 1416
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 279/492 (56%), Positives = 367/492 (74%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 269 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 328
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR N G++V+TY
Sbjct: 329 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRNTGIIVSTY 388
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 389 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 448
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 449 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 507
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 508 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 566
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 567 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 626
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 627 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 679
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR---------RIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D ++ KAR R A ++S
Sbjct: 680 AYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPKARGAAKKVAVKRSAATLSG 739
Query: 471 MSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 740 LAGGEDMAYIEY 751
>gi|904101|gb|AAA74931.1| helicase [Drosophila melanogaster]
Length = 801
Score = 568 bits (1465), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/492 (57%), Positives = 359/492 (72%), Gaps = 26/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 311 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 371 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 429
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 430 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 489
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA QCAEVWCPM+ EF+ EYL + S
Sbjct: 490 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARCQCAEVWCPMSPEFYREYLTTKTS- 548
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LYV NP+KFR+C+FLI++HE QRGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 549 KKMLLYV-NPSKFRSCQFLIKYHE-QRGDKTIVFSDNVFALKHYAIKMNKPFIYGPTSQN 606
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRL RILRAK
Sbjct: 607 ERIQILQNFKFNSKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLVRILRAK 666
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS KR +FL++QG +KVIT L D+ +D
Sbjct: 667 ------KGAIAEEYNAFFYTLVSQDTMEMSYSRKRHRFLVNQGICYKVITHLKGMDTDSD 720
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGS---------MSAM 471
L Y +EQ LL VLSA D LD + + + R +GS +S+M
Sbjct: 721 LMYGTQEEQGQLLQLVLSASD-------LDCEDEKLPGEPGYRPSGSGGIVRRVGGLSSM 773
Query: 472 SGAQGMVYMEYR 483
SG +Y E+R
Sbjct: 774 SGGDDAIYYEHR 785
>gi|313230223|emb|CBY07927.1| unnamed protein product [Oikopleura dioica]
Length = 792
Score = 568 bits (1464), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/484 (56%), Positives = 353/484 (72%), Gaps = 11/484 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND PDL ++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+L G
Sbjct: 297 LLAEYDFRNDKNIPDLPIDLKPTTTLRPYQEKSLKKMFGNGRARSGVIVLPCGAGKTLTG 356
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A ++K C+ L T+ V+V+QW QFK+WST DD ICRFTSD+K++ + +V++T
Sbjct: 357 VTACTTVRKRCVILCTSGVAVEQWKNQFKMWSTATDDMICRFTSDAKDKPHAGSSIVIST 416
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+EK++ +R++EWG++++DEVH +PA FR+V+++ +HCKLGLTAT
Sbjct: 417 YSMMGHTMKRSYEAEKLMAWLRDQEWGMIVLDEVHTIPAKQFRRVLTVISAHCKLGLTAT 476
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANW++L G++A VQCAEVWCPM+ EF+ EYL + ++
Sbjct: 477 LVREDDKITDLNFLIGPKLYEANWMELWNNGYLARVQCAEVWCPMSPEFYREYLNCK-TR 535
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ +YVMNPNKFR CEFL+R+HE R DKIIVF+DN+FAL EYA K+ P I+G T+
Sbjct: 536 KRILIYVMNPNKFRTCEFLVRYHE-ARKDKIIVFSDNVFALVEYAKKMGAPFIHGPTAQH 594
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KI+Q FK + TIF+SKVGDNS D+P+ANV+IQI+SH GSRRQEAQRLGRILRAK
Sbjct: 595 ERMKIIQNFKYNPAFPTIFISKVGDNSFDMPDANVLIQIASHGGSRRQEAQRLGRILRAK 654
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
E NA+FYSLVS DT+EM YSTKRQ+FL++QGY+FK+IT LP
Sbjct: 655 ------KGSNPNEVNAYFYSLVSQDTKEMAYSTKRQRFLVNQGYAFKIITELPGLKEDMS 708
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRI---AGSMSAMSGAQGM 477
LS+ +EQ LL +VL+A D E + + A K I AG MSGA
Sbjct: 709 LSFSTREEQQVLLQRVLAANDADADEESMPSEFHSNAGGKRGNIVRRAGGFGQMSGADSR 768
Query: 478 VYME 481
Y E
Sbjct: 769 HYTE 772
>gi|336271467|ref|XP_003350492.1| hypothetical protein SMAC_02205 [Sordaria macrospora k-hell]
gi|380090156|emb|CCC11983.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 867
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/494 (56%), Positives = 364/494 (73%), Gaps = 25/494 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N DL ++L+P+ Q RPYQE+SLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 344 ILEEYDFRNDSNNADLEIDLRPNTQIRPYQEQSLSKMFGNGRAKSGIIVLPCGAGKTLVG 403
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FT++SK +F GN G++VTT
Sbjct: 404 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTAESKNKFSGNTGIIVTT 463
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +++REWGL+L+DEVHVVPA +FR+VIS KSH KLGLTAT
Sbjct: 464 YSMVTNNRERSHDSKKMMDFLKSREWGLMLLDEVHVVPADVFRRVISSIKSHSKLGLTAT 523
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ EYL+ NS+
Sbjct: 524 LLREDDKISHLNFLIGPKLYEANWMELSEKGHIAKVQCAEVWCPMPTEFYDEYLRA-NSR 582
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL K IYG T
Sbjct: 583 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLNKVFIYGGTGQA 641
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 642 ERMQVLENFQHNPAVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 701
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L ++ D
Sbjct: 702 RR-------NDVGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIENTPD 754
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-------------ALHKARRIAGS 467
L++ E+ LL + L D+ G E D + DD+ RR+AG+
Sbjct: 755 LAFATAQERRELLQRTLV--DNEKGTED-DVETDDLFGKVGRGRGGAKGRAAAVRRMAGT 811
Query: 468 MSAMSGAQGMVYME 481
+ +SG Q M Y+E
Sbjct: 812 LGELSGGQDMAYIE 825
>gi|406700028|gb|EKD03215.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 8904]
Length = 874
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/442 (62%), Positives = 341/442 (77%), Gaps = 9/442 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND++NPDL+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 323 LEEYDFRNDHINPDLDIQLKPMTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVGI 382
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC I+KS L L T+AVSV QW QF +S I + QIC FT KE F+G +G+V++TY
Sbjct: 383 TAACTIRKSALVLCTSAVSVAQWKQQFLQFSNISERQICAFTQGEKEIFQGPSGIVISTY 442
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK++ +R+REWG LL+DEVHV PA +FRK +S K H KLGLTATL
Sbjct: 443 SMIAKTGKRAHDAEKVMNWLRSREWGFLLLDEVHVAPAALFRKCVSSFKVHTKLGLTATL 502
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED++I DL++LIGPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 503 VREDDKIGDLSYLIGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 561
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI++HE RGDKIIVF+DN++AL YA +L KP I+G T E
Sbjct: 562 RILLHAMNPNKMQACQFLIKYHE-DRGDKIIVFSDNIYALEAYATRLGKPFIHGGTPEGE 620
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ + LNTIFLS VGD SID+PEA +IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 621 RLRILSWFQHNPKLNTIFLSSVGDTSIDLPEATCLIQVSSHFGSRRQEAQRLGRILRAKR 680
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKVIT L D L
Sbjct: 681 R-------NDEGFNAFFYSLVSKDTQEMYYSSKRQGFLIDQGYAFKVITELHGIDKMDGL 733
Query: 422 SYHRLDEQLALLGKVLSAGDDA 443
+ ++Q+ LL ++L+ G DA
Sbjct: 734 LFANKNDQIGLLEEILNTGSDA 755
>gi|295667028|ref|XP_002794064.1| DNA repair helicase RAD25 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226277717|gb|EEH33283.1| DNA repair helicase RAD25 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 832
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/492 (56%), Positives = 367/492 (74%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 313 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 372
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+F+ + G++V+TY
Sbjct: 373 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFKRSTGIIVSTY 432
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWGL+L+DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 433 SMVSQTRARSHDAQKMMDWLQSREWGLMLLDEVHVVPASMFRKVTSAIATQAKLGLTATL 492
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 493 LREDDKIKDLNFLIGPKLYEANWMELSEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 551
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 552 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 610
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 611 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 670
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 671 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 723
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED---------ADDIALHKA--RRIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D A +KA RR A ++S
Sbjct: 724 AYATPGERRELLQEVMLQNETSAAVEEVVDDLFSGRSGGPKSRAATNKAAVRRSAATLSG 783
Query: 471 MSGAQGMVYMEY 482
++G + M Y+E+
Sbjct: 784 LAGGEDMAYIEH 795
>gi|401883704|gb|EJT47899.1| general RNA polymerase II transcription factor [Trichosporon asahii
var. asahii CBS 2479]
Length = 874
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/442 (62%), Positives = 341/442 (77%), Gaps = 9/442 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND++NPDL+++LKP RPYQE SLSKMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 323 LEEYDFRNDHINPDLDIQLKPMTVIRPYQETSLSKMFGNGRARSGIIVLPCGAGKTLVGI 382
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC I+KS L L T+AVSV QW QF +S I + QIC FT KE F+G +G+V++TY
Sbjct: 383 TAACTIRKSALVLCTSAVSVAQWKQQFLQFSNISERQICAFTQGEKEIFQGPSGIVISTY 442
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK++ +R+REWG LL+DEVHV PA +FRK +S K H KLGLTATL
Sbjct: 443 SMIAKTGKRAHDAEKVMNWLRSREWGFLLLDEVHVAPAALFRKCVSSFKVHTKLGLTATL 502
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED++I DL++LIGPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 503 VREDDKIGDLSYLIGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 561
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI++HE RGDKIIVF+DN++AL YA +L KP I+G T E
Sbjct: 562 RILLHAMNPNKMQACQFLIKYHE-DRGDKIIVFSDNIYALEAYATRLGKPFIHGGTPEGE 620
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ + LNTIFLS VGD SID+PEA +IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 621 RLRILSWFQHNPKLNTIFLSSVGDTSIDLPEATCLIQVSSHFGSRRQEAQRLGRILRAKR 680
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DTQEM+YS+KRQ FLIDQGY+FKVIT L D L
Sbjct: 681 R-------NDEGFNAFFYSLVSKDTQEMYYSSKRQGFLIDQGYAFKVITELHGIDKMDGL 733
Query: 422 SYHRLDEQLALLGKVLSAGDDA 443
+ ++Q+ LL ++L+ G DA
Sbjct: 734 LFANKNDQIGLLEEILNTGSDA 755
>gi|85084541|ref|XP_957329.1| DNA repair helicase RAD25 [Neurospora crassa OR74A]
gi|28918419|gb|EAA28093.1| DNA repair helicase RAD25 [Neurospora crassa OR74A]
Length = 862
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 278/494 (56%), Positives = 364/494 (73%), Gaps = 25/494 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N DL ++L+P+ Q RPYQE+SLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 341 ILEEYDFRNDSNNADLEIDLRPNTQIRPYQEQSLSKMFGNGRAKSGIIVLPCGAGKTLVG 400
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FT++SK +F GN G++VTT
Sbjct: 401 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTAESKNKFSGNTGIIVTT 460
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +++REWGL+L+DEVHVVPA +FR+VIS KSH KLGLTAT
Sbjct: 461 YSMVTNNRERSHDSKKMMDFLKSREWGLMLLDEVHVVPADVFRRVISSIKSHSKLGLTAT 520
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ EYL+ NS+
Sbjct: 521 LLREDDKISHLNFLIGPKLYEANWMELSEKGHIAKVQCAEVWCPMPTEFYDEYLRA-NSR 579
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL K IYG T
Sbjct: 580 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLNKVFIYGGTGQA 638
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 639 ERMQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 698
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L ++ D
Sbjct: 699 RR-------NDVGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIENTPD 751
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-------------ALHKARRIAGS 467
L++ E+ LL + L D+ G E D + DD+ RR+AG+
Sbjct: 752 LAFATAQERRELLQRTLV--DNEKGAED-DVETDDLFGKVGRGRGGAKGRAAAVRRMAGT 808
Query: 468 MSAMSGAQGMVYME 481
+ +SG Q M Y+E
Sbjct: 809 LGELSGGQDMAYIE 822
>gi|308483808|ref|XP_003104105.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
gi|308258413|gb|EFP02366.1| hypothetical protein CRE_01011 [Caenorhabditis remanei]
Length = 797
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 281/497 (56%), Positives = 360/497 (72%), Gaps = 28/497 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NP+L ++LKP RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 292 LLAEYDFRNDTMNPNLGIDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+A + K CL LA + VSV+QW QFKLWSTIQD Q+ RFT ++K+ A
Sbjct: 352 VTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATKPV 411
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ G+R+ ++E+ ++ I +EWGLLL+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 412 VCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMFRRVLTIVQAHCKL 471
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPMT F+S YL+
Sbjct: 472 GLTATLVREDDKITDLNFLIGPKIYEANWMELQKAGHIAKVQCAEVWCPMTSAFYSYYLR 531
Query: 236 -------------KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
+ +K L VMNPNKFR C+FLI+FHE +R DKIIVF+DN+FAL
Sbjct: 532 FFIRYPLNLNIFFRSQIARKLLLAVMNPNKFRICQFLIKFHE-RRNDKIIVFSDNVFALK 590
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
YA++++KP +YG TS ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+H
Sbjct: 591 RYAIEMQKPFLYGETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPEANVLIQISAH 650
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQEAQRLGRILRAK D ++NAFFYSLVS DT EM YS KRQ+FL++Q
Sbjct: 651 GGSRRQEAQRLGRILRAKKHSTD-------QFNAFFYSLVSQDTVEMGYSRKRQRFLVNQ 703
Query: 403 GYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR 462
GY++KV+ LP +S DL + QL LL +VL+ D E + E+ D + AR
Sbjct: 704 GYAYKVVNKLPGMES-EDLKLATKESQLQLLSQVLATSDADAEEEDIKEELADGTIRIAR 762
Query: 463 RIAGSMSAMSGAQGMVY 479
R A +M++MSG QG Y
Sbjct: 763 REA-TMASMSGGQGAQY 778
>gi|398393830|ref|XP_003850374.1| hypothetical protein MYCGRDRAFT_110466 [Zymoseptoria tritici
IPO323]
gi|339470252|gb|EGP85350.1| hypothetical protein MYCGRDRAFT_110466 [Zymoseptoria tritici
IPO323]
Length = 853
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 276/507 (54%), Positives = 366/507 (72%), Gaps = 16/507 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDFR D++N L+++L+P+ Q R YQE +LSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 336 LTEEYDFRADDINATLDIDLRPNVQIRYYQEHALSKMFGNGRARSGIIVLPCGAGKTLVG 395
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+S QW +FK WS I + I FTS KE+ AGV++ T
Sbjct: 396 ITAACTVKKSAIVLCTSAMSAVQWKEEFKKWSNINPEDIAIFTSGEKEKLNHKAGVIICT 455
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +R+ +S+++++ I +REWGL+++DEVHVVPA MFR+V K+H KLGLTAT
Sbjct: 456 YSMVTQNTRRAHDSKQVMDFITSREWGLMVLDEVHVVPADMFRRVTERIKTHSKLGLTAT 515
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL L + G IA VQCAEVWCPMT EF+SEYL+ + +
Sbjct: 516 LLREDDKIKDLNFLIGPKLYEANWLQLSEEGHIARVQCAEVWCPMTTEFYSEYLQAKTTN 575
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L MNP K++AC+FLI FHE +RGDK+IVF+DN++AL +YA + KP IYG TS
Sbjct: 576 KRSLLSTMNPRKYQACQFLIDFHE-RRGDKVIVFSDNVYALEKYATGMTKPYIYGDTSQR 634
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +LQ F+ + ++T+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 635 EREVVLQNFQQNDAVSTVFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 694
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L D +
Sbjct: 695 RR-------NDEGFNAFFYSLVSKDTNEMYYSSKRQAFLVDQGYAFKVITHLNGIDRMPN 747
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHK-----ARRIAGSMSAMS 472
L+++ +E++ LL VL D G+E + +D + A K RR AG++S+++
Sbjct: 748 LAFNTQNERMTLLQDVLIQSDTTGGVEDIQDDLFSDKNQARQKKKGSGVRRQAGTLSSLA 807
Query: 473 GAQGMVYMEYRYDPWQKQLFKASSQIF 499
G + M YMEY + K L K + F
Sbjct: 808 GGEDMAYMEYSKNNANKALAKPRNAFF 834
>gi|259480979|tpe|CBF74098.1| TPA: component of the holoenzyme form of RNA polymerase
transcription factor (Eurofung) [Aspergillus nidulans
FGSC A4]
Length = 818
Score = 566 bits (1459), Expect = e-159, Method: Compositional matrix adjust.
Identities = 276/489 (56%), Positives = 368/489 (75%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 303 LEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 362
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 363 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 422
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 423 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPAIMFRKVTSAIATQSKLGLTATL 482
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 483 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 541
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL +YA+KL+K IYG T E
Sbjct: 542 AALLYTMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALEKYALKLKKAYIYGGTPQNE 600
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 601 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 660
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 661 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 713
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR------RIAGSMSAMSG 473
+Y E+ LL +V+ + + +E + +D ++ + ++AR R A ++S ++G
Sbjct: 714 AYATPAERRELLQEVMLQNESSADVENVTDDLFSERSSGNRARAKPGVKRSAATLSGLAG 773
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 774 GEDMAYIEY 782
>gi|336469324|gb|EGO57486.1| DNA repair helicase RAD25 [Neurospora tetrasperma FGSC 2508]
gi|350291041|gb|EGZ72255.1| DNA repair helicase RAD25 [Neurospora tetrasperma FGSC 2509]
Length = 864
Score = 566 bits (1459), Expect = e-158, Method: Compositional matrix adjust.
Identities = 278/496 (56%), Positives = 364/496 (73%), Gaps = 27/496 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N DL ++L+P+ Q RPYQE+SLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 341 ILEEYDFRNDSNNADLEIDLRPNTQIRPYQEQSLSKMFGNGRAKSGIIVLPCGAGKTLVG 400
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D I FT++SK +F GN G++VTT
Sbjct: 401 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDIAVFTAESKNKFSGNTGIIVTT 460
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +++REWGL+L+DEVHVVPA +FR+VIS KSH KLGLTAT
Sbjct: 461 YSMVTNNRERSHDSKKMMDFLKSREWGLMLLDEVHVVPADVFRRVISSIKSHSKLGLTAT 520
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ EYL+ NS+
Sbjct: 521 LLREDDKISHLNFLIGPKLYEANWMELSEKGHIAKVQCAEVWCPMPTEFYDEYLRA-NSR 579
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL K IYG T
Sbjct: 580 MKRTLYAMNPRKFQACQYLINYHE-ARGDKIIVFSDELYSLKQYALKLNKVFIYGGTGQA 638
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 639 ERMQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 698
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L ++ D
Sbjct: 699 RR-------NDVGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIENTPD 751
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI---------------ALHKARRIA 465
L++ E+ LL + L D+ G E D + DD+ RR+A
Sbjct: 752 LAFATAQERRELLQRTLV--DNEKGAED-DVETDDLFGKVGRGRGGGGAKGRAAAVRRMA 808
Query: 466 GSMSAMSGAQGMVYME 481
G++ +SG Q M Y+E
Sbjct: 809 GTLGELSGGQDMAYIE 824
>gi|238503147|ref|XP_002382807.1| TFIIH complex helicase Ssl2, putative [Aspergillus flavus NRRL3357]
gi|220691617|gb|EED47965.1| TFIIH complex helicase Ssl2, putative [Aspergillus flavus NRRL3357]
gi|391870679|gb|EIT79856.1| RNA polymerase II transcription initiation [Aspergillus oryzae
3.042]
Length = 824
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/488 (56%), Positives = 361/488 (73%), Gaps = 16/488 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 308 LEEYDFRNDEINPTLDIDLKPQARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 367
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 368 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 427
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 428 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATL 487
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 488 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 546
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 547 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 605
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 606 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 665
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 666 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 718
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED-------ADDIALHKARRIAGSMSAMSGA 474
+Y E+ LL +V+ + + +E + +D +R A ++S ++G
Sbjct: 719 AYATPSERRELLQEVMLQNETSADVEAVTDDLFSERSGGPRAKKGAVKRSAATLSGLAGG 778
Query: 475 QGMVYMEY 482
+ M Y+EY
Sbjct: 779 EDMAYIEY 786
>gi|425772494|gb|EKV10895.1| hypothetical protein PDIG_53830 [Penicillium digitatum PHI26]
gi|425774926|gb|EKV13217.1| hypothetical protein PDIP_49050 [Penicillium digitatum Pd1]
Length = 822
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/489 (57%), Positives = 363/489 (74%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDF+ D VNP+L+M+LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 307 LEEYDFQGDTVNPNLDMDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 366
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AA IKK + L T+++SV QW +F W+TI I FTSD KE+F+ + G++V+TY
Sbjct: 367 TAAATIKKGTIVLCTSSMSVVQWRNEFLRWTTIDPGDIAIFTSDHKEKFKRSTGIIVSTY 426
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWG++++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 427 SMVSQTRARSYDAQKMMDWLQSREWGMMILDEVHVVPASMFRKVTSAIAAQSKLGLTATL 486
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L G IA VQCAEVWCPMT EF+SEYL +E+S+K
Sbjct: 487 LREDDKIKDLNFLIGPKLYEANWMELAAQGHIAKVQCAEVWCPMTTEFYSEYL-RESSRK 545
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ LY+MNP KF+AC+FLI FHE +RGDKIIVF+DN++AL YA+KL K IYG T E
Sbjct: 546 QALLYIMNPRKFQACQFLIDFHE-KRGDKIIVFSDNVYALERYALKLNKAYIYGGTPQNE 604
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 605 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 664
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM YS KRQ FLIDQGY+FKVIT L D+ L
Sbjct: 665 R-------NDEGFNAFFYSLVSKDTNEMVYSAKRQAFLIDQGYAFKVITHLQGIDNYEGL 717
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK--------ARRIAGSMSAMSG 473
SY E+ LL +V+ + + +EQ+++D + K A+R A ++S ++G
Sbjct: 718 SYATPAERRELLQEVMLQNESSADVEQVNDDLFSMRSGKRVTTKKGGAKRSAATLSGLAG 777
Query: 474 AQGMVYMEY 482
M Y+EY
Sbjct: 778 GDDMAYIEY 786
>gi|169776451|ref|XP_001822692.1| DNA repair helicase ercc3 [Aspergillus oryzae RIB40]
gi|83771427|dbj|BAE61559.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 824
Score = 566 bits (1458), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/488 (56%), Positives = 361/488 (73%), Gaps = 16/488 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 308 LEEYDFRNDEINPTLDIDLKPQARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 367
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 368 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 427
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 428 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATL 487
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 488 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 546
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 547 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 605
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 606 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 665
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 666 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 718
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED-------ADDIALHKARRIAGSMSAMSGA 474
+Y E+ LL +V+ + + +E + +D +R A ++S ++G
Sbjct: 719 AYATPSERRELLQEVMLQNETSADVEAVTDDLFSERSGGPRAKKGAVKRSAATLSGLAGG 778
Query: 475 QGMVYMEY 482
+ M Y+EY
Sbjct: 779 EDMAYIEY 786
>gi|67902428|ref|XP_681470.1| hypothetical protein AN8201.2 [Aspergillus nidulans FGSC A4]
gi|40739655|gb|EAA58845.1| hypothetical protein AN8201.2 [Aspergillus nidulans FGSC A4]
Length = 833
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/489 (56%), Positives = 368/489 (75%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 318 LEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 377
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 378 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 437
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 438 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPAIMFRKVTSAIATQSKLGLTATL 497
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 498 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 556
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL +YA+KL+K IYG T E
Sbjct: 557 AALLYTMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALEKYALKLKKAYIYGGTPQNE 615
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 616 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 675
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 676 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 728
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR------RIAGSMSAMSG 473
+Y E+ LL +V+ + + +E + +D ++ + ++AR R A ++S ++G
Sbjct: 729 AYATPAERRELLQEVMLQNESSADVENVTDDLFSERSSGNRARAKPGVKRSAATLSGLAG 788
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 789 GEDMAYIEY 797
>gi|255955729|ref|XP_002568617.1| Pc21g16090 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590328|emb|CAP96506.1| Pc21g16090 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 822
Score = 565 bits (1457), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/489 (57%), Positives = 363/489 (74%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDF+ D VNP+L+M+LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 307 LEEYDFQGDTVNPNLDMDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 366
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AA IKK + L T+++SV QW +F W+TI I FTSD KE+F+ + G++V+TY
Sbjct: 367 TAAATIKKGTIVLCTSSMSVVQWRNEFLRWTTIDPGDIAIFTSDHKEKFKRSTGIIVSTY 426
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWG++++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 427 SMVSQTRARSYDAQKMMDWLQSREWGMMILDEVHVVPASMFRKVTSAIAAQSKLGLTATL 486
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L G IA VQCAEVWCPMT EF+SEYL +E+S+K
Sbjct: 487 LREDDKIKDLNFLIGPKLYEANWMELAAQGHIAKVQCAEVWCPMTTEFYSEYL-RESSRK 545
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ LY+MNP KF+AC+FLI FHE +RGDKIIVF+DN++AL YA+KL K IYG T E
Sbjct: 546 QALLYIMNPRKFQACQFLIDFHE-KRGDKIIVFSDNVYALERYALKLNKAYIYGGTPQNE 604
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 605 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 664
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM YS KRQ FLIDQGY+FKVIT L D+ L
Sbjct: 665 R-------NDEGFNAFFYSLVSKDTNEMVYSAKRQAFLIDQGYAFKVITHLQGIDNYEGL 717
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED------ADDIALHKA--RRIAGSMSAMSG 473
SY E+ LL +V+ + + +EQ+++D + KA +R A ++S ++G
Sbjct: 718 SYATPAERRELLQEVMLQNESSADVEQVNDDLFSMRSGKRVTAKKAGPKRSAATLSGLAG 777
Query: 474 AQGMVYMEY 482
M Y+EY
Sbjct: 778 GDDMAYIEY 786
>gi|390346293|ref|XP_794167.3| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like, partial [Strongylocentrotus purpuratus]
Length = 757
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 262/412 (63%), Positives = 333/412 (80%), Gaps = 9/412 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPDL+++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 304 LLAEYDFRNDTRNPDLSIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 363
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A+C ++K C+ L T+ V+V+QW QF++WST+ D ICRFTSD+K++ G + ++T
Sbjct: 364 VTASCTVRKRCMVLCTSGVAVEQWRSQFRMWSTVDDSMICRFTSDAKDKPMG-CSICIST 422
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA KRS E++++++ ++++EWGL+++DEVH +PA FR+V++ ++HCKLGLTAT
Sbjct: 423 YSMVAHSTKRSWEADQVMQWLQSQEWGLMILDEVHTIPAKQFRRVLTQVQAHCKLGLTAT 482
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L GFIA VQCAEVWCPM EFF EYL ++
Sbjct: 483 LVREDDKIADLNFLIGPKLYEANWMELQNKGFIARVQCAEVWCPMAPEFFREYLAI-RTR 541
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
++ LYVMNPNKFRAC+FL+RFHE QR DK+IVF+DN+FAL YA+ + +P IYG TS
Sbjct: 542 RRLLLYVMNPNKFRACQFLVRFHE-QRNDKVIVFSDNVFALKHYAIAMGRPYIYGPTSQG 600
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + ++TIF+SKVGDNS D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 601 ERMQILQNFQHNPAVSTIFISKVGDNSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 660
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
EEYNAFFY+LVS DTQEMFYS KRQ+FL++QGYSFK IT L
Sbjct: 661 ------KGSIAEEYNAFFYTLVSQDTQEMFYSLKRQRFLVNQGYSFKTITKL 706
>gi|226287233|gb|EEH42746.1| DNA repair helicase RAD25 [Paracoccidioides brasiliensis Pb18]
Length = 833
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/492 (56%), Positives = 368/492 (74%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 314 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 373
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+F+ + G++V+TY
Sbjct: 374 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFKRSTGIIVSTY 433
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWGL+L+DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 434 SMVSQTRARSHDAQKMMDWLQSREWGLMLLDEVHVVPASMFRKVTSAIATQAKLGLTATL 493
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 494 LREDDKIKDLNFLIGPKLYEANWMELSEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 552
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 553 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 611
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 612 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 671
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 672 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 724
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED---------ADDIALHKA--RRIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D A++KA +R A ++S
Sbjct: 725 AYATPGERRELLQEVMLQNETSAVVEEVVDDLFSGRSGGPKSRAAMNKAAVKRSAATLSG 784
Query: 471 MSGAQGMVYMEY 482
++G + M Y+E+
Sbjct: 785 LAGGEDMAYVEH 796
>gi|46125805|ref|XP_387456.1| hypothetical protein FG07280.1 [Gibberella zeae PH-1]
Length = 872
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/512 (56%), Positives = 369/512 (72%), Gaps = 28/512 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D N +L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 316 VLEEYDFRRDEANANLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 375
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 376 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTGSTGIIVT 435
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY MV RS ++EK+++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 436 TYAMVTQSRARSYDAEKMMKFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 495
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ +YLK S
Sbjct: 496 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDQYLKAP-S 554
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL+K IYG T
Sbjct: 555 RKKGLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLQKAFIYGGTGQ 613
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 614 AERLQVLENFQHNPNVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 673
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 674 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 726
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK----------ARRIAGSM 468
L++ + E+ LL KVL V E ++E D +D H+ ARR AG++
Sbjct: 727 GLAFADVSERRELLQKVL------VENESMEEDDPNDDMFHQGTMGRRKKKGARRTAGTL 780
Query: 469 SAMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
+SG Q M Y+E K+ KA S FF
Sbjct: 781 GELSGGQDMAYIEQNKKMSAKRK-KADSNAFF 811
>gi|225683607|gb|EEH21891.1| TFIIH basal transcription factor complex helicase XPB subunit
[Paracoccidioides brasiliensis Pb03]
Length = 787
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/492 (56%), Positives = 368/492 (74%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 268 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 327
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+F+ + G++V+TY
Sbjct: 328 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFKRSTGIIVSTY 387
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWGL+L+DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 388 SMVSQTRARSHDAQKMMDWLQSREWGLMLLDEVHVVPASMFRKVTSAIATQAKLGLTATL 447
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 448 LREDDKIKDLNFLIGPKLYEANWMELSEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 506
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 507 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 565
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 566 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 625
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 626 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 678
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED---------ADDIALHKA--RRIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D A++KA +R A ++S
Sbjct: 679 AYATPGERRELLQEVMLQNETSAVVEEVVDDLFSGRSGGPKSRAAMNKAAVKRSAATLSG 738
Query: 471 MSGAQGMVYMEY 482
++G + M Y+E+
Sbjct: 739 LAGGEDMAYVEH 750
>gi|440638918|gb|ELR08837.1| DNA excision repair protein ERCC-3 [Geomyces destructans 20631-21]
Length = 869
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 279/492 (56%), Positives = 363/492 (73%), Gaps = 20/492 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND N +L ++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 353 ILEEYDFRNDQANANLEIDLKPSAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 412
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+K + L T+++SV QW +F WS I + I FTSD KE+F N G++V+T
Sbjct: 413 ITAACTIRKGVIILCTSSMSVVQWRQEFLKWSNINPNDIAIFTSDHKEKFTRNTGIIVST 472
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS ++ K++E ++NREWGL+++DEVHVVPA++FRKV S K+H KLGLTAT
Sbjct: 473 YSMVTQTRQRSYDAGKMMEFLQNREWGLMILDEVHVVPANIFRKVTSSIKTHSKLGLTAT 532
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEYL +E +
Sbjct: 533 LLREDDKINDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYL-RETHR 591
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA KL + IYG T
Sbjct: 592 KRGLLYIMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVYALKMYAEKLGRAYIYGETPQA 650
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 651 ERMRILDNFQHNENINTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 710
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L ++
Sbjct: 711 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITHLQGIENLPG 763
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI---------ALHK--ARRIAGSMS 469
L++ E+ LL V+ + A E++ +D + A K RR AG+++
Sbjct: 764 LAFSTPAERRELLQNVMIQNEGAFDSEKIADDLFSVSGAGGNRNAAFRKKGVRRTAGTLA 823
Query: 470 AMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 824 ELSGGQDMAYIE 835
>gi|302916051|ref|XP_003051836.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732775|gb|EEU46123.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 802
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/513 (55%), Positives = 367/513 (71%), Gaps = 28/513 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D VN +L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 291 VLEEYDFRRDEVNANLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 351 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTGSTGIIVT 410
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY MV RS ++EK++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 411 TYAMVTQSRARSYDAEKMMRFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 470
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ +YLK S
Sbjct: 471 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDQYLKAP-S 529
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL+K IYG T
Sbjct: 530 RKKGLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLQKAFIYGGTGQ 588
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 589 AERLQVLENFQHNPNVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 648
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 649 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 701
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK-----------ARRIAGS 467
L++ + E+ LL KVL V E ++E D +D H+ ARR AG+
Sbjct: 702 GLAFADVSERRELLQKVL------VENESMEEDDPNDDLFHQGTMGRKKKKKGARRTAGT 755
Query: 468 MSAMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
+ +SG Q M Y+E + K S FF
Sbjct: 756 LGELSGGQDMAYIEQNKKMQTLKRNKKDSNAFF 788
>gi|70985010|ref|XP_748011.1| TFIIH complex helicase Ssl2 [Aspergillus fumigatus Af293]
gi|66845639|gb|EAL85973.1| TFIIH complex helicase Ssl2, putative [Aspergillus fumigatus Af293]
gi|159126065|gb|EDP51181.1| TFIIH complex helicase Ssl2, putative [Aspergillus fumigatus A1163]
Length = 830
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/489 (56%), Positives = 363/489 (74%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 314 LEEYDFRNDEINPTLDIDLKPNARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 373
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KERFR + G++V+TY
Sbjct: 374 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAIFTSDNKERFRRSTGIIVSTY 433
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 434 SMVSQTRARSHDAQKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATL 493
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 494 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 552
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 553 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 611
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 612 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 671
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 672 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 724
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--------ADDIALHKARRIAGSMSAMSG 473
+Y E+ LL +V+ + + +E + +D A +R A ++S ++G
Sbjct: 725 AYATPAERRELLQEVMLQNETSAEVENVTDDLFSERSGGPKGRAKGGVKRSAATLSGLAG 784
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 785 GEDMAYIEY 793
>gi|408399632|gb|EKJ78730.1| hypothetical protein FPSE_01098 [Fusarium pseudograminearum CS3096]
Length = 825
Score = 565 bits (1455), Expect = e-158, Method: Compositional matrix adjust.
Identities = 287/512 (56%), Positives = 369/512 (72%), Gaps = 28/512 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D N +L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 316 VLEEYDFRRDEANANLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 375
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 376 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTGSTGIIVT 435
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY MV RS ++EK+++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 436 TYAMVTQSRARSYDAEKMMKFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 495
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ +YLK S
Sbjct: 496 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDQYLKAP-S 554
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL+K IYG T
Sbjct: 555 RKKGLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLQKAFIYGGTGQ 613
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 614 AERLQVLENFQHNPNVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 673
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 674 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 726
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK----------ARRIAGSM 468
L++ + E+ LL KVL V E ++E D +D H+ ARR AG++
Sbjct: 727 GLAFADVSERRELLQKVL------VENESMEEDDPNDDMFHQGTMGRRKKKGARRTAGTL 780
Query: 469 SAMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
+SG Q M Y+E K+ KA S FF
Sbjct: 781 GELSGGQDMAYIEQNKKMSAKRK-KADSNAFF 811
>gi|389638922|ref|XP_003717094.1| DNA repair helicase RAD25 [Magnaporthe oryzae 70-15]
gi|351642913|gb|EHA50775.1| DNA repair helicase RAD25 [Magnaporthe oryzae 70-15]
gi|440473086|gb|ELQ41908.1| DNA repair helicase RAD25 [Magnaporthe oryzae Y34]
gi|440478289|gb|ELQ59131.1| DNA repair helicase RAD25 [Magnaporthe oryzae P131]
Length = 835
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 288/514 (56%), Positives = 363/514 (70%), Gaps = 27/514 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NP L+++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 321 ILEEYDFRNDTFNPVLDIDLRPNTQVRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 380
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IK+ + L T+ +SV QW +F WS I I FTSD K++F G+VV T
Sbjct: 381 ITAACTIKRGVIVLCTSTMSVVQWRDEFLKWSNIAPADIVAFTSDDKQKFNSETGIVVAT 440
Query: 121 YNMVAFG-GKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
YNM+ KRS E+ KI+E +++REWGL+++DEVHV PA MFR+V S KSH KLGLTA
Sbjct: 441 YNMITHDKKKRSHETLKILEWLQSREWGLMILDEVHVAPAKMFRRVTSALKSHSKLGLTA 500
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKLYEANW++L GG IA VQCAEVWCPM EF+ EYL + S
Sbjct: 501 TLLREDDKISDLNFLIGPKLYEANWMELSLGGHIARVQCAEVWCPMPTEFYREYL-RSTS 559
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
K LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL +YA L K MIYG TS+
Sbjct: 560 HHKALLYIMNPMKFQACQYLINYHE-ARGDKIIVFSDNVYALKKYASVLSKCMIYGGTSN 618
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER IL+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 619 SERQLILKNFQHNPEINTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 678
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DT EM+YS KRQ FL+DQGY+FKVIT L ++
Sbjct: 679 KRR-------NDEGFNAFFYSLVSKDTTEMYYSAKRQAFLVDQGYAFKVITQLANMENIP 731
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA-----------RRIAGSM 468
DL Y+ + +L LL ++ + + DE+ DD+ H RR+AG M
Sbjct: 732 DLKYNTAESRLELLREIQIENEKQT---EGDEEIDDL-FHSGKIAGKGRKSNVRRMAGRM 787
Query: 469 SAMSGAQGMVYMEY--RYDPWQKQLFKASSQIFF 500
SG QGM ME + K+ KA S FF
Sbjct: 788 DEYSGGQGMTMMERGPTRNTQLKKTKKAESSSFF 821
>gi|400602650|gb|EJP70252.1| DNA repair helicase rad25 [Beauveria bassiana ARSEF 2860]
Length = 816
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/512 (55%), Positives = 366/512 (71%), Gaps = 26/512 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D NP+L+++L+P Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 305 VLEEYDFRHDEANPNLDIDLRPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 364
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ GV+VT
Sbjct: 365 ITAACTIKKGIIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSVFTGSTGVIVT 424
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV RS ++EK+++ + REWGL+L+DEVHVVPA++FR+V S K+H KLGLTA
Sbjct: 425 TYSMVTQSRARSYDAEKMMKFLTGREWGLMLLDEVHVVPANIFRRVTSSIKTHSKLGLTA 484
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWC M EF+ EYL+ S
Sbjct: 485 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCAMPTEFYDEYLRAP-S 543
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 544 RKKNLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQ 602
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER K+L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 603 AERLKVLENFQHNPLVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 662
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEMF+S+KRQ FL+DQGY+FKVIT L +
Sbjct: 663 KRR-------NDEGFNAFFYSLVSKDTQEMFFSSKRQAFLVDQGYAFKVITQLANIEQTP 715
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH---------KARRIAGSMSA 470
L++ E+ LL KVL + A DED D H + RR AG++
Sbjct: 716 GLAFATAAERRELLQKVLVENEGAE-----DEDITDDLFHSGTMGRAQKRVRRTAGTLGE 770
Query: 471 MSGAQGMVYMEY--RYDPWQKQLFKASSQIFF 500
+SG Q M Y+E + + K+ K S FF
Sbjct: 771 LSGGQNMAYIEQNKKVNQGLKKKGKKESNAFF 802
>gi|169616097|ref|XP_001801464.1| hypothetical protein SNOG_11221 [Phaeosphaeria nodorum SN15]
gi|111060600|gb|EAT81720.1| hypothetical protein SNOG_11221 [Phaeosphaeria nodorum SN15]
Length = 804
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 280/490 (57%), Positives = 359/490 (73%), Gaps = 16/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDF NDN N +L ++LKPHAQ R YQEK+LSKMF N RARSGIIVLPCGAGK+LVG
Sbjct: 292 LTEEYDFNNDNKNANLEIDLKPHAQIRYYQEKALSKMFSNSRARSGIIVLPCGAGKTLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+SV QW +F WS I + + FT+D+K F NAG++++T
Sbjct: 352 ITAACGVKKSVIVLCTSAMSVVQWRAEFIKWSNINPEDVAVFTADNKNSFPRNAGIIIST 411
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++ KRS ++EK++E IR+REWGLL+ DEVHVVPA++F+KV SH KLGLTAT
Sbjct: 412 YSMISNARKRSYDAEKVMEFIRSREWGLLIADEVHVVPANIFKKVTYEIASHAKLGLTAT 471
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW +L + G IA VQCAEVWC MT EF++E+LK ++
Sbjct: 472 LLREDDKIDDLNFLIGPKLYEANWQELSEQGHIARVQCAEVWCQMTPEFYTEWLKPSTTQ 531
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +MNP KF+AC+FLI +HE RGDKIIVF+DN++AL +YA KL K IYGAT
Sbjct: 532 KRALLSIMNPRKFQACQFLINYHE-SRGDKIIVFSDNVYALEKYAKKLNKVFIYGATPQA 590
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL+ F+ + ++NTIFLSK+GD S+D+PEA +IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 591 ERLTILENFQHNPNVNTIFLSKIGDTSLDLPEATCLIQVSSHYGSRRQEAQRLGRILRAK 650
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L + D
Sbjct: 651 RR-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITRLEGMEQSTD 703
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA--DDIALHKA------RRIAGSMSAMS 472
L++ E+ LL VL A D+ E+++ DA + A K RR AG++S S
Sbjct: 704 LAFATPSERRELLMDVLLARDEDGKEERIEGDAFGTNFASGKGKNKKGVRRAAGTLSEFS 763
Query: 473 GAQGMVYMEY 482
G Q M Y EY
Sbjct: 764 GGQTMAYAEY 773
>gi|119498889|ref|XP_001266202.1| TFIIH complex helicase Ssl2, putative [Neosartorya fischeri NRRL
181]
gi|119414366|gb|EAW24305.1| TFIIH complex helicase Ssl2, putative [Neosartorya fischeri NRRL
181]
Length = 829
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/489 (56%), Positives = 363/489 (74%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 313 LEEYDFRNDEINPTLDIDLKPNARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 372
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 373 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAIFTSDNKEKFRRSTGIIVSTY 432
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 433 SMVSQTRARSHDAQKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQSKLGLTATL 492
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 493 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 551
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 552 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 610
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 611 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 670
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 671 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 723
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--------ADDIALHKARRIAGSMSAMSG 473
+Y E+ LL +V+ + + +E + +D A +R A ++S ++G
Sbjct: 724 AYATPAERRELLQEVMLQNETSAEVENVTDDLFSERSGGPKGRAKGGVKRSAATLSGLAG 783
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 784 GEDMAYIEY 792
>gi|121718807|ref|XP_001276200.1| TFIIH complex helicase Ssl2, putative [Aspergillus clavatus NRRL 1]
gi|119404398|gb|EAW14774.1| TFIIH complex helicase Ssl2, putative [Aspergillus clavatus NRRL 1]
Length = 823
Score = 564 bits (1453), Expect = e-158, Method: Compositional matrix adjust.
Identities = 275/489 (56%), Positives = 362/489 (74%), Gaps = 17/489 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 307 LEEYDFRNDEINPTLDIDLKPNARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 366
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I + FTSD+KE+FR + G++V+TY
Sbjct: 367 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDVAVFTSDNKEKFRRSTGIIVSTY 426
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 427 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIATQAKLGLTATL 486
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 487 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 545
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA KL K IYG T E
Sbjct: 546 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYARKLNKAYIYGGTPQNE 604
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 605 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 664
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 665 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 717
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--------ADDIALHKARRIAGSMSAMSG 473
++ E+ LL +V+ + + +E + +D A RR A ++S ++G
Sbjct: 718 AFATPAERRELLQEVMLQNETSAEVENVMDDLFSERSGGFKGKAKGGVRRSAATLSGLAG 777
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 778 GEDMAYIEY 786
>gi|342885823|gb|EGU85775.1| hypothetical protein FOXB_03623 [Fusarium oxysporum Fo5176]
Length = 825
Score = 563 bits (1452), Expect = e-158, Method: Compositional matrix adjust.
Identities = 281/493 (56%), Positives = 362/493 (73%), Gaps = 27/493 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D N +L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 316 VLEEYDFRRDEANANLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 375
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 376 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNNVFTGSTGIIVT 435
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY MV RS ++EK+++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 436 TYAMVTQSRARSYDAEKMMKFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 495
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ +YLK S
Sbjct: 496 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDQYLKAP-S 554
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL+K IYG T
Sbjct: 555 RKKGLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLQKAFIYGGTGQ 613
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 614 AERLQVLENFQHNPNVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 673
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 674 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 726
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDE-DADDIALHK----------ARRIAGSM 468
L++ + E+ LL KVL V E ++E D +D H+ ARR AG++
Sbjct: 727 GLAFADVSERRELLQKVL------VENESMEEDDPNDDMFHQGTMGRKKKKGARRTAGTL 780
Query: 469 SAMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 781 GELSGGQDMAYIE 793
>gi|406861685|gb|EKD14738.1| DNA repair helicase rad25 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 839
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 276/491 (56%), Positives = 366/491 (74%), Gaps = 19/491 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+ N +L+++L+P AQ R YQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 322 VLEEYDFRNDDANANLDIDLRPIAQIRHYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 381
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F W I + I FTSD+K+RF GN G++VTT
Sbjct: 382 ITAACTIKKGVIILCTSSMSVVQWRQEFLKWCNINPNDIAVFTSDNKDRFTGNTGIIVTT 441
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNMVA GKRS +S+K+++ + +REWGL+++DEVHV PAHMFR+V S+ K+H KLGLTAT
Sbjct: 442 YNMVAQQGKRSYDSQKMMDFLTSREWGLMILDEVHVAPAHMFRRVTSIIKTHSKLGLTAT 501
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EYL ++S+
Sbjct: 502 LLREDDKISDLNFLIGPKLYEANWMELAEQGHIARVQCAEVWCPMTTEFYTEYL-NQSSR 560
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K +++MNP KF+AC++LI +HE +RGDKIIVF+DN++AL YA KL K IYG T +
Sbjct: 561 NKSLIWIMNPRKFQACQYLINYHE-KRGDKIIVFSDNVYALKMYAQKLNKVFIYGETGNT 619
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 620 ERLRILENFQHNSNINTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 679
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM YS+KRQ FL+DQGY+FKVIT L ++ D
Sbjct: 680 RR-------NDEGFNAFFYSLVSKDTLEMVYSSKRQAFLVDQGYAFKVITHLQGIENLPD 732
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVG--------LEQLDEDADDIALHK--ARRIAGSMSA 470
L++ E+ LL V+ + ++D + K ARR AG++S
Sbjct: 733 LAFTTPAERRELLQNVMIHNEAGGDDYEDGDDLFHRVDGEMGRKKKKKKGARRTAGNLSE 792
Query: 471 MSGAQGMVYME 481
++G M Y+E
Sbjct: 793 LAGGSDMAYVE 803
>gi|145242602|ref|XP_001393874.1| DNA repair helicase ercc3 [Aspergillus niger CBS 513.88]
gi|134078426|emb|CAL00841.1| unnamed protein product [Aspergillus niger]
Length = 818
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/486 (56%), Positives = 360/486 (74%), Gaps = 14/486 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 305 LEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 364
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+A C IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 365 TAGCTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 424
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S KLGLTATL
Sbjct: 425 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIACQSKLGLTATL 484
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 485 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 543
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 544 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALQRYALKLNKAYIYGGTPQNE 602
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 603 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 662
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 663 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 715
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED-----ADDIALHKARRIAGSMSAMSGAQG 476
+Y E+ LL +V+ + + +E + +D + +R A ++S ++G +
Sbjct: 716 AYATPSERRELLQEVMLQNETSAEVEHVTDDLFSGRSGGQRKGAVKRSAATLSGLAGGED 775
Query: 477 MVYMEY 482
M Y+EY
Sbjct: 776 MAYIEY 781
>gi|350640166|gb|EHA28519.1| TFIIH basal transcription factor complex, subunit SSL2/RAD25
[Aspergillus niger ATCC 1015]
Length = 825
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/486 (56%), Positives = 360/486 (74%), Gaps = 14/486 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 312 LEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 371
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+A C IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 372 TAGCTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 431
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S KLGLTATL
Sbjct: 432 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIACQSKLGLTATL 491
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 492 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 550
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 551 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALQRYALKLNKAYIYGGTPQNE 609
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 610 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 669
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 670 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 722
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED-----ADDIALHKARRIAGSMSAMSGAQG 476
+Y E+ LL +V+ + + +E + +D + +R A ++S ++G +
Sbjct: 723 AYATPSERRELLQEVMLQNETSAEVEHVTDDLFSGRSGGQRKGAVKRSAATLSGLAGGED 782
Query: 477 MVYMEY 482
M Y+EY
Sbjct: 783 MAYIEY 788
>gi|358371648|dbj|GAA88255.1| TFIIH complex helicase Ssl2 [Aspergillus kawachii IFO 4308]
Length = 814
Score = 563 bits (1450), Expect = e-158, Method: Compositional matrix adjust.
Identities = 274/486 (56%), Positives = 360/486 (74%), Gaps = 14/486 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP A+ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 301 LEEYDFRNDEINPTLDIDLKPAARIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 360
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+A C IKK + L T+++SV QW +F WS I I FTSD+KE+FR + G++V+TY
Sbjct: 361 TAGCTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPGDIAVFTSDNKEKFRRSTGIIVSTY 420
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ I++REWGL+++DEVHVVPA MFRKV S KLGLTATL
Sbjct: 421 SMVSQTRARSHDAQKMMDWIQSREWGLMILDEVHVVPASMFRKVTSAIACQSKLGLTATL 480
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E S+K
Sbjct: 481 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-REKSRK 539
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 540 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALQRYALKLNKAYIYGGTPQNE 598
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 599 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 658
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 659 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 711
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED-----ADDIALHKARRIAGSMSAMSGAQG 476
+Y E+ LL +V+ + + +E + +D + +R A ++S ++G +
Sbjct: 712 AYATPSERRELLQEVMLQNETSAEVEHVTDDLFSGRSGGQRKGAVKRSAATLSGLAGGED 771
Query: 477 MVYMEY 482
M Y+EY
Sbjct: 772 MAYIEY 777
>gi|340520673|gb|EGR50909.1| Rad3 protein [Trichoderma reesei QM6a]
Length = 829
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 281/493 (56%), Positives = 356/493 (72%), Gaps = 26/493 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D VN L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 319 VLEEYDFRRDEVNATLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 378
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 379 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNSVFTGSTGIIVT 438
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV RS ++EK+++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 439 TYSMVTQSRARSYDAEKMMKFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 498
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ EYL+ S
Sbjct: 499 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDEYLRAP-S 557
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 558 RKKNLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQ 616
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 617 AERLQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 676
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 677 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 729
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-----------ARRIAGSM 468
L++ E+ LL KVL + DED D H ARR AG++
Sbjct: 730 GLAFATAAERRELLQKVLVENETMD-----DEDITDDLFHSGTMGRKKKKGAARRTAGTL 784
Query: 469 SAMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 785 GELSGGQDMAYIE 797
>gi|303319627|ref|XP_003069813.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109499|gb|EER27668.1| DNA repair helicase, putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 832
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/491 (56%), Positives = 365/491 (74%), Gaps = 19/491 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 315 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 374
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I + I FTSD+KERFR + G++V+TY
Sbjct: 375 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRSTGIIVSTY 434
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 435 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 494
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 495 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 553
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 554 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 612
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 613 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 672
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 673 R-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 725
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED----------ADDIALHKARRIAGSMSAM 471
+Y E+ LL +V+ + + +E++ +D A +R A ++S +
Sbjct: 726 AYATAAERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPRAKAARKAAVKRSAATLSGL 785
Query: 472 SGAQGMVYMEY 482
+G + M Y+E+
Sbjct: 786 AGGEDMAYIEH 796
>gi|119183122|ref|XP_001242631.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|392865533|gb|EJB10993.1| DNA repair helicase rad25 [Coccidioides immitis RS]
Length = 832
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/491 (56%), Positives = 365/491 (74%), Gaps = 19/491 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 315 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 374
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I + I FTSD+KERFR + G++V+TY
Sbjct: 375 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRSTGIIVSTY 434
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 435 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 494
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 495 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 553
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 554 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 612
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 613 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 672
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 673 R-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 725
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED----------ADDIALHKARRIAGSMSAM 471
+Y E+ LL +V+ + + +E++ +D A +R A ++S +
Sbjct: 726 AYATAAERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPRAKAARKAAVKRSAATLSGL 785
Query: 472 SGAQGMVYMEY 482
+G + M Y+E+
Sbjct: 786 AGGEDMAYIEH 796
>gi|358391751|gb|EHK41155.1| hypothetical protein TRIATDRAFT_249572 [Trichoderma atroviride IMI
206040]
Length = 801
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 281/492 (57%), Positives = 355/492 (72%), Gaps = 25/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D VN L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 288 VLEEYDFRRDEVNATLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 347
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 348 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNSVFTGSTGIIVT 407
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV RS ++EK++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 408 TYSMVTQSRARSYDAEKMMRFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 467
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ EYL+ S
Sbjct: 468 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDEYLRAP-S 526
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 527 RKKNLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQ 585
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 586 AERLQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 645
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 646 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 698
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK----------ARRIAGSMS 469
L++ E+ LL KVL + DED D H ARR AG++
Sbjct: 699 GLAFATATERRELLQKVLVENETMD-----DEDITDDLFHSGTMGRKKKGAARRTAGTLG 753
Query: 470 AMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 754 ELSGGQDMAYIE 765
>gi|358379026|gb|EHK16707.1| hypothetical protein TRIVIDRAFT_41182 [Trichoderma virens Gv29-8]
Length = 834
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 281/493 (56%), Positives = 355/493 (72%), Gaps = 26/493 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D VN L+++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 320 VLEEYDFRRDEVNATLDIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 379
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 380 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKNSVFTGSTGIIVT 439
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV RS ++EK++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 440 TYSMVTQSRARSYDAEKMMRFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 499
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ EYL+ S
Sbjct: 500 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDEYLRAP-S 558
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 559 RKKNLLYIMNPRKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQ 617
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 618 AERLQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 677
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 678 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 730
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-----------ARRIAGSM 468
L++ E+ LL KVL + DED D H ARR AG++
Sbjct: 731 GLAFATATERRELLQKVLVENETMD-----DEDITDDLFHSGTMGRKKKKGAARRTAGTL 785
Query: 469 SAMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 786 GELSGGQDMAYIE 798
>gi|429854912|gb|ELA29893.1| DNA repair helicase rad25 [Colletotrichum gloeosporioides Nara gc5]
Length = 826
Score = 562 bits (1448), Expect = e-157, Method: Compositional matrix adjust.
Identities = 290/516 (56%), Positives = 369/516 (71%), Gaps = 31/516 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D NP+L ++L+P RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 316 VLEEYDFRRDEANPNLEIDLRPGTLIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 375
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC +KK + L T+++SV QW +F WS I+ + I FTSD+K F GN G++VT
Sbjct: 376 ITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIQAFTSDNKGAIFPGNTGIIVT 435
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV +RS E++K+++ ++ REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 436 TYSMVTQTRERSHEAKKMMDFLQTREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 495
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+ EYLK ++
Sbjct: 496 TLLREDDKISDLNFLIGPKLYEANWMELSEQGHIAKVQCAEVWCPMTAEFYDEYLKA-SA 554
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+ LY+MNP KF+A ++LI +HE RGDKIIVF+DN++AL YA KL+K IYG T
Sbjct: 555 RKRALLYIMNPRKFQAAQYLINYHE-SRGDKIIVFSDNVYALKMYAEKLQKVYIYGGTGQ 613
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ILQ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 614 AERMNILQNFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 673
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L +
Sbjct: 674 KKRNE-------EGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEKTP 726
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK---------------ARRI 464
L+Y E+ LL KVL ++ G E DE DD+ H ARR
Sbjct: 727 GLAYAAASERRELLQKVLI--ENEAGGE--DEVIDDL-FHSGNMGRAPARGKKKAAARRT 781
Query: 465 AGSMSAMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
AG + +SG Q M YME K+ KA S FF
Sbjct: 782 AGLLGDLSGGQDMAYMEQNKRVKLKKA-KAESSTFF 816
>gi|345481459|ref|XP_001601816.2| PREDICTED: DNA excision repair protein haywire-like isoform 1
[Nasonia vitripennis]
Length = 809
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/486 (57%), Positives = 354/486 (72%), Gaps = 19/486 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VN D+N++LKP RPYQEKSL KMFGNGRA GAGKSLVG
Sbjct: 321 LLAEYDFRNDTVNEDINIDLKPSTVLRPYQEKSLRKMFGNGRAXXXXXXXXIGAGKSLVG 380
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G +++TT
Sbjct: 381 VTACSTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CKILITT 439
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ ++ ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 440 YSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 499
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G IA VQCAEVWCPMT EF+ EYL + +
Sbjct: 500 LLREDDKIADLNFLIGPKLYEANWLELQKNGHIAKVQCAEVWCPMTPEFYREYLSCKMT- 558
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K LYVMNPNKFRAC+FLIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 559 RKLLLYVMNPNKFRACQFLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQG 617
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 618 ERIQILQNFKYNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 677
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS +RQ+FL++QGY++KVIT L D D
Sbjct: 678 K------GAIAEEYNAFFYTLVSQDTMEMNYSRRRQRFLVNQGYAYKVITKLAGMDDEPD 731
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
+ Y +EQ LL +VLSA D +D D + I R R AG+M+++SGA
Sbjct: 732 MMYKTREEQGQLLQQVLSASD-------VDADEERIPGEGPRPMVRKAGNMASLSGADDA 784
Query: 478 VYMEYR 483
VY EY+
Sbjct: 785 VYYEYK 790
>gi|345481457|ref|XP_003424374.1| PREDICTED: DNA excision repair protein haywire-like isoform 2
[Nasonia vitripennis]
Length = 802
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/486 (57%), Positives = 354/486 (72%), Gaps = 19/486 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VN D+N++LKP RPYQEKSL KMFGNGRA GAGKSLVG
Sbjct: 314 LLAEYDFRNDTVNEDINIDLKPSTVLRPYQEKSLRKMFGNGRAXXXXXXXXIGAGKSLVG 373
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G +++TT
Sbjct: 374 VTACSTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CKILITT 432
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ ++ ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 433 YSMITHTQKRSWEAEQTMKWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 492
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G IA VQCAEVWCPMT EF+ EYL + +
Sbjct: 493 LLREDDKIADLNFLIGPKLYEANWLELQKNGHIAKVQCAEVWCPMTPEFYREYLSCKMT- 551
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K LYVMNPNKFRAC+FLIR+HE +RGDK IVF+DN+FAL YA+K+ KP IYG TS
Sbjct: 552 RKLLLYVMNPNKFRACQFLIRYHE-RRGDKTIVFSDNVFALKHYAIKMNKPYIYGPTSQG 610
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 611 ERIQILQNFKYNTKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 670
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
EEYNAFFY+LVS DT EM YS +RQ+FL++QGY++KVIT L D D
Sbjct: 671 K------GAIAEEYNAFFYTLVSQDTMEMNYSRRRQRFLVNQGYAYKVITKLAGMDDEPD 724
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR---RIAGSMSAMSGAQGM 477
+ Y +EQ LL +VLSA D +D D + I R R AG+M+++SGA
Sbjct: 725 MMYKTREEQGQLLQQVLSASD-------VDADEERIPGEGPRPMVRKAGNMASLSGADDA 777
Query: 478 VYMEYR 483
VY EY+
Sbjct: 778 VYYEYK 783
>gi|261202560|ref|XP_002628494.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis SLH14081]
gi|239590591|gb|EEQ73172.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis SLH14081]
gi|239612316|gb|EEQ89303.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis ER-3]
gi|327358169|gb|EGE87026.1| DNA repair helicase RAD25 [Ajellomyces dermatitidis ATCC 18188]
Length = 833
Score = 561 bits (1447), Expect = e-157, Method: Compositional matrix adjust.
Identities = 275/492 (55%), Positives = 363/492 (73%), Gaps = 20/492 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 314 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 373
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR N G++V+TY
Sbjct: 374 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRNTGIIVSTY 433
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 434 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 493
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 494 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 552
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 553 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 611
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 612 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 671
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 672 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 724
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED-----------ADDIALHKARRIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D +R A ++S
Sbjct: 725 AYATPAERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPKARGAAKKAAVKRSAATLSG 784
Query: 471 MSGAQGMVYMEY 482
++G + M Y+E+
Sbjct: 785 LAGGEDMAYIEH 796
>gi|258571163|ref|XP_002544385.1| DNA repair helicase RAD25 [Uncinocarpus reesii 1704]
gi|237904655|gb|EEP79056.1| DNA repair helicase RAD25 [Uncinocarpus reesii 1704]
Length = 791
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/490 (56%), Positives = 362/490 (73%), Gaps = 19/490 (3%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 274 LEEYDFRNDEINPTLDIDLKPSAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 333
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I + I FTSD+KERFR + G++V+TY
Sbjct: 334 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRSTGIIVSTY 393
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 394 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 453
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 454 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 512
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC++LI+FHE RGDKIIVF+DN++AL YA+KL K IYG T E
Sbjct: 513 AALLYIMNPRKFQACQYLIKFHE-DRGDKIIVFSDNVYALERYALKLNKAYIYGGTPQNE 571
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 572 RLRILENFQHNDQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 631
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L + L
Sbjct: 632 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLQDIEKMDGL 684
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED----------ADDIALHKARRIAGSMSAM 471
+Y E+ LL +V+ + + +E++ +D A +R A ++S +
Sbjct: 685 AYSTAAERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPRAKAAKKAAVKRSAATLSGL 744
Query: 472 SGAQGMVYME 481
+G + M Y+E
Sbjct: 745 AGGEDMAYIE 754
>gi|212535202|ref|XP_002147757.1| TFIIH complex helicase Ssl2, putative [Talaromyces marneffei ATCC
18224]
gi|210070156|gb|EEA24246.1| TFIIH complex helicase Ssl2, putative [Talaromyces marneffei ATCC
18224]
Length = 832
Score = 561 bits (1446), Expect = e-157, Method: Compositional matrix adjust.
Identities = 276/496 (55%), Positives = 362/496 (72%), Gaps = 27/496 (5%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 309 LEEYDFRNDRDNPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 368
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+F+ + G++V+TY
Sbjct: 369 TAACTIKKGVIVLCTSSMSVVQWRNEFIRWSNIDPGDIAIFTSDNKEKFKRSTGIIVSTY 428
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ + REWGL+++DEVHVVPA MFRKV S KLGLTATL
Sbjct: 429 SMVSQTRARSHDAQKMMDWLTQREWGLMILDEVHVVPASMFRKVTSSIACQAKLGLTATL 488
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E+S+K
Sbjct: 489 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-RESSRK 547
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T E
Sbjct: 548 AALLYIMNPRKFQACQFLINYHE-KRGDKIIVFSDNVYALQRYALKLGKAYIYGGTPQNE 606
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 607 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 666
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 667 R-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 719
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK---------------ARRIAG 466
+Y E+ LL +V+ + + +E + DD+ + A+R A
Sbjct: 720 AYATPSERRELLQEVMLQNETSAEVENV---VDDLFAERSGGQRGGRAGAKKAIAKRSAA 776
Query: 467 SMSAMSGAQGMVYMEY 482
++S ++G + M Y+EY
Sbjct: 777 TLSGLAGGEDMAYVEY 792
>gi|189210050|ref|XP_001941357.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187977450|gb|EDU44076.1| TFIIH basal transcription factor complex helicase XPB subunit
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 803
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 278/490 (56%), Positives = 358/490 (73%), Gaps = 17/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDF ND+ NP+L ++LKPHAQ R YQEK+L KMF N RARSGIIVLPCGAGK+LVG
Sbjct: 292 LTEEYDFNNDDTNPNLEIDLKPHAQIRYYQEKALGKMFSNSRARSGIIVLPCGAGKTLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+SV QW +F WS I + I FT+D+K RF AG++++T
Sbjct: 352 ITAACGVKKSVMVLCTSAMSVVQWRAEFIKWSNINPEDIAVFTADNKTRFPRQAGIIIST 411
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++ KRS ++EK+++ IR REWGLL+ DEVHVVPA++F+KV SH KLGLTAT
Sbjct: 412 YSMISNARKRSHDAEKVMQFIREREWGLLIADEVHVVPANIFKKVTYEIASHAKLGLTAT 471
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW +L + G IA VQCAEVWC MT EF++E+LK + +
Sbjct: 472 LLREDDKIDDLNFLIGPKLYEANWQELSEQGHIAKVQCAEVWCQMTPEFYTEWLKPSSLQ 531
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +MNP KF+AC+FLI +HE RGDKIIVF+DN++AL +Y+ KL K IYGAT
Sbjct: 532 KRALLSIMNPKKFQACQFLINYHE-SRGDKIIVFSDNVYALEKYSRKLGKAYIYGATPQQ 590
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 591 ERLRILENFQHNDQINTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 650
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L DS
Sbjct: 651 RR-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITRLEGLDSFPQ 703
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA--DDIALHKA-------RRIAGSMSAM 471
L++ E+ LL V+ A ++ E++++DA A K RR AG++S
Sbjct: 704 LAFATPQERRELLTDVVLAKEEDAKAERIEDDAFGTKYASQKGNRKKNGVRRAAGTLSEF 763
Query: 472 SGAQGMVYME 481
SG Q M YME
Sbjct: 764 SGGQTMAYME 773
>gi|330948023|ref|XP_003307038.1| hypothetical protein PTT_20359 [Pyrenophora teres f. teres 0-1]
gi|311315156|gb|EFQ84865.1| hypothetical protein PTT_20359 [Pyrenophora teres f. teres 0-1]
Length = 803
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 277/490 (56%), Positives = 360/490 (73%), Gaps = 17/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDF ND NP+L+++L+PHAQ R YQEK+L KMF N RARSGIIVLPCGAGK+LVG
Sbjct: 292 LTEEYDFNNDETNPNLDIDLRPHAQIRYYQEKALGKMFSNSRARSGIIVLPCGAGKTLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+SV QW +F WS I + I FT+D+K RF +AG++++T
Sbjct: 352 ITAACGVKKSVMVLCTSAMSVVQWRAEFIKWSNINPEDIAVFTADNKTRFPRSAGIIIST 411
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++ KRS ++EK+++ IR REWGLL+ DEVHVVPA++F+KV SH KLGLTAT
Sbjct: 412 YSMISNARKRSHDAEKVMQFIREREWGLLIADEVHVVPANIFKKVTYEIASHAKLGLTAT 471
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW +L + G IA VQCAEVWC MT EF++E+LK + +
Sbjct: 472 LLREDDKIDDLNFLIGPKLYEANWQELSEQGHIAKVQCAEVWCQMTPEFYTEWLKPSSLQ 531
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +MNP KF+AC+FLI +HE RGDKIIVF+DN++AL +Y+ KL K IYGAT
Sbjct: 532 KRALLSIMNPKKFQACQFLINYHE-SRGDKIIVFSDNVYALEKYSRKLGKAYIYGATPQQ 590
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + ++NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 591 ERLRILENFQHNDEINTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 650
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L DS
Sbjct: 651 RR-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITRLEGLDSFPQ 703
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA--DDIALHKA-------RRIAGSMSAM 471
L++ E+ LL V+ A ++ E++++DA A K RR AG++S
Sbjct: 704 LAFATPQERRELLTDVVLAKEEDGKTERIEDDAFGTKYASQKGNRKKNGVRRAAGTLSEF 763
Query: 472 SGAQGMVYME 481
SG Q M YME
Sbjct: 764 SGGQTMAYME 773
>gi|310791605|gb|EFQ27132.1| DNA repair helicase rad25 [Glomerella graminicola M1.001]
Length = 821
Score = 560 bits (1443), Expect = e-157, Method: Compositional matrix adjust.
Identities = 283/497 (56%), Positives = 361/497 (72%), Gaps = 30/497 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D NP+L ++L+P RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 311 VLEEYDFRRDEANPNLEIDLRPGTLIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 370
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-FRGNAGVVVT 119
++AAC +KK + L T+++SV QW +F WS I+ + I FTSD+K R F GN G++VT
Sbjct: 371 ITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIEAFTSDNKGRVFPGNTGIIVT 430
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV +RS E++K+++ ++ REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 431 TYSMVTQTRERSHEAKKMMDFLQTREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 490
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+ EYLK ++
Sbjct: 491 TLLREDDKISDLNFLIGPKLYEANWMELSEQGHIAKVQCAEVWCPMTTEFYDEYLKA-SA 549
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+ LY+MNP KF+A ++LI +HE RGDKIIVF+DN++AL YA KL K I+G T
Sbjct: 550 RKRALLYIMNPRKFQAAQYLINYHE-SRGDKIIVFSDNVYALKTYAEKLEKAYIFGGTGQ 608
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ILQ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 609 AERMNILQNFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 668
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L +
Sbjct: 669 KRR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEKTP 721
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK---------------ARRI 464
L+Y E+ LL KVL ++ G E DE DD+ H ARR
Sbjct: 722 GLAYAAASERRELLQKVLI--ENEAGGE--DEVIDDL-FHSGTMGRAPPRGKKKAAARRT 776
Query: 465 AGSMSAMSGAQGMVYME 481
AG + +SG Q M YME
Sbjct: 777 AGLLGDLSGGQDMAYME 793
>gi|322707230|gb|EFY98809.1| DNA repair helicase RAD25 [Metarhizium anisopliae ARSEF 23]
Length = 827
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 280/492 (56%), Positives = 355/492 (72%), Gaps = 25/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D VN +L ++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 314 VLEEYDFRRDEVNSNLEIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 373
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 374 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSVFTGSTGIIVT 433
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV RS +++K+++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 434 TYSMVTQSRARSYDADKMMKFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 493
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ EYL+ S
Sbjct: 494 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDEYLRAP-S 552
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 553 RKKNLLYIMNPRKFQACQYLINYHE-ARGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQ 611
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER K+L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 612 PERLKVLENFQHNPLVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 671
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 672 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 724
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA----------RRIAGSMS 469
L++ E+ LL KVL + DED D H RR AG++
Sbjct: 725 GLAFATAGERRELLQKVLVENESME-----DEDITDDLFHSGSMGRKKKKGPRRTAGTLG 779
Query: 470 AMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 780 ELSGGQDMAYIE 791
>gi|396492464|ref|XP_003843805.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Leptosphaeria maculans JN3]
gi|312220385|emb|CBY00326.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Leptosphaeria maculans JN3]
Length = 806
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 279/490 (56%), Positives = 355/490 (72%), Gaps = 16/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDF ND N L+++LKPHAQ R YQEK+LSKMF N RARSGIIVLPCGAGK+LVG
Sbjct: 297 LTEEYDFNNDFNNATLDIDLKPHAQIRYYQEKALSKMFSNSRARSGIIVLPCGAGKTLVG 356
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+SV QW +F WS I I FT++SK RF NAG++V+T
Sbjct: 357 ITAACGVKKSVIVLCTSAMSVVQWRAEFIKWSNINPADIAVFTAESKTRFPNNAGIIVST 416
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++ KRS ++EK++E IR+REWGLL+ DEVHVVPA++F+KV SH KLGLTAT
Sbjct: 417 YSMISNARKRSHDAEKVMEFIRSREWGLLIADEVHVVPANIFKKVTYEIASHAKLGLTAT 476
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW +L + G IA VQCAEVWC MT EF++E+LK + +
Sbjct: 477 LLREDDKIDDLNFLIGPKLYEANWQELSEQGHIARVQCAEVWCQMTPEFYTEWLKPSSLQ 536
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +MNP KF+ACE+LI +HE RGDKIIVF+DN++AL YA+KL K I+G T
Sbjct: 537 KRALLSIMNPKKFQACEYLINYHE-SRGDKIIVFSDNVYALQAYAVKLNKAYIFGGTPQA 595
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 596 ERIQILENFQHNNIINTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 655
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L +
Sbjct: 656 RR-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITRLEGLEKYEK 708
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA--------RRIAGSMSAMS 472
L + E+ LL ++L A DDA E + DA + RR AG++S +S
Sbjct: 709 LHFSTPQERRELLLEILIARDDAGNTETIAGDAFGTQYAASRGKKNTGVRRAAGTLSELS 768
Query: 473 GAQGMVYMEY 482
G Q M Y+EY
Sbjct: 769 GGQTMAYIEY 778
>gi|322701630|gb|EFY93379.1| DNA repair helicase RAD25 [Metarhizium acridum CQMa 102]
Length = 827
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 280/492 (56%), Positives = 355/492 (72%), Gaps = 25/492 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D VN +L ++LKP Q RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 314 VLEEYDFRRDEVNSNLEIDLKPGTQIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 373
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGNAGVVVT 119
++AAC IKK + L T+++SV QW +F WS I D I FTSDSK F G+ G++VT
Sbjct: 374 ITAACTIKKGVIVLCTSSMSVVQWRNEFLKWSNINPDDIVAFTSDSKGSVFTGSTGIIVT 433
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV RS +++K+++ + REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 434 TYSMVTQSRARSYDADKMMKFLTGREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 493
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKL+EANW++L K G IA VQCAEVWCPM EF+ EYL+ S
Sbjct: 494 TLLREDDKISDLNFLIGPKLFEANWMELSKQGHIARVQCAEVWCPMPTEFYDEYLRAP-S 552
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+KK LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YA+KL K IYG T
Sbjct: 553 RKKNLLYIMNPRKFQACQYLINYHE-ARGDKIIVFSDNVYALKAYALKLGKAFIYGGTGQ 611
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER K+L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 612 PERLKVLENFQHNPLVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 671
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DTQEM++S+KRQ FL+DQGY+FKVIT L +
Sbjct: 672 KRR-------NDEGFNAFFYSLVSKDTQEMYFSSKRQAFLVDQGYAFKVITQLANIEKTP 724
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA----------RRIAGSMS 469
L++ E+ LL KVL + DED D H RR AG++
Sbjct: 725 GLAFATAGERRELLQKVLVENESME-----DEDITDDLFHSGSMGRKKKNGPRRTAGTLG 779
Query: 470 AMSGAQGMVYME 481
+SG Q M Y+E
Sbjct: 780 ELSGGQDMAYIE 791
>gi|452981911|gb|EME81670.1| hypothetical protein MYCFIDRAFT_154357 [Pseudocercospora fijiensis
CIRAD86]
Length = 807
Score = 559 bits (1440), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/508 (54%), Positives = 361/508 (71%), Gaps = 16/508 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDFR D++N +L+++LKP+ Q R YQE +LSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 289 LTEEYDFRADDINANLDIDLKPNVQIRYYQEHALSKMFGNGRARSGIIVLPCGAGKTLVG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+S QW +FK WS I D I FTS K++ R AGV++ T
Sbjct: 349 ITAACTVKKSAIVLCTSAMSAVQWKDEFKKWSNINPDDIVIFTSGEKQKLRDKAGVIICT 408
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +R+ +S+ +++ I +REWGL+++DEVHVVPA MFR+V K+H KLGLTAT
Sbjct: 409 YSMVTQNTRRAHDSKVVMDFIMSREWGLMVLDEVHVVPAEMFRRVTERIKTHSKLGLTAT 468
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL L + G IA VQCAEVWCPMT EF+SEYL + +
Sbjct: 469 LLREDDKIKDLNFLIGPKLYEANWLQLSEEGHIARVQCAEVWCPMTTEFYSEYLSAQTTN 528
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L MNP KF+AC+FLI FHE RGDKIIVF+DN++AL +YA L+KP I+G TS
Sbjct: 529 KRGLLSTMNPRKFQACQFLINFHE-SRGDKIIVFSDNVYALRKYAEALQKPFIFGDTSQK 587
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +L F+ + ++TIFLSK+GD S+D+PEA +IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 588 EREMVLANFQMNDAVSTIFLSKIGDTSLDLPEATCLIQVSSHYGSRRQEAQRLGRILRAK 647
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L + +
Sbjct: 648 RR-------NDEGFNAFFYSLVSKDTNEMFYSSKRQAFLVDQGYAFKVITHLNGIEKMPN 700
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHKA-----RRIAGSMSAMS 472
L + E++ L VL + A +E + +D +++ KA RR AG++S+++
Sbjct: 701 LKFTTQQERMTALQDVLLQSETAGDVEDIKDDLFSDRNVSRGKAKGKGVRRQAGTLSSLA 760
Query: 473 GAQGMVYMEYRYDPWQKQLFKASSQIFF 500
G + M Y EY + K L FF
Sbjct: 761 GGENMAYYEYSKNNPNKALAAKPRNQFF 788
>gi|320040710|gb|EFW22643.1| TFIIH complex helicase Ssl2 [Coccidioides posadasii str. Silveira]
Length = 485
Score = 558 bits (1438), Expect = e-156, Method: Compositional matrix adjust.
Identities = 267/451 (59%), Positives = 349/451 (77%), Gaps = 9/451 (1%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 6 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 65
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I + I FTSD+KERFR + G++V+TY
Sbjct: 66 TAACTIKKGTIVLCTSSMSVVQWRNEFLRWSNIDPNDIAIFTSDNKERFRRSTGIIVSTY 125
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 126 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 185
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 186 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 244
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDK+IVF+DN++AL YA+KL K IYG T E
Sbjct: 245 AALLYIMNPRKFQACQFLIDYHE-KRGDKVIVFSDNVYALERYALKLNKAYIYGGTPQNE 303
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 304 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 363
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 364 R-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 416
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED 452
+Y E+ LL +V+ + + +E++ +D
Sbjct: 417 AYATAAERRELLQEVMLQNETSAAVEEVVDD 447
>gi|392576784|gb|EIW69914.1| hypothetical protein TREMEDRAFT_68365 [Tremella mesenterica DSM
1558]
Length = 867
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 274/442 (61%), Positives = 338/442 (76%), Gaps = 9/442 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +N +L+++LKP R YQE SL+KMFGNGRARSGIIVLPCGAGK+LVG+
Sbjct: 329 LEEYDFRNDTINANLDIQLKPMTVIRSYQETSLAKMFGNGRARSGIIVLPCGAGKTLVGI 388
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKKS L L T+AVSV QW QF +S I + QI FT KE F G AG+V++TY
Sbjct: 389 TAACTIKKSTLVLCTSAVSVAQWKQQFIHFSNISERQISTFTQGEKEMFAGPAGIVISTY 448
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+A GKR+ ++EK+++ +R+REWG LL+DEVHVVPA MFRK ++ K H KLGLTATL
Sbjct: 449 SMIAKTGKRAHDAEKMMQFLRSREWGFLLLDEVHVVPAEMFRKCLNNFKVHAKLGLTATL 508
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED+++ DL +L+GPKLYEANW+DL K G IA VQCAEVWCPMT EF+ EYL+ S+K
Sbjct: 509 VREDDKVKDLGYLVGPKLYEANWMDLAKNGHIATVQCAEVWCPMTPEFYREYLRNP-SRK 567
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L+ MNPNK +AC+FLI +HE RGDK IVF+DN++AL YA KL K I+G T E
Sbjct: 568 RILLHAMNPNKIQACQFLINYHE-SRGDKNIVFSDNVYALEAYAKKLGKSFIHGGTPEGE 626
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL F+ +LNTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 627 RLRILARFQHDPNLNTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKR 686
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVSTDTQEM+YS+KRQ FLIDQGY+FKVIT L D +L
Sbjct: 687 R-------NDEGFNAFFYSLVSTDTQEMYYSSKRQGFLIDQGYAFKVITELHGLDQLPNL 739
Query: 422 SYHRLDEQLALLGKVLSAGDDA 443
+ +Q++LL +VL+ GD+A
Sbjct: 740 VFPTKQQQISLLEEVLNTGDNA 761
>gi|451853872|gb|EMD67165.1| hypothetical protein COCSADRAFT_285430 [Cochliobolus sativus
ND90Pr]
gi|451999787|gb|EMD92249.1| hypothetical protein COCHEDRAFT_1224108 [Cochliobolus
heterostrophus C5]
Length = 804
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 276/490 (56%), Positives = 361/490 (73%), Gaps = 17/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDF ND+ NP+L ++LKPHAQ R YQEK+LSKMF N RARSGIIVLPCGAGK+LVG
Sbjct: 293 LTEEYDFNNDDTNPNLEIDLKPHAQIRYYQEKALSKMFSNSRARSGIIVLPCGAGKTLVG 352
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC +KKS + L T+A+SV QW +F WS I + + FT+D+K RF AG++++T
Sbjct: 353 ITAACGVKKSVIVLCTSAMSVVQWRAEFIKWSNINPEDVAVFTADNKTRFPRQAGIIIST 412
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++ KRS ++EK+++ IR +EWGLL+ DEVHVVPA++F+KV SH KLGLTAT
Sbjct: 413 YSMISNARKRSHDAEKVMQFIRGQEWGLLIADEVHVVPANIFKKVTYEIASHAKLGLTAT 472
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW +L + G IA VQCAEVWC MT EF++E+LK + +
Sbjct: 473 LLREDDKIDDLNFLIGPKLYEANWQELSEQGHIAKVQCAEVWCQMTPEFYTEWLKPSSLQ 532
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +MNP KF+AC+FLI +HE RGDKIIVF+DN++AL +Y+ KL K IYGAT
Sbjct: 533 KRALLSIMNPKKFQACQFLINYHE-SRGDKIIVFSDNVYALEKYSRKLGKAYIYGATPQQ 591
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 592 ERLRILENFQHNELVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 651
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++ +
Sbjct: 652 RR-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITRLEGLENFSQ 704
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA--DDIALHKA-------RRIAGSMSAM 471
L++ E+ LL VL A ++ E+++ DA A +K RR AG++S +
Sbjct: 705 LAFATPQERRELLMDVLLAREEDAKEERIEGDAFGTKYASNKGNKKKFGVRRAAGTLSEL 764
Query: 472 SGAQGMVYME 481
SG Q M YME
Sbjct: 765 SGGQTMAYME 774
>gi|17556358|ref|NP_499487.1| Protein Y66D12A.15 [Caenorhabditis elegans]
gi|15795210|emb|CAC70144.1| Protein Y66D12A.15 [Caenorhabditis elegans]
Length = 789
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 278/487 (57%), Positives = 361/487 (74%), Gaps = 22/487 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NP+L ++LKP RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 298 LLAEYDFRNDTLNPNLGIDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 357
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+A + K CL LA + VSV+QW QFKLWSTIQD Q+ RFT ++K+ A
Sbjct: 358 VTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSGADATKPV 417
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ G+R+ ++E+ ++ I +EWGLLL+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 418 VCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMFRRVLTIVQAHCKL 477
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPMT F+S YL+
Sbjct: 478 GLTATLVREDDKITDLNFLIGPKIYEANWMELQKAGHIAKVQCAEVWCPMTSAFYSYYLR 537
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ + +K L VMNPNKFR C+FLI+FHE +R DKIIVF+DN+FAL YA++++KP +YG
Sbjct: 538 SQIA-RKLLLAVMNPNKFRICQFLIKFHE-RRNDKIIVFSDNVFALKRYAIEMQKPFLYG 595
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
TS ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+H GSRRQEAQRLGR
Sbjct: 596 ETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGR 655
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
ILRAK D ++NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ +LP
Sbjct: 656 ILRAKKHSTD-------QFNAFFYSLVSQDTVEMGYSRKRQRFLVNQGYAYKVVNNLP-- 706
Query: 416 DSGADLSYHRL--DEQLALLGKVLSAGDDAVGLEQ-LDEDADDIALHKARRIAGSMSAMS 472
G +L +L E L + + A DA E+ + E+ D + +RR A +M++MS
Sbjct: 707 --GMELEDLKLASKESQLQLLQQVLATSDADAEEEDVKEELADGTIRISRREA-TMASMS 763
Query: 473 GAQGMVY 479
G QG Y
Sbjct: 764 GGQGAQY 770
>gi|324505126|gb|ADY42208.1| TFIIH basal transcription factor complex helicase XPB subunit
[Ascaris suum]
Length = 798
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 271/460 (58%), Positives = 348/460 (75%), Gaps = 15/460 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NP+L ++LKP RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 301 LLAEYDFRNDTFNPNLGIDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 360
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF----RGNAGV 116
V+AA + K CL LAT+ VSV+QW QFKLWSTI+DDQ+ RFT ++++ N V
Sbjct: 361 VTAATTVNKRCLVLATSNVSVEQWRAQFKLWSTIRDDQLTRFTREARDPVPSGPNANKPV 420
Query: 117 V-VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ GKR+ +E+ ++ I + EWGLLL+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 421 VCISTYSMVAYTGKRTYAAEEAMKYIESLEWGLLLLDEVHTIPAKMFRRVLTIVRAHCKL 480
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPM+ EF+S YL+
Sbjct: 481 GLTATLVREDDKITDLNFLIGPKIYEANWMELQKAGHIAKVQCAEVWCPMSAEFYSYYLR 540
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ + ++ L VMNPNKFR C+FLI+FHE +R DKIIVF+DN+FAL +YA+++ KP +YG
Sbjct: 541 AQIA-RRLLLAVMNPNKFRICQFLIKFHE-RRNDKIIVFSDNVFALKKYAIEMNKPFLYG 598
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
T ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+H GSRRQEAQRLGR
Sbjct: 599 ETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGR 658
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
ILRAK D +NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ LP
Sbjct: 659 ILRAKKNSTD-------AFNAFFYSLVSQDTVEMSYSRKRQRFLVNQGYAYKVVNRLPGM 711
Query: 416 DSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADD 455
+ DL + QL LL +VL+A D E + E++ D
Sbjct: 712 EK-EDLKLGTKEAQLNLLHQVLAASDADAEEEDIKEESFD 750
>gi|440907187|gb|ELR57360.1| TFIIH basal transcription factor complex helicase XPB subunit [Bos
grunniens mutus]
Length = 778
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/482 (57%), Positives = 358/482 (74%), Gaps = 16/482 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 292 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 351
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 352 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 410
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 411 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 470
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 471 LVREDDKIVDLNFLIGPKLYEANWMELQNSGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 529
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 530 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 588
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV + + ++I+Q+ + + ++L
Sbjct: 589 ERMQILQNFKHNPKINTIFISKVKEVKFSLFACDMILQVENPKNFTK-------KLLDIF 641
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
K RM EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 642 SKF--RMVA--EEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 696
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
L++ +EQ LL KVL+A D E + + + +RR G+MS+MSGA VYM
Sbjct: 697 LAFSTKEEQQQLLQKVLAATDLDAEEEVVAGEFGSKSSQVSRRF-GTMSSMSGADDTVYM 755
Query: 481 EY 482
EY
Sbjct: 756 EY 757
>gi|156050235|ref|XP_001591079.1| hypothetical protein SS1G_07704 [Sclerotinia sclerotiorum 1980]
gi|154692105|gb|EDN91843.1| hypothetical protein SS1G_07704 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 847
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/493 (56%), Positives = 355/493 (72%), Gaps = 24/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND NP+L ++L+P AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 333 VLEEYDFRNDEANPNLEIDLRPSAQIRHYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 392
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I I FTSD KE+F + G++VTT
Sbjct: 393 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPADIAVFTSDHKEKFTRSTGIIVTT 452
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV R+ +++K+++ + +REWGL+L+DEVHVVPA +FRKV S K+H KLGLTAT
Sbjct: 453 YSMVTQTRARAFDAQKMMDFLTSREWGLMLLDEVHVVPAAIFRKVTSSIKTHSKLGLTAT 512
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW++L G IA VQCAEVWCPMT EF SEYLK S+
Sbjct: 513 LLREDDKIEDLNFLIGPKLYEANWMELAAQGHIARVQCAEVWCPMTTEFHSEYLKAP-SR 571
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ + MNP KF+AC+FLI +HE +RGDKIIVF+DN+FAL YA KL K IYG T+
Sbjct: 572 KQGLISTMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVFALHVYASKLNKVFIYGGTAQA 630
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + D+NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 631 ERIRILENFQHNPDINTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 690
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT+EM+YS+KRQ FL+DQGY+FK IT L +
Sbjct: 691 RR-------NDEGFNAFFYSLVSKDTKEMYYSSKRQAFLVDQGYAFKAITHLQGIEDLPG 743
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK------------ARRIAGSM 468
L+++ ++ LL V+ D E+ ED D H+ RR AG +
Sbjct: 744 LAFNTPQDRRELLQNVMLHNMDE---ERFQEDLRDDLFHRNDGKPRPKKKSNVRRTAGKL 800
Query: 469 SAMSGAQGMVYME 481
+ ++G Q M Y+E
Sbjct: 801 ADLAGGQDMAYIE 813
>gi|242792361|ref|XP_002481937.1| TFIIH complex helicase Ssl2, putative [Talaromyces stipitatus ATCC
10500]
gi|218718525|gb|EED17945.1| TFIIH complex helicase Ssl2, putative [Talaromyces stipitatus ATCC
10500]
Length = 831
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 274/493 (55%), Positives = 361/493 (73%), Gaps = 21/493 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 308 LEEYDFRNDRDNPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 367
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+F+ + G++V+TY
Sbjct: 368 TAACTIKKGVIVLCTSSMSVVQWRNEFIRWSNIDPSDIAIFTSDNKEKFKRSTGIIVSTY 427
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS +++K+++ + REWGL+++DEVHVVPA MFRKV S KLGLTATL
Sbjct: 428 SMVSQTRARSHDAQKMMDWLTQREWGLMILDEVHVVPASMFRKVTSSIACQAKLGLTATL 487
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF+SEY+ +E+S+K
Sbjct: 488 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYSEYM-RESSRK 546
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA+KL K IYG T E
Sbjct: 547 AALLYIMNPRKFQACQFLIDYHE-RRGDKIIVFSDNVYALQRYALKLGKAYIYGGTPQNE 605
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 606 RMRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 665
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 666 R-------NDEGFNAFFYSLVSKDTDEMYYSSKRQAFLVDQGYAFKVITHLQGIENLEGL 718
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKARR----------IAGSMS 469
+Y E+ LL +V+ + + +E + +D ++ + R A ++S
Sbjct: 719 AYATPSERRELLQEVMLQNETSAEVENVVDDLFSERSGAQRGGRAAAKKAVAKRSAATLS 778
Query: 470 AMSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 779 GLAGGEDMAYVEY 791
>gi|453083736|gb|EMF11781.1| TFIIH basal transcription factor complex helicase XPB subunit
[Mycosphaerella populorum SO2202]
Length = 847
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/510 (54%), Positives = 364/510 (71%), Gaps = 19/510 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDFR D++N L+++L+P+ Q R YQE +LSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 324 LTEEYDFRADDINATLDIDLRPNVQIRYYQEHALSKMFGNGRARSGIIVLPCGAGKTLVG 383
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE--RFRGNAGVVV 118
++AAC +KKS + L T+A+S QW +FK WS I D I FTS K+ AGV++
Sbjct: 384 ITAACTVKKSAIVLCTSAMSAVQWKEEFKKWSNINPDDIAIFTSGEKDILNLSKKAGVII 443
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TY+MV +R+ +S+K+++ I +REWGL+++DEVHVVPA MFR+V K+H KLGLT
Sbjct: 444 CTYSMVTQNTRRAHDSKKVMDFITSREWGLMVLDEVHVVPAEMFRRVTERIKTHSKLGLT 503
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATL+RED++I DLNFLIGPKLYEANWL L + G IA VQCAEVWCPMT EF+ EYL +
Sbjct: 504 ATLLREDDKIKDLNFLIGPKLYEANWLQLSEEGHIARVQCAEVWCPMTTEFYKEYLDAKT 563
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+ K+ L MNP K++AC+FLI FHE +RGDK+IVF+DN++AL +YA L KP IYG TS
Sbjct: 564 TNKRSLLSTMNPRKYQACQFLIDFHE-KRGDKVIVFSDNVYALQKYATGLTKPYIYGDTS 622
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER +LQ F+ + +++IFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILR
Sbjct: 623 QREREIVLQNFQQNDAVSSIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILR 682
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
AK + E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L +
Sbjct: 683 AKRR-------NDEGFNAFFYSLVSKDTNEMYYSSKRQAFLVDQGYAFKVITHLNGIEKM 735
Query: 419 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDA---DDIALHK-----ARRIAGSMSA 470
+L+++ E++ LL VL + A +E + +D +++ K RR AG++S+
Sbjct: 736 PNLAFNTQQERMTLLTDVLLQSETAGDVEDIQDDLFSDRNVSRSKKKGSGVRRQAGTLSS 795
Query: 471 MSGAQGMVYMEY-RYDPWQKQLFKASSQIF 499
++GA M YME+ R K L K +Q F
Sbjct: 796 LAGADNMAYMEHERGKNPNKALAKPRNQFF 825
>gi|339233162|ref|XP_003381698.1| DNA excision repair protein haywire [Trichinella spiralis]
gi|316979455|gb|EFV62248.1| DNA excision repair protein haywire [Trichinella spiralis]
Length = 837
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 280/489 (57%), Positives = 355/489 (72%), Gaps = 27/489 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NP+L ++LKP A RPYQEKSL KMFGN RARSG+IVLPCGAGKSLVG
Sbjct: 302 LLAEYDFRNDTSNPNLCIDLKPSAVLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKSLVG 361
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF----RGNAGV 116
V+A C + K CLCL + VSV QW QFK+WST D +I RFT +S + R NA V
Sbjct: 362 VTACCTVNKRCLCLCNSNVSVQQWRNQFKMWSTADDSKIVRFTRESGDHVPSGNRANAPV 421
Query: 117 V-VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
+ ++TY+M+A+ G+RS E+E++++ IR +EWGL+L+DEVH +PA MFR+V+++ SHCKL
Sbjct: 422 ICISTYSMIAYQGRRSFEAEQMMQYIRQQEWGLILLDEVHTIPAKMFRRVLTIVHSHCKL 481
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPKLYEANW++L K G+IA+VQCAEVWCP+T EF+ YL
Sbjct: 482 GLTATLVREDDKITDLNFLIGPKLYEANWMELQKQGYIAHVQCAEVWCPVTAEFYDYYLT 541
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ S K L VMNPNKFR C+FL+++HE +R DKIIVF+DN+FAL +YA+ + +P +YG
Sbjct: 542 SKIS-VKLLLAVMNPNKFRICQFLVKYHE-RRNDKIIVFSDNVFALKKYAIAMERPFLYG 599
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
TS ER +ILQ F+ + +NTIF+SK ANV+IQIS+H GSRRQEAQRLGR
Sbjct: 600 DTSQNERMQILQNFQFNPRVNTIFVSK----------ANVLIQISAHGGSRRQEAQRLGR 649
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
ILRAK R +++NAFFYSLVS DT EM Y +RQ+FLI+QGYS+KVIT+L
Sbjct: 650 ILRAK-----RGGSCSDQFNAFFYSLVSQDTLEMSYGRRRQRFLINQGYSYKVITNLVGM 704
Query: 416 DSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKAR----RIAGSMSAM 471
+ L Y +EQL LL +VLSA D E + ED D A R GSMS++
Sbjct: 705 EQET-LLYSTKEEQLGLLHQVLSASDADAEEEHVPEDGVDAVAKPANSKFARKQGSMSSI 763
Query: 472 SGAQGMVYM 480
SGAQ Y+
Sbjct: 764 SGAQNQAYL 772
>gi|154317790|ref|XP_001558214.1| hypothetical protein BC1G_02878 [Botryotinia fuckeliana B05.10]
Length = 845
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/493 (55%), Positives = 355/493 (72%), Gaps = 24/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+L ++L+P AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 331 VLEEYDFRNDEVNPNLEIDLRPSAQIRHYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 390
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I I FTSD KE+F + G++VTT
Sbjct: 391 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPADIAVFTSDHKEKFTRSTGIIVTT 450
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV R+ +++K+++ + +REWGL+L+DEVHVVPA +FRKV S K+H KLGLTAT
Sbjct: 451 YSMVTQTRARAFDAQKMMDFLTSREWGLMLLDEVHVVPAQIFRKVTSSIKTHSKLGLTAT 510
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW++L G IA VQCAEVWCPMT EF SEYLK S+
Sbjct: 511 LLREDDKIEDLNFLIGPKLYEANWMELAAQGHIARVQCAEVWCPMTTEFHSEYLKAP-SR 569
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ + MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA KL K IYG T
Sbjct: 570 KQGLISTMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVYALHVYAQKLGKVFIYGGTVQT 628
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 629 ERLRILENFQHNPNINTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 688
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT+EM+YS+KRQ FL+DQGY+FK IT L +
Sbjct: 689 RR-------NDEGFNAFFYSLVSKDTKEMYYSSKRQAFLVDQGYAFKAITHLQGIEDLPG 741
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK------------ARRIAGSM 468
L+++ ++ LL V+ D E+ ED D H+ RR AG +
Sbjct: 742 LAFNTPQDRRELLQNVMLHNMDE---EKFQEDLRDDLFHRNDGKARPKKKSNVRRTAGKL 798
Query: 469 SAMSGAQGMVYME 481
+ ++G Q M Y+E
Sbjct: 799 ADLAGGQDMAYVE 811
>gi|407925762|gb|EKG18743.1| Xeroderma pigmentosum group B protein (XP-B) [Macrophomina
phaseolina MS6]
Length = 763
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 271/489 (55%), Positives = 348/489 (71%), Gaps = 12/489 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDFRND N +L ++++P + RPYQE++L+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 253 LTEEYDFRNDFANANLEIDIRPGVEIRPYQEQALTKMFGNGRARSGIIVLPCGAGKTLVG 312
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC ++K C+ L T+ +SV QW +F WS I I FT++ K+ F GN GV+++T
Sbjct: 313 ITAACTVRKGCIVLCTSTMSVLQWRDEFIKWSNINPSDIAVFTAEQKDFFSGNTGVLIST 372
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
YNM+A RS +S+K+++ I REWGL+++DEVHVVPA MF +V SH KLGLTAT
Sbjct: 373 YNMIAMNRTRSYDSQKVMDFITQREWGLMVLDEVHVVPAEMFSRVTHAVPSHAKLGLTAT 432
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW +L + GFIA V C+EVWC MT EF++EYLK +
Sbjct: 433 LLREDDKINDLNFLIGPKLYEANWQELSENGFIAKVICSEVWCQMTTEFYAEYLKAKTVN 492
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK LY MNP KF+AC+FLI +HE +RGDK IVF+DN++AL YA L K IYG TS+
Sbjct: 493 KKSLLYTMNPRKFQACQFLIDYHE-KRGDKTIVFSDNVYALKIYAKTLGKAFIYGGTSNQ 551
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++LQ F + + TIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 552 ERQQVLQNFMYNEKVKTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 611
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGYSF+VIT L ++
Sbjct: 612 RR-------NDEGFNAFFYSLVSKDTTEMFYSSKRQAFLVDQGYSFRVITRLQGIENLPG 664
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDE----DADDIALHKARRIAGSMSAMSGAQG 476
L + E+ LL V+ D A +E+ D+ + RR AG++S +SG Q
Sbjct: 665 LVHATPQERRELLTDVMLQNDVAGEVEKNDDLFGRRQGNRFKKGVRRTAGTLSELSGGQD 724
Query: 477 MVYMEYRYD 485
M YMEY D
Sbjct: 725 MAYMEYNRD 733
>gi|347831594|emb|CCD47291.1| similar to TFIIH basal transcription factor complex helicase XPB
subunit [Botryotinia fuckeliana]
Length = 845
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/493 (55%), Positives = 355/493 (72%), Gaps = 24/493 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND VNP+L ++L+P AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 331 VLEEYDFRNDEVNPNLEIDLRPSAQIRHYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 390
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I I FTSD KE+F + G++VTT
Sbjct: 391 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPADIAVFTSDHKEKFTRSTGIIVTT 450
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV R+ +++K+++ + +REWGL+L+DEVHVVPA +FRKV S K+H KLGLTAT
Sbjct: 451 YSMVTQTRARAFDAQKMMDFLTSREWGLMLLDEVHVVPAQIFRKVTSSIKTHSKLGLTAT 510
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANW++L G IA VQCAEVWCPMT EF SEYLK S+
Sbjct: 511 LLREDDKIEDLNFLIGPKLYEANWMELAAQGHIARVQCAEVWCPMTTEFHSEYLKAP-SR 569
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ + MNP KF+AC+FLI +HE +RGDKIIVF+DN++AL YA KL K IYG T
Sbjct: 570 KQGLISTMNPRKFQACQFLIDYHE-KRGDKIIVFSDNVYALHVYAQKLGKVFIYGGTVQT 628
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 629 ERLRILENFQHNPNINTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 688
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT+EM+YS+KRQ FL+DQGY+FK IT L +
Sbjct: 689 RR-------NDEGFNAFFYSLVSKDTKEMYYSSKRQAFLVDQGYAFKAITHLQGIEDLPG 741
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK------------ARRIAGSM 468
L+++ ++ LL V+ D E+ ED D H+ RR AG +
Sbjct: 742 LAFNTPQDRRELLQNVMLHNMDE---EKFQEDLRDDLFHRNDGKARPKKKSNVRRTAGKL 798
Query: 469 SAMSGAQGMVYME 481
+ ++G Q M Y+E
Sbjct: 799 ADLAGGQDMAYVE 811
>gi|325189553|emb|CCA24040.1| unknown putative [Albugo laibachii Nc14]
Length = 788
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 281/493 (56%), Positives = 348/493 (70%), Gaps = 43/493 (8%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND PD+ M+LKP + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+L G
Sbjct: 309 LMEEYDFRNDKTIPDIEMDLKPTTRIREYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTG 368
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AA IKKSCLCL T+AVSV+QW QFK+W+ I + +I RFTS +K+ N+GV+VTT
Sbjct: 369 VTAASTIKKSCLCLCTSAVSVEQWTSQFKMWTNIPESKIARFTSVAKDYIDPNSGVIVTT 428
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AFGGKR+ SE++++ I+ REWG LL+DEVHVVPA MFRKVI HCKLGLTAT
Sbjct: 429 YTMIAFGGKRARASEEVMQLIQGREWGSLLLDEVHVVPAKMFRKVIGSIACHCKLGLTAT 488
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK-ENS 239
LVRED+ I DLNFLIGPKLYEANW+DL + GF+ANV C EVWCPMT EF+ EYLK+ +N+
Sbjct: 489 LVREDDLIGDLNFLIGPKLYEANWMDLTQSGFLANVSCVEVWCPMTGEFYREYLKENKNA 548
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+ LYV NPNKF A EFLI++HE +RGDKI+VF+D++ T +
Sbjct: 549 RKRALLYVANPNKFTAAEFLIQYHE-KRGDKILVFSDDVCLCTAF--------------- 592
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
+F+ S +N I +SKVGD SID+PEANVIIQ+SSH GSRRQEAQRLGRILR
Sbjct: 593 --------SFRNSPLVNVICISKVGDTSIDLPEANVIIQVSSHFGSRRQEAQRLGRILRP 644
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K GG +NAFFY+L+STDT EMFYS KRQQ+L+DQGY+FKV+T L S
Sbjct: 645 KAN----ATGG---FNAFFYTLISTDTHEMFYSNKRQQYLVDQGYTFKVVTELYDTKSFK 697
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAG----------SMS 469
+ + R + Q LL +VLSA ++ ++ DD L + G S+
Sbjct: 698 GV-FTRKEAQRELLEEVLSADVESAARDENAAIRDDEDLSRLELAGGADGGRKKKKMSLG 756
Query: 470 AMSGAQGMVYMEY 482
A+SGA G YMEY
Sbjct: 757 ALSGADGTKYMEY 769
>gi|429962851|gb|ELA42395.1| DNA repair helicase rad25 [Vittaforma corneae ATCC 50505]
Length = 659
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 273/490 (55%), Positives = 354/490 (72%), Gaps = 15/490 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDF+ND + P L+++LKP + R YQE L+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 182 LIEEYDFKNDEILPILDIDLKPTSHIRSYQEICLNKMFGNGRARSGIIVLPCGAGKTLVG 241
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKS L L T+AVSV+QW ++TI ++I RFTSD KE F GN GV++TT
Sbjct: 242 ITAISTIKKSALVLCTSAVSVEQWRQSTLNFTTIAANKIARFTSDRKEWFEGNVGVLITT 301
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A+ GKRS E++K++ I++ EWGL+++DEVHVVPA MFRK +S HCKLGLTAT
Sbjct: 302 YSMMAYSGKRSYEAQKLMNLIQSHEWGLMILDEVHVVPAQMFRKTVSAIPHHCKLGLTAT 361
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+ AEVWC MT EF+ EYL ++S+
Sbjct: 362 LVREDDKIEDLNFLIGPKLYEADWQDLSVQGHIAKVEGAEVWCNMTAEFYREYL-IQSSR 420
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K++ L +MNP K + CE+LI HE +RGDKIIVF+D++ AL EYA K+ KP IYG TS
Sbjct: 421 KRRILSIMNPTKIQICEYLIEKHE-KRGDKIIVFSDSVLALMEYAKKMGKPFIYGPTSQT 479
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 480 ERMRILKQFQTNPQINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRVLRAK 539
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +FYSLVS DT+EM YS KRQQFL+DQGYSF +IT +P + +
Sbjct: 540 KR-------NDPNFRVYFYSLVSKDTEEMVYSAKRQQFLVDQGYSFNIITEMPEVMNREN 592
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
Y +Q LL +L A ++ + E+L ED A G MS +SGA+GM Y+
Sbjct: 593 RLYKTKSQQKELLAIILMASEEDLTSEELSED------EMADYNIGKMSVLSGAEGMAYV 646
Query: 481 EYRYDPWQKQ 490
E + + + K+
Sbjct: 647 ERKKEAYLKK 656
>gi|405957836|gb|EKC24016.1| TFIIH basal transcription factor complex helicase XPB subunit
[Crassostrea gigas]
Length = 493
Score = 550 bits (1418), Expect = e-154, Method: Compositional matrix adjust.
Identities = 272/474 (57%), Positives = 352/474 (74%), Gaps = 21/474 (4%)
Query: 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77
++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVGV+AAC ++K +CLAT+
Sbjct: 12 IDLKPSTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVGVTAACTVRKRAICLATS 71
Query: 78 AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN--------AGVVVTTYNMVAFGGK 129
V+V+QW QFK+WST D ICRFTSD+K++ GN + ++++TY+M+A K
Sbjct: 72 GVAVEQWKQQFKMWSTADDSIICRFTSDAKDKPIGNCIFVSKEGSSILISTYSMLAHSTK 131
Query: 130 RSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERIT 189
RS E+EK++E ++++EWG++++DEV +PA MFR+V+++ +HCKLGLTATLVRED++I
Sbjct: 132 RSWEAEKVMEWMQSQEWGIMILDEVQTIPAKMFRRVLTIVNAHCKLGLTATLVREDDKIA 191
Query: 190 DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249
DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM EF+ EYL + S+KK L V+N
Sbjct: 192 DLNFLIGPKLYEANWMELQNNGYIARVQCAEVWCPMAPEFYREYLNTK-SQKKLLLAVVN 250
Query: 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAF 309
PNKFRAC+FLIR+HE +R DKIIVF+DN+FAL YA+KL KP +YG TS ER +ILQ F
Sbjct: 251 PNKFRACQFLIRYHE-RRNDKIIVFSDNVFALKSYAIKLNKPYLYGPTSQGERMQILQNF 309
Query: 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 369
+ +NTIF+SKV D S D+PEANV+IQIS+H GSRRQEAQR+GRILRAK
Sbjct: 310 VHNPKVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRMGRILRAKK------GA 363
Query: 370 GKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQ 429
EEYNAFFYSLVS DT EM +S KRQ+FL++QGY++KVIT L + A L Y +EQ
Sbjct: 364 VAEEYNAFFYSLVSQDTMEMHFSLKRQRFLVNQGYAYKVITKLAGMEEEA-LGYSTKEEQ 422
Query: 430 LALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEYR 483
LL V +A + E++ + + K GSMS+MSGA +YME+R
Sbjct: 423 AKLLQAVCAATEQDAEEERVIGEGGFLVSRK----VGSMSSMSGADDNLYMEFR 472
>gi|449298112|gb|EMC94129.1| hypothetical protein BAUCODRAFT_221487 [Baudoinia compniacensis
UAMH 10762]
Length = 852
Score = 548 bits (1413), Expect = e-153, Method: Compositional matrix adjust.
Identities = 270/493 (54%), Positives = 352/493 (71%), Gaps = 19/493 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDFR D N L+++LKP Q R YQE +LSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 331 LTEEYDFRADEQNATLDIDLKPQTQIRYYQEHALSKMFGNGRARSGIIVLPCGAGKTLVG 390
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC KKS + L T+A S QW +F WS + D + FTS K R A ++V T
Sbjct: 391 ITAACTEKKSVIVLCTSATSAGQWRAEFIKWSNVNPDDVIIFTSTEKGRVPNRACIIVCT 450
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +R+ +S++ +++I +REWGL+++DEVHVVPA MFR+V K+H KLGLTAT
Sbjct: 451 YSMVTQNTRRAHDSKQTMDQITSREWGLMVLDEVHVVPAEMFRRVTERIKTHSKLGLTAT 510
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL L + G IA VQCAEVWCPMT EF+SEY++ + +
Sbjct: 511 LLREDDKIKDLNFLIGPKLYEANWLQLSEEGHIARVQCAEVWCPMTTEFYSEYIQAQTTN 570
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L +MNP KF+AC+FLI FHE +RGDKIIVF+DN++AL +YA L+KP IYG T
Sbjct: 571 KKSLLSIMNPRKFQACQFLIDFHE-RRGDKIIVFSDNVYALKQYAEGLKKPYIYGDTGQR 629
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +LQ F+ + ++TIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 630 ERDLVLQNFQFNDAVSTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAK 689
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT L D D
Sbjct: 690 RR-------NDEGFNAFFYSLVSKDTNEMYYSSKRQAFLVDQGYAFKVITHLNGIDRMPD 742
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKA---------RRIAGSMS 469
L + +E++ LL VL + A E++ +D +D K+ +R AG+++
Sbjct: 743 LRFSTQEERMTLLTDVLLQSETAGDEEKIVDDLFSDRATFRKSGVGKKGSGVKRQAGTLA 802
Query: 470 AMSGAQGMVYMEY 482
+++G + M Y+EY
Sbjct: 803 SLAGGEDMAYLEY 815
>gi|341890534|gb|EGT46469.1| hypothetical protein CAEBREN_17583 [Caenorhabditis brenneri]
Length = 797
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 277/502 (55%), Positives = 357/502 (71%), Gaps = 36/502 (7%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NP+L ++LKP RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 290 LLAEYDFRNDTLNPNLGIDLKPSTTLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 349
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+A + K CL LA + VSV+QW QFKLWSTIQD Q+ RFT ++K+ A
Sbjct: 350 VTAVTTVNKRCLVLANSNVSVEQWRAQFKLWSTIQDKQLVRFTREAKDPAPSGADASKPV 409
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ G+R+ ++E+ ++ I +EWGLLL+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 410 VCISTYSMVAYSGRRTLQAEEAMKFIEKQEWGLLLLDEVHTIPAKMFRRVLTIVQAHCKL 469
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPMT F+S YL+
Sbjct: 470 GLTATLVREDDKITDLNFLIGPKIYEANWMELQKAGHIAKVQCAEVWCPMTSAFYSYYLR 529
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ + +K L VMNPNKFR C+FLI+FHE +R DKIIVF+DN+FAL +YA+++ KP +YG
Sbjct: 530 SQIA-RKLLLAVMNPNKFRICQFLIKFHE-RRNDKIIVFSDNVFALKKYAIEMSKPFLYG 587
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
TS ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+H GSRRQEAQRLGR
Sbjct: 588 ETSQNERMKILQNFQYNPRVNTIFVSKVADTSFDLPEANVLIQISAHGGSRRQEAQRLGR 647
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
ILRAK D ++NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ LP
Sbjct: 648 ILRAKKHSTD-------QFNAFFYSLVSQDTVEMGYSRKRQRFLVNQGYAYKVVNKLPGM 700
Query: 416 DS------------------GADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA 457
+S A +E + +L VL D + E+ D
Sbjct: 701 ESEDLKLGTKELQLQLLSQVLATSDADAEEEDIKVLLVVLYYADYHYNFQ---EELADGT 757
Query: 458 LHKARRIAGSMSAMSGAQGMVY 479
+ ARR A +M++MSG QG Y
Sbjct: 758 IRIARREA-TMASMSGGQGAQY 778
>gi|300707502|ref|XP_002995956.1| hypothetical protein NCER_101030 [Nosema ceranae BRL01]
gi|263505385|sp|C4V922.1|RAD25_NOSCE RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|239605203|gb|EEQ82285.1| hypothetical protein NCER_101030 [Nosema ceranae BRL01]
Length = 659
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 273/481 (56%), Positives = 345/481 (71%), Gaps = 15/481 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDF+ND V ++LKP R YQE L+KMF NGRARSGIIVLPCG+GK+LVG
Sbjct: 179 LIEEYDFKNDTVLESFFIDLKPSTMIRSYQETCLNKMFCNGRARSGIIVLPCGSGKTLVG 238
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKSCL L T+AVSV+QW Q L++ I D ICRFTS+ KE ++ G+++TT
Sbjct: 239 ITALTTIKKSCLILCTSAVSVEQWRQQTMLFTNISGDNICRFTSEYKEWYKDKCGIIITT 298
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ I++ EWGLLL+DEVHVVPA MFRKVISL HCKLGLTAT
Sbjct: 299 YTMLAYNGKRSPEAQKIMDLIQSTEWGLLLLDEVHVVPAMMFRKVISLVTHHCKLGLTAT 358
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+C EVWC MT EF+ EYL + S+
Sbjct: 359 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIAKVECFEVWCGMTGEFYKEYL-IQTSR 417
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ L +MNP KF+ACE+LI HE +GDKIIVF+D++ AL YA+KL KP IYG T
Sbjct: 418 KKRLLSIMNPTKFQACEYLISRHE-AKGDKIIVFSDSVAALKSYALKLGKPFIYGPTGQT 476
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 477 ERMRILKQFQTNPLINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 536
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ FFYSLVS DT EMFYS+KRQQFL+DQGYSF +IT +P +
Sbjct: 537 RR-------NDPDFKVFFYSLVSKDTDEMFYSSKRQQFLVDQGYSFNIITEIPEIYKNEN 589
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
Y +Q LL VL + D + + + D ++I ++ +G + +G GM YM
Sbjct: 590 RVYKSKSQQKELLVSVLLSSDKELESDT-EADNEEIGVY-----SGILKGSTGVDGMAYM 643
Query: 481 E 481
E
Sbjct: 644 E 644
>gi|402086817|gb|EJT81715.1| DNA repair helicase RAD25 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 818
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 275/491 (56%), Positives = 353/491 (71%), Gaps = 20/491 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND++N DL+++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVGV
Sbjct: 301 LEEYDFRNDHMNADLDIDLRPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGV 360
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + LAT+ +SV QW +F WS I D + F+SD K F GN G++VTTY
Sbjct: 361 TAACTIKKGVVILATSTMSVIQWRAEFLKWSNINPDSVAVFSSDQKNTFDGNTGIIVTTY 420
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
MV KRS +S K+++ ++NREWGL+L+DEVHVVPA+MFR+V+ K+H KLGLTATL
Sbjct: 421 AMVTNARKRSHDSAKMMDFLKNREWGLMLLDEVHVVPANMFRRVVGTIKAHSKLGLTATL 480
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + GFIA VQCAEVWCPM+ EF+ +YL K+
Sbjct: 481 LREDDKIEDLNFLIGPKLYEANWMELSEQGFIARVQCAEVWCPMSPEFYEQYLAAP-PKQ 539
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ NP KF+AC++LI++HE RGDKIIVF+D++ AL YA KL +P +YG TS E
Sbjct: 540 RLLFCATNPTKFQACQYLIKYHE-ARGDKIIVFSDDVAALKMYAFKLERPFLYGDTSESE 598
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + NT+FLSK+GD S+D+PEA +IQISS GSRRQEAQRLGRILRAK
Sbjct: 599 RQQILELFRSHPETNTLFLSKIGDTSLDLPEATCLIQISSQYGSRRQEAQRLGRILRAKR 658
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E AG +NAFFY+LVS DT EM +++KRQ FL DQGY+FKVIT L + L
Sbjct: 659 RNE---AG----FNAFFYTLVSKDTAEMNFASKRQAFLADQGYAFKVITQLKDLEKTPGL 711
Query: 422 SYHRLDEQLALLGKVLSAGDDA--VGLEQLDEDADDIALH---------KARRIAGSMSA 470
++ E+ LL KVL+ + V E+ +AD + ARR AG +S
Sbjct: 712 AFATAQERRELLLKVLNDKEHKALVEAEKAALEADGNMFYGTDGRPMRRAARRTAGMLSD 771
Query: 471 MSGAQGMVYME 481
G Q M Y+E
Sbjct: 772 YGGGQNMAYVE 782
>gi|378728720|gb|EHY55179.1| DNA excision repair protein ERCC-3 [Exophiala dermatitidis
NIH/UT8656]
Length = 852
Score = 546 bits (1407), Expect = e-153, Method: Compositional matrix adjust.
Identities = 257/451 (56%), Positives = 342/451 (75%), Gaps = 9/451 (1%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
+ EYDF +D+ NP L ++L+P Q RPYQEK+LSKMFGNGR +SGIIVLPCGAGK+LVG+
Sbjct: 317 ISEYDFADDHENPTLPIDLRPQTQIRPYQEKALSKMFGNGRGKSGIIVLPCGAGKTLVGI 376
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+A C IKKS + L T+A+S QWA +FK WS ++++ I F++ K RF G+AGV+VTTY
Sbjct: 377 TAGCHIKKSIVVLCTSAMSSYQWANEFKKWSDVKEEDIAVFSASEKRRFTGDAGVLVTTY 436
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M+ GGKR+ +++++++ + +EWGL+++DEVHVVPA MFRKV ++HCKLGLTATL
Sbjct: 437 SMITAGGKRAYDTQQMMDWVYRKEWGLMILDEVHVVPAKMFRKVGENIRAHCKLGLTATL 496
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++ITDLNF+IGPKLYEANW++L G IA VQCAEVWCPM+ EF+ EY +KE ++K
Sbjct: 497 LREDDKITDLNFIIGPKLYEANWMELADQGHIAKVQCAEVWCPMSMEFYQEY-QKETTRK 555
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ Y+MNP K++ C++LI +HE +RGDKIIVF+DNLFAL YA+ ++KP IYG TS+ E
Sbjct: 556 QALYYIMNPVKYQVCQYLIDYHE-KRGDKIIVFSDNLFALQHYAVTMKKPFIYGDTSNQE 614
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 615 RISILENFQHNELINTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 674
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EM YS KRQ FL+DQGY+FK IT L L
Sbjct: 675 R-------NDEGFNAFFYSLVSKDTTEMAYSAKRQAFLVDQGYAFKTITHLAGMSEMPGL 727
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED 452
+Y E+ LL V+ + A +E++D++
Sbjct: 728 AYTTARERNELLAHVMLQQETAADVEKVDDN 758
>gi|403352874|gb|EJY75962.1| Transcription factor IIH subunit [Oxytricha trifallax]
gi|403372236|gb|EJY86011.1| Transcription factor IIH subunit [Oxytricha trifallax]
Length = 593
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 270/447 (60%), Positives = 325/447 (72%), Gaps = 12/447 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDF+ D PDL +ELK Q R YQE+SLSKMF NGRARSG+IVLPCGAGK+L G
Sbjct: 106 LIEEYDFKRDQTIPDLKIELKSTTQIRSYQEQSLSKMFSNGRARSGVIVLPCGAGKTLAG 165
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF------RGNA 114
+ AAC KKS + L T+ VSV QW QF WS I ++CRFTS +K+ A
Sbjct: 166 IIAACTAKKSTMILCTSDVSVQQWRQQFYQWSNIAG-KVCRFTSRTKDPMFESKGPDSEA 224
Query: 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174
G+V+++YNM+A+ G RS +++KI++ IRN +WGLL++DEV VVPA MFRKV+++ KSHCK
Sbjct: 225 GIVISSYNMIAYQGSRSGQTQKIMDTIRNTDWGLLILDEVQVVPAEMFRKVLAICKSHCK 284
Query: 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL 234
LGLTATLVRED +I DLNFLIGPKLYEANWLDL + GF+A VQC EVWC MT EF+ EYL
Sbjct: 285 LGLTATLVREDNKIQDLNFLIGPKLYEANWLDLQEQGFLARVQCIEVWCEMTTEFYREYL 344
Query: 235 KKE-NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMI 293
+ KQ LYV NPNKF AC++LI HE RGDKIIVF+DNLFAL YA KL+KP I
Sbjct: 345 NHNLKPRMKQVLYVNNPNKFLACQYLINLHES-RGDKIIVFSDNLFALKMYAKKLKKPYI 403
Query: 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRL 353
G S ER IL F+ + ++NTIFLSKVGD SID+P ANVIIQISSH SRRQEAQRL
Sbjct: 404 SGDVSQSERMGILHYFQKTNEINTIFLSKVGDTSIDLPGANVIIQISSHFASRRQEAQRL 463
Query: 354 GRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
GRILR K E + EE+NA+FYSLVST+TQEM+Y+ KRQQFLIDQGY F+VI LP
Sbjct: 464 GRILRPKQSAEKQAYSNSEEFNAYFYSLVSTNTQEMYYADKRQQFLIDQGYYFEVIQELP 523
Query: 414 ---PPDSGADLSYHRLDEQLALLGKVL 437
P L + EQ+ L +L
Sbjct: 524 FQKDPLQLQKLQMTTIREQVDFLTSIL 550
>gi|342877523|gb|EGU78974.1| hypothetical protein FOXB_10508 [Fusarium oxysporum Fo5176]
Length = 756
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 272/491 (55%), Positives = 355/491 (72%), Gaps = 22/491 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR DNVNPDL+++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 245 ILEEYDFRYDNVNPDLDIDLRPNIQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 304
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+K + L +++VS QW +F WS I + I FTSDSKE F G+ GV+VTT
Sbjct: 305 ITAACTIRKGVIVLCSSSVSAVQWRNEFLKWSNINPEDITTFTSDSKEEFSGSTGVIVTT 364
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +R+ +S+K+++ + REWGL+L+DEVHVVPA+MFR+VIS K+H KLGLTAT
Sbjct: 365 YSMVTNSRERAHDSKKMMDFLAGREWGLMLLDEVHVVPANMFRRVISSIKTHSKLGLTAT 424
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I LNFLIGPKLYEANW++L + G IA VQCAEVWC M F+ +YL+ +S+
Sbjct: 425 LLREDDKIDHLNFLIGPKLYEANWMELSQQGHIAKVQCAEVWCSMPTVFYEQYLQV-SSR 483
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +NP+KF+AC+FLI +HE RGDKIIVF+D L++L YA KL++ +IYG TS
Sbjct: 484 MKRTLAAINPSKFQACQFLINYHE-ARGDKIIVFSDELYSLKLYAYKLKRYLIYGGTSQE 542
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L F+ + ++NT+FLSK+GD S+D+PEA +IQISS GSRRQEAQRLGRILRAK
Sbjct: 543 ERLRVLDHFRHNPEVNTLFLSKIGDTSLDLPEATCLIQISSQFGSRRQEAQRLGRILRAK 602
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM +++KRQ FLIDQGY+FKVIT L + D
Sbjct: 603 RR-------NDEGFNAFFYSLVSKDTSEMHFASKRQAFLIDQGYAFKVITRLVGIEKTPD 655
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI----------ALHKARRIAGSMSA 470
L++ EQ LL L + AV E ADD+ + R +AG +
Sbjct: 656 LAFRTAAEQQELLQGALVDNETAVDDEFA---ADDLWGGERSGGKGRKNTVRHVAGYLDQ 712
Query: 471 MSGAQGMVYME 481
+SG M Y+E
Sbjct: 713 LSGVHDMAYIE 723
>gi|360044168|emb|CCD81715.1| putative rad25/xp-B DNA repair helicase [Schistosoma mansoni]
Length = 769
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/412 (61%), Positives = 325/412 (78%), Gaps = 8/412 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D N D+ ++LK RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 318 LLTEYDFRLDRANKDILIDLKASTTLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 377
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC I+K L T+ V+V+QW QFKLWSTI+D QI RFTSD+K+R N+ + ++T
Sbjct: 378 VTAACTIRKPTFVLCTSGVAVEQWRAQFKLWSTIEDGQILRFTSDAKDRPNINSHICIST 437
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A KRS E+++++ IR++EWGL+++DEVH +PA MFR+V++L ++HCKLGLTAT
Sbjct: 438 YSMIAHSAKRSYEADRMMNWIRSQEWGLMILDEVHTIPAKMFRRVLTLVQAHCKLGLTAT 497
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANWL+L + GFIA VQCAEVWCP+T EF+ EYL + S
Sbjct: 498 LVREDDKITDLNFLIGPKLYEANWLELQQRGFIARVQCAEVWCPVTPEFYREYLNMK-SM 556
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L MNPNKFR CE+LIR+HE +R DKII+F+DN+FAL YA K+ +P +YG T
Sbjct: 557 KKLLLTAMNPNKFRVCEYLIRYHE-RRNDKIIIFSDNVFALKYYATKMGRPFLYGPTGQA 615
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + ++ IF+SKV DNS D+PEA V+IQIS+H GSRRQEAQRLGRILRAK
Sbjct: 616 ERMQILQNFQHNPNVPAIFVSKVADNSFDLPEATVLIQISAHGGSRRQEAQRLGRILRAK 675
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
++ E YNAFFYSLVS DT EM Y+ KRQ+FL++QGYS+KVI ++
Sbjct: 676 RGMD------AEAYNAFFYSLVSQDTMEMQYALKRQRFLVNQGYSYKVIYNI 721
>gi|256085925|ref|XP_002579160.1| rad25/xp-B DNA repair helicase [Schistosoma mansoni]
Length = 722
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 255/412 (61%), Positives = 325/412 (78%), Gaps = 8/412 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D N D+ ++LK RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 318 LLTEYDFRLDRANKDILIDLKASTTLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 377
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC I+K L T+ V+V+QW QFKLWSTI+D QI RFTSD+K+R N+ + ++T
Sbjct: 378 VTAACTIRKPTFVLCTSGVAVEQWRAQFKLWSTIEDGQILRFTSDAKDRPNINSHICIST 437
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A KRS E+++++ IR++EWGL+++DEVH +PA MFR+V++L ++HCKLGLTAT
Sbjct: 438 YSMIAHSAKRSYEADRMMNWIRSQEWGLMILDEVHTIPAKMFRRVLTLVQAHCKLGLTAT 497
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++ITDLNFLIGPKLYEANWL+L + GFIA VQCAEVWCP+T EF+ EYL + S
Sbjct: 498 LVREDDKITDLNFLIGPKLYEANWLELQQRGFIARVQCAEVWCPVTPEFYREYLNMK-SM 556
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L MNPNKFR CE+LIR+HE +R DKII+F+DN+FAL YA K+ +P +YG T
Sbjct: 557 KKLLLTAMNPNKFRVCEYLIRYHE-RRNDKIIIFSDNVFALKYYATKMGRPFLYGPTGQA 615
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ F+ + ++ IF+SKV DNS D+PEA V+IQIS+H GSRRQEAQRLGRILRAK
Sbjct: 616 ERMQILQNFQHNPNVPAIFVSKVADNSFDLPEATVLIQISAHGGSRRQEAQRLGRILRAK 675
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
++ E YNAFFYSLVS DT EM Y+ KRQ+FL++QGYS+KVI ++
Sbjct: 676 RGMD------AEAYNAFFYSLVSQDTMEMQYALKRQRFLVNQGYSYKVIYNI 721
>gi|302928024|ref|XP_003054618.1| hypothetical protein NECHADRAFT_90467 [Nectria haematococca mpVI
77-13-4]
gi|256735559|gb|EEU48905.1| hypothetical protein NECHADRAFT_90467 [Nectria haematococca mpVI
77-13-4]
Length = 807
Score = 539 bits (1389), Expect = e-150, Method: Compositional matrix adjust.
Identities = 265/447 (59%), Positives = 338/447 (75%), Gaps = 9/447 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D NP+L ++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 326 ILEEYDFRFDRANPNLKIDLRPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 385
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKKS + L T++VS QW +F WS I I FT++SK FRG AG++VTT
Sbjct: 386 ITAACTIKKSVIVLCTSSVSAVQWRNEFLKWSNINPASITTFTAESKTIFRGRAGIIVTT 445
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS ES++++ + REWGL+L+DEVHVVPA++FR+VIS KSH KLGLTAT
Sbjct: 446 YSMVTNSRERSRESKEVMNFLAGREWGLMLLDEVHVVPANIFRQVISSIKSHSKLGLTAT 505
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I+ LNFLIGPKLYEANW++L + G IA VQCAEVWCPM EF+ YLK + +
Sbjct: 506 LLREDDKISHLNFLIGPKLYEANWMELSQQGHIAKVQCAEVWCPMPVEFYETYLKV-SIR 564
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L +NP KF+AC++LI +HE RGDKIIVF+D+L++L YA+KL K IYG TS
Sbjct: 565 MKRTLGAVNPFKFQACQYLINYHE-SRGDKIIVFSDDLYSLKLYAVKLGKAFIYGETSQE 623
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 624 ERMMILENFQRNPLINTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 683
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFY+LVS DTQEMFYS+KRQ FL+DQGY+FKVIT L S D
Sbjct: 684 RR-------NDEGFNAFFYTLVSKDTQEMFYSSKRQAFLVDQGYAFKVITQLDGMHSLPD 736
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLE 447
L++ + E+ LL + L + A+ E
Sbjct: 737 LAFSKASERQELLKRTLIDNEKAISEE 763
>gi|323452822|gb|EGB08695.1| hypothetical protein AURANDRAFT_521, partial [Aureococcus
anophagefferens]
Length = 634
Score = 537 bits (1383), Expect = e-150, Method: Compositional matrix adjust.
Identities = 253/424 (59%), Positives = 323/424 (76%), Gaps = 19/424 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDFR+D N L ++L+P + R YQEKSLSKMFGNGRARSGIIVLPCGAGK+L
Sbjct: 218 LAEEYDFRHDLDNAVLPVDLRPSTKIRSYQEKSLSKMFGNGRARSGIIVLPCGAGKTLTA 277
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
+ AA +K+S L L TNA +V QW QF LW+++ +I FT++ KE GV++TT
Sbjct: 278 IVAAATVKRSTLVLCTNATAVAQWKAQFALWTSLDPARISLFTAEVKEDLHPECGVLITT 337
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV+FGG+RS + E++IE ++ REWGL+L+DEVHVVPA FR+V+++ +HCKLGLTAT
Sbjct: 338 YHMVSFGGQRSLDGERLIEAVKAREWGLMLLDEVHVVPAQTFRRVLAVCNAHCKLGLTAT 397
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK---- 236
LVRED+ ITDLNFLIGPKLYEANW+DL K G +ANVQC EVWCPM F+ EYL+
Sbjct: 398 LVREDDLITDLNFLIGPKLYEANWMDLTKNGHLANVQCVEVWCPMAGPFYREYLRHGGCG 457
Query: 237 --------ENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288
+++ ++ LYVMNPNKFRACE+L+ +HE QRGDK+IVF+D++FAL +YA L
Sbjct: 458 QEAKPRAGGDARCRRLLYVMNPNKFRACEYLVHYHE-QRGDKVIVFSDDVFALLKYATAL 516
Query: 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQ 348
+P IYGAT ER +L +F+ + +NTI LSKVGD +ID+PEANVI+Q+SSH GSRRQ
Sbjct: 517 GRPAIYGATKEAERQAVLGSFRFNSLVNTICLSKVGDVAIDLPEANVIVQVSSHFGSRRQ 576
Query: 349 EAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
EAQRLGRILRAK + + +NAFFY+LVSTDT EMFYS KRQQ+L+DQGY+FKV
Sbjct: 577 EAQRLGRILRAKPSAD------GDGFNAFFYTLVSTDTAEMFYSAKRQQYLVDQGYTFKV 630
Query: 409 ITSL 412
+T L
Sbjct: 631 VTDL 634
>gi|452841426|gb|EME43363.1| hypothetical protein DOTSEDRAFT_72690 [Dothistroma septosporum
NZE10]
Length = 847
Score = 536 bits (1380), Expect = e-149, Method: Compositional matrix adjust.
Identities = 268/507 (52%), Positives = 350/507 (69%), Gaps = 16/507 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEYDF D N L+++L+P Q R YQE++L+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 330 LTEEYDFHADERNAKLDIKLRPVVQIRYYQEQALAKMFGNGRARSGIIVLPCGAGKTLVG 389
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I KS + L T+A+S QW +FK WS I D I FTS K+R AGV++ T
Sbjct: 390 ITAACTIAKSTIVLCTSAMSAVQWKEEFKKWSNIDPDDIVIFTSGEKQRLHQKAGVIICT 449
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +R+ +S +++ +I +REWGL+++DEVHVVPA MFR+V K+H KLGLTAT
Sbjct: 450 YSMVTQSTRRAHDSAQVMADITSREWGLMILDEVHVVPAEMFRRVTERIKTHSKLGLTAT 509
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL L + G IA VQCAEVWCPMT EF+ YL+ + +
Sbjct: 510 LLREDDKIKDLNFLIGPKLYEANWLQLSEEGHIARVQCAEVWCPMTTEFYKAYLEAKTTN 569
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ L MNP K++AC++LI +HE +RGDKIIVF+DN++AL YA L KP IYG TS
Sbjct: 570 KRSLLSTMNPRKYQACQYLIDYHE-RRGDKIIVFSDNVYALKRYAEGLTKPYIYGDTSQR 628
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +LQ F+ + ++TIFLSK+GD S+D+PEA +IQ+SSH GSRRQEAQRLGRILRAK
Sbjct: 629 ERELVLQNFQQNDAVSTIFLSKIGDTSLDLPEATCLIQVSSHYGSRRQEAQRLGRILRAK 688
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DT EM+YS+KRQ FL+DQGY+FKVIT
Sbjct: 689 RR-------NDEGFNAFFYSLVSKDTNEMYYSSKRQAFLVDQGYAFKVITHFKGLADMPG 741
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQL-DEDADDIALHKA-------RRIAGSMSAMS 472
L Y+ +++ LL V+ D A E + D D + K+ RR AG++S ++
Sbjct: 742 LHYNNQHDRMDLLQDVMLQSDTAGDAEDIKDSLWGDKNVSKSRKKGSGVRRQAGTLSNLA 801
Query: 473 GAQGMVYMEYRYDPWQKQLFKASSQIF 499
G M Y+E + K L K+ + F
Sbjct: 802 GGDSMAYIEGKKGAANKALAKSRNAFF 828
>gi|402594523|gb|EJW88449.1| DNA excision repair protein haywire [Wuchereria bancrofti]
Length = 781
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 324/418 (77%), Gaps = 14/418 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND N +L ++LK RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 284 LLAEYDFRNDTFNENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 343
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+AA + K CL LAT+ VSV+QW QFKLWSTI+DDQ+ RFT ++++ +
Sbjct: 344 VTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSGSNANKPI 403
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ GKR+ +E+ ++ I +REWGL+L+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 404 VCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMFRRVLTIVRAHCKL 463
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPM+ EF+S YL+
Sbjct: 464 GLTATLVREDDKITDLNFLIGPKIYEANWMELEKAGQIAKVQCAEVWCPMSAEFYSYYLR 523
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ ++ L VMNPNKFR C+FLI++HE QR DKIIVF+DN+FAL +YA+++ KP +YG
Sbjct: 524 AQIG-RRLLLAVMNPNKFRICQFLIKYHE-QRNDKIIVFSDNVFALKKYAIEMDKPFLYG 581
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
T ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+ GSRRQEAQRLGR
Sbjct: 582 ETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPEANVLIQISAQGGSRRQEAQRLGR 641
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
ILRAK D +NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ LP
Sbjct: 642 ILRAKKNSGD-------GFNAFFYSLVSQDTVEMSYSRKRQRFLVNQGYAYKVVNRLP 692
>gi|401825205|ref|XP_003886698.1| Rad25-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
gi|337263116|gb|AEI69269.1| DNA repair helicase Rad25 [Encephalitozoon hellem]
gi|395459843|gb|AFM97717.1| Rad25-like DNA repair helicase [Encephalitozoon hellem ATCC 50504]
Length = 672
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 272/497 (54%), Positives = 349/497 (70%), Gaps = 16/497 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND V L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 184 LIEEYDFRNDKVLRSLKIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKSCL L T+AVSV+QW Q + ++ I D + RFTSD KE + + G+VVTT
Sbjct: 244 ITAISTIKKSCLVLCTSAVSVEQWRQQTQQFTNISPDNVGRFTSDHKEWPKDDCGIVVTT 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 304 YTMLAYTGKRSYEAQKIMDLIRKTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 363
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 364 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIAKVSCVEVWCGMTGDFYREYL-SQPTR 422
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 423 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 481
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 482 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 541
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ +FYSLVS DT EMFYS KRQQFLIDQGY+F ++T +P
Sbjct: 542 RR-------NDPDFKVYFYSLVSKDTDEMFYSNKRQQFLIDQGYTFTILTDIPEVHENEH 594
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
Y +Q LL VL A + + E+ D +A+ I A+ + ++SGA M Y+
Sbjct: 595 CVYRTKGQQRELLAGVLLASEKELESEESD-NAEGIVYSTAK-----LKSLSGADEMAYI 648
Query: 481 EYRYDPWQKQLFKASSQ 497
E R P K++ +
Sbjct: 649 E-RKGPQHHAFTKSNKK 664
>gi|170581278|ref|XP_001895614.1| helicase [Brugia malayi]
gi|158597374|gb|EDP35540.1| helicase, putative [Brugia malayi]
Length = 798
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 253/418 (60%), Positives = 323/418 (77%), Gaps = 14/418 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND N +L ++LK RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 301 LLAEYDFRNDTFNENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 360
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+AA + K CL LAT+ VSV+QW QFKLWSTI+DDQ+ RFT ++++ +
Sbjct: 361 VTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSGSNANKPI 420
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ GKR+ +E+ ++ I +REWGL+L+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 421 VCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMFRRVLTIVRAHCKL 480
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPKLYEANW++L K G IA VQCAEVWCPM+ EF+S YL+
Sbjct: 481 GLTATLVREDDKITDLNFLIGPKLYEANWMELEKAGQIAKVQCAEVWCPMSAEFYSYYLR 540
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ ++ L VMNPNKFR C+FLI++HE R DKIIVF+DN+FAL +YA+++ KP +YG
Sbjct: 541 AQIG-RRLLLAVMNPNKFRICQFLIKYHE-XRNDKIIVFSDNVFALKKYAIEMDKPFLYG 598
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
T ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+ GSRRQEAQRLGR
Sbjct: 599 ETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPEANVLIQISAQGGSRRQEAQRLGR 658
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
ILRAK D +NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ LP
Sbjct: 659 ILRAKKNSGD-------GFNAFFYSLVSQDTVEMSYSRKRQRFLVNQGYAYKVVNRLP 709
>gi|387596504|gb|EIJ94125.1| DNA repair helicase rad25, partial [Nematocida parisii ERTm1]
Length = 653
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/456 (56%), Positives = 328/456 (71%), Gaps = 9/456 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFR +N P L+++LKP R YQE SL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 184 LIEEYDFRTENTLPLLDIDLKPTTSIRTYQEFSLNKMFGNGRARSGIIVLPCGAGKTLVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
+ A C +K+SCL L T +VSV+QW Q K ++ ++D+ I TSD+KE+F G AG+VV+T
Sbjct: 244 IVALCTMKRSCLILCTTSVSVEQWKQQIKHFTNVKDEAIAILTSDTKEKFSGQAGIVVST 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MV++ GKRS E++KI++ + N EWGL++ DEVHVVPA+MFR+V+S SHCKLGLTAT
Sbjct: 304 YTMVSYSGKRSYETQKIMDFLTNTEWGLIIFDEVHVVPANMFRRVVSTIISHCKLGLTAT 363
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I DLNFLIGPKLYEA+WL+L G I+ V C EVWC MT EF+ +YL + +
Sbjct: 364 LVREDEKIEDLNFLIGPKLYEADWLNLSAQGHISKVCCTEVWCKMTGEFYKQYLVA-DIR 422
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ L MNP K + CE++I HE GDKIIVF+DN+F L YA+K KP IYG T
Sbjct: 423 KKRILATMNPTKIQMCEYIINKHE-ALGDKIIVFSDNVFTLKAYALKFGKPFIYGPTGQA 481
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ + +NTIFLSKVGD SID+PEA +IQIS H GSRRQE QRLGRILRAK
Sbjct: 482 ERMHILNQFRTNPKINTIFLSKVGDTSIDLPEATCLIQISGHFGSRRQETQRLGRILRAK 541
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + E + A+FY+LVS DT+E+ YST+R+QFLIDQGYSFK++ + +
Sbjct: 542 RRTD-------EGFTAYFYTLVSMDTEEVPYSTRRRQFLIDQGYSFKIVEEIKEMEENPP 594
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI 456
Y EQ LL +L A D + E D++ D I
Sbjct: 595 TVYRTKTEQNELLASILLASDRDIQTESEDDEIDRI 630
>gi|337263086|gb|AEI69254.1| DNA repair helicase [Encephalitozoon romaleae]
gi|396080809|gb|AFN82430.1| DNA repair helicase Rad25 [Encephalitozoon romaleae SJ-2008]
Length = 672
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/493 (54%), Positives = 345/493 (69%), Gaps = 16/493 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRNDNV L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 184 LIEEYDFRNDNVLRSLKIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKSCL L T+AVSV+QW Q + ++ I D + RFTSD KE R + G+VVTT
Sbjct: 244 ITAISTIKKSCLVLCTSAVSVEQWRQQTQQFTNISPDNVGRFTSDHKEWPRDDCGIVVTT 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 304 YTMLAYTGKRSYEAQKIMDLIRKTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 363
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 364 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIAKVSCVEVWCGMTGDFYREYL-SQPTR 422
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 423 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 481
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 482 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 541
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ +FYSLVS DT EMFYS+KRQQFLIDQGY+F ++T +P
Sbjct: 542 RR-------NDPDFRVYFYSLVSKDTDEMFYSSKRQQFLIDQGYTFTILTDIPEVHENEH 594
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
Y +Q LL VL A + + + + + A+ + +SGA M Y+
Sbjct: 595 CVYKTKGQQRELLAGVLLA-SEKELESEESGSEEGVVYNTAK-----LKNLSGADEMAYI 648
Query: 481 EYRYDPWQKQLFK 493
E R P + L K
Sbjct: 649 E-RKAPQRHTLTK 660
>gi|387594649|gb|EIJ89673.1| DNA repair helicase rad25 [Nematocida parisii ERTm3]
Length = 653
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 257/456 (56%), Positives = 328/456 (71%), Gaps = 9/456 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFR +N P L+++LKP R YQE SL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 184 LIEEYDFRTENTLPLLDIDLKPTTSIRTYQEFSLNKMFGNGRARSGIIVLPCGAGKTLVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
+ A C +K+SCL L T +VSV+QW Q K ++ ++D+ I TSD+KE+F G AG+VV+T
Sbjct: 244 IVALCTMKRSCLILCTTSVSVEQWKQQIKHFTNVKDEAIAILTSDTKEKFSGQAGIVVST 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y MV++ GKRS E++KI++ + N EWGL++ DEVHVVPA+MFR+V+S SHCKLGLTAT
Sbjct: 304 YTMVSYSGKRSYETQKIMDFLTNTEWGLIIFDEVHVVPANMFRRVVSTIISHCKLGLTAT 363
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVREDE+I DLNFLIGPKLYEA+WL+L G I+ V C EVWC MT EF+ +YL + +
Sbjct: 364 LVREDEKIEDLNFLIGPKLYEADWLNLSAQGHISKVCCTEVWCKMTGEFYKQYLVA-DIR 422
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK+ L MNP K + CE++I HE GDKIIVF+DN+F L YA+K KP IYG T
Sbjct: 423 KKRILATMNPTKIQMCEYIISKHE-ALGDKIIVFSDNVFTLKAYALKFGKPFIYGPTGQA 481
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL F+ + +NTIFLSKVGD SID+PEA +IQIS H GSRRQE QRLGRILRAK
Sbjct: 482 ERMHILNQFRTNPKINTIFLSKVGDTSIDLPEATCLIQISGHFGSRRQETQRLGRILRAK 541
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + E + A+FY+LVS DT+E+ YST+R+QFLIDQGYSFK++ + +
Sbjct: 542 RRTD-------EGFTAYFYTLVSMDTEEVPYSTRRRQFLIDQGYSFKIVEEIKEMEENPP 594
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI 456
Y EQ LL +L A D + E D++ D I
Sbjct: 595 TVYRTKTEQNELLASILLASDRDIQTESEDDEIDRI 630
>gi|312066345|ref|XP_003136226.1| helicase [Loa loa]
gi|307768612|gb|EFO27846.1| helicase [Loa loa]
Length = 798
Score = 530 bits (1364), Expect = e-147, Method: Compositional matrix adjust.
Identities = 252/418 (60%), Positives = 323/418 (77%), Gaps = 14/418 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND N +L ++LK RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 301 LLAEYDFRNDTFNENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 360
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+AA + K CL LAT+ VSV+QW QFKLWSTI+DDQ+ RFT ++++ +
Sbjct: 361 VTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSGSNANKPI 420
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ GKR+ +E+ ++ I +REWGL+L+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 421 VCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMFRRVLTIVRAHCKL 480
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPM+ EF+S YL+
Sbjct: 481 GLTATLVREDDKITDLNFLIGPKIYEANWMELEKAGQIAKVQCAEVWCPMSAEFYSYYLR 540
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ ++ L VMNPNKFR C+FLI +HE +R DKIIVF+DN+FAL +YA+++ KP +YG
Sbjct: 541 AQIG-RRLLLAVMNPNKFRICQFLIMYHE-RRNDKIIVFSDNVFALKKYAIEMDKPFLYG 598
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
T ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+ GSRRQEAQRLGR
Sbjct: 599 ETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPEANVLIQISAQGGSRRQEAQRLGR 658
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
ILRAK D +NAFFYSLVS DT EM YS KRQ+FL++QGY++KV+ LP
Sbjct: 659 ILRAKKNSGD-------GFNAFFYSLVSQDTVEMSYSRKRQRFLVNQGYAYKVVNRLP 709
>gi|156392034|ref|XP_001635854.1| predicted protein [Nematostella vectensis]
gi|156222952|gb|EDO43791.1| predicted protein [Nematostella vectensis]
Length = 734
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 263/460 (57%), Positives = 343/460 (74%), Gaps = 13/460 (2%)
Query: 26 PRPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
P PY S F G G + LP GAGK+LVGV+AAC ++K CL L T+ V+V+Q
Sbjct: 269 PHPYWSFSYHFFFKLGGGHMFLTCLYLPPGAGKTLVGVTAACTVRKRCLVLCTSGVAVEQ 328
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN 143
W QFKLWST+ IC FTSD+K++ + + ++TY+MV+ GKRS E+E+++ +++
Sbjct: 329 WKNQFKLWSTVNSRIICCFTSDAKDK-PTDCSIAISTYSMVSHMGKRSWEAEQVMSFLQS 387
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
+EWGL+++DEVH +PA FR+V+++ ++HCKLGLTATLVRED++I DLNFLIGPKLYEAN
Sbjct: 388 QEWGLMILDEVHTIPAKQFRRVLTVVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEAN 447
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W++L GFIA VQCAEVWCPMT EF+SEYL + ++K++ LYVMNPNKFR+CEFLIR+H
Sbjct: 448 WMELQNSGFIARVQCAEVWCPMTPEFYSEYLNIK-TRKRKLLYVMNPNKFRSCEFLIRYH 506
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E +R DK+IVF+DN+FAL YA+KL+KP IYG TS ER ILQ F+ + +NTIF+SKV
Sbjct: 507 E-RRNDKVIVFSDNVFALRNYAIKLQKPFIYGPTSQGERISILQNFQHNPLVNTIFISKV 565
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
GDNS D+PEANV+IQISSH GSRRQEAQRLGRILRAK + EEYNAFFY+LVS
Sbjct: 566 GDNSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKDM------AAEEYNAFFYTLVS 619
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDA 443
TDT+EM+YS+KRQ+FL++QGYSFKVIT L + +L+ EQ LL KVL+A D
Sbjct: 620 TDTEEMYYSSKRQRFLVNQGYSFKVITRLAGMEE-ENLNLSSKKEQHELLQKVLAASDVD 678
Query: 444 VGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEYR 483
E+ D +RR+ GSM++MSGA M+Y+EY+
Sbjct: 679 AEEEKTAADFGQKGGAVSRRV-GSMASMSGADDMIYLEYK 717
>gi|346978860|gb|EGY22312.1| DNA repair helicase RAD25 [Verticillium dahliae VdLs.17]
Length = 792
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/512 (53%), Positives = 354/512 (69%), Gaps = 54/512 (10%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D N +L ++L+P AQ RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 313 VLEEYDFRKDEFNANLEIDLRPGAQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 372
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGNAGVVVT 119
++AAC +KK + L T+++SV QW +F WS I+ + I FTSD+K + F G+ G++VT
Sbjct: 373 ITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIAAFTSDNKGQTFTGSTGIIVT 432
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV +RS E++K+++ +++REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 433 TYSMVTQTRERSHEAKKMMDFLQHREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 492
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I+DLNFLIGPKLYEANW++L + G IA VQCAEVWC M EF+ EYLK
Sbjct: 493 TLLREDDKISDLNFLIGPKLYEANWMELSQQGHIARVQCAEVWCSMPTEFYDEYLKAP-P 551
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K+ LY+MNP KF+AC++LI +HE RGDKIIVF+DN++AL YAMKL+K IYG T
Sbjct: 552 RKRSLLYIMNPAKFQACQYLINYHE-SRGDKIIVFSDNVYALKAYAMKLKKVFIYGETGQ 610
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER ++L+ F+ + +NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRA
Sbjct: 611 AERLQVLENFQHNPQVNTLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRA 670
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + E +NAFFYSLVS DT EMF+S+KRQ FL+DQ
Sbjct: 671 KRR-------NDEGFNAFFYSLVSKDTSEMFFSSKRQAFLVDQA---------------- 707
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHK-----------ARRIAGSM 468
E+ LL KVL + VG E+ E DD+ H ARR AG +
Sbjct: 708 --------ERRELLEKVLV---ENVGNEE--EFVDDL-FHSGTMGRKPKKKGARRTAGML 753
Query: 469 SAMSGAQGMVYMEYRYDPWQKQLFKASSQIFF 500
+SG Q M Y+E K K S FF
Sbjct: 754 GDLSGGQDMAYIEQNKKTKTK---KGESSAFF 782
>gi|290983477|ref|XP_002674455.1| predicted protein [Naegleria gruberi]
gi|284088045|gb|EFC41711.1| predicted protein [Naegleria gruberi]
Length = 818
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 278/484 (57%), Positives = 334/484 (69%), Gaps = 23/484 (4%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
L+EYDFRND N L ++LKP R YQEKSL+KMF NGRARSGIIVLPCGAGK+LVGV
Sbjct: 324 LDEYDFRNDKRNSSLVIDLKPTTTIRSYQEKSLNKMFSNGRARSGIIVLPCGAGKTLVGV 383
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN---AGVVV 118
+AA IKK L L N VSV QW QF+LWSTI DD I TS K + A V++
Sbjct: 384 TAASTIKKHTLVLCINTVSVFQWKNQFRLWSTIDDDSILVHTSQQKATLPKDPNKAVVLI 443
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TTY+M++F G+RSEES++++E I NREWGLL+ DEV V PA FR S K+HCKLGLT
Sbjct: 444 TTYSMISFKGRRSEESKQMMEYIENREWGLLMFDEVQVYPADSFR--ASHLKAHCKLGLT 501
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATL+RED + DLNFLIGPKLYEANWLDL K G +ANVQC EVWCPMT EF++EYL N
Sbjct: 502 ATLLREDNKQEDLNFLIGPKLYEANWLDLQKKGHLANVQCVEVWCPMTAEFYAEYL-SSN 560
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
K+ YVMNPNKFRACEFLIR+HE+ GDKIIVF+DN F L +YA+KL+ P IYG T
Sbjct: 561 YAKQSLYYVMNPNKFRACEFLIRYHEKH-GDKIIVFSDNTFTLEQYAIKLKLPYIYGKTR 619
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER +L FK S + NT+FLSKVGD +IDIPEA VIIQISSH GSRRQEAQRLGRILR
Sbjct: 620 ESERLDVLNRFK-SGNFNTVFLSKVGDTAIDIPEATVIIQISSHFGSRRQEAQRLGRILR 678
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K G ++ A+FYSLVS DT+EMF++TKRQQFL +QGYSF+V+ + S
Sbjct: 679 PKN-------GTNKQ--AYFYSLVSQDTKEMFFATKRQQFLTNQGYSFRVLADIQKYYSS 729
Query: 419 ADLSYHRL---DEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQ 475
+ + +++L L V +A D LE + D H S++ +SG
Sbjct: 730 NRVETKFMKTKEDELEFLKLVKNAKDVNGKLEDIPNDDFQSGSHSG---DTSLALLSGGA 786
Query: 476 GMVY 479
VY
Sbjct: 787 NEVY 790
>gi|393228723|gb|EJD36361.1| TFIIH basal transcription factor complex helicase XPB subunit
[Auricularia delicata TFB-10046 SS5]
Length = 684
Score = 524 bits (1350), Expect = e-146, Method: Compositional matrix adjust.
Identities = 267/458 (58%), Positives = 335/458 (73%), Gaps = 15/458 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
ML+EYDFR D +N +LN+ L RPYQE SL KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 237 MLQEYDFRKDVINRNLNIRLTTSGFVRPYQETSLRKMFGNGRARSGIIVLPCGAGKTLVG 296
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V AA I KSCL L T+AVS QW QFKLW+ I+D QI FTS+ ++ F+ +GV+++T
Sbjct: 297 VMAAGTINKSCLVLCTSAVSAGQWRHQFKLWAQIKDSQISLFTSEEQKEFQAPSGVLIST 356
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A KRS ++E+ +E + +REWGL+++DEVHVVPA+ FR V K+H KLGLTAT
Sbjct: 357 YSMIANTRKRSRDAERKMEFVSSREWGLVILDEVHVVPANTFRLVFGSIKAHAKLGLTAT 416
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DL+ LIGPKLYEANW DL G IANV CAEV CPM+ EF+ +YL+ S
Sbjct: 417 LVREDDKIVDLDHLIGPKLYEANWKDLAAQGHIANVLCAEVQCPMSPEFYHQYLRA-TSL 475
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
KK L+ MNP K +AC++L+ +HE +RGDKIIVF+DN+FAL YA KL++ I+G S V
Sbjct: 476 KKTLLHCMNPTKLQACQYLMDYHE-RRGDKIIVFSDNVFALEYYARKLKRLFIHGKVSQV 534
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER IL+ FK D+ TIFLSKVGD S+DIPEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 535 ERELILERFKEDPDIKTIFLSKVGDTSLDIPEATCLIQISSHFGSRRQEAQRLGRILRAK 594
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E E +NA+FYSLVS DT EM +STKRQQFL+DQGY+FKVIT L +
Sbjct: 595 RRSE-------EGFNAYFYSLVSKDTDEMVFSTKRQQFLVDQGYAFKVITRLDGIERFPG 647
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL 458
L++ +DE+ ALL +V A E+ E +D+A+
Sbjct: 648 LAFRTIDERWALLREVYHAQ------EKDGETGNDVAV 679
>gi|332814347|ref|XP_525907.3| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Pan troglodytes]
Length = 768
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 276/489 (56%), Positives = 342/489 (69%), Gaps = 54/489 (11%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 306 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 365
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 366 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 424
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA R G TA
Sbjct: 425 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAPGPRF----------QGTTAQ 474
Query: 181 LVREDERITDLNFLIGPKLYEANWL-DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
+ +WL D G+IA VQC EVWCPM+ EF+ EY+ + +
Sbjct: 475 I--------------------WDWLSDEQNNGYIAKVQCVEVWCPMSPEFYREYVAIK-T 513
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
KK+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 514 KKRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQ 572
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRA
Sbjct: 573 GERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRA 632
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K + EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L +
Sbjct: 633 KKGM------VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-E 685
Query: 420 DLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSG 473
DL++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSG
Sbjct: 686 DLAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSG 738
Query: 474 AQGMVYMEY 482
A VYMEY
Sbjct: 739 ADDTVYMEY 747
>gi|392513052|emb|CAD24977.2| DNA REPAIR HELICASE RAD25 [Encephalitozoon cuniculi GB-M1]
Length = 672
Score = 522 bits (1345), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/439 (58%), Positives = 323/439 (73%), Gaps = 9/439 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND V L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 184 LIEEYDFRNDKVLRSLQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKK+CL L T+AVSV+QW Q ++ + D + RFTSD KE + ++G+V+TT
Sbjct: 244 ITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDDSGIVITT 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 304 YTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 363
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 364 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIARVSCIEVWCGMTGDFYREYL-SQPTR 422
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 423 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 481
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 482 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 541
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ +FYSLVS DT EMFYS+KRQQFLIDQGY+F ++T +P
Sbjct: 542 RR-------NDPDFKVYFYSLVSKDTDEMFYSSKRQQFLIDQGYTFTILTDIPEVHENEH 594
Query: 421 LSYHRLDEQLALLGKVLSA 439
Y +Q LL VL A
Sbjct: 595 CVYKTKGQQRELLAGVLLA 613
>gi|85691085|ref|XP_965942.1| DNA repair helicase [Encephalitozoon cuniculi GB-M1]
gi|74697619|sp|Q8SSK1.1|RAD25_ENCCU RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
Length = 696
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/439 (58%), Positives = 323/439 (73%), Gaps = 9/439 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND V L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 208 LIEEYDFRNDKVLRSLQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 267
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKK+CL L T+AVSV+QW Q ++ + D + RFTSD KE + ++G+V+TT
Sbjct: 268 ITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDDSGIVITT 327
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 328 YTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 387
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 388 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIARVSCIEVWCGMTGDFYREYL-SQPTR 446
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 447 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 505
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 506 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 565
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ +FYSLVS DT EMFYS+KRQQFLIDQGY+F ++T +P
Sbjct: 566 RR-------NDPDFKVYFYSLVSKDTDEMFYSSKRQQFLIDQGYTFTILTDIPEVHENEH 618
Query: 421 LSYHRLDEQLALLGKVLSA 439
Y +Q LL VL A
Sbjct: 619 CVYKTKGQQRELLAGVLLA 637
>gi|449329742|gb|AGE96011.1| DNA repair helicase rad25 [Encephalitozoon cuniculi]
Length = 696
Score = 521 bits (1342), Expect = e-145, Method: Compositional matrix adjust.
Identities = 255/439 (58%), Positives = 323/439 (73%), Gaps = 9/439 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND V L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 208 LIEEYDFRNDKVLRSLQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 267
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKK+CL L T+AVSV+QW Q ++ + D + RFTSD KE + ++G+V+TT
Sbjct: 268 ITAISTIKKNCLVLCTSAVSVEQWKQQTLQFTNMAPDGVGRFTSDHKEWPKDDSGIVITT 327
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 328 YTMLAYTGKRSHEAQKIMDLIRRTEWGLLVLDEVHVVPAMMFRRVLSLVSHHCKLGLTAT 387
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 388 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIARVSCIEVWCGMTGDFYREYL-SQPTR 446
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 447 RRRLLSIMNPTKFQVCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 505
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 506 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 565
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ +FYSLVS DT EMFYS+KRQQFLIDQGY+F ++T +P
Sbjct: 566 RR-------NDPDFKVYFYSLVSKDTDEMFYSSKRQQFLIDQGYTFTILTDIPEVHENEH 618
Query: 421 LSYHRLDEQLALLGKVLSA 439
Y +Q LL VL A
Sbjct: 619 CVYKTKGQQRELLAGVLLA 637
>gi|303388169|ref|XP_003072319.1| DNA repair helicase Rad25 [Encephalitozoon intestinalis ATCC 50506]
gi|303301458|gb|ADM10959.1| DNA repair helicase Rad25 [Encephalitozoon intestinalis ATCC 50506]
Length = 672
Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust.
Identities = 256/439 (58%), Positives = 320/439 (72%), Gaps = 9/439 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND L ++LKP R YQE L+KMFGNGRARSGIIVLPCG+GK++VG
Sbjct: 184 LIEEYDFRNDKTLRSLQIDLKPTTIIRSYQEICLNKMFGNGRARSGIIVLPCGSGKTIVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A IKKSCL L T+AVSV+QW Q ++ I + + RFTSD KE + + G+VVTT
Sbjct: 244 ITAISTIKKSCLVLCTSAVSVEQWKQQTLQFTNISPENVGRFTSDHKEWPKDDCGIVVTT 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+A+ GKRS E++KI++ IR EWGLL++DEVHVVPA MFR+V+SL HCKLGLTAT
Sbjct: 304 YTMLAYTGKRSYEAQKIMDLIRKTEWGLLVLDEVHVVPAMMFRRVLSLVGHHCKLGLTAT 363
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V C EVWC MT +F+ EYL + ++
Sbjct: 364 LVREDDKIEDLNFLIGPKLYEADWQDLSAKGHIARVSCVEVWCRMTGDFYREYL-SQPTR 422
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CE+LI HE RGDKIIVF+D+++AL YA+KL KP IYG T
Sbjct: 423 RRRLLSIMNPTKFQMCEYLINKHE-SRGDKIIVFSDSVYALKAYALKLGKPFIYGPTGQT 481
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 482 ERMRILKQFQTNPVINTIFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 541
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ ++ +FYSLVS DT EMFYS KRQQFLIDQGY+F ++T +P
Sbjct: 542 RR-------NDPDFKVYFYSLVSKDTDEMFYSNKRQQFLIDQGYTFTILTDIPEAHENEH 594
Query: 421 LSYHRLDEQLALLGKVLSA 439
Y +Q LL VL A
Sbjct: 595 CVYRTKGQQRELLAGVLLA 613
>gi|74690569|sp|Q6E6J3.1|RAD25_ANTLO RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|47156900|gb|AAT12293.1| DNA repair helicase RAD25 [Antonospora locustae]
Length = 687
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 250/439 (56%), Positives = 321/439 (73%), Gaps = 9/439 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
M+EEYDFR+D L+M+L+ R YQE SL+KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 203 MIEEYDFRDDVALRSLDMDLRDTVSIRTYQEVSLNKMFGNRRARSGVIVLPCGAGKTLVG 262
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A C IKK C+ L T+ VSV+QW Q +ST+ D + RFTS+ KE F +AG+++TT
Sbjct: 263 ITAMCTIKKPCIVLCTSGVSVEQWRQQVLAFSTVSADAVSRFTSERKEMFEADAGILITT 322
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+AF G+RS E+++++E +R EWGL+++DEVHVVPA MFRKV+S HCKLGLTAT
Sbjct: 323 YTMLAFSGRRSAEAQRVMEWLRGTEWGLMILDEVHVVPAAMFRKVVSAVSHHCKLGLTAT 382
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEA+W DL G IA V+C EVWC MT EF+ EYL ++ +
Sbjct: 383 LVREDDKIEDLNFLIGPKLYEADWQDLSMQGHIARVECVEVWCDMTAEFYREYL-GQDPR 441
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L +MNP KF+ CEFLIR HE G+KIIVF+DN+ AL YA+KL KP IYG T
Sbjct: 442 RRRVLSIMNPAKFQTCEFLIRKHEAL-GEKIIVFSDNVLALRTYALKLGKPFIYGPTGQT 500
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +IL+ F+ + +NT+FLSKVGD SID+PEA+ +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 501 ERMRILRQFQTNPAINTLFLSKVGDTSIDLPEASCLIQISSHFGSRRQEAQRLGRILRAK 560
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +FY+LVS DT+EM+YS KRQQFL+DQGY+F+ +T+L
Sbjct: 561 RR-------NDPGFRVYFYTLVSKDTEEMYYSRKRQQFLVDQGYTFRTVTALEGFRDTDV 613
Query: 421 LSYHRLDEQLALLGKVLSA 439
+ EQ LL VL A
Sbjct: 614 RVFRGKAEQRELLATVLLA 632
>gi|367055690|ref|XP_003658223.1| hypothetical protein THITE_2156915 [Thielavia terrestris NRRL 8126]
gi|347005489|gb|AEO71887.1| hypothetical protein THITE_2156915 [Thielavia terrestris NRRL 8126]
Length = 828
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/442 (55%), Positives = 323/442 (73%), Gaps = 9/442 (2%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND+VN DL+++L+P Q RP+QE+SL+KMFGNGRA+SGI+VLPCGAGK+LVG+
Sbjct: 298 LEEYDFRNDHVNADLDIDLRPGTQIRPHQEQSLNKMFGNGRAKSGIVVLPCGAGKTLVGI 357
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + LAT +++ QW +F W+ + I F S K F G+ GV++TTY
Sbjct: 358 AAACTIKKGVVVLATGSIAAVQWRDEFLKWTNVDPASIALFVSGEKSPFAGSTGVLITTY 417
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
MV R+ ES ++IE + REWGL+++DEVHV PA FR V+ K+H KLGLTATL
Sbjct: 418 AMVTNTRARAGESARMIELLTTREWGLMVLDEVHVAPAQTFRTVVGCVKAHAKLGLTATL 477
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED+R+ DLNFLIGPKLYEA+WL+L + G IA VQCAEVWCPM EF+ +YL+ ++
Sbjct: 478 LREDDRVDDLNFLIGPKLYEASWLELSQQGHIARVQCAEVWCPMPSEFYEQYLRA-GARS 536
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ MNP KF+AC++LIR+HE RGDKIIVF+DN++AL YA KL KP +YG TS+ E
Sbjct: 537 RPLFCAMNPTKFQACQYLIRYHE-SRGDKIIVFSDNVYALEVYAKKLMKPFLYGGTSNAE 595
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R ++L F+ S D +T+FLSK+GD S+D+PEA V+IQIS+ GSRRQEAQRLGR+LRAK
Sbjct: 596 RQEVLDYFRNSPDCSTLFLSKIGDTSLDLPEATVLIQISAQYGSRRQEAQRLGRVLRAKR 655
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E E +NAFFYSLVS DT EM YS KRQ FL+DQGY+F+VIT L + L
Sbjct: 656 RNE-------EGFNAFFYSLVSKDTVEMVYSAKRQVFLVDQGYAFRVITQLKNIEDMPGL 708
Query: 422 SYHRLDEQLALLGKVLSAGDDA 443
+Y + LL +VL+ + +
Sbjct: 709 AYATPQARRELLRQVLAEAESS 730
>gi|340379126|ref|XP_003388078.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Amphimedon queenslandica]
Length = 794
Score = 517 bits (1331), Expect = e-144, Method: Compositional matrix adjust.
Identities = 262/502 (52%), Positives = 344/502 (68%), Gaps = 14/502 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND VNPD+N++LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 295 LLAEYDFRNDTVNPDINIDLKPTTILRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 354
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K C+ L T+AV+V+QW QFKLWS I +CRFTSD+K++ N + ++T
Sbjct: 355 VTAACTVRKRCMVLCTSAVAVEQWWSQFKLWSNIDMSVVCRFTSDAKDKPSPNTSIAIST 414
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV++ KR+ +S+++++ ++NREWGL+++DEV +PA FR+V+S ++HCKLGLTAT
Sbjct: 415 YSMVSYTQKRAWDSQQVMDFLQNREWGLMILDEVQTIPADKFRRVLSAVQAHCKLGLTAT 474
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L GFIA VQCAEVWCPMT EF++EYL+ + ++
Sbjct: 475 LVREDDKIQDLNFLIGPKLYEANWMELQNLGFIARVQCAEVWCPMTPEFYAEYLRIK-TR 533
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K++ LYVMNPNKFR C+FL+R+HE+ R DKI++F+D +F L YAMKL +P I G T
Sbjct: 534 KRKLLYVMNPNKFRICQFLMRYHER-RNDKIMIFSDMVFPLRTYAMKLDRPFIDGQTPQK 592
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KIL+ F+ + +NTIF+SKVGDNS D+P+ANV+IQ+S+H GSRRQEAQRLGRILRAK
Sbjct: 593 ERMKILKNFRHNPQVNTIFISKVGDNSFDLPDANVLIQVSAHGGSRRQEAQRLGRILRAK 652
Query: 361 -GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG-----YSFKVITSLPP 414
G + A + + + + K G K T L P
Sbjct: 653 KGTIYVLAASDSDADEEVLPTSGGGQGKGHGFERKAGSMATMSGGNDMIIDLKPTTILRP 712
Query: 415 PDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKA-RRIAGSMSAMSG 473
G L D+ L + KVL+A D E L R AGSM+ MSG
Sbjct: 713 YQEGRCLVMEEQDQDL--MKKVLAASDSDADEEVLPTSGGGQGKGHGFERKAGSMATMSG 770
Query: 474 AQGMVYMEY--RYDPWQKQLFK 493
M+YMEY R P Q LF+
Sbjct: 771 GNDMMYMEYSARARP-QHPLFR 791
>gi|349605790|gb|AEQ00905.1| TFIIH basal transcription factor complex helicase XPB subunit-like
protein, partial [Equus caballus]
Length = 372
Score = 514 bits (1324), Expect = e-143, Method: Compositional matrix adjust.
Identities = 238/359 (66%), Positives = 299/359 (83%), Gaps = 4/359 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAG SLVG
Sbjct: 18 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAG-SLVG 76
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 77 VTAACTVRKRCLVLGNSAVSVEQWKTQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 135
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 136 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 195
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +K
Sbjct: 196 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TK 254
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 255 KRILLYTMNPNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 313
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRA
Sbjct: 314 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRA 372
>gi|344235728|gb|EGV91831.1| TFIIH basal transcription factor complex helicase XPB subunit
[Cricetulus griseus]
Length = 1183
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 257/441 (58%), Positives = 319/441 (72%), Gaps = 50/441 (11%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND++NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 766 LLAEYDFRNDSLNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 825
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G + ++T
Sbjct: 826 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSIAIST 884
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTAT
Sbjct: 885 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTAT 944
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED++I DLNFLIGPKLYEANW++L G+IA VQCAE
Sbjct: 945 LVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAE-------------------- 984
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
FHE +R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 985 ---------------------FHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 1022
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH SRRQEAQRLG RAK
Sbjct: 1023 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGCSRRQEAQRLGGEHRAK 1082
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +
Sbjct: 1083 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EE 1135
Query: 421 LSYHRLDEQLALLGKVLSAGD 441
L++ +EQ LL KVL+A D
Sbjct: 1136 LAFSTKEEQQQLLQKVLAATD 1156
>gi|429964053|gb|ELA46051.1| DNA repair helicase rad25 [Vavraia culicis 'floridensis']
Length = 667
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 258/481 (53%), Positives = 339/481 (70%), Gaps = 22/481 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND +++MELK + R YQE SL+KMFGNGR RSGIIVLPCG+GK+LVG
Sbjct: 194 LIEEYDFRNDKKLKEIDMELKNNIVIRTYQEISLNKMFGNGRGRSGIIVLPCGSGKTLVG 253
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A C IKK L L T+AVSV+QW Q K ++ ++DD I FTS+ K+ V+V+T
Sbjct: 254 ITAICTIKKPTLVLCTSAVSVEQWKAQIKQFTNVKDDDIACFTSERKDVC---DSVIVST 310
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+ F GKRS E++K ++ I+N EWGLL++DEVHVVPA MFRKV+ L HCKLGLTAT
Sbjct: 311 YTMLCFSGKRSYEAQKAMDHIKNTEWGLLILDEVHVVPAQMFRKVLGLVSHHCKLGLTAT 370
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEA+W L G IA V C EVWC MT F+S YL ++N++
Sbjct: 371 LLREDDKIEDLNFLIGPKLYEADWQYLSMQGHIATVSCFEVWCSMTNHFYSAYL-RQNTR 429
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K++ + +MNP KF+ ++LI HE +RGDKIIVF+DN+ AL YA+KL KP IYG T
Sbjct: 430 KRRVIAIMNPIKFQTTQYLINMHE-KRGDKIIVFSDNVHALKSYALKLGKPYIYGPTGQQ 488
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KIL+ F+ + +NT+FLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 489 ERMKILKQFQTNPMINTLFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 548
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +FYSLVS DT EM+YSTKRQQ+LIDQGY+FKV + D+ +
Sbjct: 549 RR-------NDPGFKVYFYSLVSKDTDEMYYSTKRQQYLIDQGYTFKVFDDM-KMDNFDN 600
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ +EQ LL +L A + E ED ++ +++ S+ ++S +G+ Y+
Sbjct: 601 RVFKTKEEQKELLASILLASEK----ELESEDVEETVVNQK-----SLKSVSNVEGVAYV 651
Query: 481 E 481
E
Sbjct: 652 E 652
>gi|440492855|gb|ELQ75388.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH [Trachipleistophora hominis]
Length = 666
Score = 506 bits (1303), Expect = e-140, Method: Compositional matrix adjust.
Identities = 256/481 (53%), Positives = 339/481 (70%), Gaps = 22/481 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFRND ++NMELK + R YQE SL+KMFGNGR RSGIIVLPCG+GK+LVG
Sbjct: 193 LIEEYDFRNDKKLKEINMELKNNIVIRTYQEISLNKMFGNGRGRSGIIVLPCGSGKTLVG 252
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A C IK+ L L T+AVSV+QW Q K +++++D+ I FTS+ K+ V+++T
Sbjct: 253 ITAICTIKRPTLVLCTSAVSVEQWKAQIKQFTSVKDEDIACFTSERKDVC---DAVIIST 309
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y M+ F GKRS E++K I+ I+N EWGLL++DEVHVVPA MFRKV+ L HCKLGLTAT
Sbjct: 310 YTMLCFSGKRSYEAQKAIDYIKNTEWGLLILDEVHVVPAQMFRKVLGLVSHHCKLGLTAT 369
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEA+W L G IA V C EVWC MT F++ YL ++N +
Sbjct: 370 LLREDDKIEDLNFLIGPKLYEADWQYLSMQGHIATVSCFEVWCSMTNHFYAAYL-RQNMR 428
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K++ + +MNP KF+ ++LI HE +RGDKIIVF+DN+ AL YA+KL KP IYG T
Sbjct: 429 KRRVIAIMNPTKFQTTQYLINMHE-KRGDKIIVFSDNVHALKSYALKLGKPYIYGPTGQQ 487
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER KIL+ F+ + +NT+FLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 488 ERMKILKQFQTNPMINTLFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 547
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ + +FYSLVS DT EM+YSTKRQQ+LIDQGY+FKV + D+ +
Sbjct: 548 RR-------NDPGFKVYFYSLVSKDTDEMYYSTKRQQYLIDQGYTFKVFDDM-KMDNFDN 599
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480
+ +EQ LL +L A ++ E EDA++ + + S+ ++S + + Y+
Sbjct: 600 RVFKTKEEQKELLASILLASEN----ELESEDAEETVVSQK-----SLRSVSNVENVAYV 650
Query: 481 E 481
E
Sbjct: 651 E 651
>gi|240277609|gb|EER41117.1| DNA repair helicase RAD25 [Ajellomyces capsulatus H143]
Length = 1379
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 256/492 (52%), Positives = 335/492 (68%), Gaps = 57/492 (11%)
Query: 2 LEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
LEEYDFRND +NP L+++LKP+AQ R YQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG+
Sbjct: 269 LEEYDFRNDEINPTLDIDLKPNAQIRSYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVGI 328
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
+AAC IKK + L T+++SV QW +F WS I I FTSD+KE+FR N G++V+TY
Sbjct: 329 TAACTIKKGTIILCTSSMSVVQWRNEFLRWSNIDPSDIAVFTSDNKEKFRRNTGIIVSTY 388
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+MV+ RS ++EK+++ +++REWGL+++DEVHVVPA MFRKV S + KLGLTATL
Sbjct: 389 SMVSQTRARSHDAEKMMDWMQSREWGLMILDEVHVVPASMFRKVTSAIATQTKLGLTATL 448
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I DLNFLIGPKLYEANW++L + G IA VQCAEVWCPMT EF++EY+ +E S+K
Sbjct: 449 LREDDKIKDLNFLIGPKLYEANWMELAEQGHIAKVQCAEVWCPMTTEFYTEYM-REKSRK 507
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
LY+MNP RK IYG T E
Sbjct: 508 AALLYIMNP--------------------------------------RKAYIYGGTPQNE 529
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R +IL+ F+ + +NTIFLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 530 RLRILENFQHNEQVNTIFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKR 589
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
+ E +NAFFYSLVS DT EMFYS+KRQ FL+DQGY+FKVIT L ++ L
Sbjct: 590 R-------NDEGFNAFFYSLVSKDTDEMFYSSKRQAFLVDQGYAFKVITHLEGIENLEGL 642
Query: 422 SYHRLDEQLALLGKVLSAGDDAVGLEQLDED--ADDIALHKAR---------RIAGSMSA 470
+Y E+ LL +V+ + + +E++ +D ++ KAR R A ++S
Sbjct: 643 AYATPTERRELLQEVMLQNETSAAVEEVVDDLFSERSGGPKARGAAKKVAVKRSAATLSG 702
Query: 471 MSGAQGMVYMEY 482
++G + M Y+EY
Sbjct: 703 LAGGEDMAYIEY 714
>gi|426337101|ref|XP_004032562.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit [Gorilla gorilla gorilla]
Length = 741
Score = 501 bits (1290), Expect = e-139, Method: Compositional matrix adjust.
Identities = 268/488 (54%), Positives = 334/488 (68%), Gaps = 64/488 (13%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND+VNPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 291 LLAEYDFRNDSVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 350
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L +AVSV+QW QFK+WSTI D QICRFTSD+K++ G V ++T
Sbjct: 351 VTAACTVRKRCLVLGNSAVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIG-CSVAIST 409
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+++E ++ +EWGL+++DEVH +PA R G TA
Sbjct: 410 YSMLGHTTKRSWEAERVMEWLKTQEWGLMILDEVHTIPAPGPRF----------QGTTAQ 459
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
+ +WL +VWCPM+ EF+ EY+ + +K
Sbjct: 460 I--------------------WDWLS-----------DEQVWCPMSPEFYREYVAIK-TK 487
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS
Sbjct: 488 KRILLYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQG 546
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK
Sbjct: 547 ERMQILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAK 606
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + D
Sbjct: 607 KGMV------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-ED 659
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA------LHKARRIAGSMSAMSGA 474
L++ +EQ LL KVL+A D LD + + +A +A R G+MS+MSGA
Sbjct: 660 LAFSTKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGA 712
Query: 475 QGMVYMEY 482
VYMEY
Sbjct: 713 DDTVYMEY 720
>gi|328770595|gb|EGF80636.1| hypothetical protein BATDEDRAFT_33160 [Batrachochytrium
dendrobatidis JAM81]
Length = 769
Score = 499 bits (1285), Expect = e-138, Method: Compositional matrix adjust.
Identities = 254/486 (52%), Positives = 349/486 (71%), Gaps = 29/486 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSG----IIVLPCGAGK 56
++EEYDFR D++N DL+++L P R YQEK LSKMFG G + IIVLP GAGK
Sbjct: 267 LMEEYDFRKDDINEDLDIDLSPKTTIRDYQEKCLSKMFGGGASGGRARSGIIVLPTGAGK 326
Query: 57 SLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGV 116
+LVG++AAC +KKS L L TNA+SV+QWA +F+ WST+QD QI +FT+DSK+RF GN+GV
Sbjct: 327 TLVGITAACTVKKSTLVLCTNALSVEQWANEFRKWSTLQDHQIAKFTADSKQRFAGNSGV 386
Query: 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176
VV+TY M++ GKR+ +++K+IE + EWGL+++DEVHVVPA++FR+V++ +H KLG
Sbjct: 387 VVSTYTMISHTGKRAYDTQKMIEFVNGHEWGLMILDEVHVVPANIFRRVLTTVAAHTKLG 446
Query: 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK 236
LTATLVRED++I DLNFLIGPKLYEANW+DL G IA V+ E+WCPMT +F+ +Y+
Sbjct: 447 LTATLVREDDKIEDLNFLIGPKLYEANWMDLATRGHIAKVEAVEIWCPMTGDFYQQYI-- 504
Query: 237 ENSK--KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIY 294
NSK K++ L VMNP KF A ++LI++ E+Q GDKIIVF+DN+FAL YA L+KP IY
Sbjct: 505 -NSKPGKRRLLCVMNPAKFMAAQYLIKWREKQ-GDKIIVFSDNVFALEYYAKALKKPYIY 562
Query: 295 GATSHVERTKILQAFKCSRDL-NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRL 353
G TSH ER++IL F+ + + TIFLSKVGD S+D+PEA +IQISS GSRRQEAQR+
Sbjct: 563 GGTSHEERSRILNYFRNNHPMFRTIFLSKVGDTSLDLPEATCLIQISSQFGSRRQEAQRM 622
Query: 354 GRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT--- 410
GRILRAK + E E + + FY+LVS DT E+ +S +R+ FL+DQGY F V+
Sbjct: 623 GRILRAKRRNE-------EGFKSRFYTLVSKDTDEVVFSARRRTFLVDQGYEFHVVPNYL 675
Query: 411 SLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSA 470
S+ P + +L + +Q+ LL +++ + VG+ D++ + +A +AG +
Sbjct: 676 SMIPEEDRGELLMSQYSDQVKLL-QLVKQQTEEVGM-------DEVVVAEADDLAGVWMS 727
Query: 471 MSGAQG 476
SG+ G
Sbjct: 728 QSGSMG 733
>gi|169806188|ref|XP_001827839.1| DNA repair helicase [Enterocytozoon bieneusi H348]
gi|263505381|sp|A9CRJ7.1|RAD25_ENTBH RecName: Full=Probable DNA repair helicase RAD25 homolog; AltName:
Full=General transcription and DNA repair factor IIH
subunit RAD25; Short=TFIIH subunit RAD25
gi|161779287|gb|EDQ31310.1| DNA repair helicase [Enterocytozoon bieneusi H348]
Length = 609
Score = 496 bits (1277), Expect = e-137, Method: Compositional matrix adjust.
Identities = 251/448 (56%), Positives = 318/448 (70%), Gaps = 19/448 (4%)
Query: 1 MLEEYDF---RNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKS 57
+++EYD+ + N+ +L+++LKP R YQE SL+KM GNGRARSGIIVLPCG+GK+
Sbjct: 161 LIDEYDYTAYESVNMIKNLHIDLKPSCHIRSYQEISLNKMLGNGRARSGIIVLPCGSGKT 220
Query: 58 LVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG----- 112
LVG++A IKKS + L T+AVSV+QW L++TI + RFTSD KE F
Sbjct: 221 LVGITAISTIKKSAIILCTSAVSVEQWKQSILLFTTINPYSVSRFTSDCKEWFENYNVEN 280
Query: 113 --NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170
G+++TTY+M++F GKRS + ++II +I WG++++DEVHVVPA MFRKV+S
Sbjct: 281 TSQGGILITTYSMLSFSGKRSYDVQRIINKIFAYNWGIMILDEVHVVPAQMFRKVVSSVL 340
Query: 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230
CKLGLTATLVRED++I DLNFLIGPKLYEANW DL G IA V+C+EVWC MT EF+
Sbjct: 341 HQCKLGLTATLVREDDKIEDLNFLIGPKLYEANWQDLSDKGHIAKVECSEVWCEMTAEFY 400
Query: 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK 290
EYL ++ SKK+ L +MNP K + CE+LI+ HE Q GDKIIVF+D++FAL EYA+K++K
Sbjct: 401 REYLIQDTSKKR-LLSIMNPVKIQMCEYLIQKHEAQ-GDKIIVFSDSVFALKEYAIKMKK 458
Query: 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEA 350
P IYG TS ER KIL+ F+ + +NT+FLSKVGD SID+PEA +IQISSH GSRRQEA
Sbjct: 459 PFIYGPTSQTERMKILKQFQINSKINTLFLSKVGDTSIDLPEATCLIQISSHFGSRRQEA 518
Query: 351 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
QRLGR+LRAK + + A+FYSLVS DT+EM YS KRQQFLIDQGYSFK I
Sbjct: 519 QRLGRVLRAKKR-------NNPNFKAYFYSLVSKDTEEMHYSAKRQQFLIDQGYSFKTII 571
Query: 411 SLPPPDSGADLSYHRLDEQLALLGKVLS 438
Y EQ LL +LS
Sbjct: 572 GFNDMYYNETRLYKTKQEQKELLFNLLS 599
>gi|66359840|ref|XP_627098.1| RAD25, helicase involved in DNA repair [Cryptosporidium parvum Iowa
II]
gi|46228526|gb|EAK89396.1| RAD25, helicase involved in DNA repair [Cryptosporidium parvum Iowa
II]
Length = 835
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 251/470 (53%), Positives = 332/470 (70%), Gaps = 16/470 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR+D NP+L++ LK Q R YQE++L MF NGRARSGIIVLPCGAGK+L G
Sbjct: 289 LLSEYDFRSDIKNPNLDISLKHTTQIRYYQEQALRMMFSNGRARSGIIVLPCGAGKTLTG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
++AAC ++KS L L T+AV+V QW FQF+ ++T+ +++ TS +KE A V+V
Sbjct: 349 ITAACTMRKSVLILTTSAVAVSQWKFQFEQYTTVDPNKVHCLTSSNKEPLGPTSEAVVLV 408
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TTY M+AF GKRS S +II +I+ REWGLL+ DEV PA FR++ + K+HCKLGLT
Sbjct: 409 TTYTMMAFTGKRSASSSQIISQIQEREWGLLIFDEVQFAPAPAFRRINGIVKAHCKLGLT 468
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANW++L G++A C+EVWCPMT ++ EYL +
Sbjct: 469 ATLVREDDLIQDLQWLIGPKLYEANWMELQDRGYLAKALCSEVWCPMTASYYREYLDCSH 528
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+KK++ L+V NPNK R CEFLI +HE QRGDKI+VF+D+LFAL A+ L+KP + G+
Sbjct: 529 AKKRK-LWVCNPNKLRVCEFLIHWHE-QRGDKILVFSDSLFALINIAVALKKPFVCGSVD 586
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER KILQ FK + + NTIFLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 587 TLERIKILQQFKENPNFNTIFLSKVGDNAIDIPLANVVIQISFNFASRRQEAQRLGRILR 646
Query: 359 AK-----------GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
K K D ++ YNAFFYSL+S DT+EM Y+ KRQQF+IDQGYS++
Sbjct: 647 PKPYSGMKSGKVINKTSDSPNISEQPYNAFFYSLLSKDTEEMEYADKRQQFIIDQGYSYR 706
Query: 408 VITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA 457
VIT P + +L Y ++ Q +L +++ DD + ++ + D+I
Sbjct: 707 VITMDSFPLNNENLHYSDIETQEKML-ELIKQSDDTLDDDEFGNNIDEIG 755
>gi|67588048|ref|XP_665323.1| hypothetical protein [Cryptosporidium hominis TU502]
gi|54655954|gb|EAL35093.1| hypothetical protein Chro.80227, partial [Cryptosporidium hominis]
Length = 751
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 253/465 (54%), Positives = 330/465 (70%), Gaps = 21/465 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR+D NP+L++ LK Q R YQE++L MF NGRARSGIIVLPCGAGK+L G
Sbjct: 289 LLSEYDFRSDIKNPNLDISLKHTTQIRYYQEQALRMMFSNGRARSGIIVLPCGAGKTLTG 348
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
++AAC ++KS L L T+AV+V QW FQF+ ++T+ +++ TS +KE A V+V
Sbjct: 349 ITAACTMRKSILILTTSAVAVSQWKFQFEQYTTVDPNKVHCLTSSNKEPLGPTSEAVVLV 408
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TTY M+AF GKRS S +II +I+ REWGLL+ DEV PA FR++ + K+HCKLGLT
Sbjct: 409 TTYTMMAFTGKRSTSSSQIISQIQEREWGLLIFDEVQFAPAPAFRRINGIVKAHCKLGLT 468
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANW++L G++A C+EVWCPMT ++ EYL +
Sbjct: 469 ATLVREDDLIQDLQWLIGPKLYEANWMELQDRGYLAKALCSEVWCPMTASYYREYLDCSH 528
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+KK++ L+V NPNK R CEFLIR+HE QRGDKI+VF+D+LFAL A+ L+KP + G+
Sbjct: 529 AKKRK-LWVCNPNKLRVCEFLIRWHE-QRGDKILVFSDSLFALINIAVALKKPFVCGSVD 586
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER KILQ FK + + NTIFLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 587 TLERIKILQQFKENPNFNTIFLSKVGDNAIDIPLANVVIQISFNFASRRQEAQRLGRILR 646
Query: 359 AK-----------GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
K K D ++ YNAFFYSL+S DT+EM Y+ KRQQF+IDQGYS++
Sbjct: 647 PKPYSGMKSGKVINKTSDSPNISEQPYNAFFYSLLSKDTEEMEYADKRQQFIIDQGYSYR 706
Query: 408 VITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDED 452
VIT P + +L Y ++ Q +L +++ DD LD+D
Sbjct: 707 VITMDSFPLNNENLHYSDIETQEKML-ELIKQSDDT-----LDDD 745
>gi|209876984|ref|XP_002139934.1| DNA repair helicase rad25 family protein [Cryptosporidium muris
RN66]
gi|209555540|gb|EEA05585.1| DNA repair helicase rad25 family protein [Cryptosporidium muris
RN66]
Length = 815
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 244/450 (54%), Positives = 318/450 (70%), Gaps = 16/450 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR+D+ NP L++ LK Q R YQE +L MF NGRARSGIIVLPCGAGK+L G
Sbjct: 264 LLSEYDFRSDHRNPSLDITLKHTTQIRYYQEYALRMMFSNGRARSGIIVLPCGAGKTLTG 323
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
++AAC ++KS L L T+AV+V QW QF+ ++ + ++ TS +K+ A +++
Sbjct: 324 ITAACTMRKSILILTTSAVAVTQWRQQFEDYTNVDSRRLHCLTSGTKDSLGPASEAEILI 383
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TTY M+AF GKRS S II +I+ REWGLL+ DEV PA FR++ S+ K+HCKLGLT
Sbjct: 384 TTYTMMAFTGKRSASSAHIINQIQEREWGLLIFDEVQFAPAPAFRRINSIVKAHCKLGLT 443
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANW++L G++A C+EVWCPMT EFF EYL +
Sbjct: 444 ATLVREDDLIQDLQWLIGPKLYEANWMELQDRGYLARALCSEVWCPMTSEFFKEYLNCSH 503
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+K+++ L+V NPNK + CEFLIR+HE QRGDKI+VF+D+LFAL A+ L++P + G+
Sbjct: 504 AKRRK-LWVCNPNKLKVCEFLIRWHE-QRGDKILVFSDSLFALISVAVALKRPFVCGSVD 561
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER KILQ FK + + NTIFLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 562 ILERIKILQQFKQNPNFNTIFLSKVGDNAIDIPLANVVIQISFNFASRRQEAQRLGRILR 621
Query: 359 AK-----------GKLEDRMAGGKE-EYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSF 406
K +E+ E YNAFFYSL+S DT+EM Y+ KRQQF+IDQGYS+
Sbjct: 622 PKPYSNWQKKSLSASIENTEDPVNETSYNAFFYSLLSKDTEEMQYADKRQQFIIDQGYSY 681
Query: 407 KVITSLPPPDSGADLSYHRLDEQLALLGKV 436
+V+ P +L + L Q+ LL K+
Sbjct: 682 RVLPINSFPLDNENLHFSELSAQIDLLNKI 711
>gi|403365939|gb|EJY82760.1| hypothetical protein OXYTRI_19624 [Oxytricha trifallax]
Length = 808
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 253/456 (55%), Positives = 311/456 (68%), Gaps = 30/456 (6%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDF+ D PDL +ELK Q R YQE+SLSKMF NGRARSG+IVLPCGAGK+L G
Sbjct: 321 LIEEYDFKRDQTIPDLKIELKSTTQIRSYQEQSLSKMFSNGRARSGVIVLPCGAGKTLAG 380
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF------RGNA 114
+ AAC +KKS + L T+ VSV QW QF WS I ++CRFTS +K+ A
Sbjct: 381 IIAACTVKKSTMILCTSDVSVQQWRQQFYQWSNIAG-KVCRFTSRTKDPMFESKGPDSEA 439
Query: 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174
G+V+++YNM+A+ G RS +++KI++ IRN +WGLL++DEV VVPA MFRKV+++ KSHCK
Sbjct: 440 GIVISSYNMIAYLGSRSGQTQKIMDTIRNTDWGLLILDEVQVVPAEMFRKVLAICKSHCK 499
Query: 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL 234
LGLTATLVRED +I DLNFLIGPKLYEANWLDL + GF+A VQC EVWC MT EF+ EYL
Sbjct: 500 LGLTATLVREDNKIQDLNFLIGPKLYEANWLDLQEQGFLARVQCIEVWCEMTTEFYREYL 559
Query: 235 KKE-NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMI 293
+ KQ LYV NPNKF AC++LI HE RGDKIIVF+DNLFAL YA KL+KP I
Sbjct: 560 NHNLKPRMKQVLYVNNPNKFLACQYLINLHE-SRGDKIIVFSDNLFALKMYAKKLKKPYI 618
Query: 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRL 353
G S ER IL F+ + ++NTIFLSKVGD SID+P ANVI S L
Sbjct: 619 SGDVSQSERMGILHYFQKTNEINTIFLSKVGDTSIDLPGANVI-------NSNIFPFSLL 671
Query: 354 GRILRAKGKLEDRMAGGKEE---------YNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
++R LE+ K E +NA+FYSLVST+TQEM+Y+ KRQQFLIDQGY
Sbjct: 672 --VVRKPSALEEFSDLNKAEKASLLQLRRFNAYFYSLVSTNTQEMYYADKRQQFLIDQGY 729
Query: 405 SFKVITSLP---PPDSGADLSYHRLDEQLALLGKVL 437
F+VI LP P L + EQ+ L +L
Sbjct: 730 YFEVIQELPFQKDPLQLQKLQMTTIREQVDFLTSIL 765
>gi|116191997|ref|XP_001221811.1| hypothetical protein CHGG_05716 [Chaetomium globosum CBS 148.51]
gi|88181629|gb|EAQ89097.1| hypothetical protein CHGG_05716 [Chaetomium globosum CBS 148.51]
Length = 808
Score = 485 bits (1248), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/492 (50%), Positives = 329/492 (66%), Gaps = 69/492 (14%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFRND+VNP+L ++L+P+ Q RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 335 ILEEYDFRNDDVNPNLEIDLRPNTQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 394
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC IKK + L T+++SV QW +F WS I D + FT++SK++F G+ G++VTT
Sbjct: 395 ITAACTIKKGVIVLCTSSMSVVQWRQEFLKWSNINPDDVAIFTAESKQKFSGSTGIIVTT 454
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MV +RS +S+K+++ +R REWGL+L+DEVHVVPA MFR+
Sbjct: 455 YSMVTNSRERSHDSKKMMDFLRGREWGLMLLDEVHVVPAEMFRR---------------- 498
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
G IA VQCAEVWCPM EF+ EYL+ N++
Sbjct: 499 ------------------------------GHIAKVQCAEVWCPMPTEFYDEYLRA-NAR 527
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
K+ LY MNP KF+AC++LI +HE RGDKIIVF+D L++L +YA+KL+K IYG TS
Sbjct: 528 MKRTLYAMNPRKFQACQYLINYHEA-RGDKIIVFSDELYSLKQYALKLKKVFIYGGTSQN 586
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER ++L+ F+ + ++NT+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK
Sbjct: 587 ERMQVLENFQHNPEVNTLFLSKIGDTSLDLPEATCLIQISSHFGSRRQEAQRLGRILRAK 646
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ E +NAFFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L + D
Sbjct: 647 RR-------NDEGFNAFFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEKTPD 699
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDI-----------ALHKARRIAGSMS 469
L++ E LL + L D+ G E D + DD+ A + RR AG +S
Sbjct: 700 LAFATPLESRELLQRTLV--DNERGGED-DVETDDLFGKPGRGGGRKAGNGVRRTAGMLS 756
Query: 470 AMSGAQGMVYME 481
++G Q M Y+E
Sbjct: 757 ELAGGQDMAYIE 768
>gi|402466417|gb|EJW01911.1| DNA repair helicase rad25, partial [Edhazardia aedis USNM 41457]
Length = 670
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 233/395 (58%), Positives = 299/395 (75%), Gaps = 13/395 (3%)
Query: 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77
++LKP+ Q R YQE L+KMF NGRARSGIIVLPCG+GK+LVG++A C +K L L T+
Sbjct: 279 IDLKPNTQIRSYQEICLNKMFSNGRARSGIIVLPCGSGKTLVGITAVCTMKHPTLILCTS 338
Query: 78 AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI 137
+VSV+QW Q K ++ I DD+IC FTSD K+ + V++TTY M+A+ GKRS E+++I
Sbjct: 339 SVSVEQWKAQIKHYTNISDDEICIFTSDKKDNI---SNVLITTYTMLAYSGKRSREAQRI 395
Query: 138 IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGP 197
I+ I N+ WGLL++DEVHVVPA+MFRKV+S+ + + KLGLTATLVRED++I DLNFLIGP
Sbjct: 396 IDMINNKVWGLLILDEVHVVPANMFRKVVSI-RHYTKLGLTATLVREDDKIEDLNFLIGP 454
Query: 198 KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257
KLYEA+W L G IA V+C E+WC MT +F+ +YL ++ +K++ L VMNP KF C+
Sbjct: 455 KLYEADWQSLSAQGHIAKVECIEIWCRMTADFYQQYLI-QSVRKRRVLSVMNPGKFMICD 513
Query: 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNT 317
+LIR HE++ GDKIIVF+DN++AL YA+KL KP IYG T ER +IL+ F+ + +N
Sbjct: 514 YLIRKHEKE-GDKIIVFSDNVYALKSYALKLNKPFIYGPTGQFERMRILKQFQSNPKVNC 572
Query: 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377
IFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK + + F
Sbjct: 573 IFLSKVGDTSIDLPEATCLIQISSHFGSRRQEAQRLGRILRAKRR-------NDPGFKVF 625
Query: 378 FYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
FY+LVS DT EMFYS KRQQFL+DQGYSF V+ L
Sbjct: 626 FYTLVSKDTDEMFYSAKRQQFLVDQGYSFTVMQDL 660
>gi|162605680|ref|XP_001713355.1| DNA repair helicase [Guillardia theta]
gi|13794287|gb|AAK39664.1|AF083031_21 DNA repair helicase [Guillardia theta]
Length = 617
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 232/438 (52%), Positives = 319/438 (72%), Gaps = 14/438 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF ND+ P++ +ELK + R YQEK+LSKMF GRARSG+IVLPCG+GK++VG
Sbjct: 189 LLEEYDFSNDSFVPNIKIELKSNVIVRKYQEKALSKMFNKGRARSGVIVLPCGSGKTIVG 248
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG-NAGVVVT 119
+SA IKK+ L + ++VSVDQW Q+ W++I +I F S A +VVT
Sbjct: 249 ISATSIIKKTTLVVCNSSVSVDQWRRQYIKWTSISSTRIKNFVSGEFAFLDSIVAEIVVT 308
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+M++FGG+R++ S ++ EI+ REWG++++DEVHVVPA++FRKV+ L K++CKLGLTA
Sbjct: 309 TYSMISFGGQRAKLSASLLREIKEREWGMVILDEVHVVPANIFRKVLGLLKTNCKLGLTA 368
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED ++ D+ FLIGPKL+EANWLDL K GF+A +CAE++C M EF+ YL + NS
Sbjct: 369 TLLREDRKVGDIGFLIGPKLFEANWLDLEKSGFLAYAKCAEIYCKMPSEFYMNYLIQNNS 428
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+Q L +NPNK + C+ LI++HE RGD+I+VF+DN+FAL YA K+++ IYGAT
Sbjct: 429 -TRQLLCALNPNKAKICDLLIKYHE-NRGDRILVFSDNVFALRSYATKIKRAFIYGATGS 486
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER KIL+ F+ + T+F+S++GD SID+PEANVI+QISSH GSRRQEAQRLGRILR
Sbjct: 487 YERMKILKNFQ-DHEGETLFISRIGDTSIDLPEANVILQISSHYGSRRQEAQRLGRILRP 545
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K K + NAFFYSL+S+ T+E++YS+KRQQFLI QGY FK IT+ +
Sbjct: 546 KTKSK----------NAFFYSLISSSTEEIYYSSKRQQFLISQGYDFKTITNFESFNISK 595
Query: 420 DLSYHRLDEQLALLGKVL 437
L+ H ++ +L ++L
Sbjct: 596 KLNQHESLKKTEILSQIL 613
>gi|160331520|ref|XP_001712467.1| rad25 [Hemiselmis andersenii]
gi|159765915|gb|ABW98142.1| rad25 [Hemiselmis andersenii]
Length = 638
Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/439 (52%), Positives = 313/439 (71%), Gaps = 14/439 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF ND P + ++L P R YQEK++SKMF GRARSG+IVLPCGAGK++VG
Sbjct: 205 LLEEYDFLNDFFIPSIKIDLNPTTTIRRYQEKAISKMFNRGRARSGVIVLPCGAGKTIVG 264
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-RGNAGVVVT 119
+++ IKK+ L + + VSV+QW QF WS I +I F + G + ++VT
Sbjct: 265 ITSVTMIKKTALIVCNSTVSVEQWRRQFIKWSNINPKKIKSFIAGQYSNLENGTSDIIVT 324
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+M++FGG+R++ S ++ EI++REWG++++DEVH+VPA++FRKV+ + ++HCKLGLTA
Sbjct: 325 TYSMISFGGQRAKLSASLLNEIKSREWGIVILDEVHIVPANVFRKVLGIIRTHCKLGLTA 384
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED ++ D+ FLIGPKLYEANWLDL + GF+A CAE+ C M +FF YL + NS
Sbjct: 385 TLLREDRKVGDIGFLIGPKLYEANWLDLEQIGFLAMACCAEICCSMPPDFFEHYLCESNS 444
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+Q L +NPNK R C+FLIR+HE RGD+I+VF+DN+FAL YA K+ K IYGAT
Sbjct: 445 -TRQILCALNPNKARICDFLIRYHE-SRGDRILVFSDNVFALRSYATKMLKAFIYGATGS 502
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
+ER +IL+ F+ + T+F+S++GD SID+PEANVI+QISSH GSRRQEAQRLGRILR
Sbjct: 503 LERIRILKNFQ-KHEGQTLFISRIGDTSIDLPEANVILQISSHYGSRRQEAQRLGRILRP 561
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K K AFFYSLV+++T+EMFY+ KRQQFL+ QGY FK I + +
Sbjct: 562 KSK----------SRKAFFYSLVTSNTEEMFYANKRQQFLVGQGYDFKTILNFSGINKIP 611
Query: 420 DLSYHRLDEQLALLGKVLS 438
+L + E+ LL +VLS
Sbjct: 612 NLIFETEKEKKLLLKQVLS 630
>gi|401408975|ref|XP_003883936.1| hypothetical protein NCLIV_036860 [Neospora caninum Liverpool]
gi|325118353|emb|CBZ53904.1| hypothetical protein NCLIV_036860 [Neospora caninum Liverpool]
Length = 968
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 239/442 (54%), Positives = 314/442 (71%), Gaps = 9/442 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPH-AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 59
+L EYDFR D N +L+ L + R YQE++L KMF NGRARSGIIVLPCGAGK+L
Sbjct: 430 LLNEYDFRRDKTNKNLSSLLLKSSTKIRYYQERALRKMFSNGRARSGIIVLPCGAGKTLT 489
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVV 117
G++AAC ++KS + L T+AV+VDQW QF+ ++TI ++ T+++K+ AGV+
Sbjct: 490 GITAACTLRKSVMVLTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPVDEAGVL 549
Query: 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177
V+TY M+AF G+RS +E+I+++IR REWGLL+ DEV PA FR++ L KSHC+LGL
Sbjct: 550 VSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDEVQFAPAPAFRRINDLVKSHCRLGL 609
Query: 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237
TATLVRED+ I DL +LIGPKL+EANW++L GF+A V C EVWCPMT +F+ EYL+
Sbjct: 610 TATLVREDDLIKDLQWLIGPKLFEANWIELQDQGFLARVSCQEVWCPMTADFYREYLRCS 669
Query: 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGAT 297
++K+++ L+V NP K CE+L+R+HE RGDK++VF+DN+FAL A L +P IYG
Sbjct: 670 HAKQRK-LWVCNPTKLMTCEWLLRYHE-ARGDKVLVFSDNVFALLHTAKALNRPFIYGQV 727
Query: 298 SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357
S VER IL FK N++FLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRIL
Sbjct: 728 SAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCANVVIQISFNFASRRQEAQRLGRIL 787
Query: 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
RAK + D E +NAFFYSL+S DT EM Y+ KRQQF+IDQGY++KVI S P
Sbjct: 788 RAKPQAGDE----GENFNAFFYSLISKDTLEMVYADKRQQFIIDQGYAYKVIHSRDLPLE 843
Query: 418 GADLSYHRLDEQLALLGKVLSA 439
L Y Q +L +L++
Sbjct: 844 PEKLIYGDAQRQREILTDILAS 865
>gi|221508622|gb|EEE34191.1| helicase, putative [Toxoplasma gondii VEG]
Length = 997
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/442 (54%), Positives = 314/442 (71%), Gaps = 9/442 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPH-AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 59
+L EYDFR D N +L+ L + R YQE++L KMF NGRARSGIIVLPCGAGK+L
Sbjct: 446 LLNEYDFRRDKTNKNLSSLLLKSSTKIRYYQERALRKMFSNGRARSGIIVLPCGAGKTLT 505
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVV 117
G++AAC ++KS + L T+AV+VDQW QF+ ++TI ++ T+++K+ AGV+
Sbjct: 506 GITAACTLRKSVMILTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPVDEAGVL 565
Query: 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177
V+TY M+AF G+RS +E+I+++IR REWGLL+ DEV PA FR++ L KSHC+LGL
Sbjct: 566 VSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDEVQFAPAPAFRRINDLVKSHCRLGL 625
Query: 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237
TATLVRED+ I DL +LIGPKL+EANW++L GF+A V C EVWCPMT +F+ EYL+
Sbjct: 626 TATLVREDDLIKDLQWLIGPKLFEANWIELQDQGFLARVSCQEVWCPMTADFYREYLRCS 685
Query: 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGAT 297
++K+++ L+V NP K CE+L+R+HE RGDKI+VF+DN+FAL A L +P IYG
Sbjct: 686 HAKQRK-LWVCNPTKLMTCEWLLRYHE-ARGDKILVFSDNVFALLHTAKALNRPFIYGQV 743
Query: 298 SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357
S VER IL FK N++FLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRIL
Sbjct: 744 SAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCANVVIQISFNFASRRQEAQRLGRIL 803
Query: 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
RAK + D E +NAFFYSL+S DT EM Y+ KRQQF+IDQGY++KVI S P
Sbjct: 804 RAKPQAGDE----GENFNAFFYSLISKDTLEMVYADKRQQFIIDQGYAYKVIHSRDLPMQ 859
Query: 418 GADLSYHRLDEQLALLGKVLSA 439
L Y Q +L +L++
Sbjct: 860 PDKLIYGDPQRQREILTDILAS 881
>gi|237832699|ref|XP_002365647.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
gi|211963311|gb|EEA98506.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
Length = 997
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/442 (54%), Positives = 314/442 (71%), Gaps = 9/442 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPH-AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 59
+L EYDFR D N +L+ L + R YQE++L KMF NGRARSGIIVLPCGAGK+L
Sbjct: 446 LLNEYDFRRDKTNKNLSSLLLKSSTKIRYYQERALRKMFSNGRARSGIIVLPCGAGKTLT 505
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVV 117
G++AAC ++KS + L T+AV+VDQW QF+ ++TI ++ T+++K+ AGV+
Sbjct: 506 GITAACTLRKSVMILTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPVDEAGVL 565
Query: 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177
V+TY M+AF G+RS +E+I+++IR REWGLL+ DEV PA FR++ L KSHC+LGL
Sbjct: 566 VSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDEVQFAPAPAFRRINDLVKSHCRLGL 625
Query: 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237
TATLVRED+ I DL +LIGPKL+EANW++L GF+A V C EVWCPMT +F+ EYL+
Sbjct: 626 TATLVREDDLIKDLQWLIGPKLFEANWIELQDQGFLARVSCQEVWCPMTADFYREYLRCS 685
Query: 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGAT 297
++K+++ L+V NP K CE+L+R+HE RGDKI+VF+DN+FAL A L +P IYG
Sbjct: 686 HAKQRK-LWVCNPTKLMTCEWLLRYHE-ARGDKILVFSDNVFALLHTAKALNRPFIYGQV 743
Query: 298 SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357
S VER IL FK N++FLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRIL
Sbjct: 744 SAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCANVVIQISFNFASRRQEAQRLGRIL 803
Query: 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
RAK + D E +NAFFYSL+S DT EM Y+ KRQQF+IDQGY++KVI S P
Sbjct: 804 RAKPQAGDE----GENFNAFFYSLISKDTLEMVYADKRQQFIIDQGYAYKVIHSRDLPMQ 859
Query: 418 GADLSYHRLDEQLALLGKVLSA 439
L Y Q +L +L++
Sbjct: 860 PDKLIYGDPQRQREILTDILAS 881
>gi|221488103|gb|EEE26317.1| helicase, putative [Toxoplasma gondii GT1]
Length = 997
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 240/442 (54%), Positives = 314/442 (71%), Gaps = 9/442 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPH-AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV 59
+L EYDFR D N +L+ L + R YQE++L KMF NGRARSGIIVLPCGAGK+L
Sbjct: 446 LLNEYDFRRDKTNKNLSSLLLKSSTKIRYYQERALRKMFSNGRARSGIIVLPCGAGKTLT 505
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVV 117
G++AAC ++KS + L T+AV+VDQW QF+ ++TI ++ T+++K+ AGV+
Sbjct: 506 GITAACTLRKSVMILTTSAVAVDQWRKQFEEYTTIDSSRLLTLTAETKQTLWPVDEAGVL 565
Query: 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177
V+TY M+AF G+RS +E+I+++IR REWGLL+ DEV PA FR++ L KSHC+LGL
Sbjct: 566 VSTYTMLAFSGRRSLAAERIMQQIREREWGLLIFDEVQFAPAPAFRRINDLVKSHCRLGL 625
Query: 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237
TATLVRED+ I DL +LIGPKL+EANW++L GF+A V C EVWCPMT +F+ EYL+
Sbjct: 626 TATLVREDDLIKDLQWLIGPKLFEANWIELQDQGFLARVSCQEVWCPMTADFYREYLRCS 685
Query: 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGAT 297
++K+++ L+V NP K CE+L+R+HE RGDKI+VF+DN+FAL A L +P IYG
Sbjct: 686 HAKQRK-LWVCNPTKLMTCEWLLRYHE-ARGDKILVFSDNVFALLHTAKALNRPFIYGQV 743
Query: 298 SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357
S VER IL FK N++FLSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRIL
Sbjct: 744 SAVERVAILNKFKHESTFNSLFLSKVGDNAIDIPCANVVIQISFNFASRRQEAQRLGRIL 803
Query: 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
RAK + D E +NAFFYSL+S DT EM Y+ KRQQF+IDQGY++KVI S P
Sbjct: 804 RAKPQAGDE----GENFNAFFYSLISKDTLEMVYADKRQQFIIDQGYAYKVIHSRDLPMQ 859
Query: 418 GADLSYHRLDEQLALLGKVLSA 439
L Y Q +L +L++
Sbjct: 860 PDKLIYGDPQRQREILTDILAS 881
>gi|71030142|ref|XP_764713.1| DNA helicase [Theileria parva strain Muguga]
gi|68351669|gb|EAN32430.1| DNA helicase, putative [Theileria parva]
Length = 770
Score = 472 bits (1215), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/520 (46%), Positives = 340/520 (65%), Gaps = 19/520 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++ EYDFR DN +P LN ++ + + R YQE++L +MF NGRARSGIIVLPCGAGK+L G
Sbjct: 259 LVMEYDFRKDNNSPSLNCCIRSNIKIRYYQERALRRMFSNGRARSGIIVLPCGAGKTLTG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
+ AAC ++KS L T+AV+V+QW QF+ ++ I + TS+ K AGV++
Sbjct: 319 IVAACTVRKSIFVLTTSAVAVEQWIKQFQDFTNISRTNLISLTSEHKTDLWDEKEAGVLI 378
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ K E +E+I+ +I+ REWG+L+ DEV VPA FR++ + +SHCKLGLT
Sbjct: 379 STYTMMSYTRKHRENTERILSQIKQREWGMLIFDEVQFVPAPAFRRINEIIRSHCKLGLT 438
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANWL+L + G++A V C E+WCPMT F+ EYL + +
Sbjct: 439 ATLVREDDLIRDLQWLIGPKLYEANWLELQEKGYLAKVICKEIWCPMTAPFYREYL-RSS 497
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S KK+ L+ NP K CE+L++FHE RGDK+IVF+DNLFAL A L +P IYG S
Sbjct: 498 SVKKRRLWSCNPVKLITCEYLLKFHE-SRGDKVIVFSDNLFALLHAAKLLNRPFIYGKVS 556
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER IL FK NTIFLSKVGDN++DIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 557 SAERIIILNKFKNETTFNTIFLSKVGDNALDIPCANVVIQISFNFASRRQEAQRLGRILR 616
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ +NAFFYSLVS DTQEM ++ KRQQF+IDQGY++ V +S
Sbjct: 617 PKSKTDE------HGFNAFFYSLVSKDTQEMVFADKRQQFIIDQGYAYNVTSSSTIVKDT 670
Query: 419 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLD-------EDADDIALHKARRIAGSMSAM 471
++L Y + Q LL ++++ +D E+++ + + + +++ G S
Sbjct: 671 SNLMYSKPSIQQELLQDIITSAEDVDDEEEVNPTDLFTPTNESSLQMSVSQKKTGLASLS 730
Query: 472 SGAQGMVYMEYRYDPWQK--QLFKASSQIFFSFQLLYAVQ 509
+ + ++ P +K + KASS+ F+ LY+ +
Sbjct: 731 GSLKNQLQYKHLLPPSEKPAKKSKASSEQHPFFKKLYSTK 770
>gi|429327267|gb|AFZ79027.1| rad25/xp-B DNA repair helicase, putative [Babesia equi]
Length = 779
Score = 470 bits (1209), Expect = e-129, Method: Compositional matrix adjust.
Identities = 237/485 (48%), Positives = 326/485 (67%), Gaps = 19/485 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++ EYDFR DN P LN ++ + + R YQE++L +MF NGRARSGIIVLPCGAGK+L G
Sbjct: 265 LVMEYDFRKDNNTPSLNCCIRSNIKIRYYQERALRRMFSNGRARSGIIVLPCGAGKTLTG 324
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG--NAGVVV 118
+ AAC ++KS L T+AV+V+QW QF ++ I + TS++K +GV+V
Sbjct: 325 IVAACTVRKSIFVLTTSAVAVEQWIKQFLDFTNISATHLLSLTSENKADLWNIDESGVLV 384
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ K E +E+I+ +I+ REWGLL+ DEV VPA FR++ + +SHCKLGLT
Sbjct: 385 STYTMMSYTRKHRENTERILNQIKEREWGLLIFDEVQFVPAPAFRRINEIIRSHCKLGLT 444
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANWL+L + GF+A V C E+WCPMT F+ EYL+ ++
Sbjct: 445 ATLVREDDLIKDLQWLIGPKLYEANWLELQEKGFLAKVICQEIWCPMTAAFYREYLRSDS 504
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+KK++ L+ NP K CE+L+++HE +GDK+IVF+DNLFAL A L +P IYG S
Sbjct: 505 AKKRR-LWSCNPIKLLTCEYLLKYHE-AKGDKVIVFSDNLFALLHVARTLNRPFIYGKVS 562
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER IL FK N+IFLSKVGDN++DIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 563 SAERIIILNKFKNETTFNSIFLSKVGDNALDIPCANVVIQISFNFASRRQEAQRLGRILR 622
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ +NAFFYSLVS DTQEM ++ KRQQF+IDQGY++ V +S
Sbjct: 623 PKSKTDE------HGFNAFFYSLVSKDTQEMIFADKRQQFIIDQGYAYNVSSSTNVVKDT 676
Query: 419 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDE---------DADDIALHKARRIAGSMS 469
+L Y Q LL +++++ DD E++++ D D A + ++S
Sbjct: 677 RNLVYANPKMQQDLLQEIIASSDDVDNDEEINQSDPIITTQDDDDKKAAQLVLQKRTALS 736
Query: 470 AMSGA 474
++SG+
Sbjct: 737 SLSGS 741
>gi|399216282|emb|CCF72970.1| unnamed protein product [Babesia microti strain RI]
Length = 750
Score = 469 bits (1208), Expect = e-129, Method: Compositional matrix adjust.
Identities = 238/438 (54%), Positives = 306/438 (69%), Gaps = 10/438 (2%)
Query: 4 EYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63
EYDFR D N L+ +K + + R YQE++L +MF NGRARSGIIVLPCGAGK+L G+ A
Sbjct: 256 EYDFRKDRKNASLDCIVKSNTKIRYYQERALCRMFSNGRARSGIIVLPCGAGKTLTGIIA 315
Query: 64 ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG--NAGVVVTTY 121
AC I KS L L T+AV+V+QW QF ++ I +++ TSD K ++GV+++TY
Sbjct: 316 ACTISKSVLVLTTSAVAVEQWIKQFLDYTNISTNKLLALTSDCKSDIWPIESSGVLISTY 375
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
M+ + K SE +E+I+ +IR R+WGLL+ DEV PA FR++ +SHCKLGLTATL
Sbjct: 376 TMMTYSRKHSEMTERIMRQIRERDWGLLVFDEVQFAPAPAFRRINDNVRSHCKLGLTATL 435
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRED+ I DL ++IGPKLYEANWL+L + G++A V C EVWCPMT F+ EYLK +++K+
Sbjct: 436 VREDDLIRDLQWIIGPKLYEANWLELQEQGYLAKVLCQEVWCPMTAPFYKEYLKSQHAKQ 495
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
++ L+ NP K CE+LIR+HE RGDK+IVF+D +FAL A +P IYG S E
Sbjct: 496 RK-LWSCNPVKLAVCEYLIRYHE-ARGDKLIVFSDVVFALLHMARSCARPFIYGKVSATE 553
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R IL FK S D NTIFLSKVGDN++DIP ANV+IQIS + SRRQEAQRLGRILR K
Sbjct: 554 RIAILTKFKNSNDFNTIFLSKVGDNALDIPCANVVIQISFNFASRRQEAQRLGRILRPKP 613
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADL 421
K + R +NAFFYSLVS DTQEM YS KRQQF+IDQGYS+ VI+ P DL
Sbjct: 614 KADSR------GFNAFFYSLVSKDTQEMVYSDKRQQFIIDQGYSYNVISCNEFPIETMDL 667
Query: 422 SYHRLDEQLALLGKVLSA 439
Y+ + + LL +LS+
Sbjct: 668 IYNNANVREELLLHILSS 685
>gi|84995690|ref|XP_952567.1| DNA repair helicase [Theileria annulata strain Ankara]
gi|65302728|emb|CAI74835.1| DNA repair helicase, putative [Theileria annulata]
Length = 770
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/452 (51%), Positives = 312/452 (69%), Gaps = 10/452 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++ EYDFR DN +P LN ++ + + R YQE++L +MF NGRARSGIIVLPCGAGK+L G
Sbjct: 259 LVMEYDFRKDNNSPSLNCCIRSNIKIRYYQERALRRMFSNGRARSGIIVLPCGAGKTLTG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
+ AAC ++KS L T+AV+V+QW QF ++ I + TS+ K +AGV++
Sbjct: 319 IVAACTVRKSIFVLTTSAVAVEQWIKQFLDFTNISRTNLISLTSEHKTDLWDEKDAGVLI 378
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ K E +E+I+ +I+ REWG+L+ DEV VPA FR++ + +SHCKLGLT
Sbjct: 379 STYTMMSYTRKHRENTERILNQIKQREWGMLIFDEVQFVPAPAFRRINEIIRSHCKLGLT 438
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANWL+L + G++A V C E+WCPMT F+ EYL + +
Sbjct: 439 ATLVREDDLIRDLQWLIGPKLYEANWLELQQKGYLAKVICKEIWCPMTAPFYREYL-RSS 497
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S KK+ L+ NP K CE+L+RFHE RGDK+IVF+DNLFAL A L +P IYG S
Sbjct: 498 SVKKRRLWSCNPVKLITCEYLLRFHE-SRGDKVIVFSDNLFALLHAAKLLNRPFIYGKVS 556
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER IL FK NTIFLSKVGDN++DIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 557 SAERIVILNKFKNETTFNTIFLSKVGDNALDIPCANVVIQISFNFASRRQEAQRLGRILR 616
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ +NAFFYSLVS DTQEM ++ KRQQF+IDQGY++ V +
Sbjct: 617 PKSKTDE------HGFNAFFYSLVSKDTQEMVFADKRQQFIIDQGYAYNVTSFSTIVKDT 670
Query: 419 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLD 450
++L Y + Q LL ++++ +D E+++
Sbjct: 671 SNLLYSKPSIQQELLQDIITSAEDVDDEEEVN 702
>gi|82539946|ref|XP_724324.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23478932|gb|EAA15889.1| RepB-related [Plasmodium yoelii yoelii]
Length = 870
Score = 463 bits (1191), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/441 (54%), Positives = 300/441 (68%), Gaps = 6/441 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+LN LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 348 LLMEYDFRRDKKNPNLNCSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 407
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 408 ITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPINEAGVLI 467
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+A+ GKRSE+S KI+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 468 STYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 527
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL ++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 528 ATLVREDLLIRDLQWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPSSFYKYYL-KSN 586
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 587 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 645
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK +NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 646 PIERIAIINKFKNDSTINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 705
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 706 PKNKANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 763
Query: 419 ADLSYHRLDEQLALLGKVLSA 439
+L Y Q LL +L++
Sbjct: 764 LNLVYKNKKIQDNLLKCILAS 784
>gi|68070877|ref|XP_677352.1| helicase [Plasmodium berghei strain ANKA]
gi|56497437|emb|CAI00041.1| helicase, putative [Plasmodium berghei]
Length = 876
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/441 (54%), Positives = 300/441 (68%), Gaps = 6/441 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+LN LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 354 LLMEYDFRRDKKNPNLNCSLKNHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 413
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 414 ITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPINEAGVLI 473
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+A+ GKRSE+S KI+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 474 STYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 533
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL ++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 534 ATLVREDLLIRDLQWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPSSFYKYYL-KSN 592
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 593 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 651
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK +NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 652 PIERIAIINKFKNDSTINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 711
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 712 PKNKANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 769
Query: 419 ADLSYHRLDEQLALLGKVLSA 439
+L Y Q LL +L++
Sbjct: 770 LNLVYKNKKIQDNLLKCILAS 790
>gi|70953432|ref|XP_745818.1| helicase [Plasmodium chabaudi chabaudi]
gi|56526257|emb|CAH77830.1| helicase, putative [Plasmodium chabaudi chabaudi]
Length = 872
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/441 (53%), Positives = 300/441 (68%), Gaps = 6/441 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+LN LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 350 LLMEYDFRRDKKNPNLNCSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 409
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 410 ITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPINEAGVLI 469
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+A+ GKRSE+S KI+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 470 STYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 529
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL ++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 530 ATLVREDLLIRDLQWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPSSFYKYYL-KSN 588
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 589 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 647
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK +NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 648 PIERIAIINKFKNDSTINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 707
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K + ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 708 PKNRANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 765
Query: 419 ADLSYHRLDEQLALLGKVLSA 439
+L Y Q LL +L++
Sbjct: 766 LNLVYKNKKIQDNLLKCILAS 786
>gi|326436958|gb|EGD82528.1| hypothetical protein PTSG_03178 [Salpingoeca sp. ATCC 50818]
Length = 804
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 248/505 (49%), Positives = 329/505 (65%), Gaps = 25/505 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYD+ +D P L+++LKP + RPYQEKSL KMF +GRARSGIIVLPCGAGK+L G
Sbjct: 308 LLLEYDYTHDPSIPRLDIDLKPTCRLRPYQEKSLRKMFNHGRARSGIIVLPCGAGKTLTG 367
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A IK+ + L T+ V+V+QW +F W + + +FTS K N ++ T
Sbjct: 368 VTAVSTIKRRAIVLCTSNVAVEQWRREFVRWCDVDHRVVRKFTSADKHMPPDNC-ILCAT 426
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A RS E++++IE I R WG++++DEV VPA FR++++ +HCKLGLTAT
Sbjct: 427 YSMLAAKQNRSVEAKQMIEWITGRSWGIMILDEVQTVPAKTFRELLTRIPAHCKLGLTAT 486
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED +I DL F++GPKLYEANW+DL + G+IA V+C EVWCPM + F+ +Y + ++
Sbjct: 487 LVREDGKINDLRFMVGPKLYEANWIDLQEAGYIARVKCFEVWCPMVQSFYEQYWRTDSHA 546
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K L V NPNKF ACEFLIR HE RGDKIIVF+D++FAL E A KL K I G T
Sbjct: 547 QKMKLCVCNPNKFSACEFLIRKHE-ARGDKIIVFSDDIFALHELATKLNKEYISGDTPDR 605
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
+R +IL +K D TIF SK+ DN+ D+PEANV+IQ+SS G+RRQEAQRLGRILRAK
Sbjct: 606 QRHEILDRYKKRDDFRTIFFSKIADNAFDLPEANVLIQVSSQGGARRQEAQRLGRILRAK 665
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGAD 420
+ R E NAFFYSLVS DT+EM Y+T RQ+FL+DQGY+F+V+T L + A
Sbjct: 666 SNTKTRPG----EPNAFFYSLVSRDTKEMAYATARQRFLVDQGYAFQVLTRLVGFEEEAK 721
Query: 421 LSYHRLD---EQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAG-------SMSA 470
++ D EQ LL K+ + ++E + K + AG SM A
Sbjct: 722 VTPFVFDSPAEQKQLLIKIAESSS------MIEEARNAANAAKKAKRAGKSVVQRASMDA 775
Query: 471 MSGAQGMVYMEYRY---DPWQKQLF 492
+GA MVY E R P +K LF
Sbjct: 776 FAGAGDMVYEERRVRKKKPLRKLLF 800
>gi|403221729|dbj|BAM39861.1| DNA repair helicase [Theileria orientalis strain Shintoku]
Length = 771
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/440 (52%), Positives = 302/440 (68%), Gaps = 10/440 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++ EYDFR DN + LN ++ + + R YQE++L +MF NGRARSGIIVLPCGAGK+L G
Sbjct: 259 LVMEYDFRKDNNSASLNCCIRSNIKIRYYQERALRRMFSNGRARSGIIVLPCGAGKTLTG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
+ AAC ++KS L T+AV+V+QW QF ++ I + T++ K AGV++
Sbjct: 319 IVAACTVRKSIFVLTTSAVAVEQWIKQFLDFTNISRSNLLSLTAEHKRDLWDEKEAGVLI 378
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ K E +E+I+ +I+ REWGLL+ DEV VPA FR++ +SHCKLGLT
Sbjct: 379 STYTMMSYSRKHREHTERILNQIKQREWGLLIFDEVQFVPAPAFRRINETIRSHCKLGLT 438
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANWL+L + GF+A V C E+WCPMT F+ EYL+
Sbjct: 439 ATLVREDDLIRDLQWLIGPKLYEANWLELQEKGFLAKVICKEIWCPMTAPFYREYLRSTT 498
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
KK++ L+ NP K CE+L++FHE RGDK+IVF+DNLFAL A L +P IYG S
Sbjct: 499 VKKRR-LWSCNPVKLITCEYLLKFHE-SRGDKVIVFSDNLFALLHAAKLLNRPFIYGKVS 556
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER IL FK NTIFLSKVGDN++DIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 557 SAERIIILNKFKNENTFNTIFLSKVGDNALDIPCANVVIQISFNFASRRQEAQRLGRILR 616
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ +NAFFYSLVS DTQEM ++ KRQQF+IDQGY++ V +S
Sbjct: 617 PKSKADE------HGFNAFFYSLVSKDTQEMVFADKRQQFIIDQGYAYNVTSSSDIVKDT 670
Query: 419 ADLSYHRLDEQLALLGKVLS 438
++L Y R Q LL +++
Sbjct: 671 SNLIYTRAHIQQELLQDIIT 690
>gi|156089441|ref|XP_001612127.1| DNA repair helicase rad25 family protein [Babesia bovis]
gi|154799381|gb|EDO08559.1| DNA repair helicase rad25 family protein [Babesia bovis]
Length = 770
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/457 (50%), Positives = 311/457 (68%), Gaps = 16/457 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++ EYDFR D P L+ ++ + + R YQE++L +MF NGRARSGIIVLPCGAGK+L G
Sbjct: 259 LVMEYDFRKDKKTPTLDCCIRTNIKIRYYQERALRRMFSNGRARSGIIVLPCGAGKTLTG 318
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVVV 118
+ AAC ++K L T+AV+V+QW QF+ ++ I +++ TSD K AGVV+
Sbjct: 319 IVAACTVRKPIFVLTTSAVAVEQWVKQFQEFTNISAERVVTLTSDHKSDLWDEKGAGVVI 378
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+AF K E +E I+ +I+ R+WGLL+ DEV VPA FR++ + +SHCKLGLT
Sbjct: 379 STYTMMAFTRKHKESTENILNQIKQRDWGLLIFDEVQFVPAPAFRRINDIVRSHCKLGLT 438
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED+ I DL +LIGPKLYEANWL+L + GF+A V C E+WCPMT F+ EYL+ +
Sbjct: 439 ATLVREDDLIKDLQWLIGPKLYEANWLELQEKGFLAKVICKEIWCPMTAPFYREYLRSDC 498
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+KK++ L+ NP K CE+L++FHE RGDK+IVF+DNLFAL A KL +P I G S
Sbjct: 499 AKKRR-LWSCNPVKLATCEYLLKFHE-ARGDKVIVFSDNLFALHNVAKKLCRPFICGKVS 556
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER IL FK N+I LSKVGDN++DIP ANV+IQIS + SRRQEAQRLGRILR
Sbjct: 557 SAERIIILNKFKNENTFNSIILSKVGDNALDIPCANVVIQISFNFASRRQEAQRLGRILR 616
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ +NAFFYSLVS DTQEM ++ KRQQF+IDQGY++ V +S
Sbjct: 617 PKSKTDE------NGFNAFFYSLVSKDTQEMVFADKRQQFIIDQGYAYNVTSSSEIVKDE 670
Query: 419 ADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADD 455
++L Y + + + LL ++ V +DE+ D+
Sbjct: 671 SNLIYAKPEVREELLREI------NVQTTDVDEEEDE 701
>gi|221054291|ref|XP_002261893.1| helicase [Plasmodium knowlesi strain H]
gi|193808353|emb|CAQ39057.1| helicase, putative [Plasmodium knowlesi strain H]
Length = 888
Score = 459 bits (1182), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/441 (53%), Positives = 300/441 (68%), Gaps = 6/441 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+L LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 365 LLMEYDFRRDKKNPNLICSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 424
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 425 ITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPINEAGVLI 484
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+A+ GKRSE+S KI+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 485 STYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 544
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL ++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 545 ATLVREDLLIRDLQWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPSSFYKYYL-KSN 603
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 604 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 662
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK ++NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 663 PIERIAIINKFKNDSNINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 722
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 723 PKNKANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 780
Query: 419 ADLSYHRLDEQLALLGKVLSA 439
+L Y Q LL +L++
Sbjct: 781 LNLVYKNKKIQENLLKCILAS 801
>gi|389582844|dbj|GAB65581.1| DNA repair helicase [Plasmodium cynomolgi strain B]
Length = 792
Score = 459 bits (1180), Expect = e-126, Method: Compositional matrix adjust.
Identities = 232/412 (56%), Positives = 289/412 (70%), Gaps = 6/412 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+L LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 360 LLMEYDFRRDKKNPNLICSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 419
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 420 ITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPINEAGVLI 479
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+A+ GKRSE+S KI+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 480 STYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 539
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL ++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 540 ATLVREDLLIRDLQWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPSSFYKYYL-KSN 598
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 599 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 657
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK ++NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 658 PIERIAIINKFKNDSNINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 717
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++
Sbjct: 718 PKNKANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLS 767
>gi|156081817|ref|XP_001608401.1| DNA repair helicase [Plasmodium vivax Sal-1]
gi|148800972|gb|EDL42377.1| DNA repair helicase, putative [Plasmodium vivax]
Length = 900
Score = 458 bits (1178), Expect = e-126, Method: Compositional matrix adjust.
Identities = 238/441 (53%), Positives = 299/441 (67%), Gaps = 6/441 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+L LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 377 LLMEYDFRRDKKNPNLICSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 436
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 437 ITAASTIKKSSLFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKFDLWPINEAGVLI 496
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+A+ GKRSE+S KI+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 497 STYTMLAYSGKRSEQSLKIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 556
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL ++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 557 ATLVREDLLIRDLQWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPSSFYKYYL-KSN 615
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 616 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 674
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK +NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 675 PIERIAIINKFKNDSTINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 734
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 735 PKNKANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 792
Query: 419 ADLSYHRLDEQLALLGKVLSA 439
+L Y Q LL +L++
Sbjct: 793 LNLVYKNKKIQENLLKCILAS 813
>gi|124802985|ref|XP_001347653.1| DNA repair helicase rad25, putative [Plasmodium falciparum 3D7]
gi|23495236|gb|AAN35566.1| DNA repair helicase rad25, putative [Plasmodium falciparum 3D7]
Length = 886
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 236/441 (53%), Positives = 300/441 (68%), Gaps = 6/441 (1%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFR D NP+L LK H Q R YQEK+L KMF NGR+RSGIIVLPCG GK+L G
Sbjct: 362 LLMEYDFRRDKKNPNLICSLKSHVQIRYYQEKALRKMFSNGRSRSGIIVLPCGVGKTLTG 421
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGVVV 118
++AA IKKS L L T+AV+V+QW QF+ ++ I I TSD K AGV++
Sbjct: 422 ITAASTIKKSALFLTTSAVAVEQWKKQFEDFTNIHPRHIRILTSDYKLDLWPINEAGVLI 481
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+++ GKRSE+S +I+ +IR REWGLL+ DEV PA FR++ + KSHCKLGLT
Sbjct: 482 STYTMLSYSGKRSEQSLRIVNDIRRREWGLLVFDEVQFAPAPSFRRINDIVKSHCKLGLT 541
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED I DL+++IGPKLYEANW++L GF+A C E+WC M F+ YL K N
Sbjct: 542 ATLVREDLLIRDLHWIIGPKLYEANWVELQNKGFLAKALCKEIWCSMPCSFYKYYL-KSN 600
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
S K+ LY NP K CE+LI++HEQ DKIIVF+DN+FAL A L KP IYG S
Sbjct: 601 SFIKRRLYTCNPRKLMMCEYLIKYHEQN-NDKIIVFSDNIFALLHIAKTLNKPFIYGKLS 659
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+ER I+ FK +NTI LSKVGDN+IDIP ANV+IQIS + SRRQEAQRLGRI+R
Sbjct: 660 PIERIAIINKFKHDSSINTILLSKVGDNAIDIPIANVVIQISFNFASRRQEAQRLGRIIR 719
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K K ++ + ++FFYSLVS DT EM YS KRQ+FLI+QGY++ V++ +
Sbjct: 720 PKNKANEK--KNINDPDSFFYSLVSKDTIEMCYSDKRQRFLINQGYAYNVLSDNIVDFNK 777
Query: 419 ADLSYHRLDEQLALLGKVLSA 439
+L Y Q LL +L++
Sbjct: 778 LNLVYKNKKIQENLLKCILAS 798
>gi|330040674|ref|XP_003239990.1| DNA repair helicase [Cryptomonas paramecium]
gi|327206916|gb|AEA39092.1| DNA repair helicase [Cryptomonas paramecium]
Length = 624
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/440 (52%), Positives = 316/440 (71%), Gaps = 14/440 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYD+ +D ++ ++ P A R YQEKSLSK+F GRARSG+IVLPCGAGK+++G
Sbjct: 188 LVEEYDYIHDTHVLNIKIDFSPTAYIRNYQEKSLSKIFNKGRARSGVIVLPCGAGKTIIG 247
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG-VVVT 119
+ A C IKK L + + VSV+QW QF WS ++D +I +F + S E + G +V+T
Sbjct: 248 IIAVCIIKKISLVVCNSTVSVEQWKRQFLKWSNLKDKKIKKFITGSFEMKKNITGEIVIT 307
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+M++FGG+R+ S ++ EI+ EWG+ L+DEVHVVPA++FRKV+ + K+H KLGLTA
Sbjct: 308 TYSMISFGGQRARLSASLLREIKKDEWGVTLLDEVHVVPANVFRKVLGIIKTHSKLGLTA 367
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED ++ D+NFLIGPKLYE NWLDL K G++A CAE+ C M +++S YL E+
Sbjct: 368 TLLREDRKVGDINFLIGPKLYETNWLDLEKFGYLATACCAEICCNMPSDYYSCYL-SESI 426
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+Q L +NPNK C+FLI++HE +RGD ++VF+DN+FAL YA KL+K IYGAT
Sbjct: 427 STRQVLCALNPNKAEICDFLIKYHE-KRGDHVLVFSDNVFALRSYATKLKKSFIYGATGS 485
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
+ER ++L+ F+ SR T+F+S++GD SID+PEANVIIQISSH GSRRQEAQRLGRILR
Sbjct: 486 LERMRLLKNFQ-SRKGQTLFISRIGDTSIDLPEANVIIQISSHYGSRRQEAQRLGRILRP 544
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
K K + +AFFYSLVS+ T+EMFYSTKRQQFL+ QGY FK +T +
Sbjct: 545 KIKSK----------HAFFYSLVSSGTEEMFYSTKRQQFLVSQGYDFKTLTKFTGINKVN 594
Query: 420 DLSYHRLDEQLALLGKVLSA 439
L ++ +E+ LL ++LS
Sbjct: 595 KLVFNLEEEKKTLLTQILST 614
>gi|399949903|gb|AFP65559.1| DNA repair helicase [Chroomonas mesostigmatica CCMP1168]
Length = 637
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/410 (53%), Positives = 295/410 (71%), Gaps = 14/410 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF ND P++ ++L P + R YQEK++ KMF GRARSG+IVLPCGAGK++VG
Sbjct: 200 LLEEYDFINDFYVPNIKLDLNPISTIRKYQEKAIFKMFNRGRARSGVIVLPCGAGKTIVG 259
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG-NAGVVVT 119
++A +KK+ L + + VSV+QW QF WS I +I F S ++ +A +++T
Sbjct: 260 ITAVTIVKKTALIVCNSTVSVEQWKKQFIKWSNISPKKIKGFVSGQYQKISDLSADIIIT 319
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+M++F G+R++ S ++ EI++REWG++++DEVH+VPA +FRKV+ + KSHCKLGLTA
Sbjct: 320 TYSMISFSGQRAKLSASLLNEIKSREWGIVILDEVHIVPATIFRKVLGIIKSHCKLGLTA 379
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED ++ D+ FLIGPKL+E NWLDL GF+A +CAE+ C M FF YL K
Sbjct: 380 TLLREDRKVGDIGFLIGPKLFETNWLDLEHIGFLATARCAEICCQMPSIFFKHYLSKCGQ 439
Query: 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
+K L +NP K R C+FLIR+HE RGD+I+VF+DN+FAL YA K++K IYG T
Sbjct: 440 IRKN-LCALNPTKARICDFLIRYHE-SRGDRILVFSDNVFALRSYATKMKKAFIYGTTGS 497
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ER KIL+ F+ + T+F+S++GD SID+PEANVI+QISSH GSRRQEAQRLGRILR
Sbjct: 498 NERIKILKNFQ-EQQGKTLFISRIGDTSIDLPEANVILQISSHYGSRRQEAQRLGRILRP 556
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
K E AFFYSL+S++T+E+FY+ KRQQFLI QGY FK I
Sbjct: 557 K----------IESKKAFFYSLISSNTEEIFYAKKRQQFLISQGYDFKTI 596
>gi|167523483|ref|XP_001746078.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775349|gb|EDQ88973.1| predicted protein [Monosiga brevicollis MX1]
Length = 835
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/495 (49%), Positives = 313/495 (63%), Gaps = 23/495 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLV 59
++ EYDFR D DL ++LKP RPYQEKSLSKMFG G+ARSGIIVLPCGAGK+L
Sbjct: 331 LIGEYDFRRDQKLRDLKIDLKPTCILRPYQEKSLSKMFGRTGQARSGIIVLPCGAGKTLT 390
Query: 60 GVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119
GV+A IKK + L T+ V+V+QW +F+ W + I +FT D KE ++
Sbjct: 391 GVTAVSTIKKRAIVLCTSTVAVEQWCSEFRRWCNVDPSIIRKFTRDDKE-LPPEDCIICC 449
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+M+A RSEE+ ++I +R REWG++++DEV VPA FR +++ SHCKLGLTA
Sbjct: 450 TYSMLAPKKNRSEEAARVINFLRKREWGIMVLDEVQTVPAAKFRALLTEIPSHCKLGLTA 509
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TLVRED +I DL FL+GPKLYEANW+DL G IA VQC EVWC MT+ F+ EYL+ +N
Sbjct: 510 TLVREDGKIDDLRFLVGPKLYEANWMDLQAAGHIARVQCIEVWCRMTEGFYEEYLRGKNR 569
Query: 240 -KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
K+ L V NP KF CE+LIR HE R DKIIVF+D+ FAL AM++ K I G
Sbjct: 570 IHLKRQLCVCNPIKFMYCEYLIRLHE-ARQDKIIVFSDDKFALRTLAMQMGKEHIDGDVP 628
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
+R I+ +K + TIF SK+ DN+ D+PEANV+IQISSH GSRRQEAQRLGRILR
Sbjct: 629 DRQRHDIINRYKTTPSFRTIFFSKIADNAFDLPEANVLIQISSHGGSRRQEAQRLGRILR 688
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSG 418
K DR G EYNA+FYSLVS DT EM Y+TKRQ+FL+ K +
Sbjct: 689 KKKN--DRTKPG--EYNAYFYSLVSQDTLEMAYATKRQRFLV-----MKYLPGFEDEGRT 739
Query: 419 ADLSYHRLDEQLALLGKVLS----------AGDDAVGLEQLDEDADDIALHKARRIAGSM 468
++ +Q LL ++L+ A D+ + +D DD+ +R A S+
Sbjct: 740 RPYAFGTEHKQTQLLSRILANKMPGYGVCCAQDEEGRTSIVGDDDDDLYPAAVQRRATSL 799
Query: 469 SAMSGAQGMVYMEYR 483
S+ SGA MVY E R
Sbjct: 800 SSFSGANNMVYQEIR 814
>gi|294940084|ref|XP_002782670.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
gi|239894522|gb|EER14465.1| DNA repair helicase, putative [Perkinsus marinus ATCC 50983]
Length = 796
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 231/462 (50%), Positives = 305/462 (66%), Gaps = 13/462 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D+ + +NM+ +P RPYQE+SL KMF RARSG+IVLPCGAGK+LVG
Sbjct: 302 LLEEYDFRDDDDSNYINMQFRPTTIVRPYQERSLHKMFSGSRARSGMIVLPCGAGKTLVG 361
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-RGNAGVVVT 119
++AA +KK + L T AV+VDQW QF+L+ +I D + T+++K+ ++++
Sbjct: 362 ITAAATMKKRTMVLTTTAVAVDQWKRQFELFCSISPDDVITLTAENKQPIPEDRPCILIS 421
Query: 120 TYNMVAFGGKR-SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TY+M + +R S S+ + E + EWGLL+ DEV V+PA FR V + ++HCKLGLT
Sbjct: 422 TYSMFSVSYERMSRASKAVFESVTKLEWGLLVADEVQVMPAKTFRSVATTVRAHCKLGLT 481
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVREDE + DL +LIGPKLYEANW +LV G++A VQC EVW M F+ YL+
Sbjct: 482 ATLVREDELVEDLQYLIGPKLYEANWQELVNAGYLARVQCIEVWSEMPPLFWKAYLETNT 541
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
K+ALY N NK ACE+L+ HE RGDKIIVF DN+ L E A K RK I G+ S
Sbjct: 542 YHVKRALYTSNTNKLMACEYLVALHE-SRGDKIIVFCDNVVLLKEMAQKTRKAFICGSVS 600
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER ++ F+ S +N I+LS+VGDN+IDIP ANV+IQISSH GSRRQEAQRLGRILR
Sbjct: 601 MAERMACIRCFQHSDKINCIYLSQVGDNAIDIPNANVVIQISSHYGSRRQEAQRLGRILR 660
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP--D 416
K +D AG +NA+FYSLVS DT E Y+ KRQ++L+DQGYSFKVI
Sbjct: 661 PKAYRDD--AG----FNAYFYSLVSKDTPEKEYALKRQKYLVDQGYSFKVIADFDESVRK 714
Query: 417 SGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIAL 458
SG +Y + + +L L AG G E E+ ++++
Sbjct: 715 SGLKFAYSGPEAEQHVLEMALVAGGS--GGESAREEEQNLSI 754
>gi|294955554|ref|XP_002788563.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
gi|239904104|gb|EER20359.1| DNA helicase, putative [Perkinsus marinus ATCC 50983]
Length = 804
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 227/444 (51%), Positives = 297/444 (66%), Gaps = 11/444 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR+D+ + +NM+ +P RPYQE+SL KMF RARSG+IVLPCGAGK+LVG
Sbjct: 310 LLEEYDFRDDDDSNYINMQFRPTTIVRPYQERSLHKMFSGSRARSGMIVLPCGAGKTLVG 369
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-RGNAGVVVT 119
++AA +KK + L T AV+VDQW QF+L+ +I D + T+++K+ ++++
Sbjct: 370 ITAAATMKKRTMVLTTTAVAVDQWKRQFELFCSISPDDVITLTAENKQPIPEDRPCILIS 429
Query: 120 TYNMVAFGGKR-SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TY+M + +R S S+ + E + EWGLL+ DEV V+PA FR V + ++HCKLGLT
Sbjct: 430 TYSMFSVSYERMSRASKAVFESVTKLEWGLLVADEVQVMPAKTFRSVATTVRAHCKLGLT 489
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVREDE + DL +LIGPKLYEANW +LV G++A VQC EVW M F+ YL+
Sbjct: 490 ATLVREDELVEDLQYLIGPKLYEANWQELVNAGYLARVQCIEVWSEMPPLFWKAYLETNT 549
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
K+ALY N NK ACE+L+ HE RGDKIIVF DN+ L E A + RK I G+ S
Sbjct: 550 YHVKRALYTSNTNKLMACEYLVALHE-SRGDKIIVFCDNVVLLKEMAQRTRKAFICGSVS 608
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER ++ F+ S +N I+LS+VGDN+IDIP ANV+IQISSH GSRRQEAQRLGRILR
Sbjct: 609 MAERMACIRCFQHSDKINCIYLSQVGDNAIDIPNANVVIQISSHYGSRRQEAQRLGRILR 668
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP--D 416
K +D AG +NA+FYSLVS DT E Y+ KRQ++L+DQGYSFKVI
Sbjct: 669 PKAYRDD--AG----FNAYFYSLVSKDTPEKEYALKRQKYLVDQGYSFKVIADFDESVRK 722
Query: 417 SGADLSYHRLDEQLALLGKVLSAG 440
SG +Y + + +L L AG
Sbjct: 723 SGLKFAYSGPEAEQHVLEMALVAG 746
>gi|355686457|gb|AER98064.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3 [Mustela putorius furo]
Length = 362
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/353 (61%), Positives = 272/353 (77%), Gaps = 10/353 (2%)
Query: 130 RSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERIT 189
RS E+E+++E ++ +EWGL+++DEVH +PA MFR+V+++ ++HCKLGLTATLVRED++I
Sbjct: 1 RSWEAERVMEWLKTQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIV 60
Query: 190 DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249
DLNFLIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +KK+ LY MN
Sbjct: 61 DLNFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TKKRILLYTMN 119
Query: 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAF 309
PNKFRAC+FLI+FHE +R DKIIVFADN+FAL EYA++L KP IYG TS ER +ILQ F
Sbjct: 120 PNKFRACQFLIKFHE-RRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNF 178
Query: 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 369
K + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK +
Sbjct: 179 KHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGM------ 232
Query: 370 GKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQ 429
EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +L++ +EQ
Sbjct: 233 VAEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMED-EELAFSTREEQ 291
Query: 430 LALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEY 482
LL KVL+A D E + + + +RR G+MS+MSGA VYMEY
Sbjct: 292 QQLLQKVLAATDLDAEEEVVAGEFGSRSSQVSRRF-GTMSSMSGADDTVYMEY 343
>gi|154418588|ref|XP_001582312.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
gi|121916546|gb|EAY21326.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
Length = 740
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/447 (46%), Positives = 303/447 (67%), Gaps = 11/447 (2%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
+EYDF ND +LN+ L+ RPYQEK+LSKMF GRA+SGIIVLPCGAGK+LVG++
Sbjct: 274 DEYDFMNDKSLKNLNIRLRTETNIRPYQEKALSKMFSGGRAKSGIIVLPCGAGKTLVGIT 333
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122
A I K + + + V QWA QF LW+ + + TS++K+ ++VTTY
Sbjct: 334 AVATINKPAVVVCNSVEPVKQWANQFNLWTNVPGGVVVVLTSENKQALPDKPCILVTTYG 393
Query: 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182
M+ +RS ES+K+I++I R+WG+L+MDEV A FR V + K+H +LGLTAT+V
Sbjct: 394 MLTSSARRSAESQKVIDQITGRDWGILVMDEVQEAAAEKFRNVTDMVKAHTRLGLTATMV 453
Query: 183 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK-KENSKK 241
RED +I DL +L+GPKLYEANW++L + G++A V+C E+ M++EF+ +YL ++ K
Sbjct: 454 REDGKIDDLKYLVGPKLYEANWIELSESGYLARVKCFEILVTMSQEFYKKYLTLDKDPIK 513
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
++ L NPNK E L+++HE RGDKI+VF D L + + A +L +P ++G S+ E
Sbjct: 514 RRVLAASNPNKIDVLESLLQYHE-ARGDKILVFCDYLQIIEKLARRLDRPHLHGGISNNE 572
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
RTK+ FK ++ +NTI LSK+GD +ID+P ANV+IQ+ SH G+R QE+QRLGR+LR K
Sbjct: 573 RTKLFNKFKTTKKVNTIILSKIGDKAIDLPSANVLIQLCSHFGARMQESQRLGRVLRPK- 631
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK-VITSLPPPDSGAD 420
G +EYNAFFY+LVS DT+E++YS KRQQFL+DQGYS++ V+ ++ + A
Sbjct: 632 ------PGRTDEYNAFFYTLVSQDTEEIYYSAKRQQFLVDQGYSYEPVVNAMERWPNSAP 685
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLE 447
LS +++ L +++ DD++GL+
Sbjct: 686 LSLDTQEKREDWLRQMMDT-DDSLGLD 711
>gi|428175063|gb|EKX43955.1| ERCC3/XPB/SSL2/Rad25 nucleotide excision repair [Guillardia theta
CCMP2712]
Length = 694
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/415 (50%), Positives = 288/415 (69%), Gaps = 12/415 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDF ND V PDL +E +P R YQEKSLSKMF +GRARSG IVLPCGAGK+LVG
Sbjct: 187 VLEEYDFANDRVTPDLKIEARPGTFIRSYQEKSLSKMFSHGRARSGFIVLPCGAGKTLVG 246
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQF-KLWSTIQDDQICRFTSDSKERFRGNAG-VVV 118
+SA IKK + +++V QW QF W+ +++ + F S + G +++
Sbjct: 247 ISAVANIKKCAAVICNTSMAVTQWKQQFTSTWTNVKESDVTCFLSKGGDWQNKPLGKLLI 306
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TTY M+ KRS+ E +IEEI+ R+WG++++DEVH+ A F +V+++ +HCKLGLT
Sbjct: 307 TTYPMITLDKKRSKAGEALIEEIKKRQWGIIVLDEVHLSFAEKFWQVLNVVNAHCKLGLT 366
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED++I +L LIGPKLYEA+W DL G++A VQC EVWCPMT F YL +
Sbjct: 367 ATLVREDDKIKELKNLIGPKLYEADWQDLSNQGYLARVQCVEVWCPMTPLFMRTYL-EST 425
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+++++ L++MNPNK A EFLI F E+ G KIIVF+D+L + Y+ ++ + + G
Sbjct: 426 ARQRKDLWIMNPNKLAAVEFLIHFWEEA-GHKIIVFSDDLRPIVAYSDRMNRRCMTGDDD 484
Query: 299 HVERTKILQAFK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357
R ++L F+ S ++ T+F+S VGD +ID+P+A+VIIQISS+ GSR++EAQRLGRIL
Sbjct: 485 AATREEVLSKFRDASSEVKTLFMSSVGDAAIDLPDASVIIQISSNFGSRQKEAQRLGRIL 544
Query: 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
R K G YNA FY+LVS DTQEM+YSTKRQ++L+DQGY+FKV+T L
Sbjct: 545 RPK-------PGSNARYNAHFYTLVSKDTQEMYYSTKRQRYLVDQGYAFKVVTQL 592
>gi|291000979|ref|XP_002683056.1| predicted protein [Naegleria gruberi]
gi|284096685|gb|EFC50312.1| predicted protein [Naegleria gruberi]
Length = 729
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 216/381 (56%), Positives = 269/381 (70%), Gaps = 20/381 (5%)
Query: 77 NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG--KRSEES 134
N +W QFKLWSTI ++++ FTS K+ + ++ KRS E+
Sbjct: 299 NPTECIEWKNQFKLWSTIDENRVVVFTSQEKDALPKDDDPLIIITTYTMITHTRKRSGEA 358
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+++++ I++REWGLL++DEVHVVPA+MFR V S+ KSHCKLGLTATL+RED + DL FL
Sbjct: 359 KEVMDYIQSREWGLLILDEVHVVPANMFRHVASV-KSHCKLGLTATLLREDNKTDDLYFL 417
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254
IGPKLYEANWLDL + G +ANVQC EVWCPMT EFF+EYL N+KKK LYVMNPNKFR
Sbjct: 418 IGPKLYEANWLDLQQKGHLANVQCVEVWCPMTAEFFAEYLTA-NAKKKTLLYVMNPNKFR 476
Query: 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRD 314
ACEFLIR+HE+Q GDKIIVF+DN+FAL EYA KL P I+G T ER L F+ +
Sbjct: 477 ACEFLIRYHEKQ-GDKIIVFSDNVFALQEYAEKLGVPYIFGNTKQQERVYYLNQFRNTNH 535
Query: 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEY 374
NTIF+SKVGD +IDIPEA VIIQISSH GSRRQEAQRLGRILR KG GG +
Sbjct: 536 YNTIFISKVGDTAIDIPEATVIIQISSHFGSRRQEAQRLGRILRPKG-------GGLKNQ 588
Query: 375 NAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP------PPDSGADLSY-HRLD 427
A+FY+LVS DTQEMF+STKRQQFLI+QGYSF+V+ + + G L + +
Sbjct: 589 QAYFYTLVSQDTQEMFFSTKRQQFLINQGYSFRVLPDIQKYYRQGANEMGLTLKHMNTKK 648
Query: 428 EQLALLGKVLSAGDDAVGLEQ 448
E+L +L ++ +DA G E+
Sbjct: 649 EELDMLA-IVKKAEDARGQEE 668
>gi|397648048|gb|EJK77960.1| hypothetical protein THAOC_00170, partial [Thalassiosira oceanica]
Length = 594
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 193/342 (56%), Positives = 240/342 (70%), Gaps = 39/342 (11%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSK------------------------ 36
++EEYDFRND+ NPD+ M+LKPH + R YQE+SLSK
Sbjct: 261 LMEEYDFRNDSANPDVPMDLKPHTRIRRYQERSLSKVRAFIILDRRLRCAEGLLSVLTDV 320
Query: 37 -----MFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91
MFGNGRARSGIIVLPCGAGK+L GV+AA IKKS +CL TNAVSV QW +QF+LW
Sbjct: 321 HTQFQMFGNGRARSGIIVLPCGAGKTLTGVTAAQTIKKSVVCLCTNAVSVLQWKYQFQLW 380
Query: 92 STIQDDQICRFTSDSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLL 150
+TI D+ IC FTSD KE G V++TTY M++F G+RS+++++++E IR REWGLLL
Sbjct: 381 TTIPDENICVFTSDRKEDLVPGRPVVLITTYTMMSFSGRRSDKAQEVMESIRGREWGLLL 440
Query: 151 MDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 210
MDEVHVVPA MFR+VI K+HC+LG+ LNFLIGPKLYEANW+DL
Sbjct: 441 MDEVHVVPAQMFRRVIGTVKAHCRLGVDGD--------AHLNFLIGPKLYEANWMDLTTQ 492
Query: 211 GFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 270
G++ANVQC EVWCPMT F EYL + + KQ LYVMNP+K RA EFL++FHE +RGDK
Sbjct: 493 GYLANVQCVEVWCPMTGPFMREYLMANSGRMKQQLYVMNPSKLRATEFLVKFHE-ERGDK 551
Query: 271 IIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCS 312
IIVF+D +++L YA L++PMIYG TS ER +IL F+ S
Sbjct: 552 IIVFSDLVYSLKLYAAMLKRPMIYGETSERERQQILGVFRTS 593
>gi|380478837|emb|CCF43372.1| DNA repair helicase RAD25 [Colletotrichum higginsianum]
Length = 374
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 203/360 (56%), Positives = 256/360 (71%), Gaps = 29/360 (8%)
Query: 137 IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
+++ ++ REWGL+L+DEVHVVPA++FRKV S K+H KLGLTATL+RED++I+DLNFLIG
Sbjct: 1 MMDFLQTREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTATLLREDDKISDLNFLIG 60
Query: 197 PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC 256
PKLYEANW++L + G IA VQCAEVWCPMT EF+ EYLK +++K+ LY+MNP KF+A
Sbjct: 61 PKLYEANWMELSEQGHIAKVQCAEVWCPMTTEFYDEYLKA-SARKRALLYIMNPRKFQAA 119
Query: 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLN 316
++LI +HE RGDKIIVF+DN++AL YA KL K I+G T ER ILQ F+ + +N
Sbjct: 120 QYLINYHE-SRGDKIIVFSDNVYALKTYAEKLEKAYIFGGTGQAERMNILQNFQHNPQVN 178
Query: 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 376
T+FLSK+GD S+D+PEA +IQISSH GSRRQEAQRLGRILRAK + E +NA
Sbjct: 179 TLFLSKIGDTSLDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-------NDEGFNA 231
Query: 377 FFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKV 436
FFYSLVS DTQEM+YS+KRQ FL+DQGY+FKVIT L + L+Y E+ LL KV
Sbjct: 232 FFYSLVSKDTQEMYYSSKRQAFLVDQGYAFKVITQLANIEKTPGLAYAAASERRELLQKV 291
Query: 437 LSAGDDAVGLEQLDEDADDIALHK---------------ARRIAGSMSAMSGAQGMVYME 481
L ++ G E DE DD+ H ARR AG + +SG Q M YME
Sbjct: 292 LI--ENEAGGE--DEVIDDL-FHSGTMGRAPLRGKKKAAARRTAGLLGDLSGGQDMAYME 346
>gi|322785271|gb|EFZ11965.1| hypothetical protein SINV_03753 [Solenopsis invicta]
Length = 586
Score = 393 bits (1010), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/360 (54%), Positives = 247/360 (68%), Gaps = 58/360 (16%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND +NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 216 LLAEYDFRNDTINPDINIDLKPSAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 275
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G+++TT
Sbjct: 276 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILITT 334
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 335 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 394
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K GFIA VQCAEVWCP
Sbjct: 395 LLREDDKIADLNFLIGPKLYEANWLELQKRGFIARVQCAEVWCP---------------- 438
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
M P +R E+L A K+ + +
Sbjct: 439 -------MTPEFYR--EYL-------------------------ACKMSRKL-------S 457
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
ER +ILQ FK + +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 458 ERIQILQNFKFNMKVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK 517
>gi|123492544|ref|XP_001326086.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
gi|121908995|gb|EAY13863.1| DNA repair helicase rad25 family protein [Trichomonas vaginalis G3]
Length = 744
Score = 380 bits (975), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/409 (45%), Positives = 278/409 (67%), Gaps = 10/409 (2%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
+EYDF ND +L ++LK + RPYQEK+L+KMF GR+ SGIIVLPCGAGK+LVG++
Sbjct: 276 DEYDFMNDKTIDNLGIQLKNTTRIRPYQEKALTKMFSGGRSISGIIVLPCGAGKTLVGIA 335
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-RGNAGVVVTTY 121
A I K + + N ++V QW Q ++T+ +I F+ K+ + +V++TY
Sbjct: 336 ALATINKPTVIVCNNRLTVKQWYNQILQYATMDMKKIFLFSDTEKQALPQTGPCIVISTY 395
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+M++ KRS++S++II++I++R+WGLL++DEV A+ FR V + K+H +LGLTATL
Sbjct: 396 SMLSNPNKRSDKSQQIIDQIKSRDWGLLILDEVQDSAANTFRNVTDIAKAHTRLGLTATL 455
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
+RED++I+DL +L+GPKLYEANWL+L + G++A V+C EV PMT F+ YL ++ ++
Sbjct: 456 IREDDKISDLRYLVGPKLYEANWLELSEQGYLARVKCFEVTVPMTASFYKYYLLSDHFRQ 515
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ L NPNK R +I+FHE +RGDK++VF D + L A L P I+G T
Sbjct: 516 R-ILCSSNPNKIRTVAGIIKFHE-RRGDKVLVFCDIIHILIHLAGLLHCPEIHGETPENV 573
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R+ I FK +NT+ LS VGD +ID+P A+V++Q+ S+ G+R QE+QRLGR+LR K
Sbjct: 574 RSSIFHEFKNGSKVNTLILSSVGDKAIDLPSASVVVQVCSNYGARMQESQRLGRVLRPK- 632
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
+G +EE+NAFFYS +S T ++ YS +RQQFL+DQGY ++ ++
Sbjct: 633 ------SGNREEFNAFFYSCISDMTTDLKYSARRQQFLVDQGYVYEPVS 675
>gi|300123236|emb|CBK24509.2| unnamed protein product [Blastocystis hominis]
Length = 748
Score = 369 bits (947), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 192/415 (46%), Positives = 270/415 (65%), Gaps = 20/415 (4%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
N N + + L P RPYQE+ L+KMFGNGRARSG+IVLPCGAGK++VG++AA IK
Sbjct: 263 NIQRNRTIRIRLAPSTHIRPYQERCLNKMFGNGRARSGLIVLPCGAGKTIVGITAAVTIK 322
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
KSC+ + + +S QW F + ++ D I D ++ N +++TTY +
Sbjct: 323 KSCIVVCNSTLSALQWRDSFLSFCDVKGDCIRILVKDKRDPL-PNPCILLTTYYQLIKRR 381
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
K ++E E I+ EI +REWGLL++DEVHV PA F++V+S K+HCKLGLTATLVRED +I
Sbjct: 382 KINKEREAILNEIASREWGLLVLDEVHVCPADSFQEVVSTVKAHCKLGLTATLVREDGKI 441
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY-V 247
DL+FLIGPKLYEANW+DL G+++ V+C EVWC M F++E+L++ KQ L V
Sbjct: 442 KDLDFLIGPKLYEANWMDLTNKGYLSPVRCLEVWCDMNPLFYNEFLRRSKEYNKQKLLAV 501
Query: 248 MNPNKFRACEFLIRFHEQQRG----------DKIIVFADNLFALTEYAMKLRKPMIYGAT 297
+NP K +A +L+ H QRG DKI+VF D++F L ++ + G+
Sbjct: 502 VNPEKLKALAYLLYIH-VQRGFSSPLLFSSSDKILVFCDSIFPLHKFGELFGYRYLDGSC 560
Query: 298 SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357
R ++L F+ S + +FLSK+GD SID+PEA V+IQ+ GSRRQEAQRLGRIL
Sbjct: 561 GEPYRKRVLNDFRNSSAGSVVFLSKIGDTSIDLPEATVLIQVEGQEGSRRQEAQRLGRIL 620
Query: 358 RAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
R K L + G + AFFY+LVS DT+E+ + RQ++L+ QGY++KV+ ++
Sbjct: 621 RPKMGL----SMGNQ---AFFYTLVSRDTKEVGNALNRQRYLMAQGYTYKVLVNI 668
>gi|67467062|ref|XP_649651.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466136|gb|EAL44265.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449709415|gb|EMD48686.1| rad25/xpB DNA repair helicase, putative [Entamoeba histolytica
KU27]
Length = 648
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 275/432 (63%), Gaps = 26/432 (6%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
EEY F D +L ++L+ RP+QE++L ++F N ARSGI+VLPCGAGK+L ++
Sbjct: 208 EEYHFLRDK-QKELPIQLRKDCL-RPHQERALQQIFDNEMARSGIVVLPCGAGKTLTAIA 265
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122
A +IK+S + L SV QW +F WSTI+ D I S KE+ +A V++T+Y+
Sbjct: 266 ACSKIKRSTIVLTHTTQSVFQWKEEFLKWSTIKPDAIKLCVSSKKEQLGDDACVLITSYS 325
Query: 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182
M++ G+R ++II+++ REWG ++ DEVH K + K+ CKLGLTATL+
Sbjct: 326 MLSHTGEREYAGQRIIDDLLKREWGFIIFDEVHGSTTDNIEKFVCKIKAQCKLGLTATLI 385
Query: 183 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242
RED+RI DL F+IGP LYEA+W +L K G+IAN +C EV CPMTK ++S Y++ ++SK K
Sbjct: 386 REDDRIRDLEFMIGPMLYEASWQELAKQGYIANAKCFEVICPMTKTYYSAYVEADDSKLK 445
Query: 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY--AMKLRKPMIYGATSHV 300
Q L +NPNK AC++L+ H+ GDKII+F + L Y +KL+K + G TS
Sbjct: 446 QCLAQLNPNKIDACKYLLEQHKAH-GDKIIIFCNELKPAGFYKEKLKLQKCYMDGNTSEE 504
Query: 301 ERTKILQAFKCSRD-LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
R +L F+ RD ++ IF SK+GD +D+P+A+V IQ+SS +GSRRQEAQRLGRILRA
Sbjct: 505 HRRNLLDQFR--RDEISVIFCSKIGDVGLDLPDASVAIQLSSSSGSRRQEAQRLGRILRA 562
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL------- 412
K +A+FY+L S DT+EM++S +RQ+ + GY+FKVI S
Sbjct: 563 KDGTN----------SAYFYTLTSKDTREMYFSQRRQRVMRQNGYTFKVIDSAVIKPLRK 612
Query: 413 -PPPDSGADLSY 423
P G D++Y
Sbjct: 613 EDPAKEGKDINY 624
>gi|407034427|gb|EKE37204.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 651
Score = 363 bits (931), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 275/432 (63%), Gaps = 26/432 (6%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
EEY F D +L ++L+ RP+QE++L ++F N ARSGI+VLPCGAGK+L ++
Sbjct: 208 EEYHFLRDK-QKELPIQLRKDCL-RPHQERALQQIFDNEMARSGIVVLPCGAGKTLTAIA 265
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122
A +IK+S + L SV QW +F WSTI+ D I S KE+ +A V++T+Y+
Sbjct: 266 ACSKIKRSTIVLTHTTQSVFQWKEEFLKWSTIKPDAIKLCVSSKKEQLGDDACVLITSYS 325
Query: 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182
M++ G+R ++II+++ REWG ++ DEVH K + K+ CKLGLTATL+
Sbjct: 326 MLSHTGEREYAGQRIIDDLLKREWGFIIFDEVHGSTTDNIEKFVCKIKAQCKLGLTATLI 385
Query: 183 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242
RED+RI DL F+IGP LYEA+W +L K G+IAN +C EV CPMTK ++S Y++ ++SK K
Sbjct: 386 REDDRIRDLEFMIGPMLYEASWQELAKQGYIANAKCFEVICPMTKTYYSAYVEADDSKLK 445
Query: 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY--AMKLRKPMIYGATSHV 300
Q L +NPNK AC++L+ H + GDKII+F + L Y +KL+K + G TS
Sbjct: 446 QCLAQLNPNKIDACKYLLEQH-KAHGDKIIIFCNELKPAGFYKEKLKLQKCYMDGNTSEE 504
Query: 301 ERTKILQAFKCSRD-LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
R +L F+ RD ++ IF SK+GD +D+P+A+V IQ+SS +GSRRQEAQRLGRILRA
Sbjct: 505 HRRNLLDQFR--RDEISVIFCSKIGDVGLDLPDASVAIQLSSSSGSRRQEAQRLGRILRA 562
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL------- 412
K +A+FY+L S DT+EM++S +RQ+ + GY+FKVI S
Sbjct: 563 KDGTN----------SAYFYTLTSKDTREMYFSQRRQRVMRQNGYTFKVIDSAVIKPLRK 612
Query: 413 -PPPDSGADLSY 423
P G D++Y
Sbjct: 613 EDPAKEGKDINY 624
>gi|167392006|ref|XP_001739987.1| rad25/xp-B DNA repair helicase [Entamoeba dispar SAW760]
gi|165896120|gb|EDR23627.1| rad25/xp-B DNA repair helicase, putative [Entamoeba dispar SAW760]
Length = 651
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/432 (44%), Positives = 275/432 (63%), Gaps = 26/432 (6%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
EEY F D +L ++L+ RP+QE++L ++F N ARSGI+VLPCGAGK+L ++
Sbjct: 208 EEYHFLRDK-QKELPIQLRKDCL-RPHQERALQQIFDNEMARSGIVVLPCGAGKTLTAIA 265
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122
A +IK+S + L SV QW +F WSTI+ D I S KE+ +A V++T+Y+
Sbjct: 266 ACSKIKRSTIVLTHTTQSVFQWKEEFLKWSTIKPDAIKLCVSSKKEQLGDDACVLITSYS 325
Query: 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182
M++ G+R ++II+++ REWG ++ DEVH K + K+ CKLGLTATL+
Sbjct: 326 MLSHTGEREYAGQRIIDDLLKREWGFIIFDEVHGSTTDNIEKFVCKIKAQCKLGLTATLI 385
Query: 183 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242
RED+RI DL F+IGP LYEA+W +L K G+IAN +C EV CPMTK ++S Y++ ++SK K
Sbjct: 386 REDDRIRDLEFMIGPMLYEASWQELAKQGYIANAKCFEVICPMTKTYYSAYVEADDSKLK 445
Query: 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY--AMKLRKPMIYGATSHV 300
Q L +NPNK AC++L+ H+ GDKII+F + L Y +KL+K + G TS
Sbjct: 446 QCLAQLNPNKIDACKYLLEQHKAH-GDKIIIFCNELKPAGFYKEKLKLQKCYMDGNTSEE 504
Query: 301 ERTKILQAFKCSRD-LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
R +L F+ RD ++ IF SK+GD +D+P+A+V IQ+SS +GSRRQEAQRLGRILRA
Sbjct: 505 HRRNLLDQFR--RDEISVIFCSKIGDVGLDLPDASVAIQLSSSSGSRRQEAQRLGRILRA 562
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL------- 412
K +A+FY+L S DT+EM++S +RQ+ + GY+FKVI S
Sbjct: 563 KDGTN----------SAYFYTLTSKDTREMYFSQRRQRVMRQNGYTFKVIDSAVIKPLRK 612
Query: 413 -PPPDSGADLSY 423
P G D++Y
Sbjct: 613 EDPAKEGKDINY 624
>gi|440298661|gb|ELP91292.1| DNA repair helicase XPB2, putative [Entamoeba invadens IP1]
Length = 632
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 181/410 (44%), Positives = 263/410 (64%), Gaps = 10/410 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+ EEY F D +L EL+ P+Q K+L +MF N ARSGIIVLPCG+GK+L
Sbjct: 208 IYEEYHFLKDK-QKELFGELRSDC-LHPHQAKALQQMFDNEIARSGIIVLPCGSGKTLTA 265
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++A +IK+S + + + SV QW +F WST++ + + SD KE+ +A ++ TT
Sbjct: 266 IAACMKIKRSAVVIGNSTQSVLQWKNEFLRWSTVKAESLKLCISDKKEQLGDDACILFTT 325
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M++F G R + ++I+ ++ REWG+++ DEV P R + K+ CKLGLTAT
Sbjct: 326 YSMLSFSGTRQYDGQRIVNDLMKREWGMIIFDEVQSAPTERVRDFCNGIKAQCKLGLTAT 385
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
LVRED+ I +L F+IGPKLYEA+W DL G+IA +C E+ CPM+ F++EY+ E +
Sbjct: 386 LVREDKNINELEFMIGPKLYEASWQDLANQGYIAKAKCFEILCPMSTSFYTEYVSAEKNI 445
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+++ L VMN NK AC+FL++ H GDK+I+F D+L + Y+ KL ++ G T
Sbjct: 446 ERRLLSVMNSNKVDACKFLVKQH-LAHGDKVIIFCDDLAPASYYSKKLNCVLMDGKTQEE 504
Query: 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
+R KIL F+ + + + ++V D SID+P+A+V IQ+SS+ SRRQEAQRLGRILRAK
Sbjct: 505 KRRKILDGFR-NGEHKVVLFTRVADVSIDLPDASVAIQLSSNGASRRQEAQRLGRILRAK 563
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
NA+FY+L S DT+EM++S KRQ FL+D+GY FK I
Sbjct: 564 K------GAASNRANAYFYTLTSQDTREMYFSQKRQHFLLDKGYVFKTIN 607
>gi|393912228|gb|EJD76645.1| helicase, variant [Loa loa]
Length = 606
Score = 358 bits (918), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/276 (60%), Positives = 216/276 (78%), Gaps = 7/276 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND N +L ++LK RPYQEKSL KMFGN RARSG+IVLPCGAGK+LVG
Sbjct: 301 LLAEYDFRNDTFNENLGIDLKSSTNLRPYQEKSLRKMFGNSRARSGVIVLPCGAGKTLVG 360
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG----- 115
V+AA + K CL LAT+ VSV+QW QFKLWSTI+DDQ+ RFT ++++ +
Sbjct: 361 VTAATTVNKRCLVLATSNVSVEQWRGQFKLWSTIRDDQLIRFTREARDPVPSGSNANKPI 420
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
V ++TY+MVA+ GKR+ +E+ ++ I +REWGL+L+DEVH +PA MFR+V+++ ++HCKL
Sbjct: 421 VCISTYSMVAYTGKRTYAAEEAMKYIESREWGLVLLDEVHTIPAKMFRRVLTIVRAHCKL 480
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTATLVRED++ITDLNFLIGPK+YEANW++L K G IA VQCAEVWCPM+ EF+S YL+
Sbjct: 481 GLTATLVREDDKITDLNFLIGPKIYEANWMELEKAGQIAKVQCAEVWCPMSAEFYSYYLR 540
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKI 271
+ ++ L VMNPNKFR C+FLI +HE +R DKI
Sbjct: 541 AQIG-RRLLLAVMNPNKFRICQFLIMYHE-RRNDKI 574
>gi|118400703|ref|XP_001032673.1| DNA repair helicase rad25 family protein [Tetrahymena thermophila]
gi|89287017|gb|EAR85010.1| DNA repair helicase rad25 family protein [Tetrahymena thermophila
SB210]
Length = 832
Score = 356 bits (913), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 191/439 (43%), Positives = 271/439 (61%), Gaps = 33/439 (7%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+++EYDF N + L +ELKP + R YQE++L +F +ARSG+I+LPCGAGK++VG
Sbjct: 324 LIQEYDFENKSFK-QLEIELKPKIKVRYYQERALKNIFIQKKARSGLIILPCGAGKTIVG 382
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT----SDSKERFRGNAGV 116
V A RIK+S + + + VSVDQW + + W+TI ++I R T + R +
Sbjct: 383 VIAIERIKQSTVIICDSDVSVDQWRDELERWTTINKNKIVRLTGRIVDEWPTRTTDEPII 442
Query: 117 VVTTYNMVAFGGKRSE----------ESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166
V+TTY M+ KR + + + I+ ++ R+WG+ ++DEVH +PA+ F+ V+
Sbjct: 443 VITTYYMLV--KKREDLPPTQIAQKSKKRQYIDSMKERKWGVCVIDEVHKLPANTFQNVL 500
Query: 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT 226
K H KLGLTAT REDE+I +L ++IGPKLYE NW DLV GF+A C E+ C M+
Sbjct: 501 KQYKFHFKLGLTATPYREDEKIINLFYMIGPKLYEENWYDLVSQGFLAKPYCVEIRCEMS 560
Query: 227 KEFFSEYLKKE--------NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL 278
+ + SEY KK+ +++ ++ NP KF+ E+LI+ HE +RGDKI+VF D
Sbjct: 561 QLWMSEYNKKDLKTGKNYYRGPQRELIHTSNPRKFKTLEYLIKVHE-ERGDKILVFCDRP 619
Query: 279 FALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ 338
+ Y L+ P+IYG S ER KI FK S +NTIFLS+VGD +ID+P+ANV IQ
Sbjct: 620 MIIDYYGNILKYPVIYGDVSQDERKKIFNLFKVSNQINTIFLSRVGDTAIDLPQANVGIQ 679
Query: 339 ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398
I H SRRQE QRLGRI+RAK + +YNAF+Y+LVS T E Y RQ+
Sbjct: 680 IGMHFKSRRQEVQRLGRIMRAKENYDG-------QYNAFWYTLVSKGTDETSYCLARQKC 732
Query: 399 LIDQGYSFKVITSLPPPDS 417
LI+QG+ +++I P S
Sbjct: 733 LINQGFKYEIIDEKDLPYS 751
>gi|340506420|gb|EGR32554.1| hypothetical protein IMG5_077910 [Ichthyophthirius multifiliis]
Length = 736
Score = 349 bits (896), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 190/460 (41%), Positives = 287/460 (62%), Gaps = 27/460 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+++EYDF+ + L M+++P + R YQEK+L +F +ARSG+I+LP GAGK++VG
Sbjct: 238 LIQEYDFQKQDSFKYLQMDIQPKMKIRYYQEKALKNIFIEQKARSGLIILPYGAGKTIVG 297
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE----RFRGNAGV 116
V A RIK+S + + + VSVDQW + + W+TI ++I RFT + R + +
Sbjct: 298 VIAIERIKQSTIVICDSDVSVDQWRDELERWTTISRNKIVRFTGRITDEWITRETDDPII 357
Query: 117 VVTTYNMVAFGGKRSE----ESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH 172
++TTY M++ ++++ + ++ I+ I+ ++WG+ ++DEVH +PA+ F+ V+ K H
Sbjct: 358 LLTTYYMLSKKREKNQSQTSKKQQYIQTIQEKQWGVCIIDEVHKLPANTFQNVLKQYKFH 417
Query: 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSE 232
KLGLTAT REDE+I++L ++IGPKLYE NW DLVK GF+A+ C E+ C M + + +
Sbjct: 418 FKLGLTATPYREDEKISNLFYMIGPKLYEENWHDLVKQGFLASPYCVEIRCNMAEYWKQQ 477
Query: 233 YLKKENSKKK--------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 284
Y +K + +K + L+ NPNKF EFLI+ HE RGDKI+VF D L Y
Sbjct: 478 YDRKNDISQKRYFIGAQRELLHTSNPNKFNVLEFLIKIHE-DRGDKILVFCDRPVVLEYY 536
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
+ L+ P++ G ER I FK + +NTIFLS+VGD +ID+P ANV IQI H
Sbjct: 537 SKILKYPIVSGNVQQDERKTIYNLFKNTNQINTIFLSRVGDTAIDLPSANVGIQIGIHFK 596
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQE QRLGRI+RAKG + +YNAF+Y+LVS T E+ Y RQ+ LI+QG+
Sbjct: 597 SRRQEVQRLGRIMRAKGNYDG-------QYNAFWYTLVSKCTDEVNYCLSRQKCLINQGF 649
Query: 405 SFKVI--TSLPPPDSGADLSY-HRLDEQLALLGKVLSAGD 441
++V+ + LP + ++++EQ L ++S D
Sbjct: 650 KYEVLDESDLPFRKQPQKFKWMNKINEQDYLYDILMSQED 689
>gi|449685455|ref|XP_004210899.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like [Hydra magnipapillata]
Length = 526
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 170/290 (58%), Positives = 213/290 (73%), Gaps = 12/290 (4%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDF ND +N D+NM+LKP RPYQEKSL KMFGNGRARSG+IVLPCGAGK+LVG
Sbjct: 249 LLAEYDFTNDTINKDINMDLKPSTLLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTLVG 308
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+AAC ++K CL L T+ VSV+QW QFKLW+ I D ICRFTSD+K++ + + VTT
Sbjct: 309 VTAACTVRKKCLVLCTSGVSVEQWKSQFKLWANIDDKHICRFTSDTKDK-PVDCHLAVTT 367
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+A KRS ES I++ ++N EWGL+L+D + + F +++ K L
Sbjct: 368 YSMIAHTMKRSYESTLIMDFLKNTEWGLMLLDGI-----NFFSLKVTVYSVMLKNFLWLL 422
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
+ +RI DLNFLIGPKLYEANW++L G++A VQCAEVWCPM+ EF+ EYL S+
Sbjct: 423 MF---QRI-DLNFLIGPKLYEANWMELQNNGYLARVQCAEVWCPMSPEFYREYLSIP-SR 477
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK 290
K+ YVMNPNKFRACEFLIRFHE +R DKIIVFADN+FAL YA+KL K
Sbjct: 478 KRSLFYVMNPNKFRACEFLIRFHE-RRNDKIIVFADNVFALKHYAVKLNK 526
>gi|217928279|gb|ACK57262.1| CG8019-like protein, partial [Drosophila affinis]
Length = 324
Score = 340 bits (873), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 152/241 (63%), Positives = 195/241 (80%), Gaps = 1/241 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+L EYDFRND NPD+N++LKP A RPYQEKSL KMFGNGRARSG+IVLPCGAGKSLVG
Sbjct: 81 LLAEYDFRNDTNNPDINIDLKPAAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVG 140
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
V+A C ++K L L + VSV+QW QFK+WST D ICRFTS++K++ G G++VTT
Sbjct: 141 VTACCTVRKRALVLCNSGVSVEQWKQQFKMWSTADDSMICRFTSEAKDKPMG-CGILVTT 199
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+M+ KRS E+E+ + ++ +EWG++++DEVH +PA MFR+V+++ +SHCKLGLTAT
Sbjct: 200 YSMITHTQKRSWEAEQTMRWLQEQEWGIMVLDEVHTIPAKMFRRVLTIVQSHCKLGLTAT 259
Query: 181 LVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240
L+RED++I DLNFLIGPKLYEANWL+L K G+IA VQCAEVWCPM+ EF+ EYL + SK
Sbjct: 260 LLREDDKIADLNFLIGPKLYEANWLELQKKGYIARVQCAEVWCPMSPEFYREYLTTKTSK 319
Query: 241 K 241
K
Sbjct: 320 K 320
>gi|340052988|emb|CCC47274.1| putative DNA repair helicase and transcription factor protein,
fragment [Trypanosoma vivax Y486]
Length = 922
Score = 337 bits (864), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 184/425 (43%), Positives = 254/425 (59%), Gaps = 30/425 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D ++EL HA+ RPYQ SL + +A GIIVLPCGAGK+L G+ AA
Sbjct: 354 YDYNEDCTLHVCDLELAGHARLRPYQVASLERFRSGNKAHQGIIVLPCGAGKTLTGIGAA 413
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ SD K+ V +TTY+M+
Sbjct: 414 TIVKKRTIVMCINVMSVLQWQQEFVRWTNLTEDQVTVCISDKKQM---PGDVFITTYSML 470
Query: 125 A------FGGKRSEESE---KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
G ++ E+++ KI+ + + WGLLL+DEVH A F++V++ K C +
Sbjct: 471 IARRTSNLGQEQGEDAKLTSKILFAVEEQPWGLLLLDEVHTALAQNFQEVLNKVKYKCVV 530
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL- 234
GL+ATL+RED RI DL L+GPKLYEANWLDL GF+A V+CAEV CP+ FFSEYL
Sbjct: 531 GLSATLLREDGRIDDLRHLVGPKLYEANWLDLTNAGFLARVECAEVQCPLPISFFSEYLI 590
Query: 235 ---------KKENSKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALTEY 284
++ S +AL +NP K + L+ FH + DK+I+F D++ + Y
Sbjct: 591 AQQEEDPSARRGTSSLARALVCLNPYKLWCTQALLEFHRNRSPPDKVIIFCDDVEGVQYY 650
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A L P + G TS ER +LQ FK S N I LS++GD ++DIP A+V+IQIS
Sbjct: 651 AQHLHVPFMDGKTSDSERANVLQHFKNSSKTNAIILSRIGDVALDIPCASVVIQISGLGA 710
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQEAQRLGRILR K D ++FY+LVS DT EM S +RQ +L DQG+
Sbjct: 711 SRRQEAQRLGRILRPKPPSLDSSC-------SYFYTLVSQDTYEMSQSYERQSWLRDQGF 763
Query: 405 SFKVI 409
S++V+
Sbjct: 764 SYRVL 768
>gi|72387351|ref|XP_844100.1| DNA repair helicase and transcription factor protein [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|62360608|gb|AAX81019.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei]
gi|70800632|gb|AAZ10541.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 938
Score = 334 bits (857), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 176/429 (41%), Positives = 259/429 (60%), Gaps = 34/429 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D+ ++EL + + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 362 YDYVQDHSLHVCDLELSENVRLRPYQVASLERFRSGNKAHQGVIVLPCGAGKTLTGIGAA 421
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ +D K+ V +TTY+M+
Sbjct: 422 ATVKKRTIVMCINVMSVLQWQREFIRWTNLSEDQVTVCIADKKQM---PGDVFITTYSML 478
Query: 125 AFGGKRSEESE-----------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHC 173
+RS E KI+ + + WGLLL+DEVH AH F++V++ K C
Sbjct: 479 I--ARRSNVPEMEQSADAKLTAKILASVGEQPWGLLLLDEVHTALAHNFQEVLNKVKYKC 536
Query: 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233
+GL+ATL+RED++I DL L+GPKLYEANWLDL + GF+A V+CAE+ CP+ K F +EY
Sbjct: 537 VIGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRAGFLARVECAEIQCPLPKAFLTEY 596
Query: 234 LKKEN----------SKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALT 282
L+ ++ ++ ++ +NP K + L+ FH + DK+I+F D + +
Sbjct: 597 LESQSDGDPFARRGTTRMAHSVVCLNPYKLWCTQALLEFHRNRSPPDKVIIFCDQIDGIQ 656
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
YA L P + G TS +ER +LQ F+ S ++N I LS+VGD ++DIP A+V+IQIS
Sbjct: 657 YYAQHLHVPFMDGKTSDMERENLLQYFQHSDNINAIILSRVGDVALDIPCASVVIQISGL 716
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
SRRQEAQRLGRILR K D + ++FY+LVS DT E+ S +RQ +L DQ
Sbjct: 717 GASRRQEAQRLGRILRPKPASLDNVC-------SYFYTLVSQDTHEISQSYERQSWLRDQ 769
Query: 403 GYSFKVITS 411
G+S++V+ S
Sbjct: 770 GFSYRVLQS 778
>gi|261327256|emb|CBH10232.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei gambiense DAL972]
Length = 938
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 176/429 (41%), Positives = 259/429 (60%), Gaps = 34/429 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D+ ++EL + + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 362 YDYVQDHSLHVCDLELSENVRLRPYQVASLERFRSGNKAHQGVIVLPCGAGKTLTGIGAA 421
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ +D K+ V +TTY+M+
Sbjct: 422 ATVKKRTIVMCINVMSVLQWQREFIRWTNLSEDQVTVCIADKKQM---PGDVFITTYSML 478
Query: 125 AFGGKRSEESE-----------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHC 173
+RS E KI+ + + WGLLL+DEVH AH F++V++ K C
Sbjct: 479 I--ARRSNVPEMEQSADAKLTAKILASVGEQPWGLLLLDEVHTALAHNFQEVLNKVKFKC 536
Query: 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233
+GL+ATL+RED++I DL L+GPKLYEANWLDL + GF+A V+CAE+ CP+ K F +EY
Sbjct: 537 VIGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRAGFLARVECAEIQCPLPKAFLTEY 596
Query: 234 LKKEN----------SKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALT 282
L+ ++ ++ ++ +NP K + L+ FH + DK+I+F D + +
Sbjct: 597 LESQSDGDPFARRGTTRMAHSVVCLNPYKLWCTQALLEFHRNRSPPDKVIIFCDQIDGIQ 656
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
YA L P + G TS +ER +LQ F+ S ++N I LS+VGD ++DIP A+V+IQIS
Sbjct: 657 YYAQHLHVPFMDGKTSDMERENLLQYFQHSDNINAIILSRVGDVALDIPCASVVIQISGL 716
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
SRRQEAQRLGRILR K D + ++FY+LVS DT E+ S +RQ +L DQ
Sbjct: 717 GASRRQEAQRLGRILRPKPASLDNVC-------SYFYTLVSQDTHEISQSYERQSWLRDQ 769
Query: 403 GYSFKVITS 411
G+S++V+ S
Sbjct: 770 GFSYRVLQS 778
>gi|71650415|ref|XP_813906.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi strain CL Brener]
gi|70878833|gb|EAN92055.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma cruzi]
Length = 925
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 177/425 (41%), Positives = 251/425 (59%), Gaps = 30/425 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D ++ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 354 YDYVQDGTLDVRDLALAEHVRLRPYQVASLERFRCGNKAHQGVIVLPCGAGKTLTGIGAA 413
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ SD K+ V +TTY+M+
Sbjct: 414 TILKKRTIVMCINVISVLQWQREFFRWTDLSEDQVTVCISDKKQM---PGDVFITTYSML 470
Query: 125 AFGGKRSEESE---------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
+ E E +I+ + + WGLLL+DEVH AH F++V++ K C +
Sbjct: 471 VAKRPTAPEQEQGEDARLTSRILASVEEQAWGLLLLDEVHAALAHHFQEVLNKVKYKCVV 530
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL- 234
GL+ATL+RED++I DL L+GPKLYEANWL+L + GF+A V+CAEV CP+ FF EYL
Sbjct: 531 GLSATLLREDDKIGDLRHLVGPKLYEANWLELTRAGFLARVECAEVQCPLPLPFFREYLD 590
Query: 235 ---------KKENSKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALTEY 284
++ S +A+ NP K + L+ FH + DK+I+F D+L + Y
Sbjct: 591 SQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALLEFHRNRSPPDKVIIFCDDLEGVQYY 650
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A L P + G T+ VER +LQ F+ S D+N I LS+VGD ++DIP A+VIIQ+S
Sbjct: 651 ARHLNVPFMDGKTTEVERENLLQYFQHSNDINAIILSRVGDVALDIPCASVIIQVSGLGA 710
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQEAQRLGRILR K D ++FY+LVS DT E+ S RQ +L DQG+
Sbjct: 711 SRRQEAQRLGRILRPKPPSLDNTC-------SYFYTLVSQDTHEVQQSYGRQSWLRDQGF 763
Query: 405 SFKVI 409
+++V+
Sbjct: 764 AYRVL 768
>gi|407832348|gb|EKF98418.1| DNA repair helicase [Trypanosoma cruzi]
Length = 925
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 176/425 (41%), Positives = 252/425 (59%), Gaps = 30/425 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D ++ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 354 YDYVQDGALDVRDLVLAEHVRLRPYQVASLERFRCGNKAHQGVIVLPCGAGKTLTGIGAA 413
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ SD K+ V +TTY+M+
Sbjct: 414 TILKKRTIVMCINVISVLQWQREFFRWTDLSEDQVTVCISDKKQM---PGDVFITTYSML 470
Query: 125 AFGGKRSEESE---------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
+ E E +I+ + + WGLLL+DEVH AH F++V++ K C +
Sbjct: 471 VAKRPTAPEQEQGEDARLTSRILASVEEQAWGLLLLDEVHAALAHHFQEVLNKVKYKCVV 530
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL- 234
GL+ATL+RED++I DL L+GPKLYEANWL+L + GF+A V+CAEV CP+ FF+EYL
Sbjct: 531 GLSATLLREDDKIGDLRHLVGPKLYEANWLELTRAGFLARVECAEVQCPLPLPFFTEYLD 590
Query: 235 ---------KKENSKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALTEY 284
++ S +A+ NP K + L+ FH + DK+I+F D+L + Y
Sbjct: 591 SQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALLEFHRNRSPPDKVIIFCDDLEGVQYY 650
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A L P + G T+ VER +LQ F+ S D+N I LS+VGD ++D+P A+VIIQ+S
Sbjct: 651 ARHLNVPFMDGKTTEVERENLLQYFQHSNDINAIILSRVGDVALDVPCASVIIQVSGLGA 710
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQEAQRLGRILR K D ++FY+LVS DT E+ S RQ +L DQG+
Sbjct: 711 SRRQEAQRLGRILRPKPPSLDNTC-------SYFYTLVSQDTHEVQQSYGRQSWLRDQGF 763
Query: 405 SFKVI 409
+++V+
Sbjct: 764 AYRVL 768
>gi|407410785|gb|EKF33098.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi marinkellei]
Length = 737
Score = 332 bits (851), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/425 (41%), Positives = 251/425 (59%), Gaps = 30/425 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D ++ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 166 YDYVQDGALDVRDLVLAEHVRLRPYQVASLERFRCGNKAHQGVIVLPCGAGKTLTGIGAA 225
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ SD K+ V +TTYNM+
Sbjct: 226 TILKKRTIVMCINVLSVLQWQREFFRWTDLSEDQVTVCISDKKQM---PGDVFITTYNML 282
Query: 125 AFGGKRSEESE---------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
+ E E +I+ + + WGLLL+DEVH AH F++V++ K C +
Sbjct: 283 VAKRPTAPEQEQSEDARLTSRILASVEEQAWGLLLLDEVHAALAHHFQEVLNKVKYKCVV 342
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL- 234
GL+ATL+RED++I DL L+GPKLYEANWL+L + GF+A V+CAEV CP+ FF+EYL
Sbjct: 343 GLSATLLREDDKIGDLRHLVGPKLYEANWLELTRAGFLARVECAEVQCPLPLSFFTEYLD 402
Query: 235 ---------KKENSKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALTEY 284
++ S +A+ NP K + L+ FH + DK+I+F D+L + Y
Sbjct: 403 SQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALLEFHRNRSPPDKVIIFCDDLDGVQYY 462
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A L P + G T+ ER +LQ F+ S D+N I LS+VGD ++DIP A+VIIQIS
Sbjct: 463 ARHLNVPFMDGKTTEFERENLLQYFQHSSDINAIILSRVGDVALDIPCASVIIQISGLGA 522
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQEAQRLGRILR K D ++FY+LVS DT E+ S RQ +L DQG+
Sbjct: 523 SRRQEAQRLGRILRPKPPSLDNTC-------SYFYTLVSQDTHEVPQSHGRQSWLRDQGF 575
Query: 405 SFKVI 409
+++V+
Sbjct: 576 AYRVL 580
>gi|342180398|emb|CCC89875.1| putative DNA repair helicase and transcription factor protein
[Trypanosoma congolense IL3000]
Length = 937
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/429 (41%), Positives = 250/429 (58%), Gaps = 34/429 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D +EL + + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 367 YDYLQDQSLHVCGLELSENVRLRPYQVASLERFRSGNKAHQGVIVLPCGAGKTLTGIGAA 426
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + ++Q+ SD K+ V +TTY+M+
Sbjct: 427 ATVKKRTIVMCINVMSVLQWQREFLRWTNLTEEQVTVCISDKKQM---PGDVFITTYSML 483
Query: 125 AFGGKRSEESE-----------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHC 173
KR S+ KI+ + + WGLLL+DEVH AH FR+V++ K C
Sbjct: 484 I--AKRPNVSDQEQSADAKLTSKILASVSEQPWGLLLLDEVHTALAHNFREVLNKVKFKC 541
Query: 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233
+GL+ATL+RED++I DL L+GPKLYEANWLDL + GF+A V+CAEV CP+ + F Y
Sbjct: 542 VVGLSATLLREDDKIGDLRHLVGPKLYEANWLDLTRAGFLARVECAEVQCPLPRPFLVAY 601
Query: 234 L----------KKENSKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALT 282
L ++ S +A+ NP K + L+ FH + DK+I+F D + +
Sbjct: 602 LDNQKQGDLSTRRGTSPMARAVVCYNPYKLWCAQALLEFHRNRSPPDKVIIFCDQIDGVQ 661
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
YA L P + G TS ER +LQ F+ S D+N I LS+VGD ++DIP A+V+IQIS
Sbjct: 662 YYAQHLNVPFMDGRTSDAERANLLQYFQHSSDINAIILSRVGDVALDIPCASVVIQISGL 721
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
SRRQEAQRLGRILR K D +FFY+LVS DT E+ S RQ +L DQ
Sbjct: 722 GASRRQEAQRLGRILRPKPPSLDNSC-------SFFYTLVSQDTHEISQSYSRQSWLRDQ 774
Query: 403 GYSFKVITS 411
G+S++V+ S
Sbjct: 775 GFSYRVLQS 783
>gi|71417712|ref|XP_810636.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi strain CL Brener]
gi|70875197|gb|EAN88785.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma cruzi]
Length = 925
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 177/425 (41%), Positives = 251/425 (59%), Gaps = 30/425 (7%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D ++ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 354 YDYVQDGALDVRDLVLAEHVRLRPYQVASLERFRCGNKAHQGVIVLPCGAGKTLTGIGAA 413
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
+KK + + N +SV QW +F W+ + +DQ+ SD K+ V +TTY+M+
Sbjct: 414 TILKKRTIVMCINVISVLQWQREFFRWTDLSEDQVTVCISDKKQM---PGDVFITTYSML 470
Query: 125 AFGGKRSEESE---------KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
+ E E +I+ + + WGLLL+DEVH AH F++V++ K C +
Sbjct: 471 VAKRPTAPEQEQGEDARLTSRILASVEEQAWGLLLLDEVHAALAHHFQEVLNKVKYKCVV 530
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL- 234
GL+ATL+RED++I DL L+GPKLYEANWL+L + GF+A V+CAEV CP+ FF EYL
Sbjct: 531 GLSATLLREDDKIGDLRHLVGPKLYEANWLELTRAGFLARVECAEVQCPLPLPFFREYLD 590
Query: 235 ---------KKENSKKKQALYVMNPNKFRACEFLIRFHEQQR-GDKIIVFADNLFALTEY 284
++ S +A+ NP K + L+ FH + DK+I+F D+L + Y
Sbjct: 591 SQAEEDPFARRGTSSLARAVVCFNPYKLWCTQALLEFHRNRSPPDKVIIFCDDLEGVQYY 650
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A L P + G T+ VER +LQ F+ S D+N I LS+VGD ++DIP A+VIIQ+S
Sbjct: 651 ARHLNVPFMDGKTTEVERENLLQYFQHSNDINAIILSRVGDVALDIPCASVIIQVSGLGA 710
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQEAQRLGRILR K D ++FY+LVS DT E+ S RQ +L DQG+
Sbjct: 711 SRRQEAQRLGRILRPKPPSLDNTC-------SYFYTLVSQDTHEVQQSYGRQSWLRDQGF 763
Query: 405 SFKVI 409
+++V+
Sbjct: 764 AYRVL 768
>gi|407408839|gb|EKF32113.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi marinkellei]
Length = 778
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 264/457 (57%), Gaps = 52/457 (11%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YD+ D+ ++N+ LK +PRPYQ +++ G RSG IVLPCGAGK+LVG+
Sbjct: 178 QQYDYERDSGIRNINVMLKTQTKPRPYQIDAVNAAATEGSLRSGCIVLPCGAGKTLVGIM 237
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ----DDQ----------------ICRF 102
C++KK L L T +VSV+QW Q +++I+ DD+ I
Sbjct: 238 LLCKVKKPTLILCTGSVSVEQWKNQILEFASIRAHGTDDEMAAAEKHRSTLEGAARIACL 297
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGK-----RSEESEKIIEEIRNRE------------ 145
T K++ +V+TTY+M+ + R+ + + ++ R +
Sbjct: 298 TGKQKDQVTEETDIVLTTYSMLVTAHRAQMRQRAAHASGLTDDRRQKRRRANPKEKLFQP 357
Query: 146 WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL 205
+GLL+MDEVHV+PA +++ +SL + +GLTAT VRED +I DL L+GPKLY+ +W
Sbjct: 358 YGLLIMDEVHVMPAEAYKESLSLVDAKGVVGLTATYVREDAKIRDLFHLVGPKLYDVSWE 417
Query: 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----KKKQALYVM----NPNKFRAC 256
L G++ANV C EV P+T++F EY+++ ++K L VM NPNK
Sbjct: 418 TLASSGYLANVTCIEVLTPLTRQFSLEYMQRSGEDHTLQQRKMPLLVMLAAANPNKMLCV 477
Query: 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLN 316
L+R H KI+VF D+L L EY L P+I G T H ER I F+ + LN
Sbjct: 478 LELVRRHVAD-SSKILVFCDHLVLLREYGNLLNAPVICGQTPHRERLMIFSDFQSTSKLN 536
Query: 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 376
I LS+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K R + GK +A
Sbjct: 537 VICLSRVGDVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKA----RASNGK-MVDA 591
Query: 377 FFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+FY+++STDT EM Y+ R FL+DQGY+ ++I P
Sbjct: 592 WFYTIISTDTLEMAYAAHRTAFLVDQGYTCRIIEFKP 628
>gi|342186621|emb|CCC96108.1| unnamed protein product [Trypanosoma congolense IL3000]
Length = 779
Score = 325 bits (833), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 179/463 (38%), Positives = 262/463 (56%), Gaps = 58/463 (12%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YD+ D ++N+ LK +PRPYQ ++ +G RSG IVLPCGAGK+LVGV
Sbjct: 178 QQYDYERDTTIRNVNIALKAQTKPRPYQIDAVDAATADGSLRSGCIVLPCGAGKTLVGVM 237
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD------------------------- 97
C++KK L L T +SV+QW Q ++++
Sbjct: 238 LLCKVKKPTLILCTGGISVEQWRNQILEFASLSAPSGGEEGSSSTACATSKRARPPAVGA 297
Query: 98 -QICRFTSDSKERFRGNAGVVVTTYNMV-----------------AFGGKRSEESEKIIE 139
+I T K+ + +V+TTYNM+ A G +R++ +
Sbjct: 298 ARISCLTGKQKDEITDDTDIVLTTYNMLVTAHKMQRRQQCSSAGGATGEQRAKTRRPNPK 357
Query: 140 EIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199
E + +GLL+MDEVHV+PA ++++ + S +GLTAT VRED +I DL +L+GPKL
Sbjct: 358 ERLFQPYGLLIMDEVHVMPADVYKESLGYVNSKGVIGLTATYVREDAKIRDLFYLVGPKL 417
Query: 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----KKKQALYVM----NP 250
++ +W L G++ANV C EV P+T++F EY+++ S ++K L VM NP
Sbjct: 418 FDMSWERLASSGYLANVTCVEVLTPLTRQFNLEYMERSGSGFTVQRRKVPLLVMLAAANP 477
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
NK L++ H + KI+VF D++ L EY L P+I G T H ER I F+
Sbjct: 478 NKMLCVAELVQRHIVE-SSKILVFCDHIVLLMEYGKFLGAPVICGDTPHRERLMIFSDFQ 536
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
+ +N I LS+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K K AG
Sbjct: 537 STSKVNVICLSRVGDVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKAK-----AGN 591
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+ +A+FYS++STDT EM ++ +R FL+DQGY+ +V+ P
Sbjct: 592 GKAVDAWFYSVISTDTVEMSFAARRTAFLVDQGYTCRVMEFYP 634
>gi|407848115|gb|EKG03589.1| DNA repair helicase and transcription factor protein [Trypanosoma
cruzi]
Length = 778
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 260/457 (56%), Gaps = 52/457 (11%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YD+ D+ ++N+ LK +PRPYQ +++ G RSG IVLPCGAGK+LVG+
Sbjct: 178 QQYDYERDSGVRNINVMLKTQTKPRPYQIDAVNAAATEGSLRSGCIVLPCGAGKTLVGIM 237
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTI----QDDQ----------------ICRF 102
C++KK L L VSV+QW Q +++I DD+ I
Sbjct: 238 LLCKVKKPTLILCAGGVSVEQWKNQILEFASICAHDTDDEMAAAEKHRSRLEGAARIACL 297
Query: 103 TSDSKERFRGNAGVVVTTYNMV----------------AFGGKRSEESEKI-IEEIRNRE 145
T K+ +V+TTY+M+ G R ++ + +E +
Sbjct: 298 TGKQKDPVTEETDIVLTTYSMLVTAHRAQMRQRAAHASGLAGDRHQKRRRANPKEKLFQP 357
Query: 146 WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL 205
+GLL+MDEVHV+PA +++ +SL + +GLTAT VRED +I DL L+GPKLY+ +W
Sbjct: 358 YGLLIMDEVHVMPAEAYKESLSLVDAKGVVGLTATYVREDAKIQDLFHLVGPKLYDVSWE 417
Query: 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----KKKQALYVM----NPNKFRAC 256
L G++ANV C EV P+T++F EY+++ ++K L VM NPNK
Sbjct: 418 TLASSGYLANVTCIEVLTPLTRQFGLEYMQRSGEDHTLQQRKMPLLVMLAAANPNKMLCV 477
Query: 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLN 316
L+R H KI+VF D+L L EY + L P+I G T H ER I F+ + LN
Sbjct: 478 LELVRRHVAD-SSKILVFCDHLLLLREYGILLHAPVICGQTPHRERLMIFSDFQSTSKLN 536
Query: 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 376
I LS+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K R + GK +A
Sbjct: 537 VICLSRVGDVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKA----RASNGK-MVDA 591
Query: 377 FFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+FY+++STDT EM Y+ R FL+DQGY+ ++I P
Sbjct: 592 WFYTIISTDTLEMAYAAHRTAFLVDQGYTCRIIEFQP 628
>gi|307108852|gb|EFN57091.1| hypothetical protein CHLNCDRAFT_57434 [Chlorella variabilis]
Length = 818
Score = 324 bits (831), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 147/197 (74%), Positives = 168/197 (85%)
Query: 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
A+ RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA RIKK CLCL TN VSVDQ
Sbjct: 464 AKHRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAARIKKGCLCLCTNGVSVDQ 523
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN 143
W +QF++W+ + DQ+CRFTS ++E F G GV +TTY MVAF G+RS E E+I+ +I +
Sbjct: 524 WKYQFEMWTNVPKDQVCRFTSQTREWFEGPTGVCITTYTMVAFTGRRSTEGERIMSQIMS 583
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
REWGLLL+DEVHVVPA MFRKV+ + K+HCKLGLTATLVRED I DLNFLIGPKLYEAN
Sbjct: 584 REWGLLLLDEVHVVPAAMFRKVLGIVKAHCKLGLTATLVREDSLIGDLNFLIGPKLYEAN 643
Query: 204 WLDLVKGGFIANVQCAE 220
WLDL +GG IA+VQCAE
Sbjct: 644 WLDLTRGGHIASVQCAE 660
Score = 108 bits (270), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 82/126 (65%), Gaps = 14/126 (11%)
Query: 368 AGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL-------PPPDSGAD 420
AG EE++AFFY+LV+ DTQE+++S KRQQFLIDQGYS+KVI L P G
Sbjct: 668 AGAGEEFDAFFYTLVTLDTQEVYFSAKRQQFLIDQGYSYKVIPHLLEAAGAEGPDGGGLL 727
Query: 421 LSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA-LHK---ARRIAGSMSAMSGAQG 476
LS H +EQL +L +L+ D + E+ D D DDIA L K RR+ G M+A+SGA G
Sbjct: 728 LSSH--EEQLDVLAAILAVTDADLAEEETD-DKDDIANLGKKSATRRVVGDMAALSGAAG 784
Query: 477 MVYMEY 482
M YMEY
Sbjct: 785 MRYMEY 790
>gi|71415150|ref|XP_809651.1| DNA repair helicase [Trypanosoma cruzi strain CL Brener]
gi|70874067|gb|EAN87800.1| DNA repair helicase, putative [Trypanosoma cruzi]
Length = 778
Score = 324 bits (831), Expect = 7e-86, Method: Compositional matrix adjust.
Identities = 199/534 (37%), Positives = 287/534 (53%), Gaps = 75/534 (14%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YD+ D+ ++N+ LK +PRPYQ +++ G RSG IVLPCGAGK+LVG+
Sbjct: 178 QQYDYERDSGVRNINVMLKTQTKPRPYQIDAVNAAATEGSLRSGCIVLPCGAGKTLVGIM 237
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTI----QDDQ----------------ICRF 102
C++KK L L +VSV+QW Q +++I DD+ I
Sbjct: 238 LLCKVKKPTLILCAGSVSVEQWKNQILEFASICAHDTDDEMAAAEKHRSRLEGAARIACL 297
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGK----------------------RSEESEKIIEE 140
T K+ +V+TTY+M+ + R+ EK+ +
Sbjct: 298 TGKQKDPVTEETDIVLTTYSMLVTAHRAQMRQRAAHASGLADDRHQKRRRANPKEKLFQP 357
Query: 141 IRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLY 200
+GLL+MDEVHV+PA +++ +SL + +GLTAT VRED +I DL L+GPKLY
Sbjct: 358 -----YGLLIMDEVHVMPAEAYKESLSLVDAKGVVGLTATYVREDAKIQDLFHLVGPKLY 412
Query: 201 EANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----KKKQALYVM----NPN 251
+ +W L G++ANV C EV P+T++F EY+++ ++K L VM NPN
Sbjct: 413 DVSWETLASSGYLANVTCIEVLTPLTRQFSLEYMQRSGEDHTLQQRKMPLLVMLAAANPN 472
Query: 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKC 311
K L+R H KI+VF D+L L EY L P+I G T H ER I F+
Sbjct: 473 KMLCVLELVRRHVAD-SSKILVFCDHLLLLREYGTLLHAPVICGQTPHRERLMIFSDFQS 531
Query: 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371
+ LN I LS+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K R + GK
Sbjct: 532 TSKLNVICLSRVGDVSVNLPSANVVIQVSSHGGSRRQEAQRLGRILRPKA----RASNGK 587
Query: 372 EEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLA 431
+A+FY+++STDT EM Y+ R FL+DQGY+ ++I P +LS D+
Sbjct: 588 -MVDAWFYTIISTDTLEMAYAAHRTAFLVDQGYTCRIIEFQPD-----ELSNDETDDV-- 639
Query: 432 LLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYMEYRYD 485
V + DAV L+Q + AL + + S++ G+ +EY+ D
Sbjct: 640 ---AVAAEAGDAVSLKQ---EKLRSALREKKLQCESLTVPQGSVDARKIEYQLD 687
>gi|145525669|ref|XP_001448651.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124416206|emb|CAK81254.1| unnamed protein product [Paramecium tetraurelia]
Length = 708
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 181/460 (39%), Positives = 275/460 (59%), Gaps = 17/460 (3%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+++EYDF + D+N LKP +PR YQ ++ + A+SG+IVLPCGAGK+LVG
Sbjct: 241 LIQEYDFTKEKQKLDIN--LKPSTKPRLYQLRAAKTVIMGDYAKSGLIVLPCGAGKTLVG 298
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV-T 119
V IK S + + + VSV+QW + + ++TI + +I R T +K++++G +V+ T
Sbjct: 299 VLCMSLIKSSTVIICDSNVSVEQWKREIEGYTTIDNRRIIRVTGFAKDKWQGEQPIVILT 358
Query: 120 TYN-MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TY+ ++A S ++ + +I WG+ ++DEVH +PA F+ V+ K K+GLT
Sbjct: 359 TYSWLIAQFRNNSSSTKTVWNQISEVSWGICIVDEVHRLPAVQFQNVLKQIKCAIKIGLT 418
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATL+RED+++ +L F+IGPKLYE N +DL+ GF+A E+ C M F EY K N
Sbjct: 419 ATLLREDQKLDNLYFMIGPKLYEENLIDLMTQGFLAKPHIIEIQCDMPPIFLQEYQTKNN 478
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+Q L+ NP K++A +FLI+ HE G KIIVF D+L L YA+ L P+I G +
Sbjct: 479 MTVRQLLHTGNPGKYKALQFLIKNHE-MLGHKIIVFCDSLLILNYYALLLGYPVIDGDLN 537
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
E+ KI FK S ++ TIF+S+VGD IDIP A+V I+I GSRRQ+ QRLGR++R
Sbjct: 538 TDEKNKIFSIFKNSNEIKTIFVSRVGDTGIDIPSASVGIEIGYLGGSRRQKVQRLGRVMR 597
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ-GYSFKVITS--LPPP 415
K E AFFYSL S DT E YS KRQ+++ +Q G + ++I LP
Sbjct: 598 PK-------QNTNHEIQAFFYSLASKDTTESEYSYKRQKYITEQLGLNTELILEGDLPYN 650
Query: 416 DSGADLSYHRLDEQLALLGKVLSAGDDAVG--LEQLDEDA 453
+ Y + ++ LL +++ + +D ++Q++E+
Sbjct: 651 KNPQKYKYIKQMNEMDLLEQIMLSSNDLTNKVIDQIEEEV 690
>gi|440803695|gb|ELR24578.1| DNA repair helicase rad25 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 560
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 168/411 (40%), Positives = 258/411 (62%), Gaps = 17/411 (4%)
Query: 2 LEEYDFRNDNVN----PDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKS 57
+EE+DF + + +L + LK RPYQ+++ +F + +A S I+VLPCGAGK+
Sbjct: 81 IEEFDFLTNRWSEKACANLAINLKEGTGVRPYQKRAAFSLFWDNKAHSSILVLPCGAGKT 140
Query: 58 LVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--FRGNAG 115
LVG++ + IKK L T+ ++V+QW QF WS I+ +I RF SD++++ + G
Sbjct: 141 LVGITVSSIIKKCILVFCTSMMAVNQWREQFLKWSDIEPSRISRFISDTRKKGEWDHTCG 200
Query: 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175
+++TTYNM KR+E S ++IE+ + R WGL+++DEVH+ PA F++V + ++H KL
Sbjct: 201 LLITTYNMFT-SEKRAEHSTRMIEKCKERTWGLMILDEVHLAPATTFKRVTTEFRAHVKL 259
Query: 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235
GLTAT+VREDE I +L L+GP+L E + L L +ANV C + CP+T F + Y
Sbjct: 260 GLTATMVREDELIAELPTLVGPRLDEVDLLSLKIHNHVANVHCYRIVCPLTSAFGAAYRT 319
Query: 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
+ +K+ L++ NPNK R L++ H +RG K +VF D+LF L ++ L P I G
Sbjct: 320 ARSPAEKRLLHITNPNKARIVFTLLKRH-LRRGHKCLVFCDDLFGLQWFSQVLGSPYIDG 378
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
T + +R K L F+ ++ + +SKVGD+SID+PEANV+IQ+ GSR QEAQRLGR
Sbjct: 379 ETKNEDREKSLNMFRTTKSSAYVLISKVGDHSIDLPEANVVIQVGVVDGSRMQEAQRLGR 438
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSF 406
+ R K G + +A+FY++VS T E+ YS +R++F+ + GY +
Sbjct: 439 VQRKK-------PGA--DVSAYFYTIVSEGTDEVGYSDRRREFMEEHGYLY 480
>gi|444302187|pdb|4ERN|A Chain A, Crystal Structure Of The C-terminal Domain Of Human
Xpb/ercc-3 Excision Repair Protein At 1.80 A
Length = 289
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 170/284 (59%), Positives = 206/284 (72%), Gaps = 22/284 (7%)
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
++L G+IA VQCAEVWCPM+ EF+ EY+ + +KK+ LY MNPNKFRAC+FLI+FHE
Sbjct: 1 MELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TKKRILLYTMNPNKFRACQFLIKFHE 59
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ R DKIIVFADN+FAL EYA++L KP IYG TS ER +ILQ FK + +NTIF+SKVG
Sbjct: 60 R-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVG 118
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
D S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK + EEYNAFFYSLVS
Sbjct: 119 DTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGM------VAEEYNAFFYSLVSQ 172
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAV 444
DTQEM YSTKRQ+FL+DQGYSFKVIT L + DL++ +EQ LL KVL+A D
Sbjct: 173 DTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTKEEQQQLLQKVLAATD--- 228
Query: 445 GLEQLDEDADDIA------LHKARRIAGSMSAMSGAQGMVYMEY 482
LD + + +A +A R G+MS+MSGA VYMEY
Sbjct: 229 ----LDAEEEVVAGEFGSRSSQASRRFGTMSSMSGADDTVYMEY 268
>gi|374533700|gb|AEZ53763.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Spea bombifrons]
Length = 242
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 160/248 (64%), Positives = 191/248 (77%), Gaps = 9/248 (3%)
Query: 194 LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253
LIGPKLYEANW++L G+IA VQCAEVWCPM+ EF+ EY+ + +KK+ LY MNPNKF
Sbjct: 1 LIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIK-TKKRILLYTMNPNKF 59
Query: 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
RAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS ER +ILQ FK +
Sbjct: 60 RACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP 118
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
+NTIF+SKVGD S D+PEANV+IQISSH GSR AQRLGR+LRAK + EE
Sbjct: 119 KINTIFISKVGDTSFDLPEANVLIQISSHGGSRXXXAQRLGRVLRAKKGM------VAEE 172
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALL 433
YNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + DL++ ++Q LL
Sbjct: 173 YNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EDLAFSTREDQQQLL 231
Query: 434 GKVLSAGD 441
KVL+A D
Sbjct: 232 QKVLAASD 239
>gi|353442071|gb|AER00321.1| xeroderma pigmentosum group B, partial [Hydra vulgaris]
Length = 227
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 145/229 (63%), Positives = 183/229 (79%), Gaps = 3/229 (1%)
Query: 53 GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112
GAGK+LVGV+AAC ++K CL L T+ VSV+QW QFKLW+ I D ICRFTSD+K++
Sbjct: 1 GAGKTLVGVTAACTVRKKCLVLCTSGVSVEQWKSQFKLWANIDDKHICRFTSDTKDK-PV 59
Query: 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSH 172
+ + VTTY+M+A KRS ES I++ ++N EWGL+L+DEVH +PA FR+V+++ +H
Sbjct: 60 DCHLAVTTYSMIAHTMKRSYESTLIMDFLKNTEWGLMLLDEVHTIPAKQFRRVLTIVNAH 119
Query: 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSE 232
CKLGLTATLVRED++I DLNFLIGPKLYEANW++L G++A VQCAEVWCPM+ EF+ E
Sbjct: 120 CKLGLTATLVREDDKIQDLNFLIGPKLYEANWMELQNNGYLARVQCAEVWCPMSPEFYRE 179
Query: 233 YLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFAL 281
YL S+K+ YVMNPNKFRACEFLIRFHE +R DKIIVFADN+FAL
Sbjct: 180 YLSIP-SRKRSLFYVMNPNKFRACEFLIRFHE-RRNDKIIVFADNVFAL 226
>gi|207344431|gb|EDZ71579.1| YIL143Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 297
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/282 (57%), Positives = 204/282 (72%), Gaps = 20/282 (7%)
Query: 211 GFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDK 270
G IANVQCAEVWCPMT EF+ EYL+ E ++K+ LY+MNP KF+AC+FLI++HE+ RGDK
Sbjct: 1 GHIANVQCAEVWCPMTAEFYQEYLR-ETARKRMLLYIMNPTKFQACQFLIQYHER-RGDK 58
Query: 271 IIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330
IIVF+DN++AL EYA+K+ KP IYG+T ER ILQ F+ + +NTIFLSKVGD SID+
Sbjct: 59 IIVFSDNVYALQEYALKMGKPFIYGSTPQQERMNILQNFQYNDQINTIFLSKVGDTSIDL 118
Query: 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390
PEA +IQISSH GSRRQEAQRLGRILRAK + E +NAFFYSLVS DTQEM+
Sbjct: 119 PEATCLIQISSHYGSRRQEAQRLGRILRAKRR-------NDEGFNAFFYSLVSKDTQEMY 171
Query: 391 YSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLD 450
YSTKRQ FL+DQGY+FKVIT L ++ +L+Y E+ LL +VL ++A G+E +
Sbjct: 172 YSTKRQAFLVDQGYAFKVITHLHGMENIPNLAYASPRERRELLQEVLLKNEEAAGIE-VG 230
Query: 451 EDADDIA----------LHKARRIAGSMSAMSGAQGMVYMEY 482
+DAD+ KA R GS+S ++G + M YMEY
Sbjct: 231 DDADNSVGRGSNGHKRFKSKAVRGEGSLSGLAGGEDMAYMEY 272
>gi|407044253|gb|EKE42473.1| DNA repair helicase, putative [Entamoeba nuttalli P19]
Length = 589
Score = 308 bits (790), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 169/422 (40%), Positives = 261/422 (61%), Gaps = 29/422 (6%)
Query: 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79
LK R YQ +S +F G A+SGII+LPCGAGK+L+ + C ++ + + T +
Sbjct: 181 LKDDTVLRKYQISGISSVFRKGFAQSGIIILPCGAGKTLMTIGIICTFQQPTIIICTTTI 240
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIE 139
S++QW + + WSTI ++I F+S KE + +V+TTY M+ +S+E IE
Sbjct: 241 SIEQWRDEIRKWSTIPLNKIKCFSSIIKETIE-ESYIVITTYQMI-----QSKE----IE 290
Query: 140 EIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199
EIR +++G++++DEVH A FRK+ L ++ C++G+TAT +RED +I DL++LIGP L
Sbjct: 291 EIRKKKYGMMILDEVHSSVAKEFRKIYYLIEARCRIGITATPIREDFKIKDLDYLIGPIL 350
Query: 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259
Y+ +W +L+K +IANVQC ++ CPMT F+ EY+ N + K L +NPNK +FL
Sbjct: 351 YQESWKELIKEKYIANVQCIDIKCPMTIPFYEEYINNSNYRHKIILSALNPNKIEVTKFL 410
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
I+ H +R ++II+F D++ L E ++ P+ +G + + ER IL FK +D+N I
Sbjct: 411 IKQH-LKRNEQIILFCDSIIVLKEIGYQINCPIFFGESPNKERLDILNKFKL-KDINCIG 468
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+S VGD S+DIP+A+VIIQIS++ GSR+Q+ QRLGRI R K K E +FY
Sbjct: 469 MSSVGDTSLDIPDASVIIQISTNNGSRKQQLQRLGRISRIK----------KNEGIGYFY 518
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSA 439
+L S DT E ++ KRQ ++ + G+ F+ I S L++ +EQL L+ +L+
Sbjct: 519 TLTSIDTHEEYFIHKRQIYMQNLGFGFECINS-------TILTHMNTNEQLNLIKYILNE 571
Query: 440 GD 441
D
Sbjct: 572 SD 573
>gi|384500729|gb|EIE91220.1| hypothetical protein RO3G_15931 [Rhizopus delemar RA 99-880]
Length = 619
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 170/445 (38%), Positives = 263/445 (59%), Gaps = 41/445 (9%)
Query: 16 LNMELKPHAQPRPYQEKSLS----KMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71
L+++L+P + RPYQ+++L K ARSGIIVLPCGAGK+L + A IKK
Sbjct: 75 LDIDLRPEIEVRPYQQEALDAIVDKTCDPPVARSGIIVLPCGAGKTLTSILVAAAIKKPI 134
Query: 72 LCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRS 131
L + + ++ +Q++ +F ++ + + F K F G +GV+ TTY M+ R+
Sbjct: 135 LVVCSTIIAAEQFSKEFLRFTNLMASKTGMFAGAKKWPFNGPSGVLFTTYTMLVDSKNRT 194
Query: 132 EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDL 191
+S+++ I EWGL+++DEVH VPA+ F K IS K+ +LGLTAT++REDE+I DL
Sbjct: 195 ADSKRMSTFIDKTEWGLVILDEVHCVPANNFSKAISKIKTKVRLGLTATMLREDEKIGDL 254
Query: 192 NFLIGPKLYEANWLDLVKGGFIANVQCAEVWC---PMTKEFFSEY----LKKENSKKKQA 244
+ L+GP LY A W +L G+IA V C +V P+T+ + L + K
Sbjct: 255 DTLVGPTLYHAKWKELADKGYIAKVVCTQVESDMNPITQGAYDSVQTGNLLGQGHHLKSL 314
Query: 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTK 304
L +++P K + C+ LI++HE RGDK++V+ D++ AL YA + +P+IYG T E +
Sbjct: 315 LAILHPKKIQICQRLIQYHE-ARGDKVLVYCDHIDALKLYAQHIGRPLIYGGTPTEEARQ 373
Query: 305 ILQAFKC---------------------SRDLNTIFLSKVGDNSIDIPEANVIIQISSHA 343
+L F+ ++ +NT+FLS++GD S+D+P A V+IQ+SSH
Sbjct: 374 LLARFQIDVQDTDEELTWNQMATRRSLKAKQINTLFLSRIGDTSLDLPAATVLIQVSSHF 433
Query: 344 GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL-IDQ 402
GSRRQEAQRLGR+LRAK + E + + + FY+LV+ +T E+ +S KR+QFL D
Sbjct: 434 GSRRQEAQRLGRVLRAKKRNE-------KGFYSRFYTLVTNNTHEVQFSEKRRQFLEEDC 486
Query: 403 GYSFKVITSLPPPDSGADLSYHRLD 427
GY +++ + G ++ HR D
Sbjct: 487 GYGYQIWKVGNEKEGGWEVETHRDD 511
>gi|401416016|ref|XP_003872503.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488727|emb|CBZ23974.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 1103
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 174/470 (37%), Positives = 257/470 (54%), Gaps = 75/470 (15%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D N+ L H + RPYQ SL + +A G++VLPCGAGK+L G+ AA
Sbjct: 458 YDYMQDRTLHVPNLHLASHVRLRPYQVASLERFRRGQKAHQGVVVLPCGAGKTLTGIGAA 517
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
++ + + + N +SV QW +F W+ + +D++ T+ K+R V +TTY+MV
Sbjct: 518 ATMQTTTIVMCINNMSVFQWQREFLRWTDLAEDEVTVCTAKVKQR---PGKVFITTYSMV 574
Query: 125 AF-----GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
G +EES I++ + + WGLLL+DEVH AH F+ V++ K C LGL+A
Sbjct: 575 VAKRGNADGAAAEESRAILQAMTAQPWGLLLLDEVHTALAHHFQDVLNTIKYKCVLGLSA 634
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY------ 233
TL+RED++I DL L+GPKLYEANWLDL + GF+ANV+CAEV CPM F EY
Sbjct: 635 TLLREDDKIGDLRHLVGPKLYEANWLDLTRAGFLANVECAEVQCPMPPLFLEEYHAIQRT 694
Query: 234 -----------LKKENSKKK---------------------------------------- 242
++ N K++
Sbjct: 695 RALLGAHARCNHRRGNGKRRRESVFQDDEDASEDGDGNGEDNGAYGRRGRGHDSCGPLTS 754
Query: 243 QALYVMNPNKFR--ACEFLIRFHEQQR-GDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299
++L + + N ++ + L+ FH+Q+ DK+I+F D L + +A L P + TS
Sbjct: 755 RSLRLASCNPYKLWCTQALLAFHQQRSPPDKVIIFCDYLSDVRFFAHHLHLPFMDQRTSE 814
Query: 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
ERT +LQ F+ S +N I L++VGD ++D+P A+V+IQ+S SRRQEAQRLGRILR
Sbjct: 815 AERTNLLQYFQHSSGVNAIILTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRILRP 874
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
K D A+FY+LVS DT ++ S KRQ +L DQG++++++
Sbjct: 875 KPLSLDNTC-------AYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 917
>gi|67479133|ref|XP_654948.1| DNA repair helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472042|gb|EAL49560.1| DNA repair helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449703271|gb|EMD43753.1| rad25/xpB DNA repair helicase, putative [Entamoeba histolytica
KU27]
Length = 589
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 167/422 (39%), Positives = 261/422 (61%), Gaps = 29/422 (6%)
Query: 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79
LK R YQ +S +F G A+SGII+LPCGAGK+L+ + C ++ + + T +
Sbjct: 181 LKDDTVLRKYQISGISSVFRKGFAQSGIIILPCGAGKTLMTIGIICTFQQPTIIICTTTI 240
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIE 139
S++QW + + WSTI ++I F+S KE + +V+TTY M+ +S+E IE
Sbjct: 241 SIEQWRDEIRKWSTIPLNKIKCFSSIIKETIE-ESYIVITTYQMI-----QSKE----IE 290
Query: 140 EIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199
EIR +++G++++DEVH A FRK+ L ++ C++G+TAT +RED +I DL++LIGP L
Sbjct: 291 EIRKKKYGMMILDEVHSSVAKEFRKIYYLIEARCRIGITATPIREDCKIKDLDYLIGPIL 350
Query: 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259
Y+ +W +L+K +IANVQC ++ CPMT F+ EY+ N + K L +NPNK +FL
Sbjct: 351 YQESWKELIKEKYIANVQCIDIKCPMTIPFYEEYINNSNYRHKIILSALNPNKIEVTKFL 410
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
I+ H +R ++II+F D++ L E ++ P+ +G + + ER IL FK +D+N I
Sbjct: 411 IKQH-LKRNEQIILFCDSIIVLKEIGYQINCPIFFGESPNKERLDILNKFKL-KDINCIG 468
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+S VGD S+DIP+A+VIIQIS++ GSR+Q+ QRLGRI R K K E +FY
Sbjct: 469 MSSVGDTSLDIPDASVIIQISTNNGSRKQQLQRLGRISRIK----------KNERIGYFY 518
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSA 439
+L S DT E ++ K+Q ++ + G+ F+ I S +++ +EQL L+ +L+
Sbjct: 519 TLTSIDTHEEYFIHKKQIYMQNLGFGFECINS-------TIITHMNTNEQLNLIKYILNE 571
Query: 440 GD 441
D
Sbjct: 572 SD 573
>gi|154343637|ref|XP_001567764.1| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065096|emb|CAM43210.1| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 803
Score = 304 bits (779), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 189/497 (38%), Positives = 274/497 (55%), Gaps = 63/497 (12%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YDF ND ++ L+ +PR YQ +++ +G SG I+LPCGAGK+L+G+
Sbjct: 196 QQYDFENDTSVRKAHISLRTQTKPRRYQIEAVDAAIHDGTLNSGCILLPCGAGKTLLGIM 255
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ-------DD-----------------Q 98
C++KK L + +VSV+QW Q ++T++ DD +
Sbjct: 256 LMCKVKKPTLVVCAGSVSVEQWRSQILDYATLEAPPPTDNDDAADTQGGCSHQIKSGATR 315
Query: 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGK---RSEESEKIIEE-------IRNRE--- 145
I T K+ VV+TTY+M+ K R + E+ +R R+
Sbjct: 316 IACLTGKQKDPITEETDVVLTTYSMLVTAHKAKLRQHATTTAGEDDLFTGRGLRKRKENP 375
Query: 146 -------WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+GLL++DEVHV+PA FR + + +GLTAT VRED +I DL L+GPK
Sbjct: 376 KEKLFAPYGLLILDEVHVMPAESFRGSLGFIDAKGIVGLTATYVREDHKILDLFHLVGPK 435
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL---KKENSKKKQALYVM----NPN 251
LY+ + L G++ANV C EV PMTKEF EY+ ++ K ++ VM NPN
Sbjct: 436 LYDISMEALASQGYLANVHCVEVRTPMTKEFGLEYMDHRRRAAGTSKTSVLVMLAAANPN 495
Query: 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKC 311
K L+ H G KI+V D++ L EY L P+I G+T H ER I F+
Sbjct: 496 KMMCVRELVWQH-LDVGAKILVCCDHIMLLKEYGELLNAPVICGSTQHKERLMIFSDFQS 554
Query: 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371
+ +N I +S+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K +R A G+
Sbjct: 555 TSKINVICVSRVGDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPK----ERAANGR 610
Query: 372 EEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLA 431
+A+FYS++S DT EM Y+ R FL+DQGY+ +V+ + P +S A+ S R+ +QLA
Sbjct: 611 -AVDAWFYSIISMDTIEMNYAAHRTAFLVDQGYACRVMEYI-PFESSANTSLGRM-KQLA 667
Query: 432 LLGKVLSAGDDAVGLEQ 448
+V DAV ++Q
Sbjct: 668 KKERV----GDAVSIKQ 680
>gi|398021308|ref|XP_003863817.1| helicase, putative [Leishmania donovani]
gi|322502050|emb|CBZ37134.1| helicase, putative [Leishmania donovani]
Length = 806
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/463 (38%), Positives = 255/463 (55%), Gaps = 59/463 (12%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YDF ND ++ L+ H +PR YQ +++ +G SG ++LPCGAGK+L+G+
Sbjct: 196 QQYDFENDTSVRTAHISLRTHTKPRRYQIEAVDAAIHDGTLNSGCLLLPCGAGKTLLGIM 255
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ-----DD-------------------Q 98
C++KK L + +VSV+QW Q ++T++ DD +
Sbjct: 256 LMCKVKKPTLVVCAGSVSVEQWKSQILDYATLEAPPPTDDGDAANAHSGRSHQIKNGAAR 315
Query: 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGK---RSEESEKIIEE-------IRNRE--- 145
I T K+ VV+TTY+M+ K R + + E+ +R R+
Sbjct: 316 IACLTGKQKDPITEETDVVLTTYSMLVTAHKAKMRQQATTTSSEDGLFTERGLRKRKENP 375
Query: 146 -------WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+GLL++DEVHV+PA FR + + +GLTAT VRED +I DL L+GPK
Sbjct: 376 KEKLFAPYGLLILDEVHVMPAESFRGSLGFVDAKGVIGLTATYVREDHKILDLFHLVGPK 435
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA--------LYVMNP 250
LY+ + L G++A V C EV PMTKEF EY+ + +SK +A L NP
Sbjct: 436 LYDISMETLASQGYLAKVHCVEVRTPMTKEFGLEYMHR-SSKTARARTAPVLVMLAAANP 494
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
NK L+R H G KI++ D++ L EY L P+I G T H ER I F+
Sbjct: 495 NKMMCVRELVRQHLDA-GAKILLCCDHITLLKEYGELLNAPVICGTTQHKERLMIFSDFQ 553
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
+ +N I +S+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K +R A G
Sbjct: 554 STSKINVICVSRVGDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPK----ERAANG 609
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+ +A+FYS++S DT EM Y+ R FL+DQGY+ +V+ P
Sbjct: 610 R-TVDAWFYSIISIDTVEMNYAAHRTAFLVDQGYTCRVMEYNP 651
>gi|157874471|ref|XP_001685718.1| putative DNA repair helicase [Leishmania major strain Friedlin]
gi|68128790|emb|CAJ08923.1| putative DNA repair helicase [Leishmania major strain Friedlin]
Length = 806
Score = 301 bits (771), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 175/463 (37%), Positives = 257/463 (55%), Gaps = 59/463 (12%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YDF ND ++ L+ +PR YQ +++ +G SG ++LPCGAGK+L+G+
Sbjct: 196 QQYDFENDTSVRTAHISLRTQTKPRRYQIEAVDAAIHDGTLNSGCLLLPCGAGKTLLGIM 255
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ-----DD-------------------Q 98
C++KK L L +VSV+QW Q ++T++ DD +
Sbjct: 256 LMCKVKKPTLVLCAGSVSVEQWKSQILDYATLETPPRTDDGDASDAHGGRPHQIKDGAAR 315
Query: 99 ICRFTSDSKERFRGNAGVVVTTYNMV--AFGGKRSEESEKIIEE--------IRNRE--- 145
I T K+ VV+TTY+M+ A K +++ E +R R+
Sbjct: 316 IACLTGKQKDPITEETDVVLTTYSMLVTAHRAKMRQQATTTSSEDGLFTGRGLRKRKENP 375
Query: 146 -------WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+GLL++DEVHV+PA FR + + +GLTAT VRED +I DL L+GPK
Sbjct: 376 KEKLFAPYGLLILDEVHVMPAESFRGSLGFVDAKGVIGLTATYVREDHKILDLFHLVGPK 435
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA--------LYVMNP 250
LY+ + L G++A V C EV PMTKEF EY+++ +SK +A L NP
Sbjct: 436 LYDISMETLASQGYLAKVHCVEVRTPMTKEFGLEYMQR-SSKVARAGTAPVLVMLAAANP 494
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
NK L+R H G KI++ D++ L EY L P+I G+T H ER I F+
Sbjct: 495 NKMMCVRELVRQHLDA-GAKILLCCDHIMLLKEYGELLNAPVICGSTQHKERLMIFSDFQ 553
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
+ +N I +S+VGD S+++P AN++IQ+SSH GSRRQEAQRLGRILR K +R A G
Sbjct: 554 STSKINVICVSRVGDVSVNLPNANIVIQVSSHGGSRRQEAQRLGRILRPK----ERAANG 609
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+ +A+FYS++STDT E+ Y+ R FL+DQGY+ +++ P
Sbjct: 610 R-TVDAWFYSIISTDTVEINYAAHRTAFLVDQGYTCRIMEYSP 651
>gi|146097223|ref|XP_001468079.1| putative DNA repair helicase [Leishmania infantum JPCM5]
gi|134072445|emb|CAM71155.1| putative DNA repair helicase [Leishmania infantum JPCM5]
Length = 806
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 176/463 (38%), Positives = 254/463 (54%), Gaps = 59/463 (12%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YDF ND ++ L+ +PR YQ +++ +G SG ++LPCGAGK+L+G+
Sbjct: 196 QQYDFENDTSVRTAHISLRTQTKPRRYQIEAVDAAIHDGTLNSGCLLLPCGAGKTLLGIM 255
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ-----DD-------------------Q 98
C++KK L + +VSV+QW Q ++T++ DD +
Sbjct: 256 LMCKVKKPTLVVCAGSVSVEQWKSQILDYATLEAPPPTDDGDAANAHSGRSHQIKNGAAR 315
Query: 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGK---RSEESEKIIEE-------IRNRE--- 145
I T K+ VV+TTY+M+ K R + + E+ +R R+
Sbjct: 316 IACLTGKQKDPITEETDVVLTTYSMLVTAHKAKMRQQATTTSSEDGLFTERGLRKRKENP 375
Query: 146 -------WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+GLL++DEVHV+PA FR + + +GLTAT VRED +I DL L+GPK
Sbjct: 376 KEKLFAPYGLLILDEVHVMPAESFRGSLGFVDAKGVIGLTATYVREDHKILDLFHLVGPK 435
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA--------LYVMNP 250
LY+ + L G++A V C EV PMTKEF EY+ + +SK +A L NP
Sbjct: 436 LYDISMETLASQGYLAKVHCVEVRTPMTKEFGLEYMHR-SSKTARARTAPVLVMLAAANP 494
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
NK L+R H G KI++ D++ L EY L P+I G T H ER I F+
Sbjct: 495 NKMMCVRELVRQHLDA-GAKILLCCDHITLLKEYGELLNAPVICGTTQHKERLMIFSDFQ 553
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
+ +N I +S+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K +R A G
Sbjct: 554 STSKINVICVSRVGDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPK----ERAANG 609
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+ +A+FYS++S DT EM Y+ R FL+DQGY+ +V+ P
Sbjct: 610 R-TVDAWFYSIISIDTVEMNYAAHRTAFLVDQGYTCRVMEYNP 651
>gi|167386165|ref|XP_001733392.1| rad25/xp-B DNA repair helicase [Entamoeba dispar SAW760]
gi|165899480|gb|EDR26066.1| rad25/xp-B DNA repair helicase, putative [Entamoeba dispar SAW760]
Length = 624
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 166/456 (36%), Positives = 261/456 (57%), Gaps = 58/456 (12%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
+N+ LK R YQ K ++ +F G A+SGII+LPCG+GK+L+ + C+ ++ + +
Sbjct: 180 INISLKDDTVLRTYQIKGINSVFKKGFAQSGIIILPCGSGKTLMSIGIICKFQEPTIIIC 239
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG-------------------- 115
T +S++QW + + W+ I ++I F+S KE
Sbjct: 240 TTTISIEQWRDEIRKWTNIPLNKIKCFSSIIKEEIXXXXXXXXXXXXXXXXXXXXXXXXX 299
Query: 116 ----------VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165
+++TTY M+ +S+E IEEI + +G++++DEVH A FRK+
Sbjct: 300 XXXXXXXXXYIIITTYQMI-----QSKE----IEEINKKRYGMMILDEVHSSVAKEFRKI 350
Query: 166 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM 225
L ++ CK+G+TAT +RED +I DL++LIGP LY+ NW DL+K +IA VQC E+ CPM
Sbjct: 351 YYLIETRCKIGITATPIREDYKIKDLDYLIGPILYQENWKDLIKEKYIAKVQCIEIKCPM 410
Query: 226 TKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYA 285
T F+ EY+ + K L +NPNK +FLI+ H +R ++II+F D++ L E +
Sbjct: 411 TIPFYEEYINNSKYRHKIILTALNPNKIEVIKFLIKEH-LKRKEQIIIFCDSIIVLKEIS 469
Query: 286 MKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGS 345
++ P+ +G + + ER IL FK +++N I +S VGD SIDIP+A+VIIQIS++ GS
Sbjct: 470 YQINCPIFFGESPNKERIDILNKFKL-KEINYIGMSSVGDTSIDIPDASVIIQISTNNGS 528
Query: 346 RRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYS 405
R+Q+ QRLGRI R K K E +FY+L S DT E ++ KRQ ++ + G+
Sbjct: 529 RKQQLQRLGRISRIK----------KNEGIGYFYTLTSIDTHEEYFIYKRQIYMENLGFE 578
Query: 406 FKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGD 441
F+ I S ++ ++EQL L+ +L+ D
Sbjct: 579 FENIIS-------KLITNMNINEQLNLIKYILNESD 607
>gi|401427509|ref|XP_003878238.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322494485|emb|CBZ29787.1| putative DNA repair helicase [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 806
Score = 293 bits (750), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 173/462 (37%), Positives = 253/462 (54%), Gaps = 57/462 (12%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YDF D ++ L+ +PR YQ +++ +G SG ++LPCGAGK+L+G+
Sbjct: 196 QQYDFEKDTSVRTAHISLRTQTKPRRYQIEAVDAAIHDGTLNSGCLLLPCGAGKTLLGIM 255
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ-----DD-------------------Q 98
C++KK L + VSV+QW Q ++ ++ DD +
Sbjct: 256 LMCKVKKPTLVVCAGGVSVEQWKSQILDYAVLEAPPPTDDGDAADAHGGRPHQIKNGAAR 315
Query: 99 ICRFTSDSKERFRGNAGVVVTTYNMV--AFGGKRSEESEKIIEE--------IRNRE--- 145
I T K+ VV+TTY+M+ A K +++ I E +R R+
Sbjct: 316 IACLTGKQKDPITEETDVVLTTYSMLVTAHKAKMRQQATAISSEDGLFTGRGLRKRKENP 375
Query: 146 -------WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+GLL++DEVHV+PA FR+ + + +GLTAT VRED +I DL L+GPK
Sbjct: 376 KEKLFAPYGLLILDEVHVMPAESFRESLGFVDAKGVVGLTATYVREDHKILDLFHLVGPK 435
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL----KKENSKKKQALYVM---NPN 251
LY+ + L G+++ V C EV PMTKEF EY+ K + K AL ++ NPN
Sbjct: 436 LYDISMETLASQGYLSKVHCVEVRTPMTKEFGLEYMDRSSKAARAGKAPALVMLAAANPN 495
Query: 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKC 311
K L+ H G KI++ D++ L EY L P+I G+T H ER I F+
Sbjct: 496 KMMCVRELVWQH-LDAGAKILLCCDHIMLLKEYGELLNAPVICGSTQHKERLMIFSDFQS 554
Query: 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371
+ +N I +S+VGD S+++P ANV+IQ+SSH GSRRQEAQRLGRILR K +R A G+
Sbjct: 555 TSKINVICVSRVGDVSVNLPNANVVIQVSSHGGSRRQEAQRLGRILRPK----ERAANGR 610
Query: 372 EEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+A+FYS++S DT EM Y+ R FL+DQGY+ +V+ P
Sbjct: 611 -TVDAWFYSIISMDTVEMNYAAHRTAFLVDQGYACRVMEYNP 651
>gi|440295401|gb|ELP88314.1| rad25/xp-B DNA repair helicase, putative [Entamoeba invadens IP1]
Length = 605
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 153/386 (39%), Positives = 235/386 (60%), Gaps = 22/386 (5%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++S +F N R + GIIVLPCGAGK+L+ ++ C +++ + + T+ SV+QW
Sbjct: 197 RDYQVSAISSVFENNRVKCGIIVLPCGAGKTLLSIALICGMQQMSIIICTSIASVEQWRD 256
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + WST+ ++I FTS KE G VV+TTY M+ K IE++ +
Sbjct: 257 EIRKWSTVPFNKIKCFTSSVKEPLDG-CYVVLTTYQMM---------QSKEIEQVTRYLY 306
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
G++++DEVH A+ F++V S S C++GLTAT VRED +I +L+FL GP LY+ +W
Sbjct: 307 GMMILDEVHASVANEFKEVYSKINSRCRIGLTATFVREDSKIGELDFLTGPLLYQQSWTK 366
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L+K GF+A V C EV C MT+ F+ Y+ ++ + + NP K +FL+++H +
Sbjct: 367 LIKDGFLAQVHCFEVVCNMTQVFYERYVNEDEYRHRALASAANPTKIATVQFLVKYH-KN 425
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R ++II+F DN+ L E A ++ P+ G T + R +L+ FK + I +S VGD
Sbjct: 426 RKEQIIIFCDNIVVLREIASRVGCPVFSGETPNKSRFDLLKNFK-NGLTPCIAMSSVGDT 484
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+DIP+A VIIQ+ + GSRRQ+ QRLGRI R K + + AFFYSL S DT
Sbjct: 485 SLDIPDATVIIQMCTSHGSRRQQLQRLGRISRVK----------QNKGEAFFYSLTSKDT 534
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSL 412
E ++ KRQ+++ + G+ F++I +L
Sbjct: 535 HEEYFVRKRQEYMQNLGFGFQIIDNL 560
>gi|74026236|ref|XP_829684.1| DNA repair helicase and transcription factor protein [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|70835070|gb|EAN80572.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei brucei strain 927/4 GUTat10.1]
Length = 777
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 249/461 (54%), Gaps = 66/461 (14%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++Y++ D ++N+ LK +PRPYQ ++ +G RSG IVLPCG+GK+LVG+
Sbjct: 178 QQYEYEKDTSIRNVNIALKSQTRPRPYQIAAVDAAASDGALRSGCIVLPCGSGKTLVGIM 237
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTI-------QDD------------------ 97
C++KK L L VSV+QW Q ++++ + D
Sbjct: 238 LLCKVKKPTLILCAGGVSVEQWRNQILEFASVCAPANNEEGDPSNSTTGEKVRTAAVGAA 297
Query: 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGK----------------------RSEESE 135
+I T K+ +V+TTY+M+ K R+ E
Sbjct: 298 RISCLTGKQKDEITDETDIVLTTYSMLVTAHKAQARCQVEGFEMNADGRGRNPRRANPKE 357
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
++ + +GLL+MDEVH++PA ++ + + +GLTAT VRED +I DL L+
Sbjct: 358 RLFQP-----YGLLIMDEVHMMPADAYKDSLGFINAKGVVGLTATYVREDSKIRDLFHLV 412
Query: 196 GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN----SKKKQALYVM--- 248
GPKL++ +W L G++A+V C EV P+ + F EYL++ + + L VM
Sbjct: 413 GPKLFDISWERLASSGYLAHVTCIEVLTPLARRFSLEYLERSSELTSPQHGTPLLVMLAA 472
Query: 249 -NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
NPNK +++ H + KI+VF D++ L EY+ L P++ G T H ER I
Sbjct: 473 ANPNKMLCVMEIVKRHVAE-SSKILVFCDHIMLLKEYSKLLGAPVVCGDTPHRERLMIFS 531
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367
F+ + +N + LS+VGD S+++P ANV++Q+SSH GSRRQEAQRLGRILR K K
Sbjct: 532 DFQSTSKVNVVCLSRVGDVSVNLPSANVVVQVSSHGGSRRQEAQRLGRILRPKEK----- 586
Query: 368 AGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
A + +A+FY+++STDT EM Y+ R FL+DQGY+ V
Sbjct: 587 ASNGKPTDAWFYTVISTDTVEMSYAAHRTAFLVDQGYTCSV 627
>gi|261335713|emb|CBH18707.1| DNA repair helicase and transcription factor protein, putative
[Trypanosoma brucei gambiense DAL972]
Length = 777
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 164/461 (35%), Positives = 249/461 (54%), Gaps = 66/461 (14%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++Y++ D ++N+ LK +PRPYQ ++ +G RSG IVLPCG+GK+LVG+
Sbjct: 178 QQYEYEKDTSIRNVNIALKSQTRPRPYQIAAVDAAASDGALRSGCIVLPCGSGKTLVGIM 237
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTI-------QDD------------------ 97
C++KK L L VSV+QW Q ++++ + D
Sbjct: 238 LLCKVKKPTLILCAGGVSVEQWRNQILEFASVCPPANNEEGDPSNSTTGEKVRTAAVGAA 297
Query: 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGK----------------------RSEESE 135
+I T K+ +V+TTY+M+ K R+ E
Sbjct: 298 RISCLTGKQKDEITDETDIVLTTYSMLVTAHKAQARCQVEGFEMNADGRGRNPRRANPKE 357
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
++ + +GLL+MDEVH++PA ++ + + +GLTAT VRED +I DL L+
Sbjct: 358 RLFQP-----YGLLIMDEVHMMPADAYKDSLGFINAKGVVGLTATYVREDSKIRDLFHLV 412
Query: 196 GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN----SKKKQALYVM--- 248
GPKL++ +W L G++A+V C EV P+ + F EYL++ + + L VM
Sbjct: 413 GPKLFDISWERLASSGYLAHVTCIEVLTPLARRFSLEYLERSSELTSPQHGTPLLVMLAA 472
Query: 249 -NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
NPNK +++ H + KI+VF D++ L EY+ L P++ G T H ER I
Sbjct: 473 ANPNKMLCVMEIVKRHVAE-SSKILVFCDHIMLLKEYSKLLGAPVVCGDTPHRERLMIFS 531
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367
F+ + +N + LS+VGD S+++P ANV++Q+SSH GSRRQEAQRLGRILR K K
Sbjct: 532 DFQSTSKVNVVCLSRVGDVSVNLPSANVVVQVSSHGGSRRQEAQRLGRILRPKEK----- 586
Query: 368 AGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
A + +A+FY+++STDT EM Y+ R FL+DQGY+ V
Sbjct: 587 ASNGKPTDAWFYTVISTDTVEMSYAAHRTAFLVDQGYTCSV 627
>gi|253745292|gb|EET01319.1| DNA repair helicase TFIIH P90 [Giardia intestinalis ATCC 50581]
Length = 765
Score = 281 bits (718), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 246/439 (56%), Gaps = 58/439 (13%)
Query: 14 PDLNMELKPHAQPRPYQEKSLSKMFGN---------GRARSGIIVLPCGAGKSLVGVSAA 64
P +N +LKP R YQ+ + K+ R SG++VLPCGAGKSL+GV+ A
Sbjct: 295 PQINAQLKPTTDLRDYQDHASKKVISEVQLDTSQIVKRCNSGLVVLPCGAGKSLLGVACA 354
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---FRGNAGVVVTTY 121
CR+ SC+ + +S QW QF +STI+ D++ F+++ E G V ++TY
Sbjct: 355 CRLGYSCIVVTNGNLSSKQWKSQFLQFSTIESDRVYIFSANKDEETEFIPGYHIVFISTY 414
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS----------LTKS 171
M+ +S +S++ + ++ + WG++L DE H V A +R + +S
Sbjct: 415 QMLT--NAKSAKSKETLNKVHSLMWGIVLFDEAHQVMAETYRTLFVTDNVNAKANLFLRS 472
Query: 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231
+CK+GLTAT +RED+ +T+L +L+G KLYE+NW DL K GFIA +QCAE+ CPM F+
Sbjct: 473 YCKIGLTATPLREDDEMTNL-YLLGNKLYESNWSDLAKRGFIAKLQCAEIRCPMHHIFYD 531
Query: 232 EYLKKENSKKK--------------------QALYVMNPNKFRACEFLIRFHEQQRGDKI 271
++L + ++ + L ++NP K + +L +H +RGD++
Sbjct: 532 DWLDQHTAQAANQDRATVCVNDVMITRKTYMKYLTILNPYKVQTAWYLKEYH-TRRGDQV 590
Query: 272 IVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331
++F D + A YA P I GA S ER ++ AF +R ++ + LS VGD S+D+P
Sbjct: 591 LLFCDTIMAAKMYARMFDVPFIMGACSDDERECLVNAF-ATRTISCLMLSSVGDTSLDLP 649
Query: 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391
+ANVII++ SRRQEAQR+GRI R K + NA+FY LVS DT E +
Sbjct: 650 DANVIIELDWQERSRRQEAQRMGRISRPKSG----------DQNAYFYILVSEDTNEQYT 699
Query: 392 STKRQQFL-IDQGYSFKVI 409
+ +R+ +L +QGY + ++
Sbjct: 700 AAERRTYLSYNQGYPYSIM 718
>gi|308160768|gb|EFO63241.1| DNA repair helicase TFIIH P90 [Giardia lamblia P15]
Length = 765
Score = 281 bits (718), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 246/439 (56%), Gaps = 58/439 (13%)
Query: 14 PDLNMELKPHAQPRPYQEKSLSKMFGN---------GRARSGIIVLPCGAGKSLVGVSAA 64
P +N +LKP R YQ+ + K+ R SG++VLPCGAGKSL+GV+ A
Sbjct: 295 PQINAQLKPTTDLRDYQDHASKKVISEVQLDTSQVVKRCNSGLVVLPCGAGKSLLGVACA 354
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---FRGNAGVVVTTY 121
CR+ SC+ + +S QW QF +ST++ D++ F+++ E G V ++TY
Sbjct: 355 CRLGHSCIVVTNGNLSSKQWKSQFLQFSTVESDRVYIFSANKDEEAEFIPGYHIVFISTY 414
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----------KVISLTKS 171
M+ +S +S++ + ++ + WG++L DE H V A +R K +S
Sbjct: 415 QMLT--NAKSAKSKETLNKVHSLMWGIVLFDEAHQVMAETYRTLFVTDNVNTKANLFLRS 472
Query: 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231
+CK+GLTAT +RED+ +T+L +L+G KLYE+NW DL K GFIA +QCAE+ CPM F+
Sbjct: 473 YCKIGLTATPLREDDEMTNL-YLLGNKLYESNWSDLAKRGFIAKLQCAEIRCPMHHIFYD 531
Query: 232 EYLKKENSKKK--------------------QALYVMNPNKFRACEFLIRFHEQQRGDKI 271
++L + ++ + L ++NP K + +L +H +RGD++
Sbjct: 532 DWLDQNTAQAANQDRATVCVNDVMITRKTYMKYLTILNPYKVQTAWYLKEYH-TRRGDQV 590
Query: 272 IVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331
++F D + A YA P I GA S ER ++ AF +R ++ + LS VGD S+D+P
Sbjct: 591 LLFCDTIMAAKMYARMFDVPFIMGACSDDERECLVNAF-ATRTISCLMLSSVGDTSLDLP 649
Query: 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391
+ANVII++ SRRQEAQR+GRI R K + NA+FY LVS DT E +
Sbjct: 650 DANVIIELDWQERSRRQEAQRMGRISRPKSG----------DQNAYFYILVSEDTNEQYT 699
Query: 392 STKRQQFL-IDQGYSFKVI 409
+ +R+ +L +QGY + ++
Sbjct: 700 AAERRTYLSYNQGYPYSIM 718
>gi|159111749|ref|XP_001706105.1| DNA repair helicase TFIIH P90 [Giardia lamblia ATCC 50803]
gi|157434198|gb|EDO78431.1| DNA repair helicase TFIIH P90 [Giardia lamblia ATCC 50803]
Length = 765
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/439 (35%), Positives = 245/439 (55%), Gaps = 58/439 (13%)
Query: 14 PDLNMELKPHAQPRPYQEKSLSKMFGN---------GRARSGIIVLPCGAGKSLVGVSAA 64
P +N +LKP R YQ+ + K+ R SG++VLPCGAGKSL+GV+ A
Sbjct: 295 PQINAQLKPTTDLRDYQDHASKKVISEVQLDTSQIVKRCNSGLVVLPCGAGKSLLGVACA 354
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---FRGNAGVVVTTY 121
CR+ SC+ + +S QW QF +ST++ D++ F+++ E G V ++TY
Sbjct: 355 CRLGHSCIVVTNGNLSSKQWKSQFLQFSTVESDRVYIFSANKDEETEFIPGYHIVFISTY 414
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----------KVISLTKS 171
M+ +S +S++ + ++ + WG++L DE H V A +R K +S
Sbjct: 415 QMLT--NAKSAKSKETLNKVHSLMWGIVLFDEAHQVMAETYRTLFVTDNVNTKANLFLRS 472
Query: 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231
+CK+GLTAT +RED+ +T+L +L+G KLYE+NW DL K GFIA +QCAE+ CPM F+
Sbjct: 473 YCKIGLTATPLREDDEMTNL-YLLGNKLYESNWSDLAKRGFIAKLQCAEIRCPMHHIFYD 531
Query: 232 EYLKKENSKKK--------------------QALYVMNPNKFRACEFLIRFHEQQRGDKI 271
++L + ++ + L ++NP K + +L +H +RGD++
Sbjct: 532 DWLDQNTAQATNQDRTTVCVNDVMITRKTYMKYLTILNPYKVQTAWYLKEYH-TRRGDQV 590
Query: 272 IVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331
++F D + A YA P I GA S ER ++ AF +R ++ + LS VGD S+D+P
Sbjct: 591 LLFCDTIMAAKMYARMFDVPFIMGACSDDERECLVNAF-ATRTISCLMLSSVGDTSLDLP 649
Query: 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391
+ANVII++ SRRQEAQR+GRI R K + NA+FY LVS DT E
Sbjct: 650 DANVIIELDWQERSRRQEAQRMGRISRPKSG----------DQNAYFYILVSEDTNEQHT 699
Query: 392 STKRQQFL-IDQGYSFKVI 409
+ +R+ +L +QGY + ++
Sbjct: 700 AAERRTYLSYNQGYPYSIM 718
>gi|19353930|gb|AAH24446.1| Ercc3 protein, partial [Mus musculus]
Length = 252
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/244 (60%), Positives = 177/244 (72%), Gaps = 21/244 (8%)
Query: 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTK 304
LY MNPNKFRAC+FLI+FHE+ R DKIIVFADN+FAL EYA++L KP IYG TS ER +
Sbjct: 3 LYTMNPNKFRACQFLIKFHER-RNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQ 61
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
ILQ FK + +NTIF+SKVGD S D+PEANV+IQISSH GSRRQEAQRLGR+LRAK +
Sbjct: 62 ILQNFKHNPKINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMV 121
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYH 424
EEYNAFFYSLVS DTQEM YSTKRQ+FL+DQGYSFKVIT L + +L++
Sbjct: 122 ------AEEYNAFFYSLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEE-EELAFS 174
Query: 425 RLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH------KARRIAGSMSAMSGAQGMV 478
+EQ LL KVL+A D LD + + +A +A R G+MS++SGA V
Sbjct: 175 TKEEQQQLLQKVLAATD-------LDAEEEVVAGEFGSRSGQASRRCGTMSSLSGADDTV 227
Query: 479 YMEY 482
YMEY
Sbjct: 228 YMEY 231
>gi|340500260|gb|EGR27154.1| hypothetical protein IMG5_200940 [Ichthyophthirius multifiliis]
Length = 513
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 154/396 (38%), Positives = 228/396 (57%), Gaps = 28/396 (7%)
Query: 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90
E +L +F +G+ARSGIIVLPCGAGK+L+G+ A +IK+S L + + QW +F
Sbjct: 92 ENTLENIFISGKARSGIIVLPCGAGKTLLGIIVAEKIKRSTLVICDIDTATKQWKTEFLR 151
Query: 91 WSTIQDDQICRFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEK------------ 136
W+ I++D+I T K+ G +++TTY + R +K
Sbjct: 152 WTNIKEDKIVIRTGQRKDEIPQNGEPFILITTYKQLTSVMNRVNNQKKNNINRTQYDEMD 211
Query: 137 --IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+ + I N++WGL L DE + A +R++ K K+GLTAT RED RITDL +
Sbjct: 212 RDVTDIIHNQQWGLCLADETQMSAAETYREIFKQFKFKMKIGLTATPYREDNRITDLFHM 271
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254
IGPKLYE N +L++ G +A C M ++ ++ L +E + Y N KF+
Sbjct: 272 IGPKLYEVNISELIQDGHLAKPYCVVFRVKMAEK--AKQLLQEKPQCDVVAYTGNQKKFK 329
Query: 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV-ERTKILQAFKCSR 313
+LI+ HE RGDKI+VF D++ L E++ +L P+I G + E+ L+ F+
Sbjct: 330 LLAYLIKLHE-IRGDKILVFCDSIAVLEEFSKRLCYPVICGNVKKLDEKLAWLEMFRKGH 388
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
+NT+FLS+VGD ++D+P ANV+IQI H GSR+QE QRLGRI+R R G K E
Sbjct: 389 -INTLFLSRVGDTALDLPSANVLIQIGFHFGSRKQEVQRLGRIMR-------RKEGQKGE 440
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
YNA+FY+++S DT++ RQ+ L+D G F+VI
Sbjct: 441 YNAYFYTIISKDTRQAQIYYHRQKCLVDLGLDFEVI 476
>gi|385302856|gb|EIF46964.1| dna repair helicase rad25 [Dekkera bruxellensis AWRI1499]
Length = 273
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 124/193 (64%), Positives = 158/193 (81%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
MLEEYDFRND N +L ++LKP Q RPYQEKSLSKMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 74 MLEEYDFRNDVRNANLEIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVG 133
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
++AAC I+KS + L T++VSV QW QF W TIQ +QI FTS++KE F G++G+V++T
Sbjct: 134 ITAACTIRKSAIVLCTSSVSVMQWRQQFLQWCTIQPNQIAVFTSENKEMFSGDSGLVIST 193
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTAT 180
Y+MVA RS +S+K+++ I +REWG +++DEVHVVPA MFR+V++ +H KLGLTAT
Sbjct: 194 YSMVANTRNRSHDSQKVMDFITSREWGFIILDEVHVVPAAMFRRVVTTIAAHAKLGLTAT 253
Query: 181 LVREDERITDLNF 193
LVREDE+I+DLNF
Sbjct: 254 LVREDEKISDLNF 266
>gi|146164780|ref|XP_001470758.1| rad25/xp-B DNA repair helicase [Tetrahymena thermophila]
gi|146145659|gb|EDK31797.1| rad25/xp-B DNA repair helicase [Tetrahymena thermophila SB210]
Length = 698
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 154/413 (37%), Positives = 232/413 (56%), Gaps = 31/413 (7%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L++EL+ QPR YQ+K+L +F + RS IVLPCGAGK+L+G+ +IK + + +
Sbjct: 244 LDIELRQITQPRIYQQKALKNIFVCEKPRSATIVLPCGAGKTLLGIIVTEKIKGNTIVIC 303
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK--ERFRGNAGVVVTTYNMVA-------- 125
+ QW +F W+T++ D+I +T +K + + +++TT+ ++
Sbjct: 304 DIDTATKQWKNEFIRWTTVKPDRIKIYTGKTKNLQEKQTKPFILITTFKQLSSIIKSNKL 363
Query: 126 ---------FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176
K + + I+E EW L + DE A ++K+ K+G
Sbjct: 364 QKEKRQDMDTSSKYETKMDHYIQE--EMEWDLCIADETQYSAASTYKKIFEEFNFKLKIG 421
Query: 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK 236
LTAT RED +I DL +IGPKLYEAN +L++ ++A C C M E +++K
Sbjct: 422 LTATPYREDNKIDDLFHVIGPKLYEANISELIQDSYLAKPYCVVFRCKM-HECCEDFMKD 480
Query: 237 ENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGA 296
K K +L NP KF+ +LI+FHE R DKI+VF D + L Y+ K+ P IYG
Sbjct: 481 RKFKNKPSLQSGNPEKFKLLYYLIKFHE-SRKDKILVFCDQIPVLKYYSQKMGYPAIYGE 539
Query: 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRI 356
+E+ L F+ ++NT+FLS+VGD ++D+P ANV IQI GSRRQE QRLGRI
Sbjct: 540 VGLLEKLVWLDLFR-KGEINTLFLSRVGDTALDLPIANVCIQIGFQFGSRRQEVQRLGRI 598
Query: 357 LRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
+R R G K EYNAFFY++VS +T++ + +RQ+ L+D G +F+VI
Sbjct: 599 MR-------RKEGQKGEYNAFFYTIVSKNTEQAQFYYRRQKSLMDLGINFEVI 644
>gi|302417724|ref|XP_003006693.1| DNA repair helicase RAD25 [Verticillium albo-atrum VaMs.102]
gi|261354295|gb|EEY16723.1| DNA repair helicase RAD25 [Verticillium albo-atrum VaMs.102]
Length = 518
Score = 265 bits (676), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 122/200 (61%), Positives = 163/200 (81%), Gaps = 1/200 (0%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D N +L ++L+P AQ RPYQEKSLSKMFGNGRA+SGIIVLPCGAGK+LVG
Sbjct: 313 VLEEYDFRKDEFNANLEIDLRPGAQIRPYQEKSLSKMFGNGRAKSGIIVLPCGAGKTLVG 372
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK-ERFRGNAGVVVT 119
++AAC +KK + L T+++SV QW +F WS I+ + I FTSD+K + F G+ G++VT
Sbjct: 373 ITAACTVKKGVIVLCTSSMSVVQWRNEFLKWSNIKPEDIAAFTSDNKGQTFTGSTGIIVT 432
Query: 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
TY+MV +RS E++K+++ +++REWGL+L+DEVHVVPA++FRKV S K+H KLGLTA
Sbjct: 433 TYSMVTQTRERSHEAKKMMDFLQHREWGLMLLDEVHVVPANIFRKVTSSIKTHSKLGLTA 492
Query: 180 TLVREDERITDLNFLIGPKL 199
TL+RED++I+DLNFLIGPK
Sbjct: 493 TLLREDDKISDLNFLIGPKF 512
>gi|211909008|gb|ACJ12794.1| excision repair cross-complementing rodent repair deficiency
complementation group 3 [Sebastiscus marmoratus]
Length = 182
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 115/183 (62%), Positives = 153/183 (83%), Gaps = 1/183 (0%)
Query: 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91
KSL KMFGNGRARSG+IVLPCGAGKSLVGV+AAC ++K CL L ++VSV+QW QFK+W
Sbjct: 1 KSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKRCLVLGNSSVSVEQWKAQFKMW 60
Query: 92 STIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLM 151
STI D QICRFTSD+K+ G V ++TY+M+ KRS E+E+++E +R++EWGL+++
Sbjct: 61 STIDDSQICRFTSDAKDNPIG-CSVAISTYSMLGHTTKRSWEAERVMEWMRSQEWGLIIL 119
Query: 152 DEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGG 211
DEVH +PA MFR+V+++ ++HCK+GLTATLVRED++I DLNFLIGPKL+EANW++L G
Sbjct: 120 DEVHTIPAKMFRRVLTIVQAHCKMGLTATLVREDDKIVDLNFLIGPKLFEANWMELQNSG 179
Query: 212 FIA 214
+IA
Sbjct: 180 YIA 182
>gi|291303533|ref|YP_003514811.1| type III restriction protein res subunit [Stackebrandtia
nassauensis DSM 44728]
gi|290572753|gb|ADD45718.1| type III restriction protein res subunit [Stackebrandtia
nassauensis DSM 44728]
Length = 549
Score = 253 bits (647), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 228/385 (59%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ++++ + G SG++VLPCGAGK+LVG + + +K+ L L TN VSV QW
Sbjct: 181 QLRPYQKEAVESFWSGG---SGVVVLPCGAGKTLVGAAVMAQAQKTTLILVTNTVSVHQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +D+I ++ + KE V + TY ++ RS+ + ++ R
Sbjct: 238 RRELLARTTLTEDEIGEYSGERKE----IRPVTIATYQVMT---ARSKGEFRHLDLFDAR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIVYDEVHLLPAPIFRFSADL-QTRRRLGLTATLVREDGREADVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV +T Y E + + +A M+ K A E ++ H
Sbjct: 350 RDVESQGWIAPAECTEVRVTLTDAERMAYAVCEETDRYRAAATMD-AKLDAVESIVGKH- 407
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+G++++V L L + + L P++ G+T +R ++ AF+ S +L T+ +SKVG
Sbjct: 408 --KGERVLVIGAYLDQLEDLSKHLDAPVVQGSTRTKQREELFAAFR-SGELTTLIVSKVG 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V IQ+S GSR++EAQRLGRILR K + A FY++VS
Sbjct: 465 NFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRILRPK----------SDGRGAHFYTVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY+++++
Sbjct: 515 DTVDTEYAAHRQRFLAEQGYAYRIV 539
>gi|452991606|emb|CCQ97028.1| putative ATP-dependent helicase [Clostridium ultunense Esp]
Length = 580
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 220/384 (57%), Gaps = 22/384 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ +++ G A SG++VLPCGAGK++VG+ ++K L L TN SV QW
Sbjct: 193 RDYQSEAVEAFHAQGSAYGGSGVLVLPCGAGKTIVGLGVMEKVKMETLILTTNGTSVKQW 252
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I +T + KE V V TY ++ + + +E +E R
Sbjct: 253 VRELLDKTSLTEEKIGEYTGEKKE----IRPVTVATYQILTYRPDKEKEEYPHLELFNQR 308
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR + + ++ +LGLTATLVRED R D+ LIG K + W
Sbjct: 309 NWGLIIYDEVHLLPAPVFR-ITADIQAKRRLGLTATLVREDGREEDVFSLIGSKKADVPW 367
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C E+ PM + Y+ +++K + NP K + L++ H
Sbjct: 368 KDLEDEGWIAEASCIEIRVPMPTDVRENYVVA-GAREKYRIAAENPEKLAVLDHLLKRH- 425
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
R D+++V + L E A + P+I G T+ ER K+ + F+ + + I +SKV
Sbjct: 426 --REDQVLVIGQYIRQLEEIATRYNAPLITGKTTQWEREKLYEDFRTGK-IRLIVVSKVA 482
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+ANV IQ+S GSR++EAQRLGRILR K + E A+FY+LV+
Sbjct: 483 NFAIDLPDANVAIQVSGTYGSRQEEAQRLGRILRPK----------ERENKAYFYTLVTR 532
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+++ ++ RQ FL++QGYS+++
Sbjct: 533 DSRDQEFAMNRQLFLVEQGYSYEI 556
>gi|25027447|ref|NP_737501.1| DNA helicase [Corynebacterium efficiens YS-314]
gi|259507148|ref|ZP_05750048.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
gi|23492729|dbj|BAC17701.1| putative DNA helicase [Corynebacterium efficiens YS-314]
gi|259165271|gb|EEW49825.1| ATP-dependent DNA helicase [Corynebacterium efficiens YS-314]
Length = 557
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 146/383 (38%), Positives = 217/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+ QW
Sbjct: 187 RDYQQYAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGRQWKD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY +V +R++ K +E +R+W
Sbjct: 244 ELLRRTTLTEDEIGEYSGERKE----IRPVTIATYQVVT---RRTKGEYKALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA C EV MT Y E + + Y + + R EQ
Sbjct: 356 LEAQGFIATADCVEVRTTMTDAERMVYATAETADR----YRLAATAHTKTRVVRRILEQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G ++ L L E + P++ G TS+ +R ++ F+ S +LN + +SKV +
Sbjct: 412 QGQPTLIIGAYLDQLEELGAEFDAPIVDGKTSNKKRGELFDRFR-SGELNVLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKAD------GGE----AHFYSVVSRDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++++I
Sbjct: 521 LDTEYAAHRQRFLAEQGYAYRII 543
>gi|118365862|ref|XP_001016150.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89297917|gb|EAR95905.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 683
Score = 248 bits (634), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 227/401 (56%), Gaps = 17/401 (4%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L+++LK QPR YQ+K+L +F + RS IVLPCGAGK+L+G+ RIK + + +
Sbjct: 239 LDIKLKQTTQPRIYQQKALKNIFVCEKPRSATIVLPCGAGKTLLGIILTERIKGNTIVIC 298
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK--ERFRGNAGVVVTTYNMVAF---GGKR 130
+ +QW +F W+T++DD I +T +K + + +++TT+ ++ K
Sbjct: 299 DIYTATNQWKNEFTKWTTVEDDTIKIYTGKTKNLQVEQTKPFILITTFKQLSSIIKSNKL 358
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI--SLTKSHCKLGLTATLVREDERI 188
+E + +++ E + + +V K + L ++ + RED +I
Sbjct: 359 QKEKRQYMDKSSELETNMNHYIQKEMVINQFIHKNVFNYLNLIQYRINCNSVPYREDNKI 418
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
DL +IGPKLYEAN +L++ ++A C C M E +++K K K +L
Sbjct: 419 DDLFHVIGPKLYEANISELIQDSYLAKPYCVVFRCKM-HECCEDFMKDRKFKNKPSLQSG 477
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP KF+ +LI+FHE R DKI+VF D + L Y+ K+ P IYG +E+ L
Sbjct: 478 NPQKFKLLYYLIKFHE-SRNDKILVFCDQIPVLKYYSQKMGYPAIYGEVDLLEKLGWLDL 536
Query: 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368
F+ ++NT+FLS+VGD ++D+P ANV IQI GSRRQE QRLGRI+R R
Sbjct: 537 FR-EGEINTLFLSRVGDTALDLPIANVCIQIGFQFGSRRQEVQRLGRIMR-------RKE 588
Query: 369 GGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
G K EYNAFFY++VS +T++ + +RQ+ L+D G +F+VI
Sbjct: 589 GQKGEYNAFFYTIVSKNTEQAQFYYRRQKSLMDLGINFEVI 629
>gi|430746995|ref|YP_007206124.1| DNA/RNA helicase [Singulisphaera acidiphila DSM 18658]
gi|430018715|gb|AGA30429.1| DNA/RNA helicase, superfamily II [Singulisphaera acidiphila DSM
18658]
Length = 570
Score = 248 bits (633), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 153/403 (37%), Positives = 228/403 (56%), Gaps = 27/403 (6%)
Query: 15 DLNMELKPHAQP------RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACR 66
DL +E++ A+ R YQ ++ G AR SG++VLPCGAGK++VG++A
Sbjct: 172 DLAVEIREIARSGLPFKVRDYQRGAVDAFHAGGDARGGSGVVVLPCGAGKTIVGLTALAA 231
Query: 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126
+KK+ L L T+ +V+QW + + + D + +T DSK A V + TY +V +
Sbjct: 232 LKKNTLVLTTSTTAVEQWKREILDKTDLDDSMVATYTGDSK----AIAPVTLATYQIVTY 287
Query: 127 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186
K+ + R+WGL++ DEVH++PA +FR V + ++ +LGLTATLVRED
Sbjct: 288 RPKKDGDFPH-FSLFNQRDWGLIIYDEVHLLPAPVFR-VTADIQARRRLGLTATLVREDN 345
Query: 187 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246
R D+ LIGPK ++ W L G+IA QC EV + + EY E + K L
Sbjct: 346 REEDVFSLIGPKKFDVPWRVLESKGWIAEAQCHEVRLGLPGDARMEYAVAE-WRDKFRLA 404
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
NP+K L+ H+ D+++V L L A + P+I G TS+ ER +
Sbjct: 405 SENPSKDDLVALLLDEHDGP-DDRVLVIGQYLKQLRRIAARFDVPLITGQTSNSEREDLY 463
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
F+ D+ + LSKVG+ +ID+P+ANV+IQ+S GSR++EAQRLGRILR K
Sbjct: 464 GRFRRG-DIRRLVLSKVGNFAIDLPDANVMIQVSGTFGSRQEEAQRLGRILRPK------ 516
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
+ E A FYSLV+ DT+EM ++ RQ FL +QGYS++++
Sbjct: 517 ----EGEVPASFYSLVTRDTREMDFAHHRQLFLTEQGYSYEIL 555
>gi|433543346|ref|ZP_20499755.1| ATP-dependent helicase [Brevibacillus agri BAB-2500]
gi|432185347|gb|ELK42839.1| ATP-dependent helicase [Brevibacillus agri BAB-2500]
Length = 554
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 143/391 (36%), Positives = 222/391 (56%), Gaps = 24/391 (6%)
Query: 21 KPHAQPRPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78
KP A RPYQ++++ + G A SG++VLPCGAGK+++G+ A +++ + L L TN
Sbjct: 180 KPFAL-RPYQQEAVDAFYRGGSALGGSGVLVLPCGAGKTVIGIGAISQLQTATLILTTNT 238
Query: 79 VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKII 138
SV QW + + + + + +T D KE + V TY ++ + +E +
Sbjct: 239 TSVRQWIAELLDKTDLDPELVGEYTGDHKE----VKPITVATYQILTYRPTSLDEFPH-M 293
Query: 139 EEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+ R+WGL++ DEVH++PA +FR V S ++ +LGLTATLVRED R D+ LIGPK
Sbjct: 294 KLFSERDWGLIIYDEVHLLPAPVFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPK 352
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258
YE W + G+IA +C E+ P ++ Y +++K + NP K +
Sbjct: 353 KYEVPWKAMEDAGWIAEARCREIRLPFEPKWREAY-AHATARQKFRIAAENPKKLDVVKK 411
Query: 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTI 318
L+ HE GD++++ + L + A L+ P+I G ER + Q FK ++ +
Sbjct: 412 LLERHE---GDRVLIIGQYVDQLEQMATALQLPLITGKVPEKERETLYQQFKKG-EITRL 467
Query: 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 378
+SKV + ++D+P+ANV IQIS GSR++EAQRLGRILR K E A F
Sbjct: 468 IVSKVANFAVDLPDANVAIQISGTFGSRQEEAQRLGRILRPK----------TENNTAHF 517
Query: 379 YSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
Y+LV+ DT+E +S RQ FL++QGY +++I
Sbjct: 518 YTLVTRDTREQEFSLHRQLFLVEQGYPYEII 548
>gi|68535479|ref|YP_250184.1| helicase [Corynebacterium jeikeium K411]
gi|68263078|emb|CAI36566.1| putative helicase [Corynebacterium jeikeium K411]
Length = 548
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 149/388 (38%), Positives = 221/388 (56%), Gaps = 26/388 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG ++ + K + L L TN V+ QW
Sbjct: 185 QLRDYQEMAADSFWEGG---SGVVVLPCGAGKTMVGAASMAKAKATTLILVTNTVAGRQW 241
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V + TY +V ++S+ + +E +R
Sbjct: 242 KDELVRRTSLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKSKGEYRALELFDSR 294
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 295 DWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 353
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV +T+ Y E S K + L P K + ++ H
Sbjct: 354 KDIESQGWIAPADCTEVRVQLTEAERMVYATAEQSDKYR-LAATTPTKTKVVRKIMDMHP 412
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ I + D L E A +L P+I G T + +R K+ Q F+ +L T+ +SKV
Sbjct: 413 DEPTLIIGAYIDQ---LEEIAEELDVPVIDGKTGNAKREKLYQQFRDG-ELKTLVVSKVA 468
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V IQIS GSR++EAQRLGRILR K GG AFFYS+V+
Sbjct: 469 NFSIDLPGASVAIQISGTFGSRQEEAQRLGRILRPKPD------GG----GAFFYSIVAR 518
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSL 412
DT + Y+ RQ+FL +QGY ++++ S
Sbjct: 519 DTLDADYAAHRQRFLAEQGYGYRIVDSF 546
>gi|443309230|ref|ZP_21038971.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
gi|442780727|gb|ELR90879.1| DNA/RNA helicase, superfamily II [Synechocystis sp. PCC 7509]
Length = 562
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 229/384 (59%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+++++ + GRA+ SG+IVLPCGAGK++VG++A ++ + L L ++ SV QW
Sbjct: 190 RHYQKEAVAAFYQAGRAQGGSGVIVLPCGAGKTMVGLAAMTTVQSNTLVLTSSLTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +D I ++ +SK+ A V + TY ++++ + E + R
Sbjct: 250 RRELLDKTTLPEDAIAEYSGESKQ----TAPVTLATYQILSYRSNKDGEFPH-FQLFSAR 304
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATL+RED + D+ LIGPK Y+ W
Sbjct: 305 SWGLIIYDEVHLLPAPIFRITAEL-QARRRLGLTATLIREDGKEGDVFALIGPKRYDVPW 363
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L GFIA +C E+ P + EY + + + + NP K+ + L+ +
Sbjct: 364 RELEVQGFIAPAECVEIRVPQAPDRQMEY-ALADKRHQFRIAAENPRKYEVVQSLL---Q 419
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
++ G +I++ + L L + A K + P++ G T ER ++ + F+C + + LS+VG
Sbjct: 420 KEAGHRILIIGEYLEQLKQIAQKTKLPVVTGKTPQSERDRLYEQFRCG-AITGLILSRVG 478
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A+V+IQ+S GSR++EAQRLGR+LR K + ++A FY+LVS
Sbjct: 479 NFALDLPDADVLIQVSGKYGSRQEEAQRLGRVLRPK----------TDGHSAHFYTLVSL 528
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ FL++QGY++++
Sbjct: 529 RTCEEDFARHRQLFLVEQGYNYRI 552
>gi|399052627|ref|ZP_10741929.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
gi|398049483|gb|EJL41902.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. CF112]
Length = 554
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 142/391 (36%), Positives = 221/391 (56%), Gaps = 24/391 (6%)
Query: 21 KPHAQPRPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78
KP A RPYQ++++ + G A SG++VLPCGAGK+++G+ A +++ + L L TN
Sbjct: 180 KPFAL-RPYQQEAVDAFYRGGSALGGSGVLVLPCGAGKTVIGIGAISQLQTATLILTTNT 238
Query: 79 VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKII 138
SV QW + + + + + + D KE + V TY ++ + +E +
Sbjct: 239 TSVRQWIAELLDKTDLDPELVGEYIGDHKE----VKPITVATYQILTYRPTSLDEFPHM- 293
Query: 139 EEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+ R+WGL++ DEVH++PA +FR V S ++ +LGLTATLVRED R D+ LIGPK
Sbjct: 294 KLFSERDWGLIIYDEVHLLPAPVFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPK 352
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258
YE W + G+IA +C E+ P ++ Y +++K + NP K +
Sbjct: 353 KYEVPWKAMEDAGWIAEARCREIRLPFEPKWREAY-AHATARQKFRIAAENPKKLDVVKK 411
Query: 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTI 318
L+ HE GD++++ + L + A L+ P+I G ER + Q FK ++ +
Sbjct: 412 LLERHE---GDRVLIIGQYVDQLEQMATALQLPLITGKVPEKERETLYQQFKKG-EITRL 467
Query: 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 378
+SKV + ++D+P+ANV IQIS GSR++EAQRLGRILR K E A F
Sbjct: 468 IVSKVANFAVDLPDANVAIQISGTFGSRQEEAQRLGRILRPK----------TENNTAHF 517
Query: 379 YSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
Y+LV+ DT+E +S RQ FL++QGY +++I
Sbjct: 518 YTLVTRDTREQEFSLHRQLFLVEQGYPYEII 548
>gi|260579780|ref|ZP_05847634.1| helicase domain protein, partial [Corynebacterium jeikeium ATCC
43734]
gi|258602081|gb|EEW15404.1| helicase domain protein [Corynebacterium jeikeium ATCC 43734]
Length = 362
Score = 244 bits (624), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 148/386 (38%), Positives = 220/386 (56%), Gaps = 26/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG ++ + K + L L TN V+ QW
Sbjct: 1 RDYQEMAADSFWEGG---SGVVVLPCGAGKTMVGAASMAKAKATTLILVTNTVAGRQWKD 57
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY +V ++S+ + +E +R+W
Sbjct: 58 ELVRRTSLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKSKGEYRALELFDSRDW 110
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 111 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 169
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E S K + L P K + ++ H +
Sbjct: 170 IESQGWIAPADCTEVRVQLTEAERMVYATAEQSDKYR-LAATTPTKTKVVRKIMDMHPDE 228
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L E A +L P+I G T + +R K+ Q F+ +L T+ +SKV +
Sbjct: 229 PTLIIGAYIDQ---LEEIAEELDVPVIDGKTGNAKREKLYQQFRDG-ELKTLVVSKVANF 284
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A+V IQIS GSR++EAQRLGRILR K GG AFFYS+V+ DT
Sbjct: 285 SIDLPGASVAIQISGTFGSRQEEAQRLGRILRPKPD------GG----GAFFYSIVARDT 334
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSL 412
+ Y+ RQ+FL +QGY ++++ S
Sbjct: 335 LDADYAAHRQRFLAEQGYGYRIVDSF 360
>gi|337290254|ref|YP_004629275.1| hypothetical protein CULC22_00643 [Corynebacterium ulcerans
BR-AD22]
gi|384515173|ref|YP_005710265.1| hypothetical protein CULC809_00635 [Corynebacterium ulcerans 809]
gi|334696374|gb|AEG81171.1| hypothetical protein CULC809_00635 [Corynebacterium ulcerans 809]
gi|334698560|gb|AEG83356.1| hypothetical protein CULC22_00643 [Corynebacterium ulcerans
BR-AD22]
Length = 549
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 226/387 (58%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ+ + + G SG++VLPCGAGK++VG ++ + + + L L TN V+
Sbjct: 183 HWELRDYQKMAADSFWEGG---SGVVVLPCGAGKTMVGAASMAQAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +C EV MT+E Y EN + + + +K RA + L++
Sbjct: 352 PWKDLEQRGFIATAECTEVRTTMTEEERMLYATAENQDRYR-IAACAESKLRAVDTLLQR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ D+ T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGTRFGVPVIEGKTSNKKREELFNKFRAG-DITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA V IQ+S GSR++EAQRLGR+LR K + G E A FYS+V
Sbjct: 467 VANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------SDGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY++++I
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRII 543
>gi|326773086|ref|ZP_08232370.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
gi|326637718|gb|EGE38620.1| ATP-dependent DNA helicase [Actinomyces viscosus C505]
Length = 564
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 146/385 (37%), Positives = 225/385 (58%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+LVG ++ + + L L TNAVS QW
Sbjct: 197 QLRPYQCEAVESFWAGG---SGVVVLPCGAGKTLVGAASMAKSSTTTLILVTNAVSARQW 253
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +++I ++ KE V + TY ++ R + ++ + +
Sbjct: 254 KEELIRFTTLTEEEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYPHLDLLDSH 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 307 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K E L+ HE
Sbjct: 366 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPEERYR-LAACSPRKLPIIEALLARHE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V + LTE A L P+I GAT+ ER ++ AF+C ++ T+ +SKV
Sbjct: 425 ---GESALVIGQYVDQLTEIAEHLDAPVITGATTVRERQRLYDAFRCG-EIRTLVVSKVA 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V IQ+S GSR++EAQRLGRI+R K ED G++ A FY++V+
Sbjct: 481 NFSIDLPGASVAIQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVAR 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+T RQ+FL +QGY++ ++
Sbjct: 531 DTADQEYATHRQRFLAEQGYAYAIL 555
>gi|397653495|ref|YP_006494178.1| hypothetical protein CULC0102_0743 [Corynebacterium ulcerans 0102]
gi|393402451|dbj|BAM26943.1| hypothetical protein CULC0102_0743 [Corynebacterium ulcerans 0102]
Length = 549
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 226/387 (58%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ+ + + G SG++VLPCGAGK++VG ++ + + + L L TN V+
Sbjct: 183 HWELRDYQKMAADSFWEGG---SGVVVLPCGAGKTMVGAASMAQAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +C EV MT+E Y EN + + + +K RA + L++
Sbjct: 352 PWKDLEQRGFIATAECTEVRTTMTEEERMLYATAENQDRYR-IAACAESKLRAVDTLLQR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ D+ T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGARFGVPVIEGKTSNKKREELFNKFRAG-DITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA V IQ+S GSR++EAQRLGR+LR K + G E A FYS+V
Sbjct: 467 VANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------SDGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY++++I
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRII 543
>gi|384504192|ref|YP_005680862.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1002]
gi|302330291|gb|ADL20485.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1002]
Length = 549
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 222/387 (57%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+
Sbjct: 183 HWELRDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +C EV MT E Y EN + + + +K RA + L+
Sbjct: 352 PWKDLEQRGFIATAECTEVRTTMTHEERMLYATAENQDRYR-IAACAESKLRAVDTLLHR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ + T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAGH-ITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V
Sbjct: 467 VANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY+++++
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRIV 543
>gi|300858010|ref|YP_003782993.1| hypothetical protein cpfrc_00592 [Corynebacterium
pseudotuberculosis FRC41]
gi|375288177|ref|YP_005122718.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 3/99-5]
gi|383313771|ref|YP_005374626.1| UvrABC system protein B [Corynebacterium pseudotuberculosis P54B96]
gi|384506284|ref|YP_005682953.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|384508373|ref|YP_005685041.1| UvrABC system protein B [Corynebacterium pseudotuberculosis I19]
gi|384510465|ref|YP_005690043.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
gi|385807048|ref|YP_005843445.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 267]
gi|387136132|ref|YP_005692112.1| UvrABC system protein B [Corynebacterium pseudotuberculosis
42/02-A]
gi|300685464|gb|ADK28386.1| hypothetical protein cpfrc_00592 [Corynebacterium
pseudotuberculosis FRC41]
gi|302205735|gb|ADL10077.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|308275971|gb|ADO25870.1| UvrABC system protein B [Corynebacterium pseudotuberculosis I19]
gi|341824404|gb|AEK91925.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
gi|348606577|gb|AEP69850.1| UvrABC system protein B [Corynebacterium pseudotuberculosis
42/02-A]
gi|371575466|gb|AEX39069.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 3/99-5]
gi|380869272|gb|AFF21746.1| UvrABC system protein B [Corynebacterium pseudotuberculosis P54B96]
gi|383804441|gb|AFH51520.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 267]
Length = 549
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 222/387 (57%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+
Sbjct: 183 HWELRDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +C EV MT E Y EN + + + +K RA + L+
Sbjct: 352 PWKDLEQRGFIATAECTEVRTTMTHEERMLYATAENQDRYR-IAACAESKLRAVDTLLHR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ + T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAGH-ITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V
Sbjct: 467 VANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY+++++
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRIV 543
>gi|379714872|ref|YP_005303209.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 316]
gi|387138191|ref|YP_005694170.1| UvrABC system protein B [Corynebacterium pseudotuberculosis CIP
52.97]
gi|387140207|ref|YP_005696185.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1/06-A]
gi|389849940|ref|YP_006352175.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 258]
gi|349734669|gb|AEQ06147.1| UvrABC system protein B [Corynebacterium pseudotuberculosis CIP
52.97]
gi|355391998|gb|AER68663.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 1/06-A]
gi|377653578|gb|AFB71927.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 316]
gi|388247246|gb|AFK16237.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 258]
Length = 549
Score = 244 bits (623), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 222/387 (57%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+
Sbjct: 183 HWELRDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +C EV MT E Y EN + + + +K RA + L+
Sbjct: 352 PWKDLEQRGFIATAECTEVRTTMTHEERMLYATAENQDRYR-IAACAESKLRAVDTLLHR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ + T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGARFDAPVIEGETSNKKREELFNKFRAGH-ITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V
Sbjct: 467 VANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY+++++
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRIV 543
>gi|386739932|ref|YP_006213112.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 31]
gi|384476626|gb|AFH90422.1| UvrABC system protein B [Corynebacterium pseudotuberculosis 31]
Length = 549
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 144/387 (37%), Positives = 223/387 (57%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+
Sbjct: 183 HWELRDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +CAEV MT E Y EN + + + +K RA + L+
Sbjct: 352 PWKDLEQRGFIATAECAEVRTTMTHEERMLYATAENQDRYR-IAACAESKLRAVDTLLHR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ + T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAGH-ITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SI++PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V
Sbjct: 467 VANFSINLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY+++++
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRIV 543
>gi|329946580|ref|ZP_08294045.1| helicase protein [Actinomyces sp. oral taxon 170 str. F0386]
gi|328527084|gb|EGF54093.1| helicase protein [Actinomyces sp. oral taxon 170 str. F0386]
Length = 560
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 224/385 (58%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+LVG ++ R + L L TNAVS QW
Sbjct: 197 QLRPYQSEAVESFWAGG---SGVVVLPCGAGKTLVGAASMARSSTTTLILVTNAVSARQW 253
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +D+I ++ KE + + TY ++ R + ++ + +
Sbjct: 254 KEELMRFTTLTEDEIGEYSGSRKE----VRPITIATYQVLT---TRRKGVYPHLDLLDSH 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 307 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K + L+ HE
Sbjct: 366 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPEERYR-LAASSPRKLPIIDALLARHE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V + LTE A L P+I G+T+ ER ++ AF+ S D+ T+ +SKV
Sbjct: 425 ---GESALVIGQYVDQLTEIAEHLGAPVITGSTTVHERQRLYDAFR-SGDIRTLVVSKVA 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V +Q+S GSR++EAQRLGRI+R K ED G++ A FY++V+
Sbjct: 481 NFSIDLPGASVAVQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVAR 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY++ +I
Sbjct: 531 DTADQEYAAHRQRFLAEQGYAYAII 555
>gi|172041254|ref|YP_001800968.1| helicase [Corynebacterium urealyticum DSM 7109]
gi|171852558|emb|CAQ05534.1| putative helicase [Corynebacterium urealyticum DSM 7109]
Length = 555
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/392 (38%), Positives = 224/392 (57%), Gaps = 26/392 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG ++ + K + L L TN V+ QW
Sbjct: 185 QLRDYQEMAADSFWEGG---SGVVVLPCGAGKTMVGAASMAKAKATTLILVTNTVAGRQW 241
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE R V + TY +V ++S+ + +E +R
Sbjct: 242 KDELVRRTSLTEDEIGEYSGEKKE-IRP---VTIATYQVVT---RKSKGEYRALELFDSR 294
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 295 DWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 353
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV +++ Y E S K + L P K R + L+ H
Sbjct: 354 KDIEAQGWIAPADCTEVRVQLSESERMVYATAEQSDKYR-LAATTPAKNRVVKKLLAMHP 412
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
++ I + D L E A +L P+I G TS +R K+ Q F+ ++ T+ +SKV
Sbjct: 413 EEPALIIGAYVDQ---LEEIAEELDVPVIDGKTSTAKREKLYQQFRDG-EITTLAVSKVA 468
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V IQIS GSR++EAQRLGRILR K GG AFFY++V+
Sbjct: 469 NFSIDLPGASVAIQISGTFGSRQEEAQRLGRILRPKPD------GG----GAFFYTVVTR 518
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSLPPPD 416
DT + Y+ R +FL +QGY + ++ + PD
Sbjct: 519 DTLDADYAAHRMRFLAEQGYGYGIMDAADLPD 550
>gi|374533704|gb|AEZ53765.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Scaphiopus couchii]
Length = 172
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 121/177 (68%), Positives = 141/177 (79%), Gaps = 8/177 (4%)
Query: 213 IANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 272
IA VQCAEVWCPM+ EF+ EY+ + +KK+ LY MNPNKFRAC+FLI+FHE+ R DKII
Sbjct: 3 IAKVQCAEVWCPMSPEFYREYVAIK-TKKRILLYTMNPNKFRACQFLIKFHER-RNDKII 60
Query: 273 VFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332
VFADN+FAL EYA++L KP IYG TS ER +ILQ FK + +NTIF+SKVGD S D+PE
Sbjct: 61 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 120
Query: 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389
ANV+IQISSH GSRRQEAQRLGR+LRAK + EEYNAFFYSLVS DTQEM
Sbjct: 121 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGM------VAEEYNAFFYSLVSQDTQEM 171
>gi|325066723|ref|ZP_08125396.1| type III restriction protein res subunit [Actinomyces oris K20]
Length = 564
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 224/385 (58%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+LVG ++ + + L L TNAVS QW
Sbjct: 197 QLRPYQSEAVESFWSGG---SGVVVLPCGAGKTLVGAASMAKSSTTTLILVTNAVSARQW 253
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +++I ++ KE V + TY ++ R + ++ + +
Sbjct: 254 KEELIRFTTLTEEEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYPHLDLLDSH 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 307 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K + L+ HE
Sbjct: 366 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPDERYR-LAACSPRKLPIIDALLARHE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V + LTE A L P+I GAT+ ER ++ AF+C ++ T+ +SKV
Sbjct: 425 ---GESALVIGQYVDQLTEIAEHLDAPVITGATTVRERQRLYDAFRCG-EIRTLVVSKVA 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V IQ+S GSR++EAQRLGRI+R K ED G++ A FY++V+
Sbjct: 481 NFSIDLPGASVAIQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVAR 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY++ +I
Sbjct: 531 DTADQEYAAHRQRFLAEQGYAYAII 555
>gi|304404122|ref|ZP_07385784.1| type III restriction protein res subunit [Paenibacillus
curdlanolyticus YK9]
gi|304347100|gb|EFM12932.1| type III restriction protein res subunit [Paenibacillus
curdlanolyticus YK9]
Length = 568
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 220/382 (57%), Gaps = 23/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ +++ + G SG++VLPCGAGK+++G+ A R++ + L + ++ SV QW
Sbjct: 195 RDYQHEAVERFHEEGTVAGGSGVMVLPCGAGKTIIGIGAVARLQCATLIVTSSLTSVQQW 254
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T++++ I ++S SK+ + + TYNM+A GG +E + + R
Sbjct: 255 KSELLDKTTLEEEAIGEYSSQSKQ----VRPITIATYNMLATGGG-AEGEYRHMALFNER 309
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L + +LGLTATL+RED R TD+ LIGPK YE W
Sbjct: 310 DWGLIIYDEVHMLPAPVFRLTAELQATR-RLGLTATLIREDGRETDVFSLIGPKRYELPW 368
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + G IA ++C EV P+ Y +++ + + NPNK L+ E
Sbjct: 369 KELERQGQIAELRCEEVRVPLPDGVAHSYWTS-DARTRTRMAAENPNKTAVVRQLL---E 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ R +V L L + A L P++ G +H ERT I ++F+ + + +SK+
Sbjct: 425 RHRDKPALVIGAYLSQLKQIAASLDAPLLTGEMAHNERTHIYESFRRG-EHPVLVVSKIA 483
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A + +Q+S GSR++EAQR+GR+LR K KE A FY+LVS
Sbjct: 484 NFAVDLPDAAIAVQVSGTFGSRQEEAQRIGRLLRPK----------KEHNEAVFYTLVSE 533
Query: 385 DTQEMFYSTKRQQFLIDQGYSF 406
T+E+ Y+ KRQQF+ +QGY +
Sbjct: 534 GTKEVDYAMKRQQFMTEQGYRY 555
>gi|343524024|ref|ZP_08760984.1| type III restriction enzyme, res subunit [Actinomyces sp. oral
taxon 175 str. F0384]
gi|343399005|gb|EGV11530.1| type III restriction enzyme, res subunit [Actinomyces sp. oral
taxon 175 str. F0384]
Length = 564
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 224/385 (58%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+LVG ++ + + L L TNAVS QW
Sbjct: 197 QLRPYQSEAVESFWAGG---SGVVVLPCGAGKTLVGAASMAKSSTTTLILVTNAVSARQW 253
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +++I ++ KE V + TY ++ R + ++ + +
Sbjct: 254 KEELIRFTTLTEEEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYPHLDLLDSH 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 307 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K E L+ HE
Sbjct: 366 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPEERYR-LAACSPRKLPIIEALLARHE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V + LTE A L P+I GAT+ ER ++ AF+C ++ T+ +SKV
Sbjct: 425 ---GESALVIGQYVDQLTEIAEHLGAPVITGATTVRERQRLYDAFRCG-EIRTLVVSKVA 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V IQ+S GSR++EAQRLGRI+R K ED G++ A FY++V+
Sbjct: 481 NFSIDLPGASVAIQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVAR 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ RQ+FL +QGY++ +I
Sbjct: 531 DTADQEFAAHRQRFLAEQGYAYAII 555
>gi|229819343|ref|YP_002880869.1| type III restriction protein res subunit [Beutenbergia cavernae DSM
12333]
gi|229565256|gb|ACQ79107.1| type III restriction protein res subunit [Beutenbergia cavernae DSM
12333]
Length = 548
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG +A + + + L L TN VS QW
Sbjct: 183 RPYQSEAVESFWHGG---SGVVVLPCGAGKTLVGAAAMAQSQTTTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E + R+W
Sbjct: 240 ELLRRTSLTEDEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYTHLELLDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 293 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C E+ + Y E + + L K R L+R H+
Sbjct: 352 IEAQGYIAPADCVEIRLTLPDSARMAYATAEPEDRYR-LAATAAGKSRVVRELLRKHD-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E ++ P+I GAT+ ER ++ AF+ S D+ T+ +SKV +
Sbjct: 409 -GEQTLVIGQYLDQLEELGEQIGAPVITGATTVPERQRLFDAFR-SGDVTTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR KG + A FY++V+ DT
Sbjct: 467 SIDLPEAAVAIQVSGSFGSRQEEAQRLGRLLRPKG----------DGRTAHFYAVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++++I
Sbjct: 517 VDQDFAAHRQRFLAEQGYAYRII 539
>gi|379056789|ref|ZP_09847315.1| DNA/RNA helicase [Serinicoccus profundi MCCC 1A05965]
Length = 562
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 218/388 (56%), Gaps = 36/388 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A R + L L TN VS QW
Sbjct: 187 RPYQQQAVDGFWDGG---SGVVVLPCGAGKTLVGAGAMARSSTTTLILVTNTVSARQWRE 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE V + TY ++ K +++ R+W
Sbjct: 244 ELLRRTTLTEDEIGEYSGSRKE----IRPVTIATYQVLTLKRKGIYPHLDLLD---ARDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +FR L ++ +LGLTATLVRED R +D+ LIGPK ++A W D
Sbjct: 297 GLILYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC-----EFLIR 261
+ G+IA C EV M++ Y E ++ +F AC + + R
Sbjct: 356 IEAQGYIAPADCVEVRVTMSESMRMAYAVAEPEER---------YRFAACAPAKDDVVDR 406
Query: 262 FHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321
E+ RG +V L L + + +L P+I G T+ +R ++ + F+ ++ + +S
Sbjct: 407 LVERHRGQPTLVIGQYLDQLEQLSGRLDAPLITGETTVAQRQELFRQFREG-EITLLVVS 465
Query: 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSL 381
KV + SID+PEA+V IQ+S GSR++EAQRLGR+LR KG + A FY+L
Sbjct: 466 KVANFSIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPKG----------DGRTAHFYTL 515
Query: 382 VSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
V+ DT + ++ RQ+FL +QGY+++++
Sbjct: 516 VARDTVDAEFAAHRQRFLAEQGYAYRIV 543
>gi|334338040|ref|YP_004543192.1| helicase domain-containing protein [Isoptericola variabilis 225]
gi|334108408|gb|AEG45298.1| helicase domain-containing protein [Isoptericola variabilis 225]
Length = 559
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 146/393 (37%), Positives = 222/393 (56%), Gaps = 31/393 (7%)
Query: 22 PHAQP-----RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76
P QP RPYQ +++ + G SG++VLPCGAGK++VG A + + L L T
Sbjct: 184 PDEQPKPWEMRPYQAQAVDGFWHGG---SGVVVLPCGAGKTIVGAGAMAKSGTTTLILVT 240
Query: 77 NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEK 136
N VS QW + +T+ +D+I ++ KE V + TY ++ K
Sbjct: 241 NTVSARQWRDELVRRTTLTEDEIGEYSGARKE----IKPVTIATYQVLTTKRKGVYSH-- 294
Query: 137 IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
+E + R+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIG
Sbjct: 295 -LELLDARDWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIG 352
Query: 197 PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC 256
PK Y+A W D+ G+IA C EV + + Y E K + L P K R
Sbjct: 353 PKRYDAPWKDIETQGYIAPADCVEVRLTLPEHERMVYATAEPEDKYR-LAACAPGKNRVV 411
Query: 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLN 316
E ++ H D+++V L L E + L P+I GAT+ ER ++ QAF+ S +++
Sbjct: 412 ERIVASHPD---DQVLVIGQYLDQLEELSEHLDAPLITGATTVRERQRLFQAFR-SGEIS 467
Query: 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 376
+ +SKV + SID+PEA+V IQ+S GSR++EAQRLGRI+R K A G+ A
Sbjct: 468 RLVVSKVANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRIMRPK-------ADGR---TA 517
Query: 377 FFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
FY++V+ DT + ++ RQ+FL +QGY+++++
Sbjct: 518 HFYAVVARDTVDQEFAAHRQRFLAEQGYAYRIV 550
>gi|237785046|ref|YP_002905751.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757958|gb|ACR17208.1| putative helicase [Corynebacterium kroppenstedtii DSM 44385]
Length = 558
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 147/392 (37%), Positives = 230/392 (58%), Gaps = 26/392 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK++VG +A + K + L L TN VS QW
Sbjct: 189 QLRDYQKLAADSFWDGG---SGVVVLPCGAGKTMVGAAAMAKSKTTTLILVTNTVSGRQW 245
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +D+I ++ + KE R V + TY +V +++ + +E +R
Sbjct: 246 RDELIRRTTLTEDEIGEYSGEKKE-IRP---VTIATYQVVT---RKTRGEYRALELFDSR 298
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 299 DWGLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 357
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT+ Y E S K + L + K R ++ H
Sbjct: 358 KDIEAQGWIAPAECIEVRSMMTESERMVYATAEKSDKYR-LSACSGTKIRVARKIMAQHP 416
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ I + D L L+E KL P+I G T + +R ++ + F+ S +++T+ +SKV
Sbjct: 417 NEPTLIIGAYIDQLEELSE---KLNAPLIDGKTRNKKREELFEQFR-SGEISTLVVSKVA 472
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA++ IQ+S GSR++EAQRLGR++R K ++ +A FY++VS
Sbjct: 473 NFSIDLPEASLAIQVSGTFGSRQEEAQRLGRLMRPK----------RDGGSAHFYTVVSR 522
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSLPPPD 416
DT + Y+ RQ+FL +QGY+++++ S PD
Sbjct: 523 DTIDAEYAAHRQRFLAEQGYAYRIVNSADLPD 554
>gi|339628705|ref|YP_004720348.1| DEAD/DEAH box helicase [Sulfobacillus acidophilus TPY]
gi|379008866|ref|YP_005258317.1| type III restriction protein res subunit [Sulfobacillus acidophilus
DSM 10332]
gi|339286494|gb|AEJ40605.1| DEAD/DEAH box helicase-like protein [Sulfobacillus acidophilus TPY]
gi|361055128|gb|AEW06645.1| type III restriction protein res subunit [Sulfobacillus acidophilus
DSM 10332]
Length = 574
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 146/389 (37%), Positives = 215/389 (55%), Gaps = 25/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQE ++ +G+G A+ SG+IVLPCGAGK++VG+ R + L L T+ ++ QW
Sbjct: 188 RTYQEAAIRVFWGDGEAQRGSGVIVLPCGAGKTVVGMGVMERAQTHTLILTTSMAALHQW 247
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ DD I +++ K V +TTY M+ R +E+
Sbjct: 248 KRELLDKTTLTDDVIGEYSAAVKH----IKPVTLTTYQMLT---HRKHGDYVHFQELDRA 300
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA MFR SL ++ +LGLTATL+RED D+ LIGPK ++ W
Sbjct: 301 PWGLIIYDEVHLLPAPMFRLTASL-QARRRLGLTATLIREDGHADDVFSLIGPKRFDMPW 359
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
L G+IA C E+ + Y E ++ + L NP K L+ H
Sbjct: 360 KTLESEGWIATAHCREIRVGLEPGLRDRYASAEEPEQIR-LAAENPAKIGVIRELLTHHA 418
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q D +++ L L A +L P+I G T ER ++ QAF+ + L + +SKVG
Sbjct: 419 Q---DHVLIIGQYLSQLERLAEELHAPLITGKTPARERERLYQAFRDGQ-LPVLMVSKVG 474
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+ANV IQIS GSR++EAQRLGRILR K GG+ A FY++VS
Sbjct: 475 NFAIDLPDANVAIQISGAFGSRQEEAQRLGRILRPKSD------GGE----ATFYTIVSE 524
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
DT+E ++ KRQ FL +QGY +++ + P
Sbjct: 525 DTKEQLFAQKRQLFLAEQGYRYEIAHAAP 553
>gi|296271247|ref|YP_003653879.1| helicase domain-containing protein [Thermobispora bispora DSM
43833]
gi|296094034|gb|ADG89986.1| helicase domain protein [Thermobispora bispora DSM 43833]
Length = 551
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 217/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ ++ + G SG++VLPCGAGK++VG++A + + L L TNAVS QW
Sbjct: 183 RPYQREAAEAFWHGG---SGVVVLPCGAGKTIVGIAAMALARATTLILVTNAVSAHQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + + D+I +T KE V + TY ++ + + +E R+W
Sbjct: 240 ELLRRTALTADEIGEYTGAKKE----IRPVTIATYQVMT---TKRNGVYRHLEVFDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 293 GLIVYDEVHLLPAPIFRMTAEL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T+ Y + ++ + P K R E L+R H
Sbjct: 352 MESQGWIAPAECIEVRVTLTERERLAYAMADPDQRYR-FCSTTPAKTRVAEALVRRHA-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++I++ + L E L P+I G T ER ++ QAF+ ++ + +SKV +
Sbjct: 409 -GEQILIIGQYVDQLDELGAHLNAPVIKGETRVRERERLFQAFRDG-EIPVLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K GG A FYS+VS DT
Sbjct: 467 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK------PGGG----GARFYSIVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY++++I +
Sbjct: 517 VDQEFAAHRQRFLAEQGYAYRIIDA 541
>gi|392400142|ref|YP_006436742.1| UvrABC system protein B [Corynebacterium pseudotuberculosis Cp162]
gi|390531220|gb|AFM06949.1| UvrABC system protein B [Corynebacterium pseudotuberculosis Cp162]
Length = 549
Score = 242 bits (617), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 221/387 (57%), Gaps = 26/387 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+
Sbjct: 183 HWELRDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGR 239
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ ++I ++ + KE V + TY +V ++++ + +E
Sbjct: 240 QWRDELLRRTTLTPEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTA LVRED R D+ LIGPK Y+A
Sbjct: 293 SRDWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTAKLVREDGREGDVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W DL + GFIA +C EV MT E Y EN + + + +K RA + L+
Sbjct: 352 PWKDLEQRGFIATAECTEVRTTMTHEERMLYATAENQDRYR-IAACAESKLRAVDTLLHR 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G ++ + L E + P+I G TS+ +R ++ F+ + T+ +SK
Sbjct: 411 HQ---GLPTLIIGAYIDQLEELGARFDAPVIEGKTSNKKREELFNKFRAGH-ITTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V
Sbjct: 467 VANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGSE---AHFYSVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S D+ + Y+ RQ+FL +QGY+++++
Sbjct: 517 SRDSLDSEYAAHRQRFLAEQGYAYRIV 543
>gi|318061807|ref|ZP_07980528.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actG]
gi|318079252|ref|ZP_07986584.1| putative ATP-dependent DNA helicase [Streptomyces sp. SA3_actF]
Length = 546
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVDNFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLVLVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +E +R+W
Sbjct: 238 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + P+K R L++ H+
Sbjct: 350 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTPSKQRVARELVKQHQ-- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E +L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 -GEQTLVIGQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIV 537
>gi|365826774|ref|ZP_09368669.1| hypothetical protein HMPREF0975_00452 [Actinomyces sp. oral taxon
849 str. F0330]
gi|365265743|gb|EHM95485.1| hypothetical protein HMPREF0975_00452 [Actinomyces sp. oral taxon
849 str. F0330]
Length = 651
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 224/385 (58%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+LVG ++ R + L L TNAVS QW
Sbjct: 288 QLRPYQSEAVESFWAGG---SGVVVLPCGAGKTLVGAASMARSSTTTLILVTNAVSARQW 344
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +D+I ++ KE V + TY ++ R + ++ + +
Sbjct: 345 KEELIRFTTLTEDEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYPHLDLLDSH 397
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 398 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 456
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K + L+ HE
Sbjct: 457 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPEERYR-LAACSPRKMPIIDALLARHE 515
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V + LTE A L P+I G+T+ ER ++ AF+ S ++ T+ +SKV
Sbjct: 516 ---GESALVIGQYVDQLTEIAEHLDAPVITGSTTVRERQRLYDAFR-SGEIRTLVVSKVA 571
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V +Q+S GSR++EAQRLGRI+R K ED G++ A FY++V+
Sbjct: 572 NFSIDLPGASVAVQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVAR 621
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY++ +I
Sbjct: 622 DTADQEYAAHRQRFLAEQGYAYAII 646
>gi|374533706|gb|AEZ53766.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Scaphiopus holbrookii]
Length = 172
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 120/177 (67%), Positives = 140/177 (79%), Gaps = 8/177 (4%)
Query: 213 IANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 272
IA VQCAEVWCPM+ EF+ EY+ + +KK+ LY MNPNKFRAC+FLI+FHE+ R DKII
Sbjct: 1 IAKVQCAEVWCPMSPEFYXEYVAIK-TKKRILLYTMNPNKFRACQFLIKFHER-RNDKII 58
Query: 273 VFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332
VFADN+FAL EYA++L KP IYG TS ER +ILQ FK + +NTIF+SKVGD S D+PE
Sbjct: 59 VFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGDTSFDLPE 118
Query: 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389
ANV+IQISSH GSRRQEAQRLGR+LRAK + EEYNAFFYSLVS DT EM
Sbjct: 119 ANVLIQISSHGGSRRQEAQRLGRVLRAKKGM------VAEEYNAFFYSLVSQDTHEM 169
>gi|402815941|ref|ZP_10865533.1| putative ATP-dependent helicase [Paenibacillus alvei DSM 29]
gi|402506981|gb|EJW17504.1| putative ATP-dependent helicase [Paenibacillus alvei DSM 29]
Length = 568
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 224/397 (56%), Gaps = 25/397 (6%)
Query: 16 LNMELKPHA--QPRPYQEKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSC 71
L+ +LK Q R YQ +++ G+ + A G+IVLPCGAGK++VG++A ++
Sbjct: 174 LDFQLKEQGGFQVRDYQREAVQAFIGSAKRAAGDGVIVLPCGAGKTIVGITAMTELQSET 233
Query: 72 LCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRS 131
L L +N SV QW + +T+ D+Q+ +T SK+ V ++TY M+ + +
Sbjct: 234 LILTSNTTSVKQWKREILTRTTLLDEQVGEYTGKSKQ----VRPVTISTYQMMTYRQDKE 289
Query: 132 EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDL 191
E + + R+WGL++ DEVH++PA +FR L + +LGLTATLVRED D+
Sbjct: 290 RECQH-MHLFHERDWGLIIYDEVHLLPAPVFRTTADLQATR-RLGLTATLVREDGCERDV 347
Query: 192 NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251
LIGPK YE W +L + G+IA V C EV P+++E YL+ + K + N
Sbjct: 348 FSLIGPKRYELPWKELEQDGWIAEVDCVEVRVPLSEEGRKYYLQA-GERDKARIAGENEL 406
Query: 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKC 311
K A + +++ H + ++ L L + L P++ G T ER ++ FK
Sbjct: 407 KIEAVKRILKRHPKL---PTLIIGQYLQQLDRLSQSLSAPVLTGKTPQEEREQLYAQFKQ 463
Query: 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371
+ + +SKV + ++D+P+A V IQ+S GSR++EAQRLGR+LR K A G+
Sbjct: 464 G-SIEVLIVSKVANFAVDLPDATVAIQVSGSFGSRQEEAQRLGRLLRPK-------ADGR 515
Query: 372 EEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+ A FYS+VS DT+E Y+ KRQ+FL++QGY + +
Sbjct: 516 Q---ASFYSVVSEDTKERDYAMKRQRFLVEQGYQYAI 549
>gi|451943541|ref|YP_007464177.1| DNA helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
gi|451902928|gb|AGF71815.1| DNA helicase [Corynebacterium halotolerans YIM 70093 = DSM 44683]
Length = 555
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG ++ + + + L L TN V+ QW
Sbjct: 187 RDYQRYAADSFWEGG---SGVVVLPCGAGKTMVGAASMAKARATTLILVTNTVAGRQWKD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY +V +++ + +E +R+W
Sbjct: 244 ELLRRTTLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKTRGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA +C EV M++ Y E ++ + L K R E L+ HE Q
Sbjct: 356 LETAGYIATAECVEVRTTMSESERMVYATAETGERYR-LAASASGKLRVVEKLLARHEGQ 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L L+E + P+I G TS+ +R + F+ +++ + +SKV +
Sbjct: 415 PTLIIGAYLDQLEELSE---RFDAPIIEGRTSNRKREALFDQFRNG-EISVLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K K+ A FYS+VS DT
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK----------KDGGQAHFYSVVSRDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 521 LDAEYAAHRQRFLAEQGYAYRIV 543
>gi|345001279|ref|YP_004804133.1| helicase domain-containing protein [Streptomyces sp. SirexAA-E]
gi|344316905|gb|AEN11593.1| helicase domain protein [Streptomyces sp. SirexAA-E]
Length = 551
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 144/393 (36%), Positives = 224/393 (56%), Gaps = 29/393 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVRKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G++ +V + L E L P+I G TS+ +R K+ +AF+ +++ + +SKV +
Sbjct: 407 KGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPPPD 416
+ ++ RQ+FL +QGY+++++ + L PD
Sbjct: 516 VDQDFAAHRQRFLAEQGYAYRIVDADELLAEPD 548
>gi|302520011|ref|ZP_07272353.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
gi|302428906|gb|EFL00722.1| ATP-dependent DNA helicase [Streptomyces sp. SPB78]
Length = 546
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVDNFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +E +R+W
Sbjct: 238 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + P+K R L++ H+
Sbjct: 350 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTPSKQRVARELVKQHQ-- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E +L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 -GEQTLVIGQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIV 537
>gi|295838136|ref|ZP_06825069.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
gi|295826881|gb|EFG65124.1| ATP-dependent DNA helicase [Streptomyces sp. SPB74]
Length = 546
Score = 241 bits (615), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVDNFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +E +R+W
Sbjct: 238 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + P+K R L+R Q
Sbjct: 350 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTPSKQRVTRELVR---QH 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E +L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 406 AGEQTLVIGQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIV 537
>gi|239989681|ref|ZP_04710345.1| putative ATP-dependent DNA helicase [Streptomyces roseosporus NRRL
11379]
gi|291446696|ref|ZP_06586086.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
gi|291349643|gb|EFE76547.1| ATP-dependent DNA helicase [Streptomyces roseosporus NRRL 15998]
Length = 547
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVRKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|182436979|ref|YP_001824698.1| ATP-dependent DNA helicase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465495|dbj|BAG20015.1| putative ATP-dependent DNA helicase [Streptomyces griseus subsp.
griseus NBRC 13350]
Length = 547
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVDGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVRKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFRNG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|326777593|ref|ZP_08236858.1| helicase domain protein [Streptomyces griseus XylebKG-1]
gi|326657926|gb|EGE42772.1| helicase domain protein [Streptomyces griseus XylebKG-1]
Length = 547
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVRKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFRNG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|411007738|ref|ZP_11384067.1| ATP-dependent DNA helicase [Streptomyces globisporus C-1027]
Length = 547
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVRKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|357400022|ref|YP_004911947.1| ATP-dependent DNA helicase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|386356062|ref|YP_006054308.1| helicase domain-containing protein [Streptomyces cattleya NRRL 8057
= DSM 46488]
gi|337766431|emb|CCB75142.1| putative ATP-dependent DNA helicase [Streptomyces cattleya NRRL
8057 = DSM 46488]
gi|365806569|gb|AEW94785.1| helicase domain protein [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 550
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQRQAVESFWHGG---SGVVVLPCGAGKTLVGAGAMATAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVRRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K R E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDAERLAYATAETEEKYR-YCATTETKRRVTEALVRRH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G + +V + L E L P+I G TS+ +R K+ AF+ S +L+ + +SKV +
Sbjct: 407 KGQQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-SGELSVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 VDQDFAAHRQRFLAEQGYAYRIV 538
>gi|333026244|ref|ZP_08454308.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
gi|332746096|gb|EGJ76537.1| putative ATP-dependent DNA helicase [Streptomyces sp. Tu6071]
Length = 546
Score = 241 bits (614), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVDNFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +E +R+W
Sbjct: 238 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + P+K R L++ H+
Sbjct: 350 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTPSKQRVTRELVKQHQ-- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E +L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 -GEQTLVIGQYIDQLDELGAELDAPVIKGETSNAQREKLFNAFR-EGEISVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIV 537
>gi|365863777|ref|ZP_09403481.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
gi|364006749|gb|EHM27785.1| putative ATP-dependent DNA helicase [Streptomyces sp. W007]
Length = 547
Score = 241 bits (614), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R H+
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVRKHQ-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ +AF+ +++ + +SKV +
Sbjct: 408 -GEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|428303982|ref|YP_007140807.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428304297|ref|YP_007141122.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428245517|gb|AFZ11297.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
gi|428245832|gb|AFZ11612.1| type III restriction protein res subunit [Crinalium epipsammum PCC
9333]
Length = 556
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 228/387 (58%), Gaps = 25/387 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
Q R YQ++++ + GR SG IVLPCG+GK++VG++A ++ + L L ++ SV
Sbjct: 188 QLRDYQKEAVEVFYQAGRVHGGSGTIVLPCGSGKTMVGLAAIAAVQSNTLVLTSSLTSVR 247
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +T+ +D I ++ +SK+ A V + TY ++++ ++S+ E ++
Sbjct: 248 QWRRELLDKTTLPEDAIAEYSGESKQ----TAPVTLATYQIISY--RKSKTGEFPHFQLF 301
Query: 143 N-REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYE 201
N R WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R D+ LIGPK Y+
Sbjct: 302 NARSWGLIIYDEVHLLPAPIFRITAEL-QARRRLGLTATLIREDGREGDVFALIGPKRYD 360
Query: 202 ANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIR 261
W +L GFIA +C E+ P E EY E + + + NP K + L+
Sbjct: 361 VPWRELEGQGFIAAAECTEIRVPQDSERQMEYALAEK-RHQFRIAAENPRKLMVVQSLL- 418
Query: 262 FHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321
QQ G +I++ + L L + A P+I G TS +ER ++ + F+ ++ + LS
Sbjct: 419 --HQQIGHRILIIGEYLDQLKQIAALTGLPIITGKTSQIERDRLYEQFRDG-SISGLILS 475
Query: 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSL 381
+VG+ ++D+P+A+V+IQ+S GSR++EAQRLGRILR K + ++A FY+L
Sbjct: 476 RVGNFALDLPDADVLIQVSGKYGSRQEEAQRLGRILRPK----------NDGHSAQFYTL 525
Query: 382 VSTDTQEMFYSTKRQQFLIDQGYSFKV 408
VS T E ++ RQ FL +QGYS+++
Sbjct: 526 VSQRTCEEDFARHRQLFLAEQGYSYQI 552
>gi|116669352|ref|YP_830285.1| helicase domain-containing protein [Arthrobacter sp. FB24]
gi|116609461|gb|ABK02185.1| helicase domain protein [Arthrobacter sp. FB24]
Length = 551
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 219/385 (56%), Gaps = 30/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK+LVG +A + L L TN VS QW
Sbjct: 183 RPYQKLATENFWAGG---SGVVVLPCGAGKTLVGAAAMATSSTTTLILVTNTVSARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +++ D+I ++ KE V + TY ++ GG +E +
Sbjct: 240 ELVKRTSLTADEIGEYSGSVKE----VRPVTIATYQVLTTKRGGLYPH-----LELVDGH 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV + + Y E++ K + L + K E L+ E
Sbjct: 350 KDIEAQGYIAPADCVEVRVDLPHDERVAYAMAEDADKYR-LCATSETKTAVVEQLV---E 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q RG++++V + L E +L+ P+I G TS ER K+ AF+ ++ T+ +SKV
Sbjct: 406 QHRGEQLLVIGQYIDQLDELGERLQAPVIKGDTSVKERQKLFAAFRIG-EVQTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V IQ+S GSR++EAQRLGR+LR K ++ A FYSLV+
Sbjct: 465 NFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK----------QDGRAARFYSLVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ KRQ+FL +QGY+++++
Sbjct: 515 DTLDQDFAAKRQRFLAEQGYAYRIM 539
>gi|119961251|ref|YP_946800.1| ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
gi|403526036|ref|YP_006660923.1| DNA repair helicase RAD25 [Arthrobacter sp. Rue61a]
gi|119948110|gb|ABM07021.1| putative ATP-dependent DNA helicase [Arthrobacter aurescens TC1]
gi|403228463|gb|AFR27885.1| putative DNA repair helicase RAD25 [Arthrobacter sp. Rue61a]
Length = 552
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 146/401 (36%), Positives = 227/401 (56%), Gaps = 30/401 (7%)
Query: 13 NPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72
P L M + Q RPYQ+ + + G SG++VLPCGAGK+LVG +A + L
Sbjct: 169 QPHLIMLDESGWQLRPYQKLATENFWAGG---SGVVVLPCGAGKTLVGAAAMATSSTTTL 225
Query: 73 CLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKR 130
L TN VS QW + +++ +D+I ++ KE V + TY ++ GG
Sbjct: 226 ILVTNTVSARQWKDELLKRTSLTEDEIGEYSGAVKE----VRPVTIATYQVLTTKRGGLY 281
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITD 190
+E + +WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R +
Sbjct: 282 PH-----LELVDGHDWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGE 335
Query: 191 LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250
+ LIGPK Y+A W D+ G+IA C EV + ++ Y E++ K + L +
Sbjct: 336 VFSLIGPKRYDAPWKDIEAQGYIAPADCVEVRVDLPRDERVAYAMAEDADKYR-LCATSE 394
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
K + E L+ H +G++++V + L E A +L P+I G TS R K+ AF+
Sbjct: 395 TKTKLVEELVAVH---KGEQLLVIGQYIDQLDEIAERLDAPLIKGETSVKARQKLFDAFR 451
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
+++T+ +SKV + SID+PEA+V IQ+S GSR++EAQRLGR+LR K
Sbjct: 452 KG-EIHTLVVSKVANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK---------- 500
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS 411
++ A FYSLV+ DT + ++ KRQ+FL +QGY+++++ +
Sbjct: 501 QDGRAARFYSLVARDTLDQDFAAKRQRFLAEQGYAYRIMDA 541
>gi|421858960|ref|ZP_16291209.1| DNA or RNA helicase [Paenibacillus popilliae ATCC 14706]
gi|410831479|dbj|GAC41646.1| DNA or RNA helicase [Paenibacillus popilliae ATCC 14706]
Length = 561
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/410 (35%), Positives = 225/410 (54%), Gaps = 24/410 (5%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSL 58
+++ FR D + +E P RPYQ+ +++ G G A G+IVLPCGAGK++
Sbjct: 155 VIDHLGFR-DGESLSFRLEECPSFSLRPYQQDAVAAFIGAGMRAAGDGVIVLPCGAGKTI 213
Query: 59 VGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118
+G++A ++ L L +NA SV QW + +T++ +Q+ +T K+ V +
Sbjct: 214 IGLAAMTALQSETLILTSNATSVKQWKEELLKRTTLKSEQVGEYTGADKQ----VRPVTI 269
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY M+ + ++ E + R+WGL++ DEVH++PA +FR L + +LGLT
Sbjct: 270 STYQMMTYRQQKEGECSH-MRLFHERDWGLIIYDEVHLLPAPVFRMTADLQATR-RLGLT 327
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238
ATLVRED D+ LIGPK +E W L + G+IA V C EV P+ Y ++
Sbjct: 328 ATLVREDGCERDVFSLIGPKRFELPWRQLEEAGWIARVTCTEVRVPLPGATRIAY-QQSG 386
Query: 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATS 298
+++ + N K A LI H G ++ L L +A L+ P++ G T
Sbjct: 387 LRERARIAAENGAKIPAVRQLIARHP---GAPTLIIGQYLSQLDAFAAALQAPVLTGQTP 443
Query: 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
ER + +AFK DL + +SKV + ++D+P+A V IQ+S GSR++EAQRLGR+LR
Sbjct: 444 QAERQLLYEAFKRG-DLPVLIVSKVANFAVDLPDATVAIQVSGSYGSRQEEAQRLGRLLR 502
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
K K+ A+FY++VS T+E Y+ KRQ FL++QGY + +
Sbjct: 503 PK----------KDGRMAYFYTVVSEATKERDYALKRQLFLVEQGYRYLI 542
>gi|358446589|ref|ZP_09157133.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
gi|356607393|emb|CCE55475.1| putative ATP-dependent helicase [Corynebacterium casei UCMA 3821]
Length = 543
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/383 (37%), Positives = 224/383 (58%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 182 RDYQEYATDSFWEGG---SGVVVLPCGAGKTIVGAAAMAKAKATTLILVTNTVAGRQWRD 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 239 ELLRRTTLTENEIGEYSGEKKE----IKPVTIATYQVVT---RKTKGEYRALELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 292 GLVIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA C EV M E Y EN + + + KF A + +I H
Sbjct: 351 LEMSGFIATADCVEVRVDMNAEERMVYATAEN-RDRYRISATADAKFTAVKEIIGRHA-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++++ + L + A +L P+I+G TS+ +R K+ +AF+ D+ + +SKV +
Sbjct: 408 -GQQMLIIGGYVEQLEDIAKRLDAPLIHGKTSNAQREKLFEAFRQG-DIQVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K GG+ A FY+LV+ D+
Sbjct: 466 SIDLPEAAVAIQLSGTFGSRQEEAQRLGRLLRPKAD------GGE----ATFYTLVTRDS 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 516 IDATYALHRQRFLAEQGYAYRLL 538
>gi|152967555|ref|YP_001363339.1| helicase domain-containing protein [Kineococcus radiotolerans
SRS30216]
gi|151362072|gb|ABS05075.1| helicase domain protein [Kineococcus radiotolerans SRS30216]
Length = 557
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 221/385 (57%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG +A + + + L L TN VS QW
Sbjct: 183 RPYQSEAVDNFWNGG---SGVVVLPCGAGKTLVGAAAMAKARATTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY +V + + +E R+W
Sbjct: 240 ELLKRTSLTEDEIGEYSGARKE----IRPVTIATYQVVT---TKRKGVYPHLELFDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLILYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + Y E+ +K + L + +K R E L+ Q
Sbjct: 352 IEAQGYIAPADCVEVRVTLPDAERLAYATAEDDEKYR-LCSTSLSKSRVVEKLV---AQH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V + L + A +L P+I G T+ ER ++ AF+ ++ T+ +SKV +
Sbjct: 408 AGEPTLVIGQYIDQLDDLAARLDAPVIKGETTVKERQRLFDAFRHG-EITTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR KG + +A FY++VS DT
Sbjct: 467 SIDLPEAKVAIQVSGSFGSRQEEAQRLGRVLRPKG----------DHGSARFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
++ Y+ RQ+FL +QGY+++++ +
Sbjct: 517 KDQDYAAHRQRFLAEQGYAYRIVDA 541
>gi|168701354|ref|ZP_02733631.1| DNA repair helicase [Gemmata obscuriglobus UQM 2246]
Length = 600
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/411 (35%), Positives = 233/411 (56%), Gaps = 32/411 (7%)
Query: 16 LNMELKPHA------QPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI 67
L MEL+ A + R YQ ++ G R SG+IVLPCGAGK++VG+++ C +
Sbjct: 205 LPMELRETAASGVPFRVRDYQREAADVFHAGGDVRGGSGVIVLPCGAGKTVVGIASMCLL 264
Query: 68 KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFG 127
+K+ L L T+ +V QW + +T+ +D++ +T ++K+ V V TY ++ +
Sbjct: 265 QKNTLVLTTSITAVKQWRREIIDKTTLTEDEVKEYTGETKD----IGPVTVATYQIITYR 320
Query: 128 GKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187
++E R+WGL++ DEVH++PA +FR V + ++ +LGLTATL+RED R
Sbjct: 321 PDKTEAFPH-FGLFEQRDWGLIVYDEVHLLPAPVFR-VTAQIQARRRLGLTATLIREDGR 378
Query: 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TKEFFSEYLKKENSKKKQALY 246
D+ LIGPK Y+ W +L G+IA+ C+E+ + T EY ++ K +
Sbjct: 379 EGDVFSLIGPKKYDVPWRELETKGWIASASCSEIRVALPTDSTRMEYAVADHRAKYRIAS 438
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
E L R+H+Q ++IV L L + + PMI G+T + ER +
Sbjct: 439 ENVAKDEVVAELLKRYHDQ----RVIVIGQYLSQLKRLSERFEIPMITGSTGNAEREDLY 494
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
F+ D+ + LSKVG+ +ID+P+ANV+IQ+S GSR++EAQRLGRILR K
Sbjct: 495 GKFRRG-DVRHLVLSKVGNFAIDLPDANVLIQVSGTFGSRQEEAQRLGRILRPKS----- 548
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS---LPP 414
+G E A F++LV+ DT+E+ ++ RQ FL +QGYS++++ +PP
Sbjct: 549 -SGDGE---AHFFTLVTRDTRELDFAHHRQMFLTEQGYSYEILDERDVIPP 595
>gi|386385428|ref|ZP_10070717.1| helicase domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
gi|385667118|gb|EIF90572.1| helicase domain-containing protein [Streptomyces tsukubaensis
NRRL18488]
Length = 548
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A R K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMARAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+ H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEALVAKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|269796419|ref|YP_003315874.1| DNA/RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269098604|gb|ACZ23040.1| DNA/RNA helicase, superfamily II [Sanguibacter keddieii DSM 10542]
Length = 558
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 216/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK++VG A R + L L TN VS QW
Sbjct: 190 RPYQQQAVDGFWHGG---SGVVVLPCGAGKTIVGAGAMARSGTTTLILVTNTVSARQWRD 246
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE V + TY ++ + + +E + R+W
Sbjct: 247 ELVRRTTLTEDEIGEYSGARKE----IRPVTIATYQVLT---TKRKGVYTHLELLDARDW 299
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 300 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKD 358
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + + Y E K + L P K E L+ HE
Sbjct: 359 IEAQGYIAPADCVEVRLTLPERDRMLYATAEPEDKYR-LAACAPGKNAIVERLVALHE-- 415
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
GD +V + L E L P+I GAT+ ER ++ AF+ ++ + +SKV +
Sbjct: 416 -GDPTLVIGQYIDQLEELGEHLGAPVITGATTVKERQRLFDAFRTG-EITKLVVSKVANF 473
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR++R K A G+ A FY++V+ DT
Sbjct: 474 SIDLPEASVAIQVSGSFGSRQEEAQRLGRVMRPK-------ADGR---TAHFYAVVARDT 523
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 524 VDQEFAAHRQRFLAEQGYAYRIV 546
>gi|296118323|ref|ZP_06836904.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
DSM 20306]
gi|295968881|gb|EFG82125.1| putative ATP-dependent DNA helicase [Corynebacterium ammoniagenes
DSM 20306]
Length = 543
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 223/383 (58%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 182 RDYQEYATESFWEGG---SGVVVLPCGAGKTIVGAAAMAKAQATTLILVTNTVAGRQWRD 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 239 ELLRRTTLTENEIGEYSGEKKE----IKPVTIATYQVVT---RKTKGEYRALELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 292 GLVIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA C EV M E Y EN + + + KF A +I H QQ
Sbjct: 351 LEMSGYIATADCVEVRVDMNPEERMVYATAEN-RDRYRISATADAKFEAVREIIDKHAQQ 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++++ + L + A +L P+I+G TS+ ER K+ AF+ ++ + +SKV +
Sbjct: 410 ---QMLIIGGYVEQLEDIAARLDAPLIHGRTSNAEREKLFDAFRNG-EIQVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K GG+ A FY+LV+ D+
Sbjct: 466 SIDLPEAAVAIQLSGTFGSRQEEAQRLGRLLRPKAD------GGE----ATFYTLVTRDS 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 516 IDATYALHRQRFLAEQGYAYRLL 538
>gi|376248066|ref|YP_005140010.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC04]
gi|376250862|ref|YP_005137743.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC03]
gi|372112366|gb|AEX78425.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC03]
gi|372114634|gb|AEX80692.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC04]
Length = 554
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 225/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLV---AQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ + LTE +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 412 TGQPTLIIGAYVDQLTEIGERLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADIP 549
>gi|376256675|ref|YP_005144566.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
VA01]
gi|372119192|gb|AEX82926.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
VA01]
Length = 554
Score = 239 bits (611), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 225/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLV---AQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ + LTE +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 412 TGQPTLIIGAYVDQLTEIGERLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADIP 549
>gi|320531739|ref|ZP_08032671.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
gi|320136044|gb|EFW28060.1| DEAD/DEAH box helicase [Actinomyces sp. oral taxon 171 str. F0337]
Length = 560
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 223/385 (57%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+LVG ++ + + L L TN VS QW
Sbjct: 197 QLRPYQTEAVESFWAGG---SGVVVLPCGAGKTLVGAASMAKSSTTTLILVTNTVSARQW 253
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +++I ++ KE V + TY ++ R + ++ + +
Sbjct: 254 KEELMRFTTLTEEEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYPHLDLLDSH 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 307 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K + L+ HE
Sbjct: 366 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPEERYR-LAASSPRKLPIIDALLARHE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V + LTE A L P+I G+T+ ER ++ AF+ S D+ T+ +SKV
Sbjct: 425 ---GESALVIGQYVDQLTEIAEHLGAPVITGSTTVRERQRLYDAFR-SGDIRTLVVSKVA 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A+V +Q+S GSR++EAQRLGRI+R K ED G++ A FY++V+
Sbjct: 481 NFSIDLPGASVAVQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVAR 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY++ +I
Sbjct: 531 DTADQEYAAHRQRFLAEQGYAYAII 555
>gi|145479837|ref|XP_001425941.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393013|emb|CAK58543.1| unnamed protein product [Paramecium tetraurelia]
Length = 645
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 158/466 (33%), Positives = 250/466 (53%), Gaps = 42/466 (9%)
Query: 3 EEYDFRND--NVNPDLNMEL-----KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAG 55
+E+D+ D N D+ +L K Q +Q ++L K+F N +A SG+I+LPCGAG
Sbjct: 189 QEFDYLKDLENTKQDIQKKLQQFRMKAIYQLYSHQNRALKKIFQNDKAHSGVIILPCGAG 248
Query: 56 KSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG 115
K+L+G++ A +IK+ L + V QW F ++ + + + +E G
Sbjct: 249 KTLLGINVALKIKRKTLIICDQVNDVYQWQKSFIKFTEMDKNNLAIILRTQQEVPMAVLG 308
Query: 116 ----VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171
+V+T +M++ + K I+ + EW LL+MDEVH +PA IS K+
Sbjct: 309 REHIIVITNKDMIS-------SNRKDIKHVTTLEWPLLIMDEVHGLPAEQINAEISKLKA 361
Query: 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT---KE 228
+ K+GLTAT R+D +I ++ + +GPKL+E+ +DL + G+++ + C +V+ M K+
Sbjct: 362 NMKIGLTATPYRQDNKIKEIFYKVGPKLHESMIVDLKQMGYVSKIYCIQVYVGMQDLYKQ 421
Query: 229 FFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFAD--NLFALTEYAM 286
+ EY + N LY MNP KF + LI H + R DKI+VF + N A T
Sbjct: 422 KYEEYRRVNNQFVTNTLYQMNPKKFEVLQSLINIH-RTRKDKILVFCEKVNKLADTGTLE 480
Query: 287 KLRK----PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
K K P+I ER+ I + ++ + L+ I ++ D +D+P ANV IQIS +
Sbjct: 481 KFAKLNNCPIISQKVEQTERSAIYKLYQEDK-LDVIIFGQIADQGLDLPSANVGIQISFN 539
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
S RQE QR+GRI R K E+++ EY+ FFYS+V+ T+E+ +RQ +I+Q
Sbjct: 540 FKSVRQEFQRMGRIQRKK---ENQIG----EYDCFFYSIVTKGTREVEIQFERQIAVINQ 592
Query: 403 GYSFKVITS--LPPPDSGADLSYHR---LDE-QLALLGKVLSAGDD 442
GY +++I++ L PP S AD +DE Q +L GDD
Sbjct: 593 GYPYEIISADELKPPQSEADKKLQLDKIVDEMQRKVLETCTQKGDD 638
>gi|227548339|ref|ZP_03978388.1| DNA helicase [Corynebacterium lipophiloflavum DSM 44291]
gi|227079657|gb|EEI17620.1| DNA helicase [Corynebacterium lipophiloflavum DSM 44291]
Length = 547
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 226/385 (58%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK++VG ++ + K + L L TN V+ QW
Sbjct: 184 QLRDYQAYAAESFWEGG---SGVVVLPCGAGKTIVGAASMAQAKTTTLILVTNTVAGRQW 240
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+Q ++I ++ + KE V + TY +V ++++ + +E +R
Sbjct: 241 RDELLRRTTLQPEEIGEYSGERKE----IRPVTIATYQVVT---RKTKGEYRALELFDSR 293
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 294 DWGLIIYDEVHLLPAPVFRMAADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPW 352
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L G+IA +C EV ++ + Y E +K++ + + K + L+ H+
Sbjct: 353 KELEMAGYIATAECVEVRTSLSADERMAYATAE-TKQRYRIAATSRGKDAVVDILLARHQ 411
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+++++ + L A + P+++G TS +R + AF+ S +++T+ +SKV
Sbjct: 412 ---GEQVLIIGAYVEQLEGIAARTNAPLVHGTTSTKKREEAFDAFR-SGEISTLVVSKVA 467
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V IQ+S GSR++EAQRLGR+LR K GG A FY++V+
Sbjct: 468 NFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GALFYTVVAR 517
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ +RQ+FL +QGY+++++
Sbjct: 518 DTLDAEYAMRRQRFLAEQGYAYRLV 542
>gi|227542367|ref|ZP_03972416.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181565|gb|EEI62537.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 555
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 220/381 (57%), Gaps = 26/381 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + G SG++VLPCGAGK++VG +A ++K + L L TN V+ QW
Sbjct: 187 RDYQRYARDSFIAGG---SGVVVLPCGAGKTIVGAAAMAKLKTTTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRSLELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA+ +C E+ MT+ Y E++ + + L K + L++ H +
Sbjct: 356 LEAQGFIASAECVEIRVTMTESERMVYATAESADRYR-LATNASGKMSVLKQLVKMHADE 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L + E + P+I G TS +R ++ F+ S ++ T+ +SKV +
Sbjct: 415 PTLIIGAYIDQLEEIGE---AIGAPVIEGKTSTKKREELFDKFR-SGEITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K GG +A FYS+V+ DT
Sbjct: 471 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKAD------GG----SATFYSIVTRDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFK 407
+ Y+ RQ+FL +QGY+++
Sbjct: 521 LDAHYAAHRQRFLAEQGYAYR 541
>gi|376292821|ref|YP_005164495.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC02]
gi|372110144|gb|AEX76204.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC02]
Length = 554
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 142/389 (36%), Positives = 224/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLV---AQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ + LTE +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 412 TGQPTLIIGAYVDQLTEIGERLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYEAHRQRFLAEQGYAYRIIDAADIP 549
>gi|227487728|ref|ZP_03918044.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227092230|gb|EEI27542.1| ATP-dependent DNA helicase [Corynebacterium glucuronolyticum ATCC
51867]
Length = 555
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/381 (37%), Positives = 220/381 (57%), Gaps = 26/381 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + G SG++VLPCGAGK++VG +A ++K + L L TN V+ QW
Sbjct: 187 RDYQRYARDSFIAGG---SGVVVLPCGAGKTIVGAAAMAKLKTTTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRSLELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA+ +C E+ MT+ Y E++ + + L K + L++ H +
Sbjct: 356 LEAQGFIASAECVEIRVTMTESERMVYATAESADRYR-LATNASGKMSVLKQLVKMHADE 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L + E + P+I G TS +R ++ F+ S ++ T+ +SKV +
Sbjct: 415 PTLIIGAYIDQLEEIGE---AIGAPVIEGKTSTKKREELFDKFR-SGEITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K GG +A FYS+V+ DT
Sbjct: 471 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKAD------GG----SATFYSIVTRDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFK 407
+ Y+ RQ+FL +QGY+++
Sbjct: 521 LDAHYAAHRQRFLAEQGYAYR 541
>gi|253575758|ref|ZP_04853093.1| type III restriction protein res subunit [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251844801|gb|EES72814.1| type III restriction protein res subunit [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 564
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 226/383 (59%), Gaps = 22/383 (5%)
Query: 27 RPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
RPYQ+++++ G G SG++VLPCGAGK++VG++A R + L L +N SV QW
Sbjct: 194 RPYQQEAVAAFAGKAGEGGSGVVVLPCGAGKTVVGLAAMERFQCETLILTSNVTSVRQWI 253
Query: 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE 145
+ +T+ + + ++ + K+ V V+TY ++ R EE K + + R+
Sbjct: 254 SEMISKTTLPPEAVGEYSGEKKQ----VKPVTVSTYQILTHRA-RKEEGFKHMSLFQERD 308
Query: 146 WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL 205
WGL++ DEVH++PA +FR + + +LGLTATL+RED D+ LIGPK Y+ W
Sbjct: 309 WGLIIYDEVHLLPAPIFRATADIQATR-RLGLTATLIREDGCERDVFSLIGPKRYDVPWR 367
Query: 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
L + GFIA V C E+ M + ++Y + E ++K + NP K E + R ++
Sbjct: 368 TLEESGFIAQVDCQEIRVAMPEPQQNQYARAEG-REKFRIAAENPYK---NEIVRRLLDR 423
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
R ++++ L L A +L P+I G+T ER+++ QAF+ ++ + +SKV +
Sbjct: 424 HRDRQVLIIGQYLDQLQSIAAELHVPLITGSTPQAERSRLFQAFREG-EIPVLAVSKVAN 482
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
++D+P+A+V IQIS GSR++EAQRLGRILR K GG+ A+FY+LVS +
Sbjct: 483 FAVDLPDASVAIQISGSFGSRQEEAQRLGRILRPK------RDGGR----AYFYTLVSEN 532
Query: 386 TQEMFYSTKRQQFLIDQGYSFKV 408
T+E ++ +RQ FL++QGY + V
Sbjct: 533 TREQEFALRRQLFLLEQGYEYAV 555
>gi|374533702|gb|AEZ53764.1| excision repair cross-complementing rodent repair deficiency,
complementation group 3, partial [Spea multiplicata]
Length = 171
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 139/176 (78%), Gaps = 8/176 (4%)
Query: 214 ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIV 273
A VQCAEVWCPM+ EF+ EY+ + +KK+ LY MNPNKFRAC+FLI+FHE+ R DKIIV
Sbjct: 1 AKVQCAEVWCPMSPEFYREYVAIK-TKKRILLYTMNPNKFRACQFLIKFHER-RNDKIIV 58
Query: 274 FADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA 333
FADN+FAL EYA++L KP IYG TS ER +ILQ FK + +NTIF+SKVG S D+PEA
Sbjct: 59 FADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNPKINTIFISKVGXTSFDLPEA 118
Query: 334 NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389
NV+IQISSH GSRRQEAQRLGR+LRAK + EEYNAFFYSLVS DTQEM
Sbjct: 119 NVLIQISSHGGSRRQEAQRLGRVLRAKKGM------VAEEYNAFFYSLVSQDTQEM 168
>gi|359150058|ref|ZP_09182930.1| ATP-dependent DNA helicase [Streptomyces sp. S4]
Length = 540
Score = 239 bits (609), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 176 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKS 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 233 ELIKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 285
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 286 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 344
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E+ +K + +K + E L+R H
Sbjct: 345 IEAQGYIAPADCVEVRVNLTESERLAYATAESDEKYR-FCATTASKQKVTEALVRKHA-- 401
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ AF+ +L+ + +SKV +
Sbjct: 402 -GEQTLVIGQYIDQLDELGEHLDAPVIKGDTSNAQREKLFDAFRTG-ELSVLVVSKVANF 459
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 460 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 509
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 510 IDQDFAAHRQRFLAEQGYAYRIV 532
>gi|386845478|ref|YP_006263491.1| DNA excision repair protein ERCC-3 [Actinoplanes sp. SE50/110]
gi|359832982|gb|AEV81423.1| DNA excision repair protein ERCC-3 [Actinoplanes sp. SE50/110]
Length = 548
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 148/385 (38%), Positives = 225/385 (58%), Gaps = 30/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RSYQQEAVDGFWAGG---SGVVVLPCGAGKTLVGAAAMATAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +T+ +++I ++ + KE V + TY ++ GG + ++ R
Sbjct: 240 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVLTARRGGNFTH-----LDLFGAR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV +T++ Y + ++ +A K + L+ H
Sbjct: 350 KDIEAQGWIAPAECVEVRVTLTEQERMAYAVTDAEERYKAAATAR-TKLPVVKALVARHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q++ I F D L L EY L P++ G+TS+ ER ++ AF+ S +L T+ LSKVG
Sbjct: 409 QEQVLVIGGFLDQLHTLGEY---LDAPIVEGSTSNKERERLFDAFR-SGELRTLVLSKVG 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+VS
Sbjct: 465 NFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPKGD-------GRQ---AHFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY++ ++
Sbjct: 515 DTIDTEYAAHRQRFLAEQGYAYTIV 539
>gi|348173118|ref|ZP_08880012.1| ATP-dependent DNA helicase [Saccharopolyspora spinosa NRRL 18395]
Length = 553
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 146/399 (36%), Positives = 225/399 (56%), Gaps = 31/399 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ +++ + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQAQAVQSFWAGG---SGVVVLPCGAGKTLVGAAAMAEAQATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ DD+I ++ + KE V + TY ++ +RS+ + +E +R
Sbjct: 238 KRELIERTSLTDDEIGEYSGEKKE----IRPVTIATYQVIT---RRSKGEYRHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV +T EY E ++ Y M + +
Sbjct: 350 KDIEAQGWIAPAECIEVRVTLTDNERLEYATAEADER----YKMCSTARTKAPVVKAILD 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ G+ +V L L E L P++ G+T + ER ++ AF+ ++N + +SKV
Sbjct: 406 RHPGEPALVIGAYLEQLHELGEALDAPIVEGSTKNKEREELFDAFRRG-EINRLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K K + A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAKRK----------QAHFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS---LPP--PDSG 418
DT + Y+ RQ+FL +QGY+++++ + L P PD G
Sbjct: 515 DTLDTDYAAHRQRFLAEQGYAYRIVDADDLLGPAIPDIG 553
>gi|345857196|ref|ZP_08809642.1| putative DNA HELICASE ERCC3 [Desulfosporosinus sp. OT]
gi|344329735|gb|EGW41067.1| putative DNA HELICASE ERCC3 [Desulfosporosinus sp. OT]
Length = 569
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 145/398 (36%), Positives = 221/398 (55%), Gaps = 26/398 (6%)
Query: 22 PHAQP---RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76
P +P R YQ+++++ G R SG++VLPCGAGK+++G+ A ++ L L T
Sbjct: 191 PKGEPIALRSYQQEAVATFHQQGSVRGGSGVLVLPCGAGKTVIGMGAMIELQCETLILTT 250
Query: 77 NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEK 136
N SV QW + +T++ Q+ +T + KE V V TY ++ + + +
Sbjct: 251 NNSSVKQWLRELSDKTTLEAAQMGEYTGEKKE----ICPVTVATYQIITHRSRGAADFNH 306
Query: 137 IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
+ WGL++ DEVH++PA +FR L ++ +LGLTATLVRED + ++ LIG
Sbjct: 307 -FHLFNEKNWGLIIYDEVHLLPAPVFRATADL-QAKRRLGLTATLVREDGKEDEVFTLIG 364
Query: 197 PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC 256
PK + W L G+IA +C E PM+++ +Y E K+K L NP K
Sbjct: 365 PKKMDVPWKVLESQGWIATAECMEWRVPMSRDRRMDYALAEE-KEKFRLAAENPRKLDKV 423
Query: 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLN 316
L+ H R D ++V + L A +L P+I G T ER ++ + F+ R L+
Sbjct: 424 SELMARH---RDDLVLVIGQYVRQLEMLARELSAPLITGKTPQRERERLYEEFRSGR-LH 479
Query: 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 376
+ +SKV + +ID+P+ANV IQ+S GSR++EAQRLGRILR K + E NA
Sbjct: 480 CLVVSKVANFAIDLPDANVAIQVSGTFGSRQEEAQRLGRILRPK----------QGEGNA 529
Query: 377 FFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPP 414
+FYSLVS DT+E ++ RQ FL +QGY++K++ P
Sbjct: 530 YFYSLVSKDTKEQEFAMHRQLFLTEQGYAYKIMIEEDP 567
>gi|433456109|ref|ZP_20414167.1| helicase domain-containing protein [Arthrobacter crystallopoietes
BAB-32]
gi|432196698|gb|ELK53134.1| helicase domain-containing protein [Arthrobacter crystallopoietes
BAB-32]
Length = 553
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 225/395 (56%), Gaps = 32/395 (8%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ+ + + G SG++VLPCGAGK+LVG +A + L L TN VS QW
Sbjct: 185 QLRPYQQVAAENFWAGG---SGVVVLPCGAGKTLVGAAAMATSSTTTLILVTNTVSARQW 241
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIR 142
+ +T+++D+I ++ KE V + TY ++ GG +E +
Sbjct: 242 KDELLRRTTLREDEIGEYSGAVKE----VRPVTIATYQVLTMRRGGIYPH-----LELVD 292
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A
Sbjct: 293 GHDWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDAREGEVFSLIGPKRYDA 351
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV + ++ Y +++ K + L + K E L+
Sbjct: 352 PWKDIEAQGYIAPADCVEVRVDLPRDERVAYAMADDADKYR-LCAASDTKSGVVEQLVAA 410
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H RG++++V + L + A +L P+I G TS ER ++ F+ ++T+ +SK
Sbjct: 411 H---RGEQLLVIGQYIDQLDDLAQRLDAPVIKGGTSVKERQRLFDEFRAG-SIHTLVVSK 466
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V IQ+S GSR++EAQRLGR+LR K A G+ A FY++V
Sbjct: 467 VANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK-------ADGR---AARFYTVV 516
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVITS--LPPP 415
+ DT + ++ KRQ+FL +QGY++ ++ + +P P
Sbjct: 517 ARDTLDQDFAAKRQRFLAEQGYAYTIMDAQDVPRP 551
>gi|19552043|ref|NP_600045.1| helicase [Corynebacterium glutamicum ATCC 13032]
gi|62389706|ref|YP_225108.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|145294985|ref|YP_001137806.1| hypothetical protein cgR_0930 [Corynebacterium glutamicum R]
gi|417972067|ref|ZP_12612982.1| hypothetical protein CgS9114_13620 [Corynebacterium glutamicum
S9114]
gi|418245902|ref|ZP_12872302.1| hypothetical protein KIQ_10406 [Corynebacterium glutamicum ATCC
14067]
gi|21323582|dbj|BAB98209.1| DNA or RNA helicases of superfamily II [Corynebacterium glutamicum
ATCC 13032]
gi|41325041|emb|CAF19522.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
ATCC 13032]
gi|140844905|dbj|BAF53904.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344043556|gb|EGV39245.1| hypothetical protein CgS9114_13620 [Corynebacterium glutamicum
S9114]
gi|354509978|gb|EHE82907.1| hypothetical protein KIQ_10406 [Corynebacterium glutamicum ATCC
14067]
gi|385142963|emb|CCH24002.1| putative helicase [Corynebacterium glutamicum K051]
Length = 557
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 214/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK++VG ++ R + + L L TN V+ QW
Sbjct: 187 RDYQQMAADSFWEGG---SGVVVLPCGAGKTMVGAASMARAQATTLILVTNTVAGRQWKD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY +V +R++ K +E +R+W
Sbjct: 244 ELLRRTTLTEDEIGEYSGERKE----IRPVTIATYQVVT---RRTKGEYKALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA C E+ MT Y E++ + Y + + + E+
Sbjct: 356 LESQGFIATADCVEIRSTMTDAERMVYATAESADR----YRLAATAHTKVAVVRKLLEEH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ L L E + P+I G T + +R + F+ S L+ + +SKV +
Sbjct: 412 AGKPTLIIGAYLDQLEELGAEFNAPVIDGKTPNKKREALFDQFR-SGSLSVLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K G E A FYS+VS DT
Sbjct: 471 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKHD-------GSE---AHFYSIVSRDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 521 LDTEYAAHRQRFLAEQGYAYRIL 543
>gi|297193652|ref|ZP_06911050.1| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
25486]
gi|297151855|gb|EDY65705.2| ATP-dependent DNA helicase [Streptomyces pristinaespiralis ATCC
25486]
Length = 551
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A R K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMARAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K R E L+R H Q
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYR-FCATTATKRRVTEQLVRKHAGQ 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L E+ L P+I G T + +R K+ AF+ +++ + +SKV +
Sbjct: 410 QTLVIGQYIDQLDELGEH---LDAPVIKGETPNTQREKLFDAFRPG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA + IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATIAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHKAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|357411964|ref|YP_004923700.1| helicase domain-containing protein [Streptomyces flavogriseus ATCC
33331]
gi|320009333|gb|ADW04183.1| helicase domain protein [Streptomyces flavogriseus ATCC 33331]
Length = 547
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVDGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVIYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +++K K + E L+R H+
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAE-AEEKYRFCATTDTKRKVTEALVRKHQ-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 408 -GEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFREG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|427422083|ref|ZP_18912266.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
gi|425757960|gb|EKU98814.1| DNA/RNA helicase, superfamily II [Leptolyngbya sp. PCC 7375]
Length = 557
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 220/384 (57%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+K+ + G A+ SG+IVLPCGAGK++VG++ I++ L L +N SV QW
Sbjct: 191 RSYQQKAADLFYQAGHAKGGSGVIVLPCGAGKTMVGMATMAAIQQHTLILTSNLTSVRQW 250
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D I ++ D K V + TY ++ + + EE + + +
Sbjct: 251 RRELLDKTSLTEDHIAEYSGDRK----ATGPVTLATYQILTYRAHKDEEF-RHLGLFDQQ 305
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR +L ++ +LGLTATL+RED D+ LIGPK Y+ W
Sbjct: 306 DWGLIIYDEVHLLPAPVFRITATL-QARRRLGLTATLIREDGHEGDVFALIGPKRYDVPW 364
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL GFIA C E+ ++ +Y +++ + NP K + L+ E
Sbjct: 365 RDLETQGFIATAHCTEIRIAQPDDWQMDYAMAPR-RQQFRIAAENPRKLEVVKTLL---E 420
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
++ G +I++ + + L A + P+I G TS +R KI AF+ D++ + LS+VG
Sbjct: 421 KEAGHRILIIGEYISQLKSIAALVDFPLITGKTSQADREKIYGAFRQG-DVSGLVLSRVG 479
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A+V+IQ+S GSR++EAQRLGRILR K + NA FY+LVS+
Sbjct: 480 NFALDLPDADVLIQVSGKYGSRQEEAQRLGRILRPK----------QTGNNAQFYTLVSS 529
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ FL +QGY +++
Sbjct: 530 RTCEEDFAQHRQLFLTEQGYRYQI 553
>gi|296128585|ref|YP_003635835.1| helicase domain-containing protein [Cellulomonas flavigena DSM
20109]
gi|296020400|gb|ADG73636.1| helicase domain protein [Cellulomonas flavigena DSM 20109]
Length = 548
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 216/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ F G SG++VLPCGAGK+LVG A R + L L TN VS QW
Sbjct: 183 RPYQQQAVDGFFHGG---SGVVVLPCGAGKTLVGAGAMARSSTTTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E + R+W
Sbjct: 240 ELVKRTSLTEDEIGEYSGTRKE----VRPVTIATYQVLT---TKRKGVYTHLELLDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK ++A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRFDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV + Y E +K + L K R E L+ H
Sbjct: 352 IESQGYIAPAECVEVRLTLPDHERMTYATAEPEEKYR-LAATAAGKNRVVESLVAKHA-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E A L +I G T+ ER ++ AF+ ++ T+ +SKV +
Sbjct: 409 -GEQTLVIGQYLDQLHELAEHLGAELITGETTVRERQRLFDAFRTG-EITTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGRI+R K A GK A FY++V+ DT
Sbjct: 467 SIDLPEASVAIQVSGSFGSRQEEAQRLGRIMRPK-------ADGK---TAHFYTVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++ ++
Sbjct: 517 VDQDFAAHRQRFLAEQGYAYTIV 539
>gi|310642758|ref|YP_003947516.1| DNA or RNA helicase of superfamily ii [Paenibacillus polymyxa SC2]
gi|386041839|ref|YP_005960793.1| tFIIH basal transcription factor complex helicase XPB subunit DNA
excision repair protein ERCC-3 [Paenibacillus polymyxa
M1]
gi|309247708|gb|ADO57275.1| DNA or RNA helicase of superfamily II [Paenibacillus polymyxa SC2]
gi|343097877|emb|CCC86086.1| tFIIH basal transcription factor complex helicase XPB subunit DNA
excision repair protein ERCC-3 [Paenibacillus polymyxa
M1]
Length = 607
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 221/385 (57%), Gaps = 22/385 (5%)
Query: 25 QPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
Q R YQ K+ G +G SG++VLPCGAGK+++G++ R++ L L +N +SV Q
Sbjct: 219 QLRDYQVKAADAFEGTDGLGGSGVLVLPCGAGKTVIGMAVMNRLQCEVLILTSNTISVRQ 278
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN 143
W + K + I D I ++ KE + V TY ++ + E E + + +
Sbjct: 279 WIEELKQKTNIPVDSIGEYSGQKKE----VRPITVATYQILTHRRNKDGEFEHM-KLLSE 333
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R+WGL++ DEVH++PA +FR + + +LGLTATLVRED D+ LIGPK Y+
Sbjct: 334 RKWGLIIYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGCERDVFSLIGPKRYDMP 392
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + G+IA V C E+ PMT + + ++ E +++ + NP K A L+
Sbjct: 393 WKELERQGWIAQVDCVELRLPMTADLLEQSMRAEG-RQQYRIAAENPAKLEAVRSLV--- 448
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E+ +G ++ L L + A +L P+I G+ + ER + AF+ ++ T+ +SKV
Sbjct: 449 EKHKGIPTLIIGQYLDQLRKLAQELDVPLITGSMTQSERVRWFDAFRKG-NIQTLLVSKV 507
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+A V I++S GSR++EAQRLGRILR K + A+FY+LV+
Sbjct: 508 ANFAVDLPDAAVAIEVSGSFGSRQEEAQRLGRILRPK----------PGDNKAYFYALVT 557
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
+++EM ++ +RQ FLI+QGY + +
Sbjct: 558 ENSKEMDFAARRQLFLIEQGYEYAI 582
>gi|254393413|ref|ZP_05008555.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294814127|ref|ZP_06772770.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|326442528|ref|ZP_08217262.1| putative ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC
27064]
gi|197707042|gb|EDY52854.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
gi|294326726|gb|EFG08369.1| ATP-dependent DNA helicase [Streptomyces clavuligerus ATCC 27064]
Length = 545
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQRQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVRRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + +K + E L+ H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTASKRKVTEALVARH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFRAG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|38233371|ref|NP_939138.1| ATP-dependent DNA helicase [Corynebacterium diphtheriae NCTC 13129]
gi|375290427|ref|YP_005124967.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
241]
gi|376245260|ref|YP_005135499.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC01]
gi|376289918|ref|YP_005162165.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|38199631|emb|CAE49290.1| Putative ATP-dependent DNA helicase [Corynebacterium diphtheriae]
gi|371580098|gb|AEX43765.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
241]
gi|372103314|gb|AEX66911.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae C7
(beta)]
gi|372107890|gb|AEX73951.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
HC01]
Length = 554
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 225/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ H Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLVAQHTGQ 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L + E +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 415 PTLIIGAYVDQLAEIGE---RLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADLP 549
>gi|421739802|ref|ZP_16178094.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
gi|406691812|gb|EKC95541.1| DNA/RNA helicase, superfamily II, partial [Streptomyces sp. SM8]
Length = 563
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 222/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 199 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKS 255
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE R V + TY ++ + + +E +R+W
Sbjct: 256 ELIKRTSLTEDEIGEYSGTKKE-IR---PVTIATYQVLT---TKRKGIYPHLELFDSRDW 308
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 309 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 367
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E+ +K + +K + E L+R H
Sbjct: 368 IEAQGYIAPADCVEVRVNLTESERLAYATAESDEKYR-FCATTASKQKVTEALVRKHA-- 424
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ AF+ +L+ + +SKV +
Sbjct: 425 -GEQTLVIGQYIDQLDELGEHLDAPVIKGDTSNAQREKLFDAFRTG-ELSVLVVSKVANF 482
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 483 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 532
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 533 IDQDFAAHRQRFLAEQGYAYRIV 555
>gi|398783543|ref|ZP_10547006.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
gi|396995855|gb|EJJ06859.1| ATP-dependent DNA helicase [Streptomyces auratus AGR0001]
Length = 550
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQQQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + ++ E L+R HE
Sbjct: 351 IESQGYIAPADCVEVRVNLTETERLAYATAETEEKYRYCATTASKQY-VTEALVRRHE-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G T++ +R K+ AF+ +++ + +SKV +
Sbjct: 408 -GEQTLVIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|291453278|ref|ZP_06592668.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
gi|291356227|gb|EFE83129.1| ATP-dependent DNA helicase [Streptomyces albus J1074]
Length = 545
Score = 238 bits (606), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKS 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 238 ELIKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E+ +K + +K + E L+R H
Sbjct: 350 IEAQGYIAPADCVEVRVNLTESERLAYATAESDEKYR-FCATTASKQKVTEALVRKHA-- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ AF+ +L+ + +SKV +
Sbjct: 407 -GEQTLVIGQYIDQLDELGEHLDAPVIKGDTSNAQREKLFDAFRTG-ELSVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIV 537
>gi|376253869|ref|YP_005142328.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
PW8]
gi|372116953|gb|AEX69423.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
PW8]
Length = 554
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 224/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLV---AQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ + L E +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 412 TGQPTLIIGAYIDQLAEIGERLHTPVVDGSTSNKKREELFAAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADLP 549
>gi|398813510|ref|ZP_10572205.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
gi|398038487|gb|EJL31647.1| DNA/RNA helicase, superfamily II [Brevibacillus sp. BC25]
Length = 554
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 136/387 (35%), Positives = 217/387 (56%), Gaps = 23/387 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ++++ + G SG++VLPCGAGK+++G+ A C+++ + L L TN SV QW
Sbjct: 185 RSYQKEAVDAFYSGGAVTGGSGVLVLPCGAGKTVIGLGAICQLQTATLILTTNTTSVRQW 244
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + + + +T D+KE + V TY ++ + +E+ ++ R
Sbjct: 245 IAELLDKTGLDPNMVGEYTGDNKE----VKPITVATYQILTY-RPTAEDDFPHLKLFSER 299
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR V S ++ +LGLTATLVRED R D+ LIGPK YE W
Sbjct: 300 DWGLIIYDEVHLLPAPIFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPKKYEVPW 358
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+ + G+IA C E+ P ++ Y +++K + NP K L+ H
Sbjct: 359 KVMEEQGWIAEAHCREIRLPFEPKWREAY-AHATARQKFRIAAENPKKLEVVRELLERHA 417
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D++++ + L + A L+ P+I G ER + FK ++ + +SKV
Sbjct: 418 H---DRVLIIGQYIDQLEQMASALQLPLITGKVPDKERELLYTQFKKG-EITRLIVSKVA 473
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+ANV IQIS GSR++EAQRLGRILR K ++ A FY+LV+
Sbjct: 474 NFAVDLPDANVAIQISGTYGSRQEEAQRLGRILRPK----------TDDNTAHFYTLVTR 523
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT+E +S RQ FL++QGY + +I S
Sbjct: 524 DTREQEFSLHRQLFLVEQGYPYDIIES 550
>gi|375292652|ref|YP_005127191.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|376242398|ref|YP_005133250.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
CDCE 8392]
gi|371582323|gb|AEX45989.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
INCA 402]
gi|372105640|gb|AEX71702.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
CDCE 8392]
Length = 554
Score = 238 bits (606), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 225/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ H Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLVAQHTGQ 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L + E +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 415 PTLIIGAYVDQLAEIGE---RLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADIP 549
>gi|376284299|ref|YP_005157509.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
31A]
gi|371577814|gb|AEX41482.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
31A]
Length = 554
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 143/389 (36%), Positives = 225/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RDYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ H Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLVAQHTGQ 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I + D L + E +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 415 PTLIIGAYVDQLAEIGE---RLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADLP 549
>gi|419860381|ref|ZP_14383022.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
gi|387982775|gb|EIK56274.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
bv. intermedius str. NCTC 5011]
Length = 554
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 224/389 (57%), Gaps = 26/389 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 187 RNYQRMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 244 ELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEYRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GFIA +C EV MT+ Y EN + + L +K RA + L+ Q
Sbjct: 356 LETQGFIATAECTEVRTTMTESERMVYATAENQDRYR-LAACAASKLRAVDKLV---AQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ + L E +L P++ G+TS+ +R ++ AF+ ++ T+ +SKV +
Sbjct: 412 TGQPTLIIGAYIDQLAEIGERLHTPVVDGSTSNKKREELFSAFRNG-EITTLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS D+
Sbjct: 471 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAHAHFYTVVSRDS 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
+ Y+ RQ+FL +QGY++++I + P
Sbjct: 521 LDSDYAAHRQRFLAEQGYAYRIIDAADLP 549
>gi|441161070|ref|ZP_20967874.1| ATP-dependent DNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
gi|440616801|gb|ELQ79926.1| ATP-dependent DNA helicase [Streptomyces rimosus subsp. rimosus
ATCC 10970]
Length = 547
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A R K + L L TN VS QW
Sbjct: 182 RPYQQQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMARAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D++ ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEVGEYSGTKKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + +K E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEPEEKYR-YCATTASKQSVTEALVRRH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G++ +V + L E L P+I G T++ +R K+ AF+ +++ + +SKV +
Sbjct: 407 KGEQTLVIGQYIDQLDELGEHLGAPVIKGETTNAQREKLFDAFR-EGEISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 VDQDFAAHRQRFLAEQGYAYRIV 538
>gi|226313631|ref|YP_002773525.1| ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
gi|226096579|dbj|BAH45021.1| putative ATP-dependent helicase [Brevibacillus brevis NBRC 100599]
Length = 557
Score = 237 bits (605), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 216/385 (56%), Gaps = 23/385 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ++++ + G SG++VLPCGAGK+++G+ A C+++ + L L TN SV QW
Sbjct: 188 RSYQKEAVDAFYSGGAVTGGSGVLVLPCGAGKTIIGLGAICQLQTATLILTTNTTSVRQW 247
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + + + +T D+KE + V TY ++ + +E+ ++ R
Sbjct: 248 IAELLDKTGLDPNMVGEYTGDNKE----VKPITVATYQILTY-RPTAEDDFPHLKLFSER 302
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR V S ++ +LGLTATLVRED R D+ LIGPK YE W
Sbjct: 303 DWGLIIYDEVHLLPAPIFR-VTSGIQATRRLGLTATLVREDGREEDVFTLIGPKKYEVPW 361
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+ + G+IA C E+ P ++ Y +++K + NP K L+ H
Sbjct: 362 KVMEEQGWIAEAHCREIRLPFEPKWREAY-AHATARQKFRIAAENPKKLEVVRELLERHA 420
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D++++ + L + A L+ P+I G ER + FK ++ + +SKV
Sbjct: 421 H---DRVLIIGQYIDQLEQMATALQLPLITGKVPDKEREVLYTQFKKG-EITRLIVSKVA 476
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+ANV IQIS GSR++EAQRLGRILR K ++ A FY+LV+
Sbjct: 477 NFAVDLPDANVAIQISGTYGSRQEEAQRLGRILRPK----------TDDNTAHFYTLVTR 526
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT+E +S RQ FL++QGY + +I
Sbjct: 527 DTREQEFSLHRQLFLVEQGYPYDII 551
>gi|359778201|ref|ZP_09281472.1| putative ATP-dependent DNA helicase [Arthrobacter globiformis NBRC
12137]
gi|359304664|dbj|GAB15301.1| putative ATP-dependent DNA helicase [Arthrobacter globiformis NBRC
12137]
Length = 547
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 216/385 (56%), Gaps = 30/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ + + G SG++VLPCGAGK+LVG +A + L L TN VS QW
Sbjct: 183 RPYQRLATENFWAGG---SGVVVLPCGAGKTLVGAAAMATSSTTTLILVTNTVSARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ KE V + TY ++ GG +E +
Sbjct: 240 ELLRRTSLTEDEIGEYSGAVKE----VRPVTIATYQVLTTKRGGLYPH-----LELVDGH 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV + K+ Y E++ K + L + K E L+ H
Sbjct: 350 KDIEAQGYIAPADCVEVRVDLPKDERVAYAMAEDADKYR-LCATSETKTLVAEQLVAHH- 407
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
RG++++V + L E +L P+I G T R K+ AF+ ++ T+ +SKV
Sbjct: 408 --RGEQVLVIGQYIDQLDELGERLGAPVIKGETPVKARQKLFDAFRAG-EVQTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V IQ+S GSR++EAQRLGR+LR K ++ A FYSLV+
Sbjct: 465 NFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK----------QDGRAARFYSLVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ KRQ+FL +QGY+++++
Sbjct: 515 DTLDQDFAAKRQRFLAEQGYAYRIM 539
>gi|409358860|ref|ZP_11237219.1| ATP-dependent DNA helicase [Dietzia alimentaria 72]
Length = 555
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 148/392 (37%), Positives = 227/392 (57%), Gaps = 29/392 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK++VG +A R K + L L TN V+ QW
Sbjct: 185 RDYQQMATDSFWAGG---SGVVVLPCGAGKTMVGAAAMARAKATTLILVTNTVAGRQWKR 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE R V + TY +V ++++ + +E +++W
Sbjct: 242 ELLARTTLTEDEIGEYSGERKE-IR---PVTIATYQVVT---RKTKGVHRALELFDSQDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 295 GLMIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E ++ K L K + ++ H
Sbjct: 354 IEAQGWIAPADCVEVRVTLTENERMLYATAE-AEDKYKLCSTARTKIPVVKKILARHA-- 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V L L E +L P+I G+TS+ ER K+ AF+ +++T+ +SKV +
Sbjct: 411 -GAPTLVIGAYLDQLEELGAELDAPVIQGSTSNKEREKLFNAFRAG-EISTLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 469 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPPP 415
+ Y+ RQ+FL +QGY+++++ + L PP
Sbjct: 519 LDAEYAAHRQRFLAEQGYAYRIVDADDLLGPP 550
>gi|420154767|ref|ZP_14661647.1| type III restriction enzyme, res subunit [Actinomyces massiliensis
F0489]
gi|394751515|gb|EJF35267.1| type III restriction enzyme, res subunit [Actinomyces massiliensis
F0489]
Length = 559
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 220/385 (57%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG ++ R + L L TNAVS QW
Sbjct: 198 RPYQNEAVESFWAGG---SGVVVLPCGAGKTLVGAASMARSSTTTLILVTNAVSARQWKE 254
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ ++++ +D+I ++ KE V + TY ++ K +++ + +W
Sbjct: 255 ELIRFTSLTEDEIGEYSGSRKE----VRPVTIATYQVLTTKRKGVFPHLDLLD---SHDW 307
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 308 GLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKD 366
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA C EV + Y E +K + L P K + L+ H
Sbjct: 367 LENQGWIAPAICTEVRLALDSGERMAYATAEKEEKYR-LAAATPAKLDVVDKLLDRH--- 422
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG+ +V + L E A L P+I GAT+ ER ++ AF+ ++ T+ +SKV +
Sbjct: 423 RGESALVIGQYVDQLEELAEHLGAPLITGATTVRERQRLYGAFRAG-EVRTLVVSKVANF 481
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A+V +Q+S GSR++EAQRLGRI+R K ED G++ A FY++V+ DT
Sbjct: 482 SIDLPGASVAVQVSGSFGSRQEEAQRLGRIVRPK---ED----GRQ---AHFYTVVTRDT 531
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY++ +I S
Sbjct: 532 VDQEFAAHRQRFLAEQGYTYDIIDS 556
>gi|441519118|ref|ZP_21000820.1| putative ATP-dependent DNA helicase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
gi|441454011|dbj|GAC58781.1| putative ATP-dependent DNA helicase [Gordonia hirsuta DSM 44140 =
NBRC 16056]
Length = 547
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 224/383 (58%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 183 RDYQQLATDSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 240 ELIARTSLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV M+ + +Y E K + + +K R ++ EQ
Sbjct: 352 IEAQGWIAPAECIEVRVTMSDDERLQYAVAEADTKYKLCSTAH-SKLRVVRNIL---EQH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG +V + L E +L P+I G+T + ER K+ AF+ +++T+ +SKV +
Sbjct: 408 RGQPTLVIGAYIDQLEELGRELDAPVIQGSTRNAEREKLFDAFRRG-EISTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS D+
Sbjct: 467 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GGQ----AHFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRIV 539
>gi|256833263|ref|YP_003161990.1| helicase domain-containing protein [Jonesia denitrificans DSM
20603]
gi|256686794|gb|ACV09687.1| helicase domain protein [Jonesia denitrificans DSM 20603]
Length = 558
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 213/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + G SG++VLPCGAGK+LVG +A I + L L TN VS QW
Sbjct: 189 RPYQQHATDAFTSGG---SGVVVLPCGAGKTLVGAAAMANISTTTLILVTNTVSARQWRT 245
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ +KE R V + TY ++ R + + ++ R+W
Sbjct: 246 ELLARTSLTEDEIGEYSGTTKE-IR---PVTIATYQVLT---SRRKGAYTHLDLFGARDW 298
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 299 GLIIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKD 357
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C E+ ++ Y E K + P K E ++ Q
Sbjct: 358 IEAQGYIAPADCTEIRFTLSNAERLTYATAEPDDKYR-FAASAPAKTHIVEHIV---AQH 413
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L + A +L P+I G T ER ++ AF+ +L T+ +SKV +
Sbjct: 414 AGEPTLVIGQYLDQLEDIAQRLDAPLITGKTPVKERQRLFDAFRAG-ELTTLVVSKVANF 472
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA + +Q+S GSR++EAQRLGRI+R K A G+ A FY++V+ DT
Sbjct: 473 SLDLPEATIAVQVSGSFGSRQEEAQRLGRIMRPK-------ADGR---RAHFYTIVARDT 522
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++ ++
Sbjct: 523 VDQDFAAHRQRFLAEQGYAYTIV 545
>gi|357391321|ref|YP_004906162.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
gi|311897798|dbj|BAJ30206.1| putative ATP-dependent DNA helicase [Kitasatospora setae KM-6054]
Length = 543
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 215/385 (55%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ ++ + G SG++VLPCGAGK+LVG +A K + L L TN VS QW
Sbjct: 180 QLRPYQRHAVDGFWHGG---SGVVVLPCGAGKTLVGAAAMAEAKSTTLILVTNTVSARQW 236
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ KE V + TY ++ + + +E R
Sbjct: 237 KHELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVMT---TKRKGVYAHLELFDAR 289
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W
Sbjct: 290 NWGLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPW 348
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
++ G+IA C EV +T Y E +K + K R E L+ E
Sbjct: 349 KEIEAQGYIAPADCCEVRVTLTDSERLAYATAEPEEKYR-FCSTTATKRRVVERLV---E 404
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ GD+ +V + L E L P+I G TS+ +R K+ AF+ S+++ + +SKV
Sbjct: 405 KHAGDQTLVIGQYIDQLDELGEALGAPVIKGETSNAQREKLFDAFR-SKEIGVLVVSKVA 463
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+
Sbjct: 464 NFSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHAAHFYSVVAR 513
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ RQ+FL +QGY+++++
Sbjct: 514 DTVDQDFAAHRQRFLAEQGYAYRIV 538
>gi|297200523|ref|ZP_06917920.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
gi|197709647|gb|EDY53681.1| ATP-dependent DNA helicase [Streptomyces sviceus ATCC 29083]
Length = 547
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYR-FCATTATKRKVTEALVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|408826612|ref|ZP_11211502.1| ATP-dependent DNA helicase [Streptomyces somaliensis DSM 40738]
Length = 547
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQRQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVRRTSLTEDEIGEYSGARKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +++K K R E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVDLTESERLAYATAE-AEEKYRFCATTDTKRRVTEAIVR---KF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G T + +R K+ +AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLGAPVIKGETPNAQREKLFEAFRNG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|403715128|ref|ZP_10940913.1| putative ATP-dependent DNA helicase [Kineosphaera limosa NBRC
100340]
gi|403210896|dbj|GAB95596.1| putative ATP-dependent DNA helicase [Kineosphaera limosa NBRC
100340]
Length = 547
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 219/391 (56%), Gaps = 28/391 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQE+++ + G SG++VLPCGAGK+LVG A R + L L TN V+ QW
Sbjct: 182 RPYQEQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMARSSTTTLILVTNTVAARQWRD 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +++ R+W
Sbjct: 239 ELLARTSLTEDEIGEYSGARKE----IRPVTIATYQVLTLKRKGVYPHLDLLD---ARDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 292 GLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKD 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C E+ + Y + + + + L P K ++ H
Sbjct: 351 IEAQGYIAPADCVEIRVSLPDAERMAYATADPADRYR-LASCAPVKEAVVRRIVESH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG +++V L L A +L P+I G TS +R K+ AF+ ++ + +SKV +
Sbjct: 407 RGAQVLVIGQYLDQLQILADELDAPLITGETSVAQRQKLFTAFRTG-EIGLLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K R AG A FY++V+ DT
Sbjct: 466 SIDLPEASVAVQVSGTFGSRQEEAQRLGRVLRPK-----RDAG-----TAHFYTVVTRDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS--LPPP 415
+ ++ RQ+FL +QGY+++++ + LP P
Sbjct: 516 VDADFAAHRQRFLAEQGYAYRIVDAEDLPQP 546
>gi|408531108|emb|CCK29282.1| ATP-dependent DNA helicase [Streptomyces davawensis JCM 4913]
Length = 547
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYR-FCATTATKRKVTEALVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFREG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|294629996|ref|ZP_06708556.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
gi|292833329|gb|EFF91678.1| ATP-dependent DNA helicase [Streptomyces sp. e14]
Length = 548
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDAERLAYATAETEEKYR-FCATTATKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ ++N + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFREG-EINVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAVQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|29830455|ref|NP_825089.1| ATP-dependent DNA helicase [Streptomyces avermitilis MA-4680]
gi|29607567|dbj|BAC71624.1| putative ATP-dependent DNA helicase [Streptomyces avermitilis
MA-4680]
Length = 547
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + K + E L+R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTETERLAYATAETEEKYR-FCATTATKRKVTEALVR---KF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|311740929|ref|ZP_07714756.1| ATP-dependent DNA helicase [Corynebacterium pseudogenitalium ATCC
33035]
gi|311304449|gb|EFQ80525.1| ATP-dependent DNA helicase [Corynebacterium pseudogenitalium ATCC
33035]
Length = 541
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/388 (35%), Positives = 219/388 (56%), Gaps = 29/388 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 179 QLRDYQQYATEAFWSGG---SGVVVLPCGAGKTIVGAAAMAKAESTTLILVTNTVAGRQW 235
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +++I ++ + KE + + TY +V ++++ + +E +R
Sbjct: 236 RDELLRRTTLTENEIGEYSGEKKE----IKPITIATYQVVT---RKTKGEYRALELFDSR 288
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 289 DWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 347
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L G+IA +C EV M E Y + + + + K RA + ++ H
Sbjct: 348 KELEMAGYIATAECIEVRVDMDAEERMLYATAQ-PRDRYRIAAQAAAKLRAVDKILARHP 406
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
QQ ++ + L E L P+I G+TS +R ++ Q F+ L + +SKV
Sbjct: 407 QQ----ALIIGGYVDQLKELGAHLDAPVIDGSTSTAKRERLFQQFRDG-TLPVLVVSKVA 461
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA + IQ+S GSR++EAQRLGR+LR K E A FYSLV+
Sbjct: 462 NFSIDLPEAALAIQVSGTFGSRQEEAQRLGRLLRPK------------EEEALFYSLVTR 509
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSL 412
D+ + Y+ RQ+FL +QGY++++I +L
Sbjct: 510 DSLDADYAVHRQRFLAEQGYAYRLIDAL 537
>gi|340359059|ref|ZP_08681557.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 448 str.
F0400]
gi|339885345|gb|EGQ75073.1| ATP-dependent DNA helicase [Actinomyces sp. oral taxon 448 str.
F0400]
Length = 559
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG + R + L L TNAVS QW
Sbjct: 198 RPYQTQAVEAFWAGG---SGVVVLPCGAGKTLVGAAVMARSSTTTLVLVTNAVSARQWKE 254
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ ++++ +++I ++ KE R V + TY ++ K +++ + +W
Sbjct: 255 ELIRFTSLTENEIGEYSGSRKE-IR---PVTIATYQVLTTKRKGVYPHLDLLD---SHDW 307
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 308 GLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKD 366
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA C EV + Y E + + L P K R + L+ H
Sbjct: 367 LENQGWIAPAICTEVRLTLDAGERMAYATAEREDRYR-LAAATPAKLRIVDGLLARHP-- 423
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V + L E A L P+I GAT+ ER ++ +AF+ +++T+ +SKV +
Sbjct: 424 -GESALVIGQYVDQLEELAKHLDAPLITGATTVRERQRLYEAFRAG-EVSTLVVSKVANF 481
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A+V IQ+S GSR++EAQRLGRI+R K A G++ A FY++V+ DT
Sbjct: 482 SIDLPGASVAIQVSGSFGSRQEEAQRLGRIVRPK-------ADGRQ---AHFYTVVARDT 531
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++ ++
Sbjct: 532 VDQDFAAHRQRFLAEQGYAYDIV 554
>gi|288920789|ref|ZP_06415088.1| helicase domain protein [Frankia sp. EUN1f]
gi|288347808|gb|EFC82086.1| helicase domain protein [Frankia sp. EUN1f]
Length = 1446
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A ++ + L L TN V+ QW
Sbjct: 1084 REYQKGAVAGFWEGG---SGVVVLPSGAGKTVVGAAAMAQVGATTLILVTNTVAGRQWRN 1140
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE R V + TY ++ R + +E R+W
Sbjct: 1141 ELLRRTSLTEDEIGEYSGERKE-IRP---VTIATYQVMT---ARRKGEYLHLELFGARDW 1193
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATL+RED R D+ LIGPK Y+A W +
Sbjct: 1194 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWRE 1252
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T + Y E ++ Y M + R E+
Sbjct: 1253 IEAQGWIAPAECTEVRVTLTDDERMTYAVAEPEER----YRMCSTAHSKSAVVRRLAERH 1308
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
GD++++ L L E L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 1309 AGDRVLIIGAYLDQLDELGRLLDAPVIQGSTRNKERERLFEAFRTG-EITTLVVSKVANV 1367
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY++VS DT
Sbjct: 1368 SIDLPEAGVAIQVSGTFGSRQEEAQRLGRVLRPK----------SDGRSAHFYTVVSRDT 1417
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 1418 LDQEYAAHRQRFLAEQGYAYTIV 1440
>gi|375309227|ref|ZP_09774508.1| DNA or RNA helicase of superfamily II [Paenibacillus sp. Aloe-11]
gi|375078536|gb|EHS56763.1| DNA or RNA helicase of superfamily II [Paenibacillus sp. Aloe-11]
Length = 607
Score = 236 bits (601), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 141/391 (36%), Positives = 220/391 (56%), Gaps = 30/391 (7%)
Query: 23 HAQPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSV 81
Q R YQ ++ G +G SG++VLPCGAGK+++G++ R++ L L +N SV
Sbjct: 217 QVQLRDYQVEAADAFEGADGLGGSGVLVLPCGAGKTVIGMAVMDRLQCEVLILTSNTTSV 276
Query: 82 DQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE----KI 137
QW + K + I DD I ++ KE + V TY ++ +RS++ + K+
Sbjct: 277 RQWIEELKQKTDIPDDSIGEYSGQKKE----VRPITVATYQILTH--RRSKDGDFDHMKL 330
Query: 138 IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGP 197
+ E R+WGL++ DEVH++PA +FR + + +LGLTATLVRED D+ LIGP
Sbjct: 331 LSE---RKWGLIVYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGCERDVFSLIGP 386
Query: 198 KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257
K Y+ W +L + G+IA V C E+ PMT E ++ E +++ + NP K A
Sbjct: 387 KRYDMPWKELERQGWIAQVDCVELRLPMTAELLERSMRAEG-RQQYRIAAENPAKLEAVR 445
Query: 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNT 317
L++ H G ++ L L A +L P+I GA S ER + AF+ + T
Sbjct: 446 SLMQRHS---GLPTLIIGQYLDQLRILARELGVPLITGAMSQSERVRWFDAFRKG-TIRT 501
Query: 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377
+ +SKV + ++D+P+A + I++S GSR++EAQRLGRILR K E A+
Sbjct: 502 LLVSKVANFAVDLPDAAIAIEVSGSFGSRQEEAQRLGRILRPK----------PGENKAY 551
Query: 378 FYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
FY+LV+ +++E ++ +RQ FLI+QGY + V
Sbjct: 552 FYALVTENSRETDFAARRQLFLIEQGYEYAV 582
>gi|298242514|ref|ZP_06966321.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555568|gb|EFH89432.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 571
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 139/380 (36%), Positives = 219/380 (57%), Gaps = 33/380 (8%)
Query: 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106
++VLPCGAGK++VG+ I+++ L L N V+V QW + + +++ + I +T +
Sbjct: 210 VVVLPCGAGKTIVGLVTMADIQRATLILTPNTVAVRQWIHELRAKTSLPPEMIGEYTGER 269
Query: 107 KERFRGNAGVVVTTYNMVAFGGKRSEE--SEKI-----IEEIRNREWGLLLMDEVHVVPA 159
K+ A V V+TY M+ + EE +E + I + + +WGL++ DEVH++PA
Sbjct: 270 KD----IAPVTVSTYQMLTYRRANGEEEGAESLADYPHISLLTSYDWGLIIYDEVHLLPA 325
Query: 160 HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA 219
+FR V + ++ +LGLTATLVRED R D+ LIGPK Y+ W +L + G+IA +C
Sbjct: 326 PVFR-VTAEIQARRRLGLTATLVREDGREADVFSLIGPKKYDVPWRELERQGWIATAECH 384
Query: 220 EVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF 279
E+ + E Y + +++K L NP KF L EQ R D++++ L
Sbjct: 385 EIRVSLPDEGQLTYAMAQ-TREKYRLAAENPAKFTVTRLL---SEQHRDDQVLIIGQYLD 440
Query: 280 ALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI 339
L A +L+ P++ G TS +R K+ + F+ + + + +SKV + +ID+P+ANV IQ+
Sbjct: 441 QLKALAQELQAPLLTGRTSTSQREKLYEQFRQGQ-IKRLVVSKVANFAIDLPDANVAIQV 499
Query: 340 SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399
S GSR++EAQRLGRILR K GG A FY++V+ DT + +ST RQ FL
Sbjct: 500 SGTFGSRQEEAQRLGRILRPKSN------GGI----AHFYTIVTRDTCDQDFSTNRQLFL 549
Query: 400 IDQGYSFKV------ITSLP 413
+QGY + + ++SLP
Sbjct: 550 TEQGYRYSIEDAEVLLSSLP 569
>gi|300781756|ref|ZP_07091610.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
ATCC 33030]
gi|300533463|gb|EFK54524.1| probable ATP-dependent DNA helicase [Corynebacterium genitalium
ATCC 33030]
Length = 546
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 224/383 (58%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK++VG ++ + + + L L TN V+ QW
Sbjct: 185 RDYQQYATESFWEGG---SGVVVLPCGAGKTIVGAASMAQAQTTTLILVTNTVAGRQWRD 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ + KE V + TY +V ++++ K +E +R+W
Sbjct: 242 ELLRRTTLTPEEIGEYSGERKE----IRPVTIATYQVVT---RKTQGEYKALELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 295 GLIIYDEVHLLPAPVFRMAADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA +C EV ++ E Y E ++++ + + K + L+ H+
Sbjct: 354 LEMAGYIATAECVEVRTALSSEEKMVYATAE-TRERYRVAACSEGKLGVVDKLLAQHD-- 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++I++ + L E A + P+I G TS +R +F+ +L T+ +SKV +
Sbjct: 411 -GEQILIIGAFIEQLEEIAARTGAPLIDGKTSTTKRESTFDSFRNG-ELRTLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K ED GKE A FY++V DT
Sbjct: 469 SIDLPEAAVGIQVSGTFGSRQEEAQRLGRLLRPK---ED----GKE---ALFYTIVVRDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ +RQ+FL +QGY+++++
Sbjct: 519 LDAEYAARRQRFLAEQGYAYRLV 541
>gi|374987682|ref|YP_004963177.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
BCW-1]
gi|297158334|gb|ADI08046.1| putative ATP-dependent DNA helicase [Streptomyces bingchenggensis
BCW-1]
Length = 551
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 220/385 (57%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMATAKSTTLILVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 238 ELVRRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + + +K + E L+ H
Sbjct: 350 IEAQGYIAPADCVEVRVNLTEHERLAYATAEADEKYRYCATTD-SKRKVTEALVARH--- 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G + +V + L E L P+I G T++ +R K+ AF+ +++ + +SKV +
Sbjct: 406 KGQQTLVIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRRG-EISVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAVFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY+++++ S
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIVDS 539
>gi|453052341|gb|EME99825.1| ATP-dependent DNA helicase [Streptomyces mobaraensis NBRC 13819 =
DSM 40847]
Length = 549
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/383 (36%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQRQAVDGFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +++K K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDGERLAYATAE-AEEKYRFCATTATKRKVTEALVRRHA-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 408 -GEQTLVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|290959478|ref|YP_003490660.1| DNA helicase [Streptomyces scabiei 87.22]
gi|260649004|emb|CBG72118.1| putative DNA helicase [Streptomyces scabiei 87.22]
Length = 546
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 216/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 181 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKSTTLILVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + +E +R+W
Sbjct: 238 ELIKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLVVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + + A + RF QQ
Sbjct: 350 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKRKVAEAIVRRFAGQQ 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I+V + L E L P+I G TS+ +R K+ AF+ ++N + +SKV +
Sbjct: 410 ----ILVIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFRQG-EINVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIM 537
>gi|455648330|gb|EMF27207.1| ATP-dependent DNA helicase [Streptomyces gancidicus BKS 13-15]
Length = 547
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYR-FCSTTATKQKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ +AF+ +L+ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFRQG-ELSVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAVQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|441519737|ref|ZP_21001409.1| putative ATP-dependent DNA helicase [Gordonia sihwensis NBRC
108236]
gi|441460490|dbj|GAC59370.1| putative ATP-dependent DNA helicase [Gordonia sihwensis NBRC
108236]
Length = 550
Score = 235 bits (599), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 224/385 (58%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQELAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT +Y E +K + + +K R ++ E+
Sbjct: 352 IEAQGWIAPAECIEVRVTMTDSERLQYAVAEPEEKYKLCSTAH-SKIRVVRSIL---ERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R + +V + L E +L P+I G+T + ER K+ AF+ +L T+ +SKV +
Sbjct: 408 RDSQTLVIGAYIDQLEELGRELDAPVIQGSTRNAEREKLFDAFRRG-ELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GGQ----AHFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY+++++ +
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRIVDA 541
>gi|289770106|ref|ZP_06529484.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
gi|289700305|gb|EFD67734.1| ATP-dependent DNA helicase [Streptomyces lividans TK24]
Length = 548
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 185 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKSTTLILVTNTVSARQWKH 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 242 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 295 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + + K + E ++R +
Sbjct: 354 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYRFCATTD-TKRKVTEAIVR---RF 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ ++F+ +++ + +SKV +
Sbjct: 410 AGQQILVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFESFRQG-EISVLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 469 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 519 LDQDFAAHRQRFLAEQGYAYRIM 541
>gi|385680851|ref|ZP_10054779.1| DNA/RNA helicase, superfamily II [Amycolatopsis sp. ATCC 39116]
Length = 545
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 146/382 (38%), Positives = 220/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A R + + L L TN V+ QW
Sbjct: 183 RDYQRQAAEAFWAGG---SGVVVLPCGAGKTLVGAAAMARAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE R V + TY ++ ++S+ K +E +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGEKKE-IR---PVTIATYQVIT---RKSKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E S+ K L K + ++ H
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDNERLLYATAE-SEDKYKLAATARTKIPVVKSILDKHA-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
GD+ +V L L E +L P+I G+T + ER + AF+ +++ + +SKV +
Sbjct: 409 -GDQTLVIGAYLDQLEELGAELNAPVIQGSTRNKEREALFDAFRRG-EIDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G++ A FYS+VS DT
Sbjct: 467 SIDLPEATVAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++ +
Sbjct: 517 LDTEYAAHRQRFLAEQGYAYTI 538
>gi|395769274|ref|ZP_10449789.1| ATP-dependent DNA helicase [Streptomyces acidiscabies 84-104]
Length = 548
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +++K K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAE-AEEKYRFCATTATKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|383830141|ref|ZP_09985230.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
gi|383462794|gb|EID54884.1| DNA/RNA helicase, superfamily II [Saccharomonospora xinjiangensis
XJ-54]
Length = 548
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A R + + L L TN V+ QW
Sbjct: 183 RDYQRQAADAFWAGG---SGVVVLPCGAGKTLVGAAAMARAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY +V +R++ + +E +R+W
Sbjct: 240 ELVERTSLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E+ ++ Y + + E+
Sbjct: 352 IEAQGWIAPAECVEVRVTLTDAERLGYATAESEER----YRLASTARTKIGVISSIVEKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P++ G+T + ER + AF+ +++ + +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEELGAELNAPVVQGSTKNREREALFDAFRRG-EIDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+V+ DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYRIV 539
>gi|375097404|ref|ZP_09743669.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
gi|374658137|gb|EHR52970.1| DNA/RNA helicase, superfamily II [Saccharomonospora marina XMU15]
Length = 548
Score = 235 bits (599), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 183 RGYQRDAAQAFWAGG---SGVVVLPCGAGKTLVGAAAMAQAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK ++ W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA +C EV +T Y E+ ++ Y + + E+
Sbjct: 352 IEQQGWIAPAECVEVRVTLTDGERLGYATAESEER----YRLASTARTKVAVIKSIVERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P+I G+T + ER + AF+ +L+ + +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEELGAELEAPVIQGSTRNAEREALFDAFRRG-ELDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++++I
Sbjct: 517 VDTDYAAHRQRFLTEQGYAYRII 539
>gi|453362685|dbj|GAC81440.1| putative ATP-dependent DNA helicase [Gordonia malaquae NBRC 108250]
Length = 544
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 145/385 (37%), Positives = 224/385 (58%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQELAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAAATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV MT E +Y E +++K L +K + ++ H
Sbjct: 352 IEAQGWIAPADCVEVRVTMTDEERLQYAVAE-AEEKYKLCSTARSKMSVVKSILGRHSDA 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L E L P+I G+T + ER K+ AF+ +L+T+ +SKV +
Sbjct: 411 QTLVIGAYIDQLEELGE---ALNCPVIQGSTRNAEREKLFDAFRRG-ELSTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GGQ----AHFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY++++I +
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRIIDA 541
>gi|258654903|ref|YP_003204059.1| helicase domain-containing protein [Nakamurella multipartita DSM
44233]
gi|258558128|gb|ACV81070.1| helicase domain protein [Nakamurella multipartita DSM 44233]
Length = 554
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A + + + L L TN VS QW
Sbjct: 183 RSYQQEAVDGFWDGG---SGVVVLPCGAGKTLVGAAAMAKAQATTLILVTNTVSGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S + ++ +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSGGQYRHLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + K ++ H
Sbjct: 352 IESQGWIAPAECTEVRVTLTDHERLTYATAEPEERYKIASTAR-TKLPVVRTVLDRHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L+ P+I G+T + ER ++ AF+ ++ T+ +SKV +
Sbjct: 409 -GEPTLVIGAYLDQLEELGEELQAPIIQGSTRNAERERLFDAFRAG-EIKTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P+A V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPDATVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSIVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 LDTDYAAHRQRFLAEQGYAYRIV 539
>gi|345854813|ref|ZP_08807609.1| DNA helicase [Streptomyces zinciresistens K42]
gi|345633718|gb|EGX55429.1| DNA helicase [Streptomyces zinciresistens K42]
Length = 546
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 217/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 181 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAEAKSTTLILVTNTVSARQWKH 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + +E +R+W
Sbjct: 238 ELVKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 291 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K R E L+R +
Sbjct: 350 IEAQGYIAPADCVEVRVNLTDAERLAYATAEQEEKYR-FCATTDTKRRVTEALVR---RF 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 406 AGQQILVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFGAFR-EGEISVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 465 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 515 IDQDFAAHRQRFLAEQGYAYRIV 537
>gi|408679846|ref|YP_006879673.1| putative ATP-dependent DNA helicase [Streptomyces venezuelae ATCC
10712]
gi|328884175|emb|CCA57414.1| putative ATP-dependent DNA helicase [Streptomyces venezuelae ATCC
10712]
Length = 546
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQKQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +++K K + E L++ E
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAE-AEEKYRFCATTATKRKVTEALVKKFE-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G T + +R K+ AF+ +++ + +SKV +
Sbjct: 408 -GQQILVIGQYIDQLDELGEHLDAPVIKGETPNAQREKLFDAFRTG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|334562936|ref|ZP_08515927.1| putative helicase [Corynebacterium bovis DSM 20582]
Length = 553
Score = 234 bits (598), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 141/387 (36%), Positives = 217/387 (56%), Gaps = 26/387 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK++VG +A R + + L L TN V+ QW
Sbjct: 185 QLRDYQQMAADSFWDGG---SGVVVLPCGAGKTMVGAAAMARSRTTTLILVTNTVAGRQW 241
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +++I ++ + KE V + TY +V +R++ + +E +R
Sbjct: 242 RDELLRRTTLTEEEIGEYSGERKE----IRPVTIATYQVVT---RRTKGEFRSLELFDSR 294
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 295 DWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 353
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV +T Y E + + + L + K R L+ H
Sbjct: 354 KDIEAQGWIAPAECTEVRVSLTDAERMVYATAEPADRYR-LAATSATKTRTVRRLLARHP 412
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ ++ + L E +L P+I G TS R + AF+ ++ + +SKV
Sbjct: 413 ---GEPTLIIGAYVDQLEELGAELDAPVIDGRTSTTRREALYAAFRAG-EVRVLVVSKVA 468
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ S+D+P A+V IQ+S GSR++EAQRLGR+LR K GG A FYS+V+
Sbjct: 469 NFSVDLPGASVAIQVSGTFGSRQEEAQRLGRLLRPKPD------GGA----AHFYSVVAR 518
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT + Y+ RQ+FL +QGY +++I S
Sbjct: 519 DTLDSEYAAHRQRFLAEQGYGYRIIDS 545
>gi|302552290|ref|ZP_07304632.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
40736]
gi|302469908|gb|EFL33001.1| ATP-dependent DNA helicase [Streptomyces viridochromogenes DSM
40736]
Length = 547
Score = 234 bits (598), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVRRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVSLTDAERLAYATAETEEKYR-FCATTDTKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFREG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK----------SDGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|429193886|ref|ZP_19186022.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
gi|428670413|gb|EKX69300.1| DEAD/DEAH box helicase [Streptomyces ipomoeae 91-03]
Length = 547
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYR-FCSTTATKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ ++N + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFREG-EINVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|418475464|ref|ZP_13044861.1| ATP-dependent DNA helicase [Streptomyces coelicoflavus ZG0656]
gi|371543924|gb|EHN72687.1| ATP-dependent DNA helicase [Streptomyces coelicoflavus ZG0656]
Length = 548
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + + + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGAMAQARSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTDTKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ ++F+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFESFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 LDQDFAAHRQRFLAEQGYAYRIM 538
>gi|340793573|ref|YP_004759036.1| hypothetical protein CVAR_0611 [Corynebacterium variabile DSM
44702]
gi|340533483|gb|AEK35963.1| hypothetical protein CVAR_0611 [Corynebacterium variabile DSM
44702]
Length = 548
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 142/386 (36%), Positives = 218/386 (56%), Gaps = 26/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 187 RDYQEMAAESFWSGG---SGVVVLPCGAGKTMVGAAAMAKSKTTTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 244 ELIRRTSLTEDEIGEYSGERKE----IRPVTIATYQVVT---RKTKGVFRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFIA C EV + Y E ++K + L +P K ++ H
Sbjct: 356 IEAQGFIAPADCTEVRVQLGDNDRMIYATAEQNEKYR-LAACSPVKTDVVRKILAKHA-- 412
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V + L E +L P+I G T + R ++ AF+ +L+ + +SKV +
Sbjct: 413 -GEPALVIGAYIDQLEELGEELDAPVIDGRTPNKRREELFDAFRAG-ELSVLVVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A+V IQIS GSR++EAQRLGRILR K + A+FYS+V+ DT
Sbjct: 471 SIDLPGASVAIQISGTFGSRQEEAQRLGRILRPK----------PDGSAAYFYSVVTRDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSL 412
+ Y+ RQ+FL +QGY +++I S+
Sbjct: 521 LDADYAAHRQRFLAEQGYGYRIIDSI 546
>gi|427706036|ref|YP_007048413.1| type III restriction protein res subunit [Nostoc sp. PCC 7107]
gi|427358541|gb|AFY41263.1| type III restriction protein res subunit [Nostoc sp. PCC 7107]
Length = 556
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 223/386 (57%), Gaps = 27/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + +GR + SG+IVLPCGAGK++VG++A +++S L L+T+ SV QW
Sbjct: 190 RDYQSQAAEAFYQSGRVQGGSGVIVLPCGAGKTIVGMTAIAAVQESTLVLSTSLTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAG-VVVTTYNMVAFGGKRSEESEKIIEEIRN 143
+ + + +D I ++ + K N G + ++TY ++ + +R + +
Sbjct: 250 RRELLDKTDLPEDAIAEYSGEVK-----NTGPITLSTYQILTYRHQRDGDFPHF-DLFSA 303
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R D+ LIGPK Y+
Sbjct: 304 RSWGLIIYDEVHLLPAPVFRITAEL-QARRRLGLTATLIREDGREGDVFALIGPKRYDVP 362
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEY-LKKENSKKKQALYVMNPNKFRACEFLIRF 262
W +L GGFIA C E+ KE EY L ++ + A NP K + + L+
Sbjct: 363 WRELEGGGFIATASCTEIRVSQDKERQMEYALAPRRNQFRVA--AENPRKVQVIKDLL-- 418
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
++ G +I++ + L L A + P+I G T ER K+ QAF+ + L + LS+
Sbjct: 419 -ARESGHRILIIGEFLSQLEAIAQVTQLPLITGKTPEKEREKLYQAFREGK-LGGLVLSR 476
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
VG+ +ID+P+A+++IQ+S GSR++EAQRLGR+LR K + A FY+LV
Sbjct: 477 VGNFAIDLPDADILIQVSGKYGSRQEEAQRLGRVLRPK----------SDGRPAQFYTLV 526
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
S T E ++ RQ FL +QGYS+++
Sbjct: 527 SLRTCEEDFARHRQLFLTEQGYSYQI 552
>gi|443626543|ref|ZP_21110961.1| putative ATP-dependent DNA helicase [Streptomyces viridochromogenes
Tue57]
gi|443339950|gb|ELS54174.1| putative ATP-dependent DNA helicase [Streptomyces viridochromogenes
Tue57]
Length = 548
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E L+R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYR-FCATTDTKRKVTEALVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFREG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK----------SDGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|456385575|gb|EMF51143.1| DNA helicase [Streptomyces bottropensis ATCC 25435]
Length = 547
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 216/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + + A + RF QQ
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAEQEEKYRFCSTTATKRKVAEAIVRRFAGQQ 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
I+V + L E L P+I G TS+ +R K+ AF+ ++N + +SKV +
Sbjct: 411 ----ILVIGQYIDQLDELGAHLDAPVIKGETSNAQREKLFDAFRRG-EINVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHKAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|302530595|ref|ZP_07282937.1| DNA helicase [Streptomyces sp. AA4]
gi|302439490|gb|EFL11306.1| DNA helicase [Streptomyces sp. AA4]
Length = 548
Score = 234 bits (597), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ K+ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RDYQRKAAEAFWAGG---SGVVVLPCGAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T+ +Y ++ ++ Y + + ++
Sbjct: 352 IEAQGWIAPAECTEVRVTLTENERLQYATADSDER----YKLAATAMTKIPVIRSIVDKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L +L P+I GAT + ER ++ F+ +L T+ +SKV +
Sbjct: 408 PGEPTLVIGAYLDQLEMLGAELEAPVIQGATKNKEREELFDKFRRG-ELRTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSIVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYHIV 539
>gi|333997565|ref|YP_004530177.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-2]
gi|333740745|gb|AEF86235.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-2]
Length = 599
Score = 234 bits (597), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 214/385 (55%), Gaps = 27/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + GN +G ++VLPCG+GK++VG++ +K + L L TN +V QW
Sbjct: 214 RDYQAEAARSVLGNNGPGTGYGVVVLPCGSGKTMVGMALMTLLKTNTLVLTTNVAAVHQW 273
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + DQI +T DSK G A V + TY ++ + R + + R R
Sbjct: 274 IDELLDKTDLTKDQIAEYTGDSK----GVAPVTIATYQIITWRPDRDADFPHF-KLFRER 328
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNF-LIGPKLYEAN 203
WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R D F L+GPK Y+
Sbjct: 329 PWGLIIYDEVHLLPAPVFRVTAEL-QAVRRLGLTATLIRED-RAEDAVFSLVGPKRYDVP 386
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W DL G+IA C E+ M ++ Y ++K + NP K L+ H
Sbjct: 387 WKDLEGKGWIAEALCTEIRLDMPEKLKIPY-AVAAPREKYRIASENPYKEIIARQLVENH 445
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
+ D I+V + L A L+ P+I G T++ ER K+ AFK D+ I +SKV
Sbjct: 446 PE---DHILVIGQYIAQLESLARLLKAPLITGKTANAEREKVYGAFKRG-DVRVIVVSKV 501
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ +ID+P+A++ IQ+S GSR++EAQRLGRILR KG+ N++FY+LVS
Sbjct: 502 ANFAIDLPDASMAIQVSGSFGSRQEEAQRLGRILRPKGR------------NSYFYTLVS 549
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ+FL +QGY + +
Sbjct: 550 RYTVEEDFAANRQKFLAEQGYKYAI 574
>gi|357590863|ref|ZP_09129529.1| hypothetical protein CnurS_11732 [Corynebacterium nuruki S6-4]
Length = 548
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 218/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 187 RDYQAMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKSKTTTLILVTNTVAGRQWRD 243
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 244 ELIRRTTLTEDEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEFRALELFDSRDW 296
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 297 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKD 355
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + + Y E ++K + L +P K + ++ +Q
Sbjct: 356 IEAQGWIAPADCTEVRVQLGENERMIYATAEQNEKYR-LAACSPKKTAVVQKIL---DQH 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
D +V + L E +L P+I G T+ R ++ AF+ +L + +SKV +
Sbjct: 412 PDDPTLVIGAYIDQLEELGEELDAPVIDGKTTTHRREELYDAFRAG-ELRVLIVSKVANF 470
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A+V +Q+S GSR++EAQRLGRILR K GG AFFYS+V+ DT
Sbjct: 471 SIDLPGASVAVQVSGTFGSRQEEAQRLGRILRPKPD------GGP----AFFYSVVARDT 520
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY +++I S
Sbjct: 521 LDADYAAHRQRFLAEQGYGYRIIDS 545
>gi|319948963|ref|ZP_08023067.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
gi|319437368|gb|EFV92384.1| ATP-dependent DNA helicase [Dietzia cinnamea P4]
Length = 555
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 223/392 (56%), Gaps = 29/392 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 185 RDYQQMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE R V + TY +V ++++ + +E +R+W
Sbjct: 242 ELLARTTLTEDEIGEYSGERKE-IR---PVTIATYQVVT---RKTKGVHRALELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 295 GLMIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E K Y + + + +
Sbjct: 354 IEAQGWIAPADCIEVRVTLTENERMLYATAEAEDK----YKLCSTARTKIPVVRKILARH 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V L L E +L P+I G+TS+ ER K+ F+ +++T+ +SKV +
Sbjct: 410 AGAPTLVIGAYLDQLEELGAELDAPVIQGSTSNKEREKLFDQFRNG-EISTLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 469 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPPP 415
+ Y+ RQ+FL +QGY+++++ + L PP
Sbjct: 519 LDAEYAAHRQRFLAEQGYAYRIVDADDLLGPP 550
>gi|377574780|ref|ZP_09803795.1| putative ATP-dependent DNA helicase [Mobilicoccus pelagius NBRC
104925]
gi|377536485|dbj|GAB48960.1| putative ATP-dependent DNA helicase [Mobilicoccus pelagius NBRC
104925]
Length = 543
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 217/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQE ++ + G SG++VLPCGAGK+LVG +A R + + L L TN VS QW
Sbjct: 182 RPYQEHAVEGFWHGG---SGVVVLPCGAGKTLVGAAAMARARSTTLVLVTNTVSARQWRE 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + +E + R+W
Sbjct: 239 ELLRRTSLTENEIGEYSGAKKE----IRPVTIATYQVLT---TRRKGVYPHLELLDARDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 292 GLVIYDEVHLLPAPIFRMTADL-QSRRRLGLTATLVREDGRENDVFSLIGPKRYDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + + Y + + + L P K + E L+ H +
Sbjct: 351 IEAQGWIAPADCVEVRVALGESGRLAY-ATADPEDRYRLAACAPVKEQVVERLVARHPDE 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++V L L A +L P++ G T ERT++ + F+ L + +SKV +
Sbjct: 410 ---PVLVIGQYLDQLEALAARLDAPLLTGETPLKERTRLYEEFRTG-TLTRLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA+V IQ+S GSR++EAQRLGR+LR K A G+ A FY++V+ DT
Sbjct: 466 SVDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---AAHFYTIVTRDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY+++++ +
Sbjct: 516 LDADFAAHRQRFLAEQGYAYRILDA 540
>gi|329941405|ref|ZP_08290684.1| DNA helicase [Streptomyces griseoaurantiacus M045]
gi|329299936|gb|EGG43835.1| DNA helicase [Streptomyces griseoaurantiacus M045]
Length = 798
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 431 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 487
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE R V + TY ++ + + +E +R+W
Sbjct: 488 ELVKRTSLTEDEIGEYSGTRKE-IR---PVTIATYQVLT---TKRKGVYPHLELFDSRDW 540
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 541 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 599
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +++K K + E ++R
Sbjct: 600 IEAQGYIAPADCVEVRVNLTDAERLAYATAE-AEEKYRFCATTATKRKVTEAIVRRFA-- 656
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G T++ +R K+ AF+ +++ + +SKV +
Sbjct: 657 -GQQILVIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRTG-EISVLVVSKVANF 714
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 715 SIDLPEATVAVQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 764
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 765 LDQDFAAHRQRFLAEQGYAYRIV 787
>gi|326384180|ref|ZP_08205862.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326197045|gb|EGD54237.1| helicase domain-containing protein [Gordonia neofelifaecis NRRL
B-59395]
Length = 550
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 146/392 (37%), Positives = 227/392 (57%), Gaps = 29/392 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQELAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT E +Y E +K + + +K R ++ H+
Sbjct: 352 IEAQGWIAPAECIEVRVTMTDEERLQYAVAEPEEKYKLCSTAH-SKVRVVRSILDRHKDS 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L E +L P+I G+T + ER K+ AF+ +L T+ +SKV +
Sbjct: 411 QTLVIGAYIDQ---LEELGRELDCPVIQGSTRNAEREKLFDAFRRG-ELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GGQ----AHFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPPP 415
+ Y+ RQ+FL +QGY+++++ S + PP
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRIVDSDDIVGPP 548
>gi|238062309|ref|ZP_04607018.1| helicase [Micromonospora sp. ATCC 39149]
gi|237884120|gb|EEP72948.1| helicase [Micromonospora sp. ATCC 39149]
Length = 559
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 222/392 (56%), Gaps = 29/392 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 189 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 245
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 246 ELIARTSLTEDEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 298
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 299 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 357
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA QC EV +T Y E S+++ + K L+ H
Sbjct: 358 IEQQGWIAPAQCTEVRVTLTDAERMSYATAE-SEERYRMAATARTKLPVVRALVDRHP-- 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++++V + L + L P++ G+T++ ER ++ AF+ S ++ T+ +SKVG+
Sbjct: 415 -GEQVLVIGGYIEQLHQLGEYLDAPIVQGSTTNKERERLFDAFR-SGEVRTLVISKVGNF 472
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + A FY++VS DT
Sbjct: 473 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DRRQAHFYTVVSRDT 522
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPPP 415
+ Y+ RQ+FL +QGY++ +I + L PP
Sbjct: 523 IDTEYAAHRQRFLAEQGYAYTIIDADDVLGPP 554
>gi|330465290|ref|YP_004403033.1| helicase domain-containing protein [Verrucosispora maris AB-18-032]
gi|328808261|gb|AEB42433.1| helicase domain-containing protein [Verrucosispora maris AB-18-032]
Length = 559
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 189 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 245
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 246 ELIARTSLTEDEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 298
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 299 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 357
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA QC EV +T Y E ++++ + K + L+ H ++
Sbjct: 358 IESQGWIAPAQCTEVRVTLTDAERMAYATAE-AEERYRMAATARTKLPVVKALVDRHPEE 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L EY L P++ G+T++ ER ++ AF+ L T+ +SKVG+
Sbjct: 417 QTLVIGAYIDQLHQLGEY---LDAPIVQGSTTNKERERLFDAFRDG-SLRTLVISKVGNF 472
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 473 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 522
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 523 IDTEYAAHRQRFLAEQGYAYTIV 545
>gi|269957708|ref|YP_003327497.1| type III restriction protein res subunit [Xylanimonas
cellulosilytica DSM 15894]
gi|269306389|gb|ACZ31939.1| type III restriction protein res subunit [Xylanimonas
cellulosilytica DSM 15894]
Length = 558
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/402 (35%), Positives = 224/402 (55%), Gaps = 33/402 (8%)
Query: 15 DLNMELKP-------HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67
DL+ E P H + RPYQ +++ + G SG++VLPCGAGK++VG +A +
Sbjct: 174 DLSHEATPIGGEAVKHWELRPYQAQAVDAFWFGG---SGVVVLPCGAGKTIVGAAAMAKS 230
Query: 68 KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFG 127
+ L L TN VS QW + +T+ +++I ++ KE V + TY ++
Sbjct: 231 GTTTLILVTNTVSARQWKDELIRRTTLTEEEIGEYSGTRKE----IKPVTIATYQVLT-- 284
Query: 128 GKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187
+ + +E + R+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R
Sbjct: 285 -TKRKGVYAHLELLDARDWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGR 342
Query: 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247
++ LIGPK Y+A W D+ G+IA C EV + + Y E K + L
Sbjct: 343 EDEVFSLIGPKRYDAPWKDIEAQGYIAPADCVEVRLTLPESERMTYAVAEPEDKYR-LAA 401
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
K E ++ H D+++V L L E + L P+I GAT+ ER ++
Sbjct: 402 TASGKNPVVERIVAAHPD---DQVLVIGQYLDQLEELSAHLDAPLITGATTIRERQRLFD 458
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367
AF+ S +++ + +SKV + SID+PEA+V IQ+S GSR++EAQRLGR++R K
Sbjct: 459 AFR-SGEVSRLVVSKVANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRVMRPK------- 510
Query: 368 AGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
++ A FY++VS DT + ++ RQ+FL +QGY+++++
Sbjct: 511 ---QDGRTAHFYAVVSRDTVDQDFAAHRQRFLAEQGYAYRIV 549
>gi|386840890|ref|YP_006245948.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101191|gb|AEY90075.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794184|gb|AGF64233.1| ATP-dependent DNA helicase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 550
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 217/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 185 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ K +E +R+W
Sbjct: 242 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 295 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 354 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTETKRKVTEAIVR---RF 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 410 AGQQILVIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFREG-EISVLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 469 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 519 IDQDFAAHRQRFLAEQGYAYRIV 541
>gi|354614087|ref|ZP_09031975.1| helicase domain-containing protein [Saccharomonospora
paurometabolica YIM 90007]
gi|353221569|gb|EHB85919.1| helicase domain-containing protein [Saccharomonospora
paurometabolica YIM 90007]
Length = 548
Score = 234 bits (596), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 183 RDYQRRATETFWAGG---SGVVVLPCGAGKTLVGAAAMAKAEATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ K +E +R+W
Sbjct: 240 ELLARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDIPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA +C EV +T Y E+ ++ Y + + ++
Sbjct: 352 IEQQGWIAPAECTEVRVTLTDNERIAYATAESEER----YRLASTAHTKSGVIRSIVDKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E L P+I G+T + ER + + F+ S +++ + +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEELGQALDAPVIQGSTRNKEREALFERFR-SGEIDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+V+ DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 VDTDYAAHRQRFLAEQGYAYRIV 539
>gi|375102737|ref|ZP_09749000.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
gi|374663469|gb|EHR63347.1| DNA/RNA helicase, superfamily II [Saccharomonospora cyanea NA-134]
Length = 548
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A R + + L L TN V+ QW
Sbjct: 183 RDYQRRAAEAFWSGG---SGVVVLPCGAGKTLVGAAAMARAEATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 240 ELVERTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E+ ++ Y + + E+
Sbjct: 352 IEAQGWIAPAECVEVRVTLTDAERLAYATAESEER----YRLASTAHTKTGVISSIVEKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P++ G+T + ER + AF+ +++ + +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEELGAELNAPVVQGSTRNKEREALFDAFRRG-EIDRLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+V+ DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYRIV 539
>gi|227501402|ref|ZP_03931451.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
gi|227077427|gb|EEI15390.1| ATP-dependent DNA helicase [Corynebacterium accolens ATCC 49725]
Length = 541
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 220/388 (56%), Gaps = 33/388 (8%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 181 RDYQEYATDAFWSGG---SGVVVLPCGAGKTIVGAAAMAKAQSTTLILVTNTVAGRQWRD 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ + I ++ + KE + + TY +V +++ + +E +R+W
Sbjct: 238 ELLRRTTLSANDIGEYSGEKKE----IKPITIATYQVVT---RKTNGEYRALELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 291 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA +C EV M E Y + + + + K RA + ++ H+QQ
Sbjct: 350 LEMAGYIATAECIEVRVDMDPEERMLYATAQ-PRDRYRIAAQASAKLRAVDKILASHDQQ 408
Query: 267 RGDKIIV--FADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+I+ + D L L E+ L P+I G TS +R K+ Q F+ +L + +SKV
Sbjct: 409 ---ALIIGGYVDQLRELGEH---LDAPVIDGTTSTAKREKLFQQFREG-ELAILVVSKVA 461
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA + IQ+S GSR++EAQRLGR+LR K E A FY+LV+
Sbjct: 462 NFSIDLPEAALAIQVSGTFGSRQEEAQRLGRLLRPK------------ETEALFYTLVTR 509
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSL 412
D+ + Y+ RQ+FL +QGY+++++ ++
Sbjct: 510 DSLDADYAMHRQRFLAEQGYAYRLMDAV 537
>gi|227496346|ref|ZP_03926637.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
gi|226834122|gb|EEH66505.1| ATP-dependent DNA helicase [Actinomyces urogenitalis DSM 15434]
Length = 559
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG ++ R + L L TNAVS QW
Sbjct: 198 RPYQAEAVDAFWAGG---SGVVVLPCGAGKTLVGAASMARSSTTTLILVTNAVSARQWKE 254
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ ++++ +D+I ++ KE V + TY ++ K +++ +W
Sbjct: 255 ELIRFTSLTEDEIGEYSGSRKE----VRPVTIATYQVLTTKRKGVYPHLDLLD---AHDW 307
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 308 GLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPWKD 366
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA C EV + Y E S+ + L P K + L+ H
Sbjct: 367 LENQGWIAPAVCTEVRLSLEAGERMTYATAE-SEDRYRLAATTPAKVAVVDQLLARHA-- 423
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V + L E A L P+I G+T+ ER K+ QAF+ +++T+ +SKV +
Sbjct: 424 -GESALVIGQYVDQLEELAEHLGAPVITGSTTVRERQKLYQAFRDG-EVSTLVVSKVANF 481
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A+V IQ+S GSR++EAQRLGRI+R K + G++ A FY++V+ DT
Sbjct: 482 SIDLPGASVAIQVSGSFGSRQEEAQRLGRIVRPK-------SDGRQ---AHFYTVVTRDT 531
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ +++ RQ+FL +QGY+++V
Sbjct: 532 VDQEFASHRQRFLAEQGYAYEV 553
>gi|291438904|ref|ZP_06578294.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
gi|291341799|gb|EFE68755.1| ATP-dependent DNA helicase [Streptomyces ghanaensis ATCC 14672]
Length = 547
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/383 (34%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + + + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAQSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + +E +R+W
Sbjct: 239 ELVKRTSLTEDEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDSERLAYATAETEEKYR-FCATTATKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ +AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFEAFRQG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA V +Q+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SVDLPEATVAVQVSGTFGSRQEEAQRLGRVLRPKA----------DGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|452949117|gb|EME54588.1| DNA excision repair protein [Amycolatopsis decaplanina DSM 44594]
Length = 548
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ K+ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RDYQRKAAEAFWAGG---SGVVVLPCGAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY +V ++++ K ++ +R+W
Sbjct: 240 ELVARTSLTEEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYKHLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++++ L K + + L+ H
Sbjct: 352 IEAQGWIAPAECTEVRVTLTDAERLAYATAE-AEERYKLAATADTKTKVIKSLVDRHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L +L P+I GAT + ER ++ AF+ ++ T+ +SKV +
Sbjct: 409 -GEPTLVIGAYLDQLELIGDELDAPVIQGATRNKEREELFDAFRRG-EIRTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQIS GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEASVAIQISGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYRIV 539
>gi|255325614|ref|ZP_05366713.1| DNA or RNA helicase of superfamily II [Corynebacterium
tuberculostearicum SK141]
gi|255297327|gb|EET76645.1| DNA or RNA helicase of superfamily II [Corynebacterium
tuberculostearicum SK141]
Length = 541
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 138/388 (35%), Positives = 218/388 (56%), Gaps = 29/388 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 179 QLRDYQQYATEAFWSGG---SGVVVLPCGAGKTIVGAAAMAKAESTTLILVTNTVAGRQW 235
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +++I ++ + KE + + TY +V ++++ + +E +R
Sbjct: 236 RDELLRRTTLTENEIGEYSGEKKE----IKPITIATYQVVT---RKTKGEYRALELFDSR 288
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 289 DWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 347
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L G+IA +C EV M E Y + + + + K A + ++ H
Sbjct: 348 KELEMAGYIATAECIEVRVDMDAEERMLYATAQ-PRDRYRIAAQAAAKLHAVDKILARHP 406
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
QQ ++ + L E L P+I G+TS +R ++ Q F+ L + +SKV
Sbjct: 407 QQ----ALIIGGYVDQLKELGAHLDAPVIDGSTSTAKRERLFQQFRDG-TLPVLVVSKVA 461
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA + IQ+S GSR++EAQRLGR+LR K E A FYSLV+
Sbjct: 462 NFSIDLPEAALAIQVSGTFGSRQEEAQRLGRLLRPK------------EEEALFYSLVTR 509
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSL 412
D+ + Y+ RQ+FL +QGY++++I +L
Sbjct: 510 DSLDADYAVHRQRFLAEQGYAYRLIDAL 537
>gi|392403571|ref|YP_006440183.1| helicase domain-containing protein [Turneriella parva DSM 21527]
gi|390611525|gb|AFM12677.1| helicase domain-containing protein [Turneriella parva DSM 21527]
Length = 583
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 140/404 (34%), Positives = 219/404 (54%), Gaps = 29/404 (7%)
Query: 15 DLNMELKPHAQP------RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACR 66
D EL+P R YQE S+ + +G SG++VLPCGAGK++VG+ A
Sbjct: 173 DFKFELRPKLGSGNDFVIRDYQESSIKAFYADGSVEGGSGVVVLPCGAGKTIVGIGAMHA 232
Query: 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126
+ L L TN +S+ QW + +TIQ+ +I ++ D KE + + TYN++
Sbjct: 233 VGAQTLILVTNTLSIRQWKNEILDKTTIQESEIGEYSGDKKE----IKPITIATYNILTH 288
Query: 127 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186
K+ + + WG ++ DEVH++PA +FR + S ++ +LGLTATLVRED
Sbjct: 289 RKKKGGDFTH-FHLFSSNNWGFIVYDEVHLLPAPVFR-MTSELQAKRRLGLTATLVREDG 346
Query: 187 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246
D+ LIGPK Y+ W +L K +IA +C E+ P+ + + ++K L
Sbjct: 347 LEEDVFSLIGPKKYDVPWKELEKKKWIAEARCVEIRTPL-RSLMRGMYSVADDREKFRLS 405
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
NP K R L+ H R D+++V L L + + + P+I G T ER ++
Sbjct: 406 SENPEKMRVIGTLLYHH---RDDQVLVIGQYLDQLQRVSARFKIPLITGKTPLDERARLY 462
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
+AF+ ++ + + +SKV + SID+P+ANV IQIS GSR++EAQRLGR+LR KG
Sbjct: 463 EAFR-TKQIRALVVSKVANFSIDLPDANVAIQISGTFGSRQEEAQRLGRVLRPKG----- 516
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
G + A FYS+++ ++ E + RQ FL +QGY + + +
Sbjct: 517 --NGNQ---ALFYSVITNESSEEQFCRNRQLFLTEQGYEYYIYS 555
>gi|213966421|ref|ZP_03394599.1| DNA or RNA helicase of superfamily II [Corynebacterium amycolatum
SK46]
gi|213950941|gb|EEB62345.1| DNA or RNA helicase of superfamily II [Corynebacterium amycolatum
SK46]
Length = 567
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 23/365 (6%)
Query: 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104
SG++VLPCGAGK++VG +A +++ L L TN V+ QW + +++ +D+I ++
Sbjct: 206 SGVVVLPCGAGKTIVGAAAMVDAQRTTLILVTNTVAGRQWRDELLRRTSLTEDEIGEYSG 265
Query: 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164
+ KE R V + TY +V ++++ + +E +R+WGL++ DEVH++PA +FR
Sbjct: 266 EKKE-IRP---VTIATYQVVT---RKTKGEYRALELFDSRDWGLIIYDEVHLLPAPVFRM 318
Query: 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 224
L +S +LGLTATLVRED R D+ LIGPK Y+A W D+ G+IA C EV
Sbjct: 319 SADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPADCVEVRVT 377
Query: 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 284
T+ Y E S + + L P K + ++ HE G+ +V L L E
Sbjct: 378 PTESERMLYATAEASDRYR-LAATTPTKIPVVKQILARHE---GEPALVIGAYLDQLEEI 433
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
+L +I G TS+ +R ++ F+ ++NT+ +SKV + SID+PEA+V +QIS G
Sbjct: 434 GEELGVDVIEGKTSNAKREELFGKFRRG-EINTLVVSKVANFSIDLPEASVAVQISGTFG 492
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SR++EAQRLGR+LR K GG A FYS+V+ DT + Y+ RQ+FL +QGY
Sbjct: 493 SRQEEAQRLGRLLRPKSD------GG----GAVFYSVVTRDTLDTEYAAHRQRFLAEQGY 542
Query: 405 SFKVI 409
+++++
Sbjct: 543 AYRIV 547
>gi|308069695|ref|YP_003871300.1| DNA or RNA helicase of superfamily II [Paenibacillus polymyxa E681]
gi|305858974|gb|ADM70762.1| DNA or RNA helicase of superfamily II [Paenibacillus polymyxa E681]
Length = 607
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 219/386 (56%), Gaps = 24/386 (6%)
Query: 25 QPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
Q R YQ K+ G +G SG++VLPCGAGK+++G++ R++ L L +N SV Q
Sbjct: 219 QLRDYQVKAADAFEGADGLGGSGVLVLPCGAGKTVIGMAVMNRLQCEVLILTSNTTSVRQ 278
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE-KIIEEIR 142
W + K + I D I ++ KE + V TY ++ +R+++ + + ++ +
Sbjct: 279 WVEELKRKTDIPADSIGEYSGQKKE----VRPITVATYQILTH--RRTKDGDFEHMKLLS 332
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
R+WGL++ DEVH++PA +FR + + +LGLTATLVRED D+ LIGPK Y+
Sbjct: 333 ERKWGLIIYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGCERDVFSLIGPKRYDM 391
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W +L + G+IA V C E+ PMT E ++ E +++ + NP K A L++
Sbjct: 392 PWKELEQQGWIAQVDCVELRLPMTAELMERSMRAEG-RQQYRIAAENPVKLEAVRSLMQQ 450
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H G ++ L L A +L P+I G+ S ER + AF+ + T+ +SK
Sbjct: 451 HS---GLPTLIIGQYLDQLRILAQELGVPLITGSMSQTERVRWFDAFRKG-TIRTLLVSK 506
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + ++D+P+A V I++S GSR++EAQRLGRILR K E A+FY+LV
Sbjct: 507 VANFAVDLPDAAVAIEVSGSFGSRQEEAQRLGRILRPKSG----------ENKAYFYALV 556
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
+ +++E ++ +RQ FLI+QGY + V
Sbjct: 557 TENSKETDFAARRQLFLIEQGYEYAV 582
>gi|325962248|ref|YP_004240154.1| DNA/RNA helicase [Arthrobacter phenanthrenivorans Sphe3]
gi|323468335|gb|ADX72020.1| DNA/RNA helicase, superfamily II [Arthrobacter phenanthrenivorans
Sphe3]
Length = 548
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 219/385 (56%), Gaps = 30/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK+LVG +A + L L TN V+ QW
Sbjct: 183 RPYQQMASDNFWAGG---SGVVVLPCGAGKTLVGAAAMATGSTTTLILVTNTVAARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ KE V + TY ++ GG +E +
Sbjct: 240 ELLKRTSLTEDEIGEYSGAVKE----VRPVTIATYQVLTTKRGGLYPH-----LELVDGH 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV + K+ Y +++ K + L + +K + E L+ H
Sbjct: 350 KDIESQGYIAPADCVEVRVDLPKDERVAYAMADDADKYR-LCSTSESKTQVVEQLVARHA 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++++V + L + +L+ P+I G TS R K+ AF+ + T+ +SKV
Sbjct: 409 ---GEQLLVIGQYIDQLDDLGERLQAPVIKGDTSVKVRQKLFDAFRAGH-IQTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V IQ+S GSR++EAQRLGR+LR K K+ A FYSLV+
Sbjct: 465 NFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK----------KDGRAARFYSLVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ KRQ+FL +QGY+++++
Sbjct: 515 DTLDQEFAAKRQRFLAEQGYAYRIM 539
>gi|336319557|ref|YP_004599525.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336103138|gb|AEI10957.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 546
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 218/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ F G SG++VLPCGAGK++VG A + + L L TN VS QW
Sbjct: 182 RPYQQQAVDGFFHGG---SGVVVLPCGAGKTIVGAGAMAKSSTTTLILVTNTVSARQWRD 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E + R+W
Sbjct: 239 ELVRRTSLTEDEIGEYSGARKE----IRPVTIATYQVLT---TKRQGVYTHLELLDARDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK ++A W D
Sbjct: 292 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRFDAPWKD 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV + Y E +K + L K R E L+ HE
Sbjct: 351 IEAQGYIAPAECIEVRLTLPDADRMAYATAEPEEKYR-LAATASGKNRVVEQLVAQHE-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E A + +I G T+ ER ++ AF+ S +++ + +SKV +
Sbjct: 408 -GEPTLVIGQYLDQLHELAEHIGADLITGETTVRERQRLFDAFR-SGEISKLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGRI+R K A G+ A FY++V+ DT
Sbjct: 466 SIDLPEASVAIQVSGSFGSRQEEAQRLGRIMRPK-------ASGR---TAHFYTVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY++ ++ S
Sbjct: 516 VDQEFAAHRQRFLAEQGYAYSILDS 540
>gi|306835555|ref|ZP_07468568.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
49726]
gi|304568555|gb|EFM44107.1| probable ATP-dependent DNA helicase [Corynebacterium accolens ATCC
49726]
Length = 540
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 221/388 (56%), Gaps = 33/388 (8%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 181 RDYQEYATDAFWSGG---SGVVVLPCGAGKTIVGAAAMAKAQSTTLILVTNTVAGRQWRD 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ + I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 238 ELLRRTTLSPNDIGEYSGEKKE----IKPITIATYQVVT---RKTKGEYRALELFDSRDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 291 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA +C EV M E Y + + + + K RA + ++ H+QQ
Sbjct: 350 LEMAGYIATAECIEVRVDMDPEERMLYATAQ-PRDRYRIAAQASAKLRAVDKILASHDQQ 408
Query: 267 RGDKIIV--FADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+I+ + D L L E+ L P+I G TS +R K+ Q F+ L+ + +SKV
Sbjct: 409 ---ALIIGGYVDQLRELGEH---LDAPIIDGTTSTAKREKLFQQFREGV-LSILVVSKVA 461
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA + IQ+S GSR++EAQRLGR+LR K E A FY+LV+
Sbjct: 462 NFSIDLPEAALAIQVSGTFGSRQEEAQRLGRLLRPK------------ETAALFYTLVTR 509
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSL 412
D+ + Y+ RQ+FL +QGY+++++ ++
Sbjct: 510 DSLDADYAMHRQRFLAEQGYAYRLMDAV 537
>gi|269125068|ref|YP_003298438.1| helicase domain-containing protein [Thermomonospora curvata DSM
43183]
gi|268310026|gb|ACY96400.1| helicase domain protein [Thermomonospora curvata DSM 43183]
Length = 550
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ ++ + G SG++VLPCGAGK++VG +A R + + L L TN VS QW
Sbjct: 183 RPYQREAADAFWHGG---SGVVVLPCGAGKTIVGAAAMARARATTLILVTNTVSAHQWKQ 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + + +E + R+W
Sbjct: 240 ELLRRTSLTEDEIGEYSGARKE----IRPVTIATYQIMT---TRRKGAYPHLELLDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 293 GLVIYDEVHLLPAPIFRMTAEL-QARRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E + + L K R E L+ H
Sbjct: 352 MEAQGWIAPADCVEVRVTLTESERLAYATAEPEDRYR-LCATAHTKTRVIESLVARH--- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++I+V + L E + L P++ G T ER ++ +F+ S +L + +SKV +
Sbjct: 408 RGEQILVIGQYIDQLDELSALLDAPVVKGDTRIRERERLFASFR-SGELPVLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K + GK A FY++V+ DT
Sbjct: 467 SIDLPEASVAIQVSGAYGSRQEEAQRLGRVLRPK-------SSGK---GARFYAVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 LDQEYAAHRQRFLAEQGYAYRIV 539
>gi|384567607|ref|ZP_10014711.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
gi|384523461|gb|EIF00657.1| DNA/RNA helicase, superfamily II [Saccharomonospora glauca K62]
Length = 548
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A R + + L L TN V+ QW
Sbjct: 183 RDYQRQAAEAFWSGG---SGVVVLPCGAGKTLVGAAAMARARATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++++ K +E +R+W
Sbjct: 240 ELVERTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RKTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E+ ++ Y + + E+
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDAERLAYATAESEER----YRLASTAHTKTGVIASIVEKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P++ G+T + ER + AF+ +++ + +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEELGAELNAPVVQGSTRNKEREALFDAFRRG-EIDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+V+ DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYRIV 539
>gi|302560004|ref|ZP_07312346.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
gi|302477622|gb|EFL40715.1| ATP-dependent DNA helicase [Streptomyces griseoflavus Tu4000]
Length = 547
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 218/384 (56%), Gaps = 28/384 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ K +E +R+W
Sbjct: 239 ELVKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLTTKRKGIYPH---LELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLI-RFHEQ 265
+ G+IA C EV +T+ Y E +K + K R E ++ RF Q
Sbjct: 351 IEAQGYIAPADCVEVRVSLTESERLAYATAEQEEKYR-FCSTTATKQRVTEAIVKRFAGQ 409
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
Q I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 410 Q----ILVIGQYIDQLDELGEHLNAPVIKGETSNAQREKLFDAFREG-EISVLVVSKVAN 464
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ D
Sbjct: 465 FSIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHKAHFYSVVARD 514
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVI 409
T + ++ RQ+FL +QGY+++++
Sbjct: 515 TIDQDFAAHRQRFLAEQGYAYRIM 538
>gi|118616163|ref|YP_904495.1| DNA helicase Ercc3 [Mycobacterium ulcerans Agy99]
gi|118568273|gb|ABL03024.1| DNA helicase Ercc3 [Mycobacterium ulcerans Agy99]
Length = 542
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 229/403 (56%), Gaps = 30/403 (7%)
Query: 7 FRNDNVNPDLNMELKPHA-QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
+ N +P + L+P + R YQ+ + + G SG++VLPCGAGK+LVG +A
Sbjct: 158 YVNGEAHP---ISLQPDGWELRDYQQLATDSFWAGG---SGVVVLPCGAGKTLVGAAAMA 211
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ + + L L TN V+ QW + +++ +++I ++ + KE V ++TY M+
Sbjct: 212 KAQATTLILVTNIVAARQWKRELVARTSLTEEEIGEYSGERKE----IRPVTISTYQMIT 267
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
+RS+ + +E +R+WGL++ DEVH++PA +FR L +S +LGLTATL+RED
Sbjct: 268 ---RRSKGEYRHLELFDSRDWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIRED 323
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
R D+ LIGPK Y+A W D+ G+IA +C EV MT Y E ++ +
Sbjct: 324 GREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECVEVRVTMTDSERMAYATAEPEERYRLC 383
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKI 305
++ K + +++ H G++ +V L L E +L P+I GAT ER +
Sbjct: 384 STVH-TKIAVVKSILQRHP---GEQTLVIGAYLDQLEELGTELDAPVIQGATKTREREAL 439
Query: 306 LQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLED 365
AF+ ++ T+ +SKV + SID+PEA+V +Q+S GSR++EAQRLGR+LR K
Sbjct: 440 FDAFRRG-EIATLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD--- 495
Query: 366 RMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
GG+ A FYS+V+ D+ + Y+ RQ+FL +QGY + +
Sbjct: 496 ---GGR----AMFYSVVARDSLDSEYAAHRQRFLAEQGYGYII 531
>gi|358461384|ref|ZP_09171548.1| helicase domain protein [Frankia sp. CN3]
gi|357073367|gb|EHI82874.1| helicase domain protein [Frankia sp. CN3]
Length = 545
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 222/385 (57%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ +++ + G SG+IVLP GAGK++VG +A R + L L TN V+ QW
Sbjct: 181 QLRDYQKGAVAGFWEGG---SGVIVLPSGAGKTIVGAAAMARASSTTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V + TY ++ +R E + + R
Sbjct: 238 RSELLKRTSLTEDEIGEYSGERKE----VRPVTIATYQVMT--ARRGGEYLHL-DLFGAR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR + +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
++ G+IA +C EV +T++ Y E ++ + + +K E L+R H
Sbjct: 350 REIEAQGWIAPAECTEVRVTLTEDERMSYAVAEPDERYK-MCATALSKHGVVERLVRKHS 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D+++V L L L P+I G+T + ER ++ +AF+ ++ T+ +SKV
Sbjct: 409 D---DRVLVIGAYLDQLEMLGRNLDAPVIQGSTRNKERERLFEAFRTG-EITTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V IQ+S GSR++EAQRLGR+LR K A G+ +A FY++VS
Sbjct: 465 NVSIDLPEAGVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---SAHFYTVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + Y+ RQ+FL +QGY++ ++
Sbjct: 515 DTLDQEYAAHRQRFLAEQGYAYTIV 539
>gi|357012432|ref|ZP_09077431.1| putative ATP-dependent helicase [Paenibacillus elgii B69]
Length = 564
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 221/385 (57%), Gaps = 25/385 (6%)
Query: 27 RPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + G SG++VLPCGAGK+++G++A ++ + L L +N+ SV QW
Sbjct: 190 REYQRSAVDSFYREGSLHGGSGVLVLPCGAGKTVIGIAAMGKLNCATLILTSNSTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN- 143
+ + + +D + +T KE + V TY ++ + ++S++ + ++ N
Sbjct: 250 KREILDKTDVTEDLVGEYTGMQKE----VRPITVATYQILTY--RKSKDDPFVHMDLFNK 303
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R+WGL++ DEVH++PA +FR V + ++ +LGLTATL+RED R D+ L+GPK YE
Sbjct: 304 RDWGLIVYDEVHLLPAPVFR-VTADIQATRRLGLTATLIREDGREEDVFSLVGPKRYEMP 362
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L G+IA+V+C E+ PM + YL K + + NP K + L+ H
Sbjct: 363 WKELETQGWIASVECVEIRVPMADKEKEAYLAAAPRHKMREASI-NPGKLKVVRELLSKH 421
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
+ G++I++ L L + A + PMI G + ER + F+ S + + +SKV
Sbjct: 422 D---GEQILIIGQYLEQLHQLAEATKLPMISGEMPYEEREALYSGFR-SGTVPALIVSKV 477
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+A V IQIS GSR++EAQRLGRILR K AG A FY+LVS
Sbjct: 478 ANFAVDLPDATVAIQISGSFGSRQEEAQRLGRILRPK-------AGTN---RAVFYTLVS 527
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
DT+E ++ RQ FLI+QGY +++
Sbjct: 528 EDTKEQEFALNRQLFLIEQGYRYRI 552
>gi|378719475|ref|YP_005284364.1| putative DNA repair helicase [Gordonia polyisoprenivorans VH2]
gi|375754178|gb|AFA74998.1| putative DNA repair helicase [Gordonia polyisoprenivorans VH2]
Length = 555
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELVARTTLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y EN K Y + + +
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDEERLQYAVAENEAK----YKLCSTAHTKVNVVRSILARH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R + +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 408 RDSQTLVIGAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GGQ----AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|257067983|ref|YP_003154238.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
gi|256558801|gb|ACU84648.1| DNA/RNA helicase, superfamily II [Brachybacterium faecium DSM 4810]
Length = 555
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 215/385 (55%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ G SG++VLPCGAGK++VG A + ++ L L T+ VS QW
Sbjct: 183 RPYQAEAVDGFRHGG---SGVVVLPCGAGKTIVGAGAMAAMGRTTLILVTSTVSARQWKQ 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ +KE V + TY ++ + + +E + R+W
Sbjct: 240 ELLRRTTLTEEEIGEYSGAAKE----VRPVTIATYQVLTM---KRKGVHPHLELMSARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV M Y E + + + L +P K E R ++
Sbjct: 352 IEAQGYIAPAVCTEVRATMPSADRMAYAMAEAADRPR-LGAAHPGKIDVVE---RIAQRH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ ++V + L E A +L +I G T R ++ AF+ R ++ + +SKV +
Sbjct: 408 AGEPMLVIGQYIDQLEEIAERLGADLITGQTPVRRRQELFDAFREGR-IDRLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K ++ A FY++V DT
Sbjct: 467 SIDLPEASVAVQVSGAFGSRQEEAQRLGRLLRPKA----------DQRTAHFYTVVMRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
Q+ Y+ RQ+FL +QGY++ ++ +
Sbjct: 517 QDQDYAAHRQRFLAEQGYAYTIVDA 541
>gi|271970086|ref|YP_003344282.1| hypothetical protein [Streptosporangium roseum DSM 43021]
gi|270513261|gb|ACZ91539.1| conserved hypothetical protein [Streptosporangium roseum DSM 43021]
Length = 548
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/385 (36%), Positives = 218/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK++VG +A K + L L TN VS QW
Sbjct: 183 RTYQREAAEAFWHGG---SGVVVLPCGAGKTIVGAAAMAHAKATTLILVTNTVSAHQWKQ 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I +T KE V + TY ++ R + + +E R+W
Sbjct: 240 ELIKRTSLTEEEIGEYTGTKKE----IRPVTIATYQVMT---TRRQGVYRHLELFDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ ++GLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 293 GLVVYDEVHLLPAPIFRMTADL-QARRRVGLTATLVREDGREGDVFSLIGPKRYDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T + Y E S+++ P+K R E L+R H +
Sbjct: 352 MENQGWIAPADCVEVRVTLTDDERLAYAMAE-SEERYRFCATTPSKSRVTEALVRRHLDE 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+++V + L E L P+I G T ER ++ QAF+ +++ + +SKV +
Sbjct: 411 ---QVLVIGQYIDQLDELGEHLNAPVIKGETKVKERERLFQAFR-DKEIQVLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K GG A FYS+VS DT
Sbjct: 467 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPKAD------GG----GARFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY++++I +
Sbjct: 517 VDQDFAAHRQRFLAEQGYAYQIIDA 541
>gi|261405781|ref|YP_003242022.1| type III restriction protein res subunit [Paenibacillus sp.
Y412MC10]
gi|261282244|gb|ACX64215.1| type III restriction protein res subunit [Paenibacillus sp.
Y412MC10]
Length = 595
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 135/392 (34%), Positives = 220/392 (56%), Gaps = 22/392 (5%)
Query: 27 RPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
R YQ+K+ G +G++VLPCGAGK+++G++A ++ L L +N SV QW
Sbjct: 202 RDYQQKAAESFRDIGGEGGNGVLVLPCGAGKTVIGIAAMRELQCETLILTSNTTSVRQWI 261
Query: 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE 145
+ +T+ D+I ++ K+ V V TY+++ + EE + + + R
Sbjct: 262 AELMQKTTLSVDEIGEYSGQRKQ----VRPVTVATYHILTHRQGKGEEQQHM-KLFNERR 316
Query: 146 WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL 205
WGL++ DEVH++PA +FR + + +LGLTATLVRED R +D+ LIGPK YE W
Sbjct: 317 WGLIIYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGRESDVFSLIGPKRYEMPWK 375
Query: 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
L G+IA+V C E+ P+ E E + N +++ L NP+K L+ H+
Sbjct: 376 RLEAQGWIASVTCTEIKVPLPDE-IREACETANKREQYRLAAENPSKLDVIRQLVDVHKD 434
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
+ I + D L A++ +L+ P+I G + +R + AF+ ++ + +SKV +
Sbjct: 435 AQTLIIGQYLDQLHAISR---ELQAPLITGQMTQDQRNEWYNAFREG-NIRVLVVSKVAN 490
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
++D+P+A+V I++S GSR++EAQRLGR+LR K E A+FY+LV+ D
Sbjct: 491 FAVDLPDASVAIEVSGSYGSRQEEAQRLGRLLRPKSG----------ENRAYFYALVTED 540
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
++E ++ +RQ FLI+QGY + I + P S
Sbjct: 541 SREEIFAIRRQLFLIEQGYEYHAIHAKQPAAS 572
>gi|183984638|ref|YP_001852929.1| DNA helicase Ercc3 [Mycobacterium marinum M]
gi|183177964|gb|ACC43074.1| DNA helicase Ercc3 [Mycobacterium marinum M]
Length = 549
Score = 233 bits (593), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 228/403 (56%), Gaps = 30/403 (7%)
Query: 7 FRNDNVNPDLNMELKPHA-QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
+ N +P + L+P + R YQ+ + + G SG++VLPCGAGK+LVG +A
Sbjct: 165 YVNGEAHP---ISLQPDGWELRDYQQLATDSFWAGG---SGVVVLPCGAGKTLVGAAAMA 218
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ + + L L TN V+ QW + +++ +++I ++ + KE V ++TY M+
Sbjct: 219 KAQATTLILVTNIVAARQWKRELVARTSLTEEEIGEYSGERKE----IRPVTISTYQMIT 274
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
+RS+ + +E +R+WGL++ DEVH++PA +FR L +S +LGLTATL+RED
Sbjct: 275 ---RRSKGEYRHLELFDSRDWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIRED 330
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
R D+ LIGPK Y+A W D+ G+IA +C EV MT Y E ++ +
Sbjct: 331 GREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECVEVRVTMTDSERMTYATAEPEERYRLC 390
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKI 305
++ K + +++ H G++ +V L L E +L P+I GAT ER +
Sbjct: 391 STVH-TKIAVVKSILQRHP---GEQTLVIGAYLDQLEELGTELDAPVIQGATKTREREAL 446
Query: 306 LQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLED 365
AF+ ++ T+ +SKV + SID+PEA+V +Q+S GSR++EAQRLGR+LR K
Sbjct: 447 FDAFRRG-EIATLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD--- 502
Query: 366 RMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
GG A FYS+V+ D+ + Y+ RQ+FL +QGY + +
Sbjct: 503 ---GG----GAMFYSVVARDSLDAEYAAHRQRFLAEQGYGYII 538
>gi|443492737|ref|YP_007370884.1| DNA helicase Ercc3 [Mycobacterium liflandii 128FXT]
gi|442585234|gb|AGC64377.1| DNA helicase Ercc3 [Mycobacterium liflandii 128FXT]
Length = 549
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/403 (35%), Positives = 228/403 (56%), Gaps = 30/403 (7%)
Query: 7 FRNDNVNPDLNMELKPHA-QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
+ N +P + L+P + R YQ+ + + G SG++VLPCGAGK+LVG +A
Sbjct: 165 YVNGEAHP---ISLQPDGWELRDYQQLATDSFWAGG---SGVVVLPCGAGKTLVGAAAMA 218
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ + + L L TN V+ QW + +++ +++I ++ + KE V ++TY M+
Sbjct: 219 KAQATTLILVTNIVAARQWKRELVARTSLTEEEIGEYSGERKE----IRPVTISTYQMIT 274
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
+RS+ + +E +R+WGL++ DEVH++PA +FR L +S +LGLTATL+RED
Sbjct: 275 ---RRSKGEYRHLELFDSRDWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIRED 330
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
R D+ LIGPK Y+A W D+ G+IA +C EV MT Y E ++ +
Sbjct: 331 GREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECVEVRVTMTDSERMTYATAEPEERYRLC 390
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKI 305
++ K + +++ H G++ +V L L E +L P+I GAT ER +
Sbjct: 391 STVH-TKIAVVKSILQRHP---GEQTLVIGAYLDQLEELGTELDAPVIQGATKTREREAL 446
Query: 306 LQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLED 365
AF+ ++ T+ +SKV + SID+PEA+V +Q+S GSR++EAQRLGR+LR K
Sbjct: 447 FDAFRRG-EIATLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD--- 502
Query: 366 RMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
GG A FYS+V+ D+ + Y+ RQ+FL +QGY + +
Sbjct: 503 ---GG----GAMFYSVVARDSLDAEYAAHRQRFLAEQGYGYII 538
>gi|359764529|ref|ZP_09268374.1| putative ATP-dependent DNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
gi|359318081|dbj|GAB21207.1| putative ATP-dependent DNA helicase [Gordonia polyisoprenivorans
NBRC 16320]
Length = 548
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 176 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 233 ELVARTTLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 285
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 286 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 344
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y EN K Y + + +
Sbjct: 345 IEAQGWIAPAECIEVRVTLTDEERLQYAVAENEAK----YKLCSTAHTKVNVVRSILARH 400
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R + +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 401 RDSQTLVIGAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANF 459
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 460 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GGQ----AHFYSVVSRDT 509
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 510 LDADYAAHRQRFLAEQGYAYRI 531
>gi|145596461|ref|YP_001160758.1| helicase domain-containing protein [Salinispora tropica CNB-440]
gi|145305798|gb|ABP56380.1| helicase domain protein [Salinispora tropica CNB-440]
Length = 581
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 223/383 (58%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 211 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 267
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 268 ELVARTSLTEEEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 320
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 321 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 379
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA +C EV +T+ Y E ++++ + K + L+ H +
Sbjct: 380 IEQQGWIAPARCTEVRVTLTEAERMAYATAE-AEERYRMAATTRTKLPVVKALLDRHPDE 438
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L EY L P++ GAT++ ER ++ AF+ S +L T+ +SKVG+
Sbjct: 439 QTLVIGGYIDQLHQLGEY---LDAPIVQGATTNRERERLFDAFR-SGELRTLVISKVGNF 494
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 495 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 544
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 545 IDTEYAAHRQRFLAEQGYAYTIV 567
>gi|451335877|ref|ZP_21906442.1| DNA repair helicase [Amycolatopsis azurea DSM 43854]
gi|449421769|gb|EMD27176.1| DNA repair helicase [Amycolatopsis azurea DSM 43854]
Length = 548
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 142/383 (37%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ K+ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RDYQRKAAEAFWAGG---SGVVVLPCGAGKTLVGAAAMAHAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY +V ++++ + ++ +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRHLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++++ L K + + L+ H
Sbjct: 352 IEAQGWIAPAECTEVRVTLTDAERLAYATAE-AEERYKLAATADTKTKVIKSLVDRHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L +L P+I GAT + ER ++ AF+ ++ T+ +SKV +
Sbjct: 409 -GEPTLVIGAYLDQLEMIGDELDAPVIQGATRNKEREELFDAFRRG-EIRTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQIS GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEASVAIQISGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYRIV 539
>gi|383775537|ref|YP_005460103.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
gi|381368769|dbj|BAL85587.1| putative ATP-dependent DNA helicase [Actinoplanes missouriensis
431]
Length = 553
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 147/395 (37%), Positives = 228/395 (57%), Gaps = 35/395 (8%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RSYQQEAVDGFWAGG---SGVVVLPCGAGKTLVGAAAMATAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 240 ELIARTSLTEDEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVIYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++++ + K + L+ E+
Sbjct: 352 IEAQGWIAPAECVEVRVTLTDAERMAYAVTE-AEERYRVAASARTKLPVVKALV---EKH 407
Query: 267 RGDKIIV---FADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
G++++V F D L L EY L P++ G+T++ ER ++ AF+ L T+ LSKV
Sbjct: 408 PGEQVLVIGGFLDQLHELGEY---LDAPIVQGSTTNKERERLFDAFRDG-SLRTLVLSKV 463
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
G+ SID+PEA V IQ+S GSR++EAQRLGR+LR KG G++ A FY++VS
Sbjct: 464 GNFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPKGD-------GRQ---AHFYTVVS 513
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVITS---LPPP 415
DT + Y+ RQ+FL +QGY++ ++ + L PP
Sbjct: 514 RDTIDTEYAAHRQRFLAEQGYAYTIVDADDVLGPP 548
>gi|380301717|ref|ZP_09851410.1| DNA/RNA helicase, superfamily II [Brachybacterium squillarum M-6-3]
Length = 554
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/395 (36%), Positives = 219/395 (55%), Gaps = 28/395 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ G SG++VLPCGAGK+LVG A + ++ L L T+ VS QW
Sbjct: 183 RPYQQEAVDGFRHGG---SGVVVLPCGAGKTLVGAGAMAAMGRTTLILVTSTVSARQWKA 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ +KE R V + TY ++ + + +E + R+W
Sbjct: 240 ELLRRTTLTEDEIGEYSGTTKE-IR---PVTIATYQVLT---AKRKGVHPHLELMSARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV M E Y E + + L + K L H
Sbjct: 352 IEAQGYIAPAECTEVRVSMPAEDRMAYAMAEAEDRPR-LGAAHGAKVPVVRALAERHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ ++V L L E + +L +I G T R ++ AF+ +++ + +SKV +
Sbjct: 409 -GEPLLVIGQYLDQLEEISTELGAELITGQTPVKRRQQLFDAFRAG-EIDRLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K A G+ A FY++V DT
Sbjct: 467 SIDLPEASVAIQVSGAFGSRQEEAQRLGRLLRPK-------ADGR---AAHFYTVVMRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS--LPPPDSGA 419
+ Y+ RQ+FL +QGY++ +I + LP P A
Sbjct: 517 VDQDYAAHRQRFLAEQGYAYAIIDAEDLPTPSGTA 551
>gi|302535925|ref|ZP_07288267.1| ATP-dependent DNA helicase [Streptomyces sp. C]
gi|302444820|gb|EFL16636.1| ATP-dependent DNA helicase [Streptomyces sp. C]
Length = 547
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQAQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAKAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ K +E +R+W
Sbjct: 239 ELVRRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLTTKRKGVYPH---LELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + K + E L+R H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTATKRKVTEALVRKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG++ +V + L E L P+I G TS+ +R K+ AF+ ++N + +SKV +
Sbjct: 407 RGEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFNAFREG-EINVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|296169623|ref|ZP_06851243.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
parascrofulaceum ATCC BAA-614]
gi|295895889|gb|EFG75584.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
parascrofulaceum ATCC BAA-614]
Length = 549
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQQMATDSFWSGG---SGVVVLPCGAGKTLVGAAAMAKASATTLILVTNVVAARQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D++ ++ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 240 ELVARTSLTEDEVGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + + +K + ++ H
Sbjct: 352 IEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTAH-SKIAVVKSVLSRHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER ++ AF+ +++T+ +SKV +
Sbjct: 409 -GEQTLVIGAYLDQLDELGAELNAPVIQGSTRTKEREELFDAFRRG-EVSTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+ D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVARDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYII 538
>gi|404421548|ref|ZP_11003263.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
gi|403658859|gb|EJZ13553.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
fortuitum subsp. fortuitum DSM 46621]
Length = 542
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 142/384 (36%), Positives = 218/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQEMAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R
Sbjct: 231 KRELVARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K ++ H
Sbjct: 343 KDIEAQGWIAPAECIEVRVTMTDNERMLYATAEPEERYKLCSTVH-TKIAVVRSILERHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V L L E +L P+I G+T + ER + AF+ +++T+ +SKV
Sbjct: 402 ---GEPTLVIGAYLDQLEELGQELNAPVIQGSTKNAEREALFDAFRRG-EISTLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K AGG A FYS+VS
Sbjct: 458 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK-------AGGG---GAVFYSVVSR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYVI 531
>gi|377562511|ref|ZP_09791902.1| putative ATP-dependent DNA helicase [Gordonia otitidis NBRC 100426]
gi|441508856|ref|ZP_20990778.1| putative ATP-dependent DNA helicase [Gordonia aichiensis NBRC
108223]
gi|377520337|dbj|GAB37067.1| putative ATP-dependent DNA helicase [Gordonia otitidis NBRC 100426]
gi|441446861|dbj|GAC48739.1| putative ATP-dependent DNA helicase [Gordonia aichiensis NBRC
108223]
Length = 555
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 220/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T E +Y EN +K + L K + ++ H
Sbjct: 352 IEAQGWIAPADCIEVRVTLTDEERLQYAVAENEEKYK-LCSTAHTKVNVVKSILAKHA-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G + +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 409 -GSQTLVIGAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K K+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK----------KDGGQAHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|428317195|ref|YP_007115077.1| type III restriction protein res subunit [Oscillatoria
nigro-viridis PCC 7112]
gi|428240875|gb|AFZ06661.1| type III restriction protein res subunit [Oscillatoria
nigro-viridis PCC 7112]
Length = 561
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 222/385 (57%), Gaps = 25/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+++ + +G + SG IVLPCGAGK++VG+ A +K+ L L ++ SV QW
Sbjct: 193 RAYQQEAAEAFYQDGEVKGGSGTIVLPCGAGKTIVGMLAMSLVKQKTLILTSSLTSVHQW 252
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D I ++S +K+ A V ++TY M+++ + +E E+ N
Sbjct: 253 RREILDKTSLTEDAIAEYSSVTKQ----TAAVTLSTYQMLSYRSNKDDEFPHF--ELFNA 306
Query: 145 E-WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
E WGL++ DEVH++PA +FR L ++ +LGLTATL+RED + D+ LIGPK Y+
Sbjct: 307 ESWGLIIYDEVHLLPAPIFRITAEL-QARRRLGLTATLIREDGKEGDVFTLIGPKRYDVP 365
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L GFIA C E+ + EY + + + NP K + L+
Sbjct: 366 WRELEGQGFIATANCTEIRVAQNEAEKMEYALAPR-RNQFRIAAENPAKLDVVQSLL--- 421
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
+++ G +I++ + L L A P+I G T +R ++ +AF+ +++ + LS+V
Sbjct: 422 QKEAGHRILIIGEYLEQLDAIAKMTELPLITGKTKQADRDRLYEAFR-HKEIPGLILSRV 480
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
G+ ++D+P+A+V+IQ+S GSR++EAQRLGRILR K + +NA FY+LVS
Sbjct: 481 GNFAVDLPDADVLIQVSGKYGSRQEEAQRLGRILRPK----------SDGHNASFYTLVS 530
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ FL +QGY++++
Sbjct: 531 LQTCEEDFARHRQLFLTEQGYNYRI 555
>gi|345015973|ref|YP_004818327.1| helicase [Streptomyces violaceusniger Tu 4113]
gi|344042322|gb|AEM88047.1| helicase domain-containing protein [Streptomyces violaceusniger Tu
4113]
Length = 549
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQTQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMATAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE + + TY ++ + + +E +R+W
Sbjct: 239 ELVRRTSLTEEEIGEYSGTRKE----IRPITIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + + +K + E L+ H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTEAERLTYATAETDEKYRYCATTD-SKRKVTEALVARH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G + +V + L E L P+I G T++ +R K+ AF+ +L+ + +SKV +
Sbjct: 407 KGQQTLVIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRQG-ELSVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHPAVFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIV 538
>gi|296138541|ref|YP_003645784.1| type III restriction protein res subunit [Tsukamurella
paurometabola DSM 20162]
gi|296026675|gb|ADG77445.1| type III restriction protein res subunit [Tsukamurella
paurometabola DSM 20162]
Length = 556
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/394 (36%), Positives = 228/394 (57%), Gaps = 27/394 (6%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L+ E P + R YQ+ + + G SG++VLPCGAGK++VG +A R + + L L
Sbjct: 175 LDTETDPW-ELRDYQKTAADSFWLGG---SGVVVLPCGAGKTMVGAAAMARAQATTLILV 230
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE 135
TN V+ QW + +++ +++I ++ + KE R V + TY ++ ++S+
Sbjct: 231 TNTVAGRQWKRELLARTSLTEEEIGEYSGEKKE-IRP---VTIATYQVLT---RKSKGEY 283
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
K ++ +R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LI
Sbjct: 284 KNLDLFDSRDWGLMIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLI 342
Query: 196 GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255
GPK Y+A W D+ G+IA C EV +T+ +Y E ++ + L P K
Sbjct: 343 GPKRYDAPWKDIEAQGWIAPADCVEVRVTLTENQRMQYATAEPDERYK-LASTAPAKSAV 401
Query: 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDL 315
+ ++ E+ RG + +V + L E L P+I G+T ER + AF+ ++
Sbjct: 402 VKAIL---ERHRGAQTLVIGAYIDQLEELGAALDAPVIQGSTKTKEREALFDAFRRG-EI 457
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375
+T+ +SKV + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG
Sbjct: 458 STLVVSKVANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GG----T 507
Query: 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
A FYS+VS DT + Y+ RQ+FL +QGY+++++
Sbjct: 508 AHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRIV 541
>gi|429729359|ref|ZP_19264022.1| helicase protein [Corynebacterium durum F0235]
gi|429149767|gb|EKX92735.1| helicase protein [Corynebacterium durum F0235]
Length = 553
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 143/383 (37%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 185 RDYQRFAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWRD 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY +V ++++ + +E +R+W
Sbjct: 242 ELLRRTSLTEEEIGEYSGEKKE----IRPVTIATYQVVT---RKTKGEYRALELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED D+ LIGPK Y+A W D
Sbjct: 295 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGLEGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MTK Y E S + + L K + + L+ EQ
Sbjct: 354 IEAQGYIAAAECVEVRVTMTKAERMAYATAERSVRYR-LAACAETKNKVVKKLV---EQH 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G+ +V + L E L P+I G TS+ +R ++ AF+ LN + +SKV +
Sbjct: 410 KGEPTLVIGAYIDQLEELGGILDAPVIDGKTSNKKREELFDAFRKG-TLNVLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G+E A FY++VS DT
Sbjct: 469 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPK-------ANGRE---ALFYTVVSRDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 519 LDTEYAAHRQRFLAEQGYAYRIV 541
>gi|383639665|ref|ZP_09952071.1| ATP-dependent DNA helicase [Streptomyces chartreusis NRRL 12338]
Length = 547
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + + K + L L TN VS QW
Sbjct: 182 RPYQKQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAQAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVRRTSLTEDEIGEYSGTKKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIVYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +++K K + E ++R +
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDAERLAYATAE-AEEKYRFCATTDTKRKVTEAIVR---RF 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 407 AGQQILVIGQYIDQLDELGEHLGAPVIKGETSNAQREKLFDAFR-EGEISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK----------SDGHQAHFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIM 538
>gi|418419027|ref|ZP_12992212.1| DNA helicase [Mycobacterium abscessus subsp. bolletii BD]
gi|364002200|gb|EHM23392.1| DNA helicase [Mycobacterium abscessus subsp. bolletii BD]
Length = 550
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 183 RDYQQMAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 240 ELLARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + L K + ++ H
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDNERMIYATAEADERYK-LCSTAHTKINVVKSILARHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V L L E +L P+I G+T + ER + AF+ ++ T+ +SKV +
Sbjct: 409 -GAPTLVIGAYLDQLDELGAELDAPVIQGSTKNAEREALFDAFRRG-EIGTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A+FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GGQ----AYFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY +++
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYRI 538
>gi|169627959|ref|YP_001701608.1| DNA helicase [Mycobacterium abscessus ATCC 19977]
gi|365868780|ref|ZP_09408329.1| DNA helicase [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|414584053|ref|ZP_11441193.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1215]
gi|418250922|ref|ZP_12877134.1| DNA helicase [Mycobacterium abscessus 47J26]
gi|419710724|ref|ZP_14238189.1| DNA helicase [Mycobacterium abscessus M93]
gi|419714657|ref|ZP_14242071.1| DNA helicase [Mycobacterium abscessus M94]
gi|420862860|ref|ZP_15326254.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0303]
gi|420867257|ref|ZP_15330643.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RA]
gi|420871691|ref|ZP_15335071.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RB]
gi|420881318|ref|ZP_15344685.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0304]
gi|420881914|ref|ZP_15345278.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0421]
gi|420887751|ref|ZP_15351107.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0422]
gi|420893040|ref|ZP_15356383.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0708]
gi|420902683|ref|ZP_15366014.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0817]
gi|420903476|ref|ZP_15366799.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1212]
gi|420913517|ref|ZP_15376829.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-R]
gi|420914723|ref|ZP_15378029.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-S]
gi|420920523|ref|ZP_15383820.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-S]
gi|420925608|ref|ZP_15388896.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-1108]
gi|420930047|ref|ZP_15393324.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-151-0930]
gi|420938886|ref|ZP_15402155.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-152-0914]
gi|420940295|ref|ZP_15403560.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-153-0915]
gi|420945886|ref|ZP_15409139.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-154-0310]
gi|420950472|ref|ZP_15413718.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0626]
gi|420954640|ref|ZP_15417880.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0107]
gi|420960178|ref|ZP_15423408.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-1231]
gi|420965152|ref|ZP_15428368.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0810-R]
gi|420970428|ref|ZP_15433628.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0921]
gi|420975958|ref|ZP_15439143.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0212]
gi|420981334|ref|ZP_15444507.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-R]
gi|420985956|ref|ZP_15449119.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0206]
gi|420990622|ref|ZP_15453775.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0307]
gi|420996443|ref|ZP_15459584.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-R]
gi|421000872|ref|ZP_15464005.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-S]
gi|421005871|ref|ZP_15468987.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0119-R]
gi|421011380|ref|ZP_15474478.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-R]
gi|421016200|ref|ZP_15479269.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-S]
gi|421021800|ref|ZP_15484851.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0731]
gi|421027459|ref|ZP_15490498.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-R]
gi|421032529|ref|ZP_15495553.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-S]
gi|421038231|ref|ZP_15501242.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-R]
gi|421046892|ref|ZP_15509892.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-S]
gi|421047622|ref|ZP_15510618.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense CCUG 48898 =
JCM 15300]
gi|169239926|emb|CAM60954.1| Probable DNA helicase [Mycobacterium abscessus]
gi|353449547|gb|EHB97944.1| DNA helicase [Mycobacterium abscessus 47J26]
gi|363999710|gb|EHM20912.1| DNA helicase [Mycobacterium massiliense CCUG 48898 = JCM 15300]
gi|382940723|gb|EIC65046.1| DNA helicase [Mycobacterium abscessus M93]
gi|382945347|gb|EIC69643.1| DNA helicase [Mycobacterium abscessus M94]
gi|392074380|gb|EIU00217.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RA]
gi|392074534|gb|EIU00370.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0303]
gi|392075880|gb|EIU01713.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0726-RB]
gi|392086227|gb|EIU12052.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0304]
gi|392090969|gb|EIU16780.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0421]
gi|392093358|gb|EIU19156.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0422]
gi|392100044|gb|EIU25838.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0817]
gi|392106804|gb|EIU32588.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0708]
gi|392110021|gb|EIU35794.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1212]
gi|392115511|gb|EIU41280.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-R]
gi|392119205|gb|EIU44973.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-1215]
gi|392124797|gb|EIU50556.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0125-S]
gi|392130359|gb|EIU56105.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-S]
gi|392140159|gb|EIU65889.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-151-0930]
gi|392140683|gb|EIU66410.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-1108]
gi|392144401|gb|EIU70126.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-152-0914]
gi|392156727|gb|EIU82427.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-153-0915]
gi|392159094|gb|EIU84790.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 1S-154-0310]
gi|392160249|gb|EIU85940.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0626]
gi|392173038|gb|EIU98707.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0212]
gi|392174857|gb|EIV00522.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 5S-0921]
gi|392177132|gb|EIV02790.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 6G-0728-R]
gi|392188760|gb|EIV14395.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0206]
gi|392190644|gb|EIV16274.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-R]
gi|392190807|gb|EIV16435.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0307]
gi|392203026|gb|EIV28622.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0912-S]
gi|392203341|gb|EIV28935.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0119-R]
gi|392212690|gb|EIV38250.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-R]
gi|392216822|gb|EIV42361.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0122-S]
gi|392217370|gb|EIV42908.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0731]
gi|392226445|gb|EIV51959.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-R]
gi|392232116|gb|EIV57619.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-S]
gi|392233419|gb|EIV58918.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0930-R]
gi|392236345|gb|EIV61843.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 4S-0116-S]
gi|392241787|gb|EIV67274.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense CCUG 48898]
gi|392256246|gb|EIV81705.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-1231]
gi|392256433|gb|EIV81890.1| putative DNA HELICASE ERCC3 [Mycobacterium massiliense 2B-0107]
gi|392258131|gb|EIV83578.1| putative DNA HELICASE ERCC3 [Mycobacterium abscessus 3A-0810-R]
Length = 550
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 183 RDYQQMAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 240 ELLARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + L K + ++ H
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDNERMIYATAEADERYK-LCSTAHTKINVVKSILARHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V L L E +L P+I G+T + ER + AF+ ++ T+ +SKV +
Sbjct: 409 -GAPTLVIGAYLDQLDELGTELDAPVIQGSTKNAEREALFDAFRRG-EIGTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A+FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GGQ----AYFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY +++
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYRI 538
>gi|389862535|ref|YP_006364775.1| DNA helicase, superfamily II [Modestobacter marinus]
gi|388484738|emb|CCH86278.1| Putative DNA helicase, superfamily II [Modestobacter marinus]
Length = 561
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A K + L L TN VS QW
Sbjct: 183 RDYQQEAVDGFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVSGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ R + + ++ ++W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---TRRKGEYRHLDLFDAQDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRLTADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV + E Y E ++ Y + + R E+
Sbjct: 352 IEAQGYIAPAECIEVRVSLDDEERMTYAVAEPEER----YRIAATAQSKLPVIRRVLERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ +V L L E L P+I G+T++ ER ++ QAF+ ++ T+ +SKV +
Sbjct: 408 PDEQKLVIGAYLDQLDELGTALDAPVIQGSTTNTERERLFQAFRVG-EIKTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 467 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 517 LDSEYAAHRQRFLAEQGYAYTIV 539
>gi|357021039|ref|ZP_09083270.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
thermoresistibile ATCC 19527]
gi|356478787|gb|EHI11924.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
thermoresistibile ATCC 19527]
Length = 549
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 217/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 181 QLRDYQQMAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAEATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ +RS+ K +E +R
Sbjct: 238 KRELIARTSLTENEIGEYSGERKE----IRPVTIATYQVIT---RRSKGVYKHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ Y + + E
Sbjct: 350 KDIEAQGWIAPAECIEVRVTMTDNERMLYATAEPEER----YKLCSTAHTKVAVVKSILE 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +G++ +V L L E +L P+I G+T ER + AF+ +++T+ +SKV
Sbjct: 406 RHQGEQTLVIGAYLEQLEELGRELDAPVIQGSTKTAEREALFDAFRRG-EISTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYII 538
>gi|377564040|ref|ZP_09793368.1| putative ATP-dependent DNA helicase [Gordonia sputi NBRC 100414]
gi|377528930|dbj|GAB38533.1| putative ATP-dependent DNA helicase [Gordonia sputi NBRC 100414]
Length = 558
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 186 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWKR 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 243 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 296 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T E +Y EN +K + L K + ++ H
Sbjct: 355 IEAQGWIAPADCVEVRVTLTDEERLQYAVAENEEKYK-LCSTAHTKVNVVKSILAKHA-- 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 412 -GSPTLVIGAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K K+ A FYS+VS DT
Sbjct: 470 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK----------KDGGQAHFYSVVSRDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 520 LDADYAAHRQRFLAEQGYAYRI 541
>gi|390453266|ref|ZP_10238794.1| DNA or RNA helicase of superfamily II [Paenibacillus peoriae KCTC
3763]
Length = 585
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 219/391 (56%), Gaps = 30/391 (7%)
Query: 23 HAQPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSV 81
Q R YQ ++ G +G SG++VLPCGAGK+++G++ R++ L L +N SV
Sbjct: 195 QVQLRDYQVEAADAFEGADGLGGSGVLVLPCGAGKTVIGMAVMDRLQCEVLILTSNTTSV 254
Query: 82 DQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE----KI 137
QW + K + I + I ++ KE + V TY ++ +RS++ + K+
Sbjct: 255 RQWIEELKQKTDIPVNSIGEYSGQKKE----VRPITVATYQILTH--RRSKDGDFDHMKL 308
Query: 138 IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGP 197
+ E R+WGL++ DEVH++PA +FR + + +LGLTATLVRED D+ LIGP
Sbjct: 309 LSE---RKWGLIVYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGCERDVFSLIGP 364
Query: 198 KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257
K Y+ W +L + G+IA V C E+ PMT E ++ E +++ + NP K A
Sbjct: 365 KRYDMPWKELERQGWIAQVDCVELRLPMTAELLERSMRAEG-RQQYRIAAENPAKLEAVR 423
Query: 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNT 317
L++ H G ++ L L A +L P+I GA S ER + AF+ + T
Sbjct: 424 SLMQRHT---GLPTLIIGQYLDQLRTLAQELGVPLITGAMSQSERVRWFDAFRKG-TIRT 479
Query: 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377
+ +SKV + ++D+P+A + I++S GSR++EAQRLGRILR K E A+
Sbjct: 480 LLVSKVANFAVDLPDAAIAIEVSGSFGSRQEEAQRLGRILRPK----------PGENKAY 529
Query: 378 FYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
FY+LV+ +++E ++ +RQ FLI+QGY + V
Sbjct: 530 FYALVTENSRETDFAARRQLFLIEQGYEYAV 560
>gi|15828157|ref|NP_302420.1| DNA helicase [Mycobacterium leprae TN]
gi|221230634|ref|YP_002504050.1| DNA helicase [Mycobacterium leprae Br4923]
gi|13093711|emb|CAC31112.1| probable DNA helicase [Mycobacterium leprae]
gi|219933741|emb|CAR72254.1| probable DNA helicase [Mycobacterium leprae Br4923]
Length = 549
Score = 231 bits (590), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 216/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V QW
Sbjct: 181 QLRDYQRLAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKTGATTLILVTNIVVARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE R V ++TY M+ R++ + +E +R
Sbjct: 238 KRELITHTSLTEDEIGEYSGERKE-IRP---VTISTYQMITH---RTKGEYRHLELFNSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+ W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDTPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA +C EV +T Y E ++ + + +K + ++ H
Sbjct: 350 KDLEEQGWIAPAKCVEVRVTLTNNERMTYATAEPEERYRVCSTAH-SKIAVVKSVLSRHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++ +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 409 ---GEQTLVIGAYLDQLNELGSELNAPIIQGSTRTKEREALFDAFRRG-EVFTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+
Sbjct: 465 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGYS+ +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYSYII 538
>gi|354582460|ref|ZP_09001362.1| type III restriction protein res subunit [Paenibacillus lactis 154]
gi|353199859|gb|EHB65321.1| type III restriction protein res subunit [Paenibacillus lactis 154]
Length = 606
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/375 (36%), Positives = 212/375 (56%), Gaps = 29/375 (7%)
Query: 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106
+IVLPCGAGK+++G++A ++ L L +N SV QW + +T+ + I ++
Sbjct: 232 VIVLPCGAGKTVIGMAAMRELQCETLILTSNTTSVRQWVDELLRKTTLTPEDIGEYSGHR 291
Query: 107 KERFRGNAGVVVTTYNMVAFGGKRSEES--EKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164
KE V V TY ++ + +E K+ E R WGL++ DEVH++PA +FR
Sbjct: 292 KE----VRPVTVATYQILTHRPGKGDEQLHMKLFNE---RRWGLIIYDEVHLLPAPVFRA 344
Query: 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 224
+ + +LGLTATL+RED R D+ LIGPK YE W +L G+IA V C EV P
Sbjct: 345 TADIQATR-RLGLTATLIREDGREHDVFSLIGPKRYEMPWKELEDQGWIAEVDCLEVKVP 403
Query: 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 284
MT +YL +++ L NP+K LIR E+ G +I++ L L
Sbjct: 404 MTSHLKEKYLAA-GKREQYRLAAENPSKLST---LIRLVERHPGAQILIIGQYLDQLKAI 459
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A +L+ P+I G + ER AF+ S + + +SKV + ++D+P+A+V I++S G
Sbjct: 460 ADRLQAPLITGRMAQNERHAWYAAFR-SGETRLLVVSKVANFAVDLPDASVAIEVSGSYG 518
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SR++EAQRLGR+LR K + E A FY+LV+ D++E F++ +R+ FLI+QGY
Sbjct: 519 SRQEEAQRLGRLLRPK----------QGENKAHFYTLVTEDSREEFFALRRRMFLIEQGY 568
Query: 405 SFKVIT----SLPPP 415
++ +T ++P P
Sbjct: 569 EYRTMTVMEGAVPAP 583
>gi|440704816|ref|ZP_20885643.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
gi|440273502|gb|ELP62235.1| DEAD/DEAH box helicase [Streptomyces turgidiscabies Car8]
Length = 554
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 217/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG + K + L L TN VS QW
Sbjct: 186 RPYQQQAVENFWHGG---SGVVVLPCGAGKTLVGAGSMAEAKATTLILVTNTVSARQWKH 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + +E +R+W
Sbjct: 243 ELVKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLT---TRRKGVYPHLELFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 296 GLIIYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + K + E ++R +
Sbjct: 355 IEAQGYIAPADCVEVRVNLTESERISYATAETEEKYR-FCATTATKRKVTEAIVR---RF 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +I+V + L E L P+I G T + +R K+ AF+ +++ + +SKV +
Sbjct: 411 AGQQILVIGQYIDQLDELGEHLNAPVIKGETPNSQREKLFDAFR-EGEISVLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 470 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHKAHFYSVVARDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 520 IDQDFAAHRQRFLAEQGYAYRIM 542
>gi|381163282|ref|ZP_09872512.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
gi|418461379|ref|ZP_13032454.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|359738482|gb|EHK87367.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea SZMC
14600]
gi|379255187|gb|EHY89113.1| DNA/RNA helicase, superfamily II [Saccharomonospora azurea NA-128]
Length = 548
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 183 RDYQRQAAETFWAGG---SGVVVLPCGAGKTLVGAAAMAQAEATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 240 ELVERTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + L K + ++ E+
Sbjct: 352 IEAQGWIAPAECVEVRVTLTDAERLGYATAEADERYR-LASTARTKIGVVKSIV---ERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P++ G+T + ER + AF+ +++ + +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEELGAELNAPVVQGSTKNKEREALFDAFRRG-EIDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEASVAIQMSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 517 VDTDYAAHRQRFLAEQGYAYHIV 539
>gi|148273657|ref|YP_001223218.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831587|emb|CAN02555.1| putative ATP-dependent DNA helicase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 554
Score = 231 bits (589), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 214/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ G SG++VLPCGAGK+LVG +A R K + L L TN VS QW
Sbjct: 191 RGYQTDAVDHFLDGG---SGVVVLPCGAGKTLVGAAAMARAKTTTLILVTNTVSARQWRS 247
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ S+E V + TY ++ K +++ + +W
Sbjct: 248 ELLKRTTLTEDEIGEYSGQSRE----VKPVTIATYQILTAKRKGEYAHLSLLDAL---DW 300
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 301 GLVVYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 359
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ +C EV + E Y + ++ + L P K L+ E+
Sbjct: 360 IEAQGFISPAECFEVRIDLPDEDRLVYAAAADDERYR-LAATAPAKLDVTRALV---ERH 415
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG+ I+V L + E A L P + GAT ER ++ QAF+ + + +SKV +
Sbjct: 416 RGESILVIGQYLEQIDELAEALGAPKLTGATPVAERERLYQAFRDGTE-RVLVVSKVANF 474
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+P+A V IQ+S GSR++EAQRLGR+LR + A G +A FY+LVS DT
Sbjct: 475 SVDLPDATVAIQVSGSFGSRQEEAQRLGRLLRPE-------ASG---MSASFYTLVSRDT 524
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGYS+ ++
Sbjct: 525 VDQDFAQNRQRFLAEQGYSYTIL 547
>gi|444306441|ref|ZP_21142206.1| helicase [Arthrobacter sp. SJCon]
gi|443481233|gb|ELT44163.1| helicase [Arthrobacter sp. SJCon]
Length = 548
Score = 231 bits (589), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 218/387 (56%), Gaps = 26/387 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ + + G SG++VLPCGAGK+LVG +A + L L TN V+ QW
Sbjct: 181 QLRPYQRLASENFWAGG---SGVVVLPCGAGKTLVGAAAMATGSTTTLILVTNTVAARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ D+I ++ KE V + TY ++ R +E +
Sbjct: 238 KDELLKRTSLTADEIGEYSGAVKE----VRPVTIATYQVLT---TRRGGLYPHLELVDGH 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV ++K+ Y +++ K + L + +K + E L+ H
Sbjct: 350 KDIESQGYIAPADCVEVRVDLSKDERVAYAMADDADKYR-LCSTSESKTQVVEELVARHA 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++++V + L + +L P+I G TS R ++ F+ D+ T+ +SKV
Sbjct: 409 ---GEQLLVIGQYIDQLDDLGGRLGAPVIKGDTSVKVRQRLFDEFRAG-DIQTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V IQ+S GSR++EAQRLGR+LR K K+ A FYSLV+
Sbjct: 465 NFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK----------KDGRAARFYSLVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT + ++ KRQ+FL +QGY+++++ +
Sbjct: 515 DTLDQDFAAKRQRFLAEQGYAYRIMDA 541
>gi|374607824|ref|ZP_09680624.1| type III restriction protein res subunit [Mycobacterium tusciae
JS617]
gi|373554386|gb|EHP80965.1| type III restriction protein res subunit [Mycobacterium tusciae
JS617]
Length = 552
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 186 RDYQEMATDSFWQGG---SGVVVLPCGAGKTLVGAAAMAKASATTLILVTNTVAGRQWKR 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 243 ELISRTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 296 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ +K + ++ E+
Sbjct: 355 IEAQGWIAPAECIEVRVTMTDNERMLYAVAEPDERYKLCSTVH-SKIAVVKSIL---EKH 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+GD+ +V L + E +L P+I G+T ER + F+ ++ T+ +SKV +
Sbjct: 411 KGDQTLVIGAYLDQIDELGRELNAPVIQGSTKTAEREALYDEFRRG-EIPTLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEANV +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 470 SIDLPEANVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVSRDS 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 520 LDAEYAAHRQRFLAEQGYGYII 541
>gi|332380642|gb|AEE65518.1| helicase domain protein [uncultured bacterium BAC AB649/1850]
Length = 553
Score = 231 bits (588), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 144/392 (36%), Positives = 223/392 (56%), Gaps = 29/392 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RSYQQEAVDGFWAGG---SGVVVLPCGAGKTLVGAAAMATAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVIYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + K L+ H +
Sbjct: 352 IEAQGWIAPAECTEVRVTLTDAERMTYAVTEAEERYRVAATAR-TKLPVVRALVERHPDE 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L EY L P++ G+T++ ER ++ AF+ S ++ T+ +SKVG+
Sbjct: 411 QVLVIGGYIDQLHQLGEY---LDAPIVQGSTTNKERERLFDAFR-SGEVKTLVISKVGNF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 467 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPPP 415
+ Y+ RQ+FL +QGY++ ++ + L PP
Sbjct: 517 IDTEYAAHRQRFLAEQGYAYTIVDADDVLGPP 548
>gi|337748137|ref|YP_004642299.1| ATP-dependent helicase [Paenibacillus mucilaginosus KNP414]
gi|379723001|ref|YP_005315132.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus 3016]
gi|336299326|gb|AEI42429.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus
KNP414]
gi|378571673|gb|AFC31983.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus 3016]
Length = 563
Score = 231 bits (588), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 222/384 (57%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + G + SG++VLPCGAGK+++G++A ++ + L L +N+ SV QW
Sbjct: 189 RAYQRAAVDSFYREGGTQGGSGVLVLPCGAGKTVIGIAAMGKLSCATLILTSNSTSVRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + +D + +T KE + + TY ++ K +E +E R
Sbjct: 249 KREILDKTDVTEDMVGEYTGTQKE----VRPITIATYQILTHR-KSKDEPFTHMELFNKR 303
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR V + ++ +LGLTATL+RED D+ L+GPK YE W
Sbjct: 304 DWGLIVYDEVHLLPAPVFR-VTADIQATRRLGLTATLIREDGMEQDVFSLVGPKRYEMPW 362
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA V+C E+ P+ + Y + + +++ + +NP K + + R E
Sbjct: 363 KDLESQGWIAAVECVELRVPLPEREMEAY-RSASPREQMRMASINPAKL---DLVCRLVE 418
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q +G++I++ L L + + P+I G+ +R ++ AF+ S + + +SKV
Sbjct: 419 QHKGEQILIIGQYLEQLHDLGSRTGIPVITGSMPSEKREELYDAFRKS-AIQELIVSKVA 477
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A V IQ+S GSR++EAQRLGRILR K AG + A+FY+++S
Sbjct: 478 NFAVDLPDAAVAIQVSGSYGSRQEEAQRLGRILRPK-------AGNNK---AYFYTVISE 527
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT+E ++ RQ FLI+QGY +++
Sbjct: 528 DTREQDFALNRQLFLIEQGYRYRM 551
>gi|386725786|ref|YP_006192112.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus K02]
gi|384092911|gb|AFH64347.1| putative ATP-dependent helicase [Paenibacillus mucilaginosus K02]
Length = 563
Score = 231 bits (588), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 222/384 (57%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + G + SG++VLPCGAGK+++G++A ++ + L L +N+ SV QW
Sbjct: 189 RAYQRAAVDSFYREGGTQGGSGVLVLPCGAGKTVIGIAAMGKLSCATLILTSNSTSVRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + +D + +T KE + + TY ++ K +E +E R
Sbjct: 249 KREILDKTDVTEDMVGEYTGTQKE----VRPITIATYQILTHR-KSKDEPFTHMELFNKR 303
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR V + ++ +LGLTATL+RED D+ L+GPK YE W
Sbjct: 304 DWGLIVYDEVHLLPAPVFR-VTADIQATRRLGLTATLIREDGMEQDVFSLVGPKRYEMPW 362
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA V+C E+ P+ + Y + + +++ + +NP K + + R E
Sbjct: 363 KDLESQGWIAAVECVELRVPLPEREMEAY-RSASPREQMRMASINPAKL---DLVCRLVE 418
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q +G++I++ L L + + P+I G+ +R ++ AF+ S + + +SKV
Sbjct: 419 QHKGEQILIIGQYLEQLHDLGSRTGIPVITGSMPSEKREELYDAFRKS-AIQELIVSKVA 477
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A V IQ+S GSR++EAQRLGRILR K AG + A+FY+++S
Sbjct: 478 NFAVDLPDAAVAIQVSGSYGSRQEEAQRLGRILRPK-------AGNNK---AYFYTVISE 527
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT+E ++ RQ FLI+QGY +++
Sbjct: 528 DTREQDFALNRQLFLIEQGYRYRM 551
>gi|315501497|ref|YP_004080384.1| helicase domain-containing protein [Micromonospora sp. L5]
gi|315408116|gb|ADU06233.1| helicase domain protein [Micromonospora sp. L5]
Length = 615
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 245 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 301
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 302 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 354
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 355 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 413
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA +C EV +T Y E ++++ + K L+ H +
Sbjct: 414 IEQQGWIAPAECTEVRVTLTDAERLAYATAE-AEERYRMAATARTKLPVVRALVDRHPSE 472
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I F D L L EY L P++ G+T++ ER ++ AF+ S ++ T+ +SKVG+
Sbjct: 473 QVLVIGGFLDQLHQLGEY---LDAPIVQGSTTNKERERLFDAFR-SGEIRTLVISKVGNF 528
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 529 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 578
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 579 IDTEYAAHRQRFLAEQGYAYTIV 601
>gi|84498512|ref|ZP_00997282.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
gi|84381255|gb|EAP97139.1| putative ATP-dependent DNA helicase [Janibacter sp. HTCC2649]
Length = 545
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 217/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + + L L TN VS QW
Sbjct: 183 RPYQQQAVDGFWDGG---SGVVVLPCGAGKTLVGAGAMAKASATTLILVTNTVSARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + ++ + ++W
Sbjct: 240 ELLRRTSLTEDEIGEYSGARKE----IRPVTIATYQVLT---TRRKGVYTHLDLLDAKDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED +D+ LIGPK ++A W D
Sbjct: 293 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGLESDVFSLIGPKRFDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + Y E ++ + L + K E L+ E+
Sbjct: 352 IEAQGYIAPADCVEVRVTLPDGQRMAYAVAE-AEDRYRLASCSDAKLPVVEKLV---EKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG+ +V L L E + +L +I G TS ER ++ AF+ D++ + +SKV +
Sbjct: 408 RGEPTLVIGQYLDQLDELSTRLGAEVITGETSVTERQRLYSAFRDG-DISLLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG + A FY++V+ DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPKG----------DGRTAHFYTVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 517 VDADFAAHRQRFLAEQGYAYRIV 539
>gi|254387008|ref|ZP_05002287.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
gi|194345832|gb|EDX26798.1| ATP-dependent DNA helicase [Streptomyces sp. Mg1]
Length = 547
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/385 (36%), Positives = 222/385 (57%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQQQAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMAKAKATTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ + + +E +R+W
Sbjct: 239 ELVKRTSLTEEEIGEYSGTRKE----IRPVTIATYQVLT---TKRKGVYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLILYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E +K + K + E L+R H+
Sbjct: 351 IEAQGYIAPADCVEVRVNLTESERLAYATAETEEKYR-FCATTATKRKVTEALVRKHQ-- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V + L E L P+I G TS+ +R K+ AF+ +++ + +SKV +
Sbjct: 408 -GEQTLVIGQYIDQLDELGEHLDAPVIKGETSNAQREKLFNAFREG-EISVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G E A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGHE---ARFYSVVARDT 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY+++++ S
Sbjct: 516 IDQDFAAHRQRFLAEQGYAYRIMDS 540
>gi|312194018|ref|YP_004014079.1| helicase domain-containing protein [Frankia sp. EuI1c]
gi|311225354|gb|ADP78209.1| helicase domain protein [Frankia sp. EuI1c]
Length = 545
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 223/386 (57%), Gaps = 26/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQKGAVAGFWEGG---SGVVVLPSGAGKTIVGAAAMAQASSTTLILVTNTVAGRQWRS 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R E + R+W
Sbjct: 240 ELLRRTSLTEDEIGEYSGERKE----IRPVTIATYQVMT--ARRGGEYLHL-SLFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWRE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T++ Y E ++ + + +K E L+R H
Sbjct: 352 IEAQGWIAPAECTEVRVTLTEDERMSYAVAEADERYR-MCATALSKHGVVERLVRKHS-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
GD+++V L L L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 409 -GDRVLVIGAYLDQLDALGRSLDAPVIQGSTRNKERERLFEAFRTG-EIKTLVVSKVANV 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G+ +A FY++VS DT
Sbjct: 467 SIDLPEAGVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---SAHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSL 412
+ Y+ RQ+FL +QGY++ ++ ++
Sbjct: 517 LDQEYAAHRQRFLAEQGYAYTIVDAV 542
>gi|251797763|ref|YP_003012494.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
gi|247545389|gb|ACT02408.1| type III restriction protein res subunit [Paenibacillus sp. JDR-2]
Length = 554
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 214/384 (55%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ +++ + G + SG+IVLPCGAGK++VG++A R+ + L L +NA SV QW
Sbjct: 189 RDYQREAVDLFYKEGTIQGGSGVIVLPCGAGKTIVGIAALARLNSATLILTSNATSVQQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+Q ++ +T SKE V + TY ++ K ++S ++ R
Sbjct: 249 KEELLDKTTLQPAEVGEYTGASKE----VRPVTIATYQILTH-RKSKKDSFHHMKLFSER 303
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR ++ + +LGLTATLVRED D+ LIGPK +E W
Sbjct: 304 DWGLIIYDEVHLLPAPVFRMTANIQATR-RLGLTATLVREDGCEEDVFSLIGPKQFELQW 362
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+ G IA+V+C E+ PM + SE + + L NP K L+ HE
Sbjct: 363 KTVEAEGHIASVKCTEIRVPM-DQGISELYHAAEKRSRLRLAAENPGKVPVVRQLLERHE 421
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G ++ L L A L P+I G ER + + FK S + + +SKV
Sbjct: 422 ---GTPTLIIGQYLDQLHSIADSLEVPVITGELPQNERQSLYEQFK-SGGVPVLAVSKVA 477
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A V IQIS GSR++EAQR+GRILR K G+ E A+FY++V+
Sbjct: 478 NFAVDLPDAAVAIQISGSYGSRQEEAQRIGRILRPK--------EGRNE--AWFYTIVTD 527
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT E Y+ +RQ FL++QGY +++
Sbjct: 528 DTSETEYAARRQMFLLEQGYQYEL 551
>gi|302865000|ref|YP_003833637.1| helicase domain-containing protein [Micromonospora aurantiaca ATCC
27029]
gi|302567859|gb|ADL44061.1| helicase domain protein [Micromonospora aurantiaca ATCC 27029]
Length = 596
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/383 (36%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 226 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 282
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 283 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 335
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 336 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 394
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA +C EV +T Y E ++++ + K L+ H +
Sbjct: 395 IEQQGWIAPAECTEVRVTLTDAERLAYATAE-AEERYRMAATARTKLPVVRALVDRHPSE 453
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I F D L L EY L P++ G+T++ ER ++ AF+ S ++ T+ +SKVG+
Sbjct: 454 QVLVIGGFLDQLHQLGEY---LDAPIVQGSTTNKERERLFDAFR-SGEIRTLVISKVGNF 509
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 510 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 559
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 560 IDTEYAAHRQRFLAEQGYAYTIV 582
>gi|386774129|ref|ZP_10096507.1| DNA/RNA helicase, superfamily II [Brachybacterium paraconglomeratum
LC44]
Length = 551
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 216/385 (56%), Gaps = 26/385 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ G SG++VLPCGAGK+LVG A ++++ L L TN VS QW
Sbjct: 181 QLRPYQTEAVDGFRHGG---SGVVVLPCGAGKTLVGAGAMAAMQRTTLILVTNTVSARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +D+I ++ +KE R V + TY ++ + + +E + R
Sbjct: 238 RDELLARTTLTEDEIGEYSGTTKE-IR---PVTIATYQVLTM---KRKGVHPHLELMSAR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL+L DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 291 DWGLILYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV + Y E S + + L + K E + R H
Sbjct: 350 KDIEAQGYIAPAVCTEVRVTLPASDRMAYAMAEASDRPR-LGAAHGAKVPVVERIARAHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ ++V L L E A L ++ G T R ++ F+ R ++ + +SKV
Sbjct: 409 ---GEPLLVIGQYLDQLEEIAEHLGAELLTGQTPVKRRQQLFADFREGR-IDRLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ S+D+PEA+V +Q+S GSR++EAQRLGR+LR K A G+ +A FY++V
Sbjct: 465 NFSVDLPEASVAVQVSGAFGSRQEEAQRLGRLLRPK-------ADGR---SAHFYTVVMR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DTQ+ ++ RQ+FL +QGY++ ++
Sbjct: 515 DTQDQDFAAHRQRFLAEQGYAYSIV 539
>gi|359425741|ref|ZP_09216835.1| putative ATP-dependent DNA helicase [Gordonia amarae NBRC 15530]
gi|358238908|dbj|GAB06417.1| putative ATP-dependent DNA helicase [Gordonia amarae NBRC 15530]
Length = 550
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQELAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE R V + TY ++ ++S+ K ++ +R
Sbjct: 238 KRELVARTSLTEDEIGEYSGERKE-IRP---VTIATYQVMT---RKSKGEYKNLDLFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV +T E +Y EN K Y + +
Sbjct: 350 KDIEAQGWIAPADCVEVRVTLTDEERLQYAVAENDTK----YKLCSTAHTKVNVVKAILA 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q G + ++ + L E +L P++ G+T + ER + F+ S +++T+ +SKV
Sbjct: 406 QHPGSQTLIIGAYIDQLEELGHELDAPVVQGSTRNKEREILFDRFR-SGEISTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K K+ A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK----------KDGGQAHFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT + Y+ RQ+FL +QGY++++
Sbjct: 515 DTLDADYAAHRQRFLAEQGYAYRI 538
>gi|375139772|ref|YP_005000421.1| DNA/RNA helicase [Mycobacterium rhodesiae NBB3]
gi|359820393|gb|AEV73206.1| DNA/RNA helicase, superfamily II [Mycobacterium rhodesiae NBB3]
Length = 549
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMATDSFWEGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 240 ELINRTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ +K + ++ E+
Sbjct: 352 IEAQGWIAPAECIEVRVTMTDNERMLYAVAEPDERYKLCSTVH-SKIAVVKSIL---EKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+GD+ +V L L E +L P+I G+T ER + F+ ++ T+ +SKV +
Sbjct: 408 KGDQTLVIGAYLDQLDELGTELNAPVIQGSTKTAEREALFDEFRRG-EIPTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEANV +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 467 SIDLPEANVAVQVSGTFGSRQEEAQRLGRLLRPKAD-----GGG-----AIFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYII 538
>gi|324998370|ref|ZP_08119482.1| DNA/RNA helicase, superfamily II [Pseudonocardia sp. P1]
Length = 553
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 229/397 (57%), Gaps = 31/397 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A + + L L TN VS QW
Sbjct: 183 RDYQQQAVDGFWDGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVSGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY +V +R++ K +E +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVVT---RRTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK ++A W D
Sbjct: 293 GLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y + ++ + + K + ++ H
Sbjct: 352 IEAQGWIAPAECVEVRVTLTDAERMAYATADAEERYRTASTAH-TKLNVVQAVLDRH--- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G++ +V L L KL P+I G+T + ER ++ F+ +L+ + +SKV +
Sbjct: 408 KGEQTLVIGAYLEQLEALGEKLDAPVIQGSTRNKERERLFDLFRRG-ELDRLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA + +Q+S GSR++EAQRLGR+LR K A G++ A FYS+VS DT
Sbjct: 467 SIDLPEATIAVQVSGTFGSRQEEAQRLGRLLRPK-------ADGRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPP--PDSG 418
+ Y+ RQ+FL +QGY+++++ + L P PD+G
Sbjct: 517 VDTDYAAHRQRFLAEQGYAYRIVDADDLLGPALPDAG 553
>gi|333372011|ref|ZP_08463948.1| DNA repair helicase [Desmospora sp. 8437]
gi|332975087|gb|EGK11992.1| DNA repair helicase [Desmospora sp. 8437]
Length = 569
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 218/384 (56%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ++++ + G+ SG++VLPCGAGK+++G++ ++ ++ L L N SV QW
Sbjct: 197 RTYQKRAVESFYREGDATGGSGVLVLPCGAGKTVIGMAVMEKVGRATLILTPNTTSVRQW 256
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + + ++ +T +KE V V TY ++ R + + + R
Sbjct: 257 IRELLDKTCLTESEVGEYTGKAKE----VRPVTVATYQIIT-NRDREKAALHHMMLFGKR 311
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR + ++ +LGLTATL+RED R D+ LIGPK +E +W
Sbjct: 312 DWGLVIYDEVHLLPAPVFRATADI-QARRRLGLTATLIREDGREADVFSLIGPKKFEVSW 370
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
++ + G+IA C E+ M EY ++ K K + NP K L E
Sbjct: 371 REMEEEGWIAKAVCTEIRTGMDDRRRREY-EQAAPKNKYRIAAENPEKL---SILKEVLE 426
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ R +++V L L E A +L+ P+I G T+ ER K+ + F+ ++ + +SKV
Sbjct: 427 RHREGRVLVIGQYLSQLREAAAQLKAPLITGETAEGEREKLYERFRQGKE-RVLVVSKVA 485
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A+V +Q+S GSR++EAQRLGRILR K KEE A+FY++VS
Sbjct: 486 NFAVDLPDASVAVQLSGTFGSRQEEAQRLGRILRPK----------KEENEAYFYTIVSR 535
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT + Y+ RQ FL+++GY + V
Sbjct: 536 DTLDQEYARNRQLFLMERGYRYAV 559
>gi|453379441|dbj|GAC85763.1| putative ATP-dependent DNA helicase [Gordonia paraffinivorans NBRC
108238]
Length = 561
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 142/382 (37%), Positives = 223/382 (58%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELVARTSLTEEEIGEYSGERKE-IRP---VTIATYQVMT---RKSKGQYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y E +K + + K + ++ H+ Q
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAH-TKVNVVKAILDKHQHQ 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 411 QTLVIGAYIDQ---LEELGRELDCPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|336324883|ref|YP_004604849.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
gi|336100865|gb|AEI08685.1| ATP-dependent DNA helicase [Corynebacterium resistens DSM 45100]
Length = 552
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 143/387 (36%), Positives = 217/387 (56%), Gaps = 26/387 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 188 QLRDYQEMAADSFWEGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQW 244
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ ++++ K +E +R
Sbjct: 245 RDELIRRTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RKTKGEFKALEVFDSR 297
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 298 DWGLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 356
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV + + Y E S K + L +P K ++ H
Sbjct: 357 KDIEAQGWIAPADCTEVRVQLDDDERMAYAVAEQSDKYR-LAATSPKKNTVVRRILELHP 415
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++ L L E A K P+I G T +R K+ Q F+ ++ + +SKV
Sbjct: 416 DE---PTLIIGAYLDQLEEIAEKFDVPVIDGRTGTAKREKLYQQFRDG-EIKVLAVSKVA 471
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ S+D+P A+V IQIS GSR++EAQRLGRILR K GG AFFYS+V+
Sbjct: 472 NFSVDLPSASVAIQISGTFGSRQEEAQRLGRILRPKPN------GG----GAFFYSVVTR 521
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT + Y+ RQ+FL +QGY ++++ S
Sbjct: 522 DTLDADYAAHRQRFLAEQGYGYRIMDS 548
>gi|379734135|ref|YP_005327640.1| putative DNA helicase, superfamily II [Blastococcus saxobsidens
DD2]
gi|378781941|emb|CCG01595.1| Putative DNA helicase, superfamily II [Blastococcus saxobsidens
DD2]
Length = 561
Score = 230 bits (586), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 219/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A K + L L TN VS QW
Sbjct: 183 RDYQQEAVDGFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVSGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + + ++ ++W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---TRRKGEYRHLDLFDAQDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRLTADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV + E Y E ++ Y + + R E+
Sbjct: 352 IESQGYIAPAECVEVRVSLDDEERMTYAVAEPEER----YRIAATAQSKLPVIRRVLERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ +V L L E L P+I G+T++ ER ++ QAF+ ++ T+ +SKV +
Sbjct: 408 PEEQKLVIGAYLDQLEELGTALDAPVIQGSTTNKERERLFQAFRVG-EIKTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 467 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY++ ++ +
Sbjct: 517 LDSEYAAHRQRFLAEQGYAYTIVDA 541
>gi|407985074|ref|ZP_11165676.1| type III restriction enzyme, res subunit [Mycobacterium hassiacum
DSM 44199]
gi|407373345|gb|EKF22359.1| type III restriction enzyme, res subunit [Mycobacterium hassiacum
DSM 44199]
Length = 549
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 220/384 (57%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQRMAADSFWEGG---SGVVVLPCGAGKTLVGAAAMAKASATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ +R++ K +E +R
Sbjct: 238 KRELINRTSLTENEIGEYSGERKE----IRPVTIATYQVIT---RRTKGQYKHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ E
Sbjct: 350 KDIEAQGWIAPAECIEVRVTMTDNERMLYATAEPDERYKICSTVH-TKIPVVKSIL---E 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +G++ +V L L E +L P+I GAT + ER + AF+ +++T+ +SKV
Sbjct: 406 RHKGEQTLVIGAYLDQLEELGQELGAPVITGATKNAEREALFDAFRRG-EVSTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYII 538
>gi|256397207|ref|YP_003118771.1| helicase domain-containing protein [Catenulispora acidiphila DSM
44928]
gi|256363433|gb|ACU76930.1| helicase domain protein [Catenulispora acidiphila DSM 44928]
Length = 548
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 220/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ K ++ F +G SG+IVLPCGAGK++VG +A ++ + L L TN VSV QW
Sbjct: 181 RPYQ-KDAAEGFRHGG--SGVIVLPCGAGKTIVGAAAMAGVEATTLILVTNTVSVHQWRK 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ D++I ++ KE V + TY ++ ++++ +E R+W
Sbjct: 238 ELLKRTTLTDEEIGEYSGARKE----IRPVTIATYQVLT---RKTKGVYANLELFDARDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED ++ LIGPK ++A W D
Sbjct: 291 GLIVYDEVHLLPAPVFRFTADI-QSRRRLGLTATLVREDGLEGEVFSLIGPKRFDAPWKD 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + + K E L++ H
Sbjct: 350 IEAQGYIAPADCVEVRVTLTDHERLRYASSEPEEKYR-IASTTATKSTLVEALVKKHA-- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L + +L P++ G+T+ ER ++ + F+ ++ T+ +SKV +
Sbjct: 407 -GEPTLVIGQYLEQLDDLGARLNAPVLKGSTTVKERERLYEGFRTG-EIPTLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA+V IQ+S GSR++EAQRLGR+LR K A G+ A FY++VS DT
Sbjct: 465 SVDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---GARFYAVVSRDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 515 VDQEYAAHRQRFLAEQGYAYRI 536
>gi|338811579|ref|ZP_08623785.1| DEAD/DEAH box helicase-like protein [Acetonema longum DSM 6540]
gi|337276341|gb|EGO64772.1| DEAD/DEAH box helicase-like protein [Acetonema longum DSM 6540]
Length = 569
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 222/386 (57%), Gaps = 27/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQ ++++ NG A SG++VLPCGAGK+++G+ +++ + L L T+ +V QW
Sbjct: 204 RPYQNEAVNIFHANGLATGGSGVLVLPCGAGKTVIGLGVMAQVQTNTLILTTSTTAVRQW 263
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI--IEEIR 142
+ +++ D++ +++D K+ + VTTY M+ + R E+ +
Sbjct: 264 IRELLDKTSLTPDEVGEYSADRKD----VRPITVTTYQMITY---RPEKDGPFPHFQLFN 316
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R WG ++ DEVH +PA +F +V + ++ +LGLTATL+RED R TD+ LIGPK +
Sbjct: 317 SRPWGFIIYDEVHTLPAPVF-QVTAELQARRRLGLTATLIREDGRETDVFTLIGPKKVDI 375
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W +L + G+IA C+E+ PM+ + E + K L NP K + LI
Sbjct: 376 PWRELERDGWIAPTVCSELRVPMSLDLRLE-CAQSGDKIAYRLEAENPAKLAVVKDLIAN 434
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H+ G+ I+V + L A +L P+I G T+ +R ++ + F+ R + + +SK
Sbjct: 435 HQ---GESILVIGQYIKQLEILAAELNAPLITGKTASAKRDELYEDFRQGR-IPLLVVSK 490
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + +ID+P+A+V IQ+S GSR++EAQRLGRILR K A G+ A+FY++V
Sbjct: 491 VANFAIDLPDASVAIQVSGAFGSRQEEAQRLGRILRPK-------ADGR---GAYFYTVV 540
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
S D++E +S RQ FL +QGY + +
Sbjct: 541 SKDSREQEFSHHRQLFLTEQGYQYII 566
>gi|118466248|ref|YP_880250.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
104]
gi|254773876|ref|ZP_05215392.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
subsp. avium ATCC 25291]
gi|118167535|gb|ABK68432.1| DNA or RNA helicase of superfamily protein II [Mycobacterium avium
104]
Length = 549
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 219/384 (57%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQQMAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V ++TY M+ +R++ + +E +R
Sbjct: 238 KRELVTRTSLTEDEIGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 350 KDIEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYRLCSTVH-TKIAVVKSILDKHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++ +V L L E +L P+I G+T ER ++ AF+ ++NT+ +SKV
Sbjct: 409 ---GEQTLVIGAYLDQLDELGEQLGAPVIQGSTRTKEREELFDAFRRG-EVNTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+
Sbjct: 465 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GG----GAVFYSVVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYII 538
>gi|429220366|ref|YP_007182010.1| DNA/RNA helicase [Deinococcus peraridilitoris DSM 19664]
gi|429131229|gb|AFZ68244.1| DNA/RNA helicase, superfamily II [Deinococcus peraridilitoris DSM
19664]
Length = 568
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/385 (37%), Positives = 216/385 (56%), Gaps = 25/385 (6%)
Query: 27 RPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQE++ + +G + SG++VLP GAGK++VG+ A + + L L TN SV+QW
Sbjct: 187 RDYQEEAARAFYQSGSRQGGSGVVVLPPGAGKTVVGMVAMSLVGQRTLVLTTNRTSVNQW 246
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ D + + K R A V + TY M+ K S E + E R +
Sbjct: 247 RRELLDKTSLSPDDVAEY-GPGKHRL---APVTLATYQMLTARSKNSAEYPHM-ELFRAQ 301
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR + + ++ +LGLTATL+RED R D+ LIGPK Y+ W
Sbjct: 302 DWGLIVYDEVHLLPAPIFR-LTAEVQARRRLGLTATLIREDGREGDVFSLIGPKRYDLPW 360
Query: 205 LDLVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
DL G+IA +C EV + + E + L +E K + L NP K ++ H
Sbjct: 361 KDLEGRGWIATAECCEVRVRLPEHERLAYALAEEREKFR--LAAENPRKRDLTRAILALH 418
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
G +V L L A L P+I G T ER ++ AF+ R L+T+ LSKV
Sbjct: 419 A---GQPTLVIGQYLGQLELIAQDLEAPLITGQTPQRERERMFDAFREGR-LSTLVLSKV 474
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
G+ ++D+PEA V++Q+S GSR++EAQRLGR+LR K E +A FYSLV+
Sbjct: 475 GNFALDLPEAQVMVQVSGTFGSRQEEAQRLGRLLRPKRHGE----------SAQFYSLVT 524
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
+T+E ++ RQ FL +QGY++ V
Sbjct: 525 RETREEDFAHHRQLFLAEQGYAYHV 549
>gi|134097156|ref|YP_001102817.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|291005387|ref|ZP_06563360.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
gi|133909779|emb|CAL99891.1| ATP-dependent DNA helicase [Saccharopolyspora erythraea NRRL 2338]
Length = 553
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 226/397 (56%), Gaps = 31/397 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A + L L TN V+ QW
Sbjct: 183 RDYQRQAVQAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S+ K +E +R+W
Sbjct: 240 ELVERTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T + E L+ S+ + V + + +A + ++
Sbjct: 352 IESQGWIAPAECVEVRVTLTDD---ERLRYATSEAEDRYKVCSTARTKAP-VVKAILDRH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E L P++ G+T + ER + AF+ ++N + +SKV +
Sbjct: 408 PGEPALVIGAYLEQLHELGEALDAPIVEGSTKNKEREALFDAFRRG-EINRLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K E A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKA----------ERKQAHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS---LPP--PDSG 418
+ Y+ RQ+FL +QGY+++++ + L P PD G
Sbjct: 517 LDTDYAAHRQRFLAEQGYAYRIVDADDLLGPAIPDVG 553
>gi|334134816|ref|ZP_08508318.1| helicase C-terminal domain protein [Paenibacillus sp. HGF7]
gi|333607660|gb|EGL18972.1| helicase C-terminal domain protein [Paenibacillus sp. HGF7]
Length = 565
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 147/407 (36%), Positives = 227/407 (55%), Gaps = 28/407 (6%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSA 63
D + +L ELK + R YQ +++ G SG++VLPCGAGK+++G++A
Sbjct: 170 DMAGYHAGEELPAELK-GVELRDYQRQAVECFHPAGGSDGGSGVLVLPCGAGKTVIGIAA 228
Query: 64 ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123
++ + L L TN SV QW + +++ + ++ ++ D K V + TY +
Sbjct: 229 LTKLSCAALILTTNVTSVRQWIKEILGKTSLDESRVGEYSGDIKL----VRPVTIATYQI 284
Query: 124 VAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182
+ +R + E+ E+ N R+WGL++ DEVH++PA +FR + + +LGLTATLV
Sbjct: 285 LTH--RREKGGEQAHMELFNSRDWGLIIYDEVHLLPAPVFRATADIQATR-RLGLTATLV 341
Query: 183 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TKEFFSEYLKKENSKK 241
RED R D+ LIGPKL++ W L + G+IA V C EV M T E + Y + S+
Sbjct: 342 REDGREEDVFSLIGPKLFDMPWKRLEQEGWIARVTCTEVGVEMETGELQNYYEADKRSRF 401
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
+ A N KF A L+ H+ G+ I++ L L E A KL P+I G V+
Sbjct: 402 RIA--GENSRKFLALTRLLARHD---GEAILIIGQYLDQLKEVARKLTIPLITGEMPQVD 456
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R ++ +AF + + +SKV + ++D+P+A+V IQ+S GSR++EAQRLGRILR K
Sbjct: 457 RQRLYEAFNTGL-VRILAVSKVANFAVDLPDASVAIQLSGSYGSRQEEAQRLGRILRPK- 514
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
K AFFY+LVS T E Y+ KR+ FL++QGY +++
Sbjct: 515 ---------KGRNEAFFYTLVSRGTSEQEYALKRRIFLLEQGYEYRI 552
>gi|41406897|ref|NP_959733.1| hypothetical protein MAP0799c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|417747240|ref|ZP_12395714.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
gi|41395247|gb|AAS03116.1| hypothetical protein MAP_0799c [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|336461259|gb|EGO40134.1| DNA/RNA helicase, superfamily II [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 549
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 218/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQQMAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V ++TY M+ +R+ + +E +R
Sbjct: 238 KRELVARTSLTEDEIGEYSGERKE----IRPVTISTYQMIT---RRTRGEYRHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 350 KDIEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYRLCSTVH-TKIAVVKSILDKHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++ +V L L E +L P+I G+T ER ++ AF+ ++NT+ +SKV
Sbjct: 409 ---GEQTLVIGAYLDQLDELGEQLGAPVIQGSTRTKEREELFDAFRRG-EVNTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+
Sbjct: 465 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GG----GAVFYSVVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYII 538
>gi|386346047|ref|YP_006044296.1| type III restriction protein res subunit [Spirochaeta thermophila
DSM 6578]
gi|339411014|gb|AEJ60579.1| type III restriction protein res subunit [Spirochaeta thermophila
DSM 6578]
Length = 563
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 209/385 (54%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQE ++ G+ +G IV+PCGAGK++VG++ + S L L N + QW
Sbjct: 193 RPYQEAAVKAFTGDDGPGTGYGTIVMPCGAGKTVVGLALMAHYRTSTLILTPNVAAAHQW 252
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +DQI +T +SK+ V V TY+++ + ++E + R
Sbjct: 253 IDEILDKTTLTEDQIAEYTGESKD----IKPVTVATYHILTWRPDHTQEYYPHFDLFLAR 308
Query: 145 EWGLLLMDEVHVVPAHMFRKVISL-TKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA +FR L K C GLTATLVRED + L L+GPK Y+
Sbjct: 309 NWGLIIYDEVHLLPAPVFRITAELQAKRRC--GLTATLVREDGKERHLFALVGPKRYDIP 366
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W D+ G+IA C E+ P+ ++ Y+ + +KK + NP K R L+ H
Sbjct: 367 WKDVEAQGWIAEALCYEIRIPLPEDLRLAYIAADQ-RKKHTIASTNPLKDRVVAALLERH 425
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
++ L L A L P+I G T + ER ++ + FK R + + +S+V
Sbjct: 426 ADL---PTLIIGQYLNQLERIARTLGLPLITGRTPNRERERLYREFKEGR-ITRLVVSRV 481
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ SID+P+A V IQ+S GSR++EAQRLGRILR K ++A+FY++V+
Sbjct: 482 ANFSIDLPDAAVAIQVSGTFGSRQEEAQRLGRILRPK------------HHHAYFYTIVT 529
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
DT E ++ RQ+FL +QGY +++
Sbjct: 530 RDTLEEHFAANRQRFLTEQGYRYQM 554
>gi|440776231|ref|ZP_20955081.1| hypothetical protein D522_04953 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|436723722|gb|ELP47507.1| hypothetical protein D522_04953 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 542
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 218/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQQMAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V ++TY M+ +R+ + +E +R
Sbjct: 231 KRELVARTSLTEDEIGEYSGERKE----IRPVTISTYQMIP---RRTRGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYRLCSTVH-TKIAVVKSILDKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++ +V L L E +L P+I G+T ER ++ AF+ ++NT+ +SKV
Sbjct: 402 ---GEQTLVIGAYLDQLDELGEQLGAPVIQGSTRTKEREELFDAFRRG-EVNTLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GG----GAVFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|400975239|ref|ZP_10802470.1| DNA repair helicase [Salinibacterium sp. PAMC 21357]
Length = 548
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 215/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ ++ F +G SG++VLPCGAGK+LVG+ A + K + L L TN VS QW
Sbjct: 186 REYQQHAIDNFFHHG---SGVVVLPCGAGKTLVGLGAMAQSKTTTLILVTNTVSARQWRA 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++++ ++ +KE V + TY ++ K +++ + +W
Sbjct: 243 EILKRTTLTEEEVGEYSGQTKEIL----PVTIATYQILTAKRKGEYAHLSLLDAL---DW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 296 GLVIYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ C EV + + EY + ++ + L P K L++ HE
Sbjct: 355 IEAQGFISPASCYEVRVDLPENQRLEYAASADDERYR-LAATAPAKIEIVRALVKKHE-- 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++I+V L + + A KL P + GAT ER ++ Q F+ + +SKV +
Sbjct: 412 -GERILVIGQYLDQIDDLAEKLNAPKLTGATPVAERERLYQEFREGIT-KILVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA V IQ+S GSR++EAQRLGR+LR K + A FY+LV+ DT
Sbjct: 470 SVDLPEATVAIQVSGSFGSRQEEAQRLGRLLRPK----------ESGLPANFYTLVARDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGYS+ ++
Sbjct: 520 VDQDFAQNRQRFLAEQGYSYTIL 542
>gi|383821970|ref|ZP_09977203.1| DNA or RNA helicase of superfamily protein II [Mycobacterium phlei
RIVM601174]
gi|383332268|gb|EID10751.1| DNA or RNA helicase of superfamily protein II [Mycobacterium phlei
RIVM601174]
Length = 542
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 217/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQQMATDSFWEGG---SGVVVLPCGAGKTLVGAAAMAKASATTLILVTNTVAGRQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ +R++ K +E +R
Sbjct: 231 KRELINRTSLTENEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ Y + + E
Sbjct: 343 KDIEAQGWIAPAECIEVRVTMTDNERMLYATAEPDER----YKLCSTAHTKIAVVKSILE 398
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +G++ +V L L E +L P+I G+T + ER + F+ S +++T+ +SKV
Sbjct: 399 RHKGEQTLVIGAYLDQLEELGRELDAPVIQGSTKNSEREALFDRFR-SGEISTLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS
Sbjct: 458 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYVI 531
>gi|373252226|ref|ZP_09540344.1| helicase domain-containing protein [Nesterenkonia sp. F]
Length = 544
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 216/386 (55%), Gaps = 28/386 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG L L + VS QW
Sbjct: 178 RGYQQEAMDNFWAAG---SGVVVLPCGAGKTLVGAGVMAVSSTITLILVNSTVSARQWKD 234
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D I ++ D KE V + TY ++A KR E + E + +W
Sbjct: 235 ELLRRTSLTEDDIGEYSGDRKE----VRPVTIATYQVLAV--KRGELHPHL-ELLDQHDW 287
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR+ L ++ +LGLTATL+RED R ++ LIGPK Y+A W
Sbjct: 288 GLIIYDEVHLLPAPIFRRTADL-QARRRLGLTATLIREDGREREVFSLIGPKRYDAPWKQ 346
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C E+ + + EY + ++K L K L+ H
Sbjct: 347 MESQGWIAPADCTEIRVDLPRAVRMEYASAPD-REKHRLAAATEAKDDVVARLVARH-VH 404
Query: 267 RGDKIIV---FADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
RG++I+V F + L AL E +L P++ G+TS R ++ Q F+ +L+ + +SK+
Sbjct: 405 RGEQILVIGQFVEQLQALGE---RLDAPVLTGSTSTARRQRVFQQFREG-ELDVLVVSKI 460
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ S+D+P+A+V IQ+S GSR++EAQRLGR+LR E + A FYSLV+
Sbjct: 461 ANFSVDLPQASVAIQVSGTFGSRQEEAQRLGRLLRTDAADEGK--------RAHFYSLVA 512
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
DT +M Y+ KRQ+FL +QGY + ++
Sbjct: 513 RDTVDMDYAAKRQRFLSEQGYGYTIL 538
>gi|383791881|ref|YP_005476455.1| DNA/RNA helicase [Spirochaeta africana DSM 8902]
gi|383108415|gb|AFG38748.1| DNA/RNA helicase, superfamily II [Spirochaeta africana DSM 8902]
Length = 568
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 146/391 (37%), Positives = 218/391 (55%), Gaps = 28/391 (7%)
Query: 21 KPHAQPRPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78
+P A PR YQ ++ G+GR +G +VL CGAGK++VG+ A R++ S L L TN
Sbjct: 196 RPFA-PREYQVAAVESFVGDGRPGTGFGTVVLACGAGKTIVGMQAMYRLQTSTLILTTNI 254
Query: 79 VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE-KI 137
+V QW + + I + I +T + KE + V TY ++ + + ES+
Sbjct: 255 AAVHQWIRELVDKTDIPREDIGEYTGERKE----IKPITVATYQILVW--RPDVESDFPH 308
Query: 138 IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGP 197
+R WGL++ DEVH++PA MFR V + ++ ++GLTATLVRED R D+ L+GP
Sbjct: 309 FSLFSSRRWGLIIYDEVHLLPAPMFR-VTAEIQAVRRIGLTATLVREDGREGDVFSLVGP 367
Query: 198 KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257
K Y+ W +L + G+IA +C E+ P+ E Y + + K + NP K A
Sbjct: 368 KRYDVPWKELEERGWIAAAECHEIRLPLPAELKIPY-ATADKRAKFRIASENPLKIEATR 426
Query: 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNT 317
LI H Q D I+V + L + A +L P+I G+T + +R +I Q F+ +
Sbjct: 427 QLIAKHPQ---DAILVIGQYVAQLKKLAAELNAPLITGSTPNQQREEIYQQFRDG-EQRI 482
Query: 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377
I +SKV + +ID+P+A++ IQ+S GSR++EAQRLGRILR K DR N
Sbjct: 483 IVVSKVANFAIDLPDASMAIQVSGTFGSRQEEAQRLGRILRPK----DR--------NVL 530
Query: 378 FYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
F+SLVS T E +S RQ+FL +QGY + +
Sbjct: 531 FFSLVSRFTTEEQFSANRQKFLTEQGYKYHI 561
>gi|400537832|ref|ZP_10801354.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
colombiense CECT 3035]
gi|400328876|gb|EJO86387.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
colombiense CECT 3035]
Length = 542
Score = 229 bits (583), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 176 RDYQQMATDSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKR 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 233 ELIARTSLSEDEIGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 285
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 286 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 344
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 345 IEAQGWIAPAECVEVRVTMTDNERMLYATAEPEERYKLCSTVH-TKIAVVKSILAKHP-- 401
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER ++ AF+ +L+T+ +SKV +
Sbjct: 402 -GEQTLVIGAYLDQLDELGAELNAPVIQGSTRTKEREELFDAFRRG-ELSTLVVSKVANF 459
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+ D+
Sbjct: 460 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GG----GAIFYSVVARDS 509
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 510 LDAEYAAHRQRFLAEQGYGYII 531
>gi|257057395|ref|YP_003135227.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
gi|256587267|gb|ACU98400.1| DNA/RNA helicase, superfamily II [Saccharomonospora viridis DSM
43017]
Length = 548
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 220/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A + + + L L TN V+ QW
Sbjct: 183 RDYQRQAADAFWAGG---SGVVVLPCGAGKTLVGAAAMAQAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +RS+ K +E +R+W
Sbjct: 240 ELVERTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRSKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y +S+++ L K + ++ H
Sbjct: 352 IEAQGWIAPAECVEVRVTLTDAERLAY-ATADSEERYRLASTARTKNKVISSIVDKHA-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P++ G+T + ER + AF+ +++ + +SKV +
Sbjct: 409 -GEPTLVIGAYLDQLEELGAELDAPVVQGSTRNKEREALFDAFRRG-EIDKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K + G++ A FYS+V+ DT
Sbjct: 467 SIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPK-------SDGRQ---AHFYSVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYHIV 539
>gi|256825951|ref|YP_003149911.1| DNA/RNA helicase [Kytococcus sedentarius DSM 20547]
gi|256689344|gb|ACV07146.1| DNA/RNA helicase, superfamily II [Kytococcus sedentarius DSM 20547]
Length = 550
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 137/391 (35%), Positives = 214/391 (54%), Gaps = 26/391 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQE ++ G SG++VLPCGAGK+LVG A R + + L L TN +S QW
Sbjct: 181 RPYQEHAVDGFTDGG---SGVVVLPCGAGKTLVGAGAMARQETTTLILVTNTMSARQWKA 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ KE V + TY ++ R + ++ + R+W
Sbjct: 238 ELLRRTTLTEEEIGEYSGTVKE----VRPVTIATYQVLT---TRRKGVYTHLDLLDARDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGP+ Y A W D
Sbjct: 291 GLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGRENEVFSLIGPQRYNAPWKD 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + + Y E ++ Y + L R E
Sbjct: 350 IEAQGWIAPADCVEVRTTLPESERMAYATAEADQR----YRLAACADVKLPVLDRIVEHH 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E A +L +I G T ER ++ +AF+ S ++ + +SKV +
Sbjct: 406 AGEATLVIGQYLDQLEEIAGRLDCDIITGETPQKERGRLFEAFR-SGEITRLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR K + A FY++V+ DT
Sbjct: 465 SIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPK----------SDGRTAHFYTVVTRDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
+ ++ RQ+FL +QGY+++++ + PD+
Sbjct: 515 VDAEFAAHRQRFLAEQGYAYRILDAEEVPDA 545
>gi|329922713|ref|ZP_08278265.1| helicase C-terminal domain protein [Paenibacillus sp. HGF5]
gi|328942055|gb|EGG38338.1| helicase C-terminal domain protein [Paenibacillus sp. HGF5]
Length = 595
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/392 (33%), Positives = 219/392 (55%), Gaps = 22/392 (5%)
Query: 27 RPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
R YQ+K++ G +G++VLPCGAGK+++G++A ++ L L +N SV QW
Sbjct: 202 RDYQQKAVDSFRDIGGEGGNGVLVLPCGAGKTVIGIAAMRELQCETLILTSNTTSVRQWI 261
Query: 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE 145
+ +T+ D+I ++ K+ V V TY+++ + EE + + + R
Sbjct: 262 AELMQKTTLSVDEIGEYSGQRKQ----VRPVTVATYHILTHRQGKGEEQQHM-KLFNERR 316
Query: 146 WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL 205
WGL++ DEVH++PA +FR + + +LGLTATLVRED R +D+ LIGPK YE W
Sbjct: 317 WGLIIYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGRESDVFSLIGPKRYEMPWK 375
Query: 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
L G+IA+V C E+ P+ E E + +++ L NP+K L+ H+
Sbjct: 376 RLEAQGWIASVTCTEIKVPLPDE-IREACETAGKREQYRLAAENPSKLDVIRQLVDVHKD 434
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
+ I + D L A++ +L+ P+I G + +R + AF+ ++ + +SKV +
Sbjct: 435 AQTLIIGQYLDQLHAISR---ELQAPLITGQMTQDQRNEWYNAFREG-NVRVLVVSKVAN 490
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
++D+P+A+V I++S GSR++EAQRLGR+LR K E +FY+LV+ D
Sbjct: 491 FAVDLPDASVAIEVSGSYGSRQEEAQRLGRLLRPK----------TGENRGYFYALVTED 540
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
++E ++ +RQ FLI+QGY + I + P S
Sbjct: 541 SREEIFAIRRQLFLIEQGYEYHAIHAKQPTAS 572
>gi|227832581|ref|YP_002834288.1| helicase [Corynebacterium aurimucosum ATCC 700975]
gi|262182936|ref|ZP_06042357.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
gi|227453597|gb|ACP32350.1| putative helicase [Corynebacterium aurimucosum ATCC 700975]
Length = 545
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 221/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SGI+VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 184 RDYQQYAADSFWSGG---SGIVVLPCGAGKTIVGAAAMAKAQATTLILVTNTVAGRQWRD 240
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ ++I ++ + KE + + TY +V ++++ + +E + +W
Sbjct: 241 ELLRRTSLTPEEIGEYSGEKKE----IKPITIATYQVVT---RKTKGEYRALELFDSHDW 293
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W +
Sbjct: 294 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKE 352
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA C EV MT+E Y + ++++ + K RA + L++ HE
Sbjct: 353 LESAGYIATADCVEVRVDMTQEERLLYATAQ-ARERYRIAASASAKLRAVDKLLKKHE-- 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G + ++ + L E L P+I G TS +R K+ Q F+ +L T+ +SKV +
Sbjct: 410 -GQQALIIGAYVAQLEELGEHLDAPVIDGKTSTTKREKLFQQFREG-ELLTLVVSKVANF 467
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA + IQ+S GSR++EAQRLGR+LR K K+ A FY+LV+ ++
Sbjct: 468 SIDLPEAALAIQVSGTFGSRQEEAQRLGRLLRPK----------KDGQEATFYTLVARES 517
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 518 IDAEYAMHRQRFLAEQGYAYRLV 540
>gi|331699464|ref|YP_004335703.1| type III restriction protein res subunit [Pseudonocardia
dioxanivorans CB1190]
gi|326954153|gb|AEA27850.1| type III restriction protein res subunit [Pseudonocardia
dioxanivorans CB1190]
Length = 553
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 218/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A + K + L L TN VS QW
Sbjct: 183 RSYQQEAVDGFWQGG---SGVVVLPCGAGKTLVGAAAMAQAKATTLILVTNTVSGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 240 ELIARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y + ++ Y M + ++
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDAERLGYATADAEER----YRMASTARTKLPVVKAILDRH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ +V L L + L P+I G+T + ER + AF+ ++ + +SKV +
Sbjct: 408 PDEPTLVIGAYLDQLDDLGGALNCPVIQGSTKNKEREALFDAFRAG-EVKRLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEATVAIQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY+++++ +
Sbjct: 517 LDTDYAAHRQRFLAEQGYAYRIVDA 541
>gi|443288418|ref|ZP_21027512.1| Putative DNA repair helicase [Micromonospora lupini str. Lupac 08]
gi|385888559|emb|CCH15586.1| Putative DNA repair helicase [Micromonospora lupini str. Lupac 08]
Length = 559
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 189 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 245
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 246 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 298
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 299 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 357
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++++ + K + L+ H
Sbjct: 358 IESQGWIAPAECVEVRVTLTDAERMSYATAE-AEERYRMAATARTKLPVVKALVDRHPDD 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L + EY L P++ G+T++ ER ++ AF+ ++ T+ +SKVG+
Sbjct: 417 QVLVIGAYIDQLHQIGEY---LDAPIVQGSTTNKERERLFDAFRTG-EIRTLVISKVGNF 472
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 473 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 522
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 523 IDTEYAAHRQRFLAEQGYAYTIV 545
>gi|312138404|ref|YP_004005740.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
gi|311887743|emb|CBH47055.1| ATP-dependent DNA helicase [Rhodococcus equi 103S]
Length = 552
Score = 228 bits (582), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 218/386 (56%), Gaps = 26/386 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H Q R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+
Sbjct: 181 HWQLRDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGR 237
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +++ +++I ++ + KE V + TY ++ ++S+ K +E
Sbjct: 238 QWKRELIARTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEYKHLELFD 290
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 291 SRDWGLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 349
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV +T Y E ++ + L K + ++
Sbjct: 350 PWKDIEAQGWIAPADCVEVRVTLTDAERMAYATAEPEERYK-LCSTARTKHAVVKSILDR 408
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H G +V L L E +L P+I G+T + ER + F+ ++ T+ +SK
Sbjct: 409 HP---GAPTLVIGAYLDQLEELGAELDAPVIQGSTRNKEREALFDRFRAG-EIQTLVVSK 464
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V
Sbjct: 465 VANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVV 514
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
+ DT + Y+ RQ+FL +QGY++++
Sbjct: 515 ARDTLDAEYAAHRQRFLAEQGYAYRI 540
>gi|220911680|ref|YP_002486989.1| helicase [Arthrobacter chlorophenolicus A6]
gi|219858558|gb|ACL38900.1| helicase domain protein [Arthrobacter chlorophenolicus A6]
Length = 548
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 220/389 (56%), Gaps = 30/389 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ + + G SG++VLPCGAGK+LVG +A + L L TN V+ QW
Sbjct: 181 QLRPYQRLASENFWSGG---SGVVVLPCGAGKTLVGAAAMATGSTTTLILVTNTVAARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIR 142
+ +++ +++I ++ KE V + TY ++ GG +E +
Sbjct: 238 KDELLKRTSLTEEEIGEYSGALKE----VRPVTIATYQVLTTKRGGLYPH-----LELVD 288
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A
Sbjct: 289 GHDWGLIIYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGEVFSLIGPKRYDA 347
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV + K+ Y +++ K + L + +K E L+
Sbjct: 348 PWKDIESQGYIAPADCVEVRVDLPKDERVAYAMADDADKYR-LCSTSESKSVVVEQLVAR 406
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H G++++V + L + +L+ P+I G TS R ++ AF+ ++ T+ +SK
Sbjct: 407 HA---GEQLLVIGQYIDQLDDLGERLQAPVIKGDTSVKVRQRLFDAFRAG-EIQTLVVSK 462
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V IQ+S GSR++EAQRLGR+LR K K+ A FYSLV
Sbjct: 463 VANFSIDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK----------KDGRAARFYSLV 512
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVITS 411
+ DT + ++ KRQ+FL +QGY+++++ +
Sbjct: 513 ARDTLDQEFAAKRQRFLAEQGYAYRIMDA 541
>gi|374324719|ref|YP_005077848.1| DNA or RNA helicase of superfamily II [Paenibacillus terrae
HPL-003]
gi|357203728|gb|AET61625.1| DNA or RNA helicase of superfamily II [Paenibacillus terrae
HPL-003]
Length = 602
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/384 (34%), Positives = 219/384 (57%), Gaps = 24/384 (6%)
Query: 27 RPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
R YQ ++ G +G SG++VLPCGAGK+++G++ R++ L L +N SV QW
Sbjct: 216 RDYQMEAAYAFEGADGLGGSGVLVLPCGAGKTVIGMAVMERLQCEVLILTSNTTSVRQWI 275
Query: 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE-KIIEEIRNR 144
+ KL + I + I ++ KE + TY ++ +R+++ E + ++ + R
Sbjct: 276 EELKLKTDIPVESIGEYSGQKKE----VRPITAATYQILTH--RRTKDGEFEHMKLLSER 329
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR + + +LGLTATLVRED D+ LIGPK Y+ W
Sbjct: 330 KWGLIVYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDGCERDVFSLIGPKRYDMPW 388
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + G+IA V C E+ PM+ ++ E +++ + NP K A L+ +
Sbjct: 389 KELERQGWIAQVDCVELRLPMSAALLERSMRAEG-RQQYRIAAENPAKLEAVRSLM---Q 444
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q +G ++ L L A +L P+I G+ S ER + AF+ + + T+ +SKV
Sbjct: 445 QHKGLPTLIIGQYLDQLRILAQELSVPLITGSMSQAERVRWFDAFR-NGTIRTLLVSKVA 503
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A V I++S GSR++EAQRLGRILR K E A+FY+LV+
Sbjct: 504 NFAVDLPDAAVAIEVSGSFGSRQEEAQRLGRILRPKSG----------ENKAYFYALVTE 553
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
+++E ++ +RQ FLI+QGY + +
Sbjct: 554 NSKETDFAARRQLFLIEQGYEYAI 577
>gi|170783064|ref|YP_001711398.1| DNA repair helicase [Clavibacter michiganensis subsp. sepedonicus]
gi|169157634|emb|CAQ02832.1| putative DNA repair helicase [Clavibacter michiganensis subsp.
sepedonicus]
Length = 546
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 214/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ G SG++VLPCGAGK+LVG +A R K + L L TN VS QW
Sbjct: 183 RGYQNDAVDHFLDGG---SGVVVLPCGAGKTLVGAAAMARAKTTTLILVTNTVSARQWRS 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ S+E V + TY ++ K +++ + +W
Sbjct: 240 ELLKRTTLTEDEIGEYSGQSRE----VKPVTIATYQILTAKRKGEYAHLALLDAL---DW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 293 GLVVYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ +C EV + + Y + ++ + L P K L+ E+
Sbjct: 352 IEAQGFISPAECFEVRIDLPDDERLVYAAAADDERYR-LAATAPAKLDVTRALV---ERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG+ I+V L + E + L P + GAT ER ++ QAF+ + + +SKV +
Sbjct: 408 RGESILVIGQYLEQIDELSEALGAPKLTGATPVAERERLYQAFRDGTE-RVLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+P+A V IQ+S GSR++EAQRLGR+LR + A G +A FY+LVS DT
Sbjct: 467 SVDLPDATVAIQVSGSFGSRQEEAQRLGRLLRPE-------ASG---LSASFYTLVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGYS+ ++
Sbjct: 517 VDQDFAQNRQRFLAEQGYSYTIL 539
>gi|333989429|ref|YP_004522043.1| DNA helicase Ercc3 [Mycobacterium sp. JDM601]
gi|333485397|gb|AEF34789.1| DNA helicase Ercc3 [Mycobacterium sp. JDM601]
Length = 550
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 221/384 (57%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 182 QLRDYQEMAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQW 238
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ +R++ + +E +R
Sbjct: 239 KRELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSR 291
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 292 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 350
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT+ Y E ++ + ++ +K +++ H
Sbjct: 351 KDIEAQGWIAPAECIEVRVTMTESERMTYAIAEPEERYKLCSTVH-SKIAVVRSILKQHP 409
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++ +V L L E +L P+I G+T ER K+ AF+ +++T+ +SKV
Sbjct: 410 ---GEQTLVIGAYLDQLEELGEQLDAPVIQGSTRTAEREKLFDAFRKG-EVSTLVVSKVA 465
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+
Sbjct: 466 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVAR 515
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 516 DSLDAEYAAHRQRFLAEQGYGYII 539
>gi|284033810|ref|YP_003383741.1| helicase domain-containing protein [Kribbella flavida DSM 17836]
gi|283813103|gb|ADB34942.1| helicase domain protein [Kribbella flavida DSM 17836]
Length = 546
Score = 228 bits (582), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 216/385 (56%), Gaps = 30/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+++ + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 183 RPYQQQAADSFWHGG---SGVVVLPCGAGKTIVGAAAMAQASATTLILVTNTVSARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE V + TY ++ R + +E R+W
Sbjct: 240 ELLKRTTLTEDEIGEYSGARKE----IRPVTIATYQVMT---TRRKGVYAHLELFDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ ++GLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRMTADL-QTRRRIGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPM--TKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+ G+IA C EV + T+ F + E+ + L P K R + R E
Sbjct: 352 IEAQGWIAPADCVEVRVDLEQTERFVYATAEPEDRYR---LAASTPAKSR---LVRRIAE 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+G+ ++V + L E +L P+I G T+ ER ++ AF+ +++ + +SKV
Sbjct: 406 HHKGEPMLVIGQYIDQLDELGERLECPVIKGETTVKERQRLFNAFRTG-EIDRLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K + A FYS+V+
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRVLRPK----------NDGRTARFYSIVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ RQ+FL +QGY++ ++
Sbjct: 515 DTVDAEFAAHRQRFLAEQGYAYTIV 539
>gi|325674600|ref|ZP_08154287.1| DNA repair helicase [Rhodococcus equi ATCC 33707]
gi|325554186|gb|EGD23861.1| DNA repair helicase [Rhodococcus equi ATCC 33707]
Length = 552
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 141/386 (36%), Positives = 218/386 (56%), Gaps = 26/386 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H Q R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+
Sbjct: 181 HWQLRDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGR 237
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +++ +++I ++ + KE V + TY ++ ++S+ K +E
Sbjct: 238 QWKRELIARTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEYKHLELFD 290
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 291 SRDWGLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 349
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV +T Y E ++ + L K + ++
Sbjct: 350 PWKDIEAQGWIAPADCVEVRVTLTDAERMAYATAEPEERYK-LCSTARTKHAVVKSVLDR 408
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H G +V L L E +L P+I G+T + ER + F+ ++ T+ +SK
Sbjct: 409 HP---GAPTLVIGAYLDQLEELGAELDAPVIQGSTRNKEREALFDRFRAG-EIQTLVVSK 464
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V
Sbjct: 465 VANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVV 514
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
+ DT + Y+ RQ+FL +QGY++++
Sbjct: 515 ARDTLDAEYAAHRQRFLAEQGYAYRI 540
>gi|443304196|ref|ZP_21033984.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
H4Y]
gi|442765760|gb|ELR83754.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
H4Y]
Length = 542
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 176 RDYQQMATDSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKR 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 233 ELIARTSLTEDEIGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 285
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 286 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 344
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 345 IEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVH-TKIAVVKSILARHP-- 401
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER ++ F+ ++NT+ +SKV +
Sbjct: 402 -GEQTLVIGAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANF 459
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+ D+
Sbjct: 460 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVARDS 509
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 510 LDAEYAAHRQRFLAEQGYGYII 531
>gi|403721263|ref|ZP_10944374.1| putative ATP-dependent DNA helicase [Gordonia rhizosphera NBRC
16068]
gi|403207305|dbj|GAB88705.1| putative ATP-dependent DNA helicase [Gordonia rhizosphera NBRC
16068]
Length = 557
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 186 RDYQALAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAQATTLILVTNTVAGRQWKR 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 243 ELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 296 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y EN +K Y + + ++
Sbjct: 355 IEAQGWIAPAECIEVRVTLTDEERLQYAVAENDEK----YRLCSTAHTKVNVVRSILDRH 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ + ++ + L E +L P+I G+T + +R + F+ S +L T+ +SKV +
Sbjct: 411 KDSQTLIIGAYIDQLEELGRELDAPVIQGSTKNKDREALFDRFR-SGELQTLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 470 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKRD------GGQ----AHFYSVVSRDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 520 LDADYAAHRQRFLAEQGYAYRI 541
>gi|379745585|ref|YP_005336406.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
gi|379752870|ref|YP_005341542.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-02]
gi|379760310|ref|YP_005346707.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-64]
gi|406029195|ref|YP_006728086.1| DNA repair helicase RAD25 [Mycobacterium indicus pranii MTCC 9506]
gi|378797949|gb|AFC42085.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
gi|378803086|gb|AFC47221.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-02]
gi|378808252|gb|AFC52386.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare MOTT-64]
gi|405127742|gb|AFS12997.1| DNA repair helicase RAD25 [Mycobacterium indicus pranii MTCC 9506]
Length = 549
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQQMATDSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 240 ELIARTSLTEDEIGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 352 IEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVH-TKIAVVKSILAKHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER ++ F+ ++NT+ +SKV +
Sbjct: 409 -GEQTLVIGAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+ D+
Sbjct: 467 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVARDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYII 538
>gi|377569071|ref|ZP_09798246.1| putative ATP-dependent DNA helicase [Gordonia terrae NBRC 100016]
gi|377533978|dbj|GAB43411.1| putative ATP-dependent DNA helicase [Gordonia terrae NBRC 100016]
Length = 559
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 219/384 (57%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 184 QLRDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQW 240
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ ++S+ + ++ +R
Sbjct: 241 KRELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSR 293
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 294 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 352
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV +T E +Y E +K Y + + +
Sbjct: 353 KDIEAQGWIAPADCVEVRVTLTDEERLQYAVAEPEEK----YKLCSTAHTKVNVVKAILD 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ RG + ++ + L E +L P+I G+T + ER + F+ S +L T+ +SKV
Sbjct: 409 KHRGQQTLIIGAYIDQLEELGRELDSPVIQGSTKNKEREVLFDRFR-SGELQTLVVSKVA 467
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS
Sbjct: 468 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKRD------GGQ----AHFYSVVSR 517
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT + Y+ RQ+FL +QGY++++
Sbjct: 518 DTLDADYAAHRQRFLAEQGYAYRI 541
>gi|387874253|ref|YP_006304557.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
MOTT36Y]
gi|386787711|gb|AFJ33830.1| DNA or RNA helicase of superfamily protein II [Mycobacterium sp.
MOTT36Y]
Length = 542
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 176 RDYQQMATDSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKR 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 233 ELIARTSLTEDEIGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 285
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 286 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 344
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 345 IEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVH-TKIAVVKSILAKHP-- 401
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER ++ F+ ++NT+ +SKV +
Sbjct: 402 -GEQTLVIGAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANF 459
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+ D+
Sbjct: 460 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVARDS 509
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 510 LDAEYAAHRQRFLAEQGYGYII 531
>gi|254818296|ref|ZP_05223297.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
intracellulare ATCC 13950]
Length = 549
Score = 228 bits (581), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQQMATDSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 240 ELIARTSLTEDEIGEYSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 352 IEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYKLCSTVH-TKIAVVKSILAKHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER ++ F+ ++NT+ +SKV +
Sbjct: 409 -GEQTLVIGAYLDQLDELGAELGAPVIQGSTRTKEREELFDGFRRG-EVNTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K GG A FYS+V+ D+
Sbjct: 467 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAIFYSVVARDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYII 538
>gi|300790353|ref|YP_003770644.1| DNA excision repair protein [Amycolatopsis mediterranei U32]
gi|384153882|ref|YP_005536698.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|399542231|ref|YP_006554893.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|299799867|gb|ADJ50242.1| DNA excision repair protein [Amycolatopsis mediterranei U32]
gi|340532036|gb|AEK47241.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
gi|398323001|gb|AFO81948.1| DNA excision repair protein [Amycolatopsis mediterranei S699]
Length = 548
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 138/383 (36%), Positives = 215/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK+LVG +A R + + L L TN V+ QW
Sbjct: 183 RDYQRMAAEAFWAGG---SGVVVLPCGAGKTLVGAAAMARAQATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++++ + +E +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RKTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+ W D
Sbjct: 293 GLVVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDVPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T EY E ++ Y + + +
Sbjct: 352 IEAQGWIAPAECTEVRVTLTDAERLEYATAEADER----YKLAATALTKTPVIKSIVAKH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L +L P+I GAT + ER ++ F+ ++ T+ +SKV +
Sbjct: 408 AGEPTLVIGAYLDQLEMLGDELDAPVIQGATRNKEREELFDKFRRG-EIKTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQIS GSR++EAQRLGR+LR KG G++ A FYS+VS DT
Sbjct: 467 SIDLPEASVAIQISGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSIVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 517 VDTEYAAHRQRFLAEQGYAYHIV 539
>gi|443674395|ref|ZP_21139427.1| putative ATP-dependent DNA helicase [Rhodococcus sp. AW25M09]
gi|443413022|emb|CCQ17766.1| putative ATP-dependent DNA helicase [Rhodococcus sp. AW25M09]
Length = 551
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 143/382 (37%), Positives = 219/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A R K + L L TN V+ QW
Sbjct: 185 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMARAKATTLILVTNTVAGRQWKR 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ +R++ K +E +R+W
Sbjct: 242 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + L K + ++ H+
Sbjct: 354 IEAQGWIAPAECIEVRVTLTDAERMSYAVAEPEERYK-LCSTAHTKIAVVKSILAKHQ-- 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V L L E L P+I G+T + ER + AF+ ++ T+ +SKV +
Sbjct: 411 -GAPTLVIGAYLDQLNELGEALNAPVIQGSTKNKEREVLFDAFRKG-EIQTLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 469 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 519 LDAEYAAHRQRFLAEQGYAYRI 540
>gi|404213708|ref|YP_006667902.1| DNA or RNA helicases of superfamily II [Gordonia sp. KTR9]
gi|403644507|gb|AFR47747.1| DNA or RNA helicases of superfamily II [Gordonia sp. KTR9]
Length = 556
Score = 228 bits (580), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 219/384 (57%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +++I ++ + KE V + TY ++ ++S+ + ++ +R
Sbjct: 238 KRELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV +T E +Y E +K Y + + +
Sbjct: 350 KDIEAQGWIAPADCVEVRVTLTDEERLQYAVAEPEEK----YKLCSTAHTKVNVVKAILD 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +G + ++ + L E +L P+I G+T + ER + F+ S +L T+ +SKV
Sbjct: 406 KHQGQQTLIIGAYIDQLEELGRELDSPVIQGSTKNKEREVLFDRFR-SGELQTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKRD------GGQ----AHFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
DT + Y+ RQ+FL +QGY++++
Sbjct: 515 DTLDADYAAHRQRFLAEQGYAYRI 538
>gi|159039860|ref|YP_001539113.1| helicase domain-containing protein [Salinispora arenicola CNS-205]
gi|157918695|gb|ABW00123.1| helicase domain protein [Salinispora arenicola CNS-205]
Length = 559
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 139/383 (36%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 189 RSYQREAVEAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 245
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ + +I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 246 ELVARTSLTEAEIGEYSGERKE----IRPVTIATYQVLT---SRRGGAFTHLDLFGARDW 298
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 299 GLVVYDEVHLLPAPIFRFTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 357
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ + G+IA +C EV +T Y E ++ + + K + L+ H +
Sbjct: 358 IEQQGWIAPAECTEVRVTLTDAERMAYATAEADERYR-MAATTRTKLPVVKALLDRHPGE 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L EY L P++ G+T++ ER ++ AF+ S +L T+ +SKVG+
Sbjct: 417 QTLVIGGYIDQLHQLGEY---LDAPIVQGSTTNRERERLFDAFR-SGELQTLVISKVGNF 472
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K++ R A FY++VS DT
Sbjct: 473 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRVLRP--KIDGR--------QAHFYTVVSRDT 522
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 523 IDTEYAAHRQRFLAEQGYAYTIV 545
>gi|111226036|ref|YP_716830.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
gi|111153568|emb|CAJ65326.1| ATP-dependent DNA helicase [Frankia alni ACN14a]
Length = 573
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 139/391 (35%), Positives = 224/391 (57%), Gaps = 26/391 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A + + L L TN V+ QW
Sbjct: 178 REYQKGAVAGFWEGG---SGVVVLPSGAGKTIVGAAAMAQAGATTLILVTNTVAGRQWRH 234
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 235 ELLRRTSLTEDEIGEYSGERKE----IRPVTIATYQVMT---ARRKGEYLHLDLFGARDW 287
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 288 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRE 346
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA QC EV +T++ Y E ++ + + +K E L+R H
Sbjct: 347 IEAQGWIAPAQCTEVRVTLTEDERMTYAVAEPEERYRMCATAH-SKRAVVERLVRRHSD- 404
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
D+++V L L E L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 405 --DRVLVIGAYLDQLDELGELLGAPVIQGSTRNRERERLFEAFRTG-EITTLVVSKVANV 461
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G+ A FY++V+ DT
Sbjct: 462 SIDLPEAGVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---AAHFYTVVARDT 511
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
+ Y+ RQ+FL +QGY++ ++ + PDS
Sbjct: 512 LDQEYAAHRQRFLAEQGYAYTIVDADDIPDS 542
>gi|403378912|ref|ZP_10920969.1| putative ATP-dependent helicase [Paenibacillus sp. JC66]
Length = 566
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 220/386 (56%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMF--GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQE+++ + G+ SG+++LPCGAGK+++G+ A CR++ + L L N SV QW
Sbjct: 191 RPYQEQAVEAFYREGSRHGGSGVLILPCGAGKTVIGIGAMCRLQCATLILTPNVSSVKQW 250
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE-KIIEEIRN 143
+ + + ++ I + D KE V + TY ++ ++S+++ K +
Sbjct: 251 KRELLNITDLPEEWIGEYDGDRKE----VRPVTIATYQILTH--RKSKDAPFKHMHLFNK 304
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R+WGL++ DEVH++PA +FR V + ++ +LGLTATLVRED ++ LIGPK +
Sbjct: 305 RDWGLIIYDEVHLLPAPIFR-VTAEIQATRRLGLTATLVREDGCEKEVYSLIGPKRIDVP 363
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W L G++A V+C EV + E EY ++ +++ K N KF + L++ H
Sbjct: 364 WKSLEGDGYLATVECREVHVALDPEAKQEY-ERLSARHKTRAAAENKRKFAVVQALLQKH 422
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
G ++ L L + A P I G H ER ++ + F+ R +N + +SKV
Sbjct: 423 A---GMPTLLIGQYLDQLRQLAELTGAPFISGQMPHEEREELYKQFREGR-VNPLVVSKV 478
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ +ID+P+A V IQIS GSR++EAQRLGRILR K AG E A FYS+VS
Sbjct: 479 ANFAIDLPDAAVAIQISGSFGSRQEEAQRLGRILRPK-------AGANE---AIFYSIVS 528
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
+T+E ++ RQ FL++QGY ++++
Sbjct: 529 ANTKEQEFALNRQLFLVEQGYKYQLL 554
>gi|183221905|ref|YP_001839901.1| putative DNA repair helicase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
gi|189911974|ref|YP_001963529.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167776650|gb|ABZ94951.1| DNA or RNA helicase of superfamily II [Leptospira biflexa serovar
Patoc strain 'Patoc 1 (Ames)']
gi|167780327|gb|ABZ98625.1| Putative DNA repair helicase [Leptospira biflexa serovar Patoc
strain 'Patoc 1 (Paris)']
Length = 565
Score = 227 bits (579), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/386 (35%), Positives = 207/386 (53%), Gaps = 23/386 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ S+ GR SG++VLPCGAGK++VG+ + L L TN +S+ QW
Sbjct: 186 RDYQRASVEAFHAGGRNEGGSGVVVLPCGAGKTIVGMGVMQIVGAETLILVTNTLSIRQW 245
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I + I ++ + KE + + TYN++ K+ +
Sbjct: 246 RNEILDKTDIPESDIGEYSGEMKEI----KPITIATYNILTHRKKKGGDFTHF-HIFSAN 300
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+ W
Sbjct: 301 NWGLIVYDEVHLLPAPVFRMTSEL-QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPW 359
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L +IA C E+ PM + +Y + ++K L NP K RA ++++ H
Sbjct: 360 KELEAKSWIAEANCVEIRVPMEDDLRMKY-SVADDREKFRLASENPEKLRAISYILKKHS 418
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ I+V + L E + + P+I G T ER ++ QAF+ + + + +SKV
Sbjct: 419 T---NNILVIGQYINQLEEISNTFKIPLITGKTPLPERQELYQAFRTGQ-IKQLVVSKVA 474
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P+AN+ IQ+S GSR++EAQRLGRILR K ++ A FYSL+S
Sbjct: 475 NFSIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKA----------QDNTAIFYSLISR 524
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
DT E + RQ FL +QGY +++ T
Sbjct: 525 DTNEERFGQNRQLFLTEQGYEYEIYT 550
>gi|118468039|ref|YP_889939.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
smegmatis str. MC2 155]
gi|118169326|gb|ABK70222.1| DNA or RNA helicase of superfamily protein II [Mycobacterium
smegmatis str. MC2 155]
Length = 585
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 219 RDYQEMAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKR 275
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 276 ELVARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 328
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 329 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 387
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K ++ H +
Sbjct: 388 IEAQGWIAPAECIEVRVTMTDNERMLYATSEPDERYKLCSTVH-TKIAVVRSILERHPNE 446
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E +L P+I G+T + ER + AF+ ++ T+ +SKV +
Sbjct: 447 ---PTLVIGAYLDQLEELGQELDAPVIQGSTKNAEREALFDAFRRG-EIRTLVVSKVANF 502
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 503 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSRDS 552
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 553 LDAEYAAHRQRFLAEQGYGYII 574
>gi|359413327|ref|ZP_09205792.1| type III restriction protein res subunit [Clostridium sp. DL-VIII]
gi|357172211|gb|EHJ00386.1| type III restriction protein res subunit [Clostridium sp. DL-VIII]
Length = 556
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 221/387 (57%), Gaps = 25/387 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+++ + G A+ SG+IVLPCGAGK++ ++ +IK+ L L TN +V QW
Sbjct: 190 RDYQKEASDIFYSKGTAKGGSGVIVLPCGAGKTVTAMAVMDKIKEETLILTTNITAVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RN 143
+ I +D I ++ + KE + ++TY ++ ++S+ E I I
Sbjct: 250 KQELIDKMNINEDDIGEYSGEIKEI----KPITISTYQILTH--RKSKIDEFIHMNIFHE 303
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
+WG ++ DEVH +PA +FR V + ++ +LGLTATLVRED + D+ LIGPK Y+
Sbjct: 304 NKWGFIIYDEVHTLPAPVFR-VAAEIQATRRLGLTATLVREDGKEDDVFSLIGPKKYDLP 362
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W L K G+IA QC E+ + KE EY +SK K + N K LI H
Sbjct: 363 WKVLEKQGWIAEAQCTEIRVEIPKELKMEY-AVSDSKNKFRIASENYKKIDILRDLINEH 421
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
++ DKI++ + L + +L+ P+I G T +VER ++ FK +++ + +SKV
Sbjct: 422 KE---DKILIIGQYIDQLNLISKELKAPIITGKTKNVERIQLYDKFKKG-EISILIVSKV 477
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K K + A+FYS+V+
Sbjct: 478 ANFAIDLPDASVAIQVSGTFGSRQEEAQRLGRILRPK----------KGDNRAYFYSIVT 527
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVIT 410
D++E ++ KRQ FL +QGY + + T
Sbjct: 528 ADSREQEFAVKRQLFLAEQGYKYYIET 554
>gi|284989384|ref|YP_003407938.1| type III restriction protein res subunit [Geodermatophilus obscurus
DSM 43160]
gi|284062629|gb|ADB73567.1| type III restriction protein res subunit [Geodermatophilus obscurus
DSM 43160]
Length = 561
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 218/385 (56%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ + G SG++VLPCGAGK+LVG +A K + L L TN V+ QW
Sbjct: 183 RDYQQEAVEGFWAGG---SGVVVLPCGAGKTLVGAAAMAEAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + + ++ ++W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---TRRKGEYRHLDLFDAQDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRLTADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV + E Y E ++ Y + + R ++
Sbjct: 352 IEAQGYIAPAECIEVRVSLDDEERMTYAVAEPEER----YRIAATATSKLPVIRRVLDRH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ +V L L E L P+I G+T++ ER K+ AF+ ++ T+ +SKV +
Sbjct: 408 PDEQKLVIGAYLDQLDELGRALDAPVIQGSTTNREREKLFDAFRAG-EVKTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G++ A FY++VS DT
Sbjct: 467 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGRQ---AHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY++ ++ +
Sbjct: 517 LDAEYAAHRQRFLAEQGYAYTIVDA 541
>gi|374815582|ref|ZP_09719319.1| DNA or RNA helicase of superfamily II [Treponema primitia ZAS-1]
Length = 579
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 210/384 (54%), Gaps = 25/384 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + GN SG ++VLPCG+GK++VG++ +K + L L TN +V QW
Sbjct: 200 RDYQSEAARSVLGNNGPGSGYGVVVLPCGSGKTMVGMALMSLLKTNTLVLTTNVAAVHQW 259
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + ++ D+I +T DSK A V + TY ++ + + E + R R
Sbjct: 260 IDELLDKTDLEADEIAEYTGDSKR----VAPVTIATYQIITWRPDKEAEFPH-FKLFRER 314
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATL+RED + L+GPK Y+ W
Sbjct: 315 PWGLIIYDEVHLLPAPVFRVTAEL-QAVRRLGLTATLIREDGAEDAVFSLVGPKRYDVPW 373
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C E+ M ++ Y ++K + NP K L+ H
Sbjct: 374 KDLESKGWIAEALCTEIRLDMPEKLKIPY-AVATPREKYRVASENPYKESIVRQLMDNHP 432
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ D I+V + L A L+ P+I G T + ER K+ AFK + I +SKV
Sbjct: 433 E---DHILVIGQYITQLEGLARLLKVPLITGKTPNAEREKVYGAFKRG-EFRVIVVSKVA 488
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A++ IQ+S GSR++EAQRLGRILR KG+ N++FY+LVS
Sbjct: 489 NFAIDLPDASMAIQVSGSFGSRQEEAQRLGRILRPKGR------------NSYFYTLVSR 536
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ+FL +QGY + +
Sbjct: 537 YTVEEDFAANRQKFLAEQGYKYAI 560
>gi|399989940|ref|YP_006570290.1| type III restriction enzyme, res subunit [Mycobacterium smegmatis
str. MC2 155]
gi|441215685|ref|ZP_20976615.1| DNA helicase Ercc3 [Mycobacterium smegmatis MKD8]
gi|399234502|gb|AFP41995.1| Type III restriction enzyme, res subunit [Mycobacterium smegmatis
str. MC2 155]
gi|440624767|gb|ELQ86626.1| DNA helicase Ercc3 [Mycobacterium smegmatis MKD8]
Length = 549
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 240 ELVARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K ++ H +
Sbjct: 352 IEAQGWIAPAECIEVRVTMTDNERMLYATSEPDERYKLCSTVH-TKIAVVRSILERHPNE 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E +L P+I G+T + ER + AF+ ++ T+ +SKV +
Sbjct: 411 ---PTLVIGAYLDQLEELGQELDAPVIQGSTKNAEREALFDAFRRG-EIRTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYII 538
>gi|453074363|ref|ZP_21977157.1| DNA repair helicase [Rhodococcus triatomae BKS 15-14]
gi|452764769|gb|EME23035.1| DNA repair helicase [Rhodococcus triatomae BKS 15-14]
Length = 559
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 220/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 192 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 248
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE R V + TY ++ ++++ K +E +R+W
Sbjct: 249 ELIARTSLTEDEIGEYSGEKKE-IR---PVTIATYQVIT---RKTKGEYKHLELFDSRDW 301
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 302 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 360
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + L K + ++ H+
Sbjct: 361 IEAQGWIAPAECIEVRVTLTDAERMAYATAEPEERYK-LCSTARTKNAVVKSILAKHDDS 419
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L E L P+I G+T ER ++ AF+ ++ T+ +SKV +
Sbjct: 420 QTLVIGAYIDQLDELGE---ALDAPVIKGSTKTKEREQLFDAFRAG-EIKTLVVSKVANF 475
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 476 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 525
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 526 LDSEYAAHRQRFLAEQGYAYRI 547
>gi|54022596|ref|YP_116838.1| DNA helicase [Nocardia farcinica IFM 10152]
gi|54014104|dbj|BAD55474.1| putative DNA helicase [Nocardia farcinica IFM 10152]
Length = 552
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/386 (36%), Positives = 217/386 (56%), Gaps = 26/386 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+
Sbjct: 181 HWKLRDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGR 237
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +++ +D+I ++ + KE V + TY ++ +R++ K +E
Sbjct: 238 QWRRELLARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFD 290
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 291 SRDWGLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 349
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA +C EV +T Y E ++ + L K E ++
Sbjct: 350 PWKDIEAQGWIAPAECIEVRVTLTDAERMAYATAEPEERYK-LCSTARTKIPVVESILAK 408
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H +V L + E L P+I G+T + ER + AF+ ++ + +SK
Sbjct: 409 HPDA---PTLVIGAYLEQIEELGAALDAPVIQGSTKNKEREALFDAFRRG-EIPVLVVSK 464
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V
Sbjct: 465 VANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVV 514
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
+ DT + Y+ RQ+FL +QGY++++
Sbjct: 515 ARDTLDAEYAAHRQRFLAEQGYAYRI 540
>gi|108801448|ref|YP_641645.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS]
gi|119870601|ref|YP_940553.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS]
gi|126437433|ref|YP_001073124.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
gi|108771867|gb|ABG10589.1| type III restriction enzyme, res subunit [Mycobacterium sp. MCS]
gi|119696690|gb|ABL93763.1| type III restriction enzyme, res subunit [Mycobacterium sp. KMS]
gi|126237233|gb|ABO00634.1| type III restriction enzyme, res subunit [Mycobacterium sp. JLS]
Length = 549
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 216/384 (56%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQEMAADSFWSGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V + TY ++ +R++ + +E +R
Sbjct: 238 KRELVARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ Y + + E
Sbjct: 350 KDIEAQGWIAPAECIEVRVTMTDNERMLYAVAEPEER----YKLCSTVHTKIAVVRSILE 405
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +G++ +V L L E +L P+I G+T + ER + F+ +++T+ +SKV
Sbjct: 406 RHKGEQTLVIGAYLDQLEELGQELDAPVIQGSTKNAERELLFDQFRRG-EISTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GG----GAVFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYVI 538
>gi|339011047|ref|ZP_08643615.1| putative ATP-dependent helicase [Brevibacillus laterosporus LMG
15441]
gi|338772035|gb|EGP31570.1| putative ATP-dependent helicase [Brevibacillus laterosporus LMG
15441]
Length = 563
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 145/393 (36%), Positives = 219/393 (55%), Gaps = 24/393 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + NG A SG++ LPCGAGK+++G+ R + + L L T+ SV QW
Sbjct: 190 RDYQLAAVDAFYANGTAYGGSGVLCLPCGAGKTIIGIGTMSRFETATLILTTSTTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ D + +T + KE V VTTY MV + SEE + +
Sbjct: 250 INEIITKTTLTADMVGEYTGEQKE----VRPVTVTTYQMVTSRQRGSEEFPHM-NLFTDY 304
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +F K+ S ++ +LGLTATLVRED + ++ LIGPK YE W
Sbjct: 305 NWGLIIYDEVHMLPAPIF-KMTSSIQAKRRLGLTATLVREDGKEDEVFSLIGPKKYEMPW 363
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
L G+IA C EV P+ + E +++K L NP K + L+R
Sbjct: 364 KALEAQGWIATAFCKEVRLPLPS-IYREAYAFSGTREKYRLAAENPIKVNWVQKLLR--- 419
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q + D I++ + L A L P+I G T +R + + FK ++ + +SKV
Sbjct: 420 QHKDDHILIIGQYIKQLELVANTLGLPLITGKTPEEDRGRYYEMFKRG-EIKQLVISKVA 478
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+ANV IQIS GSR++EAQRLGRILR K + A+FY+LVS
Sbjct: 479 NFAVDLPDANVAIQISGTFGSRQEEAQRLGRILRPKATNQ-----------AYFYTLVSR 527
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDS 417
DT+E +++KRQ FL++QGY +++I S P++
Sbjct: 528 DTREQEFASKRQMFLLEQGYHYQIIESDEEPEN 560
>gi|404260342|ref|ZP_10963634.1| putative ATP-dependent DNA helicase [Gordonia namibiensis NBRC
108229]
gi|403401180|dbj|GAC02044.1| putative ATP-dependent DNA helicase [Gordonia namibiensis NBRC
108229]
Length = 556
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 221/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 240 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y E +K + + K + ++ H
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAH-TKVNVVKAILNKH--- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G + +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 408 KGQQTLVIGAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|307718024|ref|YP_003873556.1| DNA-helicase [Spirochaeta thermophila DSM 6192]
gi|306531749|gb|ADN01283.1| putative DNA-helicase [Spirochaeta thermophila DSM 6192]
Length = 588
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/385 (34%), Positives = 210/385 (54%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQE ++ G+ +G IV+PCGAGK++VG++ + S L L N + QW
Sbjct: 218 RPYQEAAVKAFTGDDGPGTGYGTIVMPCGAGKTVVGLALMAHYRTSTLILTPNVAAAHQW 277
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +DQI +T +SK+ V V TY+++ + +++E + R
Sbjct: 278 IDEILDKTTLTEDQIAEYTGESKD----IKPVTVATYHILTWRPDQTQEHYPHFDLFLAR 333
Query: 145 EWGLLLMDEVHVVPAHMFRKVISL-TKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA +FR L K C GLTATLVRED + L L+GPK ++
Sbjct: 334 NWGLIIYDEVHLLPAPVFRITAELQAKRRC--GLTATLVREDGKERHLFALVGPKRHDIP 391
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W ++ G+IA C E+ P+ ++ Y+ + +KK + NP K R L+ H
Sbjct: 392 WKEVEAQGWIAEALCYEIRIPLPEDLRLAYIAADQ-RKKHTIASTNPLKDRVVAVLLERH 450
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
++ L L A L P+I G T + ER ++ + FK R + + +S+V
Sbjct: 451 PDL---PTLIIGQYLDQLERIARTLGLPLITGRTPNRERERLYREFKEGR-ITRLVVSRV 506
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ SID+P+A V IQ+S GSR++EAQRLGRILR K ++A+FY++V+
Sbjct: 507 ANFSIDLPDAAVAIQVSGTFGSRQEEAQRLGRILRPK------------HHHAYFYTIVT 554
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
DT E ++ RQ+FL +QGY +++
Sbjct: 555 RDTLEEHFAANRQRFLTEQGYRYQM 579
>gi|408793028|ref|ZP_11204638.1| type III restriction enzyme, res subunit [Leptospira meyeri serovar
Hardjo str. Went 5]
gi|408464438|gb|EKJ88163.1| type III restriction enzyme, res subunit [Leptospira meyeri serovar
Hardjo str. Went 5]
Length = 565
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/386 (35%), Positives = 207/386 (53%), Gaps = 23/386 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ S+ GR SG++VLPCGAGK++VG+ + L L TN +S+ QW
Sbjct: 186 RDYQRASVEAFHAGGRNEGGSGVVVLPCGAGKTIVGMGVMQIVGAETLILVTNTLSIRQW 245
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I + I ++ + KE + + TYN++ K+ +
Sbjct: 246 RNEILDKTDIPESDIGEYSGELKEI----KPITIATYNILTHRKKKGGDFTHF-HIFSAN 300
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+ W
Sbjct: 301 NWGLIVYDEVHLLPAPVFRMTSEL-QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPW 359
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L +IA C E+ PM + +Y + ++K L NP K RA ++++ H
Sbjct: 360 KELEAKSWIAEANCVEIRVPMEDDLRMKY-SVADDREKFRLASENPEKLRAISYILKKHS 418
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ I+V + L E + + P+I G T ER ++ QAF+ S + + +SKV
Sbjct: 419 T---NNILVIGQYINQLEEISNTFKIPLITGKTPLPERQELYQAFR-SGQIKQLVVSKVA 474
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P+AN+ IQ+S GSR++EAQRLGRILR K ++ A FYSL+S
Sbjct: 475 NFSIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKS----------QDNTAIFYSLISR 524
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
DT E + RQ FL +QGY +++ T
Sbjct: 525 DTNEERFGQNRQLFLTEQGYEYEIYT 550
>gi|343928179|ref|ZP_08767634.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC
16433]
gi|343761877|dbj|GAA14560.1| putative ATP-dependent DNA helicase [Gordonia alkanivorans NBRC
16433]
Length = 559
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 141/382 (36%), Positives = 221/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 186 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 243 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 296 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y E +K + L K + ++ H
Sbjct: 355 IEAQGWIAPAECIEVRVTLTDEERLQYAVAEPEEKYK-LCSTAHTKVNVVKAILNKH--- 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G + +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 411 KGQQTLVIGAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 470 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 520 LDADYAAHRQRFLAEQGYAYRI 541
>gi|409389806|ref|ZP_11241607.1| putative ATP-dependent DNA helicase [Gordonia rubripertincta NBRC
101908]
gi|403200066|dbj|GAB84841.1| putative ATP-dependent DNA helicase [Gordonia rubripertincta NBRC
101908]
Length = 556
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 221/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 240 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y E +K + + K + ++ H+
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAH-TKVNVVKAILNKHQ-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G + +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 409 -GQQTLVIGAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|315646161|ref|ZP_07899281.1| type III restriction protein res subunit [Paenibacillus vortex
V453]
gi|315278360|gb|EFU41676.1| type III restriction protein res subunit [Paenibacillus vortex
V453]
Length = 576
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/400 (33%), Positives = 223/400 (55%), Gaps = 22/400 (5%)
Query: 8 RNDNVNPDLNMELKPHAQPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACR 66
R++ + +L E + R YQ+K++ G +G++VLPCGAGK+++G++A
Sbjct: 187 RSEESSGELPEEADQEFKLREYQQKAVESFRDIGGEGGNGVLVLPCGAGKTVIGMAAMRE 246
Query: 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126
++ L L +N SV QW + +++ D I ++ K+ V V TY ++
Sbjct: 247 LQCETLILTSNTTSVRQWITELLHKTSLSVDDIGEYSGQRKD----VRPVTVATYQILTH 302
Query: 127 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186
+ +E + + R WGL++ DEVH++PA +FR + + +LGLTATLVRED
Sbjct: 303 RQGKDDEQPHM-KLFNERRWGLIIYDEVHLLPAPVFRATADIQATR-RLGLTATLVREDG 360
Query: 187 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246
R D+ LIGPK YE W L + G+IA+V C E+ PM +E E +++ L
Sbjct: 361 REHDVFSLIGPKRYEMPWKRLEEQGWIASVDCVEMKVPMPEE-LKEACGAAGKREQYRLA 419
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
NP+K + L+ H +G +I+V L L A +L P+I G + +R +
Sbjct: 420 AENPSKLLVVKQLVDLH---KGAQILVIGQYLDQLNTIARQLDAPLITGQMAQDQRNEWY 476
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
+AF+ + + +SKV + ++D+P+A+V I++S GSR++EAQRLGR+LR K
Sbjct: 477 KAFR-EGAVRVLVVSKVANFAVDLPDASVAIEVSGSYGSRQEEAQRLGRLLRPK------ 529
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSF 406
+ E A+FY++VS D++E ++ +RQ FLI+QGY++
Sbjct: 530 ----QGENRAYFYAVVSEDSREEMFAIRRQLFLIEQGYAY 565
>gi|433602329|ref|YP_007034698.1| Type III restriction protein res subunit [Saccharothrix espanaensis
DSM 44229]
gi|407880182|emb|CCH27825.1| Type III restriction protein res subunit [Saccharothrix espanaensis
DSM 44229]
Length = 553
Score = 226 bits (577), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 142/387 (36%), Positives = 219/387 (56%), Gaps = 26/387 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + L L TN V+ QW
Sbjct: 181 QLRDYQRLAAQAFWAGG---SGVVVLPCGAGKTLVGAAAMAEAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V + TY ++ ++S+ K +E +R
Sbjct: 238 KRELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RKSKGEYKHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED + D+ LIGPK Y+ W
Sbjct: 291 DWGLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGQEGDVFSLIGPKRYDVPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV +T EY E ++ + L K ++ H
Sbjct: 350 RDIEAQGWIAPAECTEVRVTLTDNERLEYAIAEPDERYK-LCSTARTKLPVVRAILDRHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ I + D L +L E L P+I G+T + ER ++ AF+ +L + +SKV
Sbjct: 409 DEPTLVIGAYLDQLESLGE---ALDAPIIQGSTKNKEREQLFDAFRRG-ELRVLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR KG G++ A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKGD-------GRQ---AHFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT + Y+ RQ+FL +QGY++K++ +
Sbjct: 515 DTLDTDYAAHRQRFLAEQGYAYKIVDA 541
>gi|227504269|ref|ZP_03934318.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
gi|227199156|gb|EEI79204.1| ATP-dependent DNA helicase [Corynebacterium striatum ATCC 6940]
Length = 543
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 218/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + + L L TN V+ QW
Sbjct: 182 RDYQSYAADSFWSGG---SGVVVLPCGAGKTIVGAAAMAKTQATTLILVTNTVAGRQWRD 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ + +I ++ + KE + + TY +V ++++ + +E +R+W
Sbjct: 239 ELLRRTSLTESEIGEYSGEKKE----IKPITIATYQVVT---RKTKGEYRALELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED D+ LIGPK Y+A W +
Sbjct: 292 GLIIYDEVHLLPAPVFRMTSDL-QSRRRLGLTATLIREDGMEGDVFSLIGPKRYDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G+IA C EV M E Y + + + + + K RA + ++ H Q
Sbjct: 351 LEAAGYIATADCIEVRVDMDPEERMLYATAQ-PRDRYRIAASSSTKHRAVDKILAQHAGQ 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ I + D L L ++ L P+I G TS+ +R K+ Q F+ L + +SKV +
Sbjct: 410 QALIIGGYVDQLEELGKH---LDAPVIDGKTSNAKREKLFQQFREGA-LQILVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA + IQ+S GSR++EAQRLGR+LR K A GKE A FY+LV+ D+
Sbjct: 466 SIDLPEAALAIQVSGTFGSRQEEAQRLGRLLRPK-------ADGKE---ATFYTLVTRDS 515
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 516 IDAEYALHRQRFLAEQGYAYRLV 538
>gi|392945909|ref|ZP_10311551.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
gi|392289203|gb|EIV95227.1| DNA/RNA helicase, superfamily II [Frankia sp. QA3]
Length = 574
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/396 (35%), Positives = 226/396 (57%), Gaps = 28/396 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A + + L L TN V+ QW
Sbjct: 183 REYQKGAVAGFWEGG---SGVVVLPSGAGKTIVGAAAMAQAGATTLILVTNTVAGRQWRH 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + ++ R+W
Sbjct: 240 ELLRRTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---ARRKGEYLHLDLFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T + Y E ++ + + +K E L+R H
Sbjct: 352 IEAQGWIAPAECTEVRVTLTDDERMAYAVAEPEERYR-MCATAYSKRAVVERLVRRHS-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
GD+++V L L E L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 409 -GDRVLVIGAYLDQLDELGELLGAPVIQGSTRNRERERLFEAFRTG-EITTLVVSKVANV 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G+ A FY++V+ DT
Sbjct: 467 SIDLPEAGVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---AAHFYTVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS--LPPPDSGAD 420
+ Y+ RQ+FL +QGY++ +I + +P P AD
Sbjct: 517 VDQEYAAHRQRFLAEQGYAYTIIDADDIPDPRDAAD 552
>gi|323359212|ref|YP_004225608.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
StLB037]
gi|323275583|dbj|BAJ75728.1| DNA or RNA helicase of superfamily II [Microbacterium testaceum
StLB037]
Length = 549
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 210/383 (54%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ G SG++VLPCGAGK+LVG A + + L L TN VS QW
Sbjct: 183 RPYQRQAVDSFSEGG---SGVVVLPCGAGKTLVGAGAMAETRTTTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ KE V + TY ++ K +++ + +W
Sbjct: 240 ELLRRTTLTPEEIGEYSGQVKE----VKPVTIATYQILTAKRKGEYAHLALLDAL---DW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL+L DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 293 GLVLYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ C EV + EY + + + L P K L+ H +
Sbjct: 352 IEAQGFISPAACYEVRIDLPAYERLEYAAAADEDRYR-LAATAPAKIDVVRRLVDRHPDE 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R I+V L + E + L P I GAT ER ++ QAF+ +++ + +SKV +
Sbjct: 411 R---ILVIGQYLDQIDELSEALDAPKITGATPVAEREELFQAFRVG-EISLLIVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA+V IQ+S GSR++EAQRLGR+LR K + + A FY+L++ DT
Sbjct: 467 SVDLPEASVAIQVSGSFGSRQEEAQRLGRLLRPK----------QSNHTASFYTLIARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++ ++
Sbjct: 517 VDQDFAQNRQRFLAEQGYAYTIL 539
>gi|336120274|ref|YP_004575054.1| ATP-dependent DNA helicase [Microlunatus phosphovorus NM-1]
gi|334688066|dbj|BAK37651.1| putative ATP-dependent DNA helicase [Microlunatus phosphovorus
NM-1]
Length = 548
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/385 (35%), Positives = 214/385 (55%), Gaps = 30/385 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+++ + G SG++VLPCGAGK++VG ++ + + L L TN VS QW
Sbjct: 186 RPYQQQAADSFWHGG---SGVVVLPCGAGKTVVGAASMAHAQATTLILVTNTVSARQWRD 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +T+ D+I + S +K++ R V + TY ++ GG +E R
Sbjct: 243 ELLRRTTLTADEIGEY-SGAKKQIRP---VTIATYQVITTKRGGIHPH-----LELFGAR 293
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W
Sbjct: 294 DWGLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPW 352
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV +++ Y E K Y + + +I
Sbjct: 353 KDIEAQGYIAPADCVEVRVTLSEPERMTYAVAEPDVK----YRLASTAESKTQVVIDLVA 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ RG I+V + L + A +L P+I G T+ +R ++ +AF+ S +++ + +SKV
Sbjct: 409 KHRGVPILVIGQYVDQLEDLAARLDAPLITGETTVRQRERLYEAFR-SGEVDLLVVSKVA 467
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A V IQ+S GSR++EAQRLGR+LR K E A F ++V+
Sbjct: 468 NFSIDLPSAQVAIQVSGAFGSRQEEAQRLGRLLRPK----------SEGTTARFLAVVAR 517
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ RQ+FL +QGY++ ++
Sbjct: 518 DTVDADFAAHRQRFLAEQGYAYTIM 542
>gi|378550700|ref|ZP_09825916.1| hypothetical protein CCH26_11456 [Citricoccus sp. CH26A]
Length = 570
Score = 226 bits (576), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 140/387 (36%), Positives = 220/387 (56%), Gaps = 30/387 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ ++ + G SG++VLPCGAGK+LVG A + L L TN VS QW
Sbjct: 206 RPYQRMAVENFWAGG---SGVVVLPCGAGKTLVGAGAMATAGATTLVLVTNTVSARQWKA 262
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +T+ + +I ++ KE V + TY ++ GG +E + +
Sbjct: 263 ELLRRTTLTEAEIGEYSGAVKE----VRPVTIATYQVLTTKRGGIYPH-----LELVNDH 313
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R +++ LIGPK Y+A W
Sbjct: 314 DWGLIIYDEVHLLPAPIFRLTADL-QARRRLGLTATLVREDGRESEVFSLIGPKRYDAPW 372
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV + ++ Y E++ + + L + K ++ H
Sbjct: 373 KDIEAQGYIAPAECIEVRVELPRDERVAYAMAEDADRYR-LCSTSEVKLPVVRSIVERHP 431
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++++V L L E L P++ G+TS ER ++ AF+ ++ + +SKV
Sbjct: 432 ---GEQVLVIGQYLDQLQELGELLDAPVLTGSTSVAERQRLFGAFRDG-EIGVLVVSKVA 487
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K ED GK +A FY++VS
Sbjct: 488 NFSIDLPEASVAVQVSGAYGSRQEEAQRLGRLLRPK---ED----GK---SAHFYTVVSR 537
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT + Y+ KRQ+FL +QGY++ ++ +
Sbjct: 538 DTLDQDYAQKRQRFLAEQGYAYTILDA 564
>gi|114777697|ref|ZP_01452657.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
gi|114551913|gb|EAU54447.1| DEAD/DEAH box helicase-like protein [Mariprofundus ferrooxydans
PV-1]
Length = 554
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 134/384 (34%), Positives = 207/384 (53%), Gaps = 28/384 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ +G G+IVL CGAGK+LVG++ RI L + N + QW
Sbjct: 192 RDYQQQAVDAFVASGS--HGVIVLACGAGKTLVGMATMARIGMRTLIITPNTAAAHQWRA 249
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI--IEEIRNR 144
+ + + I +T KE + + TY M+ + R E+ + IE I
Sbjct: 250 ELLDKTQVSATDIGEYTGSRKE----IQPITIATYQMLTY---RPEQDGDMPHIELITKH 302
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR V S ++ +LGLTATL+RED D+ LIGPK ++ W
Sbjct: 303 AWGLIIFDEVHMLPAPVFRAV-SEIQARRRLGLTATLIREDGLERDVFSLIGPKRFDLPW 361
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + G IA C E+ PM++ + ++++K + N K R LI+ H
Sbjct: 362 RELEQSGHIAKAHCVEIRVPMSQHDHMAHATADDARKAYRIAAENSIKDRVATALIKKHA 421
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q I+V + L A L P+I G S ER ++ AF+ +L + +SKV
Sbjct: 422 DQ---GILVIGQYIKQLERIAAHLGAPLISGRMSSPERERLYAAFRAG-ELRLLVVSKVA 477
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A++ IQIS GSR++EAQRLGRILR +G AFFY+LVS
Sbjct: 478 NYAIDLPDASIAIQISGAFGSRQEEAQRLGRILRPQGG------------PAFFYTLVSD 525
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
++E+ ++ RQ+FL +QGY + +
Sbjct: 526 HSEELKFAVNRQRFLAEQGYDYLI 549
>gi|444431450|ref|ZP_21226617.1| putative ATP-dependent DNA helicase [Gordonia soli NBRC 108243]
gi|443887859|dbj|GAC68338.1| putative ATP-dependent DNA helicase [Gordonia soli NBRC 108243]
Length = 555
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A K + L L TN V+ QW
Sbjct: 183 RDYQSLAAESFWAGG---SGVVVLPCGAGKTMVGAAAMATAKATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T E +Y E +++K L K + ++ H
Sbjct: 352 IEAQGWIAPADCVEVRVTLTDEERLQYAVAE-AEEKYKLCSTAHTKVNVVKSILARH--- 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G +V + L E +L P+I G+T + ER + F+ S ++ T+ +SKV +
Sbjct: 408 KGSPTLVIGAYIDQLEELGRELDAPVIQGSTKNKEREVLFDRFR-SGEIQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K K+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK----------KDGGQAHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|332669171|ref|YP_004452179.1| helicase domain-containing protein [Cellulomonas fimi ATCC 484]
gi|332338209|gb|AEE44792.1| helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 548
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 208/383 (54%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQE ++ + G SG++VLPCGAGK+LVG A R + L L TN VS QW
Sbjct: 183 RPYQEHAVESFWHGG---SGVVVLPCGAGKTLVGAGAMARSSTTTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE V + TY ++ + + +E + R+W
Sbjct: 240 ELVRRTTLTEDEIGEYSGARKE----IRPVTIATYQVLT---TKRKGVYSHLELLDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK ++A W D
Sbjct: 293 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRFDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + Y E K + L K E ++ HE
Sbjct: 352 IEAQGYIAPADCVEVRLTLPDHERMLYATAEPEDKYR-LAATAAGKNAVVERIVAQHE-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V L L E A + +I G T ER ++ AF+ ++ + +SKV +
Sbjct: 409 -GAPTLVIGQYLDQLHELAEHVGADLITGETPVRERQRLFDAFRAG-EITKLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGRI+R K ++ A FY++V+ DT
Sbjct: 467 SIDLPEASVAIQVSGSFGSRQEEAQRLGRIMRPK----------EDGRTAHFYTVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++ ++
Sbjct: 517 VDQEFAAHRQRFLAEQGYAYSIL 539
>gi|17232195|ref|NP_488743.1| DNA repair helicase [Nostoc sp. PCC 7120]
gi|17133840|dbj|BAB76402.1| DNA repair helicase [Nostoc sp. PCC 7120]
Length = 563
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 222/386 (57%), Gaps = 27/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + +GR + SG+IVLPCGAGK++VG+SA ++++ L L+T+ SV QW
Sbjct: 190 RDYQRQAAEAFYQSGRVQGGSGVIVLPCGAGKTIVGMSAIAAVQENTLILSTSLTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAG-VVVTTYNMVAFGGKRSEESEKIIEEIRN 143
+ + + ++ I ++ + K N G + ++TY ++ + R E+ +
Sbjct: 250 RRELLDKTDLPEEAIAEYSGEVK-----NTGPITLSTYQILTYRPNR-EDDFPHFDLFSA 303
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R D+ LIGPK Y+
Sbjct: 304 RSWGLIIYDEVHLLPAPVFRITAEL-QARRRLGLTATLIREDGREGDVFALIGPKRYDVP 362
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEY-LKKENSKKKQALYVMNPNKFRACEFLIRF 262
W +L GFIA C E+ E Y L ++ + A NP+K + + L+
Sbjct: 363 WRELETEGFIATASCTEIRVSQDAERQMTYALAPRRNQFRVA--AENPHKVQVVKELL-- 418
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
E++ G +I++ + L L A P+I G T ER ++ QAF+ + L + LS+
Sbjct: 419 -EKESGHRILIIGEFLAQLETLAKVTGLPLITGKTPEKEREQLYQAFREGK-LGGLVLSR 476
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
VG+ +ID+P+A+++IQ+S GSR++EAQRLGR+LR K + G+ A FY+LV
Sbjct: 477 VGNFAIDLPDADILIQVSGKYGSRQEEAQRLGRVLRPK-------SDGR---PAQFYTLV 526
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
S T E ++ RQ FL +QGYS+ +
Sbjct: 527 SLRTCEEDFARHRQLFLTEQGYSYNI 552
>gi|302339342|ref|YP_003804548.1| helicase [Spirochaeta smaragdinae DSM 11293]
gi|301636527|gb|ADK81954.1| helicase domain protein [Spirochaeta smaragdinae DSM 11293]
Length = 557
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 137/384 (35%), Positives = 215/384 (55%), Gaps = 25/384 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+++ ++G+G+A SG IVLPCG+GK++VG+ ++ + L L TN +V QW
Sbjct: 191 RDYQKEAARALYGDGKAGSGFGTIVLPCGSGKTIVGMEVMRLMQTNTLILTTNVAAVHQW 250
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ ++QI +T D K V V TY ++ + + + + +R
Sbjct: 251 IDELLDKTSLTEEQIGEYTGDRKL----ICPVTVGTYQILTWRPDKEADFPHF-DLLRKY 305
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR V + ++ ++GLTATLVRED R D+ L+GPK Y+ W
Sbjct: 306 KWGLIIYDEVHLLPAPVFR-VTAEIQALRRVGLTATLVREDGREDDVFSLVGPKRYDVPW 364
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + G+IA C E+ P+ Y + + K + NP K + LI H
Sbjct: 365 RELEQKGWIAEAHCHEIRVPLPDSLKIGY-AVADKRGKYRIASENPVKIEITKELILNHT 423
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D I++ L L E A + P+I G T + ER +I ++F+ + I +SKV
Sbjct: 424 D---DHILIIGQYLNQLKEIAAAISAPLITGKTPNKEREEIYESFREGKT-RVIVVSKVA 479
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+ANV IQ+S GSR++EAQRLGRILR K E + FYSLVS
Sbjct: 480 NFAIDLPDANVAIQVSGTFGSRQEEAQRLGRILRPK------------ERGSTFYSLVSR 527
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ+FL +QGY +++
Sbjct: 528 YTTEEEFAANRQKFLTEQGYKYQI 551
>gi|374586244|ref|ZP_09659336.1| helicase domain-containing protein [Leptonema illini DSM 21528]
gi|373875105|gb|EHQ07099.1| helicase domain-containing protein [Leptonema illini DSM 21528]
Length = 608
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 144/389 (37%), Positives = 217/389 (55%), Gaps = 29/389 (7%)
Query: 27 RPYQEKSLSKMFGNGRAR---SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
R YQ K++ ++F G +R SG+IVLPCGAGK++VG+ + L L TN +S+ Q
Sbjct: 189 RDYQRKAV-EVFHAGGSRQGGSGVIVLPCGAGKTIVGIGVMQLVGAHTLILVTNTLSIRQ 247
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSE--ESEKIIEEI 141
W + + I +D I ++ + KE + + TYN++ K+ I E
Sbjct: 248 WKSEILDKTDISEDDIGEYSGEKKEL----KPITIATYNIITHRKKKGGAFTHYNIFGE- 302
Query: 142 RNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYE 201
WGL++ DEVH++PA +FR + S ++ +LGLTATLVRED D+ LIGPK Y+
Sbjct: 303 --GNWGLVVYDEVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEEDVFSLIGPKKYD 359
Query: 202 ANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIR 261
W +L K +IAN +C E+ M +E +Y + ++K L NP K A E ++
Sbjct: 360 VPWKELEKRSWIANAKCIEIRVEMDEELRLKY-SVSDDREKYRLASENPAKLDAIEKIMG 418
Query: 262 FHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321
H + I++ L L + PMI G T +ER ++ +AF+ R+ + +S
Sbjct: 419 VHGS---NNILIIGQYLQQLDVISQHFNLPMITGNTPLMERERLYKAFREGRE-PCLIVS 474
Query: 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSL 381
+V + SID+P+A V IQ+S GSR++EAQRLGR+LR KG ED M AFFY++
Sbjct: 475 RVANFSIDLPDARVAIQVSGTFGSRQEEAQRLGRVLRPKG--EDNM--------AFFYTV 524
Query: 382 VSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
V+ DT E ++ RQ FL +QGY + + T
Sbjct: 525 VTRDTTEERFAHNRQLFLAEQGYEYNLHT 553
>gi|441515360|ref|ZP_20997162.1| putative ATP-dependent DNA helicase [Gordonia amicalis NBRC 100051]
gi|441449827|dbj|GAC55123.1| putative ATP-dependent DNA helicase [Gordonia amicalis NBRC 100051]
Length = 559
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 220/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 186 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 243 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 296 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREDDVFSLIGPKRYDAPWKD 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T E +Y E +K + + K + ++ H+
Sbjct: 355 IEAQGWIAPAECIEVRVTLTDEERLQYAVAEPEEKYKLCSTAH-TKVNVVKAILNKHQ-- 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 412 -GAPTLVIGAYIDQLEELGRELDCPVIQGSTKNKEREILFDRFR-SGELQTLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 470 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVSRDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 520 LDADYAAHRQRFLAEQGYAYRI 541
>gi|381181009|ref|ZP_09889845.1| helicase domain protein [Treponema saccharophilum DSM 2985]
gi|380767014|gb|EIC01017.1| helicase domain protein [Treponema saccharophilum DSM 2985]
Length = 614
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 214/384 (55%), Gaps = 25/384 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + G+ A +G IVLPCGAGK++VG++ +K S L + TN +V QW
Sbjct: 230 RQYQSEAADSIVGDKGAGTGFGTIVLPCGAGKTIVGMATMALLKTSTLIITTNISAVHQW 289
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ +QI +T +SK V V TY ++ + ++ R R
Sbjct: 290 IDELVDKTTLTREQISEYTGESKT----IKPVTVATYQILTWRPEKDGPYPHF-SLFRQR 344
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR V++ ++ ++GLTATLVRED + L+GPK Y+ W
Sbjct: 345 NWGLIVYDEVHMLPAPVFR-VVAEIQAVRRIGLTATLVREDGCEGHVFSLVGPKRYDVPW 403
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL GFIA +C EV P+ + EY + +KK + NP K F+ R E
Sbjct: 404 KDLEHSGFIATAECIEVKVPLPESMEIEYAVADQ-RKKHKIASENPAKE---SFVRRIVE 459
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
DKI+V + L A L P+I G T + ER +I + F+ +++ + +SKV
Sbjct: 460 SSPDDKILVIGQYIEQLQSIAQMLGCPIITGRTPNSERDEIYRKFRTG-EISVLVVSKVA 518
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E + F++L++
Sbjct: 519 NFAIDLPDASVAIQVSGTFGSRQEEAQRLGRILRPK------------ERKSRFFTLITR 566
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
+T E + RQ+FL +QGYS+++
Sbjct: 567 NTTEEDFGANRQKFLAEQGYSYRI 590
>gi|407641888|ref|YP_006805647.1| putative DNA helicase [Nocardia brasiliensis ATCC 700358]
gi|407304772|gb|AFT98672.1| putative DNA helicase [Nocardia brasiliensis ATCC 700358]
Length = 545
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 178 RDYQELAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWRR 234
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 235 ELLARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 287
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 288 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 346
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ + L K + ++ H
Sbjct: 347 IEAQGWIAPADCVEVRVTLTDAERMAYATAEPEERYK-LCSTAHTKIPVVQSILAKHADA 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E L P+I G+T ER ++ +AF+ ++ + +SKV +
Sbjct: 406 ---PTLVIGAYLDQLDELGAALNAPVIQGSTKTKEREELFEAFRQG-EVPVLVVSKVANF 461
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 462 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 511
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 512 LDAEYAAHRQRFLAEQGYAYRI 533
>gi|383826946|ref|ZP_09982061.1| hypothetical protein MXEN_18794 [Mycobacterium xenopi RIVM700367]
gi|383331524|gb|EID10020.1| hypothetical protein MXEN_18794 [Mycobacterium xenopi RIVM700367]
Length = 543
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 25/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 176 RDYQRLAAESFWSGG---SGVVVLPCGAGKTLVGAAAMAKASATTLILVTNTVAARQWKR 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I ++ + KE V ++TY ++ ++ + + +E +R+W
Sbjct: 233 ELVARTSLTADEIGEYSGERKE----IRPVTISTYQLMTRRNRKGDY--RHLELFDSRDW 286
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 287 GLIIYDEVHLLPAPVFRLTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 345
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + + +K + ++ H
Sbjct: 346 IEAQGWIAPAECVEVRVTLTDNERMRYATAEPEERYRVCSTAH-SKIAVVKSILSRHP-- 402
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E L P+I G+T ER + AF+ ++ T+ +SKV +
Sbjct: 403 -GEPTLVIGAYLDQLEELGALLGAPVIQGSTKTAEREALFDAFRRG-EVTTLVVSKVANF 460
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
+ID+PEA V +Q+S GSR++EAQRLGR+LR K AGG A FYS+V+ D+
Sbjct: 461 AIDLPEAAVAVQVSGTFGSRQEEAQRLGRLLRPK-------AGGG---GAVFYSVVARDS 510
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
Q+ Y+ RQ+FL +QGY + +
Sbjct: 511 QDTEYAAHRQRFLAEQGYGYVI 532
>gi|340059837|emb|CCC54234.1| putative DNA repair helicase and transcription factor protein,
fragment, partial [Trypanosoma vivax Y486]
Length = 584
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/387 (34%), Positives = 202/387 (52%), Gaps = 64/387 (16%)
Query: 3 EEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS 62
++YD+ D +N+ LK +PRPYQ ++ +G RSG IVLPCGAGK+LVG+
Sbjct: 204 QQYDYERDMSIRSINIMLKTQTKPRPYQIDAVDAAVSDGFLRSGCIVLPCGAGKTLVGIM 263
Query: 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTI-----QDD-------------------- 97
C++KK L L +VSV+QW Q +ST+ D+
Sbjct: 264 LLCKVKKPTLILCAGSVSVEQWKNQILEFSTLGCSLGNDENRSSSGSGTASGRQRTRIEG 323
Query: 98 --QICRFTSDSKERFRGNAGVVVTTYNMVAFG----------------------GKRSEE 133
+I T+ K+ + +V+TTYNM+ G+RS
Sbjct: 324 VARISCLTAKQKDDITDDTDIVLTTYNMLVTAHKAQARYHAEHCKVAVDTQRKRGRRSNP 383
Query: 134 SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNF 193
E++ + +GLL+MDEVHV+PA +++ + + +GLTAT VRED +I DL
Sbjct: 384 KERLFQP-----YGLLIMDEVHVMPAETYKESLGFINAKGVIGLTATYVREDAKIRDLFH 438
Query: 194 LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----KKKQALYVM 248
L+GPKL++ +W L G++ANV C E+ P+T++F EY+++ +S ++ L VM
Sbjct: 439 LVGPKLFDVSWETLASSGYLANVTCVEILTPLTRQFSLEYMERSSSDSTGAHRRIPLLVM 498
Query: 249 ----NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTK 304
NPNK LIR H + KI+VF D++ L EY+ L P+I G T H ER
Sbjct: 499 LAAANPNKMLCVMELIRRHLAE-SSKILVFCDHIALLKEYSKVLNAPVICGETPHRERLM 557
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIP 331
I F+ + +N I +S+VGD ++++P
Sbjct: 558 IFSDFQSTSKVNVICISRVGDVTVNLP 584
>gi|120406004|ref|YP_955833.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii
PYR-1]
gi|119958822|gb|ABM15827.1| type III restriction enzyme, res subunit [Mycobacterium vanbaalenii
PYR-1]
Length = 549
Score = 225 bits (574), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQQMAADSFWDGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ +R++ K +E +R
Sbjct: 238 KRELVARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + L K + ++ H
Sbjct: 350 KDIEAQGWIAPAECVEVRVTMTDNERMMYATAEPDERYK-LCATAHTKIAVVKSILERHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +V L L E +L P+I G+T + ER + AF+ ++ T+ +SKV
Sbjct: 409 DE---PTLVIGAYLDQLDELGTELNAPVIQGSTKNAEREALFDAFRRG-EIRTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYVI 538
>gi|158312038|ref|YP_001504546.1| helicase domain-containing protein [Frankia sp. EAN1pec]
gi|158107443|gb|ABW09640.1| helicase domain protein [Frankia sp. EAN1pec]
Length = 545
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 217/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A R + L L TN V+ QW
Sbjct: 183 RDYQKGAVAGFWEGG---SGVVVLPSGAGKTVVGAAAMARAGATTLILVTNTVAGRQWRT 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ + KE V + TY ++ R + +E R+W
Sbjct: 240 ELLRRTTLTEDEIGEYSGERKE----IRPVTIATYQVMT---ARRKGEYLHLELFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWRD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T + Y E ++ + + + R E+
Sbjct: 352 IEAQGWIAPAECTEVRVTLTDDERMTYAVAEPEERYKVCSTAHSKNL----VVRRLVERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
D+++V L L E L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 408 ADDRVLVIGAYLDQLDELGRLLDAPVIQGSTRNKERERLFEAFRTG-EITTLVVSKVANV 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G+ +A FY++VS DT
Sbjct: 467 SIDLPEAGVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---SAHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY++ ++
Sbjct: 517 LDQEYAAHRQRFLAEQGYAYTIV 539
>gi|421871952|ref|ZP_16303572.1| type III restriction enzyme, res subunit [Brevibacillus
laterosporus GI-9]
gi|372459209|emb|CCF13121.1| type III restriction enzyme, res subunit [Brevibacillus
laterosporus GI-9]
Length = 563
Score = 225 bits (573), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/385 (37%), Positives = 215/385 (55%), Gaps = 24/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + NG A SG++ LPCGAGK+++G+ R + + L L T+ SV QW
Sbjct: 190 RDYQLAAVDAFYANGTAYGGSGVLCLPCGAGKTIIGIGTMSRFETATLILTTSTTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T+ D + +T + KE V VTTY MV + SEE + +
Sbjct: 250 INEIITKTTLTADMVGEYTGEQKE----VRPVTVTTYQMVTSRQRGSEEFPHM-NLFTDY 304
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +F K+ S ++ +LGLTATLVRED + ++ LIGPK YE W
Sbjct: 305 NWGLIIYDEVHMLPAPIF-KMTSSIQAKRRLGLTATLVREDGKEDEVFSLIGPKKYEMPW 363
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
L G+IA C EV P+ + E +++K L NP K + L+R
Sbjct: 364 KALEAQGWIATAFCKEVRLPLPS-IYREAYAFSGTREKYRLAAENPIKVNWVQKLLR--- 419
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
Q + D I++ + L A L P+I G T +R + + FK ++ + +SKV
Sbjct: 420 QHKDDHILIIGQYIKQLELVANTLGLPLITGKTPEEDRGRYYEMFKRG-EIKQLVISKVA 478
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+ANV IQIS GSR++EAQRLGRILR K + A+FY+LVS
Sbjct: 479 NFAVDLPDANVAIQISGTFGSRQEEAQRLGRILRPKATNQ-----------AYFYTLVSR 527
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT+E +++KRQ FL++QGY +++I
Sbjct: 528 DTREQEFASKRQMFLLEQGYHYQII 552
>gi|374581962|ref|ZP_09655056.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
gi|374418044|gb|EHQ90479.1| DNA/RNA helicase, superfamily II [Desulfosporosinus youngiae DSM
17734]
Length = 569
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 139/387 (35%), Positives = 214/387 (55%), Gaps = 27/387 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ +++ G R SG++VLPCGAGK+++G+ ++ L L TN +V QW
Sbjct: 199 RSYQQGAVATFHQQGSVRGGSGVLVLPCGAGKTVIGMGVMMELQCETLILTTNNSAVKQW 258
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI--IEEIR 142
+ + +T++ Q+ +T + KE V V TY ++ R++
Sbjct: 259 LRELRDKTTLEASQMGEYTGEKKE----ICPVTVATYQILTH---RTQAGGGFDHFGLFN 311
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+ WGL++ DEVH++PA +FR L ++ +LGLTATLVRED + ++ LIGPK +
Sbjct: 312 EKNWGLIIYDEVHLLPAPVFRATAEL-QAKRRLGLTATLVREDGKEDEVFTLIGPKKMDV 370
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W L G+IA +C E M+K+ +Y E K K L NP K L+
Sbjct: 371 PWKVLESQGWIATAECMEWRISMSKDRRMDYALAEE-KGKFRLAAENPRKLNKVSELM-- 427
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
E+ R D ++V + L A +L P+I G T ER ++ + F+ R L+ + +SK
Sbjct: 428 -ERHRDDLVLVIGQYVRQLEMLARELDAPLITGKTPQRERERLYEEFRSGR-LHCLVVSK 485
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + +ID+P+ANV +Q+S GSR++EAQRLGRILR K + E A+FYSLV
Sbjct: 486 VANFAIDLPDANVAVQVSGTFGSRQEEAQRLGRILRPK----------QGEGKAYFYSLV 535
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVI 409
S DT+E ++ RQ FL +QGY++K++
Sbjct: 536 SKDTKEQEFAMHRQLFLTEQGYAYKIM 562
>gi|333918492|ref|YP_004492073.1| DNA repair helicase [Amycolicicoccus subflavus DQS3-9A1]
gi|333480713|gb|AEF39273.1| DNA repair helicase [Amycolicicoccus subflavus DQS3-9A1]
Length = 555
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 134/383 (34%), Positives = 219/383 (57%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + + G SG++VLPCG+GK++VG +A + + + L L TN V+ QW
Sbjct: 184 RDYQRMAANSFWDGG---SGVVVLPCGSGKTIVGAAAMAKAQATTLILVTNTVAGRQWKR 240
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++++++I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 241 ELLARTSLKEEEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 293
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 294 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFALIGPKRYDAPWKD 352
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E ++ + + K + ++ H
Sbjct: 353 IEAQGWIAPADCIEVRVTLTEAERMAYAVAEPEERYRLCSTAH-TKVAVVKAILDKHPDA 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V + L E +L P+I G+T + ER + AF+ ++ T+ +SKV +
Sbjct: 412 ---PTLVIGAYIDQLEELGAELDAPVIQGSTRNKEREALYDAFRRG-EIQTLVVSKVANF 467
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K K+ + A FYS+VS DT
Sbjct: 468 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK----------KDGHQAHFYSVVSRDT 517
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ Y+ RQ+FL +QGY+++++
Sbjct: 518 LDTEYAAHRQRFLAEQGYAYRIV 540
>gi|226364428|ref|YP_002782210.1| ATP-dependent DNA helicase [Rhodococcus opacus B4]
gi|226242917|dbj|BAH53265.1| putative ATP-dependent DNA helicase [Rhodococcus opacus B4]
Length = 559
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 215/386 (55%), Gaps = 26/386 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+
Sbjct: 188 HWHLRDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGR 244
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +++ +++I ++ + KE R V + TY ++ +R++ K +E
Sbjct: 245 QWKRELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFD 297
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 298 SRDWGLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 356
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV +T Y E ++ Y + +
Sbjct: 357 PWKDIEAQGWIAPADCVEVRVTLTDAERMAYAVAEPDER----YKLCSTAHTKIAVVKSI 412
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
E+ ++ L L E L P+I G+T + ER ++ F+ ++ T+ +SK
Sbjct: 413 LERHTDAPTLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSK 471
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V
Sbjct: 472 VANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVV 521
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
+ DT + Y+ RQ+FL +QGY++++
Sbjct: 522 ARDTLDAEYAAHRQRFLAEQGYAYRI 547
>gi|448824182|ref|YP_007417351.1| putative helicase [Corynebacterium urealyticum DSM 7111]
gi|448277679|gb|AGE37103.1| putative helicase [Corynebacterium urealyticum DSM 7111]
Length = 556
Score = 225 bits (573), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 144/396 (36%), Positives = 216/396 (54%), Gaps = 34/396 (8%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQE + + G SG++VLPCGAGK++VG ++ + K + L L TN V+ QW
Sbjct: 186 QLRDYQEMAADSFWEGG---SGVVVLPCGAGKTMVGAASMAKAKATTLILVTNTVAGRQW 242
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE R V + TY +V ++S+ + +E +R
Sbjct: 243 KDELVRRTSLTEDEIGEYSGEKKE-IR---PVTIATYQVVT---RKSKGEYRALELFDSR 295
Query: 145 EWGLLLMDEVHVVPA----HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLY 200
+WGL++ DEVH++PA H R +S G LVRED R D+ LIGPK Y
Sbjct: 296 DWGLIIYDEVHLLPAPGVPHDLRPAVSPPS-----GAHRHLVREDGREGDVFSLIGPKRY 350
Query: 201 EANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLI 260
+A W D+ G+IA C EV +++ Y E S K + L P K R + L+
Sbjct: 351 DAPWKDIEAQGWIAPADCTEVRVQLSESERMVYATAEQSDKYR-LAATTPAKNRVVKKLL 409
Query: 261 RFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320
H ++ I + D L E A +L P+I G TS +R K+ Q F+ ++ T+ +
Sbjct: 410 AMHPEEPALIIGAYVDQ---LEEIAEELDVPVIDGKTSTAKREKLYQQFRDG-EITTLAV 465
Query: 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380
SKV + SID+P A+V IQIS GSR++EAQRLGRILR K GG AFFY+
Sbjct: 466 SKVANFSIDLPGASVAIQISGTFGSRQEEAQRLGRILRPKPD------GG----GAFFYT 515
Query: 381 LVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPD 416
+V+ DT + Y+ R +FL +QGY + ++ + PD
Sbjct: 516 VVTRDTLDADYAAHRMRFLAEQGYGYGIMDAADLPD 551
>gi|379706890|ref|YP_005262095.1| putative DNA helicase [Nocardia cyriacigeorgica GUH-2]
gi|374844389|emb|CCF61451.1| putative DNA helicase [Nocardia cyriacigeorgica GUH-2]
Length = 552
Score = 225 bits (573), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 140/382 (36%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A R K + L L TN V+ QW
Sbjct: 185 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMARAKATTLILVTNTVAGRQWRR 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 242 ELLARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ + L K E ++ H+
Sbjct: 354 IEAQGWIAPADCIEVRVTLTDAERMAYATAEPEERYK-LCSTAHTKIAVVESILAKHKDA 412
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E L P+I G+T ER + ++F+ ++ + +SKV +
Sbjct: 413 ---PTLVIGAYLEQLEELGAALDAPVIQGSTKTKEREALFESFRRG-EIPVLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 469 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK------QDGGQ----AHFYSVVARDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 519 LDAEYAAHRQRFLAEQGYAYRI 540
>gi|419962442|ref|ZP_14478434.1| DNA repair helicase [Rhodococcus opacus M213]
gi|424854109|ref|ZP_18278467.1| DNA repair helicase [Rhodococcus opacus PD630]
gi|356664156|gb|EHI44249.1| DNA repair helicase [Rhodococcus opacus PD630]
gi|414572195|gb|EKT82896.1| DNA repair helicase [Rhodococcus opacus M213]
Length = 559
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 192 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 248
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ +R++ K +E +R+W
Sbjct: 249 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFDSRDW 301
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 302 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 360
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ Y + + E+
Sbjct: 361 IEAQGWIAPADCVEVRVTLTDAERMSYAVAEPDER----YKLCSTAHTKIAVVKSILERH 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ L L E L P+I G+T + ER ++ F+ ++ T+ +SKV +
Sbjct: 417 TDAPTLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANF 475
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 476 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 525
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 526 LDAEYAAHRQRFLAEQGYAYRI 547
>gi|433640979|ref|YP_007286738.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070008]
gi|432157527|emb|CCK54805.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070008]
Length = 542
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTAGL-QSKRRLGLTATLIREDRREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|397735054|ref|ZP_10501757.1| type III restriction enzyme, res subunit [Rhodococcus sp. JVH1]
gi|396929279|gb|EJI96485.1| type III restriction enzyme, res subunit [Rhodococcus sp. JVH1]
Length = 559
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 192 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 248
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ +R++ K +E +R+W
Sbjct: 249 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFDSRDW 301
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 302 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 360
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ Y + + E+
Sbjct: 361 IEAQGWIAPADCVEVRVTLTDAERMSYAVAEPDER----YKLCSTAHTKIAVVKSILERH 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ L L E L P+I G+T + ER ++ F+ ++ T+ +SKV +
Sbjct: 417 TDAPTLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANF 475
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 476 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 525
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 526 LDAEYAAHRQRFLAEQGYAYRI 547
>gi|262201196|ref|YP_003272404.1| helicase [Gordonia bronchialis DSM 43247]
gi|262084543|gb|ACY20511.1| helicase domain protein [Gordonia bronchialis DSM 43247]
Length = 555
Score = 224 bits (572), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 216/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ ++S+ + ++ +R+W
Sbjct: 240 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYRNLDLFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T +Y E +K + + L R + Q
Sbjct: 352 IEAQGWIAPAECIEVRVTLTDNERLQYAVAEPEEKYKLCSTAHTKVNVVKSILARHSDSQ 411
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V + L E +L P+I G+T + ER + F+ S +L T+ +SKV +
Sbjct: 412 ----TLVIGAYIDQLEELGRELDAPVIQGSTKNKEREALFDRFR-SGELQTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GGQ----AHFYSVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 517 LDADYAAHRQRFLAEQGYAYRI 538
>gi|336180242|ref|YP_004585617.1| helicase domain-containing protein [Frankia symbiont of Datisca
glomerata]
gi|334861222|gb|AEH11696.1| helicase domain-containing protein [Frankia symbiont of Datisca
glomerata]
Length = 548
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 220/390 (56%), Gaps = 26/390 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQKGAVAGFWEGG---SGVVVLPSGAGKTIVGAAAMAHARATTLILVTNTVAGRQWRS 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ R + +E R+W
Sbjct: 240 ELLRRTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---ARRKGEYLHLELFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T++ Y E ++ Y M E + R ++
Sbjct: 352 IEAQGWIAPAECTEVRVTLTEDERMAYAVAETEER----YRMCATAHSKREVVRRLVQRH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
D+++V L L + L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 408 ADDQVLVIGAYLDQLDQLGELLDAPVIQGSTRNRERERLFEAFRTG-EIRTLVVSKVANV 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K A G+ A FY++VS DT
Sbjct: 467 SIDLPEAAVAIQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---GAHFYTVVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPPD 416
+ Y+ RQ+FL +QGY + ++ + PD
Sbjct: 517 IDQEYAAHRQRFLTEQGYVYMIVDADDIPD 546
>gi|433629951|ref|YP_007263579.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070010]
gi|432161544|emb|CCK58889.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070010]
Length = 542
Score = 224 bits (571), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 176 RDYQQLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQWKR 232
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R+W
Sbjct: 233 ELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSRDW 285
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 286 GLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 344
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H +
Sbjct: 345 IEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHPDE 403
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV +
Sbjct: 404 ---QTLVIGAYLDQLDELGAELSAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANF 459
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+ D+
Sbjct: 460 SIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVARDS 509
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 510 LDAEYAAHRQRFLAEQGYGYII 531
>gi|427716121|ref|YP_007064115.1| type III restriction protein res subunit [Calothrix sp. PCC 7507]
gi|427348557|gb|AFY31281.1| type III restriction protein res subunit [Calothrix sp. PCC 7507]
Length = 556
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 138/386 (35%), Positives = 219/386 (56%), Gaps = 27/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ + + +G+ + SG+IVLPCGAGK++VG++A +++S L L+T+ SV QW
Sbjct: 190 RDYQKSAAEAFYQSGKVQGGSGVIVLPCGAGKTIVGMAAIASVQESTLILSTSLTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAG-VVVTTYNMVAFGGKRSEESEKIIEEIRN 143
+ + + +D I ++ + K N G V ++TY ++ + R ++ + R
Sbjct: 250 RRELLDKTDLPEDAIAEYSGEVK-----NTGPVTLSTYQILTYRSHRDKDFPHF-DLFRA 303
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R D+ LIGPK Y+
Sbjct: 304 RAWGLIIYDEVHLLPAPVFRITAEL-QARRRLGLTATLIREDGREGDVFALIGPKRYDVP 362
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ-ALYVMNPNKFRACEFLIRF 262
W +L GFIA C E+ E Y S++ Q + NP K + + L+
Sbjct: 363 WRELEGEGFIATANCTEIRVSQDTERQMAYALA--SRRNQFRVASENPQKVKVVKDLL-- 418
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
++ G +I++ + + L A P+I G T ER K+ Q F C+ L + LS+
Sbjct: 419 -AKESGHRILIIGEFISQLETLAQVTGLPLITGKTPEREREKLYQDF-CNGKLAGLVLSR 476
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
VG+ +ID+P+A+++IQ+S GSR++EAQRLGRILR K + R A FY++V
Sbjct: 477 VGNFAIDLPDADILIQVSGKYGSRQEEAQRLGRILRP--KFDGRPAN--------FYTIV 526
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
S T E ++ R FL +QGYS+++
Sbjct: 527 SLRTCEEDFARHRHLFLTEQGYSYQI 552
>gi|229488859|ref|ZP_04382725.1| DNA or RNA helicase of superfamily II [Rhodococcus erythropolis
SK121]
gi|453071394|ref|ZP_21974545.1| ATP-dependent DNA helicase [Rhodococcus qingshengii BKS 20-40]
gi|229324363|gb|EEN90118.1| DNA or RNA helicase of superfamily II [Rhodococcus erythropolis
SK121]
gi|452759438|gb|EME17801.1| ATP-dependent DNA helicase [Rhodococcus qingshengii BKS 20-40]
Length = 552
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 216/386 (55%), Gaps = 26/386 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ+ + + G SG++VLPCGAGK++VG +A + K + L L TN V+
Sbjct: 181 HWELRDYQQMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGR 237
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +++ +++I ++ + KE V + TY ++ +R++ K +E
Sbjct: 238 QWKRELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFD 290
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 291 SRDWGLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 349
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV MT Y E ++ + + K + ++
Sbjct: 350 PWKDIEAQGWIAPADCVEVRVTMTDAERMSYAVAEPEERYKLCSTAH-TKIAVVKSILAK 408
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H +V L L E L P+I G+T + ER + F+ ++ T+ +SK
Sbjct: 409 HPDS---PTLVIGAYLDQLDELGEALNAPVIKGSTKNKEREILFDQFRNG-EIQTLVVSK 464
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V
Sbjct: 465 VANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVV 514
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
S DT + Y+ RQ+FL +QGY++++
Sbjct: 515 SRDTLDAEYAAHRQRFLAEQGYAYRI 540
>gi|433650069|ref|YP_007295071.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
gi|433299846|gb|AGB25666.1| DNA/RNA helicase, superfamily II [Mycobacterium smegmatis JS623]
Length = 549
Score = 224 bits (571), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQEMAADSFWEGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 240 ELINRTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + ++ K + ++ H+
Sbjct: 352 IEAQGWIAPAECIEVRVTMTDNERMLYAVAEPDERYKLCSTVH-TKIAVVKSILDKHQ-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++ +V L L E +L P+I G+T ER + AF+ +++T+ +SKV +
Sbjct: 409 -GEQTLVIGAYLDQLDELGQELNAPVIQGSTKTAEREALFDAFRRG-EISTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD-----GGG-----AMFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYVI 538
>gi|433633918|ref|YP_007267545.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070017]
gi|432165511|emb|CCK62989.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140070017]
Length = 538
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDNERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELSAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|111021918|ref|YP_704890.1| DNA repair helicase [Rhodococcus jostii RHA1]
gi|110821448|gb|ABG96732.1| probable DNA repair helicase [Rhodococcus jostii RHA1]
Length = 584
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 217 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 273
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ +R++ K +E +R+W
Sbjct: 274 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFDSRDW 326
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 327 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 385
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ Y + + E+
Sbjct: 386 IEAQGWIAPADCVEVRVTLTDAERMSYAVAEPDER----YKLCSTAHTKIAVVKSILERH 441
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ L L E L P+I G+T + ER ++ F+ ++ T+ +SKV +
Sbjct: 442 TDAPTLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANF 500
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 501 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 550
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 551 LDAEYAAHRQRFLAEQGYAYRI 572
>gi|148660638|ref|YP_001282161.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis H37Ra]
gi|148822069|ref|YP_001286823.1| DNA helicase ercc3 [Mycobacterium tuberculosis F11]
gi|253800117|ref|YP_003033118.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 1435]
gi|254549837|ref|ZP_05140284.1| DNA helicase ercc3 [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289446426|ref|ZP_06436170.1| DNA helicase ercc3 [Mycobacterium tuberculosis CPHL_A]
gi|289573483|ref|ZP_06453710.1| DNA helicase ercc3 [Mycobacterium tuberculosis K85]
gi|289744587|ref|ZP_06503965.1| DNA helicase ercc3 [Mycobacterium tuberculosis 02_1987]
gi|289752915|ref|ZP_06512293.1| DNA helicase ercc3 [Mycobacterium tuberculosis EAS054]
gi|289756947|ref|ZP_06516325.1| DNA helicase ercc3 [Mycobacterium tuberculosis T85]
gi|289760993|ref|ZP_06520371.1| DNA helicase ercc3 [Mycobacterium tuberculosis GM 1503]
gi|297730363|ref|ZP_06959481.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN R506]
gi|298524354|ref|ZP_07011763.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306774985|ref|ZP_07413322.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu001]
gi|306782101|ref|ZP_07420438.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu002]
gi|306783529|ref|ZP_07421851.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu003]
gi|306792234|ref|ZP_07430536.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu005]
gi|306796632|ref|ZP_07434934.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu006]
gi|306802519|ref|ZP_07439187.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu008]
gi|306966897|ref|ZP_07479558.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu009]
gi|307078820|ref|ZP_07487990.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu011]
gi|308375273|ref|ZP_07443369.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu007]
gi|308378741|ref|ZP_07483753.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu010]
gi|313657689|ref|ZP_07814569.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN V2475]
gi|339630926|ref|YP_004722568.1| DNA helicase [Mycobacterium africanum GM041182]
gi|375297350|ref|YP_005101617.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|385997642|ref|YP_005915940.1| DNA helicase ErcC3 [Mycobacterium tuberculosis CTRI-2]
gi|392385571|ref|YP_005307200.1| ercc3 [Mycobacterium tuberculosis UT205]
gi|392433556|ref|YP_006474600.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 605]
gi|397672677|ref|YP_006514212.1| DNA excision repair protein ERCC-3 [Mycobacterium tuberculosis
H37Rv]
gi|422811811|ref|ZP_16860205.1| DNA helicase ercc3 [Mycobacterium tuberculosis CDC1551A]
gi|424805643|ref|ZP_18231074.1| DNA helicase ercc3 [Mycobacterium tuberculosis W-148]
gi|448824750|ref|NP_215376.3| DNA helicase Ercc3 [Mycobacterium tuberculosis H37Rv]
gi|148504790|gb|ABQ72599.1| putative ATP-dependent DNA helicase [Mycobacterium tuberculosis
H37Ra]
gi|148720596|gb|ABR05221.1| DNA helicase ercc3 [Mycobacterium tuberculosis F11]
gi|253321620|gb|ACT26223.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 1435]
gi|289419384|gb|EFD16585.1| DNA helicase ercc3 [Mycobacterium tuberculosis CPHL_A]
gi|289537914|gb|EFD42492.1| DNA helicase ercc3 [Mycobacterium tuberculosis K85]
gi|289685115|gb|EFD52603.1| DNA helicase ercc3 [Mycobacterium tuberculosis 02_1987]
gi|289693502|gb|EFD60931.1| DNA helicase ercc3 [Mycobacterium tuberculosis EAS054]
gi|289708499|gb|EFD72515.1| DNA helicase ercc3 [Mycobacterium tuberculosis GM 1503]
gi|289712511|gb|EFD76523.1| DNA helicase ercc3 [Mycobacterium tuberculosis T85]
gi|298494148|gb|EFI29442.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308216480|gb|EFO75879.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu001]
gi|308325182|gb|EFP14033.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu002]
gi|308331690|gb|EFP20541.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu003]
gi|308339288|gb|EFP28139.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu005]
gi|308342965|gb|EFP31816.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu006]
gi|308346849|gb|EFP35700.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu007]
gi|308350765|gb|EFP39616.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu008]
gi|308355426|gb|EFP44277.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu009]
gi|308359379|gb|EFP48230.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu010]
gi|308363287|gb|EFP52138.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu011]
gi|323720724|gb|EGB29800.1| DNA helicase ercc3 [Mycobacterium tuberculosis CDC1551A]
gi|326904919|gb|EGE51852.1| DNA helicase ercc3 [Mycobacterium tuberculosis W-148]
gi|328459855|gb|AEB05278.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|339330282|emb|CCC25942.1| putative DNA helicase ERCC3 [Mycobacterium africanum GM041182]
gi|344218688|gb|AEM99318.1| DNA helicase ErcC3 [Mycobacterium tuberculosis CTRI-2]
gi|378544122|emb|CCE36395.1| ercc3 [Mycobacterium tuberculosis UT205]
gi|392054965|gb|AFM50523.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 605]
gi|395137582|gb|AFN48741.1| DNA excision repair protein ERCC-3 [Mycobacterium tuberculosis
H37Rv]
gi|440580326|emb|CCG10729.1| putative DNA HELICASE ERCC3 [Mycobacterium tuberculosis 7199-99]
gi|444894355|emb|CCP43609.1| DNA helicase Ercc3 [Mycobacterium tuberculosis H37Rv]
Length = 542
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|392418210|ref|YP_006454815.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
gi|390617986|gb|AFM19136.1| DNA/RNA helicase, superfamily II [Mycobacterium chubuense NBB4]
Length = 549
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 140/384 (36%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQQMAADSFWDGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ + +I ++ + KE V + TY ++ +R++ K +E +R
Sbjct: 238 KRELIARTSLTESEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + L K + ++ H
Sbjct: 350 KDIEAQGWIAPAECVEVRVTMTDNERMLYATAEPDERYK-LCATAHTKIAVVKSILERHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 409 DE---PTLVIGAYLDQLDELGAELDAPVIQGSTKTAEREALFDAFRRG-EIRTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K AGG A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK-------AGGG---GAVFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYVI 538
>gi|226187251|dbj|BAH35355.1| putative ATP-dependent DNA helicase [Rhodococcus erythropolis PR4]
Length = 552
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/386 (36%), Positives = 216/386 (55%), Gaps = 26/386 (6%)
Query: 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
H + R YQ+ + + G SG++VLPCGAGK++VG +A + K + L L TN V+
Sbjct: 181 HWELRDYQQMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGR 237
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + +++ +++I ++ + KE V + TY ++ +R++ K +E
Sbjct: 238 QWKRELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFD 290
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A
Sbjct: 291 SRDWGLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDA 349
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
W D+ G+IA C EV MT Y E ++ + + K + ++
Sbjct: 350 PWKDIEAQGWIAPADCVEVRVTMTDAERMSYAVAEPEERYKLCSTAH-TKIAVVKSILAK 408
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H +V L L E L P+I G+T + ER + F+ ++ T+ +SK
Sbjct: 409 HPDS---PTLVIGAYLDQLDELGEALNAPVIKGSTKNKEREILFDQFRNG-EIQTLVVSK 464
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V
Sbjct: 465 VANFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVV 514
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKV 408
S DT + Y+ RQ+FL +QGY++++
Sbjct: 515 SRDTLDAEYAAHRQRFLAEQGYAYRI 540
>gi|332297020|ref|YP_004438942.1| helicase domain-containing protein [Treponema brennaborense DSM
12168]
gi|332180123|gb|AEE15811.1| helicase domain-containing protein [Treponema brennaborense DSM
12168]
Length = 638
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 217/393 (55%), Gaps = 27/393 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + G+ R +G IVLPCGAGK++VG++ R+K S L + TN +V QW
Sbjct: 250 RNYQNEAADALVGDKRPGTGFGTIVLPCGAGKTIVGMNIMNRLKTSTLIITTNISAVHQW 309
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ DQI +T +SK V V TY ++ + ++ + R R
Sbjct: 310 IDELLDKTSLAPDQISEYTGESKT----IKPVTVATYQILTWRPEKDAPYPH-FQIFRER 364
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ ++GLTATLVRED + L+GPK Y+ W
Sbjct: 365 AWGLIIYDEVHMLPAPVFRVAAEL-QAVRRVGLTATLVREDGCEGHVFSLVGPKRYDVPW 423
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLI-RFH 263
+L G+IA +C EV + + EY +S+KK + NP K + LI RF
Sbjct: 424 KELEHSGWIATAECVEVRIDLPADTEIEY-AVADSRKKHRIASENPAKTPVVQELIKRFP 482
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E DKI++ L L E A L P+I G T ER +I F+ + + +SKV
Sbjct: 483 E----DKILIIGQYLDQLAELARLLNAPVITGKTPTAERDRIYADFRNGV-IQVLVVSKV 537
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ +ID+P+A++ IQ+S GSR++EAQRLGRILR K E + F++L++
Sbjct: 538 ANFAIDLPDASMAIQVSGTFGSRQEEAQRLGRILRPK------------ERTSRFFTLIT 585
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPD 416
+T E + + RQ+FL +QGYS+++I P D
Sbjct: 586 RNTVEEEFGSNRQKFLAEQGYSYRIIRYAEPDD 618
>gi|417932536|ref|ZP_12575874.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
gi|340774172|gb|EGR96659.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182B-JCVI]
Length = 553
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 218/382 (57%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + L L TN VS QW
Sbjct: 186 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTIVGATAMSLAHCTTLILVTNTVSARQWKE 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I + S S+++ R V + TY ++ + + +E R+W
Sbjct: 243 ELVHRTSLTPDEIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGTHPHLELFEARDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 296 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K R E L+ E+
Sbjct: 355 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNRVVEELV---ER 409
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG ++ + L E A +L+ P+I G+T+ R +I Q F+ R ++ + +SKV +
Sbjct: 410 HRGQPTLIIGQYVDQLEELAAELQCPIITGSTTPTRRQEIYQDFREGR-IDLLVVSKVAN 468
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR K L R FY++VS D
Sbjct: 469 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----------FYAVVSRD 517
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 518 TVDADFASHRQRFLAEQGYSYR 539
>gi|406575906|ref|ZP_11051590.1| helicase [Janibacter hoylei PVAS-1]
gi|404554681|gb|EKA60199.1| helicase [Janibacter hoylei PVAS-1]
Length = 545
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 214/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 183 RPYQQQAVDGFWDGG---SGVVVLPCGAGKTLVGAGAMAAAKATTLILVTNTVSARQWKQ 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE V + TY ++ K + +++ R+W
Sbjct: 240 ELLERTTLTEDEIGEYSGARKE----IRPVTIATYQVLTLKRKGAYPHLDLLD---ARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREADVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E + + L +P K L+ E+
Sbjct: 352 IEAQGYIAPADCVEVRVTLTDAERMAYATAEADDRYR-LASCSPVKLGVVRELV---ERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG+ ++ L L E + +L +I G T +R ++ F+ R + + +SKV +
Sbjct: 408 RGEPTLIIGQYLDQLHELSEQLDADLITGETPVKQRQELFADFREGRS-SLLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA+V IQ+S GSR++EAQRLGR+LR K ++ A FY++V+ DT
Sbjct: 467 SVDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPK----------EDGRTAHFYTVVTRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 517 VDAEFAAHRQRFLAEQGYAYRIL 539
>gi|145222289|ref|YP_001132967.1| type III restriction enzyme, res subunit [Mycobacterium gilvum
PYR-GCK]
gi|145214775|gb|ABP44179.1| type III restriction enzyme, res subunit [Mycobacterium gilvum
PYR-GCK]
Length = 549
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A R + L L TN V+ QW
Sbjct: 183 RDYQQMAADSFWDGG---SGVVVLPCGAGKTLVGAAAMARAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 240 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + L K + ++ H +
Sbjct: 352 IEAQGWIAPAECVEVRVTMTDNERMLYATAEPEERYK-LCATAHTKIAVVKSILDRHPNE 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E +L P+I G+T + ER ++ F+ ++ T+ +SKV +
Sbjct: 411 ---PTLVIGAYLDQLDELGTELNAPVIQGSTKNAEREELFDGFRRG-EIRTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYVI 538
>gi|315442723|ref|YP_004075602.1| DNA/RNA helicase [Mycobacterium gilvum Spyr1]
gi|315261026|gb|ADT97767.1| DNA/RNA helicase, superfamily II [Mycobacterium gilvum Spyr1]
Length = 549
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A R + L L TN V+ QW
Sbjct: 183 RDYQQMAADSFWDGG---SGVVVLPCGAGKTLVGAAAMARAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +++I ++ + KE V + TY ++ +R++ K +E +R+W
Sbjct: 240 ELIARTTLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + L K + ++ H +
Sbjct: 352 IEAQGWIAPAECVEVRVTMTDNERMLYATAEPEERYK-LCATAHTKIAVVKSILDRHPDE 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E +L P+I G+T + ER ++ F+ ++ T+ +SKV +
Sbjct: 411 ---PTLVIGAYLDQLDELGTELNAPVIQGSTKNAEREELFDGFRRG-EIRTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYVI 538
>gi|294996341|ref|ZP_06802032.1| DNA helicase ercc3 [Mycobacterium tuberculosis 210]
gi|297633378|ref|ZP_06951158.1| DNA helicase ercc3 [Mycobacterium tuberculosis KZN 4207]
gi|308371780|ref|ZP_07426215.2| hypothetical protein TMDG_02629 [Mycobacterium tuberculosis
SUMu004]
gi|383306761|ref|YP_005359572.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB327]
gi|385990323|ref|YP_005908621.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5180]
gi|386003879|ref|YP_005922158.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB423]
gi|308335490|gb|EFP24341.1| hypothetical protein TMDG_02629 [Mycobacterium tuberculosis
SUMu004]
gi|339297516|gb|AEJ49626.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5180]
gi|379027027|dbj|BAL64760.1| DNA helicase [Mycobacterium tuberculosis str. Erdman = ATCC 35801]
gi|380720714|gb|AFE15823.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB327]
gi|380724367|gb|AFE12162.1| DNA helicase ErcC3 [Mycobacterium tuberculosis RGTB423]
Length = 549
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 181 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 238 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 291 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 350 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 409 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 465 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 515 DSLDAEYAAHRQRFLAEQGYGYII 538
>gi|308397334|ref|ZP_07492493.2| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu012]
gi|308366928|gb|EFP55779.1| DNA helicase ercc3 [Mycobacterium tuberculosis SUMu012]
Length = 544
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 176 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 232
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 233 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 285
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 286 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 344
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 345 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 403
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 404 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 459
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 460 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 509
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 510 DSLDAEYAAHRQRFLAEQGYGYII 533
>gi|424946614|ref|ZP_18362310.1| DNA helicase [Mycobacterium tuberculosis NCGM2209]
gi|358231129|dbj|GAA44621.1| DNA helicase [Mycobacterium tuberculosis NCGM2209]
Length = 534
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 166 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 222
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 223 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 275
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 276 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 334
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 335 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 393
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 394 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 449
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 450 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 499
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 500 DSLDAEYAAHRQRFLAEQGYGYII 523
>gi|317129326|ref|YP_004095608.1| type III restriction protein res subunit [Bacillus cellulosilyticus
DSM 2522]
gi|315474274|gb|ADU30877.1| type III restriction protein res subunit [Bacillus cellulosilyticus
DSM 2522]
Length = 553
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 138/396 (34%), Positives = 213/396 (53%), Gaps = 24/396 (6%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73
L ++ H + RPYQ++++ G +G I+LPCG+GK++VG+ +IK+ L
Sbjct: 167 LAFSIESHVKLRPYQKEAVDSFINANGGVEGNGFIILPCGSGKTIVGLGVMDKIKEDTLI 226
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRS 131
L N S+ QW + +++Q QI +TS+ KE V +TTY M+ + +S
Sbjct: 227 LVPNDTSLQQWYNELLDKTSLQKSQIGLYTSEKKEV----KEVTITTYQMLTYHHSNNKS 282
Query: 132 EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDL 191
+ R WGL++ DEVH++PA +FR + S + +LGLTAT VRED++ +D+
Sbjct: 283 KGDFPHFSLFHQRSWGLVIYDEVHLLPAPLFR-ITSNLQGKRRLGLTATFVREDKKESDI 341
Query: 192 NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251
LIGPK YE L + G+IA C E P T++ + +Y + K+ Y
Sbjct: 342 YSLIGPKRYEVGIKALEENGWIAKPICMEYKIPFTEKQWEKYF----TLSKRERYRFASE 397
Query: 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKC 311
+ L R E+ II+ L L A +L+ P+I G T ER KI FK
Sbjct: 398 NEQKLSLLKRIVEKHHDVPIIIIGQYLDQLHRIARELQLPLITGETKKSERQKIYDDFKK 457
Query: 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371
++ T+ LS+V + ++D+P+A V IQIS GSR++EAQR+GR+LR K E
Sbjct: 458 G-NIQTLVLSRVANMAVDLPDAQVAIQISGTYGSRQEEAQRIGRLLRPKKSGEP------ 510
Query: 372 EEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
+FY+L++ TQE ++ RQ F+ +QGYS+K
Sbjct: 511 ----VYFYTLITPMTQEEEVASNRQLFMHEQGYSYK 542
>gi|237845623|ref|XP_002372109.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
gi|211969773|gb|EEB04969.1| TFIIH basal transcription factor complex helicase XPB subunit,
putative [Toxoplasma gondii ME49]
Length = 242
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 112/189 (59%), Positives = 142/189 (75%), Gaps = 9/189 (4%)
Query: 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 284
M+ EF+S YL+ + ++ L VMNPNKFR C+FLI++HEQ R DKIIVF+DN+FAL +Y
Sbjct: 1 MSAEFYSYYLRAQIGRR-LLLAVMNPNKFRICQFLIKYHEQ-RNDKIIVFSDNVFALKKY 58
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
A+++ KP +YG T ER KILQ F+ + +NTIF+SKV D S D+PEANV+IQIS+ G
Sbjct: 59 AIEMDKPFLYGETGQNERMKILQNFQYNPKVNTIFVSKVADTSFDLPEANVLIQISAQGG 118
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SRRQEAQRLGRILRAK D +NAFFYSLVS DT EM YS KRQ+FL++QGY
Sbjct: 119 SRRQEAQRLGRILRAKKNSGD-------GFNAFFYSLVSQDTVEMSYSRKRQRFLVNQGY 171
Query: 405 SFKVITSLP 413
++KV+ LP
Sbjct: 172 AYKVVNRLP 180
>gi|15840274|ref|NP_335311.1| ATP-dependent DNA helicase [Mycobacterium tuberculosis CDC1551]
gi|13880434|gb|AAK45125.1| ATP-dependent DNA helicase, putative [Mycobacterium tuberculosis
CDC1551]
Length = 542
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ + T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EXATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|261416532|ref|YP_003250215.1| type III restriction protein res subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|385791387|ref|YP_005822510.1| putative helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
gi|261372988|gb|ACX75733.1| type III restriction protein res subunit [Fibrobacter succinogenes
subsp. succinogenes S85]
gi|302326811|gb|ADL26012.1| putative helicase [Fibrobacter succinogenes subsp. succinogenes
S85]
Length = 591
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 144/405 (35%), Positives = 221/405 (54%), Gaps = 42/405 (10%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ + + +G + SG+IVLPCG+GK+++G++ ++ L L N S QW
Sbjct: 188 RDYQKDAAQVFYASGSEKGGSGVIVLPCGSGKTVIGLATMALVQTKTLILTPNISSSRQW 247
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV-----AFGG---KRSEESEK 136
+ + + DQ+ ++ + KE V V TY ++ A G K +E E
Sbjct: 248 IREICDKTNLTLDQVKEYSGEVKE----IGPVTVATYQILTQRKRAKKGDENKEGKEPEM 303
Query: 137 IIEEIR----------NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186
EE++ +WGL++ DEVH++PA +FR + + +LGLTATLVRED
Sbjct: 304 TEEEVKKELANFPLFSQEKWGLMIYDEVHLLPAPVFRLSTEMQATR-RLGLTATLVREDH 362
Query: 187 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246
+ T++ LIGPK ++ W L G+IA C E+ PM E +Y + K L
Sbjct: 363 KETEVFSLIGPKKFDIPWRILEAQGWIATADCNEIRIPMDPELKMKYALAP-VRDKITLA 421
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIV--FADNLFALTEYAMKLRKPMIYGATSHVERTK 304
NP K E L+++ + +I+ + D L AL+E L+ P+I G T + ER K
Sbjct: 422 STNPEKTDIVERLLKYFSKPDDRVLIIGQYIDQLEALSE---DLQIPLITGKTPNKEREK 478
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ AF+ N + +SKVG+ +ID+P+ANV+IQIS GSR++EAQRLGR+LR K
Sbjct: 479 LYGAFRSGAQKN-LMVSKVGNFAIDLPDANVLIQISGTFGSRQEEAQRLGRVLRPKSD-- 535
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
GG A FYS+V+ D++E ++ RQ FL +QGY++K+I
Sbjct: 536 ----GGA----AHFYSIVTQDSKEQEFAMNRQLFLTEQGYAYKII 572
>gi|320103370|ref|YP_004178961.1| type III restriction protein res subunit [Isosphaera pallida ATCC
43644]
gi|319750652|gb|ADV62412.1| type III restriction protein res subunit [Isosphaera pallida ATCC
43644]
Length = 568
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/385 (35%), Positives = 222/385 (57%), Gaps = 19/385 (4%)
Query: 27 RPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ G R SG++VLPCGAGK++VG++A ++K L L T+ SV+QW
Sbjct: 190 RDYQRMAVEAYHAGGDVRGGSGVVVLPCGAGKTIVGLAAMAAVQKHTLILTTSTTSVEQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + + + +T ++KE+ V + TY +V + KR E+ ++
Sbjct: 250 RRELLDKTDLDESLLGLYTGEAKEK--SIKPVTLATYQIVTYRPKRGEDFPHF-HLFQSM 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR + + ++ +LGLTATLVRED R D+ LIGPK ++ W
Sbjct: 307 DWGLIIYDEVHLLPAPVFR-ITADIQARRRLGLTATLVREDGREEDVFSLIGPKKFDVPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
L + G+IA +C E+ + + EY E + K + NP K L+ H
Sbjct: 366 RVLEQKGWIAQARCHEIRLSLPDDQKMEYALAE-LRDKFRIASENPAKEEIVAQLLE-HF 423
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ D++++ L L A + P+I G TS+ ER ++ Q + +L + LSKVG
Sbjct: 424 NEPDDRVLIIGQYLKQLRRIAQRFGLPLITGQTSNAERERLYQRLRNG-ELKRLVLSKVG 482
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+ANV+IQ+S GSR++EAQRLGRILR K + +A F+SLV+
Sbjct: 483 NFAIDLPDANVMIQVSGTFGSRQEEAQRLGRILRPKMNTD----------SAHFFSLVTR 532
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT+E+ ++ RQ FL +QGYS++++
Sbjct: 533 DTRELDFAHHRQLFLTEQGYSYEIL 557
>gi|422441473|ref|ZP_16518282.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
gi|422472803|ref|ZP_16549284.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|422573218|ref|ZP_16648783.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|313835461|gb|EFS73175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA2]
gi|314928522|gb|EFS92353.1| DEAD/DEAH box helicase [Propionibacterium acnes HL044PA1]
gi|314970456|gb|EFT14554.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA3]
Length = 549
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 218/384 (56%), Gaps = 29/384 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKIAAQSFWDGG---SGVVVLPCGAGKTIVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLTPDEIGEY-SGSRKQVR---PVTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWRE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K R L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMTCAMAEPDVRYRMAATL--PIKNRVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG ++ + L E A +L+ P+I G+T+ R + Q F+ R ++ + +SKV +
Sbjct: 409 HRGQPTLIIGQYVDQLEELATELKCPIITGSTTPTRRQETYQDFREGR-VDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR K L R FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----------FYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVI 409
T + +++ RQ+FL +QGYS+++I
Sbjct: 517 TVDADFASHRQRFLAEQGYSYRII 540
>gi|395203324|ref|ZP_10394558.1| DEAD/DEAH box helicase [Propionibacterium humerusii P08]
gi|328908278|gb|EGG28037.1| DEAD/DEAH box helicase [Propionibacterium humerusii P08]
Length = 580
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 136/384 (35%), Positives = 218/384 (56%), Gaps = 29/384 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 216 RPYQKIAAQSFWDGG---SGVVVLPCGAGKTIVGATAMSLARCTTLILVTNTVSARQWKE 272
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I + S S+++ R V + TY ++ + +E R+W
Sbjct: 273 ELVRRTSLTPDEIGEY-SGSRKQVR---PVTIATYQVIT---TKRHGVHPHLELFEARDW 325
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 326 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWRE 384
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K R L+ E+
Sbjct: 385 IEAQGWIAPADCVEVRVSLSESDRMTCAMAEPDVRYRMAATL--PIKNRVVRDLV---ER 439
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG ++ + L E A +L+ P+I G+T+ R + Q F+ R ++ + +SKV +
Sbjct: 440 HRGQPTLIIGQYVDQLEELATELKCPIITGSTTPTRRQETYQDFREGR-VDLLVVSKVAN 498
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR K L R FY++VS D
Sbjct: 499 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----------FYAVVSRD 547
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVI 409
T + +++ RQ+FL +QGYS+++I
Sbjct: 548 TVDADFASHRQRFLAEQGYSYRII 571
>gi|418046889|ref|ZP_12684977.1| type III restriction protein res subunit [Mycobacterium rhodesiae
JS60]
gi|353192559|gb|EHB58063.1| type III restriction protein res subunit [Mycobacterium rhodesiae
JS60]
Length = 549
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 183 RDYQQMAADSFWDGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQWKR 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ +R++ + +E +R+W
Sbjct: 240 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYRHLELFDSRDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W D
Sbjct: 293 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV MT Y E ++ + + +K + ++ H
Sbjct: 352 IEAQGWIAPAECIEVRVTMTDNERMLYAVAEPEERYRLCSTAH-SKIAVVKSILAKHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ +V L L E +L P+I G+T + ER + AF+ S ++ T+ +SKV +
Sbjct: 409 -GEPTLVIGAYLDQLDELGAELDAPVIQGSTKNAEREALFDAFR-SGEVKTLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS D+
Sbjct: 467 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GG----GAVFYSVVSRDS 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY + +
Sbjct: 517 LDAEYAAHRQRFLAEQGYGYII 538
>gi|86743075|ref|YP_483475.1| helicase-like protein [Frankia sp. CcI3]
gi|86569937|gb|ABD13746.1| helicase-like [Frankia sp. CcI3]
Length = 545
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/385 (35%), Positives = 222/385 (57%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ +++ + G SG++VLP GAGK++VG +A + + L L TN V+ QW
Sbjct: 183 RDYQKGAVAGFWEGG---SGVVVLPAGAGKTIVGAAAMAQAGATTLILVTNTVAGRQWRH 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ +R E + E R+W
Sbjct: 240 ELLRRTSLTEEEIGEYSGERKE----IRPVTIATYQVMT--ARRKGEYLHL-ELFGARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED R D+ LIGPK Y+A W +
Sbjct: 293 GLIVYDEVHLLPAPVFRMTADI-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWRE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA QC EV +T++ Y E ++ + + +K E L+R H
Sbjct: 352 IEAQGWIAPAQCTEVRVTLTEDERMAYAVAEPEERYR-MCATARSKRAVVERLVRQHSD- 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
D+++V L L E L P+I G+T + ER ++ +AF+ ++ T+ +SKV +
Sbjct: 410 --DRVLVIGAYLDQLDELGELLDAPVIQGSTRNRERERLFEAFRTG-EITTLVVSKVANV 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G+ A FY++V+ DT
Sbjct: 467 SIDLPEAGVAVQVSGTFGSRQEEAQRLGRVLRPK-------ADGR---TAHFYTVVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY++ ++ +
Sbjct: 517 LDQEYAAHRQRFLAEQGYAYTIVDA 541
>gi|350569020|ref|ZP_08937418.1| DNA or RNA helicase of superfamily II [Propionibacterium avidum
ATCC 25577]
gi|348661263|gb|EGY77959.1| DNA or RNA helicase of superfamily II [Propionibacterium avidum
ATCC 25577]
Length = 552
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 217/384 (56%), Gaps = 29/384 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQRMAAESFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I + S S+++ R V + TY ++ K + ++ E R+W
Sbjct: 242 ELVRRTSLTPDEIGEY-SGSRKQVR---PVTIATYQVITTKRKGVHPNLELFE---ARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV + + + + + + + + + A + P K R L+ H
Sbjct: 354 IEAQGWIAPADCVEVRVSLPESDRMTCAMAEPDVRYRMAATL--PIKNRVVADLVARH-- 409
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +LR P+I G+T+ +R KI Q F+ + + +SKV +
Sbjct: 410 -RGQPTLVIGQYVDQLEELAEELRCPIITGSTTPTKRQKIYQDFRGGV-TDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR K L R FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRPKDGLVAR-----------FYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVI 409
T + +++ RQ+FL +QGYS++++
Sbjct: 517 TVDADFASHRQRFLAEQGYSYRIV 540
>gi|425734424|ref|ZP_18852743.1| DNA helicase, superfamily II [Brevibacterium casei S18]
gi|425481691|gb|EKU48850.1| DNA helicase, superfamily II [Brevibacterium casei S18]
Length = 544
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 217/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ +++ + SG++VLPCGAGK++VGV+ R++ + L L TN+VS QW
Sbjct: 186 RDYQREAIDQSLAG---ESGVVVLPCGAGKTVVGVATMSRVQTTTLILVTNSVSAKQWKD 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE + + TY ++ R + S +E + ++W
Sbjct: 243 EILARTTLTEDEIGEYSGSVKE----IRPITIATYQVLT---TRRKGSYLHLELLDAKDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR SL ++ +LGLTATLVRED R ++ LIGPK YE W +
Sbjct: 296 GLVIYDEVHLLPAPIFRLTASL-QARRRLGLTATLVREDGREDEVFSLIGPKQYEVPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L + GFIA C EV + + Y + + + + L + K L+ H
Sbjct: 355 LERLGFIATAACHEVRVRLDGGTRTAYARADGEDRYR-LAATSDAKLPIVRSLVAEHPDA 413
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+I+V L L E +L P++ G T +R ++ + F+ S + + +SKV +
Sbjct: 414 ---QILVIGQYLDQLEEIGAELDAPVLTGQTPESQRQQLFRDFR-SGAIRVLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+P A+V IQ+S GSR++EAQRLGRILR K ED AG +A FY++V+ DT
Sbjct: 470 SVDLPAASVAIQVSGAFGSRQEEAQRLGRILRPK---ED--AG-----SATFYTVVAADT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ ++ +R++FL +QGYS+ +
Sbjct: 520 VDEHFAAQRRRFLTEQGYSYDI 541
>gi|254414041|ref|ZP_05027809.1| Type III restriction enzyme, res subunit family [Coleofasciculus
chthonoplastes PCC 7420]
gi|196179177|gb|EDX74173.1| Type III restriction enzyme, res subunit family [Coleofasciculus
chthonoplastes PCC 7420]
Length = 604
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/389 (35%), Positives = 216/389 (55%), Gaps = 29/389 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
Q RPYQ+++ + +G + SGII LPCGAGK++VG++A + + L L T+ SV
Sbjct: 190 QVRPYQQQAAEAFYQSGYVQGGSGIICLPCGAGKTIVGMAAMAAVGEHTLILTTSLTSVR 249
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR 142
QW + + + D I ++ + K A V ++TY ++ + ++ +
Sbjct: 250 QWRRELLDKTDLPPDAIAEYSGEVK----STAPVTLSTYQILTYRPNQAADFPHF-SLFN 304
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
R WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R D+ LIGPK Y+
Sbjct: 305 ARSWGLIIYDEVHLLPAPVFRITAEL-QARRRLGLTATLIREDGREGDVFALIGPKRYDV 363
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM--NPNKFRACEFLI 260
W +L GFIA C E+ P E + + + ++Q V NP K + LI
Sbjct: 364 PWRELETQGFIATACCTEIRIPQDSE---QQMHYAVTPRRQQFRVAAENPRKVEVVQHLI 420
Query: 261 RFHEQQRGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
QQ D KI++ + L L A P+I G+TS +R ++ F+ +L +
Sbjct: 421 ----QQAADHKILIIGEYLSQLKHLAKVTAFPLIVGSTSQTKREELYSLFRRG-ELKGLV 475
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
LS+VG+ ++D+P+A+V+IQ+S GSR++EAQRLGRILR K + R+A FY
Sbjct: 476 LSRVGNFALDLPDADVLIQVSGKYGSRQEEAQRLGRILRPKN--DGRVAR--------FY 525
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
+LVS T E ++ RQ FL +QGY +++
Sbjct: 526 TLVSLRTCEEDFARHRQLFLTEQGYGYEI 554
>gi|407276999|ref|ZP_11105469.1| DNA repair helicase [Rhodococcus sp. P14]
Length = 552
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 137/382 (35%), Positives = 215/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 185 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ + KE V + TY ++ ++S+ + +E +R+W
Sbjct: 242 ELIARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEYRNLELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 295 GLMIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ + L K + ++ H
Sbjct: 354 IEAQGWIAPAECVEVRVTLTDAERMAYAVAEPEERYK-LCSTAHTKIAVVKSILARH--- 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R ++ L L E L P+I G+T + ER ++ F+ +L + +SKV +
Sbjct: 410 RDSPTLIIGAYLDQLDELGAALGAPVIKGSTRNKEREELFDRFRAG-ELKVLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 469 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 519 LDAEYAAHRQRFLAEQGYAYRI 540
>gi|339501119|ref|YP_004699154.1| type III restriction protein res subunit [Spirochaeta caldaria DSM
7334]
gi|338835468|gb|AEJ20646.1| type III restriction protein res subunit [Spirochaeta caldaria DSM
7334]
Length = 600
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 143/390 (36%), Positives = 215/390 (55%), Gaps = 26/390 (6%)
Query: 21 KPHAQPRPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78
KP A PR YQ ++ + G+G SG ++VLPCG+GK++VG++ +K + L L TN
Sbjct: 226 KPFA-PRDYQVEAARSVVGDGGPGSGFGVVVLPCGSGKTVVGMTVMTMLKTNTLILTTNV 284
Query: 79 VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKII 138
+V QW + + + +QI +T D K A V V TY ++ + + +
Sbjct: 285 AAVHQWIDELLDKTDLTAEQIAEYTGDEK----SVAPVTVATYQILTWRPNKDADFPHF- 339
Query: 139 EEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
+ R R WGL++ DEVH++PA +FR L ++ +LGLTATLVRED + L+GPK
Sbjct: 340 KLFRERAWGLIIYDEVHMLPAPVFRVTAEL-QAVRRLGLTATLVREDGAEDAVFSLVGPK 398
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258
Y+ W DL G+IA C E+ + ++ Y N + K + NP K +
Sbjct: 399 RYDVPWKDLEAKGWIAEALCTEIRLDLPEQLKIPY-AVANQRAKYRIASENPLKIAVVQQ 457
Query: 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTI 318
LI H + D+I+V L L+E A L+ P+I G T H ER I FK +L I
Sbjct: 458 LIENHPE---DRILVIGQYLSQLSELARILKVPLITGQTPHAEREVIYHRFKQG-ELRLI 513
Query: 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 378
+SKV + +ID+P+A++ IQ+S GSR++EAQRLGRILR K + N++F
Sbjct: 514 VVSKVANFAIDLPDASMAIQVSGSFGSRQEEAQRLGRILRPKNR------------NSYF 561
Query: 379 YSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
Y++VS T E ++ RQ+FL +QGY + +
Sbjct: 562 YTIVSRFTVEEEFAANRQKFLAEQGYKYTI 591
>gi|404445592|ref|ZP_11010728.1| type III restriction enzyme, res subunit [Mycobacterium vaccae ATCC
25954]
gi|403651886|gb|EJZ06978.1| type III restriction enzyme, res subunit [Mycobacterium vaccae ATCC
25954]
Length = 542
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 215/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ+ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQQMAADSFWDGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNTVAGRQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I ++ + KE V + TY ++ +R++ K +E +R
Sbjct: 231 KRELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVIT---RRTKGEYKHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + L K + ++ H
Sbjct: 343 KDIEAQGWIAPAECIEVRVTMTDNERMLYATAEPEERYK-LCATAHTKMAVVKSILERHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +V L L E +L P+I G+T + ER + F+ ++ T+ +SKV
Sbjct: 402 DE---PTLVIGAYLDQLDELGAELDAPVIQGSTKNAEREALFDGFRRG-EIRTLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG A FYS+VS
Sbjct: 458 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKAD------GG----GAVFYSVVSR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY++ +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYAYVI 531
>gi|335041027|ref|ZP_08534144.1| type III restriction protein res subunit [Caldalkalibacillus
thermarum TA2.A1]
gi|334179004|gb|EGL81652.1| type III restriction protein res subunit [Caldalkalibacillus
thermarum TA2.A1]
Length = 569
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/393 (34%), Positives = 212/393 (53%), Gaps = 29/393 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82
Q R YQ +++ G A G ++VLPCGAGK+++G++ R + + L L +N SV
Sbjct: 196 QLRDYQREAVDAFLGPDSAYGGQGVLVLPCGAGKTIIGIAVMVRQQCATLILTSNETSVR 255
Query: 83 QWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI--IEE 140
QW + +T+ ++++ +T+ +K V + TY M+ F R +S +
Sbjct: 256 QWKREILEKTTLTENEVGEYTTQTKL----IKPVTIATYQMLTF---RPSQSAAFGHMHL 308
Query: 141 IRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLY 200
+ R WGL++ DEVH++PA ++R SL +S +LGLTATLVRED R D+ LIGPK Y
Sbjct: 309 FKRRRWGLIIYDEVHLLPAPVYRATASL-QSTRRLGLTATLVREDGREEDVFSLIGPKRY 367
Query: 201 EANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY-LKKENSKKKQALYVMNPNKFRACEFL 259
+ W +L G IA C + + Y L E K + A NP K + L
Sbjct: 368 DLPWKELEHKGHIAEAICTAIRVDLDPALKRTYHLAPEKDKMRIAQ--ENPQKLAVVKEL 425
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
+ H R D++++ + + M + P+I G T H ER ++ F+ ++ +
Sbjct: 426 LNKH---REDQVLIIGQYVRQMEALGMLFKVPVITGKTKHGERDRLYAQFRTG-EIRVLA 481
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+SKV + +ID+P A V IQ+S GSR++EAQRLGRILR K E A+FY
Sbjct: 482 VSKVANFAIDLPAAAVAIQVSGTYGSRQEEAQRLGRILRPK----------PGENKAYFY 531
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSL 412
+V+ D+++ Y+ KRQ FL++QGY + V+ L
Sbjct: 532 HIVTKDSKDQDYALKRQLFLVEQGYRYHVVDYL 564
>gi|31792049|ref|NP_854542.1| DNA helicase [Mycobacterium bovis AF2122/97]
gi|121636784|ref|YP_977007.1| DNA helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224989255|ref|YP_002643942.1| DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|378770618|ref|YP_005170351.1| putative DNA helicase [Mycobacterium bovis BCG str. Mexico]
gi|449062894|ref|YP_007429977.1| DNA helicase [Mycobacterium bovis BCG str. Korea 1168P]
gi|31617636|emb|CAD93746.1| PROBABLE DNA HELICASE [Mycobacterium bovis AF2122/97]
gi|121492431|emb|CAL70899.1| Probable dna helicase [Mycobacterium bovis BCG str. Pasteur 1173P2]
gi|224772368|dbj|BAH25174.1| putative DNA helicase [Mycobacterium bovis BCG str. Tokyo 172]
gi|341600800|emb|CCC63471.1| probable DNA helicase [Mycobacterium bovis BCG str. Moreau RDJ]
gi|356592939|gb|AET18168.1| Putative DNA helicase [Mycobacterium bovis BCG str. Mexico]
gi|449031402|gb|AGE66829.1| DNA helicase [Mycobacterium bovis BCG str. Korea 1168P]
Length = 542
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPATISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|340625875|ref|YP_004744327.1| putative DNA helicase ERCC3 [Mycobacterium canettii CIPT 140010059]
gi|433625946|ref|YP_007259575.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140060008]
gi|340004065|emb|CCC43201.1| putative DNA helicase ERCC3 [Mycobacterium canettii CIPT 140010059]
gi|432153552|emb|CCK50775.1| Putative ATP-dependent DNA helicase ErcC3 [Mycobacterium canettii
CIPT 140060008]
Length = 542
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ + +I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTEIEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELDAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|384106694|ref|ZP_10007601.1| DNA repair helicase [Rhodococcus imtechensis RKJ300]
gi|383834030|gb|EID73480.1| DNA repair helicase [Rhodococcus imtechensis RKJ300]
Length = 559
Score = 222 bits (566), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 136/382 (35%), Positives = 213/382 (55%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 192 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 248
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ +R++ K +E +R+W
Sbjct: 249 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFDSRDW 301
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 302 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 360
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ Y + + E+
Sbjct: 361 IEAQGWIAPADCVEVRVTLTDAERMSYAVAEPDER----YKLCSTAHTKIAVVKSILERH 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ L L E L P+I G+T + ER ++ F+ ++ + +SKV +
Sbjct: 417 TDAPTLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQKLVVSKVANF 475
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 476 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 525
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 526 LDAEYAAHRQRFLAEQGYAYRI 547
>gi|67920111|ref|ZP_00513631.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
gi|67857595|gb|EAM52834.1| Helicase, C-terminal:Type III restriction enzyme, res
subunit:DEAD/DEAH box helicase, N-terminal [Crocosphaera
watsonii WH 8501]
Length = 555
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/384 (34%), Positives = 219/384 (57%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQ ++ + +GR + SG+I LPCGAGK++VG++A +++++ L L T+ SV QW
Sbjct: 192 RPYQLEAADVFYQSGRVQGGSGVICLPCGAGKTIVGMAAMAQVQENTLILTTSLTSVRQW 251
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + ++ I ++ + K + + TY ++ + + + + R
Sbjct: 252 RRELLDKTELPEEVIAEYSGEMK----ATGPITLATYQILTYRPHKDADFPHF-SLFQAR 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R +D+ LIGPK Y+ W
Sbjct: 307 SWGLIIYDEVHLLPAPVFRITAEL-QARRRLGLTATLIREDGRESDVFALIGPKRYDVPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L GFIA C E+ P E E ++ + ++Q V N R E + +
Sbjct: 366 RELESQGFIAQAICREIRVPQDSE---EQMRYAVAPRRQQFRVAAENP-RKLEVVRQLLI 421
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ G KI+V + + L A + P+I G T+ +R + Q F+ S +++ + LS+VG
Sbjct: 422 DEIGHKILVIGEYIEQLRTLAELTKFPLITGKTTQKQREVLYQKFR-SGEIDGLVLSRVG 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A+V+IQ+S GSR++EAQRLGRILR K + G+ A FY+LVS
Sbjct: 481 NFALDLPDADVLIQVSGKYGSRQEEAQRLGRILRPK-------SDGR---TARFYTLVSE 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ FL +QGY +++
Sbjct: 531 RTCEEDFARHRQLFLTEQGYGYQI 554
>gi|326332145|ref|ZP_08198429.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
Broad-1]
gi|325950116|gb|EGD42172.1| putative ATP-dependent DNA helicase [Nocardioidaceae bacterium
Broad-1]
Length = 549
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 137/383 (35%), Positives = 212/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ ++ + G SG++VLPCGAGK+LVG +A + + L L TN VS QW
Sbjct: 183 RPYQSEAAESFWHGG---SGVVVLPCGAGKTLVGAAAMAHAQATTLILVTNTVSARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I ++ KE R V + TY ++ R + + +E + R+W
Sbjct: 240 ELVRRTSLTSDEIGEYSGSVKE-IR---PVTIATYQVLT---ARRKGAYPHLELLDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + + Y E ++ + + +K + ++ H +
Sbjct: 352 IEAQGWIAPADCVEVRVTLPTDERLVYATAEPDERYRIASCTH-HKIDVVKEIVASHADK 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+V L L E A L P+I G TS ER ++ AF+ S +++ + +SKV +
Sbjct: 411 ---PTLVIGQYLEQLDEIAASLDAPVIEGKTSVKERQRLFDAFR-SGEIDLLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A V IQ+S GSR++EAQRLGR+LR G A FY++VS DT
Sbjct: 467 SIDLPSAEVAIQVSGAYGSRQEEAQRLGRLLRP----------GDGNKTAHFYTIVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 517 VDADFAQNRQRFLAEQGYAYRIV 539
>gi|410865494|ref|YP_006980105.1| DNA or RNA helicase of superfamily II [Propionibacterium
acidipropionici ATCC 4875]
gi|410822135|gb|AFV88750.1| DNA or RNA helicase of superfamily II [Propionibacterium
acidipropionici ATCC 4875]
Length = 551
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/385 (36%), Positives = 211/385 (54%), Gaps = 31/385 (8%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ + + G SG++VLPCGAGK+LVG +A + + L L TN VS QW
Sbjct: 185 RPYQRVAAESFWDGG---SGVVVLPCGAGKTLVGATAMSLAQCTTLILVTNTVSARQWKD 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+I ++ KE V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLTADEIGEYSGSRKE----VRPVTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEEDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWC-PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIR-FHE 264
+ G+IA C EV P E + L + + + + A + + N ++R E
Sbjct: 354 IEAQGWIAPADCVEVRVNPTEDERMACALAEPDVRYRMASTLASKNA------VVRDLVE 407
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ RG +V + L E A +L +I GAT+ + R KI Q F+ ++N + +SKV
Sbjct: 408 RHRGQPTLVIGQYVDQLEELADELGCEIITGATTSLRRQKIYQQFRDG-EINLLVVSKVA 466
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+P A V IQ+S GSR++EAQRLGR+LR K L R FY++VS
Sbjct: 467 NFSIDLPSAEVAIQVSGSFGSRQEEAQRLGRLLRPKHGLVAR-----------FYAVVSR 515
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
DT + ++ RQ+FL +QGYS++++
Sbjct: 516 DTVDADFAAHRQRFLAEQGYSYRIV 540
>gi|383806633|ref|ZP_09962195.1| DNA or RNA helicase of superfamily II [Candidatus Aquiluna sp.
IMCC13023]
gi|383299803|gb|EIC92416.1| DNA or RNA helicase of superfamily II [Candidatus Aquiluna sp.
IMCC13023]
Length = 542
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 215/383 (56%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ K G SG++VLPCGAGK++VG + +K + L L TN V+ QW
Sbjct: 181 RGYQREAADKFEIGG---SGVVVLPCGAGKTMVGAAIMADVKANTLILVTNTVAARQWRD 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D+ I ++ SK A V + TY ++ KR E + + R+W
Sbjct: 238 ELLEKTSLTDEDIAEYSGSSKNL----APVTIATYQILTT--KRKNEFTHLAL-LNARDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W D
Sbjct: 291 GLIIYDEVHLLPAPIFKMTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKD 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + E EY + + + + E + + ++
Sbjct: 350 IEAQGYIAPANCFEVRVSLPDEARMEYAISDQESR----FRIASTATAKLEIMRKILKKH 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G+ ++ L + E A L P + G T R ++ ++F+ +++T+ +SKV +
Sbjct: 406 KGEPTLIIGQYLSQIAEVAEGLGVPKLTGETPVDVREELFRSFRNG-EISTLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA+V IQIS GSR++EAQRLGR+LR K ++ +A FY++V+ DT
Sbjct: 465 SVDLPEASVAIQISGAFGSRQEEAQRLGRLLRPK----------QDGRSAAFYTIVAADT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
E ++ RQ+FL +QGYS+++I
Sbjct: 515 VEQDFAQNRQRFLAEQGYSYEII 537
>gi|403508838|ref|YP_006640476.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
gi|402798567|gb|AFR05977.1| helicase conserved C-terminal domain protein [Nocardiopsis alba
ATCC BAA-2165]
Length = 545
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 139/382 (36%), Positives = 211/382 (55%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ G SG++VLPCGAGK++VG +A + L L TN VSV QW
Sbjct: 178 RGYQREAAESFHAGG---SGVVVLPCGAGKTIVGAAAMAMTGATTLILVTNTVSVHQWKT 234
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++A R + +E ++W
Sbjct: 235 ELLRRTSLTEDEIGEYSGTRKE----IRPVTIATYQVMA---ARRKGVYTHLELFDAKDW 287
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 288 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 346
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T+ Y E + + E + R E+Q
Sbjct: 347 MENQGWIAPADCVEVRVDLTESERLAYATAEPEDRYRFCASSETKTSVVREIVERHSEEQ 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++V + L E +L P+I G T + ER ++ AF+ S +L T+ +SKV +
Sbjct: 407 ----VLVIGSYIDQLDELGERLGAPVIKGETRNKERERLFDAFR-SGELRTLVVSKVANF 461
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G+ A FY++V+ DT
Sbjct: 462 SIDLPEAGVAVQVSGSFGSRQEEAQRLGRVLRPK-------ADGR---TARFYAVVARDT 511
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 512 LDQDYAAHRQRFLAEQGYAYRI 533
>gi|374606946|ref|ZP_09679760.1| type III restriction protein res subunit [Paenibacillus
dendritiformis C454]
gi|374387451|gb|EHQ58959.1| type III restriction protein res subunit [Paenibacillus
dendritiformis C454]
Length = 561
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 215/384 (55%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQ+ +++ G+G A G+IVLPCGAGK++VG++A ++ L L +NA SV QW
Sbjct: 180 RPYQQDAVAAFIGSGTRAAGDGVIVLPCGAGKTIVGLAAMSALQSETLILTSNATSVKQW 239
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +T++ + + +T K+ V ++TY ++ + ++ E + R
Sbjct: 240 KEELLKRTTLKSEHVGEYTGADKQ----VRPVTISTYQIMTYRQQKDGEWSH-MRLFHER 294
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L + +LGLTATLVRED D+ LIGPK +E W
Sbjct: 295 DWGLIIYDEVHLLPAPVFRTTADLQATR-RLGLTATLVREDGCERDVFSLIGPKRFELPW 353
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
L + G+IA V C EV P+ Y ++ +++ + N K A LI H
Sbjct: 354 RQLEEAGWIAQVTCTEVRVPLCAATRIAY-QQTGLRERARIAAENGAKIPAVRQLIARHP 412
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G +V L L A L+ P++ G T ER ++ +AFK +L + +SKV
Sbjct: 413 ---GAPTLVIGQYLSQLDALAAALQAPVLTGQTPQAERQRLYEAFKQG-ELPVLIVSKVA 468
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A V IQ+S GSR++EAQRLGR+LR K K+ A+FY++VS
Sbjct: 469 NFAVDLPDATVAIQVSGSYGSRQEEAQRLGRLLRPK----------KDGRMAYFYTVVSE 518
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T+E Y+ KRQ FL++QGY + +
Sbjct: 519 ATKERDYALKRQLFLVEQGYRYLI 542
>gi|309812293|ref|ZP_07706048.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
gi|308433598|gb|EFP57475.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
Length = 543
Score = 221 bits (564), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 140/388 (36%), Positives = 212/388 (54%), Gaps = 36/388 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ + G SG++VLPCGAGK+LVG A + K + L L TN VS QW
Sbjct: 182 RPYQRQAVDGFWDGG---SGVVVLPCGAGKTLVGAGAMAKAKATTLILVTNTVSARQWRD 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +D+I ++ KE V + TY ++ K +E + R+W
Sbjct: 239 ELLKRTTLTEDEIGEYSGARKE----IRPVTIATYQVLTLKRKGVYPH---LELLDARDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 292 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDNREDDVFSLIGPKRYDAPWKD 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC-----EFLIR 261
+ G+IA C EV ++ Y E ++ +F +C + R
Sbjct: 351 IESQGYIAPADCVEVRVGLSDSDRMAYATSEPDER---------YRFASCATVKDPVVER 401
Query: 262 FHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321
+ G+ +V L L A +L +I G TS R K+ Q F+ ++ + +S
Sbjct: 402 IVAKHDGEPTLVIGQYLDQLETVAGRLNADLITGETSVAVRQKLFQQFRDG-EITKLVVS 460
Query: 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSL 381
KV + SID+PEA+V +QIS GSR++EAQRLGR+LR K A G+ A FYS+
Sbjct: 461 KVANFSIDLPEASVAVQISGTFGSRQEEAQRLGRVLRPK-------ADGR---TAHFYSI 510
Query: 382 VSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
V+ DT + ++ RQ+FL +QGY+++++
Sbjct: 511 VTRDTVDADFAAHRQRFLAEQGYAYRIV 538
>gi|416374985|ref|ZP_11683267.1| DNA repair helicase [Crocosphaera watsonii WH 0003]
gi|357266616|gb|EHJ15220.1| DNA repair helicase [Crocosphaera watsonii WH 0003]
Length = 555
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 131/384 (34%), Positives = 219/384 (57%), Gaps = 23/384 (5%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQ ++ + +GR + SG+I LPCGAGK++VG++A +++++ L L T+ SV QW
Sbjct: 192 RPYQLEAADVFYQSGRVQGGSGVICLPCGAGKTIVGMAAMAQVQENTLILTTSLTSVRQW 251
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + ++ I ++ + K + + TY ++ + + + + R
Sbjct: 252 RRELLDKTELPEEVIAEYSGEMK----ATGPITLATYQILTYRPHKDADFPHF-SLFQAR 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATL+RED R +D+ LIGPK Y+ W
Sbjct: 307 SWGLIIYDEVHLLPAPVFRITAEL-QARRRLGLTATLIREDGRESDVFALIGPKRYDVPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L GFIA C E+ P E E ++ + ++Q V + N R E + +
Sbjct: 366 RELESQGFIAQAICREIRVPQDSE---EQMRYAVAPRRQQFRVASENP-RKLEVVRQLLI 421
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ G KI+V + + L A + P+I G T+ +R + Q F+ +++ + LS+VG
Sbjct: 422 DEIGHKILVIGEYIEQLKTLAELTKFPLITGKTTQKQREVLYQKFRDG-EIDGLVLSRVG 480
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ ++D+P+A+V+IQ+S GSR++EAQRLGRILR K + G+ A FY+LVS
Sbjct: 481 NFALDLPDADVLIQVSGKYGSRQEEAQRLGRILRPK-------SDGR---TARFYTLVSE 530
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ FL +QGY +++
Sbjct: 531 RTCEEDFARHRQLFLTEQGYGYQI 554
>gi|289442270|ref|ZP_06432014.1| DNA helicase ercc3 [Mycobacterium tuberculosis T46]
gi|289415189|gb|EFD12429.1| DNA helicase ercc3 [Mycobacterium tuberculosis T46]
Length = 542
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ + ++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RHTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|88855709|ref|ZP_01130372.1| DNA repair helicase [marine actinobacterium PHSC20C1]
gi|88815033|gb|EAR24892.1| DNA repair helicase [marine actinobacterium PHSC20C1]
Length = 548
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 132/383 (34%), Positives = 214/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ ++ F +G SG++VLPCGAGK+LVG+ A + K + L L TN VS QW
Sbjct: 186 REYQQHAIDNFFHHG---SGVVVLPCGAGKTLVGLGAMAQSKTTTLILVTNTVSARQWRA 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++++ ++ KE V + TY ++ K +++ + +W
Sbjct: 243 EILKRTTLTEEEVGEYSGQVKEIL----PVTIATYQILTAKRKGEYAHLALLDAL---DW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 296 GLVIYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ C EV + + EY + ++ + L P K + L+ E+
Sbjct: 355 IEAQGFISPASCFEVRVDLPENQRLEYAASADDERFR-LAATAPAKTEVVKALV---EKH 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++I+V L + + A +L P + GA+ ER ++ Q F+ + +SKV +
Sbjct: 411 AGERILVIGQYLDQIDDLAEQLDAPKLTGASPVAERERLYQEFREGI-TKVLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA V IQ+S GSR++EAQRLGR+LR K + A FY+LV+ DT
Sbjct: 470 SVDLPEATVAIQVSGSFGSRQEEAQRLGRLLRPK----------ESGLPANFYTLVARDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGYS+ ++
Sbjct: 520 VDQDFAQNRQRFLAEQGYSYTIL 542
>gi|295696317|ref|YP_003589555.1| type III restriction protein res subunit [Kyrpidia tusciae DSM
2912]
gi|295411919|gb|ADG06411.1| type III restriction protein res subunit [Kyrpidia tusciae DSM
2912]
Length = 553
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 135/397 (34%), Positives = 214/397 (53%), Gaps = 25/397 (6%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
L++ LK RPYQE+++ F GR SG++VLPCG+GK++VG++ R ++ L L
Sbjct: 166 LDVALKGTVILRPYQEEAVQAFFDEGRHGGSGVVVLPCGSGKTIVGLAVMARYRRQTLVL 225
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
+ + QW + + I D I + D R V ++TY ++ + R
Sbjct: 226 TSTTTAAYQWKREIEDKCEIAPDSIGVYAGDE----RVIKPVTISTYALMTWKNPRGAMP 281
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK-LGLTATLVREDERITDLNF 193
+ E+ WGL++ DEV +VPA +FR S +C+ LGLTATLVRED R T++
Sbjct: 282 H--LRELARHPWGLVIYDEVQLVPAPIFR--FSAGIQNCRRLGLTATLVREDGRETEVFS 337
Query: 194 LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253
LIGPK ++ W + + G+IA +C E+ P+ Y + E S+++ + NP K
Sbjct: 338 LIGPKCFDLPWRTVEEEGWIARAECYELRVPLDPAAEEAYRQAE-SRQRWRIAATNPRKV 396
Query: 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
L+ H RG ++V L L E A +L P I G T R + AF+
Sbjct: 397 EVAAELVARH---RGTPVLVIGHYLDQLRELAHRLGAPDITGDTPERVRRETYDAFRRG- 452
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
++ + LS+V + ++D+P+A V +++S + GSR++EAQRLGR+LR K K+
Sbjct: 453 EIPVLCLSRVANTAVDLPDARVAVELSGNFGSRQEEAQRLGRLLRLK----------KDG 502
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y LV+ T+E+ + +RQQFL +QGY +++ T
Sbjct: 503 GGARLYMLVTEGTEEVETAVRRQQFLAEQGYEYRIFT 539
>gi|289749381|ref|ZP_06508759.1| DNA helicase ercc3 [Mycobacterium tuberculosis T92]
gi|289689968|gb|EFD57397.1| DNA helicase ercc3 [Mycobacterium tuberculosis T92]
Length = 531
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ + ++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RHTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|452959547|gb|EME64884.1| DNA repair helicase [Rhodococcus ruber BKS 20-38]
Length = 552
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 213/382 (55%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 185 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S+ + +E +R+W
Sbjct: 242 ELIARTSLTEEEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEYRNLELFDSRDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 295 GLMIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y E ++ Y + + ++
Sbjct: 354 IEAQGWIAPAECVEVRVTLTDAERMAYAVAEPEER----YKLCSTAHTKIAVVKSILDRH 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R ++ L L E L P+I G+T + ER ++ F+ +L + +SKV +
Sbjct: 410 RDSPTLIIGAYLDQLDELGEALDAPVIKGSTRNKEREELFDRFRAG-ELKVLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 469 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 518
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 519 LDAEYAAHRQRFLAEQGYAYRI 540
>gi|50955355|ref|YP_062643.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
gi|50951837|gb|AAT89538.1| DNA repair helicase [Leifsonia xyli subsp. xyli str. CTCB07]
Length = 546
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 209/383 (54%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ K++ F G SG++VLPCGAGK+LV A K + L L TN VS QW
Sbjct: 183 RDYQRKAIGNFFDGG---SGVVVLPCGAGKTLVSAGAMATAKTTTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ KE V +TTY ++ K +++ + +W
Sbjct: 240 ELLKRTTLTAEEIGEYSGQVKE----VKPVTITTYQILTAKRKGEYAHLALLDAL---DW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 293 GLVVYDEVHLLPAPVFKLTAEL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ C EV + Y + ++ + L P K E + R E+
Sbjct: 352 IEAQGFISPAACYEVRIDLPPGERLSYAAAADDERYR-LAATAPAK---QEVVRRLVERH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++I+V L + E A L P + GAT+ ER ++ Q F+ + +SKV +
Sbjct: 408 AGERILVIGQYLDQIDELAEALGAPQLTGATAVEERERLYQEFREG-TTPVLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+PEA V IQ+S GSR++EAQRLGR+LR K + +A FY+LV+ DT
Sbjct: 467 SVDLPEATVAIQVSGSYGSRQEEAQRLGRLLRPK----------ESGLSANFYTLVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGYS+ ++
Sbjct: 517 VDQDFAQNRQRFLAEQGYSYTIL 539
>gi|268323681|emb|CBH37269.1| putative helicase [uncultured archaeon]
Length = 567
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 209/360 (58%), Gaps = 19/360 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ ++ + L + T+ V+ QW + + + + + ++++ KE
Sbjct: 216 LPCGAGKTVVGMGVLEKLDTNTLVITTSTVASRQWREELLDKTDLDGEMVGEYSAERKE- 274
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVISL 168
+ + TY ++ + ++S+E + N R WGL++ DEVH++PA +FR V +
Sbjct: 275 ---IKPITIATYQIITYRPRKSDEDAFPHFSLFNERNWGLIIYDEVHMLPAPVFR-VTAE 330
Query: 169 TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE 228
++ +LGLTATLVRED + D+ LIGPK Y+A W +L + G+IA C E+ M E
Sbjct: 331 LQARRRLGLTATLVREDGKERDVFSLIGPKKYDAPWKELEEQGWIAEAVCNEIRLKMDDE 390
Query: 229 FFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288
+Y + + K + NP K+ ++ +H +Q GD+I+V + L A L
Sbjct: 391 LRLQYALAAD-RNKHRIAAENPRKYDITRRIVEYHRKQ-GDRILVIGTYIEQLERVAEML 448
Query: 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQ 348
++ G T + ER K+ AF+ S +++ + +SKV + +ID+P+ANV +QIS GSR++
Sbjct: 449 DAKLLTGKTPNRERMKLYDAFR-SGEIDIMVVSKVANFAIDLPDANVAVQISGTFGSRQE 507
Query: 349 EAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
EAQRLGR+LR K +DR AFFY+LVS DT++ + KRQ FL +QGY + +
Sbjct: 508 EAQRLGRLLRPK---DDRSP-------AFFYTLVSKDTKDQDFGAKRQLFLTEQGYRYHI 557
>gi|256374606|ref|YP_003098266.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
gi|255918909|gb|ACU34420.1| type III restriction protein res subunit [Actinosynnema mirum DSM
43827]
Length = 550
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/387 (35%), Positives = 219/387 (56%), Gaps = 26/387 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + G SG++VLPCGAGK++VG +A + L L TN V+ QW
Sbjct: 181 QLRDYQRLAAQAFRAGG---SGVVVLPCGAGKTMVGAAAMAEAGATTLILVTNTVAGRQW 237
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +D+I ++ + KE V + TY ++ ++S+ K +E +R
Sbjct: 238 KRELVARTSLTEDEIGEYSGERKE----IRPVTIATYQVIT---RKSKGEYKHLELFDSR 290
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATLVRED + ++ LIGPK ++ W
Sbjct: 291 DWGLIVYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGQEGEVFSLIGPKRFDVPW 349
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV +T Y E ++ + L K + ++ H
Sbjct: 350 RDIEAQGWIAPAECTEVRVTLTDAERLGYATAEPEERYK-LCSTARTKLPVVKAVLDKHP 408
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G+ +V L L E L P++ GAT + ER ++ AF+ +L+T+ +SKV
Sbjct: 409 ---GEPALVIGAYLDQLEELGEALGAPVVQGATKNKEREELFDAFRRG-ELSTLVVSKVA 464
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA+V +Q+S GSR++EAQRLGR+LR K A G++ A FYS+VS
Sbjct: 465 NFSIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPK-------ADGRQ---AHFYSVVSR 514
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITS 411
DT + Y+ RQ+FL +QGY+++++ +
Sbjct: 515 DTLDTDYAAHRQRFLAEQGYAYRIVDA 541
>gi|83590752|ref|YP_430761.1| DEAD/DEAH box helicase [Moorella thermoacetica ATCC 39073]
gi|83573666|gb|ABC20218.1| DEAD/DEAH box helicase-like protein [Moorella thermoacetica ATCC
39073]
Length = 602
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 156/444 (35%), Positives = 236/444 (53%), Gaps = 36/444 (8%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQ ++ + G +R G +IVLPCGAGK++VG++A + L L T+ + QW
Sbjct: 190 RPYQAEAARVFYAGGSSRGGSGVIVLPCGAGKTVVGIAAMALCQCYTLILVTSVTAARQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + + + + +T + KE V V TY ++ +R+E+ + +
Sbjct: 250 LAEIRDKTDLPPEMLGEYTGEKKE----IKPVTVATYQIITHRRRRNEDYPNF-QLFNQQ 304
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATL+RED D+ LIGPK Y+ W
Sbjct: 305 DWGLIIYDEVHLLPAPIFRITAEL-QARRRLGLTATLIREDGHEDDVFSLIGPKKYDLPW 363
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
L G+IA C EV + E +Y + K + NP K E +I+ HE
Sbjct: 364 KQLEAQGWIAKATCYEVRLNLPPEMRLDY-ASAGERDKYRIAATNPVKEAVVENIIKRHE 422
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
G++++V L L A +L PMI G TS+ ER ++ QAF+ L + +SKV
Sbjct: 423 ---GEQVLVIGQYLEQLERLARRLGVPMITGQTSNRERERLYQAFR-EGTLKCLVVSKVA 478
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+PEA+V +Q+S GSR++EAQRLGRILR K GG A FY+LV+
Sbjct: 479 NFAIDLPEASVAVQVSGAFGSRQEEAQRLGRILRPK-------KGG---LPASFYTLVTR 528
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAV 444
+T E ++ RQ FL +QGY + +I G DL D+ L K + + AV
Sbjct: 529 ETVEQEFAVHRQLFLTEQGYRYVII--------GPDLE-QEGDKVYPL--KTPTGSEPAV 577
Query: 445 G--LEQLDEDADDIALHKARRIAG 466
G ++Q + D I L R+ AG
Sbjct: 578 GAVIKQENLDGKVIDLMAWRQKAG 601
>gi|282853546|ref|ZP_06262883.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|386071008|ref|YP_005985904.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
gi|422458408|ref|ZP_16535062.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|422465393|ref|ZP_16541996.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|422468857|ref|ZP_16545388.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|282582999|gb|EFB88379.1| DEAD/DEAH box helicase [Propionibacterium acnes J139]
gi|314982316|gb|EFT26409.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA3]
gi|315092642|gb|EFT64618.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA4]
gi|315104630|gb|EFT76606.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA2]
gi|353455374|gb|AER05893.1| DEAD/DEAH box helicase [Propionibacterium acnes ATCC 11828]
Length = 552
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 213/383 (55%), Gaps = 27/383 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +++ E + + + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESARMACAMAEPDVRYRMAATL-PIKNKVVRDLV---ERH 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 410 RGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS DT
Sbjct: 469 SIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRDT 517
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ +++ RQ+FL +QGYS+++I
Sbjct: 518 VDTDFASHRQRFLAEQGYSYRII 540
>gi|422577080|ref|ZP_16652617.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
gi|314922095|gb|EFS85926.1| DEAD/DEAH box helicase [Propionibacterium acnes HL001PA1]
Length = 552
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 213/383 (55%), Gaps = 27/383 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +++ E + + + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESARMACAMAEPDVRYRMAATL-PIKNKVVRDLV---ERH 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 410 RGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS DT
Sbjct: 469 SIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRDT 517
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ +++ RQ+FL +QGYS+++I
Sbjct: 518 VDTDFASHRQRFLAEQGYSYRII 540
>gi|297563115|ref|YP_003682089.1| helicase [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111]
gi|296847563|gb|ADH69583.1| helicase domain protein [Nocardiopsis dassonvillei subsp.
dassonvillei DSM 43111]
Length = 548
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/382 (36%), Positives = 210/382 (54%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ G SG++VLPCGAGK++VG +A + L L TN VSV QW
Sbjct: 181 RGYQREAAESFHAGG---SGVVVLPCGAGKTVVGAAAMAMTGATTLILVTNTVSVHQWKT 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++A R + +E R+W
Sbjct: 238 ELLRRTSLTEDEIGEYSGTRKE----IRPVTIATYQVMA---ARRKGVYTHLELFDARDW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 291 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +++ Y E + Y + + E+
Sbjct: 350 MENQGWIAPADCVEVRVDLSEAERLAYATAEPEDR----YRFCASSETKTSVVREIVERH 405
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++++V + L E L P+I G T + ER ++ AF+ S DL T+ +SKV +
Sbjct: 406 PDEQVLVIGSYIDQLDELGASLGAPVIKGETRNKERERLFDAFR-SGDLRTLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V +Q+S GSR++EAQRLGR+LR K A G+ A FY++V+ DT
Sbjct: 465 SIDLPEAGVAVQVSGSFGSRQEEAQRLGRVLRPK-------ADGR---AARFYAVVARDT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 515 LDQDYAAHRQRFLAEQGYAYRI 536
>gi|422389943|ref|ZP_16470040.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
gi|422463969|ref|ZP_16540582.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|422566280|ref|ZP_16641919.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|314965180|gb|EFT09279.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA2]
gi|315093939|gb|EFT65915.1| DEAD/DEAH box helicase [Propionibacterium acnes HL060PA1]
gi|327329470|gb|EGE71230.1| DNA repair helicase RAD25 [Propionibacterium acnes HL103PA1]
Length = 552
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 213/383 (55%), Gaps = 27/383 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +++ E + + + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESARMACAMAEPDVRYRMAATL-PIKNKVVRDLV---ERH 409
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 410 RGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVANF 468
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS DT
Sbjct: 469 SIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRDT 517
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ +++ RQ+FL +QGYS+++I
Sbjct: 518 VDTDFASHRQRFLAEQGYSYRII 540
>gi|167966812|ref|ZP_02549089.1| DNA helicase ercc3 [Mycobacterium tuberculosis H37Ra]
Length = 542
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 138/384 (35%), Positives = 214/384 (55%), Gaps = 26/384 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I +T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQVSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
D+ + Y+ RQ+FL +QGY + +
Sbjct: 508 DSLDAEYAAHRQRFLAEQGYGYII 531
>gi|359771470|ref|ZP_09274921.1| putative ATP-dependent DNA helicase [Gordonia effusa NBRC 100432]
gi|359311357|dbj|GAB17699.1| putative ATP-dependent DNA helicase [Gordonia effusa NBRC 100432]
Length = 556
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 214/382 (56%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 186 RDYQALAAESFWAGG---SGVVVLPCGAGKTMVGAAAMAQASATTLILVTNTVAGRQWKR 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE V + TY ++ ++S+ K ++ +R+W
Sbjct: 243 ELIARTSLTEEEIGEYSGERKE----IRPVTIATYQVMT---RKSKGEYKNLDLFDSRDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 296 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T + +Y E +K Y + + ++
Sbjct: 355 IEAQGWIAPADCIEVRVTLTDDERLQYAVAEPEEK----YKLCSTAHTKVNVVKAILDRH 410
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
R +V + L E L P+I G+T + +R + F+ S ++ T+ +SKV +
Sbjct: 411 RDAPTLVIGAYIDQLEELGEALGAPVIQGSTKNKDREVLFDQFR-SGEIQTLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 470 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKRD------GGQ----AHFYSVVSRDT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ Y+ RQ+FL +QGY++++
Sbjct: 520 LDADYAAHRQRFLAEQGYAYRI 541
>gi|403746349|ref|ZP_10954882.1| type III restriction protein res subunit [Alicyclobacillus
hesperidum URH17-3-68]
gi|403120680|gb|EJY55034.1| type III restriction protein res subunit [Alicyclobacillus
hesperidum URH17-3-68]
Length = 486
Score = 220 bits (560), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/395 (33%), Positives = 211/395 (53%), Gaps = 28/395 (7%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
+L ++L+ R YQ ++ + F NG A G+IVLPCGAGK++VG + ++ L L
Sbjct: 111 ELAIDLRQEKALRAYQYNAV-QAFLNGPAH-GVIVLPCGAGKTVVGTAILASLRMPTLIL 168
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
A N + +QW W+T+ + C + + V + TY + ++ +
Sbjct: 169 APNEAACEQWKQHLLAWTTLSE---CDLDVHADN---PDKPVAIATYGRLVARDRKGQL- 221
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+ +E R R + L++ DEVH +PA FR L + KLGL+ATLVRED R+ D+ L
Sbjct: 222 -RRLERYRQRGFALVIYDEVHTLPARWFRLTSELAAAR-KLGLSATLVREDGRVGDVLSL 279
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254
+GP +++ DL G +A V+C EV P+ +Y ++ ++ K + NP+K
Sbjct: 280 VGPVVFQTQARDLTDSGHLAPVRCVEVRVPLIGRDRQDY-ERGSAADKHRIAAQNPSKLD 338
Query: 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRD 314
A + H R ++ +V L E A +LR P+I G T H ER ++ F+
Sbjct: 339 AATEICALH---RAERTLVMGYYTSPLHELANRLRVPVIDGRTLHSERLRLYNEFRAG-G 394
Query: 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEY 374
L + +S+V + +ID+P A + +Q+S GSR++EAQRLGRILR GK
Sbjct: 395 LPVLIVSRVANAAIDLPSATIAVQLSGLYGSRQEEAQRLGRILRPNGK------------ 442
Query: 375 NAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
A FYSLVS T E+ + RQ +L++QGY+++++
Sbjct: 443 QAIFYSLVSDQTVEVRRAFHRQSYLVEQGYTYEIV 477
>gi|381398295|ref|ZP_09923699.1| type III restriction protein res subunit [Microbacterium
laevaniformans OR221]
gi|380774261|gb|EIC07561.1| type III restriction protein res subunit [Microbacterium
laevaniformans OR221]
Length = 547
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/383 (35%), Positives = 212/383 (55%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ ++ +F G SG++VLPCGAGK+LVG +A K + L L TN VS QW
Sbjct: 183 RPYQRHAVD-IFSEGG--SGVVVLPCGAGKTLVGAAAMAETKTTTLILVTNTVSARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ ++I ++ SKE V + TY ++ K +++ + +W
Sbjct: 240 ELLKRTTLTPEEIGEYSGQSKE----VKPVTIATYQILTAKRKGQYAHLALLDAL---DW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK ++A W +
Sbjct: 293 GLIVYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRFDAPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFI+ C EV + EY + ++ + L K + L+ H
Sbjct: 352 IEAQGFISPAVCYEVRVDLPPSDRMEYAASADDERYR-LAATAHAKIGVVKDLVARHA-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G++I+V L + + L P I GAT ER ++ AF+ +R L + +SKV +
Sbjct: 409 -GEQILVIGQYLDQIDVLSEALDAPKITGATPVDEREELFAAFREAR-LPVLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P+A+V IQ+S GSR++EAQRLGR+LR K + A FY+L++ DT
Sbjct: 467 SIDLPDASVAIQVSGSFGSRQEEAQRLGRLLRPKSN----------GHTASFYTLIARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGYS+ ++
Sbjct: 517 VDQDFAQNRQRFLAEQGYSYTIL 539
>gi|22474468|emb|CAD29143.1| DNA repair helicase [Paracentrotus lividus]
Length = 157
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/165 (64%), Positives = 127/165 (76%), Gaps = 8/165 (4%)
Query: 216 VQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFA 275
VQCAEVWCPM EFF EYL ++K+ LYVMNPNKFRAC+FL+ FHEQ R DK+IVF+
Sbjct: 1 VQCAEVWCPMAPEFFREYLAIR-TRKRLLLYVMNPNKFRACQFLVWFHEQ-RNDKVIVFS 58
Query: 276 DNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANV 335
DN+FAL YA+ + +P IYG TS ER +ILQ F+ + +NTIF+SKVGDNS D+PEANV
Sbjct: 59 DNVFALKHYAIAMGRPYIYGPTSQGERMQILQNFQHNPAVNTIFISKVGDNSFDLPEANV 118
Query: 336 IIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380
+IQ+SSH GSRRQEAQRLGRILRAK EEYNAFFY+
Sbjct: 119 LIQVSSHGGSRRQEAQRLGRILRAKK------GAAAEEYNAFFYT 157
>gi|363420727|ref|ZP_09308818.1| DNA repair helicase [Rhodococcus pyridinivorans AK37]
gi|359735394|gb|EHK84355.1| DNA repair helicase [Rhodococcus pyridinivorans AK37]
Length = 552
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 140/393 (35%), Positives = 215/393 (54%), Gaps = 27/393 (6%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L+ E P R YQE + + G SG++VLPCGAGK++VG +A + + L L
Sbjct: 175 LDFETNPW-HLRDYQELAADSFWSGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILV 230
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE 135
TN V+ QW + +++ +D+I ++ + KE V + TY ++ ++S+
Sbjct: 231 TNTVAGRQWKRELIARTSLTEDEIGEYSGEKKE----IRPVTIATYQVIT---RKSKGEY 283
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
+ +E +R+WGL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LI
Sbjct: 284 RNLELFDSRDWGLMIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLI 342
Query: 196 GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255
GPK ++A W D+ G+IA C EV +T Y E ++ Y +
Sbjct: 343 GPKRFDAPWKDIEAQGWIAPADCVEVRVTLTDAERMAYAVAEPEER----YKLCSTARTK 398
Query: 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDL 315
+ EQ + ++ + L E L P+I G+T ER + F+ S +L
Sbjct: 399 IPVVKSILEQHQDAPTLIIGAYIDQLDELGEALDAPVIKGSTKTKEREALFDRFR-SGEL 457
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375
+ +SKV + SID+PEA+V IQ+S GSR++EAQRLGR+LR K GG+
Sbjct: 458 KVLVVSKVANFSIDLPEASVAIQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ---- 507
Query: 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
A FYS+VS DT + Y+ RQ+FL +QGY++++
Sbjct: 508 AHFYSVVSRDTLDAEYAAHRQRFLAEQGYAYRI 540
>gi|260904266|ref|ZP_05912588.1| type III restriction protein res subunit [Brevibacterium linens
BL2]
Length = 544
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 128/382 (33%), Positives = 218/382 (57%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ++++ SG++VLPCGAGK++VGV+ R++ + L L TN+V+ QW
Sbjct: 186 RDYQKEAIDHSLSG---ESGVVVLPCGAGKTIVGVATMSRVQTTTLILVTNSVAARQWKD 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D++ ++ +KE R + + TY ++ R + S +E + ++W
Sbjct: 243 EILARTSLTEDEVGEYSGSTKE-IR---PITIATYQVLT---TRRKGSYLHLELLDAKDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR SL ++ +LGLTATLVRED R ++ LIGPK YE W +
Sbjct: 296 GLVIYDEVHLLPAPIFRLTASL-QARRRLGLTATLVREDGREDEVFSLIGPKQYEVPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L + G+IA C EV + + Y + + + + L + K L+ H +
Sbjct: 355 LERMGYIATASCHEVRVRLDGGTRTAYARADGEDRYR-LAATSDAKLPIVRELVADHPKA 413
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+I+V L L E +L P++ G T +R ++ + F+ S + + +SKV +
Sbjct: 414 ---QILVIGQYLDQLEEVGRELDAPVLTGQTPESQRQELFRDFR-SGAIPVLVVSKVANF 469
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+P A+V IQ+S GSR++EAQRLGRILR K ++ +A FY++V+ DT
Sbjct: 470 SVDLPAASVAIQVSGAFGSRQEEAQRLGRILRPK----------EDSGSATFYTVVAADT 519
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ ++ +R++FL +QGYS+ +
Sbjct: 520 VDEHFAAQRRRFLTEQGYSYDI 541
>gi|317123892|ref|YP_004098004.1| helicase [Intrasporangium calvum DSM 43043]
gi|315587980|gb|ADU47277.1| helicase domain protein [Intrasporangium calvum DSM 43043]
Length = 550
Score = 219 bits (557), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 135/385 (35%), Positives = 214/385 (55%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ++++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 189 RPYQQQAVDGFWHGG---SGVVVLPCGAGKTLVGAGAMAAAKATTLILVTNTVSARQWKD 245
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE V + TY ++ R + + ++ + R+W
Sbjct: 246 ELIRRTSLTEEEIGEYSGARKE----IRPVTIATYQVLT---TRRKGAYTHLDLLDARDW 298
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R +D+ LIGPK ++A W D
Sbjct: 299 GLVVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKD 357
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + Y E + + L K E L + H
Sbjct: 358 IEAQGYIAPADCVEVRVTLPDSLRLAYATAEPEDRYR-LASCADAKLAVVEQLAQRHT-- 414
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+ ++ L L E A +L +I G T+ ER ++ AF+ ++ + +SKV +
Sbjct: 415 -AEPTLIIGQYLDQLHEIAERLDADVITGETTVRERQRLYDAFRRG-EITRLVVSKVANF 472
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V IQ+S GSR++EAQRLGR+LR KG + A FY++V+ DT
Sbjct: 473 SIDLPEASVAIQVSGTFGSRQEEAQRLGRVLRPKG----------DGRTAHFYTVVARDT 522
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGYS++++ +
Sbjct: 523 VDADFAAHRQRFLAEQGYSYRIVDA 547
>gi|373487888|ref|ZP_09578554.1| helicase domain protein [Holophaga foetida DSM 6591]
gi|372007662|gb|EHP08291.1| helicase domain protein [Holophaga foetida DSM 6591]
Length = 580
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 134/374 (35%), Positives = 207/374 (55%), Gaps = 26/374 (6%)
Query: 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS 106
++VLPCGAGK+++G++ R++ L L TN +V QW + +T+ +DQI +T D+
Sbjct: 215 VLVLPCGAGKTVIGIACMARLQTHTLVLTTNVTAVKQWKQELLDKTTLTEDQIGLYTGDT 274
Query: 107 KERFRGNAGVVVTTYNMVAFGGKRSEESE--KIIEEIRNREWGLLLMDEVHVVPAHMFRK 164
KE V + TY ++ + + E K+ E WGL++ DEVH++PA +FR
Sbjct: 275 KE----IRPVTIATYQILTYRRTKGGPFEHFKLFEAA---NWGLVIHDEVHMLPAPIFRA 327
Query: 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP 224
V L ++ +LGLTATLVRED + D+ LIGPK + W L K GFIA C E+ P
Sbjct: 328 VAEL-QAKRRLGLTATLVREDGKEEDVFSLIGPKRVDVPWKVLEKDGFIATAHCLEIRVP 386
Query: 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEY 284
+ + EY + + + + N K + L+ H + D I++ L L
Sbjct: 387 LPTDERMEY-AVADQRARFRIASENSLKLTVVDELLAGHPE---DSILIIGQYLEQLRIL 442
Query: 285 AMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344
+L+ P++ G T ER ++ + F+ +L + +SKV + +ID+P+A+V IQ+S G
Sbjct: 443 GKRLQVPVLTGQTPEREREELFRQFRAG-ELRILIVSKVANFAIDLPDASVAIQVSGTFG 501
Query: 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404
SR++EAQRLGR+LR KG ++FYSL+S DT E ++ RQ FL +QGY
Sbjct: 502 SRQEEAQRLGRVLRPKGN----------RNVSYFYSLISRDTTEQEFARNRQLFLTEQGY 551
Query: 405 SFKVITSLPPPDSG 418
+ +I S DSG
Sbjct: 552 RY-LIESRHIEDSG 564
>gi|422473913|ref|ZP_16550383.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
gi|313834526|gb|EFS72240.1| DEAD/DEAH box helicase [Propionibacterium acnes HL056PA1]
Length = 552
Score = 218 bits (554), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|365962182|ref|YP_004943748.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365964426|ref|YP_004945991.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365973362|ref|YP_004954921.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|387502843|ref|YP_005944072.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|419420681|ref|ZP_13960910.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|422387315|ref|ZP_16467432.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA2]
gi|422392114|ref|ZP_16472188.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL099PA1]
gi|422395160|ref|ZP_16475201.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL097PA1]
gi|422424884|ref|ZP_16501830.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|422427243|ref|ZP_16504161.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|422431858|ref|ZP_16508728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|422436622|ref|ZP_16513469.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|422442842|ref|ZP_16519645.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|422446641|ref|ZP_16523386.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|422450009|ref|ZP_16526726.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|422453274|ref|ZP_16529970.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|422456418|ref|ZP_16533082.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|422460415|ref|ZP_16537049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|422476788|ref|ZP_16553227.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|422484213|ref|ZP_16560592.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|422491773|ref|ZP_16568084.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|422494156|ref|ZP_16570451.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|422500454|ref|ZP_16576710.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|422511566|ref|ZP_16587709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|422515627|ref|ZP_16591739.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|422518196|ref|ZP_16594268.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|422520842|ref|ZP_16596884.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|422523774|ref|ZP_16599786.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|422526334|ref|ZP_16602333.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|422528355|ref|ZP_16604337.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|422531280|ref|ZP_16607228.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|422535815|ref|ZP_16611723.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|422538301|ref|ZP_16614175.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|422541084|ref|ZP_16616942.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|422543632|ref|ZP_16619472.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|422546547|ref|ZP_16622374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|422550974|ref|ZP_16626771.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|422557739|ref|ZP_16633482.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|422562547|ref|ZP_16638225.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|422570476|ref|ZP_16646071.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|422578287|ref|ZP_16653816.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|313765421|gb|EFS36785.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA1]
gi|313772592|gb|EFS38558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL074PA1]
gi|313792945|gb|EFS41012.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA1]
gi|313802605|gb|EFS43827.1| DEAD/DEAH box helicase [Propionibacterium acnes HL110PA2]
gi|313810814|gb|EFS48528.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA1]
gi|313814341|gb|EFS52055.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA1]
gi|313815175|gb|EFS52889.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA1]
gi|313828480|gb|EFS66194.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA2]
gi|313831933|gb|EFS69647.1| DEAD/DEAH box helicase [Propionibacterium acnes HL007PA1]
gi|313840243|gb|EFS77957.1| DEAD/DEAH box helicase [Propionibacterium acnes HL086PA1]
gi|314915936|gb|EFS79767.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA4]
gi|314916965|gb|EFS80796.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA1]
gi|314921485|gb|EFS85316.1| DEAD/DEAH box helicase [Propionibacterium acnes HL050PA3]
gi|314931191|gb|EFS95022.1| DEAD/DEAH box helicase [Propionibacterium acnes HL067PA1]
gi|314954750|gb|EFS99156.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA1]
gi|314958917|gb|EFT03019.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA1]
gi|314964361|gb|EFT08461.1| DEAD/DEAH box helicase [Propionibacterium acnes HL082PA1]
gi|314969460|gb|EFT13558.1| DEAD/DEAH box helicase [Propionibacterium acnes HL037PA1]
gi|314974527|gb|EFT18622.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA1]
gi|314977279|gb|EFT21374.1| DEAD/DEAH box helicase [Propionibacterium acnes HL045PA1]
gi|315078624|gb|EFT50655.1| DEAD/DEAH box helicase [Propionibacterium acnes HL053PA2]
gi|315081915|gb|EFT53891.1| DEAD/DEAH box helicase [Propionibacterium acnes HL078PA1]
gi|315097598|gb|EFT69574.1| DEAD/DEAH box helicase [Propionibacterium acnes HL038PA1]
gi|315099814|gb|EFT71790.1| DEAD/DEAH box helicase [Propionibacterium acnes HL059PA2]
gi|315101878|gb|EFT73854.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA1]
gi|315106614|gb|EFT78590.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA1]
gi|315110404|gb|EFT82380.1| DEAD/DEAH box helicase [Propionibacterium acnes HL030PA2]
gi|327331551|gb|EGE73290.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA2]
gi|327335058|gb|EGE76769.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL097PA1]
gi|327447055|gb|EGE93709.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA1]
gi|327449909|gb|EGE96563.1| DEAD/DEAH box helicase [Propionibacterium acnes HL043PA2]
gi|327454752|gb|EGF01407.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA3]
gi|327456900|gb|EGF03555.1| DEAD/DEAH box helicase [Propionibacterium acnes HL092PA1]
gi|328755809|gb|EGF69425.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA1]
gi|328756588|gb|EGF70204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL025PA2]
gi|328761680|gb|EGF75195.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL099PA1]
gi|335276888|gb|AEH28793.1| DEAD/DEAH box helicase [Propionibacterium acnes 6609]
gi|365738863|gb|AEW83065.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn31]
gi|365741107|gb|AEW80801.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn17]
gi|365743361|gb|AEW78558.1| DEAD/DEAH box helicase [Propionibacterium acnes TypeIA2 P.acn33]
gi|379979055|gb|EIA12379.1| DEAD/DEAH box helicase [Propionibacterium acnes PRP-38]
gi|456740051|gb|EMF64582.1| DEAD/DEAH box helicase [Propionibacterium acnes FZ1/2/0]
Length = 552
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|422559000|ref|ZP_16634728.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
gi|314985619|gb|EFT29711.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA1]
Length = 552
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|422428926|ref|ZP_16505831.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
gi|314980563|gb|EFT24657.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA2]
Length = 552
Score = 218 bits (554), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|289428471|ref|ZP_06430157.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|386023418|ref|YP_005941721.1| DNA helicase [Propionibacterium acnes 266]
gi|289158443|gb|EFD06660.1| DEAD/DEAH box helicase [Propionibacterium acnes J165]
gi|332674874|gb|AEE71690.1| DNA helicase [Propionibacterium acnes 266]
Length = 553
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 186 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 243 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 296 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 355 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 409
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 410 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 468
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 469 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 517
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 518 TVDTDFASHRQRFLAEQGYSYR 539
>gi|354606435|ref|ZP_09024406.1| hypothetical protein HMPREF1003_00973 [Propionibacterium sp.
5_U_42AFAA]
gi|422384461|ref|ZP_16464602.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA3]
gi|422447472|ref|ZP_16524204.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|422479701|ref|ZP_16556111.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|422481533|ref|ZP_16557932.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|422487604|ref|ZP_16563935.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|422489052|ref|ZP_16565379.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|422498015|ref|ZP_16574288.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|422504240|ref|ZP_16580477.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|422504942|ref|ZP_16581176.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|422509427|ref|ZP_16585585.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|422514403|ref|ZP_16590524.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|422535349|ref|ZP_16611272.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|422553142|ref|ZP_16628929.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|422554616|ref|ZP_16630386.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|422567764|ref|ZP_16643390.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|313806616|gb|EFS45123.1| DEAD/DEAH box helicase [Propionibacterium acnes HL087PA2]
gi|313817160|gb|EFS54874.1| DEAD/DEAH box helicase [Propionibacterium acnes HL046PA2]
gi|313821776|gb|EFS59490.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA1]
gi|313824332|gb|EFS62046.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA2]
gi|313826692|gb|EFS64406.1| DEAD/DEAH box helicase [Propionibacterium acnes HL063PA1]
gi|314926883|gb|EFS90714.1| DEAD/DEAH box helicase [Propionibacterium acnes HL036PA3]
gi|314961211|gb|EFT05312.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA2]
gi|314987445|gb|EFT31536.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA2]
gi|314988958|gb|EFT33049.1| DEAD/DEAH box helicase [Propionibacterium acnes HL005PA3]
gi|315082589|gb|EFT54565.1| DEAD/DEAH box helicase [Propionibacterium acnes HL027PA2]
gi|315086301|gb|EFT58277.1| DEAD/DEAH box helicase [Propionibacterium acnes HL002PA3]
gi|315087551|gb|EFT59527.1| DEAD/DEAH box helicase [Propionibacterium acnes HL072PA1]
gi|327333533|gb|EGE75253.1| putative ATP-dependent DNA helicase [Propionibacterium acnes
HL096PA3]
gi|327445441|gb|EGE92095.1| DEAD/DEAH box helicase [Propionibacterium acnes HL013PA2]
gi|328758685|gb|EGF72301.1| DEAD/DEAH box helicase [Propionibacterium acnes HL020PA1]
gi|353557842|gb|EHC27210.1| hypothetical protein HMPREF1003_00973 [Propionibacterium sp.
5_U_42AFAA]
Length = 552
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|295130034|ref|YP_003580697.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|342211342|ref|ZP_08704067.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
gi|291376058|gb|ADD99912.1| DEAD/DEAH box helicase [Propionibacterium acnes SK137]
gi|340766886|gb|EGR89411.1| type III restriction enzyme, res subunit [Propionibacterium sp.
CC003-HC2]
Length = 553
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 186 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 242
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 243 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 295
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 296 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 354
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 355 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 409
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 410 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 468
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 469 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 517
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 518 TVDTDFASHRQRFLAEQGYSYR 539
>gi|407934845|ref|YP_006850487.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
gi|407903426|gb|AFU40256.1| DEAD/DEAH box helicase [Propionibacterium acnes C1]
Length = 552
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|289424569|ref|ZP_06426352.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|335053521|ref|ZP_08546358.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|417930924|ref|ZP_12574297.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
gi|289155266|gb|EFD03948.1| DEAD/DEAH box helicase [Propionibacterium acnes SK187]
gi|333766924|gb|EGL44201.1| helicase C-terminal domain protein [Propionibacterium sp. 434-HC2]
gi|340769247|gb|EGR91771.1| type III restriction enzyme, res subunit [Propionibacterium acnes
SK182]
Length = 694
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 327 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 383
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 384 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 436
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 437 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 495
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 496 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 550
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 551 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 609
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 610 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 658
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 659 TVDTDFASHRQRFLAEQGYSYR 680
>gi|119718166|ref|YP_925131.1| helicase domain-containing protein [Nocardioides sp. JS614]
gi|119538827|gb|ABL83444.1| helicase domain protein [Nocardioides sp. JS614]
Length = 546
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 135/383 (35%), Positives = 207/383 (54%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++ + G SG++VLPCGAGK+LVG +A + + L L TN VS QW
Sbjct: 183 RAYQREAAESFWHGG---SGVVVLPCGAGKTLVGAAAMAEAQATTLILVTNTVSARQWKD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +I ++ KE V + TY ++ + + +E + R+W
Sbjct: 240 ELVRRTSLTPAEIGEYSGAVKE----IRPVTIATYQVMT---TKRKGVYPHLELLDARDW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR +L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 293 GLIVYDEVHLLPAPIFRMTANL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV + Y E ++ + L +K E L+ H
Sbjct: 352 IEAQGWIAPADCVEVRVTLPSGERLAYATAEPEERYR-LASCTHHKIDVVESLVAAHP-- 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G +V + L E A+ L P+I G T ER ++ AF+ ++ + +SKV +
Sbjct: 409 -GQPTLVIGQYIEQLDELALALDAPVIKGETKVAERQRLFDAFRHG-EIGLLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+P A V IQ+S GSR++EAQRLGR+LR K E A FY++VS DT
Sbjct: 467 SIDLPSAEVAIQVSGSFGSRQEEAQRLGRLLRPK----------TEGRTAHFYTIVSRDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY+++++
Sbjct: 517 VDAEFAQNRQRFLAEQGYAYRIV 539
>gi|422435129|ref|ZP_16511987.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
gi|327455607|gb|EGF02262.1| DEAD/DEAH box helicase [Propionibacterium acnes HL083PA2]
Length = 552
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/382 (35%), Positives = 216/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 185 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 241
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S+++ R V + TY ++ + +E R+W
Sbjct: 242 ELVRRTSLAPDDIGEY-SGSRKQVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 294
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 295 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 353
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 354 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 408
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SK+ +
Sbjct: 409 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKIAN 467
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 468 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 516
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 517 TVDTDFASHRQRFLAEQGYSYR 538
>gi|359420342|ref|ZP_09212280.1| putative ATP-dependent DNA helicase [Gordonia araii NBRC 100433]
gi|358243699|dbj|GAB10349.1| putative ATP-dependent DNA helicase [Gordonia araii NBRC 100433]
Length = 561
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 134/385 (34%), Positives = 215/385 (55%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG++VLPCGAGK++VG +A + + L L TN V+ QW
Sbjct: 188 RDYQALAAESFWAGG---SGVVVLPCGAGKTMVGAAAMAKAGATTLILVTNTVAGRQWKR 244
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ ++S+ + ++ +R+W
Sbjct: 245 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVMT---RKSKGEYRNLDLFDSRDW 297
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK +++ W D
Sbjct: 298 GLIIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRFDSPWKD 356
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA +C EV +T Y EN +K Y + + ++
Sbjct: 357 IEAQGWIAPAECIEVRVTLTDSERLSYAIAENDEK----YKLCSTAHTKVGVVKSILDRH 412
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G ++ L L E L P+I G+T ER + AF+ ++ + +SKV +
Sbjct: 413 PGAPTLIIGAYLDQLAELGEALDAPVIQGSTKTKEREALFDAFRRG-EVERLVVSKVANF 471
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+VS DT
Sbjct: 472 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKSD------GGQ----AHFYSVVSRDT 521
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ Y+ RQ+FL +QGY+++++ +
Sbjct: 522 LDADYAAHRQRFLAEQGYAYRIVDA 546
>gi|50841956|ref|YP_055183.1| superfamily II DNA/RNA helicase [Propionibacterium acnes KPA171202]
gi|50839558|gb|AAT82225.1| DNA or RNA helicase of superfamily II [Propionibacterium acnes
KPA171202]
Length = 694
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/382 (35%), Positives = 215/382 (56%), Gaps = 29/382 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ + + G SG++VLPCGAGK++VG +A + + L L TN VS QW
Sbjct: 327 RPYQKVAAQSFWDGG---SGVVVLPCGAGKTVVGATAMSLARCTTLILVTNTVSARQWKE 383
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ D I + S S++ R V + TY ++ + +E R+W
Sbjct: 384 ELVRRTSLAPDDIGEY-SGSRKPVRP---VTIATYQVIT---TKRHGVHPHLELFEARDW 436
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED D+ LIGPK Y+A W +
Sbjct: 437 GLVIYDEVHLLPAPVFRMTADL-QARRRLGLTATLVREDGHEDDVFTLIGPKRYDAPWKE 495
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ G+IA C EV +++ + + + + + + + A + P K + L+ E+
Sbjct: 496 IEAQGWIAPADCVEVRVSLSESDRMACAMAEPDVRYRMAATL--PIKNKVVRDLV---ER 550
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
RG +V + L E A +L+ P+I G+T+ R +I Q F+ + ++ + +SKV +
Sbjct: 551 HRGQPTLVIGQYVDQLEELAAELKCPIITGSTTPTRRQEIYQDFREGQ-IDLLVVSKVAN 609
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
SID+P A V IQ+S GSR++EAQRLGR+LR KE A FY++VS D
Sbjct: 610 FSIDLPSAEVAIQVSGAFGSRQEEAQRLGRLLRP-----------KEGLVARFYAVVSRD 658
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T + +++ RQ+FL +QGYS++
Sbjct: 659 TVDTDFASHRQRFLAEQGYSYR 680
>gi|295394515|ref|ZP_06804738.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972694|gb|EFG48546.1| DNA or RNA helicase of superfamily II [Brevibacterium mcbrellneri
ATCC 49030]
Length = 542
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/382 (33%), Positives = 213/382 (55%), Gaps = 26/382 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE+++ + SG++VLPCGAGK++VG + R++ + L L TN+VS QW
Sbjct: 181 RDYQERAVDAFV---QGESGVVVLPCGAGKTVVGAATMSRVQTTTLILVTNSVSAKQWKA 237
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ ++I ++ + K+ R V + TY ++ R + S +E + R W
Sbjct: 238 ELLRRTSLTPEEIGEYSGNLKQ-IR---PVTIATYQVLT---TRRKGSYLHLELLDARNW 290
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK ++ W +
Sbjct: 291 GLVIYDEVHLLPAPIFRLTAGL-QARRRLGLTATLVREDGREEEVFSLIGPKQFDVPWKE 349
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G IA C EV + ++ S Y E + + L K RA + +++ H
Sbjct: 350 IEAAGHIATATCHEVRVKLDRDLRSTYASAEGENRYR-LAASCEAKVRATKHIVKEHPDA 408
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+++V L L E L P++ G T ER ++ + F+ ++ + +SKV +
Sbjct: 409 ---QLLVIGQYLDQLEELGEALNAPVLTGKTPESERERLYEDFRNG-EVRVLVVSKVANF 464
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+P+A+V IQ+S GSR++EAQRLGRILR K + A FY++V+ +T
Sbjct: 465 SVDLPQASVAIQVSGSFGSRQEEAQRLGRILRPK----------ENALPATFYTIVTANT 514
Query: 387 QEMFYSTKRQQFLIDQGYSFKV 408
+ ++ R++FL +QGYS+ +
Sbjct: 515 VDEDFAQHRRRFLTEQGYSYTI 536
>gi|434385348|ref|YP_007095959.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
gi|428016338|gb|AFY92432.1| DNA/RNA helicase, superfamily II [Chamaesiphon minutus PCC 6605]
Length = 556
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 215/385 (55%), Gaps = 25/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++++ + G AR SG IVLPCGAGK++VG++A I+++ L L ++ SV QW
Sbjct: 190 RDYQTEAVAAFYQAGLARGGSGTIVLPCGAGKTMVGLAAIATIQENTLILTSSLTSVRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + + I ++ +SK+ A + + TY ++++ +++E + R
Sbjct: 250 QRELLDKTNLAPNSIAEYSGESKQ----TAPITLATYQILSYRSSKTDEFPHF-QLFSAR 304
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++ +LGLTATL+RED + D+ LIGPK Y+ W
Sbjct: 305 AWGLIIYDEVHLLPAPIFRITAQL-QARRRLGLTATLIREDGKEGDVFALIGPKRYDVPW 363
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ-ALYVMNPNKFRACEFLIRFH 263
+L GFIA +C E+ EY +K+ Q + NP K + L+
Sbjct: 364 RELEGQGFIAPAECTEIRVAQDPAGQMEYALA--AKRHQFRIAAENPRKNTVVQSLL--- 418
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
+ G +I++ + L L A P++ G T ER ++ F+ + + + LS+V
Sbjct: 419 AKLPGHRILIIGEYLDQLNALAKLTGLPLVTGKTCQPERDRLYDEFRAGK-ITGLILSRV 477
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
G+ ++D+P+A+V+IQ+S GSR++EAQRLGR+LR K + A FY+LVS
Sbjct: 478 GNFALDLPDADVLIQVSGKYGSRQEEAQRLGRVLRPK----------SDGRAAQFYTLVS 527
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKV 408
T E ++ RQ FL +QGY +++
Sbjct: 528 LRTCEEDFARHRQLFLSEQGYLYRI 552
>gi|430750411|ref|YP_007213319.1| DNA/RNA helicase [Thermobacillus composti KWC4]
gi|430734376|gb|AGA58321.1| DNA/RNA helicase, superfamily II [Thermobacillus composti KWC4]
Length = 568
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 137/413 (33%), Positives = 223/413 (53%), Gaps = 32/413 (7%)
Query: 16 LNMELKPHA------QPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR 66
L++ELK Q R YQE+++ +F G SG+IVLPCGAGK++VG++A R
Sbjct: 172 LDVELKAATSSGAPFQLRDYQERAVD-LFCREEAGAGGSGVIVLPCGAGKTIVGIAALAR 230
Query: 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126
++ L L + SV QW + +T+ + I + ++ V + TY+++
Sbjct: 231 LRCEALILTPSVTSVQQWRSELLDKTTLTERDIGVYAGSERQ----VRPVTIATYSILTC 286
Query: 127 GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186
++E+ +I R+WGL++ DEVH++P +FR L ++ +LGLTATLVRED
Sbjct: 287 RNSKTEDYRHMIL-FSERDWGLIIYDEVHLLPVPVFRMTADL-QAKRRLGLTATLVREDG 344
Query: 187 RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246
R D+ LIGPK ++ W L G+IA V C E+ P+ +EY + + +
Sbjct: 345 REEDVFSLIGPKRFDLFWKTLEAKGWIARVTCTEIRVPLDPSAAAEY-AAAGQRARIRIA 403
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
NP K R L+ H RG ++++ L L + A P+I G T ER ++
Sbjct: 404 AENPAKLRVVRELLALH---RGRQVLIIGQYLRQLKQMAAAWDVPLITGETGLDERDRLY 460
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
F+ + + +SKV + ++D+P+A V +Q+S GSR++EAQR+GRI+R K
Sbjct: 461 ARFRSGEE-PVLIVSKVANLAVDLPDAAVAVQVSGSYGSRQEEAQRIGRIMRPK------ 513
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419
G E +FY++V+ T+E Y+ +RQ FL +QGY+++++ +P D A
Sbjct: 514 -PGSNE---CWFYTVVTEGTKETEYARRRQLFLAEQGYAYRIM-RMPETDGAA 561
>gi|385652085|ref|ZP_10046638.1| DNA repair helicase [Leucobacter chromiiresistens JG 31]
Length = 554
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 130/383 (33%), Positives = 205/383 (53%), Gaps = 26/383 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ K++ G SG++VLPCGAGK++VG ++ + L L TNAVS QW
Sbjct: 193 RDYQAKAVEAFQRGG---SGVVVLPCGAGKTIVGAASMAAVGAKTLILVTNAVSARQWRD 249
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +D+I ++ KE V + TY ++ R + + + +W
Sbjct: 250 ELLRRTSLTEDEIGEYSGQVKE----VKPVTIATYQILT---SRRKGEYAHLSLLDAEDW 302
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
G+++ DEVH++PA +F+ L ++ +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 303 GVIVYDEVHLLPAPVFKLTADL-QARRRLGLTATLVREDGREGDVFSLIGPKRYDAAWKD 361
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ GFIA C EV + EY E+ + Y + + R ++
Sbjct: 362 IEAQGFIAPAACFEVRVDFGEAERMEYAVAEDQDR----YRIASSALIKQPVARRIIDRH 417
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
G+ ++V + L A L P+I G T ER ++ QAF+ + + +SKV +
Sbjct: 418 PGESVLVIGQYIDQLESMAEALGAPLITGQTPVDERERLFQAFRSGAE-KILVVSKVANF 476
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
S+D+P+A+V IQIS GSR++EAQRLGR+LR K A FY+L++ DT
Sbjct: 477 SVDLPDASVAIQISGSFGSRQEEAQRLGRLLRPKSN----------GATASFYTLITRDT 526
Query: 387 QEMFYSTKRQQFLIDQGYSFKVI 409
+ ++ RQ+FL +QGY++ ++
Sbjct: 527 VDQDFAQNRQRFLAEQGYAYTIL 549
>gi|421074772|ref|ZP_15535796.1| type III restriction protein res subunit [Pelosinus fermentans
JBW45]
gi|392527131|gb|EIW50233.1| type III restriction protein res subunit [Pelosinus fermentans
JBW45]
Length = 584
Score = 214 bits (546), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 137/390 (35%), Positives = 220/390 (56%), Gaps = 33/390 (8%)
Query: 27 RPYQEKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ +++ + GR SG++VLPCGAGK+++G+ A R+ + L L T+ +V QW
Sbjct: 205 RDYQRQAVDLFYDGGRETGGSGVLVLPCGAGKTIIGIGAMERVGMNTLILTTSTSAVHQW 264
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN- 143
+ + + + + ++ D K+ V VTTY MV + ++ EI N
Sbjct: 265 MREIVEKTDLPAEIVGEYSGDRKD----ICPVTVTTYQMVTYRPVKNGPFPHF--EIFNA 318
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R WGL++ DEVH +PA +F +V + ++ +LGLTATLVRED + D+ LIGPK +
Sbjct: 319 RAWGLVIYDEVHTLPAPVF-QVTAELQAKRRLGLTATLVREDGKEADVFTLIGPKKLDVP 377
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL-YVM---NPNKFRACEFL 259
W ++ G+IA C EV PM FS L+ E ++ + + Y M N K +A E++
Sbjct: 378 WTEMESAGWIATAVCTEVRVPMD---FS--LRMECAQVPERIAYRMEAENTFKLKAIEYI 432
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
+ H G+ I++ + L A P+I G V+R ++ QAF+ +R + +
Sbjct: 433 LHKHA---GEGILIIGQYIKQLEAIADYFGFPLITGKMPTVKRDELYQAFR-NRKIAVLI 488
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+SKV + +ID+P+A V +Q+S GSR++EAQRLGRILR K + +A+FY
Sbjct: 489 VSKVANFAIDLPDAAVGVQVSGAFGSRQEEAQRLGRILRPK----------DDGRSAYFY 538
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
S+VS D++E ++ RQ FL +QGY ++++
Sbjct: 539 SVVSKDSREQEFAHHRQLFLTEQGYQYQIL 568
>gi|449124740|ref|ZP_21761059.1| hypothetical protein HMPREF9723_01103 [Treponema denticola OTK]
gi|449129740|ref|ZP_21765969.1| hypothetical protein HMPREF9724_00634 [Treponema denticola SP37]
gi|448943071|gb|EMB23965.1| hypothetical protein HMPREF9723_01103 [Treponema denticola OTK]
gi|448945230|gb|EMB26104.1| hypothetical protein HMPREF9724_00634 [Treponema denticola SP37]
Length = 572
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 213/386 (55%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 204 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 263
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + ++ + + R R
Sbjct: 264 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTDAAFPHFKIFRER 318
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 319 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 377
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 378 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 436
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++R P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 437 E---NQILIIGQYLSQLETIAKEIRAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 492
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 493 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 540
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 541 QTIEEGFAEKRQKFLAEQGYDYSILT 566
>gi|392959534|ref|ZP_10325017.1| type III restriction protein res subunit [Pelosinus fermentans DSM
17108]
gi|421052601|ref|ZP_15515588.1| type III restriction protein res subunit [Pelosinus fermentans B4]
gi|421062252|ref|ZP_15524439.1| type III restriction protein res subunit [Pelosinus fermentans B3]
gi|421064029|ref|ZP_15525951.1| type III restriction protein res subunit [Pelosinus fermentans A12]
gi|421070443|ref|ZP_15531577.1| helicase domain-containing protein [Pelosinus fermentans A11]
gi|392442914|gb|EIW20475.1| type III restriction protein res subunit [Pelosinus fermentans B4]
gi|392444064|gb|EIW21536.1| type III restriction protein res subunit [Pelosinus fermentans B3]
gi|392448621|gb|EIW25810.1| helicase domain-containing protein [Pelosinus fermentans A11]
gi|392456473|gb|EIW33222.1| type III restriction protein res subunit [Pelosinus fermentans DSM
17108]
gi|392461889|gb|EIW38034.1| type III restriction protein res subunit [Pelosinus fermentans A12]
Length = 584
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 135/390 (34%), Positives = 221/390 (56%), Gaps = 33/390 (8%)
Query: 27 RPYQEKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ +++ + GR SG++VLPCGAGK+++G+ A ++ + L L T+ +V QW
Sbjct: 205 RDYQRQAVDLFYDGGRETGGSGVLVLPCGAGKTIIGIGAMEKVGMNTLILTTSTSAVHQW 264
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN- 143
+ + + + + ++ D K+ V VTTY MV + ++ EI N
Sbjct: 265 MREIVEKTDLPAEIVGEYSGDRKD----ICPVTVTTYQMVTYRPVKNGPFPHF--EIFNA 318
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
R WGL++ DEVH +PA +F +V + ++ +LGLTATLVRED + D+ LIGPK +
Sbjct: 319 RAWGLVIYDEVHTLPAPVF-QVTAELQAKRRLGLTATLVREDGKEADVFTLIGPKKLDVP 377
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL-YVM---NPNKFRACEFL 259
W ++ G+IA C EV PM FS L+ E ++ + + Y M N +K +A E++
Sbjct: 378 WTEMESAGWIATAVCTEVRVPMD---FS--LRMECAQVPERIAYRMEAENTSKLKAIEYI 432
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
+ H G+ I++ + L A P+I G V+R ++ +AF+ +R + +
Sbjct: 433 LHKHA---GEGILIIGQYIKQLEGIAEYFGFPLITGKMPTVKRDELYEAFR-NRKIPVLI 488
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+SKV + +ID+P+A V +Q+S GSR++EAQRLGRILR K + +A+FY
Sbjct: 489 VSKVANFAIDLPDAAVGVQVSGAFGSRQEEAQRLGRILRPK----------DDGRSAYFY 538
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
S+VS D++E ++ RQ FL +QGY ++++
Sbjct: 539 SVVSKDSREQEFAHHRQLFLTEQGYQYQIL 568
>gi|449108300|ref|ZP_21744944.1| hypothetical protein HMPREF9722_00640 [Treponema denticola ATCC
33520]
gi|449118979|ref|ZP_21755380.1| hypothetical protein HMPREF9725_00845 [Treponema denticola H1-T]
gi|449121368|ref|ZP_21757720.1| hypothetical protein HMPREF9727_00480 [Treponema denticola MYR-T]
gi|448951594|gb|EMB32407.1| hypothetical protein HMPREF9727_00480 [Treponema denticola MYR-T]
gi|448952007|gb|EMB32816.1| hypothetical protein HMPREF9725_00845 [Treponema denticola H1-T]
gi|448962150|gb|EMB42844.1| hypothetical protein HMPREF9722_00640 [Treponema denticola ATCC
33520]
Length = 590
Score = 213 bits (543), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 212/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 222 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 281
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + +E + + R R
Sbjct: 282 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTEAAFPHFKIFRER 336
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 337 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 395
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 396 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 454
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 455 E---NQILIIGQYLSQLETIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 510
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 511 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 558
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 559 QTIEEGFAEKRQKFLAEQGYDYSILT 584
>gi|449126575|ref|ZP_21762860.1| hypothetical protein HMPREF9733_00263 [Treponema denticola SP33]
gi|448946489|gb|EMB27344.1| hypothetical protein HMPREF9733_00263 [Treponema denticola SP33]
Length = 571
Score = 213 bits (542), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/386 (34%), Positives = 212/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 203 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 262
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + +E + + R R
Sbjct: 263 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTEAAFPHFKIFRER 317
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 318 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 376
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 377 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 435
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 436 E---NQILIIGQYLSQLETIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 491
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 492 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 539
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 540 QTIEEGFAEKRQKFLAEQGYDYSILT 565
>gi|389602007|ref|XP_001566408.2| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505277|emb|CAM39916.2| putative DNA repair helicase [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 1108
Score = 213 bits (541), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 145/234 (61%), Gaps = 8/234 (3%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D N+ L H + RPYQ SL + RA G+IVLPCGAGK+L G+ AA
Sbjct: 460 YDYVQDRTLYVPNLTLARHVRLRPYQVASLERFRRGQRAHQGVIVLPCGAGKTLTGIGAA 519
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
++ + + + N +SV QW +F W+ + +D++ T+ K+R V +TTY+MV
Sbjct: 520 ATMQTTTIVMCINNMSVFQWKREFLRWTDLTEDEVTVCTAKVKQR---PGKVFITTYSMV 576
Query: 125 AF-----GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
G +EES I++ + + WGLLL+DEVH AH F+ V++ K C LGL+A
Sbjct: 577 IAKRGNADGAAAEESRAILQAMAAQPWGLLLLDEVHTALAHHFQDVLNTIKYKCVLGLSA 636
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233
TL+RED++I DL L+GPKLYEANWLDL + GF+ANV+CAEV CPM F EY
Sbjct: 637 TLLREDDKIGDLRHLVGPKLYEANWLDLTRAGFLANVECAEVQCPMPPLFLQEY 690
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 101/166 (60%), Gaps = 8/166 (4%)
Query: 245 LYVMNPNKFRACEFLIRFHEQQRG-DKIIVFADNLFALTEYAMKLRKPMIYGATSHVERT 303
L NP K + L+ FH+Q+ DK I+F D L + +A L P + TS ER
Sbjct: 764 LASCNPYKLWCTQALLAFHQQRSPPDKAIIFCDYLADVRFFAHHLHLPFMDQRTSEAERA 823
Query: 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363
+LQ F+ S D+N I L++VGD ++D+P A+V+IQ+S SRRQEAQRLGRILR K
Sbjct: 824 NLLQYFQHSNDVNAIILTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRILRPKPPS 883
Query: 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
D A+FY+LVS DT ++ S KRQ +L DQG++++++
Sbjct: 884 LDNTC-------AYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 922
>gi|398018627|ref|XP_003862478.1| DNA repair helicase, putative [Leishmania donovani]
gi|322500708|emb|CBZ35785.1| DNA repair helicase, putative [Leishmania donovani]
Length = 1106
Score = 212 bits (540), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 149/241 (61%), Gaps = 8/241 (3%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D N+ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 458 YDYMQDRTLHVPNLNLASHVRLRPYQVASLERFCRGRKAHQGVIVLPCGAGKTLTGIGAA 517
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
++ + + + N +SV QW +F W+ + +D++ T+ K+R V +TTY+MV
Sbjct: 518 ATMQTTTIVMCINNMSVFQWQREFLRWTDLAEDEVTVCTAKVKQR---PGKVFITTYSMV 574
Query: 125 -----AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
+ G +EES I++ + + WGLLL+DEVH AH F+ V++ K C LGL+A
Sbjct: 575 VAKRGSTDGAAAEESRAILQAMTAQPWGLLLLDEVHTALAHHFQDVLNTIKYKCVLGLSA 634
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I DL L+GPKLYEANWLDL GF+ANV+CAEV CPM F EY +++
Sbjct: 635 TLLREDDKIGDLRHLVGPKLYEANWLDLTCAGFLANVECAEVQCPMPPLFLQEYHDIQST 694
Query: 240 K 240
+
Sbjct: 695 R 695
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 8/166 (4%)
Query: 245 LYVMNPNKFRACEFLIRFHEQQRG-DKIIVFADNLFALTEYAMKLRKPMIYGATSHVERT 303
L NP K + L+ FH+Q+ DK+I+F D L + +A L P + TS ERT
Sbjct: 762 LASCNPYKLWCTQALLAFHQQRSPPDKVIIFCDYLADVRFFAHHLHLPFMDRRTSEAERT 821
Query: 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363
+LQ F+ S +N I L++VGD ++D+P A+V+IQ+S SRRQEAQRLGRILR K
Sbjct: 822 NLLQYFQHSDSVNAIVLTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRILRPKPPS 881
Query: 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
D A+FY+LVS DT ++ S KRQ +L DQG++++++
Sbjct: 882 LDNTC-------AYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 920
>gi|422341009|ref|ZP_16421950.1| helicase domain-containing protein [Treponema denticola F0402]
gi|325474580|gb|EGC77766.1| helicase domain-containing protein [Treponema denticola F0402]
Length = 590
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 212/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 222 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 281
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + ++ + + R R
Sbjct: 282 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTDAAFPHFKIFRER 336
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 337 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 395
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 396 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 454
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 455 E---NQILIIGQYLSQLETIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 510
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 511 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 558
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 559 QTIEEGFAEKRQKFLAEQGYDYSILT 584
>gi|42528221|ref|NP_973319.1| helicase [Treponema denticola ATCC 35405]
gi|449110813|ref|ZP_21747413.1| hypothetical protein HMPREF9735_00462 [Treponema denticola ATCC
33521]
gi|449114373|ref|ZP_21750851.1| hypothetical protein HMPREF9721_01369 [Treponema denticola ATCC
35404]
gi|41819491|gb|AAS13238.1| helicase domain protein [Treponema denticola ATCC 35405]
gi|448956525|gb|EMB37285.1| hypothetical protein HMPREF9721_01369 [Treponema denticola ATCC
35404]
gi|448960187|gb|EMB40904.1| hypothetical protein HMPREF9735_00462 [Treponema denticola ATCC
33521]
Length = 590
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 212/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 222 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 281
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + ++ + + R R
Sbjct: 282 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTDAAFPHFKIFRER 336
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 337 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 395
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 396 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 454
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 455 E---NQILIIGQYLSQLEAIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 510
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 511 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 558
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 559 QTIEEGFAEKRQKFLAEQGYDYSILT 584
>gi|333995987|ref|YP_004528600.1| dna repair helicase Rad25 [Treponema azotonutricium ZAS-9]
gi|333735550|gb|AEF81499.1| dna repair helicase Rad25 (general transcription and dnarepair
factor iih subunit rad25) (tfiih subunit rad25)
[Treponema azotonutricium ZAS-9]
Length = 573
Score = 212 bits (539), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 132/359 (36%), Positives = 199/359 (55%), Gaps = 21/359 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCG+GK++VG++ +K + L L TN +V QW + + ++ ++I +T DSK
Sbjct: 217 LPCGSGKTVVGMAFMSLLKTNTLILTTNVAAVHQWMEELLDKTELKKEEIAEYTGDSK-- 274
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
A V V TY ++ + ++ + + R R WGL++ DEVH++PA +FR V +
Sbjct: 275 --SVAPVTVATYQIITWRPDKAADFPH-FKLFRERPWGLIIYDEVHLLPAPVFR-VTAEL 330
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED + L+GPK Y+ W DL G+IA C E+ +
Sbjct: 331 QAVRRLGLTATLVREDGAEDAVFSLVGPKRYDVPWKDLEGKGWIAEAFCTEIRLELPGHL 390
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
Y ++K L NP K A LI+ H D+I+V L L A L+
Sbjct: 391 KIPY-AVAAPREKYRLASENPLKEEAVVELIQNHPD---DQILVIGQYLSQLDSLAKLLK 446
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T + ER KI AFK ++ I +S+V + +ID+P+A++ IQ+S GSR++E
Sbjct: 447 VPLITGKTPNTEREKIYNAFKKG-EVRVIVVSRVANFAIDLPDASMAIQVSGSFGSRQEE 505
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
AQRLGRILR K E +++FY+LVS T E ++ RQQFL +QGY + +
Sbjct: 506 AQRLGRILRPK----------DEGRSSWFYTLVSRYTVEEDFAANRQQFLAEQGYKYSI 554
>gi|339898776|ref|XP_001466580.2| putative DNA repair helicase [Leishmania infantum JPCM5]
gi|321398503|emb|CAM69619.2| putative DNA repair helicase [Leishmania infantum JPCM5]
Length = 1106
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 149/241 (61%), Gaps = 8/241 (3%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D N+ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 458 YDYMQDRTLHVPNLNLASHVRLRPYQVASLERFCRGRKAHQGVIVLPCGAGKTLTGIGAA 517
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
++ + + + N +SV QW +F W+ + +D++ T+ K+R V +TTY+MV
Sbjct: 518 ATMQTTTIVMCINNMSVFQWQREFLRWTDLAEDEVTVCTAKVKQR---PGKVFITTYSMV 574
Query: 125 -----AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
+ G +EES I++ + + WGLLL+DEVH AH F+ V++ K C LGL+A
Sbjct: 575 VAKRGSTDGAAAEESRAILQAMTAQPWGLLLLDEVHTALAHHFQDVLNTIKYKCVLGLSA 634
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I DL L+GPKLYEANWLDL GF+ANV+CAEV CPM F EY +++
Sbjct: 635 TLLREDDKIGDLRHLVGPKLYEANWLDLTCAGFLANVECAEVQCPMPPLFLQEYHDIQST 694
Query: 240 K 240
+
Sbjct: 695 R 695
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 8/166 (4%)
Query: 245 LYVMNPNKFRACEFLIRFHEQQRG-DKIIVFADNLFALTEYAMKLRKPMIYGATSHVERT 303
L NP K + L+ FH+Q+ DK+I+F D L + +A L P + TS ERT
Sbjct: 762 LASCNPYKLWCTQALLAFHQQRSPPDKVIIFCDYLADVRFFAHHLHLPFMDRRTSEAERT 821
Query: 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363
+LQ F+ S +N I L++VGD ++D+P A+V+IQ+S SRRQEAQRLGRILR K
Sbjct: 822 NLLQYFQHSDSVNAIVLTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRILRPKPPS 881
Query: 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
D A+FY+LVS DT ++ S KRQ +L DQG++++++
Sbjct: 882 LDNTC-------AYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 920
>gi|320538234|ref|ZP_08038123.1| type III restriction enzyme, res subunit [Treponema phagedenis
F0421]
gi|320144916|gb|EFW36643.1| type III restriction enzyme, res subunit [Treponema phagedenis
F0421]
Length = 562
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+++ S G+ A +G IVLPCGAGK++VG+ ++ L L TN ++ QW
Sbjct: 195 RDYQKEAASSFVGDKSAGTGFGTIVLPCGAGKTVVGMLVMSMLQTDTLILTTNVAALYQW 254
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I ++ I ++ ++KE V + TY ++ + K ++ + E R R
Sbjct: 255 KRELLDKTDISENTIGLYSGETKE----IRPVTLATYQILTWR-KTTDSPFEHFELFRKR 309
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +LGLTATL+RED D+ L+GPK Y+ W
Sbjct: 310 DWGLIIYDEVHLLPAPVFRITAELQIIR-RLGLTATLIREDGCEGDVFSLVGPKRYDVPW 368
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + G+IA+ C EV + + +Y + ++K + NP K +I+ E
Sbjct: 369 KELEEAGWIAHAYCIEVRIALDSKKEIDY-AIASQREKYRIASENPRKL---PIIIKLLE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ +I++ + LTE A +++ P+I G ++ ER + F+ + + + +SKV
Sbjct: 425 KHADAQILIIGQYIAQLTEIATEIQAPVITGKMTNAEREILYNDFRMGK-IKVLVVSKVA 483
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQIS GSR++EAQRLGRILR K E +++FY+LV+
Sbjct: 484 NFAIDLPDASVAIQISGSFGSRQEEAQRLGRILRPK------------EESSYFYTLVTR 531
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
+ E ++ RQ+FL +QGY + ++T
Sbjct: 532 QSVEEEFAEHRQKFLAEQGYEYSILT 557
>gi|449105854|ref|ZP_21742547.1| hypothetical protein HMPREF9729_00812 [Treponema denticola ASLM]
gi|451970143|ref|ZP_21923372.1| hypothetical protein HMPREF9728_02584 [Treponema denticola US-Trep]
gi|448966634|gb|EMB47287.1| hypothetical protein HMPREF9729_00812 [Treponema denticola ASLM]
gi|451701205|gb|EMD55685.1| hypothetical protein HMPREF9728_02584 [Treponema denticola US-Trep]
Length = 590
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 212/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 222 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 281
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + ++ + + R R
Sbjct: 282 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTDAAFPHFKIFRER 336
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 337 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 395
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 396 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 454
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 455 E---NQILIIGQYLSQLETIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 510
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 511 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 558
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 559 QTIEEGFAEKRQKFLAEQGYDYSILT 584
>gi|449104059|ref|ZP_21740801.1| hypothetical protein HMPREF9730_01698 [Treponema denticola AL-2]
gi|448963916|gb|EMB44590.1| hypothetical protein HMPREF9730_01698 [Treponema denticola AL-2]
Length = 590
Score = 212 bits (539), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 132/386 (34%), Positives = 212/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 222 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 281
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I +T + KE V + TY ++ + ++ + + R R
Sbjct: 282 RRELLDKTNIKDEDIGLYTGEVKE----IRPVTIATYQVLTWR-PNTDAAFPHFKIFRER 336
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 337 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 395
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 396 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 454
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 455 E---NQILIIGQYLSQLETIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 510
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 511 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 558
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 559 QTIEEGFAEKRQKFLAEQGYDYSILT 584
>gi|432335750|ref|ZP_19587311.1| DNA repair helicase, partial [Rhodococcus wratislaviensis IFP 2016]
gi|430777326|gb|ELB92688.1| DNA repair helicase, partial [Rhodococcus wratislaviensis IFP 2016]
Length = 537
Score = 211 bits (538), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 133/372 (35%), Positives = 205/372 (55%), Gaps = 26/372 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A + K + L L TN V+ QW
Sbjct: 192 RDYQEMAADSFWAGG---SGVVVLPCGAGKTMVGAAAMAKAKATTLILVTNTVAGRQWKR 248
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ + KE R V + TY ++ +R++ K +E +R+W
Sbjct: 249 ELIARTSLTEEEIGEYSGERKE-IRP---VTIATYQVIT---RRTKGEYKHLELFDSRDW 301
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR L +S +LGLTATLVRED R D+ LIGPK Y+A W D
Sbjct: 302 GLVIYDEVHLLPAPVFRMTADL-QSRRRLGLTATLVREDGREGDVFSLIGPKRYDAPWKD 360
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E ++ Y + + E+
Sbjct: 361 IEAQGWIAPADCVEVRVTLTDAERMSYAVAEPDER----YKLCSTAHTKIAVVKSILERH 416
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
++ L L E L P+I G+T + ER ++ F+ ++ T+ +SKV +
Sbjct: 417 TDAPTLIIGAYLDQLDELGEALNAPVIKGSTKNKEREELFDRFRAG-EIQTLVVSKVANF 475
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA+V +Q+S GSR++EAQRLGR+LR K GG+ A FYS+V+ DT
Sbjct: 476 SIDLPEASVAVQVSGTFGSRQEEAQRLGRLLRPKHD------GGQ----AHFYSVVARDT 525
Query: 387 QEMFYSTKRQQF 398
+ Y+ RQ+F
Sbjct: 526 LDAEYAAHRQRF 537
>gi|389593769|ref|XP_003722133.1| putative DNA repair helicase [Leishmania major strain Friedlin]
gi|321438631|emb|CBZ12390.1| putative DNA repair helicase [Leishmania major strain Friedlin]
Length = 1106
Score = 211 bits (537), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 150/241 (62%), Gaps = 8/241 (3%)
Query: 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64
YD+ D+ N+ L H + RPYQ SL + +A G+IVLPCGAGK+L G+ AA
Sbjct: 458 YDYMQDHTLYVPNLSLASHVRLRPYQVASLERFRRGRKAHQGVIVLPCGAGKTLTGIGAA 517
Query: 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124
++ + + + N +SV QW +F W+ + ++++ T+ K+R V +TTY+MV
Sbjct: 518 ATMQTTTIVMCINHMSVFQWQREFLRWTNLAEEEVTVCTAKVKQR---PGKVFITTYSMV 574
Query: 125 -----AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179
+ G +EES I++ + + WGLLL+DEVH AH F+ V++ K C LGL+A
Sbjct: 575 VAKRGSADGAAAEESRAILQVMTAQPWGLLLLDEVHTALAHHFQDVLNTIKYKCVLGLSA 634
Query: 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239
TL+RED++I DL L+GPKLYEANWLDL + GF+ANV+CAEV CPM F EY + +
Sbjct: 635 TLLREDDKIGDLRHLVGPKLYEANWLDLTRAGFLANVECAEVQCPMPPLFLQEYYGIQRT 694
Query: 240 K 240
+
Sbjct: 695 R 695
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/166 (42%), Positives = 102/166 (61%), Gaps = 8/166 (4%)
Query: 245 LYVMNPNKFRACEFLIRFHEQQRG-DKIIVFADNLFALTEYAMKLRKPMIYGATSHVERT 303
L NP K + L+ FH+Q+ DK+I+F D L + +A L P + TS ERT
Sbjct: 762 LASCNPYKLWCAQALLAFHQQRSPPDKVIIFCDYLADVRFFAHHLHLPFMDQRTSEAERT 821
Query: 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363
+LQ F+ S +N I L++VGD ++D+P A+V+IQ+S SRRQEAQRLGRILR K
Sbjct: 822 NLLQYFQHSDGVNAIILTRVGDVALDLPCASVVIQVSGLGASRRQEAQRLGRILRPKPPS 881
Query: 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
D A+FY+LVS DT ++ S KRQ +L DQG++++++
Sbjct: 882 LDNTC-------AYFYTLVSQDTADVSTSYKRQSWLRDQGFAYRIL 920
>gi|398345432|ref|ZP_10530135.1| DNA or RNA helicase [Leptospira inadai serovar Lyme str. 10]
Length = 553
Score = 211 bits (537), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 199 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEI 258
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 259 ----KPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 312
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 313 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCREIRVSMDDDL 372
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
Y + ++K L NP K +A + +++ H + ++V + L E + +
Sbjct: 373 RMRY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKAFK 428
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER ++ AF+ R + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 429 IPLITGKTPLGERQELYDAFRSGR-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 487
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG E+ A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 488 AQRLGRILRPKG----------EDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 537
Query: 410 T 410
T
Sbjct: 538 T 538
>gi|398347412|ref|ZP_10532115.1| DNA or RNA helicase [Leptospira broomii str. 5399]
Length = 565
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 196/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKE- 269
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 270 ---IKPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCREIRVSMDDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
Y + ++K L NP K +A + +++ H + ++V + L E + +
Sbjct: 385 RMRY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKYFK 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER ++ AF+ R + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLGERQELYDAFRSGR-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG E+ A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------EDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|302544484|ref|ZP_07296826.1| putative ATP-dependent DNA helicase [Streptomyces hygroscopicus
ATCC 53653]
gi|302462102|gb|EFL25195.1| putative ATP-dependent DNA helicase [Streptomyces himastatinicus
ATCC 53653]
Length = 565
Score = 211 bits (536), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 128/360 (35%), Positives = 199/360 (55%), Gaps = 26/360 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ ++ + G SG++VLPCGAGK+LVG A K + L L TN VS QW
Sbjct: 182 RPYQKHAVEGFWHGG---SGVVVLPCGAGKTLVGAGAMATAKSTTLILVTNTVSARQWKH 238
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +++ +++I ++ KE + + TY ++ + + +E +R+W
Sbjct: 239 ELVRRTSLTEEEIGEYSGTRKE----IRPITIATYQVLT---TKRKGIYPHLELFDSRDW 291
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +F+ L ++ +LGLTATLVRED R +D+ LIGPK ++A W +
Sbjct: 292 GLIIYDEVHLLPAPVFKFTADL-QARRRLGLTATLVREDGRESDVFSLIGPKRFDAPWKE 350
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E +K + +K R E L+ H
Sbjct: 351 IEAQGYIAPADCVEVRVNLTDTERLAYATAETEEKYR-YCATTASKQRITEALVAKH--- 406
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
+G + +V + L E L P+I G T++ +R K+ AF+ +L+ + +SKV +
Sbjct: 407 KGQQTLVIGQYIDQLDELGEHLDAPVIKGETTNAQREKLFDAFRQG-ELSVLVVSKVANF 465
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA V IQ+S GSR++EAQRLGR+LR K + + A FYS+V+ DT
Sbjct: 466 SIDLPEATVAIQVSGTFGSRQEEAQRLGRVLRPKA----------DGHPAVFYSVVARDT 515
>gi|418757586|ref|ZP_13313773.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
gi|384115363|gb|EIE01621.1| type III restriction enzyme, res subunit / helicase C-terminal
domain multi-domain protein [Leptospira licerasiae
serovar Varillal str. VAR 010]
Length = 564
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----KPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
Y + ++K L NP K +A +++ H + ++V + L E + +
Sbjct: 385 RMRY-SIADDREKFRLASENPEKLKAIGMIMKKHSESH---LLVIGQYINQLEEISKTFK 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER ++ AF+ R + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLGERQELYDAFRSGR-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG E+ A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------EDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|269837747|ref|YP_003319975.1| type III restriction protein res subunit [Sphaerobacter
thermophilus DSM 20745]
gi|269787010|gb|ACZ39153.1| type III restriction protein res subunit [Sphaerobacter
thermophilus DSM 20745]
Length = 530
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 130/390 (33%), Positives = 207/390 (53%), Gaps = 36/390 (9%)
Query: 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79
L+P + RPYQ +++ + F G+++LPCGAGK++VGV+ A ++ + L + +
Sbjct: 169 LRPDVRLRPYQAEAVRR-FVERAVTGGVVLLPCGAGKTVVGVAIAAVLQSATLIVTPSRT 227
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIE 139
+QW + +T+ D + + R V V TY + R+ + +
Sbjct: 228 IGEQWQRHLREMTTLPPDSVGEYVPG-----REPPPVTVVTYQRLT---ARANGRQATLG 279
Query: 140 EIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199
+ + WGL++ DEVH +PA +FR+ SL +S +LGLTATLVRED R D+ L+GP +
Sbjct: 280 ALLDWPWGLVIYDEVHALPAEIFRQSASL-QSRRRLGLTATLVREDGRERDVFSLVGPTV 338
Query: 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259
+ W DL + G+I+ V C EV ++ + A ++ K R L
Sbjct: 339 FSVPWRDLERRGWISPVDCVEV-----------RVRPPATGAASADRILA-AKLRVVRRL 386
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
R H G+ +V A L + A L PM+ G T ER + AF+ ++ +
Sbjct: 387 ARRHA---GEPTLVVAHRLIEVAAAARALGVPMVTGQTPAAERRALYDAFRRG-EIRCLA 442
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
LS+V + +D+P+A V+IQIS GSR++EAQRLGR+LR K + A FY
Sbjct: 443 LSRVANVGVDLPDAAVLIQISGAFGSRQEEAQRLGRLLRPK----------ESGRRAVFY 492
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
SLV T+E+ ++ +RQ+FL+DQGY ++V+
Sbjct: 493 SLVVPGTREVEFAARRQRFLVDQGYRYRVV 522
>gi|359689912|ref|ZP_09259913.1| ATP-dependent DNA helicase [Leptospira licerasiae serovar Varillal
str. MMD0835]
gi|418749034|ref|ZP_13305326.1| type III restriction enzyme, res subunit [Leptospira licerasiae
str. MMD4847]
gi|404276103|gb|EJZ43417.1| type III restriction enzyme, res subunit [Leptospira licerasiae
str. MMD4847]
Length = 552
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 199 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWKNEILDKTDIPESDIGEYSGEVKEI 258
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 259 ----KPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 312
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 313 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 372
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
Y + ++K L NP K +A +++ H + ++V + L E + +
Sbjct: 373 RMRY-SIADDREKFRLASENPEKLKAIGMIMKKHSESH---LLVIGQYINQLEEISKTFK 428
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER ++ AF+ R + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 429 IPLITGKTPLGERQELYDAFRSGR-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 487
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG E+ A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 488 AQRLGRILRPKG----------EDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 537
Query: 410 T 410
T
Sbjct: 538 T 538
>gi|325971054|ref|YP_004247245.1| type III restriction protein res subunit [Sphaerochaeta globus str.
Buddy]
gi|324026292|gb|ADY13051.1| type III restriction protein res subunit [Sphaerochaeta globus str.
Buddy]
Length = 553
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/390 (33%), Positives = 215/390 (55%), Gaps = 26/390 (6%)
Query: 21 KPHAQPRPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78
KP A RPYQ+ + + G+ G IVLPCG+GK++VG+ R+ L + TN
Sbjct: 183 KPFAV-RPYQQMAGDALLGDLGPGCGFGTIVLPCGSGKTVVGMHIMQRLCTRVLVVTTNV 241
Query: 79 VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKII 138
+V QW + +T+ DQ+ +T KE + V TY ++ + + E +
Sbjct: 242 AAVHQWMQEILDKTTLTIDQVGEYTGARKE----PKEITVCTYQVLTYRPDK-EGPFPHL 296
Query: 139 EEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198
E + +WGL++ DEVH++PA +F K+ + ++ ++GLTATL+RED R ++ L+GPK
Sbjct: 297 ELLTKSQWGLIIYDEVHMLPAPVF-KITAELQAVYRVGLTATLIREDGREDEVFSLVGPK 355
Query: 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEF 258
++ W++L + GFIA C E+ + +E Y N ++K + NP K +
Sbjct: 356 RFDVPWIELQQQGFIAEAYCHEIRLDLPQELEIPY-ALANKREKYRMASENPLKLEVVKD 414
Query: 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTI 318
L+ H D I++ L L A P+I G+T + +R ++ +AF+ D +
Sbjct: 415 LVSRHPD---DFILIIGQYLDQLAMIADAFGLPIITGSTPNAKREELYRAFR-DGDCRIL 470
Query: 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 378
+SKV + +ID+P+A+V IQ+S GSR +EAQRLGRILR K + ++FF
Sbjct: 471 VVSKVANFAIDLPDASVAIQVSGTFGSRSEEAQRLGRILRPKNR------------SSFF 518
Query: 379 YSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
YS+V+ + E ++ RQ+FL +QGYS+++
Sbjct: 519 YSVVTRYSNEEEFAANRQKFLAEQGYSYEI 548
>gi|254231169|ref|ZP_04924496.1| DNA helicase ercc3 [Mycobacterium tuberculosis C]
gi|124600228|gb|EAY59238.1| DNA helicase ercc3 [Mycobacterium tuberculosis C]
Length = 582
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 134/373 (35%), Positives = 207/373 (55%), Gaps = 26/373 (6%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 174 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 230
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ +R++ + +E +R
Sbjct: 231 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RRTKGEYRHLELFDSR 283
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 284 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 342
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 343 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 401
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 402 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 457
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 458 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 507
Query: 385 DTQEMFYSTKRQQ 397
D+ + Y+ RQ+
Sbjct: 508 DSVDAEYAAHRQR 520
>gi|449116951|ref|ZP_21753395.1| hypothetical protein HMPREF9726_01380 [Treponema denticola H-22]
gi|448952215|gb|EMB33019.1| hypothetical protein HMPREF9726_01380 [Treponema denticola H-22]
Length = 590
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 131/386 (33%), Positives = 211/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + S G+ A +G IVLPCG+GK++VG+ +K S L L N +V QW
Sbjct: 222 RDYQRDAASSFVGDKSAGTGFGTIVLPCGSGKTIVGMLTMSLLKTSTLILTPNVAAVYQW 281
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + I+D+ I + + KE V + TY ++ + ++ + + R R
Sbjct: 282 RRELLDKTNIKDEDIGLYMGEVKE----IRPVTIATYQVLTWR-PNTDAAFPHFKIFRER 336
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK ++ W
Sbjct: 337 AWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLVREDGCEGDVFSLVGPKRFDVPW 395
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL + G+IA C E+ + EY +++K + NP K + L+ H+
Sbjct: 396 KDLEQKGWIAKAYCTEIRVNIAPSKEIEYAVG-TTREKHRIASENPAKLEIVKKLLTKHK 454
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++I++ L L A ++ P+I G ++ ER + +F+ ++N + +SKV
Sbjct: 455 E---NQILIIGQYLSQLETIAKEINAPLITGKNTNAERELLYDSFRKG-EINVLVVSKVA 510
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E ++ FYS+V+
Sbjct: 511 NFAIDLPDASVAIQVSGVFGSRQEEAQRLGRILRPK------------ECDSHFYSIVTR 558
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
T E ++ KRQ+FL +QGY + ++T
Sbjct: 559 QTIEEGFAEKRQKFLAEQGYDYSILT 584
>gi|384108565|ref|ZP_10009458.1| DNA or RNA helicases of superfamily II [Treponema sp. JC4]
gi|383869952|gb|EID85558.1| DNA or RNA helicases of superfamily II [Treponema sp. JC4]
Length = 594
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 134/391 (34%), Positives = 214/391 (54%), Gaps = 29/391 (7%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ + + G+ +G IVLPCGAGK++VG++ +K S L + TN +V QW
Sbjct: 225 REYQRGAARALVGDKGPGTGFGTIVLPCGAGKTVVGMTIMDMLKTSTLIITTNISAVHQW 284
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + DQI +T +SK + V V TY ++ + + E R
Sbjct: 285 IDELLDKTNLTADQIAEYTGESKTIKQ----VTVATYQVLTWRPDK-EGPYPHFSIFHER 339
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR V L ++ ++GLTATLVRED + L+GPK Y+ W
Sbjct: 340 PWGLIIYDEVHMLPAPVFRVVAEL-QAVRRVGLTATLVREDHCEGYVFSLVGPKRYDVPW 398
Query: 205 LDLVKGGFIANVQCAEVWC--PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
+L + +IA +C EV P+++E +Y ++K + N K E +I+
Sbjct: 399 KELERDHWIATAECIEVRIDLPVSQEI--DY-AVATVREKHKMASQNVEKLPVVEEIIKT 455
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H + DKI+V L L + A K+ P+I G ++ ER KI F+ + + + +SK
Sbjct: 456 HPE---DKILVIGQYLEQLDQIAKKIGAPIITGKVANAERDKIYADFRSGK-IRVLVVSK 511
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
V + +ID+P+A++ IQ+S GSR++EAQRLGRILR K E + FY+L+
Sbjct: 512 VANFAIDLPDASLAIQVSGTFGSRQEEAQRLGRILRPK------------ERTSRFYTLI 559
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413
+ +T E + + RQ+FL +QGY ++++ P
Sbjct: 560 TRNTVEEEFGSNRQKFLAEQGYQYRIVRYSP 590
>gi|374315062|ref|YP_005061490.1| DNA/RNA helicase [Sphaerochaeta pleomorpha str. Grapes]
gi|359350706|gb|AEV28480.1| DNA/RNA helicase, superfamily II [Sphaerochaeta pleomorpha str.
Grapes]
Length = 553
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/384 (32%), Positives = 213/384 (55%), Gaps = 25/384 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
RPYQ ++ + G+ G IVLPCG+GK++VG++ ++K L + TN +V QW
Sbjct: 188 RPYQTQAAQALLGDQGPGCGYGTIVLPCGSGKTVVGMTIMSQLKTRTLIVTTNVAAVHQW 247
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ T+ QI +T + K+ V V TY ++ + + + E +
Sbjct: 248 ISEILDKMTLTQQQIGEYTGEKKDPRE----VTVCTYQVLTYRPDKDGPFPHL-ELLTKG 302
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +F K+ + ++ ++GLTATLVRED R ++ L+GPK ++ W
Sbjct: 303 QWGLIIYDEVHMLPAPVF-KITAELQAVYRVGLTATLVREDGREDEVFSLVGPKRFDVPW 361
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + GFIA C+E+ + + Y N ++K + NP K + L+ H
Sbjct: 362 NELQQQGFIATAYCSEIRLDLPTDMEIPY-AIANKREKYRIASENPLKLDVVKGLVARHP 420
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D I++ + L A + + P+I G+T + +R ++ +AFK + + + +SKV
Sbjct: 421 D---DYILIIGQYIKQLESIAAEFKLPIITGSTPNAKREELYRAFK-EGESHILVVSKVA 476
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR +EAQRLGRILR K + ++FFYS+V+
Sbjct: 477 NFAIDLPDASVAIQVSGTFGSRSEEAQRLGRILRPKNR------------SSFFYSVVTR 524
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
+ E ++ RQ+FL +QGYS+ +
Sbjct: 525 YSTEEEFAANRQKFLAEQGYSYDI 548
>gi|410941403|ref|ZP_11373202.1| type III restriction enzyme, res subunit [Leptospira noguchii str.
2006001870]
gi|410783962|gb|EKR72954.1| type III restriction enzyme, res subunit [Leptospira noguchii str.
2006001870]
Length = 569
Score = 208 bits (529), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFGANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSLVS DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLVSRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|421099792|ref|ZP_15560436.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
gi|410797216|gb|EKR99331.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200901122]
Length = 569
Score = 207 bits (528), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|398339178|ref|ZP_10523881.1| DNA or RNA helicase [Leptospira kirschneri serovar Bim str. 1051]
gi|418677043|ref|ZP_13238321.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|418688262|ref|ZP_13249418.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|418696605|ref|ZP_13257614.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H1]
gi|418739738|ref|ZP_13296119.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
gi|421090818|ref|ZP_15551608.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 200802841]
gi|421132341|ref|ZP_15592509.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 2008720114]
gi|400322943|gb|EJO70799.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. RM52]
gi|409956134|gb|EKO15066.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H1]
gi|410000404|gb|EKO51034.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 200802841]
gi|410356106|gb|EKP03463.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. 2008720114]
gi|410737119|gb|EKQ81861.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Grippotyphosa str. Moskva]
gi|410752860|gb|EKR09832.1| type III restriction enzyme, res subunit [Leptospira kirschneri
serovar Valbuzzi str. 200702274]
Length = 569
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFGANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|330836652|ref|YP_004411293.1| helicase [Sphaerochaeta coccoides DSM 17374]
gi|329748555|gb|AEC01911.1| helicase domain protein [Sphaerochaeta coccoides DSM 17374]
Length = 555
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 130/384 (33%), Positives = 205/384 (53%), Gaps = 25/384 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQE + + G+ +G IVLPCGAGK++VG+ ++ L L TN +V QW
Sbjct: 190 RDYQEAAARSLLGDRGPGTGYGTIVLPCGAGKTIVGMDVMSLLQIRTLILTTNVSAVHQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ I + + +T KE V V TY +V + + E + +R
Sbjct: 250 IREILDKMDIPPEDVGEYTGAKKE----IKPVTVCTYQVVTWRPDK-EGVFPHMSLLREG 304
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +F+ L H ++GLTATL+RED R ++ L+GPK ++ W
Sbjct: 305 NWGLIIYDEVHMLPAPVFKVTAELQAVH-RVGLTATLIREDGREDEVFSLVGPKRFDVPW 363
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
++ K G+IA C EV P+ + Y ++K + NP K + L+ H
Sbjct: 364 SEMEKQGWIARAYCIEVKVPLPHDLELTY-AIAGKREKHRVASENPIKMDVLDELLSRHA 422
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D I++ + L + A K P+I G+T++ R + AF+ + + +SKV
Sbjct: 423 D---DYILIIGQYVDQLKQIARKYGFPLITGSTANTRRDDLYAAFRSGGE-RVLVVSKVA 478
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A++ IQ+S GSR++EAQRLGRILR K K ++FFYSLV+
Sbjct: 479 NFAIDLPDASIAIQVSGTFGSRQEEAQRLGRILRPKAK------------SSFFYSLVTR 526
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKV 408
+ E +S RQ+FL +QGY++K+
Sbjct: 527 YSSEEEFSENRQKFLAEQGYTYKI 550
>gi|418747212|ref|ZP_13303522.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. CBC379]
gi|418755555|ref|ZP_13311752.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. MOR084]
gi|421110258|ref|ZP_15570759.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. JET]
gi|422003710|ref|ZP_16350938.1| superfamily II DNA/RNA helicase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|409964017|gb|EKO31916.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. MOR084]
gi|410792006|gb|EKR89951.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. CBC379]
gi|410804443|gb|EKS10560.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. JET]
gi|417257680|gb|EKT87077.1| superfamily II DNA/RNA helicase [Leptospira santarosai serovar
Shermani str. LT 821]
gi|456876697|gb|EMF91776.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. ST188]
Length = 569
Score = 207 bits (528), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ S + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFR-SGQIKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|398337001|ref|ZP_10521706.1| superfamily II DNA/RNA helicase [Leptospira kmetyi serovar Malaysia
str. Bejo-Iso9]
Length = 569
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMDDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|410451517|ref|ZP_11305520.1| type III restriction enzyme, res subunit [Leptospira sp. Fiocruz
LV3954]
gi|410014561|gb|EKO76690.1| type III restriction enzyme, res subunit [Leptospira sp. Fiocruz
LV3954]
Length = 569
Score = 207 bits (528), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISRKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ S + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFR-SGQIKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|359686072|ref|ZP_09256073.1| superfamily II DNA/RNA helicase [Leptospira santarosai str.
2000030832]
Length = 557
Score = 207 bits (527), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 199 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 258
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 259 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 312
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 313 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 372
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 373 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 428
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ S + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 429 IPLITGKTPLPERQTLYDAFR-SGQIKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 487
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 488 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 537
Query: 410 T 410
T
Sbjct: 538 T 538
>gi|398332789|ref|ZP_10517494.1| superfamily II DNA/RNA helicase [Leptospira alexanderi serovar
Manhao 3 str. L 60]
Length = 569
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + +F+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDSFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|359726479|ref|ZP_09265175.1| superfamily II DNA/RNA helicase [Leptospira weilii str. 2006001855]
Length = 557
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 199 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 258
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 259 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 312
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 313 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 372
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 373 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 428
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + +F+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 429 IPLITGKTPLPERQTLYDSFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 487
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 488 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 537
Query: 410 T 410
T
Sbjct: 538 T 538
>gi|417780597|ref|ZP_12428358.1| type III restriction enzyme, res subunit [Leptospira weilii str.
2006001853]
gi|410779306|gb|EKR63923.1| type III restriction enzyme, res subunit [Leptospira weilii str.
2006001853]
gi|456865570|gb|EMF83904.1| type III restriction enzyme, res subunit [Leptospira weilii serovar
Topaz str. LT2116]
Length = 569
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVSMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + +F+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDSFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|390566548|ref|ZP_10246916.1| Type III restriction protein res subunit [Nitrolancetus hollandicus
Lb]
gi|390170199|emb|CCF86268.1| Type III restriction protein res subunit [Nitrolancetus hollandicus
Lb]
Length = 529
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 128/394 (32%), Positives = 206/394 (52%), Gaps = 37/394 (9%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L +L+P + RPYQ +++ + G + G+++LPCGAGK++VG++AA R+K L +
Sbjct: 165 LPFDLRPEVRLRPYQVEAVERFVERGES-GGVVLLPCGAGKTVVGIAAAARLKARTLIVT 223
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE 135
+ +QW +T+ ++ + + R V + TY + R+
Sbjct: 224 PSRTIAEQWHRHLLDLTTLSRAEVGFYNAR-----RSLTPVTIVTYQALT---SRANGRA 275
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
+ + + WGL++ DEVH +PA +FR +L +S +LGLTATL+RED R D L+
Sbjct: 276 ANLANLVDFPWGLVIYDEVHSLPADVFRSSAAL-QSRRRLGLTATLIREDGRERDAFSLV 334
Query: 196 GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255
GP +Y W L G+IA V C EV +E + + E + K R
Sbjct: 335 GPPVYSVPWRLLEHHGWIAPVDCVEVRVRPARE---QPVTPER---------LLAAKLRV 382
Query: 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDL 315
L H R + ++V A L + + L P+I G T ER + AF+ S +
Sbjct: 383 LRVLAARH---RDEPLLVIAHRLIEVAAASRALDAPVITGQTPASERRALYDAFR-SGEH 438
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375
+ LS+V + +D+P+A V++Q+S GSR++EAQR+GR+LR K+
Sbjct: 439 RCLALSRVANAGVDLPDAAVLVQVSGAFGSRQEEAQRVGRLLRP-----------KQGSR 487
Query: 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
A FYSLV+ T+E ++ +RQ+FLIDQGY ++V+
Sbjct: 488 ATFYSLVAAGTRETEFAGRRQRFLIDQGYRYQVV 521
>gi|418719290|ref|ZP_13278490.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|418738713|ref|ZP_13295106.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
gi|421094322|ref|ZP_15555042.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410363048|gb|EKP14081.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. 200801926]
gi|410744443|gb|EKQ93184.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
str. UI 09149]
gi|410745411|gb|EKQ98321.1| type III restriction enzyme, res subunit [Leptospira borgpetersenii
serovar Castellonis str. 200801910]
Length = 569
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 195/361 (54%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + +F+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDSFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|257457572|ref|ZP_05622739.1| helicase domain protein [Treponema vincentii ATCC 35580]
gi|257444958|gb|EEV20034.1| helicase domain protein [Treponema vincentii ATCC 35580]
Length = 614
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/386 (34%), Positives = 205/386 (53%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ GN +G IVLPCGAGK++VG+ + L L TN +V QW
Sbjct: 236 RDYQREAAEAFTGNKGPGTGFGTIVLPCGAGKTIVGMLVMSMLNTDTLILTTNTAAVHQW 295
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + D I ++S++KE V V TY ++ + E + R R
Sbjct: 296 KRELIDKTELDPDSIGIYSSETKE----IKPVTVATYQILTWRPDIEAEFPHF-KLFRER 350
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L +LGLTATL+RED D+ L+GPK Y+ W
Sbjct: 351 NWGLIIYDEVHLLPAPVFRITAELQVIR-RLGLTATLIREDGCEGDVFSLVGPKRYDVPW 409
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L + G+IA+ C E+ P+ EY ++K + N K L+ H
Sbjct: 410 KELEEKGWIAHAYCTEIRIPLPVSKEIEY-AAAPLREKHRIASENEAKNDIVRQLLARHT 468
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
D+I++ + L + A + P+I G T + ER + AF+ D++ + +SKV
Sbjct: 469 D---DQILIIGQYITQLKKIADAVHAPLITGKTPNAEREVLYDAFRAG-DISVLVVSKVA 524
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQIS GSR++EAQRLGRILR K E ++FFY+LV+
Sbjct: 525 NFAIDLPDASVAIQISGTFGSRQEEAQRLGRILRPK------------ERDSFFYTLVTR 572
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVIT 410
+ E + RQ+FL +QGY++ +IT
Sbjct: 573 HSVEEECADHRQKFLAEQGYAYSLIT 598
>gi|300870216|ref|YP_003785087.1| putative DNA repair helicase [Brachyspira pilosicoli 95/1000]
gi|404475446|ref|YP_006706877.1| DNA repair helicase [Brachyspira pilosicoli B2904]
gi|431806738|ref|YP_007233636.1| DNA repair helicase [Brachyspira pilosicoli P43/6/78]
gi|434382657|ref|YP_006704440.1| putative DNA repair helicase [Brachyspira pilosicoli WesB]
gi|300687915|gb|ADK30586.1| putative DNA repair helicase [Brachyspira pilosicoli 95/1000]
gi|404431306|emb|CCG57352.1| putative DNA repair helicase [Brachyspira pilosicoli WesB]
gi|404436935|gb|AFR70129.1| putative DNA repair helicase [Brachyspira pilosicoli B2904]
gi|430780097|gb|AGA65381.1| putative DNA repair helicase [Brachyspira pilosicoli P43/6/78]
Length = 565
Score = 206 bits (525), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 214/386 (55%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ ++ + NGR +G+I LPCG GK++VG++A +++ L + T + QW
Sbjct: 190 REYQLNAIEAFYANGRPEGGAGVIALPCGTGKTVVGIAAMSKMQTKTLIIVTGVTACRQW 249
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRN 143
+ + I + I + +KE + + TY ++ + ++ +ES + E
Sbjct: 250 RDEILDKTDIPKEDIGEYNGLNKEI----KPITIATYKILTY--RKDKESPFVHFELFFK 303
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA + K+ S +S +LGLTATLVRED D+ LIGPK ++
Sbjct: 304 HNWGLIIYDEVHLLPAPII-KLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDMP 362
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + FIA C ++ P+ E ++Y+ S K + + N + E + +
Sbjct: 363 WRELEEKKFIAEAYCYDLRIPLDNEQRADYVV---SSDKVKFRIASENILK-YEIVKKII 418
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
++ G I++ L L E + +I G T ER +I + FK S ++ + +SKV
Sbjct: 419 KKLEGKNILIIGQYLNQLNEMKRQTGYTIITGKTPQAERDEIYKKFK-SGEIKILIVSKV 477
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+ANV+IQIS GSR++EAQRLGR+LR K K E ++F+S+++
Sbjct: 478 ANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPK----------KGENKSYFFSVIT 527
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
+DT+E +S KRQ FL +QGY ++++
Sbjct: 528 SDTKEEDFSHKRQLFLTEQGYHYELL 553
>gi|116328103|ref|YP_797823.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331444|ref|YP_801162.1| superfamily II DNA/RNA helicase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120847|gb|ABJ78890.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
serovar Hardjo-bovis str. L550]
gi|116125133|gb|ABJ76404.1| DNA or RNA helicase of superfamily II [Leptospira borgpetersenii
serovar Hardjo-bovis str. JB197]
Length = 569
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 124/361 (34%), Positives = 194/361 (53%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A + ++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIDLIMEKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + +F+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDSFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|418733506|ref|ZP_13290630.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12758]
gi|410773115|gb|EKR53146.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12758]
Length = 569
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFGANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIGLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|24214829|ref|NP_712310.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
gi|45657657|ref|YP_001743.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|386074191|ref|YP_005988508.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|417761127|ref|ZP_12409141.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000624]
gi|417763892|ref|ZP_12411865.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|417768573|ref|ZP_12416501.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Pomona]
gi|417775460|ref|ZP_12423313.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000621]
gi|417783096|ref|ZP_12430819.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. C10069]
gi|418667771|ref|ZP_13229176.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|418672678|ref|ZP_13234014.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000623]
gi|418681222|ref|ZP_13242455.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|418692365|ref|ZP_13253443.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. FPW2026]
gi|418701013|ref|ZP_13261948.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bataviae str. L1111]
gi|418703992|ref|ZP_13264873.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|418711136|ref|ZP_13271902.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|418715905|ref|ZP_13275992.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 08452]
gi|418726410|ref|ZP_13285021.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12621]
gi|421085986|ref|ZP_15546837.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. HAI1594]
gi|421102319|ref|ZP_15562923.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|421107529|ref|ZP_15568081.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H2]
gi|421116845|ref|ZP_15577220.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|421120579|ref|ZP_15580890.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. Brem 329]
gi|421124173|ref|ZP_15584443.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|421134687|ref|ZP_15594820.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|24195842|gb|AAN49328.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. 56601]
gi|45600897|gb|AAS70380.1| ATP-dependent DNA helicase [Leptospira interrogans serovar
Copenhageni str. Fiocruz L1-130]
gi|353457980|gb|AER02525.1| DNA or RNA helicase [Leptospira interrogans serovar Lai str. IPAV]
gi|400327043|gb|EJO79299.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Kennewicki LC82-25]
gi|400353724|gb|EJP05877.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bulgarica str. Mallika]
gi|400357598|gb|EJP13718.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. FPW2026]
gi|409943121|gb|EKN88724.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000624]
gi|409949546|gb|EKN99522.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Pomona]
gi|409953797|gb|EKO08293.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. C10069]
gi|409960320|gb|EKO24074.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 12621]
gi|410007545|gb|EKO61255.1| type III restriction enzyme, res subunit [Leptospira kirschneri
str. H2]
gi|410011655|gb|EKO69771.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. Fiocruz LV133]
gi|410021271|gb|EKO88063.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. Andaman]
gi|410346693|gb|EKO97663.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. Brem 329]
gi|410367433|gb|EKP22817.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Icterohaemorrhagiae str. Verdun LP]
gi|410431551|gb|EKP75911.1| type III restriction enzyme, res subunit [Leptospira santarosai
str. HAI1594]
gi|410438660|gb|EKP87746.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. 2006006986]
gi|410574785|gb|EKQ37814.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000621]
gi|410580366|gb|EKQ48191.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. 2002000623]
gi|410756216|gb|EKR17841.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pyrogenes str. 2006006960]
gi|410759911|gb|EKR26113.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Bataviae str. L1111]
gi|410766360|gb|EKR37046.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Hebdomadis str. R499]
gi|410768736|gb|EKR43983.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. UI 08368]
gi|410788133|gb|EKR81859.1| type III restriction enzyme, res subunit [Leptospira interrogans
str. UI 08452]
gi|455669031|gb|EMF34199.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Pomona str. Fox 32256]
gi|455789603|gb|EMF41524.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Lora str. TE 1992]
gi|456821496|gb|EMF70002.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Canicola str. LT1962]
gi|456970563|gb|EMG11328.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Grippotyphosa str. LT2186]
gi|456984533|gb|EMG20568.1| type III restriction enzyme, res subunit [Leptospira interrogans
serovar Copenhageni str. LT2050]
Length = 569
Score = 206 bits (523), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/361 (34%), Positives = 194/361 (53%), Gaps = 21/361 (5%)
Query: 50 LPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109
LPCGAGK++VG+ + L L TN +S+ QW + + I + I ++ + KE
Sbjct: 211 LPCGAGKTIVGIGVMQIVGAETLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI 270
Query: 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169
+ + TYN++ K+ + WGL++ DEVH++PA +FR + S
Sbjct: 271 ----RPITIATYNILTHRKKKGGDFTHF-HLFGANNWGLIVYDEVHLLPAPVFR-MTSEL 324
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
++ +LGLTATLVRED D+ LIGPK Y+ W +L +IA +C E+ M +
Sbjct: 325 QAKRRLGLTATLVREDGLEEDVFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDL 384
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
+Y + ++K L NP K +A +++ H + ++V + L E + K
Sbjct: 385 RLKY-SIADDREKFRLASENPEKMKAIGLIMKKHSESH---LLVIGQYINQLEEISKKFN 440
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G T ER + AF+ + + ++ +SKV + SID+P+AN+ IQ+S GSR++E
Sbjct: 441 IPLITGKTPLPERQTLYDAFRSGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEE 499
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
AQRLGRILR KG + A FYSL+S DT E + RQ FL +QGY +++
Sbjct: 500 AQRLGRILRPKG----------HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIY 549
Query: 410 T 410
T
Sbjct: 550 T 550
>gi|384209279|ref|YP_005594999.1| DNA or RNA helicase of superfamily II [Brachyspira intermedia
PWS/A]
gi|343386929|gb|AEM22419.1| DNA or RNA helicase of superfamily II [Brachyspira intermedia
PWS/A]
Length = 564
Score = 205 bits (521), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 126/386 (32%), Positives = 211/386 (54%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ S+ + +G+ +G+I LPCG GK++VG++A + + L + T + QW
Sbjct: 189 RDYQRNSVDAFYADGKPEGGAGVIALPCGTGKTVVGIAAMHKTQTKTLIIVTGVTACRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRN 143
+ + I + I + +KE + + TY ++ + ++++ES + E
Sbjct: 249 RDEILDKTDIPPEDIGEYNGLNKEI----KPITIATYKILTY--RKNKESPFVHFELFFQ 302
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA + K+ S +S +LGLTATLVRED D+ LIGPK ++
Sbjct: 303 HNWGLIIYDEVHLLPAPII-KLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIP 361
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + FIA C ++ P+ S+Y+ S K + + N F+ + +
Sbjct: 362 WRELEEKKFIAEAYCYDIRIPLDDSHRSDYVV---SSDKVKFRIASENVFKYT-IVKKII 417
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E+ G I++ L L E + +I G T ER I + FK ++ + +SKV
Sbjct: 418 EKLEGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQSERDIIYKKFKTG-EIKILIVSKV 476
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+ANV+IQIS GSR++EAQRLGR+LR K K E ++F+S+++
Sbjct: 477 ANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPK----------KGENKSYFFSIIT 526
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
TDT+E ++ KRQ FL +QGY ++++
Sbjct: 527 TDTKEEDFAHKRQLFLTEQGYHYELL 552
>gi|445063350|ref|ZP_21375562.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30599]
gi|444505257|gb|ELV05807.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30599]
Length = 564
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ S+ + +G+ +G+I LPCG GK++VG++A + + L + T + QW
Sbjct: 189 RDYQKNSVDAFYADGKPEGGAGVIALPCGTGKTIVGIAAMHKTQTKTLIIVTGVTACRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRN 143
+ + I + I + +KE + + TY ++ + ++++ES + E
Sbjct: 249 RDEILDKTDIPPEDIGEYNGLNKEI----KPITIATYKILTY--RKNKESPFVHFELFFQ 302
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA + K+ S +S +LGLTATLVRED D+ LIGPK ++
Sbjct: 303 HNWGLIIYDEVHLLPAPII-KLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIP 361
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + FIA C ++ P+ S+Y+ + K K + N K+R + +I
Sbjct: 362 WRELEEKKFIAEAYCYDIRIPLDDSHRSDYVVSSD-KVKFRIASENILKYRVVKKII--- 417
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E+ G I++ L L E +I G T ER I + FK ++ + +SKV
Sbjct: 418 EKLEGKNILIIGQYLDQLNEMKRLTGYTIITGKTPQSERDIIYKKFKTG-EIKILIVSKV 476
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+ANV+IQIS GSR++EAQRLGR+LR K K E ++F+S+++
Sbjct: 477 ANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPK----------KGENKSYFFSIIT 526
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
TDT+E ++ KRQ FL +QGY ++++
Sbjct: 527 TDTKEEDFAHKRQLFLTEQGYHYELL 552
>gi|296127753|ref|YP_003635005.1| helicase domain-containing protein [Brachyspira murdochii DSM
12563]
gi|296019569|gb|ADG72806.1| helicase domain protein [Brachyspira murdochii DSM 12563]
Length = 564
Score = 204 bits (520), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 215/386 (55%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ S+ + +G+ +G+I LPCG GK++VG++A + + L + T + QW
Sbjct: 189 RDYQKNSVEAFYADGKPEGGAGVIALPCGTGKTVVGIAAMYKTQTRTLIIVTGVTACRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRN 143
+ + I + I + +KE + + TY ++ + ++++ES + E
Sbjct: 249 RDEILDKTDIPPEDIGEYNGLNKEI----KPITIATYKILTY--RKNKESPFVHFELFFQ 302
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA + K+ S +S +LGLTATLVRED D+ LIGPK ++
Sbjct: 303 YNWGLIIYDEVHLLPAPII-KLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIP 361
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + FIA C ++ P+ + S+Y+ + K K + N K+ + +I
Sbjct: 362 WRELEEKKFIAEAYCYDIRIPLDESHRSDYVVSSD-KVKFRIASENVLKYTVVKKII--- 417
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E+ +G I++ L L E + +I G T ER I + FK ++ + +SKV
Sbjct: 418 EKLQGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQAERDIIYKKFKTG-EIKILIVSKV 476
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+ANV+IQIS GSR++EAQRLGR+LR K K E ++F+S+++
Sbjct: 477 ANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPK----------KGENKSYFFSIIT 526
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
TDT+E ++ KRQ FL +QGY ++++
Sbjct: 527 TDTKEEDFAHKRQLFLTEQGYHYELL 552
>gi|225619690|ref|YP_002720947.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
WA1]
gi|225214509|gb|ACN83243.1| DNA or RNA helicase of superfamily II [Brachyspira hyodysenteriae
WA1]
Length = 564
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ S+ + +G+ +G+I LPCG GK++VG++A + + L + T + QW
Sbjct: 189 RDYQKNSVDAFYADGKPEGGAGVIALPCGTGKTVVGIAAMHKTQTKTLIIVTGVTACRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRN 143
+ + I + I + +KE + + TY ++ + ++++ES + E
Sbjct: 249 RDEILDKTDIPPEDIGEYNGLNKEI----KPITIATYKILTY--RKNKESPFVHFELFFQ 302
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA + K+ S +S +LGLTATLVRED D+ LIGPK ++
Sbjct: 303 HNWGLIIYDEVHLLPAPII-KLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIP 361
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + FIA C ++ P+ S+Y+ + K K + N K+ + +I
Sbjct: 362 WRELEEKKFIAEAYCYDIRIPLDDSHRSDYVISSD-KVKFRIASENVLKYTIVKKII--- 417
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E+ G I++ L L E + +I G T ER I + FK ++ + +SKV
Sbjct: 418 EKLEGKNILIIGQYLDQLNEMKKRTGYTIITGKTPQSERDVIYKKFKTG-EIKILIVSKV 476
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+ANV+IQIS GSR++EAQRLGR+LR K K E ++F+S+++
Sbjct: 477 ANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPK----------KGENKSYFFSIIT 526
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
TDT+E ++ KRQ FL +QGY ++++
Sbjct: 527 TDTKEEDFAHKRQLFLTEQGYHYELL 552
>gi|403251986|ref|ZP_10918301.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
gi|402914731|gb|EJX35739.1| DNA/RNA helicase, superfamily II [actinobacterium SCGC AAA027-L06]
Length = 547
Score = 203 bits (516), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 132/385 (34%), Positives = 204/385 (52%), Gaps = 26/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE + + G SG++VLPCGAGK++VG +A K + L L TN V+ QW
Sbjct: 183 RKYQELAAEGFWHGG---SGVVVLPCGAGKTIVGAAAMAHAKATTLILVTNTVAARQWRD 239
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + + +D I ++ KE V + TY ++ K + + I +W
Sbjct: 240 ELLRRTDLNEDDIGEYSGAKKE----IRPVTIATYQVMTTRKKGVYAHLDLFDAI---DW 292
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH++PA +FR + +S +LGLTATLVRED ++ LIGPK ++ W +
Sbjct: 293 GLIIYDEVHLLPAPIFRFTADI-QSRRRLGLTATLVREDGMEGEVFSLIGPKRFDVPWKE 351
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
+ G+IA C EV +T Y E + + K E + +Q
Sbjct: 352 IEAQGYIAPADCVEVRITLTDAERLNYATAEQEDRYRFCSTSQTKK----EVAVALAKQH 407
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
D+++V + L + + L P+I G T ER ++ F+ +L + +SKV +
Sbjct: 408 ANDQVLVIGQYIDQLDQLSEALGVPVIKGDTPIKERERLYALFRTG-ELKCLVVSKVANF 466
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
SID+PEA + IQ+S GSR++EAQRLGRILR K A G+ A FYSLV+ DT
Sbjct: 467 SIDLPEATIAIQVSGTFGSRQEEAQRLGRILRPK-------ADGR---GARFYSLVARDT 516
Query: 387 QEMFYSTKRQQFLIDQGYSFKVITS 411
+ ++ RQ+FL +QGY++++I +
Sbjct: 517 IDQDFAQNRQRFLAEQGYAYRIIDA 541
>gi|429125100|ref|ZP_19185632.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30446]
gi|426279162|gb|EKV56189.1| DNA or RNA helicase of superfamily II [Brachyspira hampsonii 30446]
Length = 564
Score = 202 bits (515), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 25/386 (6%)
Query: 27 RPYQEKSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ S+ + +G+ +G+I LPCG GK++VG++A + + L + T + QW
Sbjct: 189 RDYQKNSVDAFYADGKPEGGAGVIALPCGTGKTVVGIAAMHKTQTKTLIIVTGVTACRQW 248
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRN 143
+ + I + I + +KE + + TY ++ + ++++ES + E
Sbjct: 249 RDEILDKTDIPPEDIGEYNGLNKEI----KPITIATYKILTY--RKNKESPFVHFELFFQ 302
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
WGL++ DEVH++PA + K+ S +S +LGLTATLVRED D+ LIGPK ++
Sbjct: 303 HNWGLIIYDEVHLLPAPII-KLTSEIQSMRRLGLTATLVREDGLEKDVFCLIGPKKFDIP 361
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W +L + FIA C ++ P+ S+Y+ + K K + N K++ + +I
Sbjct: 362 WRELEEKKFIAEAYCYDIRIPLDDSHRSDYVISSD-KVKFRIASENVLKYKIVKKII--- 417
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
E+ G I++ L L E +I G T ER I + FK ++ + +SKV
Sbjct: 418 EKLEGKNILIIGQYLDQLNEMKRLTGYTIITGKTPQSERDIIYKKFKTG-EIKILIVSKV 476
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
+ ++D+P+ANV+IQIS GSR++EAQRLGR+LR K K E ++F+S+++
Sbjct: 477 ANLAVDLPDANVLIQISGTFGSRQEEAQRLGRVLRPK----------KGENKSYFFSIIT 526
Query: 384 TDTQEMFYSTKRQQFLIDQGYSFKVI 409
TDT+E ++ KRQ FL +QGY ++++
Sbjct: 527 TDTKEEDFAHKRQLFLTEQGYHYELL 552
>gi|289568824|ref|ZP_06449051.1| DNA helicase ercc3 [Mycobacterium tuberculosis T17]
gi|289542578|gb|EFD46226.1| DNA helicase ercc3 [Mycobacterium tuberculosis T17]
Length = 510
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 130/362 (35%), Positives = 200/362 (55%), Gaps = 26/362 (7%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q R YQ + + G SG++VLPCGAGK+LVG +A + + L L TN V+ QW
Sbjct: 162 QLRDYQRLAADSFWAGG---SGVVVLPCGAGKTLVGAAAMAKAGATTLILVTNIVAARQW 218
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ +++ +++I F+ + KE V ++TY M+ + ++ + +E +R
Sbjct: 219 KRELVARTSLTENEIGEFSGERKE----IRPVTISTYQMIT---RHTKGEYRHLELFDSR 271
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L +S +LGLTATL+RED R D+ LIGPK Y+A W
Sbjct: 272 DWGLIIYDEVHLLPAPVFRMTADL-QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPW 330
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA +C EV MT Y E ++ + ++ K + ++ H
Sbjct: 331 KDIEAQGWIAPAECVEVRVTMTDSERMMYATAEPEERYRICSTVH-TKIAVVKSILAKHP 389
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + +V L L E +L P+I G+T ER + AF+ ++ T+ +SKV
Sbjct: 390 DE---QTLVIGAYLDQLDELGAELGAPVIQGSTRTSEREALFDAFRRG-EVATLVVSKVA 445
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ SID+PEA V +Q+S GSR++EAQRLGRILR K GG A FYS+V+
Sbjct: 446 NFSIDLPEAAVAVQVSGTFGSRQEEAQRLGRILRPKAD------GG----GAIFYSVVAR 495
Query: 385 DT 386
D+
Sbjct: 496 DS 497
>gi|376287275|ref|YP_005159841.1| putative ATP-dependent DNA helicase, partial [Corynebacterium
diphtheriae BH8]
gi|371584609|gb|AEX48274.1| putative ATP-dependent DNA helicase [Corynebacterium diphtheriae
BH8]
Length = 325
Score = 201 bits (511), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 122/340 (35%), Positives = 195/340 (57%), Gaps = 23/340 (6%)
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE 135
+N V+ QW + +T+ ++I ++ + KE + + TY +V ++++
Sbjct: 4 SNTVAGRQWRDELLRRTTLTPEEIGEYSGEKKE----IRPITIATYQVVT---RKTKGEY 56
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
+ +E +R+WGL++ DEVH++PA +FR + S +S +LGLTATLVRED R D+ LI
Sbjct: 57 RALELFDSRDWGLIIYDEVHLLPAPVFR-LTSDLQSRRRLGLTATLVREDGREGDVFSLI 115
Query: 196 GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255
GPK Y+A W DL GFIA +C EV M + Y EN + + L +K RA
Sbjct: 116 GPKRYDAPWKDLETQGFIATAECTEVRTTMAESERMVYATAENQDRYR-LAACAASKLRA 174
Query: 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDL 315
+ L+ H Q I + D L + E +L P++ G+TS+ +R ++ AF+ ++
Sbjct: 175 VDKLVAQHAGQPTLIIGAYVDQLAEIGE---RLHTPVVDGSTSNKKREELFSAFRNG-EI 230
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375
T+ +SKV + SID+PEA V IQ+S GSR++EAQRLGR+LR K + +
Sbjct: 231 TTLVVSKVANFSIDLPEAAVAIQVSGTFGSRQEEAQRLGRLLRPKA----------DGAH 280
Query: 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPP 415
A FY++VS D+ + Y+ RQ+FL +QGY++++I + P
Sbjct: 281 AHFYTVVSRDSLDSDYAAHRQRFLAEQGYAYRIIDAADLP 320
>gi|328949357|ref|YP_004366694.1| helicase [Treponema succinifaciens DSM 2489]
gi|328449681|gb|AEB15397.1| helicase domain protein [Treponema succinifaciens DSM 2489]
Length = 595
Score = 201 bits (511), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 130/385 (33%), Positives = 207/385 (53%), Gaps = 25/385 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGI--IVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
R YQ+ + + + GN +G IVLPCGAGK++VG+ +K + L + TN +V QW
Sbjct: 212 REYQKAAANALVGNKGPGTGFGTIVLPCGAGKTIVGMEIMSLLKTNTLIVTTNITAVHQW 271
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ + + QI +T ++K V V TY ++ + ++ R
Sbjct: 272 IDELIDKTDLDASQIAEYTGENKTI----KPVTVATYQILTWRPDKNGPYPHF-SLFRQN 326
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
WGL++ DEVH++PA +FR L ++GLTATLVRED ++ L+GPK Y+ W
Sbjct: 327 NWGLVIYDEVHMIPAPVFRVAAELQAVR-RVGLTATLVREDGCEGNVFSLVGPKRYDVPW 385
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
+L K +IA +C EV + + EY N ++K + NP K + + L+ E
Sbjct: 386 KELEKAKWIAKAECIEVRLGLPENKEIEYAVAAN-REKHRIASENPLKNKIVQELV---E 441
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ + DKI++ L L A L P+I G T + ER I F+ + + + +SKV
Sbjct: 442 KFKDDKILIIGQFLTHLEIIAKLLNVPIITGKTKNSERDIIYDDFRSGK-IRVLVVSKVA 500
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
+ +ID+P+A+V IQ+S GSR++EAQRLGRILR K E + F++L++
Sbjct: 501 NFAIDLPDASVAIQVSGTFGSRQEEAQRLGRILRPK------------ERTSRFFTLITR 548
Query: 385 DTQEMFYSTKRQQFLIDQGYSFKVI 409
T E + + RQ+FL +QGYS++++
Sbjct: 549 GTVEEDFGSNRQKFLAEQGYSYRIV 573
>gi|15639371|ref|NP_218820.1| DNA repair helicase, [Treponema pallidum subsp. pallidum str.
Nichols]
gi|189025613|ref|YP_001933385.1| DNA repair helicase [Treponema pallidum subsp. pallidum SS14]
gi|378972887|ref|YP_005221491.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|378973954|ref|YP_005222560.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|378975016|ref|YP_005223624.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
DAL-1]
gi|378981863|ref|YP_005230168.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|384421904|ref|YP_005631263.1| DNA or RNA helicase of superfamily II [Treponema pallidum subsp.
pallidum str. Chicago]
gi|408502258|ref|YP_006869702.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
str. Mexico A]
gi|3322660|gb|AAC65366.1| DNA repair helicase, putative [Treponema pallidum subsp. pallidum
str. Nichols]
gi|189018188|gb|ACD70806.1| possible DNA repair helicase [Treponema pallidum subsp. pallidum
SS14]
gi|291059770|gb|ADD72505.1| DNA or RNA helicase of superfamily II [Treponema pallidum subsp.
pallidum str. Chicago]
gi|374677210|gb|AEZ57503.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. SamoaD]
gi|374678280|gb|AEZ58572.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. CDC2]
gi|374679349|gb|AEZ59640.1| putative DNA repair helicase [Treponema pallidum subsp. pertenue
str. Gauthier]
gi|374680414|gb|AEZ60704.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
DAL-1]
gi|408475621|gb|AFU66386.1| putative DNA repair helicase [Treponema pallidum subsp. pallidum
str. Mexico A]
Length = 606
Score = 197 bits (500), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 127/390 (32%), Positives = 200/390 (51%), Gaps = 25/390 (6%)
Query: 22 PHAQPRPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79
P PR YQ ++ GN SG ++VLPCGAGK++VG+ ++ L L N+
Sbjct: 233 PSFVPRDYQWEAADAFVGNRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSA 292
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIE 139
+ QW + + + I ++ + KE V + TY ++ + ++
Sbjct: 293 AAQQWKRELCEKTDLDGTSIGIYSGECKE----IRPVTIATYQILTWRAH-ADAPFSHFR 347
Query: 140 EIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199
R WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK
Sbjct: 348 LFMERSWGLIIYDEVHLLPAPLFRITAELQVVR-RLGLTATLVREDGCAQDVFSLVGPKR 406
Query: 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259
Y+ W DL G+IA V+C EV M + +Y+ + + L N K + L
Sbjct: 407 YDVPWKDLEARGWIARVRCVEVRVTMDRSLQYQYMTAP-VRLRHRLASENEAKVAVVQRL 465
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
+R H G ++ + L A L+ P++ G ++ R I Q F+ L +
Sbjct: 466 LRAHA---GAPTLIIGQYVQQLLHLAHVLQVPLVSGRQTYAAREAIYQRFR-EGTLQVLV 521
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+SKV + ++D+P+A+V IQ+S GSR++EAQRLGR+LR K +A FY
Sbjct: 522 VSKVANCALDLPDASVAIQVSGTFGSRQEEAQRLGRLLRPK------------ICDAHFY 569
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
SLV+ T E + +RQ+FL++QGY+++ +
Sbjct: 570 SLVTEQTVEEDCALRRQRFLVEQGYTYETL 599
>gi|338706347|ref|YP_004673115.1| putative DNA repair helicase [Treponema paraluiscuniculi Cuniculi
A]
gi|335344408|gb|AEH40324.1| probable DNA repair helicase [Treponema paraluiscuniculi Cuniculi
A]
Length = 606
Score = 196 bits (497), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 126/390 (32%), Positives = 200/390 (51%), Gaps = 25/390 (6%)
Query: 22 PHAQPRPYQEKSLSKMFGNGRARSG--IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79
P PR YQ ++ GN SG ++VLPCGAGK++VG+ ++ L L N+
Sbjct: 233 PSFVPRDYQWEAADAFVGNRTQGSGFGVVVLPCGAGKTVVGLLVMGLLQTDTLILTPNSA 292
Query: 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIE 139
+ QW + + + I ++ + KE V + TY ++ + ++
Sbjct: 293 AAQQWKRELCEKTDLDGTSIGIYSGECKE----IRPVTIATYQILTWRAH-ADAPFSHFR 347
Query: 140 EIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199
R WGL++ DEVH++PA +FR L +LGLTATLVRED D+ L+GPK
Sbjct: 348 LFMERSWGLIIYDEVHLLPAPLFRITAELQVVR-RLGLTATLVREDGCAQDVFSLVGPKR 406
Query: 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259
Y+ W DL G+IA V+C EV M + +Y+ + + L N K + L
Sbjct: 407 YDVPWKDLEARGWIARVRCVEVRVTMDQSLQYQYMTAP-VRLRHRLASENEAKVAVVQRL 465
Query: 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIF 319
+R H G ++ + L A L+ P++ G ++ R I Q F+ L +
Sbjct: 466 LRAHA---GAPTLIIGQYVQQLLHLAHVLQVPLVSGRQTYAAREAIYQRFR-EGTLQVLV 521
Query: 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379
+SKV + ++D+P+A+V IQ+S GSR++EAQRLGR+LR K +A FY
Sbjct: 522 VSKVANCALDLPDASVAIQVSGTFGSRQEEAQRLGRLLRPK------------ICDAHFY 569
Query: 380 SLVSTDTQEMFYSTKRQQFLIDQGYSFKVI 409
SL++ T E + +RQ+FL++QGY+++ +
Sbjct: 570 SLITEQTVEEDCALRRQRFLVEQGYTYETL 599
>gi|161899087|ref|XP_001712770.1| DNA repair and transcription protein [Bigelowiella natans]
gi|75756263|gb|ABA27158.1| DNA repair and transcription protein [Bigelowiella natans]
Length = 534
Score = 194 bits (493), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 125/412 (30%), Positives = 212/412 (51%), Gaps = 23/412 (5%)
Query: 13 NPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72
+ DLN+ L+P +QE K+ + +SG ++LPCG+GK+LVG+ K L
Sbjct: 117 SADLNLRLRPGVVLYDHQEFCKVKLCIDNTVKSGYLILPCGSGKTLVGILIMSYAKTVIL 176
Query: 73 CLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA---GVVVTTYNMVAFGGK 129
C+ N + ++QW Q W+ ++ + + +S K ++ N + ++TY +++F G
Sbjct: 177 CIVINFLMINQWKEQIFRWTYLKKECVIEISSYGKTNYQVNLQEHAIFLSTYKIISFKGI 236
Query: 130 RSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFRKVISLTKSHCKLGLTATLV 182
R ++ W L++ DE H++ +F ++I L S+ ++GLTA
Sbjct: 237 RKGLGVLFNKKFFFTNWDLIIFDECHLIRTLGLVKTFCIFYRLIKL-HSYGRVGLTAIFK 295
Query: 183 REDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC--PMTKEFFSEYLKKENSK 240
+ I + +IGPKL W L G I+ V+ E+ P+ + Y ++++
Sbjct: 296 LDHGGINYCDTIIGPKLVNVKWKQLTHSGSISFVKYYEILIDLPLMDQLI--YKNSKSNR 353
Query: 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHV 300
+K + MNPNK C +LI++ I++F D++ + L+ I G TS +
Sbjct: 354 EKFDIATMNPNKIEICRYLIKYFLYSIKFNILIFCDSIKLHNKIRKALKIDSISGKTSKI 413
Query: 301 ERTKILQAF-KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359
R K+++ F + N I SKVGD S+DIP AN+IIQISS GS QE QR+GRI+RA
Sbjct: 414 IREKLIKEFKANNNKNNAILFSKVGDTSVDIPNANLIIQISSDRGSSVQEIQRIGRIMRA 473
Query: 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS 411
+ + K+ + F +L+S +T E +YS KR+ L Q +S + + +
Sbjct: 474 -----NNLKSVKKY--SIFINLISKNTVEHYYSKKRKSLLARQDFSIETLKT 518
>gi|456887822|gb|EMF98835.1| helicase C-terminal domain protein [Leptospira borgpetersenii str.
200701203]
Length = 345
Score = 186 bits (471), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/340 (33%), Positives = 182/340 (53%), Gaps = 21/340 (6%)
Query: 71 CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKR 130
L L TN +S+ QW + + I + I ++ + KE + + TYN++ K+
Sbjct: 8 TLILVTNTLSIRQWRNEILDKTDIPPEDIGEYSGEVKEI----RPITIATYNILTHRKKK 63
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITD 190
+ WGL++ DEVH++PA +FR + S ++ +LGLTATLVRED D
Sbjct: 64 GGDFTHF-HLFSANNWGLIVYDEVHLLPAPVFR-MTSELQAKRRLGLTATLVREDGLEED 121
Query: 191 LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250
+ LIGPK Y+ W +L +IA +C E+ M + +Y + ++K L NP
Sbjct: 122 VFSLIGPKKYDVPWKELESKSWIAEAKCKEIRVNMEDDLRLKY-SIADDREKFRLASENP 180
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
K +A + +++ H + ++V + L E + K P+I G T ER + +F+
Sbjct: 181 EKMKAIDLIMKKHSESH---LLVIGQYINQLEEISKKFNIPLITGKTPLPERQTLYDSFR 237
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
+ + ++ +SKV + SID+P+AN+ IQ+S GSR++EAQRLGRILR KG
Sbjct: 238 SGK-IKSLVVSKVANFSIDLPDANIAIQVSGTFGSRQEEAQRLGRILRPKG--------- 287
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
+ A FYSL+S DT E + RQ FL +QGY +++ T
Sbjct: 288 -HDNTAVFYSLISRDTNEERFGQNRQLFLTEQGYEYEIYT 326
>gi|378756456|gb|EHY66480.1| DNA repair helicase rad25 [Nematocida sp. 1 ERTm2]
Length = 347
Score = 183 bits (465), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/149 (56%), Positives = 114/149 (76%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
++EEYDFR +N P L+++LK R YQE SL+KMFGNGRARSGIIVLPCGAGK+LVG
Sbjct: 184 LIEEYDFRTENTLPLLDIDLKSTTSIRTYQEFSLNKMFGNGRARSGIIVLPCGAGKTLVG 243
Query: 61 VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120
+ A C +K+SCL L T +VSV+QW Q K ++ ++D+ I TSD+KE+F G AG+VV+T
Sbjct: 244 IVALCTMKRSCLILCTTSVSVEQWKQQIKHFTNVKDESIAILTSDTKEKFTGQAGIVVST 303
Query: 121 YNMVAFGGKRSEESEKIIEEIRNREWGLL 149
Y MV++ GKRS E++KI++ + N + GLL
Sbjct: 304 YTMVSYSGKRSYETQKIMDFLTNTDGGLL 332
>gi|118361658|ref|XP_001014057.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89295824|gb|EAR93812.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 407
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 124/377 (32%), Positives = 195/377 (51%), Gaps = 60/377 (15%)
Query: 55 GKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK--ERFRG 112
G +L+G+ +IK + + + + QW +F +T++ D+I +T +K + +
Sbjct: 15 GMTLLGIIVTEKIKGNPIVICDIDTATKQWKNEFIRQTTVKPDRIKIYTGKTKNLQEKQT 74
Query: 113 NAGVVVTTYNMVAFGGKRSE-ESEK-----------------IIEEIRNREWGLLLMDEV 154
+++TT+ ++ K ++ + EK I EE+ EW L + DE
Sbjct: 75 KPFILITTFKQLSSIIKSNKLQKEKRQDMDTSSKYETKLDYYIQEEM---EWDLYIADET 131
Query: 155 HVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA 214
A ++K+ K+GLTAT RED +I DL +IGPKLYEAN +L++ ++A
Sbjct: 132 QYSAASTYKKIFEEFNFKLKIGLTATTYREDNKIYDLFHVIGPKLYEANISELIQDSYLA 191
Query: 215 NVQCA--EVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 272
C W S+K Q ++N + HE R DKI+
Sbjct: 192 KPYCVVFRFW---------------KSRKIQTFVLLN-----------QVHE-SRKDKIL 224
Query: 273 VFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332
VF D + L Y+ K+ P IYG +E+ L F+ ++NT+FLS+VGD ++D+P
Sbjct: 225 VFCDQIPVLKYYSQKMGYPAIYGEVGLLEKLVWLDLFRKG-EINTLFLSRVGDTALDLPI 283
Query: 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392
ANV IQI GS++QE QRLGRI+R R G K EYNAFFY++VS +T++ +
Sbjct: 284 ANVCIQIGFQFGSKKQEVQRLGRIMR-------RKEGQKGEYNAFFYTIVSKNTEQAQFY 336
Query: 393 TKRQQFLIDQGYSFKVI 409
+RQ+ L+D G +F+VI
Sbjct: 337 YRRQKSLMDLGINFEVI 353
>gi|349805511|gb|AEQ18228.1| putative excision repair cross-complementing rodent repair
complementation group [Hymenochirus curtipes]
Length = 136
Score = 182 bits (462), Expect = 4e-43, Method: Composition-based stats.
Identities = 81/119 (68%), Positives = 103/119 (86%), Gaps = 2/119 (1%)
Query: 162 FRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV 221
FR+V+++ ++HCKLGLTATLVRED++I DLNFLIGPKLYEANW++L G+IA VQCAEV
Sbjct: 20 FRRVLTIVQAHCKLGLTATLVREDDKIVDLNFLIGPKLYEANWMELQNNGYIAKVQCAEV 79
Query: 222 WCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA 280
WCPM+ EF+ EY+ + +KK+ LY +NPNKFRAC+FLI+FHE +R DKIIVFADN+FA
Sbjct: 80 WCPMSPEFYREYVAIK-TKKRILLYTVNPNKFRACQFLIKFHE-RRNDKIIVFADNVFA 136
>gi|385302855|gb|EIF46963.1| dna helicase [Dekkera bruxellensis AWRI1499]
Length = 211
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/189 (51%), Positives = 128/189 (67%), Gaps = 19/189 (10%)
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
ILQ F+ + +NTIFLSKVGD SID+PEA +IQISSH GSRRQEAQRLGRILRAK +
Sbjct: 3 ILQNFQYNEQVNTIFLSKVGDTSIDLPEATCLIQISSHYGSRRQEAQRLGRILRAKRR-- 60
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYH 424
E +NAFFYSLVS DTQEM+YSTKRQ FL+DQGY+FK+IT L ++ +L+Y
Sbjct: 61 -----NDEGFNAFFYSLVSKDTQEMYYSTKRQAFLVDQGYAFKIITHLNGMENLPNLAYS 115
Query: 425 RLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALH-----------KARRIAGSMSAMSG 473
E+ LL +VL ++A G+E L ED++++ H +A + S+S ++G
Sbjct: 116 TPKERRELLQEVLLKNEEAAGVE-LGEDSENLIGHGVSKRIKTSSSRAVKNQSSLSGLAG 174
Query: 474 AQGMVYMEY 482
+ M Y+EY
Sbjct: 175 GEDMAYVEY 183
>gi|399574209|ref|ZP_10767969.1| DNA/RNA helicase, superfamily ii [Halogranum salarium B-1]
gi|399240717|gb|EJN61641.1| DNA/RNA helicase, superfamily ii [Halogranum salarium B-1]
Length = 683
Score = 179 bits (453), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/395 (29%), Positives = 187/395 (47%), Gaps = 40/395 (10%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D ++ DL ++L R YQ + + RSG+ V P G+GK++ G+ +
Sbjct: 269 GDPLDIDLTIDL------RDYQRDWVDRF---EEQRSGVFVSPPGSGKTVAGIGVLAAVG 319
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +T+ +DQI + KE V ++TY
Sbjct: 320 GETLILVPSRELAAQWKQELLAHTTLTEDQIGEYHGGEKE----IRPVTISTYQTAGMDR 375
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R+ +R+WGL+L DEVH VP+ ++R+ L H +LGL+AT VRED+R
Sbjct: 376 HRAL--------FDSRKWGLILYDEVHHVPSRIYRRSADLQAKH-RLGLSATPVREDDRE 426
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
D+ LIGP + +W L GF+ + + P T + + + +++ L M
Sbjct: 427 KDIFTLIGPPIG-TDWDKLFDAGFVQEPEVEIRYVPWTDDMSLNEWRSADGRERHMLAAM 485
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K A E L+ H + K +VF D L + +L P I G H R ++ Q+
Sbjct: 486 NPAKLDAAERLLTQHPES---KALVFVDYLDQGRFFEEELDVPFISGEMPHYRREQLFQS 542
Query: 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368
F+ D+ T+ +S+VGD ID+P+A + I S GSRRQ AQR GR +R G
Sbjct: 543 FRDG-DIRTLVISRVGDEGIDLPDAELAIVASGLGGSRRQGAQRAGRTMRPTG------- 594
Query: 369 GGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
+A Y L + T E ++ ++ + L ++G
Sbjct: 595 ------SALVYVLATRGTSEEDFAQRQMRHLAEKG 623
>gi|302793636|ref|XP_002978583.1| hypothetical protein SELMODRAFT_108762 [Selaginella moellendorffii]
gi|300153932|gb|EFJ20569.1| hypothetical protein SELMODRAFT_108762 [Selaginella moellendorffii]
Length = 109
Score = 177 bits (449), Expect = 1e-41, Method: Composition-based stats.
Identities = 77/89 (86%), Positives = 86/89 (96%)
Query: 154 VHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI 213
VHVVPAHMF KVIS+TKSHCKLGLTATLVREDERI+DLNFL+GPKLY+ANWLDLVK G+I
Sbjct: 1 VHVVPAHMFHKVISITKSHCKLGLTATLVREDERISDLNFLVGPKLYQANWLDLVKCGYI 60
Query: 214 ANVQCAEVWCPMTKEFFSEYLKKENSKKK 242
ANVQCAEVWCPMTKEF++EYLKKEN K++
Sbjct: 61 ANVQCAEVWCPMTKEFYAEYLKKENRKQQ 89
>gi|163839247|ref|YP_001623652.1| DNA/RNA helicase [Renibacterium salmoninarum ATCC 33209]
gi|162952723|gb|ABY22238.1| DNA/RNA helicase (DEAD/DEAH box family) [Renibacterium salmoninarum
ATCC 33209]
Length = 394
Score = 175 bits (444), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 109/317 (34%), Positives = 174/317 (54%), Gaps = 20/317 (6%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ+ ++ + G SG++VLPCGAGK+LVG +A + L L TN VS QW
Sbjct: 76 RPYQKLAVENFWAGG---SGVVVLPCGAGKTLVGAAAMATSGTTTLILVTNTVSARQWKQ 132
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAF--GGKRSEESEKIIEEIRNR 144
+ +++ + +I ++ KE V + TY ++ GG +E +
Sbjct: 133 ELLKRTSLAEGEIGEYSGAMKE----VRPVTIATYQVLTMRRGGLYPH-----LELLDAN 183
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTA LVRED R ++ LIGPK Y+A W
Sbjct: 184 DWGLIVYDEVHLLPAPIFRMTAGL-QARRRLGLTAKLVREDGREGEVFSLIGPKRYDAPW 242
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
D+ G+IA C EV + K+ Y E++ K + L + +K E L+ H
Sbjct: 243 KDIEAQGYIAPADCVEVRVDLPKDERMAYAMAEDADKYR-LCATSLSKIDVVEELVAAH- 300
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
+ ++++V + L E ++ P+I G TS ER ++ AF+ +++T+ +SKV
Sbjct: 301 --KNEQLLVIGQYIDQLDEIGERINAPVIKGETSVKERQRLFDAFRAG-EVHTLVVSKVA 357
Query: 325 DNSIDIPEANVIIQISS 341
+ SID+PEA+V IQ+S
Sbjct: 358 NFSIDLPEASVAIQVSG 374
>gi|452207732|ref|YP_007487854.1| DNA repair helicase Rad25 [Natronomonas moolapensis 8.8.11]
gi|452083832|emb|CCQ37159.1| DNA repair helicase Rad25 [Natronomonas moolapensis 8.8.11]
Length = 632
Score = 170 bits (431), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 118/385 (30%), Positives = 185/385 (48%), Gaps = 42/385 (10%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ +++ +G SG++V P G+GK++ + ++ L L + QW
Sbjct: 258 RPYQADWIARFADSG---SGVLVGPPGSGKTVAALGVMADVEGETLVLVPSRELAGQWHE 314
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ +T+ +Q+ + +KE R V + TY + RS +R+W
Sbjct: 315 EILERTTLSPEQVGEYHGGAKE-IRP---VTIATYRIAGMDRHRSL--------FDSRKW 362
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH +P+ + R+ SL H +LGLTAT VRE E ++ L+GP + +W
Sbjct: 363 GLIVFDEVHHIPSPVHRRSASLQTKH-RLGLTATPVRETEDQEEIYTLVGPPIG-TDWEA 420
Query: 207 LVKGGFIAN----VQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
L + G++A ++C P +E EY + ++QA NP K R ++
Sbjct: 421 LFEAGYVAEPEVEIRCLPWASPAHRE---EYAASDGHGRRQAA-ATNPAKIREISAIL-- 474
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
HE RG K IVF + + A L P I G T H R+++ F+ ++TI +S+
Sbjct: 475 HEN-RGSKAIVFVEYIDQGDAIAEALSVPFISGETPHARRSRLFDRFRRGA-VDTIVVSR 532
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
VGD ID+P+A V I S GSRRQ AQR GR +R GK A Y L
Sbjct: 533 VGDEGIDLPDAEVAIAASGLGGSRRQGAQRAGRTMRPVGK-------------ARMYVLA 579
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFK 407
+ T+E ++ R + L +G +
Sbjct: 580 TRGTEEEDFARNRTKHLAARGVRVR 604
>gi|313126222|ref|YP_004036492.1| DNA/RNA helicase, superfamily ii [Halogeometricum borinquense DSM
11551]
gi|448286064|ref|ZP_21477299.1| DNA/RNA helicase, superfamily ii [Halogeometricum borinquense DSM
11551]
gi|312292587|gb|ADQ67047.1| DNA/RNA helicase, superfamily II [Halogeometricum borinquense DSM
11551]
gi|445575115|gb|ELY29594.1| DNA/RNA helicase, superfamily ii [Halogeometricum borinquense DSM
11551]
Length = 643
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 114/398 (28%), Positives = 186/398 (46%), Gaps = 36/398 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ L++EL+ A+ R YQ+ + +SG++V P GAGK++ G+
Sbjct: 272 DDRDLETGAALDVELR--AELREYQQDWTDRFT---EQKSGVLVGPPGAGKTVTGIGILA 326
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QW + +++ +DQI + K+ V + TY
Sbjct: 327 AVGGETLVLVPSRELAAQWREEILRHTSLSEDQIGEYHGGQKQ----VRPVTIATYQTAG 382
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DEVH VP+ ++R+ L H +LGL+AT +RED
Sbjct: 383 MDRHRSL--------FDDREWGLIVYDEVHHVPSRIYRRSADLQAKH-RLGLSATPIRED 433
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
++ ++ LIGP + +W L + G++ + + P + + ++++ L
Sbjct: 434 DKEKEIFTLIGPPIG-TDWSKLFEAGYVQEPEVEIRYVPWADDTARNEWSSADGRERRQL 492
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKI 305
MNP K L+R H + K +VF D L E A L P I G H R ++
Sbjct: 493 ASMNPQKIAETRRLLRQHPKS---KALVFVDYLDQGEELAEALDVPFISGEMRHHHRERL 549
Query: 306 LQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLED 365
+ F+ +L T+ +S+VGD ID+P A + I S GSRRQ AQR GR +R G
Sbjct: 550 FRQFREG-ELRTLVISRVGDEGIDLPNAELAIVASGLGGSRRQGAQRAGRTMRPAG---- 604
Query: 366 RMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
A Y L + T E ++ ++ + L ++G
Sbjct: 605 ---------GALVYVLATRGTSEEDFAQRQMRHLAEKG 633
>gi|76802734|ref|YP_330829.1| DNA repair helicase [Natronomonas pharaonis DSM 2160]
gi|76558599|emb|CAI50191.2| DNA repair helicase Rad25 [Natronomonas pharaonis DSM 2160]
Length = 624
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 125/402 (31%), Positives = 186/402 (46%), Gaps = 44/402 (10%)
Query: 6 DFRN-DNVNP---DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV 61
D RN D +P DL +EL RPYQ +++ G SG++V P G+GK++ +
Sbjct: 243 DHRNLDTGDPLPMDLTLEL------RPYQSDWIARFADAG---SGVLVGPPGSGKTVAAL 293
Query: 62 SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121
I+ L L + QW +T+ +Q+ + SKE R V + TY
Sbjct: 294 GIMADIEGETLILVPSRELAAQWRENLLNETTLSPEQVGEYHGGSKE-IRP---VTIATY 349
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
RS +R+WGL++ DEVH +P+ + R+ L H +LGLTAT
Sbjct: 350 QTAGMDRHRSL--------FDSRKWGLIVYDEVHHIPSPVHRRSAQLQTKH-RLGLTATP 400
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241
VRE + + L+G + NW L + G++A + + P E +
Sbjct: 401 VRETDDQQQIYTLVGQPIG-TNWEALFEAGYVAEPEVEIRFLPWASETHRNEYGSATGHE 459
Query: 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVE 301
K+ L NP K R ++ HE RG K IVF + + + A L P I G T H
Sbjct: 460 KRQLAATNPAKIREISAIL--HEN-RGSKAIVFVEYIEQGDQIAEALGVPFISGETPHAR 516
Query: 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
R+K+ F+ + L+TI +S+VGD ID+P+ V I S GSRRQ AQR GR +R G
Sbjct: 517 RSKLFGRFRGGQ-LDTIVVSRVGDEGIDLPDTEVAIAASGLGGSRRQGAQRAGRTMRPVG 575
Query: 362 KLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
K A Y L + ++E ++ KR + L +G
Sbjct: 576 K-------------ARMYVLATRGSREEDFARKRTKHLAARG 604
>gi|449683205|ref|XP_004210294.1| PREDICTED: TFIIH basal transcription factor complex helicase XPB
subunit-like, partial [Hydra magnipapillata]
Length = 170
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 96/162 (59%), Positives = 113/162 (69%), Gaps = 10/162 (6%)
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
VGD S D+PEANV+IQISSH GSRRQEAQRLGRILRAK + EEYNAFFYSLV
Sbjct: 1 VGDTSFDMPEANVLIQISSHGGSRRQEAQRLGRILRAKKDM------AAEEYNAFFYSLV 54
Query: 383 STDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDD 442
STDT+EMF+S KRQ+FLI+QGYS+KVIT L D + LSY E LL KVL+A D
Sbjct: 55 STDTEEMFFSNKRQRFLINQGYSYKVITKLAGMDEES-LSYSNKKEHHELLQKVLAATDT 113
Query: 443 AVGLEQLDEDADDIA--LHKARRIAGSMSAMSGAQGMVYMEY 482
E++ D+ + + L RR GSM++MSGA MVY EY
Sbjct: 114 DAEEEKIPGDSANKSGNLSVVRR-QGSMASMSGADDMVYSEY 154
>gi|448410539|ref|ZP_21575244.1| DNA/RNA helicase, superfamily ii [Halosimplex carlsbadense 2-9-1]
gi|445671575|gb|ELZ24162.1| DNA/RNA helicase, superfamily ii [Halosimplex carlsbadense 2-9-1]
Length = 646
Score = 167 bits (423), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 113/394 (28%), Positives = 188/394 (47%), Gaps = 42/394 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
D+N+EL R YQ + + +SG++V P G+GK++ + R+ L L
Sbjct: 244 DMNLEL------RQYQHDWVERFM---ETKSGVLVGPPGSGKTVAAMGIVERVGGETLIL 294
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
+ V QW + +T+ + Q+ + +K+ V + TY R
Sbjct: 295 VPSRELVRQWRDELLAHTTLDESQVGEYHGGTKD----VRPVTIATYQTAGMDRHR---- 346
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+REWGL++ DEV VP+ ++R+ +L H +LGL+A+ VRED+ ++ L
Sbjct: 347 ----HLFDSREWGLIVYDEVQHVPSDVYRRSANLQTRH-RLGLSASPVREDDLQEEIFTL 401
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKKKQALYVMNPNKF 253
IGP + +W L GF+A + P T + +EY+ E +++Q + NP K
Sbjct: 402 IGPPIG-TDWDALFDEGFVAEPTVEIRYVPWTDDDHRNEYVGSEGHERRQ-IAASNPAKV 459
Query: 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
++R H +Q K ++F D L E A L P I G T H ER + + F+
Sbjct: 460 EETRRILREHPEQ---KALIFVDYLDQGRELAAALDAPFISGDTPHHERARKFEQFRDG- 515
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
L+T+ +S+VGD ID+P+A++ I S GSRRQ QR GR +R G+
Sbjct: 516 SLDTLVVSRVGDEGIDLPDASLAIVASGLGGSRRQGTQRAGRTMRPAGR----------- 564
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + +E ++ ++ ++L +G +
Sbjct: 565 --ALMYVLATQGAREEEFARRQMRYLAGKGVQVR 596
>gi|448738744|ref|ZP_21720765.1| DNA/RNA helicase, superfamily ii [Halococcus thailandensis JCM
13552]
gi|445801130|gb|EMA51474.1| DNA/RNA helicase, superfamily ii [Halococcus thailandensis JCM
13552]
Length = 608
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 118/390 (30%), Positives = 186/390 (47%), Gaps = 42/390 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
DL ++L R YQE L + G +G++V P G+GK++ + A I L L
Sbjct: 251 DLGVDL------REYQEDWLDRFLDTG---AGVLVGPPGSGKTIAAIGAMAEIGGETLIL 301
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
A QW Q +++ +QI + KE V + TY R
Sbjct: 302 APGRELAGQWHEQLLTHTSLDPEQIGEYHGGEKE----IRPVTIATYRTAGMDRHR---- 353
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
K+ +E R WGL++ DEVH VPA ++R+ L H +LGL+AT +RED++ ++ L
Sbjct: 354 -KLFDE---RRWGLIVYDEVHHVPAAIYRRSADLQAKH-RLGLSATPIREDDKEGEIFTL 408
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TKEFFSEYLKKENSKKKQALYVMNPNKF 253
IGP + +W L + GF+A + + P ++E +EY E +++Q + NP K
Sbjct: 409 IGPPIG-TDWAKLFEAGFVAEPEVELRYVPWRSEEDRTEYASVEGYERRQ-VAGTNPAKL 466
Query: 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
A L+ H K ++F + L EY+ L P I G T + ER ++ F+
Sbjct: 467 DAIRSLLADHADA---KTLIFVEWLDQGREYSDALDIPFISGETRYAERERLFDEFRRG- 522
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
+ + + +S+VGD ID+P A V I S GSRRQ +QR GR +R G
Sbjct: 523 ERSRLLVSRVGDEGIDLPNAEVAIVASGLGGSRRQGSQRAGRTMRPSG------------ 570
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
N+ Y L + T+E ++ + + L +G
Sbjct: 571 -NSQMYVLATRGTREEEFARNQLRHLAGKG 599
>gi|448733231|ref|ZP_21715476.1| DNA/RNA helicase, superfamily ii [Halococcus salifodinae DSM 8989]
gi|445802965|gb|EMA53265.1| DNA/RNA helicase, superfamily ii [Halococcus salifodinae DSM 8989]
Length = 645
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 185/390 (47%), Gaps = 42/390 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
DL +EL R YQ + + + +G +G++V P G+GK++ ++A + L L
Sbjct: 283 DLELEL------REYQREWVEQFLESG---AGVLVGPPGSGKTIAAIAALADVGGETLVL 333
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
A + QW Q + + DQ+ + K V + TY R
Sbjct: 334 APSRELAGQWRDQLLTHTDLDPDQVGEYHGGEK----SIRPVTIATYQTAGMDRHR---- 385
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
K+ +E R WGL++ DEVH +P+ +FR+ L H +LGL+AT VRED++ +++ L
Sbjct: 386 -KLFDE---RRWGLIVYDEVHHIPSKVFRRSADLQAKH-RLGLSATPVREDDKESEIFTL 440
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF-FSEYLKKENSKKKQALYVMNPNKF 253
IGP + +W L + GF+A + + P E EY E +++Q + N K
Sbjct: 441 IGPPIG-TDWAKLFEAGFVAEPEVELRYVPWGSEIDREEYASAEGHERRQ-VAGTNTAKL 498
Query: 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
A L+ H K +VF + L EYA L P I G T H ER ++ F+
Sbjct: 499 DAVRSLLDDHPDA---KALVFVEWLDQGREYADALDVPFISGETRHAERERLFDEFRRG- 554
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
+ + + +S+VGD ID+P A V I S GSRRQ +QR GR +R G
Sbjct: 555 ERSRLLVSRVGDEGIDLPNAEVAIMASGLGGSRRQASQRAGRTMRPAG------------ 602
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
N+ Y L + T+E + ++ + L+ +G
Sbjct: 603 -NSRVYVLATRGTREEDFVRQQLRHLVGKG 631
>gi|448726395|ref|ZP_21708800.1| DNA/RNA helicase, superfamily ii [Halococcus morrhuae DSM 1307]
gi|445795049|gb|EMA45585.1| DNA/RNA helicase, superfamily ii [Halococcus morrhuae DSM 1307]
Length = 608
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 117/390 (30%), Positives = 186/390 (47%), Gaps = 42/390 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
DL ++L R YQE L + G +G++V P G+GK++ + A I L L
Sbjct: 251 DLGVDL------REYQEDWLDRFLDTG---AGVLVGPPGSGKTIAAIGAMADIGGETLIL 301
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
A QW Q +++ +QI + KE V + TY R
Sbjct: 302 APGRELAGQWHEQLLTHTSLDPEQIGEYHGGEKE----IRPVTIATYRTAGMDRHR---- 353
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
K+ +E R WGL++ DEVH VPA ++R+ L H +LGL+AT +RED++ ++ L
Sbjct: 354 -KLFDE---RRWGLIVYDEVHHVPAAIYRRSADLQAKH-RLGLSATPIREDDKEGEIFTL 408
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TKEFFSEYLKKENSKKKQALYVMNPNKF 253
IGP + +W L + GF+A + + P ++E +EY E +++Q + NP K
Sbjct: 409 IGPPIG-TDWAKLFEAGFVAEPEVELRYVPWRSEEDRTEYASVEGYERRQ-VAGTNPAKL 466
Query: 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
A L+ H K ++F + L EY+ L P I G T + ER ++ F+
Sbjct: 467 DAIRSLLADHADA---KTLIFVEWLDQGQEYSDALDIPFISGETRYPERERLFDEFRRG- 522
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
+ + + +S+VGD ID+P A + I S GSRRQ +QR GR +R G
Sbjct: 523 ERSRLLVSRVGDEGIDLPNAEIAIVASGLGGSRRQGSQRAGRTMRPSG------------ 570
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
N+ Y L + T+E ++ + + L +G
Sbjct: 571 -NSQMYVLATRGTREEEFARNQLRHLAGKG 599
>gi|448414419|ref|ZP_21577488.1| DNA/RNA helicase, superfamily ii [Halosarcina pallida JCM 14848]
gi|445681985|gb|ELZ34409.1| DNA/RNA helicase, superfamily ii [Halosarcina pallida JCM 14848]
Length = 707
Score = 164 bits (416), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 108/395 (27%), Positives = 182/395 (46%), Gaps = 40/395 (10%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D ++ DL +EL R YQ + + ++G++V P GAGK++ G+ +
Sbjct: 343 GDPLDVDLRVEL------RDYQRDWVDRFTTQ---KAGVLVGPPGAGKTVTGIGVLAAVG 393
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ ++QI + K+ V + TY
Sbjct: 394 GETLILVPSRELAAQWRSELLRHTSLDEEQIGEYHGGEKQ----VRPVTIATYQTAGMDR 449
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
RS +REWGL++ DEVH VP+ ++R+ L H +LGL+AT +RED++
Sbjct: 450 HRSL--------FDDREWGLIVYDEVHHVPSRIYRRSADLQAKH-RLGLSATPIREDDKE 500
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIGP + +W L + G++ + + P + + +++ L M
Sbjct: 501 KEIFTLIGPPIG-TDWSKLFEAGYVQEPEVEIRYVPWADDTARNEWSSADGRERHQLAAM 559
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
N K L+R H + K +VF D L + A L P + G H R ++ +
Sbjct: 560 NSQKIAETRRLLRQHPES---KALVFVDYLDQGEDIAEALDVPFVSGEMRHHHRERLFRQ 616
Query: 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368
F+ + L T+ +S+VGD ID+P A + + S GSRRQ AQR GR +R G
Sbjct: 617 FREGK-LRTLVISRVGDEGIDLPNAELAVVASGLGGSRRQGAQRAGRTMRPAG------- 668
Query: 369 GGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
NA Y L + T E ++ ++ + L ++G
Sbjct: 669 ------NALVYVLATRGTSEEDFAQRQMRHLAEKG 697
>gi|195129211|ref|XP_002009052.1| GI11476 [Drosophila mojavensis]
gi|193920661|gb|EDW19528.1| GI11476 [Drosophila mojavensis]
Length = 430
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 113/181 (62%), Gaps = 21/181 (11%)
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370
S +NTIF+SKV D S D+PEANV+IQISSH GSRRQEAQRLGRILRAK
Sbjct: 247 ASTSVNTIFVSKVADTSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAK------KGAI 300
Query: 371 KEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQL 430
EEYNAFFY+LVS DT EM YS KRQ+FL++QGYS+KVIT L D+ DL Y +EQ
Sbjct: 301 AEEYNAFFYTLVSQDTMEMSYSRKRQRFLVNQGYSYKVITHLKGMDTETDLMYGTQEEQG 360
Query: 431 ALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGS--------MSAMSGAQGMVYMEY 482
LL VLSA D LD + + + R GS +S+MSG VY E+
Sbjct: 361 QLLQLVLSASD-------LDCEDEKVPGEPGYRPGGSGTAKRMGGLSSMSGGDDAVYYEH 413
Query: 483 R 483
R
Sbjct: 414 R 414
>gi|321466391|gb|EFX77387.1| hypothetical protein DAPPUDRAFT_247765 [Daphnia pulex]
Length = 206
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 81/204 (39%), Positives = 123/204 (60%), Gaps = 5/204 (2%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQP--RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL 58
++ +YDFRND+ +N+ELKP A RPYQ+ L K F + RA SG+I PC AG+SL
Sbjct: 5 LIVKYDFRNDSQKQHINIELKPAALDLIRPYQKDCLLKTFAHDRAHSGLICFPCVAGRSL 64
Query: 59 VGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118
V V+A C++ K L L ++ + V+ W QFK+WS + ICRFT ++ + + +++
Sbjct: 65 VVVAACCKVHKMALILCSSELVVEYWKAQFKMWSIADNGMICRFTLNANDNPLA-SKILI 123
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
TTY M+ S + I ++ +EWG+++ DEVH + M V+++ ++ C LGL
Sbjct: 124 TTYKMITHQNSCSSMEFRRIMWLQQQEWGIMVFDEVHAISTDMLDSVLTIVQAPCNLGLI 183
Query: 179 ATLVREDERITDLNFLIGPKLYEA 202
+ + I DLN LIGPKLYEA
Sbjct: 184 P--LSSENLIKDLNILIGPKLYEA 205
>gi|354610899|ref|ZP_09028855.1| type III restriction protein res subunit [Halobacterium sp. DL1]
gi|353195719|gb|EHB61221.1| type III restriction protein res subunit [Halobacterium sp. DL1]
Length = 599
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 107/354 (30%), Positives = 165/354 (46%), Gaps = 27/354 (7%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D ++ LN+EL R YQ + + A SG++V P GAGK++ + A +
Sbjct: 234 GDPLDVTLNLEL------RDYQADWVERFVD---ANSGVLVGPPGAGKTVAAMGALEAVG 284
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ DQ+ + SKE V + TY
Sbjct: 285 GETLVLVPSRELAAQWRDELLAHTSLTPDQVGEYHGGSKE----VRPVTIATYQTAGMDR 340
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R +REWGL++ DE H +P+ +FR+ L H +LGL+AT VRED++
Sbjct: 341 HR--------HVFDDREWGLIVYDEAHHIPSEVFRRSADLQSKH-RLGLSATPVREDDKE 391
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
D+ LIGP + +W L G++A + + P + E+ ++ L
Sbjct: 392 MDIYTLIGPPIG-TDWDALFDAGYVAEPEVEIRYVPWLDDDARYEYASESGHTRRRLAAE 450
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K L+ H + + +VF D L A L P + G T HVER +
Sbjct: 451 NPAKDEEARHLLGQHPDK---QALVFVDYLEQGRRLAEALDAPFVSGETRHVERQSLFDQ 507
Query: 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362
F+ L+T+ +S++GD ID+P+A + I S GSRRQ AQR GR +R G+
Sbjct: 508 FRTGA-LDTLVVSRIGDEGIDLPDAELAIVASGLGGSRRQGAQRAGRTMRPGGQ 560
>gi|448729965|ref|ZP_21712277.1| DNA/RNA helicase, superfamily ii [Halococcus saccharolyticus DSM
5350]
gi|445794286|gb|EMA44839.1| DNA/RNA helicase, superfamily ii [Halococcus saccharolyticus DSM
5350]
Length = 634
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 117/397 (29%), Positives = 184/397 (46%), Gaps = 42/397 (10%)
Query: 8 RNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67
R ++ +L +EL R YQ + + + +G +G++V P G+GK++ ++ +
Sbjct: 265 RGAELDVELGLEL------REYQREWVEQFLDSG---AGVLVGPPGSGKTIAALATLAEV 315
Query: 68 KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFG 127
L LA + QW Q + + DQI + K V + TY
Sbjct: 316 GGETLVLAPSRELAGQWRDQLLAHTDLDPDQIGEYHGGEK----SIRPVTIATYRTAGMD 371
Query: 128 GKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187
R K+ +E R WGL++ DEVH +P+ +FR+ L H +LGL+AT VRED +
Sbjct: 372 RHR-----KLFDE---RRWGLIVYDEVHHIPSKVFRRSADLQAKH-RLGLSATPVREDNK 422
Query: 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF-FSEYLKKENSKKKQALY 246
+++ LIGP + +W L + GF+A + + P E EY E +++Q +
Sbjct: 423 ESEIFTLIGPPIG-TDWAKLFEAGFVAEPEVELRYVPWGSEIDREEYASAEGHERRQ-VA 480
Query: 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKIL 306
N K A L+ H K +VF + L EYA L P I G T H ER ++
Sbjct: 481 GTNSAKLDAIRSLLDDHADA---KALVFVEWLDQGREYAEALGIPFISGETRHAERERLF 537
Query: 307 QAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366
F+ + + +S+VGD ID+P A V I S GSRRQ +QR GR +R G
Sbjct: 538 DEFRRG-ERTRLIVSRVGDEGIDLPNAEVAIMASGLGGSRRQASQRAGRTMRPAG----- 591
Query: 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
N+ Y L + T+E + ++ + L +G
Sbjct: 592 --------NSRVYVLATRGTREEDFVRQQLRHLAGKG 620
>gi|389847266|ref|YP_006349505.1| DNA repair helicase [Haloferax mediterranei ATCC 33500]
gi|448614789|ref|ZP_21663817.1| putative DNA repair helicase [Haloferax mediterranei ATCC 33500]
gi|388244572|gb|AFK19518.1| putative DNA repair helicase [Haloferax mediterranei ATCC 33500]
gi|445752876|gb|EMA04295.1| putative DNA repair helicase [Haloferax mediterranei ATCC 33500]
Length = 718
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 110/386 (28%), Positives = 178/386 (46%), Gaps = 36/386 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + R+G++V P GAGK++ G+ A + L L + QW
Sbjct: 336 RDYQQDWVDRFLDQ---RAGVLVGPPGAGKTIAGIGALGAVGGETLILVPSRELARQWRE 392
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + + + DQI + SKE R V + TY RS +R W
Sbjct: 393 ELRSTTDLSADQIGEYHGGSKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRW 440
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE H +P+ +F++ +L H +LGL+AT +RED++ ++ LIGP + +W
Sbjct: 441 GLIIYDEAHHIPSRVFQRSANLQSKH-RLGLSATPIREDDKEAEIFTLIGPPIG-TDWGK 498
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G++ + + + + +++ L MNP K F IR +
Sbjct: 499 LFDAGYVQEPEVEIRYVGWGDDMARNEWAASDGRERYMLAAMNPGKI----FEIRRLRAR 554
Query: 267 RGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
D K +VF D L E + L P + G T H R +AF+ DL+T+ +S++GD
Sbjct: 555 HADSKTLVFVDYLDQGKEISEALDVPFVSGETRHHRREAYFEAFRDG-DLDTLVISRIGD 613
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A + I S GSRRQ +QR GR +R G +A Y L +
Sbjct: 614 EGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAG-------------SALMYVLATRG 660
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVITS 411
T E ++ ++ Q L +G + +S
Sbjct: 661 TSEEDFAQRQMQHLAGKGIRVRETSS 686
>gi|409728397|ref|ZP_11271263.1| DNA repair helicase [Halococcus hamelinensis 100A6]
gi|448722840|ref|ZP_21705368.1| DNA repair helicase [Halococcus hamelinensis 100A6]
gi|445788507|gb|EMA39216.1| DNA repair helicase [Halococcus hamelinensis 100A6]
Length = 615
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 111/382 (29%), Positives = 176/382 (46%), Gaps = 34/382 (8%)
Query: 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQF 88
YQ + + G+G +G++V P G+GK++ + A + L LA + QW
Sbjct: 264 YQRDWVERFLGSG---AGVLVGPPGSGKTVAAMGAMSEVGGETLVLAPSRELAGQWREAL 320
Query: 89 KLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGL 148
+ + DQI + K R R V + TY E K+ +E R WGL
Sbjct: 321 LTHTDLDPDQIGEYHGGEK-RIRP---VTIATYRTAGM-----ERHRKLFDE---RRWGL 368
Query: 149 LLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLV 208
++ DEVH +PA ++RK + L H +LGL+AT VRED++ ++ LIGP + +W L
Sbjct: 369 IVYDEVHHIPAAVYRKSVDLQAKH-RLGLSATPVREDDKGAEIFTLIGPPIG-TDWAKLF 426
Query: 209 KGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRG 268
+ GF+A + + P E + +++ + NP K A L+ H
Sbjct: 427 EAGFVAEPEVELRFVPWGSEADRDEYASVTGHERRRVAGSNPAKLDAIRSLLDEHADA-- 484
Query: 269 DKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328
K +VF + L YA L P I G T H ER ++ F+ + + +S+VGD I
Sbjct: 485 -KALVFVEWLDQGESYAEALGIPFISGDTPHPERERLFDEFRRG-ERARLVVSRVGDEGI 542
Query: 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388
D+P A V + S GSRRQ +QR GR +R G ++ Y L + T+E
Sbjct: 543 DLPNAEVAVVASGLGGSRRQASQRAGRTMRPAG-------------SSRLYVLATRGTRE 589
Query: 389 MFYSTKRQQFLIDQGYSFKVIT 410
++ ++ + L +G T
Sbjct: 590 EEFARQQLRHLAGKGIRLTETT 611
>gi|448608861|ref|ZP_21660140.1| putative DNA repair helicase [Haloferax mucosum ATCC BAA-1512]
gi|445747238|gb|ELZ98694.1| putative DNA repair helicase [Haloferax mucosum ATCC BAA-1512]
Length = 708
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/387 (28%), Positives = 179/387 (46%), Gaps = 36/387 (9%)
Query: 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77
+++ H R YQ+ +++ R+G++V P GAGK++ G+ A + L L +
Sbjct: 312 LDISLHIDLRDYQQDWVNRFIDQ---RAGVLVGPPGAGKTIAGIGALGAVGGETLILVPS 368
Query: 78 AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI 137
QW + + + DQI + SKE R V + TY RS
Sbjct: 369 RELARQWREELLSTTDLTRDQIGEYHGGSKE-IRP---VTIATYQTAGMDRHRSL----- 419
Query: 138 IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGP 197
+R WGL++ DE H +P+ +F++ +L H +LGL+AT +RED++ ++ LIGP
Sbjct: 420 ---FDSRRWGLIIYDEAHHIPSRVFQRSANLQSKH-RLGLSATPIREDDKEAEIFTLIGP 475
Query: 198 KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257
+ +W L G++ + + + + + +++ L MNP K
Sbjct: 476 PIG-TDWSKLFDAGYVQEPEIEIRYVGWSDDMARNEWAASDGRERHMLAAMNPGKI---- 530
Query: 258 FLIRFHEQQRGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLN 316
F IR + D K +VF D L + L P + G T H R +AF+ DL+
Sbjct: 531 FEIRRLRARHADSKTLVFVDYLDQGETISEALDVPFVSGETRHHRREAYFEAFRDD-DLD 589
Query: 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNA 376
T+ +S++GD ID+P A + I S GSRRQ +QR GR +R G +A
Sbjct: 590 TLVISRIGDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAG-------------SA 636
Query: 377 FFYSLVSTDTQEMFYSTKRQQFLIDQG 403
Y L + T E ++ ++ Q L +G
Sbjct: 637 LMYVLATRGTSEEDFAQRQMQHLAGKG 663
>gi|448624489|ref|ZP_21670437.1| DNA repair helicase Rad25 [Haloferax denitrificans ATCC 35960]
gi|445749694|gb|EMA01136.1| DNA repair helicase Rad25 [Haloferax denitrificans ATCC 35960]
Length = 706
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 33/369 (8%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
R+G++V P GAGK++ G+ A + L L + QW + + + +DQI +
Sbjct: 333 RAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWREELLSTTDLDEDQIGEYH 392
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+KE R V + TY RS +R WGL++ DE H +P+ +F+
Sbjct: 393 GGAKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRWGLIIYDEAHHIPSRVFQ 440
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT +RED++ ++ LIGP + +W L G++ + +
Sbjct: 441 RSADLQSKH-RLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGYVQEPEVEIRYV 498
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD-KIIVFADNLFALT 282
+ + +++ L MNP K F IR + D K +VF D L
Sbjct: 499 EWGSDMARNEWASSDGRERHMLAAMNPGKI----FEIRRLRARHADSKTLVFVDYLDQGE 554
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
+ L P + G T H R +AF+ DL+T+ +S++GD ID+P A + I S
Sbjct: 555 AISEALDVPFVSGETRHHRREAYFEAFRTG-DLDTLVISRIGDEGIDLPNAGLAIVASGL 613
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ +QR GR +R G +A Y L + T E ++ ++ Q L +
Sbjct: 614 GGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGTSEEDFAQRQMQHLAGK 660
Query: 403 GYSFKVITS 411
G + +S
Sbjct: 661 GIRVRETSS 669
>gi|448585090|ref|ZP_21647699.1| DNA repair helicase Rad25 [Haloferax gibbonsii ATCC 33959]
gi|445727429|gb|ELZ79042.1| DNA repair helicase Rad25 [Haloferax gibbonsii ATCC 33959]
Length = 680
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 178/396 (44%), Gaps = 36/396 (9%)
Query: 17 NMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76
+++ H R YQ + + R+G++V P GAGK++ G+ A + L L
Sbjct: 288 ELDVSLHVDLRDYQRDWVDRFVDQ---RAGVLVGPPGAGKTIAGIGALAAVGGETLVLVP 344
Query: 77 NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEK 136
+ QW + + + DQI + +KE R V + TY RS
Sbjct: 345 SRELARQWREELLSTTDLDADQIGEYHGGAKE-IRP---VTIATYQTAGMDRHRSL---- 396
Query: 137 IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
+R WGL++ DE H +P+ +F++ L H +LGL+AT +RED++ ++ LIG
Sbjct: 397 ----FDSRRWGLIIYDEAHHIPSRVFQRSADLQSKH-RLGLSATPIREDDKEAEIFTLIG 451
Query: 197 PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC 256
P + +W L G++ + + + + +++ L MNP K
Sbjct: 452 PPIG-TDWGKLFDAGYVQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKI--- 507
Query: 257 EFLIRFHEQQRGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDL 315
F IR + D K +VF D L + L P + G T H R +AF+ DL
Sbjct: 508 -FEIRRLRARHADSKTLVFVDYLDQGEAISEALDVPFVSGETRHHRREAYFEAFRDG-DL 565
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375
+T+ +S++GD ID+P A + I S GSRRQ +QR GR +R G +
Sbjct: 566 DTLVISRIGDEGIDLPNAGLAIVASGLGGSRRQGSQRAGRTMRPTG-------------S 612
Query: 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS 411
A Y L + T E ++ ++ Q L +G + +S
Sbjct: 613 ALVYVLATRGTSEEDFAQRQMQHLAGKGIRVRETSS 648
>gi|433427155|ref|ZP_20407000.1| DNA repair helicase Rad25 [Haloferax sp. BAB2207]
gi|448570486|ref|ZP_21639316.1| DNA repair helicase Rad25 [Haloferax lucentense DSM 14919]
gi|448595446|ref|ZP_21653149.1| DNA repair helicase Rad25 [Haloferax alexandrinus JCM 10717]
gi|432196513|gb|ELK52962.1| DNA repair helicase Rad25 [Haloferax sp. BAB2207]
gi|445723133|gb|ELZ74780.1| DNA repair helicase Rad25 [Haloferax lucentense DSM 14919]
gi|445742900|gb|ELZ94390.1| DNA repair helicase Rad25 [Haloferax alexandrinus JCM 10717]
Length = 695
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 33/365 (9%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
R+G++V P GAGK++ G+ A + L L + QW + + + + DQI +
Sbjct: 318 RAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWREELRSTTDLDADQIGEYH 377
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+KE R V + TY RS +R WGL++ DE H +P+ +F+
Sbjct: 378 GGAKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRWGLIIYDEAHHIPSRVFQ 425
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT +RED++ ++ LIGP + +W L G++ + +
Sbjct: 426 RSADLQSKH-RLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGYVQEPEVEIRYV 483
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD-KIIVFADNLFALT 282
+ + +++ L MNP K F IR + D K +VF D L
Sbjct: 484 GWGDDMARNEWASSDGRERHMLAAMNPGKI----FEIRRLRARHADSKTLVFVDYLDQGE 539
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
A L P + G T H R +AF+ DL+T+ +S++GD ID+P A + I S
Sbjct: 540 AIAEALDVPFVSGETRHHRREAYFEAFRDG-DLDTLVISRIGDEGIDLPNAGLAIVASGL 598
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ +QR GR +R G +A Y L + T E ++ ++ Q L +
Sbjct: 599 GGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGTSEEDFAQRQMQHLAGK 645
Query: 403 GYSFK 407
G +
Sbjct: 646 GIRVR 650
>gi|292655869|ref|YP_003535766.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
gi|448289858|ref|ZP_21481020.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
gi|291370479|gb|ADE02706.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
gi|445581040|gb|ELY35404.1| DNA repair helicase Rad25 [Haloferax volcanii DS2]
Length = 695
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 33/365 (9%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
R+G++V P GAGK++ G+ A + L L + QW + + + + DQI +
Sbjct: 318 RAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWREELRSTTDLDADQIGEYH 377
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+KE R V + TY RS +R WGL++ DE H +P+ +F+
Sbjct: 378 GGAKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRWGLIIYDEAHHIPSRVFQ 425
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT +RED++ ++ LIGP + +W L G++ + +
Sbjct: 426 RSADLQSKH-RLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGYVQEPEVEIRYV 483
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD-KIIVFADNLFALT 282
+ + +++ L MNP K F IR + D K +VF D L
Sbjct: 484 GWGDDMARNEWASSDGRERHMLAAMNPGKI----FEIRRLRARHADSKTLVFVDYLDQGE 539
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
A L P + G T H R +AF+ DL+T+ +S++GD ID+P A + I S
Sbjct: 540 AIAEALDVPFVSGETRHHRREAYFEAFRDG-DLDTLVISRIGDEGIDLPNAGLAIVASGL 598
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ +QR GR +R G +A Y L + T E ++ ++ Q L +
Sbjct: 599 GGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGTSEEDFAQRQMQHLAGK 645
Query: 403 GYSFK 407
G +
Sbjct: 646 GIRVR 650
>gi|448562552|ref|ZP_21635510.1| DNA repair helicase Rad25 [Haloferax prahovense DSM 18310]
gi|445718870|gb|ELZ70554.1| DNA repair helicase Rad25 [Haloferax prahovense DSM 18310]
Length = 680
Score = 160 bits (405), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 178/396 (44%), Gaps = 36/396 (9%)
Query: 17 NMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76
+++ H R YQ + + R+G++V P GAGK++ G+ A + L L
Sbjct: 288 ELDVSLHVDLRDYQRDWVDRFVDQ---RAGVLVGPPGAGKTIAGIGALAAVGGETLVLVP 344
Query: 77 NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEK 136
+ QW + + + DQI + +KE R V + TY RS
Sbjct: 345 SRELARQWREELLSTTDLDADQIGEYHGGAKE-IRP---VTIATYQTAGMDRHRSL---- 396
Query: 137 IIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIG 196
+R WGL++ DE H +P+ +F++ L H +LGL+AT +RED++ ++ LIG
Sbjct: 397 ----FDSRRWGLIIYDEAHHIPSRVFQRSADLQSKH-RLGLSATPIREDDKEAEIFTLIG 451
Query: 197 PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRAC 256
P + +W L G++ + + + + +++ L MNP K
Sbjct: 452 PPIG-TDWGKLFDAGYVQEPEVEIRYVGWGDDMARNEWASSDGRERHMLAAMNPGKI--- 507
Query: 257 EFLIRFHEQQRGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDL 315
F IR + D K +VF D L + L P + G T H R +AF+ DL
Sbjct: 508 -FEIRRLRARHADSKTLVFVDYLDQGEAISEALDVPFVSGETRHHRREAYFEAFRDG-DL 565
Query: 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375
+T+ +S++GD ID+P A + I S GSRRQ +QR GR +R G +
Sbjct: 566 DTLVISRIGDEGIDLPNAGLAIVASGLGGSRRQGSQRAGRTMRPTG-------------S 612
Query: 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS 411
A Y L + T E ++ ++ Q L +G + +S
Sbjct: 613 ALVYVLATRGTSEEDFAQRQMQHLAGKGIRVRETSS 648
>gi|448604599|ref|ZP_21657766.1| DNA repair helicase Rad25 [Haloferax sulfurifontis ATCC BAA-897]
gi|445744008|gb|ELZ95488.1| DNA repair helicase Rad25 [Haloferax sulfurifontis ATCC BAA-897]
Length = 709
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/369 (28%), Positives = 170/369 (46%), Gaps = 33/369 (8%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
R+G++V P GAGK++ G+ A + L L + QW + + + +DQI +
Sbjct: 336 RAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWREELLSATDLDEDQIGEYH 395
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+KE R V + TY RS +R WGL++ DE H +P+ +F+
Sbjct: 396 GGAKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRWGLIIYDEAHHIPSRVFQ 443
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT +RED++ ++ LIGP + +W L G++ + +
Sbjct: 444 RSADLQSKH-RLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGYVQEPEVEIRYV 501
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD-KIIVFADNLFALT 282
+ + +++ L MNP K F IR + D K +VF D L
Sbjct: 502 EWGDDMARNEWASSDGRERHMLAAMNPGKI----FEIRRLRARHADSKTLVFVDYLDQGE 557
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
+ L P + G T H R +AF+ DL+T+ +S++GD ID+P A + I S
Sbjct: 558 AISEALDVPFVSGETRHHRREAYFEAFRDG-DLDTLVISRIGDEGIDLPNAGLAIVASGL 616
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ +QR GR +R G +A Y L + T E ++ ++ Q L +
Sbjct: 617 GGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGTSEEDFAQRQMQHLAGK 663
Query: 403 GYSFKVITS 411
G + +S
Sbjct: 664 GIRVRETSS 672
>gi|448539634|ref|ZP_21623100.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-646]
gi|448548854|ref|ZP_21627747.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-645]
gi|448555925|ref|ZP_21631783.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-644]
gi|445710376|gb|ELZ62191.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-646]
gi|445713947|gb|ELZ65719.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-645]
gi|445717210|gb|ELZ68930.1| DNA repair helicase Rad25 [Haloferax sp. ATCC BAA-644]
Length = 699
Score = 159 bits (403), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/365 (28%), Positives = 168/365 (46%), Gaps = 33/365 (9%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
R+G++V P GAGK++ G+ A + L L + QW + + + + DQI +
Sbjct: 318 RAGVLVGPPGAGKTIAGIGALAAVGGETLILVPSRELARQWREELRSTTDLDADQIGEYH 377
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+KE R V + TY RS +R WGL++ DE H +P+ +F+
Sbjct: 378 GGAKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRWGLIIYDEAHHIPSRVFQ 425
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT +RED++ ++ LIGP + +W L G++ + +
Sbjct: 426 RSADLQSKH-RLGLSATPIREDDKEAEIFTLIGPPIG-TDWGKLFDAGYVQEPEVEIRYV 483
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD-KIIVFADNLFALT 282
+ + +++ L MNP K F IR + D K +VF D L
Sbjct: 484 GWGDDMARNEWASSDGRERHMLAAMNPGKI----FEIRRLRARHADSKALVFVDYLDQGE 539
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
A L P + G T H R +AF+ DL+T+ +S++GD ID+P A + I S
Sbjct: 540 AIAEALGVPFVSGETRHHRREAYFEAFRDG-DLDTLVISRIGDEGIDLPNAGLAIVASGL 598
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ +QR GR +R G +A Y L + T E ++ ++ Q L +
Sbjct: 599 GGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGTSEEDFAQRQMQHLAGK 645
Query: 403 GYSFK 407
G +
Sbjct: 646 GIRVR 650
>gi|345004916|ref|YP_004807769.1| type III restriction protein res subunit [halophilic archaeon DL31]
gi|344320542|gb|AEN05396.1| type III restriction protein res subunit [halophilic archaeon DL31]
Length = 630
Score = 158 bits (400), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 109/356 (30%), Positives = 169/356 (47%), Gaps = 28/356 (7%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V+ +L EL R YQ+ + ++G++V P G+GK++ + A +
Sbjct: 238 GDPVDVELTTEL------REYQQSWVDSFL---EKQAGVLVGPPGSGKTVAALGALAGVG 288
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + ++I + + + +K+ R V + TY +
Sbjct: 289 GETLILVPSRELAGQWRQELLRHTSIDEADVGEYHGGTKQ-LRP---VTIATYQIAGMDR 344
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R+ + +E REWGL++ DE H VPA +FR+ +L H +LGLTAT VRE +
Sbjct: 345 HRT-----LFDE---REWGLVVFDEAHHVPAPVFRRSAALQSRH-RLGLTATPVRESDDE 395
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIGP L +W L GF+A + + P EF + +++ L M
Sbjct: 396 KEIYTLIGPPLG-TDWSQLFDAGFVAEPEVELRYLPWDDEFAENEWASAHGRERHILAGM 454
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K + L+ +Q G K +VF D L A + P I G T H R + +A
Sbjct: 455 NPRKIEETQKLL---AEQDG-KALVFVDYLDQGDAIAEAIDAPFISGETPHHRREALFEA 510
Query: 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
F+ + + +S+VGD ID+P A + I S GSRRQ AQR GR +R G+ E
Sbjct: 511 FRTGEE-EALVVSRVGDEGIDLPNAELAIVASGLGGSRRQGAQRAGRTMRPVGRAE 565
>gi|424814642|ref|ZP_18239820.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalina sp.
J07AB43]
gi|339758258|gb|EGQ43515.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalina sp.
J07AB43]
Length = 549
Score = 157 bits (398), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 171/351 (48%), Gaps = 30/351 (8%)
Query: 11 NVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS 70
N+ DL ++L R YQ++ + + + R+ ++ P G+GK++ + +I
Sbjct: 192 NIGADLTIDL------REYQQEYVERAYDE---RAAVLANPAGSGKTVTSIGLMAKIDGP 242
Query: 71 CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKR 130
L L V+QW + +T+ +DQI + D K+ V + TY+M A K
Sbjct: 243 TLVLVPQRSLVNQWKRELLDKTTLTEDQIGEYHGDKKKM----KDVTIATYHMAANKTKL 298
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITD 190
RN EWGL++ DEVH +P+ +FRK SL +S ++GL+A+ VRED + D
Sbjct: 299 ----------FRN-EWGLIIFDEVHHIPSKLFRKTASL-QSTRRIGLSASPVREDSKEKD 346
Query: 191 LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250
+ LIG ++ +W K G + ++ ++ + KK + NP
Sbjct: 347 IFALIGQEIG-GDWARFFKEGHVVKPDVEIQLVEWASDYHRHEYEQASGIKKAIIASKNP 405
Query: 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK 310
K E L+ H+++ K I+F D + E + P I G T ER + + F+
Sbjct: 406 AKKENLEELLDHHDEE---KTIIFCDWIDQGEEIEKEYNVPFISGETDFEEREEYFEDFR 462
Query: 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
++NTI +S++GD +D+P+ V I +S GSRRQ QR GR++R G
Sbjct: 463 ND-EMNTIMVSRIGDEGLDLPDTEVGIIMSGQGGSRRQATQRAGRVMRPFG 512
>gi|433638605|ref|YP_007284365.1| DNA/RNA helicase, superfamily II [Halovivax ruber XH-70]
gi|433290409|gb|AGB16232.1| DNA/RNA helicase, superfamily II [Halovivax ruber XH-70]
Length = 637
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 112/398 (28%), Positives = 187/398 (46%), Gaps = 38/398 (9%)
Query: 10 DNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69
D +P L++EL R YQ + + G +G++V P G+GK++ + A R+
Sbjct: 260 DGGDP-LDLELT--VSLRDYQRTWVERFDDQG---AGVLVGPPGSGKTVAAMGAMERVGG 313
Query: 70 SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGK 129
L L + QWA +T+ QI ++ KE R V + TY +
Sbjct: 314 ETLVLVPSRDLARQWADALAADTTLDPAQIGQYHGGQKE-IRP---VTIATYQIAGMDRH 369
Query: 130 RSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERIT 189
RS +REWGL + DEVH VP+ ++R+ L +S +LGL+A+ +REDER
Sbjct: 370 RSL--------FDDREWGLTIFDEVHHVPSDVYRRATHL-QSRYRLGLSASPIREDERQA 420
Query: 190 DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249
++ L+GP + +W L GF+A + + P E + + + +++ + N
Sbjct: 421 EIFTLVGPPIG-TDWDALFDAGFVAEPELEIRYVPWADEAGNAHAAA-DGRERYRIAAEN 478
Query: 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAF 309
P K L+ H + ++F + L E + L P + G T H ER ++L+AF
Sbjct: 479 PAKIHEVRTLLAAHPS---GQALIFVEYLDQGRELSDALSIPFLSGETPHHERQRLLEAF 535
Query: 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 369
+ + + +S+VGD +D+P A++ I S GSRRQ QR GR +R G
Sbjct: 536 RAG-ERQQLIVSRVGDEGLDLPTADLAIIASGLGGSRRQGTQRAGRTMRPAG-------- 586
Query: 370 GKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + ++E ++ ++ Q L +G S +
Sbjct: 587 -----GALVYVLATRGSREEDFARRQLQHLGRKGISVR 619
>gi|448393729|ref|ZP_21567788.1| type III restriction protein res subunit [Haloterrigena salina JCM
13891]
gi|445663332|gb|ELZ16084.1| type III restriction protein res subunit [Haloterrigena salina JCM
13891]
Length = 659
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 104/366 (28%), Positives = 171/366 (46%), Gaps = 33/366 (9%)
Query: 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102
A G+ V P G+GK++ + A ++ L L + QWA +++++ +QI ++
Sbjct: 289 AGEGVFVGPPGSGKTVAAMGAMAHVEGETLILVPSRDLARQWADTILEYTSLEPEQIGQY 348
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162
KE V + TY + RS +REWGL++ DE VP+ ++
Sbjct: 349 HGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREWGLVIFDECQHVPSDVY 396
Query: 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222
R+ L H +LGL+A+ +RED+R ++ L+GP + +W L + GF+A + +
Sbjct: 397 RRSTHLQSKH-RLGLSASPIREDDRQQEIFTLVGPPIG-TDWEALFEAGFVAEPELEIRY 454
Query: 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
P + + ++K + N K +L+ H K +VF D L
Sbjct: 455 VPWGDDEQGNAYASADGQEKYRIAAKNRGKVDEVRYLLSAHPDS---KALVFVDYLEQGK 511
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341
E + L P + G T H ER ++L F+ RDL + +S+VGD ID+P A++ I S
Sbjct: 512 ELSSALDVPFLSGETPHHERRRLLDEFRRNERDL--LIVSRVGDEGIDLPTADLAIVASG 569
Query: 342 HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
GSRRQ QR GR +R G A Y L + T+E ++ K+ Q L
Sbjct: 570 LGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRGTREEDFARKQLQHLGR 616
Query: 402 QGYSFK 407
+G + +
Sbjct: 617 KGMTIR 622
>gi|448329809|ref|ZP_21519105.1| type III restriction protein res subunit [Natrinema versiforme JCM
10478]
gi|445613428|gb|ELY67129.1| type III restriction protein res subunit [Natrinema versiforme JCM
10478]
Length = 640
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 170/369 (46%), Gaps = 33/369 (8%)
Query: 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102
A G+ V P G+GK++ + A + L L + QWA +++++ QI ++
Sbjct: 298 AGEGVFVGPPGSGKTVAAMGAMAHVDGETLVLVPSRDLAQQWADTILEYTSLEAHQIGQY 357
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162
KE V + TY + RS +REWGL++ DE VP+ ++
Sbjct: 358 HGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREWGLVIFDECQHVPSDVY 405
Query: 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222
R+ L H +LGL+A+ +RED+R T++ L+GP + +W L G +A + +
Sbjct: 406 RRSTHLQSKH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGHVAEPELEIRY 463
Query: 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
P + + + ++K + N K +L+ H K IVF D L
Sbjct: 464 VPWGDDEQANAYGSADGREKYRIAARNRGKIDEVRYLLSAHPDA---KAIVFVDYLEQGR 520
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341
E + L P + G T H ER ++L F+ RDL + +S+VGD ID+P A++ I S
Sbjct: 521 ELSEALEVPFLSGETPHHERRRLLDEFRRDERDL--LLISRVGDEGIDLPTADLAIVASG 578
Query: 342 HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
GSRRQ QR GR +R G A Y L + T+E ++ K+ Q L
Sbjct: 579 LGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRGTREEDFARKQLQHLGR 625
Query: 402 QGYSFKVIT 410
+G + + T
Sbjct: 626 KGMTVREQT 634
>gi|448576276|ref|ZP_21642319.1| DNA repair helicase Rad25 [Haloferax larsenii JCM 13917]
gi|445729956|gb|ELZ81550.1| DNA repair helicase Rad25 [Haloferax larsenii JCM 13917]
Length = 661
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 103/378 (27%), Positives = 171/378 (45%), Gaps = 36/378 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + R+G++V P G+GK++ G+ A + L L + QW
Sbjct: 271 RGYQQDWVDRFLDQ---RAGVLVGPPGSGKTIAGIGALAAVGGETLILVPSRELARQWRE 327
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + + +DQI + KE V + TY RS +R W
Sbjct: 328 ELLTNTDLSEDQIGEYHGGVKE----IRPVTIATYQTAGMDRHRSL--------FDSRRW 375
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE H +P+ +F++ L H +LGL+AT +RED++ ++ L+GP + +W
Sbjct: 376 GLIVYDEAHHIPSRVFQRSADLQSKH-RLGLSATPIREDDKEAEIFTLVGPPI-GTDWGK 433
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK-FRACEFLIRFHEQ 265
L G++ + + + + +++ L MNP K F A R +
Sbjct: 434 LFDAGYVQEPEVEIRYVGWADDMARNEWASSDGRERHMLAAMNPAKVFEARRLRARHPDS 493
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
K ++F D L E A L P + G T H R ++F+ DL+T+ +S++GD
Sbjct: 494 ----KTLIFVDYLDQGEEIADALDVPFVSGETRHHHREGYFKSFRDG-DLDTLVISRIGD 548
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A + I S GSRRQ +QR GR +R G +A Y L +
Sbjct: 549 EGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAG-------------SALVYVLATRG 595
Query: 386 TQEMFYSTKRQQFLIDQG 403
T E ++ ++ Q L +G
Sbjct: 596 TSEEDFAQRQMQHLAGKG 613
>gi|383625406|ref|ZP_09949812.1| type III restriction protein res subunit [Halobiforma lacisalsi
AJ5]
gi|448700385|ref|ZP_21699493.1| type III restriction protein res subunit [Halobiforma lacisalsi
AJ5]
gi|445779925|gb|EMA30840.1| type III restriction protein res subunit [Halobiforma lacisalsi
AJ5]
Length = 651
Score = 155 bits (392), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 114/409 (27%), Positives = 181/409 (44%), Gaps = 42/409 (10%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ + + G G+ V P G+GK++ + A +
Sbjct: 274 GDALEVDLEVSL------RDYQRTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMAEVG 324
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QWA ++++ Q+ ++ K V + TY +
Sbjct: 325 GETLVLVPSRDLARQWADAVVEYTSLGPHQVGQYHGGQK----NVRPVTIATYQIAGMDR 380
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED+R
Sbjct: 381 HRSL--------FDDREWGLVIFDECQHVPSDVYRRSTHLQSQH-RLGLSASPIREDDRQ 431
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
T++ L+GP + +W L GF+A + + P + ++K +
Sbjct: 432 TEIFTLVGPPIG-TDWQALFDAGFVAEPELEIRYVPWGDDEQRNAYASAEGQEKYRIAAR 490
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
N K FL+R H K +VF D L E A L P + G T H ER ++L
Sbjct: 491 NRGKVDEVRFLLRDHHDA---KALVFVDYLAQGRELAEALDAPFLSGETPHHERRRLLDE 547
Query: 309 FK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367
F+ RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 548 FRRNERDL--LIVSRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG------ 599
Query: 368 AGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPPPD 416
A Y L + ++E ++ ++ Q L +G + + T PD
Sbjct: 600 -------GALVYVLATRGSREEEFARRQLQHLGRKGMTVRERTVDREPD 641
>gi|110668437|ref|YP_658248.1| DNA repair helicase [Haloquadratum walsbyi DSM 16790]
gi|109626184|emb|CAJ52640.1| DNA repair helicase Rad25 [Haloquadratum walsbyi DSM 16790]
Length = 692
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 173/380 (45%), Gaps = 34/380 (8%)
Query: 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
A+ R YQ+ ++ R+G++V P G+GK++ + A I L L + Q
Sbjct: 334 AELRSYQQDWVNNFLDQ---RAGVLVGPSGSGKTVTAIGALAAIGGETLILVPSRELASQ 390
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN 143
W + + + DDQI + K V + TY RS +
Sbjct: 391 WRAELIQHTDLNDDQIGEYHGGKKT----VQSVTIATYQTAGMDRHRSL--------FDS 438
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
REWGL++ DEVH +PA ++R+ L H +LGL+AT VRED++ T++ L+GP + +
Sbjct: 439 REWGLIIYDEVHHIPAAVYRRSADLQTKH-RLGLSATPVREDDKETEIFTLVGPPIG-TD 496
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W L + G++ + P E + + ++ L NP K + L+ H
Sbjct: 497 WSALFEAGYVQEPYVEIQYVPWKDELSQNEWANADGRDRRRLAAENPQKITTTKKLLGMH 556
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
+VF + L A L P + G H R ++ ++F+ +++ + +S+V
Sbjct: 557 SDASA---LVFVEWLDHGEALADALDAPFVSGEMPHYRRDQVFESFRDD-EISVLVISRV 612
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
GD ID+P A + + S GSRRQ AQR GR +R G +A Y L +
Sbjct: 613 GDEGIDLPNAELAVVASGLGGSRRQGAQRAGRTMRPTG-------------SAQVYVLAT 659
Query: 384 TDTQEMFYSTKRQQFLIDQG 403
T E ++ ++ + L ++G
Sbjct: 660 RGTTEEEFAQRQLRHLAEKG 679
>gi|448591575|ref|ZP_21651063.1| DNA repair helicase Rad25 [Haloferax elongans ATCC BAA-1513]
gi|445733549|gb|ELZ85118.1| DNA repair helicase Rad25 [Haloferax elongans ATCC BAA-1513]
Length = 717
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 172/382 (45%), Gaps = 36/382 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + R+G++V P G+GK++ G+ A + L L + QW
Sbjct: 314 RGYQQDWVDRFL---EQRAGVLVGPPGSGKTIAGIGALAAVGGETLILVPSRELARQWHE 370
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + + DQI + KE R V + TY RS +R W
Sbjct: 371 ELLANTDLSADQIGEYHGGVKE-IRP---VTIATYQTAGMDRHRSL--------FDSRRW 418
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE H +P+ +F++ L H +LGL+AT +RED++ ++ L+GP + +W
Sbjct: 419 GLIIYDEAHHIPSRVFQRSADLQSKH-RLGLSATPIREDDKEAEIFTLVGPPIG-TDWGK 476
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK-FRACEFLIRFHEQ 265
L G++ + + + + +++ L MNP K F A R +
Sbjct: 477 LFDAGYVQEPEVEIRYVGWADDMARNEWASSDGRERHMLAAMNPAKVFEARRLRARHPDS 536
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
K ++F D L E A L P + G T H R ++F+ DL+T+ +S++GD
Sbjct: 537 ----KTLIFVDYLDQGEEIADALDVPFVSGETRHHHREGYFKSFRDG-DLDTLVISRIGD 591
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A + I S GSRRQ +QR GR +R G +A Y L +
Sbjct: 592 EGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPAG-------------SALVYVLATRG 638
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T E ++ ++ Q L +G +
Sbjct: 639 TSEEDFAQRQMQHLAGKGIRVR 660
>gi|448373607|ref|ZP_21557693.1| type III restriction protein res subunit [Halovivax asiaticus JCM
14624]
gi|445661559|gb|ELZ14342.1| type III restriction protein res subunit [Halovivax asiaticus JCM
14624]
Length = 638
Score = 154 bits (390), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 111/398 (27%), Positives = 185/398 (46%), Gaps = 38/398 (9%)
Query: 10 DNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69
D +P L++EL R YQ + + G +G++V P G+GK++ + A R+
Sbjct: 260 DGGDP-LDLELT--VSLRDYQRTWVERFDDQG---AGVLVGPPGSGKTVAAMGAMERVGG 313
Query: 70 SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGK 129
L L + QWA +T+ QI ++ KE R V + TY +
Sbjct: 314 ETLVLVPSRDLARQWADALAADTTLDPAQIGQYHGGQKE-IRP---VTIATYQIAGMDRH 369
Query: 130 RSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERIT 189
RS +REWGL + DEVH VP+ ++R+ L +S +LGL+A+ +REDER
Sbjct: 370 RSL--------FDDREWGLTIFDEVHHVPSDVYRRATHL-QSRYRLGLSASPIREDERQA 420
Query: 190 DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249
++ L+GP + +W L GF+A + + P E + + + +++ + N
Sbjct: 421 EIFTLVGPPIG-TDWDALFDAGFVAEPELEIRYVPWADEAGNAHAAA-DGRERYRIAAEN 478
Query: 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAF 309
P K L+ H + ++F + L E + L P + G T H ER ++L F
Sbjct: 479 PAKIHEVRTLLAAHPSG---QALIFVEYLDQGRELSDALSIPFLSGETPHHERQRLLDEF 535
Query: 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 369
+ + + +S+VGD +D+P A++ I S GSRRQ QR GR +R G
Sbjct: 536 RAG-ECQQLLVSRVGDEGLDLPTADLAIIASGLGGSRRQGTQRAGRTMRPAG-------- 586
Query: 370 GKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + ++E ++ ++ Q L +G S +
Sbjct: 587 -----GALVYVLATRGSREEDFARRQLQHLGRKGISVR 619
>gi|284176145|ref|YP_003406422.1| type III restriction protein res subunit [Haloterrigena turkmenica
DSM 5511]
gi|284017802|gb|ADB63749.1| type III restriction protein res subunit [Haloterrigena turkmenica
DSM 5511]
Length = 666
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 113/403 (28%), Positives = 182/403 (45%), Gaps = 37/403 (9%)
Query: 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102
A G+ V P G+GK++ + A + L L + QWA +++++ +QI ++
Sbjct: 293 AGEGVFVGPPGSGKTVAAMGAMAHVDGETLILVPSRDLARQWADTILEYTSLEPEQIGQY 352
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162
KE V + TY + RS +REWGL++ DE VP+ ++
Sbjct: 353 HGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREWGLVIFDECQHVPSDVY 400
Query: 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222
R+ L H +LGL+A+ +RED+R ++ L+GP + +W L + GF+A + +
Sbjct: 401 RRSTHLQSKH-RLGLSASPIREDDRQQEIFTLVGPPIG-TDWEALFEAGFVAEPELEIRY 458
Query: 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
P + + ++K + N K +L+ H K +VF D L
Sbjct: 459 VPWGDDEQGNAYASADGQEKYRIAAKNRGKVDEVRYLLSAHPDS---KALVFVDYLEQGK 515
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341
+ + L P + G T H ER ++L F+ RDL + +S+VGD ID+P A++ I S
Sbjct: 516 DLSAALDVPFLSGETPHHERRRLLDEFRRNERDL--LIVSRVGDEGIDLPTADLAIVASG 573
Query: 342 HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
GSRRQ QR GR +R G A Y L + T+E ++ K+ Q L
Sbjct: 574 LGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRGTREEDFARKQLQHLGR 620
Query: 402 QGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAV 444
+G + + S AD + DE G S GDD +
Sbjct: 621 KGMTIREQNVERDEGSEADDA----DETDEKDGNGTSDGDDEI 659
>gi|90658431|gb|ABD97114.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658433|gb|ABD97115.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658435|gb|ABD97116.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658437|gb|ABD97117.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658439|gb|ABD97118.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658441|gb|ABD97119.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658443|gb|ABD97120.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658445|gb|ABD97121.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658447|gb|ABD97122.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658449|gb|ABD97123.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658451|gb|ABD97124.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
gi|90658453|gb|ABD97125.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658455|gb|ABD97126.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658457|gb|ABD97127.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658459|gb|ABD97128.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658461|gb|ABD97129.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658463|gb|ABD97130.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658465|gb|ABD97131.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658467|gb|ABD97132.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. grubii]
gi|90658469|gb|ABD97133.1| general RNA polymerase II transcription factor [Cryptococcus
neoformans var. neoformans]
Length = 102
Score = 153 bits (387), Expect = 2e-34, Method: Composition-based stats.
Identities = 71/103 (68%), Positives = 81/103 (78%), Gaps = 1/103 (0%)
Query: 153 EVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGF 212
EVHV PA MFRK I+ K H KLGLTATLVRED+RI DL +LIGPKLYEANW+DL K G
Sbjct: 1 EVHVTPADMFRKCINNFKVHAKLGLTATLVREDDRIGDLGYLIGPKLYEANWMDLAKNGH 60
Query: 213 IANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255
IA VQCAEVWCPMT EF+ EYL+ S+K+ L+ MNPNK +A
Sbjct: 61 IATVQCAEVWCPMTPEFYREYLRNP-SRKRILLHAMNPNKIQA 102
>gi|385803900|ref|YP_005840300.1| DNA repair helicase Rad25 [Haloquadratum walsbyi C23]
gi|339729392|emb|CCC40640.1| DNA repair helicase Rad25 [Haloquadratum walsbyi C23]
Length = 690
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/380 (26%), Positives = 173/380 (45%), Gaps = 34/380 (8%)
Query: 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83
A+ R YQ+ ++ R+G++V P G+GK++ + A I L L + Q
Sbjct: 332 AELRSYQQDWVNNFLDQ---RAGVLVGPSGSGKTVTAIGALAAIGGETLILVPSRELASQ 388
Query: 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN 143
W + + + +DQI + K V + TY RS +
Sbjct: 389 WRAELIQHTDLNNDQIGEYHGGKKT----VQSVTIATYQTAGMDRHRSL--------FDS 436
Query: 144 REWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEAN 203
REWGL++ DEVH +PA ++R+ L H +LGL+AT VRED++ T++ L+GP + +
Sbjct: 437 REWGLIIYDEVHHIPAAVYRRSADLQTKH-RLGLSATPVREDDKETEIFTLVGPPIG-TD 494
Query: 204 WLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFH 263
W L + G++ + P E + + ++ L NP K + L+ H
Sbjct: 495 WSALFEAGYVQEPYVEIQYVPWKDELSQNEWANADGRDRRRLAAENPQKITTTKKLLGMH 554
Query: 264 EQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323
+VF + L A L P + G H R ++ ++F+ +++ + +S+V
Sbjct: 555 SDASA---LVFVEWLDHGEALADALDAPFVSGEMPHYRRDQVFESFRDD-EISVLVISRV 610
Query: 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383
GD ID+P A + + S GSRRQ AQR GR +R G +A Y L +
Sbjct: 611 GDEGIDLPNAELAVVASGLGGSRRQGAQRAGRTMRPTG-------------SAQVYVLAT 657
Query: 384 TDTQEMFYSTKRQQFLIDQG 403
T E ++ ++ + L ++G
Sbjct: 658 RGTTEEEFAQRQLRHLAEKG 677
>gi|70607084|ref|YP_255954.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius DSM 639]
gi|68567732|gb|AAY80661.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius DSM 639]
Length = 467
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 209/412 (50%), Gaps = 60/412 (14%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L++E K + R YQ+++LSK G SG+I LP GAGK+L+G+SAAC +K+S L +
Sbjct: 76 LDIEFK--GELREYQKEALSKWLEKG---SGVIALPTGAGKTLIGISAACAVKQSTLIVT 130
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE 135
+ QW F ++ I+ +I + S+ KE + V+TY + +
Sbjct: 131 YTKEQMLQWRDAFIRFTNIEKRKIGLYYSEKKE----IKPITVSTY----------QTAY 176
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
+ I+E+ + ++ +L++DE H +PA F+++ + + +LGL+AT R+D + +L +
Sbjct: 177 RHIQEL-SYKFDVLVIDEAHHLPAEKFKRIALNSIATKRLGLSATPYRDDGKHEELFKFM 235
Query: 196 GPKLYEANWLDLVKGGFIA-------NVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
G +Y + +L++ G++A VQ + M E +++ K S+K L ++
Sbjct: 236 GGLIYFKSPQELIEKGYLAPYEVVQEKVQLSIDERMMYNELLNKFKKYSRSRKVSELLML 295
Query: 249 NP-------------NKFR--------ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK 287
N R + + R E+++G+KI++F + E A
Sbjct: 296 AKKGDSDAIEALKIYNDMRKLVNLAKQKIDAVKRIVEKEKGNKILIFTQYVDQAEEIART 355
Query: 288 LRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRR 347
+ +I G S ER +IL FK + + L+ VGD +DIP+ANV I I + GSRR
Sbjct: 356 INGLLITGKISKSERERILNIFKSMKS-GVLVLTTVGDEGLDIPDANVGI-IVTGTGSRR 413
Query: 348 QEAQRLGRILRA----KGKLEDRMA-GGKEEYNAFFYSLVSTDTQ-EMFYST 393
Q QRLGR+LR K +L + M G EEY A L +TQ +MF S+
Sbjct: 414 QFIQRLGRLLRPGVDKKARLYEIMVRGTAEEYQA----LKRKETQMDMFLSS 461
>gi|336254456|ref|YP_004597563.1| type III restriction protein res subunit [Halopiger xanaduensis
SH-6]
gi|335338445|gb|AEH37684.1| type III restriction protein res subunit [Halopiger xanaduensis
SH-6]
Length = 654
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 114/407 (28%), Positives = 185/407 (45%), Gaps = 40/407 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ DL ++L+ R YQ+ + + G G+ V P G+GK++ + A
Sbjct: 246 DHRDLESGEDLEIDLE--VTLRDYQQTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 300
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA + ++++ QI ++ K V + TY +
Sbjct: 301 HVGGETLVLVPSRDLARQWADTIQEYTSLGPHQIGQYHGGQK----NVRPVTIATYQIAG 356
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 357 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 407
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TKEFFSEYLKKENSKKKQA 244
+R ++ L+GP + +W L GF+A + + P E + Y+ E ++K
Sbjct: 408 DRQKEIFTLVGPPIG-TDWQALFDAGFVAEPELEIRYVPWGDDEQRNAYVSAEG-REKYR 465
Query: 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTK 304
+ N K +L+ H K +VF D L E + L P I G T H ER +
Sbjct: 466 IAAENRGKVDEIRYLLSAHPDS---KALVFVDYLEQGRELSDALDAPFISGETRHHERRR 522
Query: 305 ILQAFK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363
+ F+ RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 523 LFDEFRRNERDL--LVISRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-- 578
Query: 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ ++ Q L +G + + T
Sbjct: 579 -----------GALVYVLATRGTREEDFARRQLQHLGRKGMTVREQT 614
>gi|449067324|ref|YP_007434406.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius N8]
gi|449069594|ref|YP_007436675.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius Ron12/I]
gi|449035832|gb|AGE71258.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius N8]
gi|449038102|gb|AGE73527.1| XPB/RAD25-related helicase [Sulfolobus acidocaldarius Ron12/I]
Length = 543
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 126/412 (30%), Positives = 209/412 (50%), Gaps = 60/412 (14%)
Query: 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75
L++E K + R YQ+++LSK G SG+I LP GAGK+L+G+SAAC +K+S L +
Sbjct: 152 LDIEFK--GELREYQKEALSKWLEKG---SGVIALPTGAGKTLIGISAACAVKQSTLIVT 206
Query: 76 TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESE 135
+ QW F ++ I+ +I + S+ KE + V+TY + +
Sbjct: 207 YTKEQMLQWRDAFIRFTNIEKRKIGLYYSEKKE----IKPITVSTY----------QTAY 252
Query: 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI 195
+ I+E+ + ++ +L++DE H +PA F+++ + + +LGL+AT R+D + +L +
Sbjct: 253 RHIQEL-SYKFDVLVIDEAHHLPAEKFKRIALNSIATKRLGLSATPYRDDGKHEELFKFM 311
Query: 196 GPKLYEANWLDLVKGGFIA-------NVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
G +Y + +L++ G++A VQ + M E +++ K S+K L ++
Sbjct: 312 GGLIYFKSPQELIEKGYLAPYEVVQEKVQLSIDERMMYNELLNKFKKYSRSRKVSELLML 371
Query: 249 NP-------------NKFR--------ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK 287
N R + + R E+++G+KI++F + E A
Sbjct: 372 AKKGDSDAIEALKIYNDMRKLVNLAKQKIDAVKRIVEKEKGNKILIFTQYVDQAEEIART 431
Query: 288 LRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRR 347
+ +I G S ER +IL FK + + L+ VGD +DIP+ANV I I + GSRR
Sbjct: 432 INGLLITGKISKSERERILNIFKSMKS-GVLVLTTVGDEGLDIPDANVGI-IVTGTGSRR 489
Query: 348 QEAQRLGRILRA----KGKLEDRMA-GGKEEYNAFFYSLVSTDTQ-EMFYST 393
Q QRLGR+LR K +L + M G EEY A L +TQ +MF S+
Sbjct: 490 QFIQRLGRLLRPGVDKKARLYEIMVRGTAEEYQA----LKRKETQMDMFLSS 537
>gi|16554496|ref|NP_444220.1| helicase [Halobacterium sp. NRC-1]
Length = 524
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 175/390 (44%), Gaps = 42/390 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
DL+++L RPYQ+ + + A +G++V P G+GK++ + A + L L
Sbjct: 164 DLHLDL------RPYQQDWVDRFED---ASAGVLVGPPGSGKTVAAMGALESVGGETLVL 214
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
+ QW + +++ DQI + K R R V + TY R
Sbjct: 215 VPSRELATQWREELLANTSLTGDQIGEYHGGEK-RVRP---VTIATYQTAGMDRHR---- 266
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+REWGL++ DEVH +PA + R+ SL H +LGLTAT VRED++ D+ L
Sbjct: 267 ----HVFDDREWGLIVYDEVHHIPAEVARRSASLQSKH-RLGLTATPVREDDKEADIYTL 321
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254
+G + +W L GF+A + + P + + ++ L NP K
Sbjct: 322 VG-RPIGTDWDALFDAGFVAEPEVEIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEA 380
Query: 255 ACEFLIRFHEQQRGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
E L+ Q GD + +VF D L A +L P + G T H R F+
Sbjct: 381 EIEHLV----DQHGDTQALVFVDYLSQGERIAERLDAPFVNGETPHSRRETHFDQFRTGA 436
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
L+ + +S++GD ID+P+A + S GSRRQ AQR GR +R +
Sbjct: 437 -LDALVVSRIGDEGIDLPDAEFAVVASGLGGSRRQGAQRAGRTMRPGSQ----------- 484
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
+ + L + T+E ++ R + L +G
Sbjct: 485 --SLLFVLATRGTEEEDHARSRMRHLSTKG 512
>gi|400293000|ref|ZP_10794891.1| type III restriction enzyme, res subunit, partial [Actinomyces
naeslundii str. Howell 279]
gi|399901890|gb|EJN84754.1| type III restriction enzyme, res subunit, partial [Actinomyces
naeslundii str. Howell 279]
Length = 449
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 142/267 (53%), Gaps = 15/267 (5%)
Query: 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84
Q RPYQ +++ + G SG++VLPCGAGK+L G ++ + + L L TNAVS QW
Sbjct: 197 QLRPYQSEAVESFWAGG---SGVVVLPCGAGKTLAGAASMAKSSTTTLILVTNAVSARQW 253
Query: 85 AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR 144
+ ++T+ +D+I ++ KE V + TY ++ R + ++ + +
Sbjct: 254 KEELMRFTTLTEDEIGEYSGSRKE----VRPVTIATYQVLT---TRRKGVYPHLDLLDSH 306
Query: 145 EWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANW 204
+WGL++ DEVH++PA +FR L ++ +LGLTATLVRED R ++ LIGPK Y+A W
Sbjct: 307 DWGLIVYDEVHLLPAPIFRMTADL-QARRRLGLTATLVREDGREDEVFSLIGPKRYDAPW 365
Query: 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264
DL G+IA C EV + Y E ++ + L +P K + L+ HE
Sbjct: 366 KDLENQGWIAPAICTEVRLTLDAGERMAYATAEPEERYR-LAACSPRKLPIIDALLARHE 424
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKP 291
G+ +V + LTE A L P
Sbjct: 425 ---GESALVIGQYVDQLTEIAEHLGAP 448
>gi|448362999|ref|ZP_21551603.1| type III restriction protein res subunit [Natrialba asiatica DSM
12278]
gi|445647621|gb|ELZ00595.1| type III restriction protein res subunit [Natrialba asiatica DSM
12278]
Length = 665
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 174/385 (45%), Gaps = 36/385 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G G+ V P G+GK++ + A ++ L L + QWA
Sbjct: 305 REYQQTWIDRFAEAG---EGVFVGPPGSGKTVAAMGAMAHVEGETLVLVPSRDLARQWAE 361
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
++++ QI ++ K V + TY + RS +REW
Sbjct: 362 TLAEFTSLAPHQIGQYHGGQK----NVRPVTIATYQIAGMDRHRSL--------FDDREW 409
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 410 GLVIFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWQA 467
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GF+A + + P + +++ + N K +L+ +
Sbjct: 468 LFDDGFVAEPELEIRYVPWGDDEQQNAYASAEGRERYRIAAQNRGKIDEIRYLL---AAE 524
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFK-CSRDLNTIFLSKVGD 325
K ++F D L E A L P + G T H ER ++L F+ RDL + +S+VGD
Sbjct: 525 PNSKALIFVDYLDQGGELATALDVPFLSGETPHHERRRLLDEFRRDERDL--LIVSRVGD 582
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 583 EGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 629
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVIT 410
T+E ++ ++ Q L +G + + T
Sbjct: 630 TREEDFARRQLQHLGRKGMTVREET 654
>gi|452211505|ref|YP_007491619.1| DNA repair helicase [Methanosarcina mazei Tuc01]
gi|452101407|gb|AGF98347.1| DNA repair helicase [Methanosarcina mazei Tuc01]
Length = 457
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 126/417 (30%), Positives = 192/417 (46%), Gaps = 59/417 (14%)
Query: 6 DFRNDNVN----PDLNMELKPHAQP---RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSL 58
DF +D ++ PDL + + R YQ ++L NG+ G++VLP G+GK+L
Sbjct: 51 DFEDDALDLLPCPDLAAAYEASGKKLKLRDYQAEALISWGENGK--RGVLVLPTGSGKTL 108
Query: 59 VGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118
G+ A L + ++QW + + +++ I + K+ V V
Sbjct: 109 TGIRAIAGCNTPALVVVPTLDLLEQWKKELEEAFSME---IGKLGGGDKKIL----PVTV 161
Query: 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178
+TY+ S I E +GL++ DEVH +PA +R + + + C+LGLT
Sbjct: 162 STYD-----------SAYIHAETLGNRFGLIIFDEVHHLPAAGYRSIAEFSAAPCRLGLT 210
Query: 179 ATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK-- 236
AT RED T+LN L+G K+YE +L GG +A V +T E EY KK
Sbjct: 211 ATYEREDGLHTELNRLVGGKVYEKKVSELA-GGHLAPYTIKRVSIALTDEEQKEYEKKYS 269
Query: 237 ----------ENSKKKQALYVMNP------NKFRACEFLIRFHEQQRGDKIIVFADNLFA 280
+ + ++AL N N E L EQ R D+I +F ++
Sbjct: 270 VLQKLVMKSGRDPEARKALLARNAARDLAFNSDSKIEKLREILEQHRDDRIFIFTEHNRL 329
Query: 281 LTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340
+ + P I T ER+ IL+ F+ R + SKV D ID+PEAN+ I I+
Sbjct: 330 VHRISNSFFIPAITYRTPSKERSSILEKFREGR-YRAVVTSKVLDEGIDVPEANIGI-IA 387
Query: 341 SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397
S GS+R QRLGRILR K GKE A Y +++ +T E + +R++
Sbjct: 388 SGTGSKRAYVQRLGRILRKK--------EGKE---AVLYEIIAEETTETGTAKRRKE 433
>gi|169236157|ref|YP_001689357.1| DNA repair helicase [Halobacterium salinarum R1]
gi|167727223|emb|CAP14009.1| DNA repair helicase Rad25 [Halobacterium salinarum R1]
Length = 600
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 110/390 (28%), Positives = 175/390 (44%), Gaps = 42/390 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
DL+++L RPYQ+ + + A +G++V P G+GK++ + A + L L
Sbjct: 240 DLHLDL------RPYQQDWVDRFED---ASAGVLVGPPGSGKTVAAMGALESVGGETLVL 290
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
+ QW + +++ DQI + K R R V + TY R
Sbjct: 291 VPSRELATQWREELLANTSLTGDQIGEYHGGEK-RVRP---VTIATYQTAGMDRHR---- 342
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+REWGL++ DEVH +PA + R+ SL H +LGLTAT VRED++ D+ L
Sbjct: 343 ----HVFDDREWGLIVYDEVHHIPAEVARRSASLQSKH-RLGLTATPVREDDKEADIYTL 397
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254
+G + +W L GF+A + + P + + ++ L NP K
Sbjct: 398 VG-RPIGTDWDALFDAGFVAEPEVEIRYVPWRDDDDRYEYAAASGHTRRRLAAENPAKEA 456
Query: 255 ACEFLIRFHEQQRGD-KIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSR 313
E L+ Q GD + +VF D L A +L P + G T H R F+
Sbjct: 457 EIEHLV----DQHGDTQALVFVDYLSQGERIAERLDAPFVNGETPHSRRETHFDQFRTGA 512
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
L+ + +S++GD ID+P+A + S GSRRQ AQR GR +R +
Sbjct: 513 -LDALVVSRIGDEGIDLPDAEFAVVASGLGGSRRQGAQRAGRTMRPGSQ----------- 560
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
+ + L + T+E ++ R + L +G
Sbjct: 561 --SLLFVLATRGTEEEDHARSRMRHLSTKG 588
>gi|448399557|ref|ZP_21570817.1| type III restriction protein res subunit [Haloterrigena limicola
JCM 13563]
gi|445668574|gb|ELZ21201.1| type III restriction protein res subunit [Haloterrigena limicola
JCM 13563]
Length = 638
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 111/397 (27%), Positives = 181/397 (45%), Gaps = 42/397 (10%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
DLN+ L R YQ+ + + G G+ V P G+GK++ + A ++ L L
Sbjct: 277 DLNVRL------RDYQQNWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMAHVEGETLVL 327
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
+ QWA +++++ QI ++ KE V + TY + RS
Sbjct: 328 VPSRDLAQQWADAMVEYTSLEPHQIGQYHGGRKE----VRPVTIATYQIAGMDRHRSL-- 381
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L
Sbjct: 382 ------FDDREWGLVIFDECQHVPSDVYRRSTHLQSKH-RLGLSASPIREDDRQTEIFTL 434
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254
+GP + +W L + GF+A + + P + + + ++K + N K
Sbjct: 435 VGPPIG-TDWEALFEAGFVAEPELEIRYVPWGDDEQANAYGSADGREKYRIAAKNRGKID 493
Query: 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTKILQAFKCSR 313
+L+ H K IVF D L E + L P + G T H R + + + R
Sbjct: 494 EVRYLLSAHPDA---KAIVFVDYLEQGRELSDALEVPFLSGETPHHERRRLLEEFRRDER 550
Query: 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE 373
DL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 551 DL--LIISRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG------------ 596
Query: 374 YNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ K+ Q L +G + + T
Sbjct: 597 -GALVYVLATRGTREEDFARKQLQHLGRKGMTIREQT 632
>gi|385993921|ref|YP_005912219.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5079]
gi|339293875|gb|AEJ45986.1| DNA helicase ercc3 [Mycobacterium tuberculosis CCDC5079]
Length = 240
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 90/239 (37%), Positives = 133/239 (55%), Gaps = 15/239 (6%)
Query: 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229
+S +LGLTATL+RED R D+ LIGPK Y+A W D+ G+IA +C EV MT
Sbjct: 6 QSKRRLGLTATLIREDGREGDVFSLIGPKRYDAPWKDIEAQGWIAPAECVEVRVTMTDSE 65
Query: 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289
Y E ++ + ++ K + ++ H + + +V L L E +L
Sbjct: 66 RMMYATAEPEERYRICSTVH-TKIAVVKSILAKHPDE---QTLVIGAYLDQLDELGAELG 121
Query: 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
P+I G+T ER + AF+ ++ T+ +SKV + SID+PEA V +Q+S GSR++E
Sbjct: 122 APVIQGSTRTSEREALFDAFRRG-EVATLVVSKVANFSIDLPEAAVAVQVSGTFGSRQEE 180
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408
AQRLGRILR K GG A FYS+V+ D+ + Y+ RQ+FL +QGY + +
Sbjct: 181 AQRLGRILRPKAD------GG----GAIFYSVVARDSLDAEYAAHRQRFLAEQGYGYII 229
>gi|289582687|ref|YP_003481153.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
gi|448281886|ref|ZP_21473179.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
gi|289532240|gb|ADD06591.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
gi|445577515|gb|ELY31948.1| type III restriction protein res subunit [Natrialba magadii ATCC
43099]
Length = 649
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 183/403 (45%), Gaps = 38/403 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R L++EL R YQ+ + + G G+ V P G+GK++ + A
Sbjct: 270 DHRELEAGEQLDIELG--VSLRDYQQTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 324
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA + +++++ DQI ++ K V + TY +
Sbjct: 325 HVGGETLVLVPSRDLARQWAEAIEEYTSLEPDQIGQYHGGQK----NVRPVTIATYQIAG 380
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 381 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 431
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L + GF+A + + P + S + +++ +
Sbjct: 432 DRQTEIFTLVGPPIG-TDWQALFEAGFVAEPELEIRYVPWGDDEQSNAYASADGRERYRI 490
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H G K +VF D L + + L P + G T H R
Sbjct: 491 AARNRGKIDEVRYLLSAHP---GSKSLVFVDYLEQGRDLSDALDVPFLSGETPHHERRRL 547
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 548 LEEFRRDERDL--LIVSRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 602
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + T+E ++ ++ Q L +G + +
Sbjct: 603 ----------GALVYVLATRGTREEDFARRQLQHLGRKGMTVR 635
>gi|76154187|gb|AAX25682.2| SJCHGC05686 protein [Schistosoma japonicum]
Length = 124
Score = 146 bits (369), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/85 (71%), Positives = 76/85 (89%)
Query: 153 EVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGF 212
+VH +PA MFR+V++L ++HCKLGLTATLVRED++ITDLNFLIGPKLYEANWL+L + GF
Sbjct: 25 QVHTIPAKMFRRVLTLVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWLELQQRGF 84
Query: 213 IANVQCAEVWCPMTKEFFSEYLKKE 237
IA VQCAEVWCP+T EF+ EYL ++
Sbjct: 85 IARVQCAEVWCPVTPEFYREYLNRK 109
>gi|448302736|ref|ZP_21492709.1| type III restriction protein res subunit [Natronorubrum
sulfidifaciens JCM 14089]
gi|445595309|gb|ELY49420.1| type III restriction protein res subunit [Natronorubrum
sulfidifaciens JCM 14089]
Length = 642
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 111/406 (27%), Positives = 184/406 (45%), Gaps = 38/406 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ L+++L+ + R YQ+ + + G G+ V P G+GK++ + A
Sbjct: 262 DHRDLEAGESLSIDLE--VRLRDYQQTWVDRFAEAG---EGVFVGPPGSGKTIAAMGAMA 316
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA +++++ QI ++ KE V + TY +
Sbjct: 317 HVGGETLVLVPSRDLARQWAESIAEYTSLEPHQIGQYHGGRKE----VRPVTIATYQIAG 372
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 373 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 423
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L + GF+A + + P + + ++K +
Sbjct: 424 DRQTEIFTLVGPPIG-TDWEALFEAGFVAEPELEIRYVPWGDDEQQNAYVSADGREKYRI 482
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H K IVF D L + A L P + G T H R
Sbjct: 483 AAKNRGKIDDVRYLLSAHPDS---KAIVFVDYLEQGRDLAAALDVPFLSGETPHHERRRL 539
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 540 LEEFRRNERDL--LIISRVGDEGIDLPTADLAIIASGLGGSRRQGTQRAGRTMRPAG--- 594
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ K+ Q L +G + + T
Sbjct: 595 ----------GALVYVLATYGTREEDFARKQLQHLGRKGMTIREQT 630
>gi|156319528|ref|XP_001618128.1| hypothetical protein NEMVEDRAFT_v1g155676 [Nematostella vectensis]
gi|156197552|gb|EDO26028.1| predicted protein [Nematostella vectensis]
Length = 109
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 62/96 (64%), Positives = 78/96 (81%)
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
+ + EVH +PA FR+V+++ ++HCKLGLTATLVRED++I DLNFLIGPKLYEANW++
Sbjct: 8 SVFFIAEVHTIPAKQFRRVLTVVQAHCKLGLTATLVREDDKIQDLNFLIGPKLYEANWME 67
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242
L GFIA VQCAEVWCPMT EF+SEYL + K+K
Sbjct: 68 LQNSGFIARVQCAEVWCPMTPEFYSEYLNIKTRKRK 103
>gi|448300808|ref|ZP_21490805.1| type III restriction protein res subunit [Natronorubrum tibetense
GA33]
gi|445584798|gb|ELY39103.1| type III restriction protein res subunit [Natronorubrum tibetense
GA33]
Length = 646
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 183/406 (45%), Gaps = 38/406 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ DL ++L+ R YQ + + G G+ V P G+GK++ + A
Sbjct: 264 DHRDLESGEDLPIDLE--ISLRDYQRTWVDRFAEGG---EGVFVGPPGSGKTIAAMGAMA 318
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA + +++++ QI ++ K+ V + TY +
Sbjct: 319 HVGGETLVLVPSRDLARQWADAIEEYTSLEPHQIGQYHGGRKQ----VRPVTIATYQIAG 374
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 375 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 425
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L + GF+A + + P E + +++ +
Sbjct: 426 DRQTEIFTLVGPPIG-TDWEALFEAGFVAEPELEIRYVPWGDEGQRNAYASADGQERYRI 484
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H K +VF D L + A L P + G T H R
Sbjct: 485 AAKNRGKVDDVRYLLSAHPDA---KALVFVDYLEQGRDLAAALDVPFLSGETPHHERRRL 541
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 542 LEEFRRNERDL--LVISRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 596
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ K+ Q L +G + + T
Sbjct: 597 ----------GALVYVLATRGTREEDFARKQLQHLGRKGMTIREQT 632
>gi|448323084|ref|ZP_21512549.1| type III restriction protein res subunit [Natronococcus
amylolyticus DSM 10524]
gi|445600713|gb|ELY54719.1| type III restriction protein res subunit [Natronococcus
amylolyticus DSM 10524]
Length = 649
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 180/403 (44%), Gaps = 38/403 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ +L ++L+ R YQ + + + G G+ V P G+GK++ + A
Sbjct: 272 DHRDLESGEELEIDLE--VSLRDYQREWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 326
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA + ++++ QI ++ K V + TY +
Sbjct: 327 HVGGETLVLVPSRDLARQWAETIEEYTSLSHHQIGQYHGGQK----NVRPVTIATYQIAG 382
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 383 MDRHRSL--------FDDREWGLVVFDECQHVPSDIYRRSTHLQSRH-RLGLSASPIRED 433
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L GF+A + + P E ++K +
Sbjct: 434 DRQTEIFTLVGPPIG-TDWEALFDAGFVAEPELEIRYVPWGDEEQGNAYGSAEGREKYRI 492
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H G K +VF D L E A L P + G T H R
Sbjct: 493 AAQNRGKIDEVRYLLSAHP---GAKSLVFVDYLEQGRELADALDVPFLSGETPHHERRRL 549
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 550 LEEFRRDERDL--LVISRVGDEGIDLPTADMAIVASGLGGSRRQGTQRAGRTMRPAG--- 604
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + T+E ++ ++ Q L +G + +
Sbjct: 605 ----------GALVYVLATRGTREEEFARRQLQHLGRKGITVR 637
>gi|257389185|ref|YP_003178958.1| type III restriction protein res subunit [Halomicrobium mukohataei
DSM 12286]
gi|257171492|gb|ACV49251.1| type III restriction protein res subunit [Halomicrobium mukohataei
DSM 12286]
Length = 630
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/378 (28%), Positives = 169/378 (44%), Gaps = 36/378 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G SG+ V P G+GK++ + + L L + QW
Sbjct: 263 RDYQADWVQRFQEQG---SGVFVGPPGSGKTVATMGVMEAVGGETLILVPSRELASQWRD 319
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ L + + + QI + K V + TY R K+ +E R W
Sbjct: 320 ELLLHTDLDESQIGEYHGGEK----AIRPVTIATYRTAGMDRHR-----KLFDE---RRW 367
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEV +PA + R+ L H +LGLTAT VRED++ ++ L+GP + +W
Sbjct: 368 GLIVYDEVQHIPADVARRSARLQGKH-RLGLTATPVREDDKEEEIFTLVGPPIG-TDWSA 425
Query: 207 LVKGGFIANVQCAEVWCPMTK-EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265
L GF+ + P + E EY+ ++Q NP K L+ H
Sbjct: 426 LFDAGFVQEPEVQIRQIPWSDDEVADEYVSAVGHGRRQTA-ATNPAKIDEIRHLLTEHPH 484
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
K +VF + L A +L P I G T H ER ++ F+ + + +T+ +S+VGD
Sbjct: 485 A---KALVFVEYLDQGEAIAAELDVPFISGETRHAERERLFDEFRRN-ERDTLVISRVGD 540
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P+A + I S GSRRQ AQR GR +R G +A Y L +
Sbjct: 541 EGIDLPDAELAIVASGLGGSRRQGAQRAGRTMRPVG-------------DAQLYLLATRG 587
Query: 386 TQEMFYSTKRQQFLIDQG 403
T+E + ++ + L +G
Sbjct: 588 TEEEDFVRQQMRHLASKG 605
>gi|344211217|ref|YP_004795537.1| DNA repair helicase [Haloarcula hispanica ATCC 33960]
gi|343782572|gb|AEM56549.1| DNA repair helicase [Haloarcula hispanica ATCC 33960]
Length = 620
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/354 (29%), Positives = 160/354 (45%), Gaps = 29/354 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ+ + + G SG+ V P G+GK++ + A I
Sbjct: 248 GDAIEMDLRLRL------RDYQQDWVERFTEQG---SGVFVGPPGSGKTVAAMGAMAAIS 298
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +T+ DD I + K V + TY
Sbjct: 299 GETLILVPSRELATQWHDELVRHTTLTDDDIGEYHGGEK----NIRPVTIATYRTAGMDR 354
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R K+ ++ R+WGL++ DEVH VP+ + R+ L H +LGLTAT RE +
Sbjct: 355 HR-----KLFDQ---RKWGLIVFDEVHHVPSPIHRRSADLQTKH-RLGLTATPTRESDDE 405
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQALYV 247
++ LIGP + +W L G++A + P E SEY ++QA
Sbjct: 406 EEIFTLIGPPIG-TDWGKLFDEGYVAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQAA-A 463
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
N K + + + + I + D A++E + P I G T H R K+
Sbjct: 464 SNTGKIDEIHYALAENPAAKALVFIEYLDQGEAISE---AIDAPFISGETPHARREKLFD 520
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
F+ +LNT+ +S+VGD ID+P+A + I S GSRRQ AQR GR +R G
Sbjct: 521 EFRRG-ELNTLVVSRVGDEGIDLPDAELAIVASGLGGSRRQGAQRAGRTMRPAG 573
>gi|435848672|ref|YP_007310922.1| DNA/RNA helicase, superfamily II [Natronococcus occultus SP4]
gi|433674940|gb|AGB39132.1| DNA/RNA helicase, superfamily II [Natronococcus occultus SP4]
Length = 646
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/382 (27%), Positives = 170/382 (44%), Gaps = 36/382 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + + G G+ V P G+GK++ + A + L L + QWA
Sbjct: 288 REYQHEWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMAHVGGETLVLVPSRDLARQWAE 344
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
++++ QI ++ K V + TY + RS +REW
Sbjct: 345 TIAEYTSLSPHQIGQYHGGQK----NVRPVTIATYQIAGMDRHRSL--------FDDREW 392
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 393 GLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWEA 450
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GF+A + + P E ++K + N K +L+ H
Sbjct: 451 LFDAGFVAEPELEIRYVPWGDEEQQNAYGSAEGREKYRIAAQNRGKIDEIRYLLSAHP-- 508
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGD 325
G K +VF D L E A L P + G T H R + + + RDL + +S+VGD
Sbjct: 509 -GAKSLVFVDYLEQGRELAAALDVPFLSGETPHHERRRLLEEFRRDERDL--LVISRVGD 565
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 566 EGIDLPTADMAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 612
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T+E ++ ++ Q L +G + +
Sbjct: 613 TREEEFARRQLQHLGRKGITVR 634
>gi|448336883|ref|ZP_21525970.1| type III restriction protein res subunit [Natrinema pallidum DSM
3751]
gi|445627221|gb|ELY80546.1| type III restriction protein res subunit [Natrinema pallidum DSM
3751]
Length = 636
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/385 (27%), Positives = 173/385 (44%), Gaps = 36/385 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G G+ V P G+GK++ + A ++ L L + QWA
Sbjct: 281 RDYQRTWVDRFTEAG---EGVFVGPPGSGKTVAAMGAMAHVEGETLVLVPSRDLAQQWAE 337
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+++++ QI ++ KE V + TY + RS +REW
Sbjct: 338 TIVEYTSLEPHQIGQYHGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREW 385
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 386 GLVIFDECQHVPSDVYRRSTHLQSKH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWEA 443
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G +A + + P + + + ++K + N K +L+ H
Sbjct: 444 LFDAGHVAEPELEIRYVPWGDDEQANAYGSADGREKYRIAARNRGKIDEVRYLLSAHPDA 503
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGD 325
K IVF D L E + L P + G T H R + + + RDL + +S+VGD
Sbjct: 504 ---KAIVFVDYLEQGGELSEALDVPFLSGETPHHERRRLLEEFRRNERDL--LLISRVGD 558
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 559 EGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 605
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVIT 410
T+E ++ K+ Q L +G + + T
Sbjct: 606 TREEDFARKQLQHLGRKGMTVRERT 630
>gi|448314677|ref|ZP_21504360.1| type III restriction protein res subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445594410|gb|ELY48570.1| type III restriction protein res subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 654
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 179/406 (44%), Gaps = 38/406 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R DL ++L+ R YQ + + G G+ V P G+GK++ + A
Sbjct: 256 DHRELEAGEDLQIDLE--VSLRAYQRTWVDRFADAG---EGVFVGPPGSGKTVAAMGAMA 310
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA + +++++ QI ++ K V + TY +
Sbjct: 311 HVGGETLVLVPSRDLARQWAQTIEEYTSLEAHQIGQYHGGQKH----VRPVTIATYQIAG 366
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 367 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 417
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
R T++ L+GP + +W L GF+A + + P E + +++ +
Sbjct: 418 NRQTEIFTLVGPPIG-TDWEALFDAGFVAEPELEIRYVPWGDEEQRNAYASADGQERYRI 476
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGAT-SHVERTK 304
N K +L+ H K +VF D L + A L P + G T H R
Sbjct: 477 AAKNRGKVDEVRYLLSAHPDS---KALVFVDYLEQGEDLAAALDVPFLSGETRHHERRRL 533
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 534 LEEFRRDERDL--LIVSRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 588
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ K+ Q L +G + + T
Sbjct: 589 ----------GALVYVLATRGTREEDFARKQLQHLGRKGMTIREQT 624
>gi|448359567|ref|ZP_21548217.1| type III restriction protein res subunit [Natrialba chahannaoensis
JCM 10990]
gi|445642202|gb|ELY95271.1| type III restriction protein res subunit [Natrialba chahannaoensis
JCM 10990]
Length = 677
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 110/406 (27%), Positives = 182/406 (44%), Gaps = 38/406 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R L++EL R YQ+ + + G G+ V P G+GK++ + A
Sbjct: 270 DHRELEAGEQLDIELG--VSLRDYQQTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 324
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA + +++++ QI ++ K V + TY +
Sbjct: 325 HVGGETLVLVPSRDLARQWAEAIEEYTSLEPHQIGQYHGGQKN----VRPVTIATYQIAG 380
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 381 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 431
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L + GF+A + + P + S + ++K +
Sbjct: 432 DRQTEIFTLVGPPIG-TDWQALFEAGFVAEPELEIRYVPWGDDEQSNAYASADGREKYRI 490
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H K +VF D L + A L P + G T H R
Sbjct: 491 AARNRGKVDDVRYLLSAHADS---KALVFVDYLDQGRDLADALDVPFLSGETPHHERRRL 547
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 548 LEEFRRDERDL--LIVSRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 602
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ ++ Q L +G + + T
Sbjct: 603 ----------GALVYVLATRGTREEDFARRQLQHLGRKGMTVREET 638
>gi|397774973|ref|YP_006542519.1| DNA/RNA helicase, superfamily ii [Natrinema sp. J7-2]
gi|397684066|gb|AFO58443.1| DNA/RNA helicase, superfamily ii [Natrinema sp. J7-2]
Length = 635
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 169/360 (46%), Gaps = 31/360 (8%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
RSG+ V P G+GK++ + I L + N V QW + +T+ QI ++
Sbjct: 296 RSGVFVGPSGSGKTIAALGVMEEIAGETLIIVPNRELVHQWEKEITEKTTLSAHQIGKYH 355
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+K+ R V + TY+ A R K+ E R+WGL++ DE H A ++
Sbjct: 356 GGTKQ-IRP---VTIATYDTAAMSRHR-----KLFNE---RDWGLVIADECHHAVASTWK 403
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ + +S +LGL+AT VRE + ++ LIGP + +W L G++ V
Sbjct: 404 RFREI-QSKARLGLSATPVREADDPKEIYTLIGPPIG-TDWGSLFAEGWVEKPDVEIVSV 461
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
P + E ++ + K+ NP K + L++ H Q K ++F D + E
Sbjct: 462 PWASDTARERYQRASGSKRLIEAARNPKKSSVIKSLLKEHRSQ---KTLIFVDWIKQGKE 518
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA 343
+L P +YG T H ER +I F+ +++T+ +S++GD ID+P+A V I S+
Sbjct: 519 LKDELNLPFVYGDTGHKEREQIYDRFREG-EIDTLIISRIGDEGIDLPDAEVAILASTMG 577
Query: 344 GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
SR Q QR GR +R G +A Y +++ + E + + Q+L ++G
Sbjct: 578 SSRSQTGQRAGRTMRPLG-------------DAKVYIVLTRGSGEEDWGRESTQYLAEKG 624
>gi|448309246|ref|ZP_21499107.1| type III restriction protein res subunit [Natronorubrum bangense
JCM 10635]
gi|445590551|gb|ELY44764.1| type III restriction protein res subunit [Natronorubrum bangense
JCM 10635]
Length = 659
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 112/406 (27%), Positives = 182/406 (44%), Gaps = 38/406 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ L++EL + R YQ+ +++ G G+ V P G+GK++ + A
Sbjct: 278 DHRDLEAGEALSIELD--VRLRDYQQTWVNRFAEAG---EGVFVGPPGSGKTVAAMGAMA 332
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QWA +++ QI ++ KE V + TY +
Sbjct: 333 HVGGETLVLVPSRDLARQWAESIAEHTSLDPHQIGQYHGGRKE----VRPVTIATYQIAG 388
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 389 MDRHRSL--------FDDREWGLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 439
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L + GF+A + + P + + ++K +
Sbjct: 440 DRQTEIFTLVGPPIG-TDWEALFEAGFVAEPELEIRYVPWGDDEQRNAYVSADGREKYRI 498
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H K IVF D L + A L P + G T H R
Sbjct: 499 AAKNRGKIDDVRYLLSAHPDS---KAIVFVDYLEQGRDLAAALDVPFLSGETPHHERRRL 555
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 556 LEEFRRNERDL--LVISRVGDEGIDLPTADLAIIASGLGGSRRQGTQRAGRTMRPAG--- 610
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ K+ Q L +G + + T
Sbjct: 611 ----------GALVYVLATYGTREEDFARKQLQHLGRKGMTIREQT 646
>gi|433590592|ref|YP_007280088.1| DNA/RNA helicase, superfamily II [Natrinema pellirubrum DSM 15624]
gi|448332004|ref|ZP_21521253.1| type III restriction protein res subunit [Natrinema pellirubrum DSM
15624]
gi|433305372|gb|AGB31184.1| DNA/RNA helicase, superfamily II [Natrinema pellirubrum DSM 15624]
gi|445628142|gb|ELY81452.1| type III restriction protein res subunit [Natrinema pellirubrum DSM
15624]
Length = 640
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 179/403 (44%), Gaps = 38/403 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ +L +EL R YQ + + G G+ V P G+GK++ + A
Sbjct: 262 DHRDLEAGEELAIELT--VSLRDYQRTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 316
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
++ L L + QWA +++++ QI ++ K V + TY +
Sbjct: 317 HVEGETLVLVPSRDLAQQWADTIVEYTSLEPHQIGQYHGGQK----NVRPVTIATYQIAG 372
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 373 MDRHRSL--------FDDREWGLVIFDECQHVPSDVYRRSTHLQSKH-RLGLSASPIRED 423
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L GF+A + + P + ++K +
Sbjct: 424 DRQTEIFTLVGPPIG-TDWEALFDAGFVAEPELEIRYVPWGDDEQQNAYASAEGQEKYRI 482
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H + K IVF D L E + L P + G T H R
Sbjct: 483 AARNRGKIDEVRYLLSAHPEA---KAIVFVDYLEQGRELSEALDVPFLSGETPHHERRRL 539
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 540 LEEFRRDERDL--LLISRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 594
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + ++E ++ K+ Q L +G + +
Sbjct: 595 ----------GALVYVLATRGSREEDFARKQLQHLGRKGITVR 627
>gi|448384820|ref|ZP_21563555.1| type III restriction protein res subunit [Haloterrigena
thermotolerans DSM 11522]
gi|445657824|gb|ELZ10648.1| type III restriction protein res subunit [Haloterrigena
thermotolerans DSM 11522]
Length = 655
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 109/403 (27%), Positives = 179/403 (44%), Gaps = 38/403 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ +L +EL R YQ + + G G+ V P G+GK++ + A
Sbjct: 268 DHRDLESGEELAIELT--VSLRDYQRTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 322
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
++ L L + QWA +++++ QI ++ K V + TY +
Sbjct: 323 HVEGETLVLVPSRDLAQQWADTIVEYTSLEPHQIGQYHGGQK----NVRPVTIATYQIAG 378
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 379 MDRHRSL--------FDDREWGLVIFDECQHVPSDVYRRSTHLQSKH-RLGLSASPIRED 429
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L GF+A + + P + ++K +
Sbjct: 430 DRQTEIFTLVGPPIG-TDWEALFDAGFVAEPELEIRYVPWGDDEQQNAYASAEGQEKYRI 488
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ H + K IVF D L E + L P + G T H R
Sbjct: 489 AARNRGKIDEVRYLLSAHPEA---KAIVFVDYLEQGRELSAALDVPFLSGETPHHERRRL 545
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 546 LEEFRRDERDL--LLISRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 600
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
A Y L + ++E ++ K+ Q L +G + +
Sbjct: 601 ----------GALVYVLATRGSREEDFARKQLQHLGRKGITVR 633
>gi|429193446|ref|YP_007179124.1| DNA/RNA helicase [Natronobacterium gregoryi SP2]
gi|448324008|ref|ZP_21513450.1| type III restriction protein res subunit [Natronobacterium gregoryi
SP2]
gi|429137664|gb|AFZ74675.1| DNA/RNA helicase, superfamily II [Natronobacterium gregoryi SP2]
gi|445619906|gb|ELY73420.1| type III restriction protein res subunit [Natronobacterium gregoryi
SP2]
Length = 620
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/385 (27%), Positives = 172/385 (44%), Gaps = 36/385 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G G+ V P G+GK++ + A + L L + QWA
Sbjct: 257 RDYQQTWVDRFAEAG---EGVFVGPPGSGKTVAAMGAMAEVGGETLVLVPSRDLARQWAE 313
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ ++ + QI ++ K V + TY + RS +REW
Sbjct: 314 TIEEYTNLGPHQIGQYHGGQKH----VRPVTIATYQIAGMDRHRSL--------FDDREW 361
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 362 GLVIFDECQHVPSDVYRRSTHLQSQH-RLGLSASPIREDDRQTEIFTLVGPPI-GTDWQA 419
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GF+A + + P + + +++ + N K +L+R H
Sbjct: 420 LFDAGFVAEPELEIRYVPWGDDQQRNAYASADGRERYRIAAKNHGKIDEVRYLLRDHHDA 479
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGD 325
K +VF D L E A L P + G T H R + + + RDL + +S+VGD
Sbjct: 480 ---KALVFVDYLEQGRELAEALDGPFLSGETPHHERRRLLEEFRRDERDL--LVVSRVGD 534
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 535 EGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 581
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVIT 410
T+E ++ ++ Q L +G + + T
Sbjct: 582 TREEEFARRQLQHLGRKGMTVREQT 606
>gi|126465860|ref|YP_001040969.1| DNA repair helicase RAD25 [Staphylothermus marinus F1]
gi|126014683|gb|ABN70061.1| DNA repair helicase RAD25 [Staphylothermus marinus F1]
Length = 548
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 125/408 (30%), Positives = 194/408 (47%), Gaps = 63/408 (15%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
RPYQ ++L N GI+ LP G+GK+L+G++A + L + + QW
Sbjct: 169 RPYQREALEAWIKNNG--KGIVALPTGSGKTLIGIAAIAQTSLRTLIITYTREQMFQWRE 226
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
Q ++T + + S K A + +TTY G R+ I+E+ + +
Sbjct: 227 QIYKYTTAEPGLVGLIYSREKRL----APITITTYQ----SGFRN------IKEL-SPFF 271
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
LL++DEVH +PA FR + + S ++GL+AT VRED R +L L+G +Y + +
Sbjct: 272 DLLIVDEVHHLPADKFRYIAIHSISRYRMGLSATPVREDGRHEELFPLLGGIIYYRSAAE 331
Query: 207 LVKGGFIANVQCAEVWCPMTKE-------------------FFSEYLK---KENSKKKQA 244
L G++A + + + K+ F+E L K + K K A
Sbjct: 332 LANMGYLARYRVLTIKVGLRKDEKKLFEDLRKTYKVLSGGRSFNEVLDSALKGDEKAKNA 391
Query: 245 LYVMNPNKF----------RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIY 294
L + N + +A E I E +RG KII+F + E A KL ++
Sbjct: 392 LRIHNQMRMILAKSKSKIDKAVE--IAEKEYRRGSKIIIFTQYIEQAKEIAEKLNAYLLT 449
Query: 295 GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLG 354
G +R ++L+ FK +RD + ++ VGD +DIP+ANV I I S GSRRQ QRLG
Sbjct: 450 GEVPVEKRKRVLEEFK-NRDNGILVVTTVGDEGLDIPDANVGI-IVSGTGSRRQFIQRLG 507
Query: 355 RILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
RILR K G E A Y +V T E +++ KR++ +D+
Sbjct: 508 RILRPK-------PNGVE---ARLYEIVLEKTPEEYHARKRKRVDLDE 545
>gi|448340839|ref|ZP_21529808.1| type III restriction protein res subunit [Natrinema gari JCM 14663]
gi|445629445|gb|ELY82728.1| type III restriction protein res subunit [Natrinema gari JCM 14663]
Length = 636
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 168/369 (45%), Gaps = 33/369 (8%)
Query: 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102
A G+ V P G+GK++ + A ++ L L + QWA +++++ QI ++
Sbjct: 294 AGEGVFVGPPGSGKTVAAMGAMANVEGETLVLVPSRDLAQQWADTIVEYTSLEPHQIGQY 353
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162
KE V + TY + RS +REWGL++ DE VP+ ++
Sbjct: 354 HGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREWGLVIFDECQHVPSDVY 401
Query: 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222
R+ L H +LGL+A+ +RED+R T++ L+GP + +W L G +A + +
Sbjct: 402 RRSTHLQSKH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGHVAEPELEIRY 459
Query: 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
P + + + +++ + N K +L+ H K IVF D L
Sbjct: 460 VPWGDDEQANAYGSADGREQYRIAARNRGKVDEVRYLLSAHPDA---KAIVFVDYLAQGR 516
Query: 283 EYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341
E + L P + G T H R + + + RDL + +S+VGD ID+P A++ I S
Sbjct: 517 ELSEALDVPFLSGETPHHERRRLLEEFRRDERDL--LLISRVGDEGIDLPTADLAIVASG 574
Query: 342 HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
GSRRQ QR GR +R G A Y L + T+E ++ K+ Q L
Sbjct: 575 LGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRGTREEDFARKQLQHLGR 621
Query: 402 QGYSFKVIT 410
+G + + T
Sbjct: 622 KGMTVRERT 630
>gi|397773187|ref|YP_006540733.1| type III restriction protein res subunit [Natrinema sp. J7-2]
gi|397682280|gb|AFO56657.1| type III restriction protein res subunit [Natrinema sp. J7-2]
Length = 636
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 102/369 (27%), Positives = 168/369 (45%), Gaps = 33/369 (8%)
Query: 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102
A G+ V P G+GK++ + A ++ L L + QWA +++++ QI ++
Sbjct: 294 AGEGVFVGPPGSGKTVAAMGAMANVEGETLVLVPSRDLAQQWADTIVEYTSLEPHQIGQY 353
Query: 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162
KE V + TY + RS +REWGL++ DE VP+ ++
Sbjct: 354 HGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREWGLVIFDECQHVPSDVY 401
Query: 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222
R+ L H +LGL+A+ +RED+R T++ L+GP + +W L G +A + +
Sbjct: 402 RRSTHLQSKH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWEALFDAGHVAEPELEIRY 459
Query: 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALT 282
P + + + +++ + N K +L+ H K IVF D L
Sbjct: 460 VPWGDDEQANAYGSADGREQYRIAARNRGKVDEVRYLLSAHPDA---KAIVFVDYLAQGR 516
Query: 283 EYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341
E + L P + G T H R + + + RDL + +S+VGD ID+P A++ I S
Sbjct: 517 ELSEALDVPFLSGETPHHERRRLLEEFRRDERDL--LLISRVGDEGIDLPTADLAIVASG 574
Query: 342 HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
GSRRQ QR GR +R G A Y L + T+E ++ K+ Q L
Sbjct: 575 LGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRGTREEDFARKQLQHLGR 621
Query: 402 QGYSFKVIT 410
+G + + T
Sbjct: 622 KGMTVRERT 630
>gi|448346033|ref|ZP_21534922.1| type III restriction protein res subunit [Natrinema altunense JCM
12890]
gi|445633966|gb|ELY87153.1| type III restriction protein res subunit [Natrinema altunense JCM
12890]
Length = 636
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/382 (27%), Positives = 171/382 (44%), Gaps = 36/382 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G G+ V P G+GK++ A ++ L L + QWA
Sbjct: 281 RDYQRTWVDRFTEAG---EGVFVGPPGSGKTVAATGAMAHVEGETLVLVPSRDLAQQWAD 337
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+++++ QI ++ KE V + TY + RS +REW
Sbjct: 338 TIVEYTSLEPHQIGQYHGGRKE----VRPVTIATYQIAGMDRHRSL--------FDDREW 385
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 386 GLVIFDECQHVPSDVYRRSTHLQSKH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWEA 443
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L G +A + + P + + + ++K + N K +L+ H
Sbjct: 444 LFDAGHVAEPELEIRYVPWGDDEQANAYGSADGREKYRIAARNRGKIDEVRYLLSAHPDA 503
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATS-HVERTKILQAFKCSRDLNTIFLSKVGD 325
K IVF D L + + L P + G T H R + + + RDL + +S+VGD
Sbjct: 504 ---KAIVFVDYLEQGRDLSEALDVPFLSGETPYHERRRLLEEFRRDERDL--LLISRVGD 558
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 559 EGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 605
Query: 386 TQEMFYSTKRQQFLIDQGYSFK 407
T+E ++ K+ Q L +G + +
Sbjct: 606 TREEDFARKQLQHLGRKGMTVR 627
>gi|448498866|ref|ZP_21611057.1| type III restriction protein res subunit [Halorubrum coriense DSM
10284]
gi|445698039|gb|ELZ50092.1| type III restriction protein res subunit [Halorubrum coriense DSM
10284]
Length = 635
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 110/412 (26%), Positives = 175/412 (42%), Gaps = 52/412 (12%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V DL +L R YQE + +SG+ V P G+GK++ G++ +
Sbjct: 257 GDPVEIDLTTDL------RDYQETWVETFLDR---KSGVYVGPPGSGKTVAGIATIAAVG 307
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + DQW + S + I + +KE R V + TY +
Sbjct: 308 GETLILVPSRELADQWREELLEHSAVDPADIGLYHGGTKE-IRP---VTIATYQIAGMDR 363
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
RS +REWGL+ DE H V A ++ + L H +LGL+AT V E
Sbjct: 364 HRSL--------FDSREWGLICFDECHHVTAPVYSRTAELQSKH-RLGLSATPVSETGSE 414
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W L + GF+ + + P +E + ++++ L
Sbjct: 415 EEIYTLIGQPI-GADWDSLFEAGFVQEPEVEIRYVPWREEMARNEYAAADGRERRRLAAE 473
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P I G T H ER ++ +
Sbjct: 474 NPAKVEEIRYLLAAH---RDKKALVFVEYLDQGAAIADALGVPFISGETPHHERAELFRR 530
Query: 309 FKCSR-------------DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
F+ DL+ + +S+VGD ID+P A + + S GSRRQ +QR GR
Sbjct: 531 FRADEEAGSSDGGSATDDDLDVLVVSRVGDEGIDLPNAELAVVASGLGGSRRQGSQRAGR 590
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
+R G +A Y L + + E ++ ++ + L +G +
Sbjct: 591 TMRPTG-------------SALVYVLATRGSSEEEFAQRQMRHLGRKGVRVR 629
>gi|300710310|ref|YP_003736124.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
gi|448294636|ref|ZP_21484715.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
gi|299123993|gb|ADJ14332.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
gi|445586313|gb|ELY40595.1| type III restriction protein res subunit [Halalkalicoccus jeotgali
B3]
Length = 599
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 170/358 (47%), Gaps = 27/358 (7%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R+ + L +EL + R YQ + + + + ++G++V P G+GK++ G+ A
Sbjct: 227 DARDLDTGDPLEIELS--LELREYQREWVERFT---KQKAGVLVGPPGSGKTVAGMGAMA 281
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
+ L L + QW +++ +I + KE V + TY
Sbjct: 282 AVGGETLVLVPSRELAAQWRESLLESTSLSAAEIGEYHGGKKE----IRPVTIATYQTAG 337
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
E ++ +E R WGL++ DE H +P+ +FR+ L H +LGL+AT VRE
Sbjct: 338 M-----ERHRRLFDE---RRWGLIIYDEAHHIPSPVFRRSADLQSKH-RLGLSATPVRES 388
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQA 244
+ ++ LIGP + +W L + G++ + P E SEY +++Q
Sbjct: 389 DDEVEIFTLIGPPIG-TDWSALFEAGYVMEPDVEIRYVPWRNEAAESEYASAVGHERRQ- 446
Query: 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTK 304
+ NP K L+ H G+K ++F D + YA L P + G T + +R +
Sbjct: 447 VAASNPAKLDEIRRLLEAHA---GEKTLIFVDWIDQGEAYAEDLEIPFLSGQTRYAKRER 503
Query: 305 ILQAFK-CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
+L F+ +R++ + +S+VGD ID+P A V I S GSRRQ +QR GR +R G
Sbjct: 504 LLSEFRHGTREV--LLVSRVGDEGIDLPAATVAIVASGLGGSRRQGSQRAGRTMRPVG 559
>gi|448355614|ref|ZP_21544364.1| type III restriction protein res subunit [Natrialba hulunbeirensis
JCM 10989]
gi|445634735|gb|ELY87910.1| type III restriction protein res subunit [Natrialba hulunbeirensis
JCM 10989]
Length = 677
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 104/385 (27%), Positives = 174/385 (45%), Gaps = 36/385 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+ + + G G+ V P G+GK++ + A + L L + QWA
Sbjct: 289 RDYQQTWVDRFAEGG---EGVFVGPPGSGKTVAAMGAMAHVGGETLVLVPSRDLARQWAE 345
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ ++++ QI ++ K V + TY + RS +REW
Sbjct: 346 AIEEYTSLGPHQIGQYHGGQKN----VRPVTIATYQIAGMDRHRSL--------FDDREW 393
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 394 GLVVFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWQA 451
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L + GF+A + + P + S + +++ + N K +L+ H
Sbjct: 452 LFEAGFVAEPELEIRYVPWGDDEQSNAYASADGRERYRIAARNRGKVDEVRYLLSAHADS 511
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGD 325
K +VF D L + A L P + G T H R + + + RDL + +S+VGD
Sbjct: 512 ---KALVFVDYLDQGRDLADALDVPFLSGETPHHERRRLLEEFRRDERDL--LIVSRVGD 566
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 567 EGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 613
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVIT 410
T+E ++ ++ Q L +G + + T
Sbjct: 614 TREEDFARRQLQHLGRKGMTVREET 638
>gi|21229102|ref|NP_635024.1| DNA repair helicase [Methanosarcina mazei Go1]
gi|20907658|gb|AAM32696.1| DNA repair helicase [Methanosarcina mazei Go1]
Length = 474
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 122/406 (30%), Positives = 184/406 (45%), Gaps = 69/406 (16%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++L +G R G++VLP G+GK+L G+ A L + ++QW
Sbjct: 79 RDYQAEALIS-WGENEKR-GVLVLPTGSGKTLTGIRAIAGCNTPALVVVPTLDLLEQWKK 136
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ + +++ I + K+ F V V+TY+ S I E +
Sbjct: 137 ELEEAFSME---IGKLGGGDKKIF----PVTVSTYD-----------SAYIHAETLGNRF 178
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DEVH +PA +R + + S C+LGLTAT RED T+LN L+G K+YE +
Sbjct: 179 GLIIFDEVHHLPATGYRSIAEFSASPCRLGLTATYEREDGLHTELNRLVGGKVYEKKVSE 238
Query: 207 LVKGGFIANVQCAEVWCPMTKE----------FFSEYLKK-------------------E 237
L GG +A V +T E F +YL+K
Sbjct: 239 LA-GGHLAPYTIKRVSVALTDEEQKEYEKKYSVFLDYLRKTGMIMRSPQDFQKLVMKSGR 297
Query: 238 NSKKKQALYVMNP------NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP 291
+ + ++AL N N E L EQ R D+I +F ++ + + P
Sbjct: 298 DPEARKALLARNAARDLAFNSDSKIEKLREILEQHRDDRIFIFTEHNRLVHRISNSFFIP 357
Query: 292 MIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351
I T ER+ IL+ F+ R + SKV D ID+PEAN+ I I+S GS+R Q
Sbjct: 358 AITYRTPSKERSSILEKFREGR-YRAVVTSKVLDEGIDVPEANIGI-IASGTGSKRAYVQ 415
Query: 352 RLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397
RLGRILR K GKE A Y +++ +T E + +R++
Sbjct: 416 RLGRILRQK--------EGKE---AVLYEIIAEETTETGTAKRRKE 450
>gi|390939036|ref|YP_006402774.1| type III restriction protein res subunit [Desulfurococcus
fermentans DSM 16532]
gi|390192143|gb|AFL67199.1| type III restriction protein res subunit [Desulfurococcus
fermentans DSM 16532]
Length = 550
Score = 141 bits (356), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 129/420 (30%), Positives = 199/420 (47%), Gaps = 65/420 (15%)
Query: 17 NMELKPHAQP---RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73
++++KP + R YQ ++LSK N G+I LP G+GK+L+GV+A L
Sbjct: 154 SLQVKPELRNIALRDYQREALSKWVENNY--RGVIALPTGSGKTLIGVAAIIEKAVRSLI 211
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEE 133
+ + QW +++I I S+ K+ A + +TTY G R
Sbjct: 212 IVYTKEQMVQWRNAILEYTSIPQSMIGLIYSEEKK----IAPITITTYQ----SGFRQ-- 261
Query: 134 SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNF 193
I +I + + LL++DEVH +PA F+ + + + ++GL+AT RED R +L
Sbjct: 262 ----INDI-SPFFDLLIVDEVHHLPADKFKHIAVHSIAGYRMGLSATPFREDGRHEELFP 316
Query: 194 LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE---FFSEYLKKE----NSKK-KQAL 245
L+G +Y DLV G++A + + ++ E + E +K N K+ KQ L
Sbjct: 317 LLGGVIYYKTPQDLVAMGYLARYRVETIKVKLSSEERRLYDELRRKYYSLVNGKEFKQVL 376
Query: 246 YVMNPNKFRACEFLIRFHEQQR-----------------------GDKIIVFADNLFALT 282
N+ +A E L R H Q R G K+IVF +
Sbjct: 377 EEARTNE-KAREAL-RVHSQMRSILARARAKIEKAVEIARRELENGGKVIVFTQYVDQAR 434
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
E + +L ++ G ER +IL+ FK S + + ++ VGD +DIP+ANV I I S
Sbjct: 435 EISERLNAYLLTGEVPTSERKRILEEFKGS-EKGILVVTTVGDEGLDIPDANVGI-IVSG 492
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ QRLGR+LR K GGKE A Y +V T E F + +R+ ++D+
Sbjct: 493 TGSRRQFIQRLGRLLRPK-------PGGKE---AILYEIVLEKTSEEFQARRRKTTVLDE 542
>gi|448404231|ref|ZP_21572478.1| type III restriction protein res subunit [Haloterrigena limicola
JCM 13563]
gi|445663851|gb|ELZ16592.1| type III restriction protein res subunit [Haloterrigena limicola
JCM 13563]
Length = 470
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 127/430 (29%), Positives = 197/430 (45%), Gaps = 82/430 (19%)
Query: 12 VNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71
V P L++ H +PR YQ+ +L +GR G +VLP G+GK+ +G+ A S
Sbjct: 71 VYPTLDLTPALHIEPRDYQQAALDAWIDHGR--RGSVVLPTGSGKTFLGLQAIADTGVSA 128
Query: 72 LCLATNAVSVDQW------AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
L + ++QW AF +L D I S E + VTTY+
Sbjct: 129 LVVTPTIDLMNQWHATLTNAFGDQL-----TDPIGVLGGGSHE----VTAITVTTYD--- 176
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
+ + I E + ++GLL++DE H +PA +R++ +T + +LGLTAT R D
Sbjct: 177 -------SAYRYINEYGD-QFGLLVVDEEHHLPAPTYRQIPEMTIAPYRLGLTATYERPD 228
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT------------------- 226
+ L LIGP +YE +D + G +++ + + +T
Sbjct: 229 GKHELLEDLIGPVVYEEA-VDELAGEYLSEYETIHMSVELTAEERETYNEEYQLYRDYVD 287
Query: 227 --------KEFFSEYLKKE--NSKKKQALYVMN---------PNKFRACEFLIRFHEQQR 267
+E + E+LK+ + K ++AL K + L++ H R
Sbjct: 288 SHEFDLWKEEGYQEFLKRTSYDPKGRRALIAKQRAERIARTAEKKLETLDNLLKRHHDDR 347
Query: 268 GDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327
II ADN FA E + + P I T ERT+IL+ F+ + + + S+V D
Sbjct: 348 A--IIFTADNGFAY-EISQEFIVPCITHQTKTDERTEILERFRTG-EYSMLATSQVLDEG 403
Query: 328 IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387
ID+P ANV I +S A S+RQ AQRLGRILR +DR A Y +++ DT
Sbjct: 404 IDVPAANVGIILSGSA-SKRQYAQRLGRILRPT---DDRQP-------ARLYEIITADTM 452
Query: 388 EMFYSTKRQQ 397
E + S +R+Q
Sbjct: 453 ETYVSQQRRQ 462
>gi|448318047|ref|ZP_21507585.1| type III restriction protein res subunit [Natronococcus jeotgali
DSM 18795]
gi|445600805|gb|ELY54807.1| type III restriction protein res subunit [Natronococcus jeotgali
DSM 18795]
Length = 658
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/385 (28%), Positives = 173/385 (44%), Gaps = 36/385 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + + G G+ V P G+GK++ A + L L + QWA
Sbjct: 301 REYQREWVDRFAEAG---EGVFVGPPGSGKTVAATGAMAHVGGETLVLVPSRDLARQWAE 357
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+++++ QI ++ K V + TY + RS +REW
Sbjct: 358 TIAEYTSLEPHQIGQYHGGQK----NVRPVTIATYQIAGMDRHRSL--------FDDREW 405
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R ++ L+GP + +W
Sbjct: 406 GLVVFDECQHVPSDIYRRSTHLQSRH-RLGLSASPIREDDRQKEIFTLVGPPIG-TDWEA 463
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GF+A + + P E ++K + N K +L+ H
Sbjct: 464 LFDAGFVAEPELEIRYVPWGDEEQGNAYGSAEGREKYRIAAQNRGKIDEVRYLLSAHP-- 521
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGD 325
G K +VF D L A L P + G T H ER ++L+ F+ RDL + +S+VGD
Sbjct: 522 -GAKSLVFVDYLAQGRAIADALDVPFLSGETPHRERRRLLEEFRRDERDL--LVISRVGD 578
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 579 EGIDLPTADMAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 625
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVIT 410
T+E ++ ++ Q L +G + + T
Sbjct: 626 TREEEFARRQLQHLGRKGITVREQT 650
>gi|218884540|ref|YP_002428922.1| Putative DNA repair helicase [Desulfurococcus kamchatkensis 1221n]
gi|218766156|gb|ACL11555.1| Putative DNA repair helicase [Desulfurococcus kamchatkensis 1221n]
Length = 553
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 131/425 (30%), Positives = 199/425 (46%), Gaps = 65/425 (15%)
Query: 17 NMELKPHAQP---RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73
++++KP + R YQ ++LSK N GII LP G+GK+L+GV+A L
Sbjct: 157 SLQVKPELRNIALRDYQREALSKWVENNY--RGIIALPTGSGKTLIGVAAIIEKAVRSLI 214
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEE 133
+ + QW +++I I S+ K+ A + +TTY G R
Sbjct: 215 IVYTKEQMVQWRKAILEYTSIPQSMIGLIYSEEKK----IAPITITTYQ----SGFRQ-- 264
Query: 134 SEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNF 193
I EI + + LL++DEVH +PA F+ + + + ++GL+AT RED R +L
Sbjct: 265 ----INEI-SPFFDLLIVDEVHHLPADKFKHIAVHSIAGYRMGLSATPFREDGRHEELFP 319
Query: 194 LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE---FFSEYLKKE----NSKK-KQAL 245
L+G +Y DLV G++A + + ++ E + E +K N K+ KQ L
Sbjct: 320 LLGGVIYYKTPQDLVAMGYLARYRVETIKVKLSSEERRLYDELRRKYYSLVNGKEFKQVL 379
Query: 246 YVMNPNKFRACEFLIRFHEQQR-----------------------GDKIIVFADNLFALT 282
N+ +A E L R H Q R G K+I+F +
Sbjct: 380 EEARTNE-KAREAL-RVHSQMRSILARARAKIEKAVEIARRELENGSKVIIFTQYVDQAR 437
Query: 283 EYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH 342
E + +L ++ G ER IL+ FK S + + ++ VGD +DIP+ANV I I S
Sbjct: 438 EISERLNAYLLTGEVPTSERKHILEEFKGS-EKGILVVTTVGDEGLDIPDANVGI-IVSG 495
Query: 343 AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
GSRRQ QRLGR+LR K GGKE A Y +V T E F + +R+ +D+
Sbjct: 496 TGSRRQFIQRLGRLLRPK-------PGGKE---AILYEIVLEKTSEEFQARRRKTTGLDE 545
Query: 403 GYSFK 407
+ K
Sbjct: 546 LFDAK 550
>gi|297527466|ref|YP_003669490.1| type III restriction protein res subunit [Staphylothermus
hellenicus DSM 12710]
gi|297256382|gb|ADI32591.1| type III restriction protein res subunit [Staphylothermus
hellenicus DSM 12710]
Length = 548
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 125/407 (30%), Positives = 191/407 (46%), Gaps = 61/407 (14%)
Query: 27 RPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85
RPYQ ++L NGR GII LP G+GK+L+G++A L + + QW
Sbjct: 169 RPYQREALEAWVKNNGR---GIIALPTGSGKTLIGIAAIAHTSLRTLIITYTREQMFQWR 225
Query: 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE 145
Q ++T + + S K A + +TTY G R+ I+EI +
Sbjct: 226 EQIYKYTTAEPGLVGLIYSREKRL----APITITTYQ----SGFRN------IKEI-SPF 270
Query: 146 WGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWL 205
+ LL++DEVH +PA FR + + S ++GL+AT VRED R +L L+G +Y +
Sbjct: 271 FNLLIVDEVHHLPADKFRYIAIHSISRYRMGLSATPVREDGRHEELFPLLGGIIYHRSAA 330
Query: 206 DLVKGGFIANVQCAEVWCPM---TKEFFSEYLK-------------------KENSKKKQ 243
+L G++A + V + K+ F + K K + + K
Sbjct: 331 ELANMGYLARYRVLTVRVGLGRDEKKLFEDLRKTYKVLSGGRSFKEVLDSALKGDERAKN 390
Query: 244 ALYVMNPNKFRACE--------FLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYG 295
AL + N + + I E +RG KII+F + E A KL ++ G
Sbjct: 391 ALRIHNQMRMILAKSKSKIDKAVKIAEKEYRRGSKIIIFTQYIEQANEIAEKLNAYLLTG 450
Query: 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355
+R ++L FK ++D + ++ VGD +DIP+ANV I I S GSRRQ QRLGR
Sbjct: 451 EVPVEKRKRVLVEFK-NKDNGILVVTTVGDEGLDIPDANVGI-IVSGTGSRRQFIQRLGR 508
Query: 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402
ILR K GG+ A Y +V T E + + KR++ +D+
Sbjct: 509 ILRPKPD------GGE----ARLYEIVLEKTPEEYQARKRKRIDLDE 545
>gi|448678599|ref|ZP_21689606.1| DNA repair helicase [Haloarcula argentinensis DSM 12282]
gi|445772586|gb|EMA23631.1| DNA repair helicase [Haloarcula argentinensis DSM 12282]
Length = 621
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 160/354 (45%), Gaps = 29/354 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ+ + + G SG+ V P G+GK++ + A I
Sbjct: 249 GDAIEMDLRLRL------RDYQQDWVERFTEQG---SGVFVGPPGSGKTVAAMGAMAAIS 299
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ DD I + K V + TY
Sbjct: 300 GETLILVPSRELATQWHDELVRHTSLTDDDIGEYHGGEK----SIRPVTIATYRTAGMDR 355
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R K+ ++ R+WGL++ DEVH VP+ + R+ L H +LGLTAT RE +
Sbjct: 356 HR-----KLFDQ---RKWGLIVFDEVHHVPSPIHRRSADLQTKH-RLGLTATPTRESDDE 406
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQALYV 247
++ LIGP + +W L G++A + P E SEY ++Q +
Sbjct: 407 EEIFTLIGPPIG-TDWGKLFDEGYVAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQ-VAA 464
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
N K + + + + I + D A++E + P I G T H R K+
Sbjct: 465 SNTGKIDEIRYALAENPAAKALVFIEYLDQGEAISE---AIDAPFISGETPHARREKLFD 521
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
F+ +LNT+ +S+VGD ID+P+A + + S GSRRQ AQR GR +R G
Sbjct: 522 EFRRG-ELNTLVVSRVGDEGIDLPDAELALVASGLGGSRRQGAQRAGRTMRPAG 574
>gi|448352223|ref|ZP_21541014.1| type III restriction protein res subunit [Natrialba taiwanensis DSM
12281]
gi|445631603|gb|ELY84832.1| type III restriction protein res subunit [Natrialba taiwanensis DSM
12281]
Length = 681
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 107/406 (26%), Positives = 182/406 (44%), Gaps = 38/406 (9%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
D R + L++EL+ R YQ+ + + G G+ V P G+GK++ + A
Sbjct: 302 DHRELDSGEHLSVELE--VSLRDYQQTWIDRFAEAG---EGVFVGPPGSGKTVAAMGAMA 356
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125
++ L L + QWA + ++++ QI ++ K V + TY +
Sbjct: 357 HVEGETLVLVPSRDLARQWAETIEEFTSLGPHQIGQYHGGQK----NVRPVTIATYQIAG 412
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
RS +REWGL++ DE VP+ ++R+ L H +LGL+A+ +RED
Sbjct: 413 MDRHRSL--------FDDREWGLVIFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIRED 463
Query: 186 ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245
+R T++ L+GP + +W L GF+A + + P + + +++ +
Sbjct: 464 DRQTEIFTLVGPPIG-TDWQALFDDGFVAEPELEIRYVPWGDDEQQNAYASADGRERYRI 522
Query: 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTK 304
N K +L+ + K ++F D L E A L P + G T H R
Sbjct: 523 AAQNRGKIDEIRYLL---AAEPNSKALIFVDYLDQGGELATALDVPFLSGETPHHERRRL 579
Query: 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364
+ + + RDL + +S+VGD ID+P A++ I S GSRRQ QR GR +R G
Sbjct: 580 LEEFRRDERDL--LIVSRVGDEGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG--- 634
Query: 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410
A Y L + T+E ++ ++ Q L +G + + T
Sbjct: 635 ----------GALVYVLATRGTREEDFARRQLQHLGRKGMTVREET 670
>gi|15921551|ref|NP_377220.1| hypothetical protein ST1287 [Sulfolobus tokodaii str. 7]
gi|15622337|dbj|BAB66329.1| ssDNA-dependent ATPase XPBI [Sulfolobus tokodaii str. 7]
Length = 543
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 115/414 (27%), Positives = 202/414 (48%), Gaps = 69/414 (16%)
Query: 15 DLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74
+LN+ K + R YQ++++ G SG+I LP GAGK+++G+ ++KS L +
Sbjct: 150 ELNINFK--GELRDYQKEAVDTWLQRG---SGVIALPTGAGKTVIGIKIITEVRKSTLIV 204
Query: 75 ATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES 134
+ QW ++ I + S+ K + +TTY+ +
Sbjct: 205 TFTKDQMLQWRDAILKFTDANRSDIGLYYSEEK----NIRPITITTYHT----------A 250
Query: 135 EKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194
+ I+E+ + + LL++DE H +PA F+++ + +LGL+AT VRED + +L L
Sbjct: 251 YRHIDELSGK-FELLIIDEAHHLPADRFKEIALKCIASKRLGLSATPVREDGKHEELFKL 309
Query: 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE-------FFSEY-------------- 233
+G +Y +L++ G++A + ++ +T + S++
Sbjct: 310 MGGLIYFKTPQELIQKGYLAPFELIQIRVNLTSKEKLKYATLLSQFRKVAGGKKVSELIQ 369
Query: 234 -LKKENSKKKQALYVMN---------PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
+K+ NS +A+ + N NK +A + +I +++ G+KI++F + E
Sbjct: 370 LVKEGNSNAIEAMKIYNEMKKIVNLAENKLKALDDII---QKENGNKILIFTQYVDQAEE 426
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA 343
A K +I G T+ ER KIL+ FK + + L+ VGD +DIP+ANV I I +
Sbjct: 427 IAKKYNAYLITGKTNKNEREKILRIFKTLKS-GILVLTTVGDEGLDIPDANVGI-IVTGT 484
Query: 344 GSRRQEAQRLGRILR-AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQ 396
GSRRQ QRLGR+LR + GK+ A Y +V+ T E + ++KR+
Sbjct: 485 GSRRQFIQRLGRLLRPSNGKV------------ARLYEIVTRGTAEEYQASKRK 526
>gi|448474264|ref|ZP_21602123.1| type III restriction protein res subunit [Halorubrum aidingense JCM
13560]
gi|445817571|gb|EMA67440.1| type III restriction protein res subunit [Halorubrum aidingense JCM
13560]
Length = 685
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 178/418 (42%), Gaps = 58/418 (13%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V+ DL +L RPYQE + RSG+ V P G+GK++ ++ +
Sbjct: 301 GDPVDVDLTTDL------RPYQETWVETFLER---RSGVYVGPPGSGKTVAAIATIAAVG 351
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + +QW + ST+ I + KE + + TY +
Sbjct: 352 GETLILVPSRELAEQWREELLAHSTVDPADIGLYHGGRKE----IRPITIATYQIAGMDR 407
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
RS +R+WGL+ DE H V A ++ + L H +LGL+AT VRE
Sbjct: 408 HRSL--------FDSRKWGLICFDEAHHVTAPVYSRTAELQSKH-RLGLSATPVRETGSE 458
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W +L + GF+ + + P E + ++++ L
Sbjct: 459 EEIYTLIGQPI-GADWDELFEAGFVQEPEVEIRYVPWRDELARNEYASADGRERRRLAAE 517
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P + G T H ER ++ +
Sbjct: 518 NPAKIEEIRYLLAAH---RDKKALVFIEFLDQGKAIADALGVPFVSGETPHYERAELFRR 574
Query: 309 FK-------CSRD------------LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349
F+ RD ++T+ +S+VGD ID+P A + I S GSRRQ
Sbjct: 575 FRDDGARSSAGRDGDAPDGLGTSDAIDTLVVSRVGDEGIDLPNAELAIVASGLGGSRRQG 634
Query: 350 AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
AQR GR +R G +A Y L + + E ++ ++ + L +G +
Sbjct: 635 AQRAGRTMRPTG-------------SALVYVLATRGSSEEEFAQRQMRHLARKGVRVR 679
>gi|320101410|ref|YP_004177002.1| DNA repair helicase RAD25 [Desulfurococcus mucosus DSM 2162]
gi|319753762|gb|ADV65520.1| DNA repair helicase RAD25 [Desulfurococcus mucosus DSM 2162]
Length = 561
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 125/422 (29%), Positives = 188/422 (44%), Gaps = 67/422 (15%)
Query: 12 VNPDL-NMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS 70
V P+L N++L R YQ ++L K N G+I LP G+GK+L+GV+A
Sbjct: 168 VKPELRNVDL------RDYQREALGKWVEN--KHRGVIALPTGSGKTLIGVAALVETGVR 219
Query: 71 CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKR 130
L + + QW ++ I+ I S+ K A V +TTY G R
Sbjct: 220 SLIVVYTKEQMMQWRDAILKYTNIEPSMIGLIHSEEKR----PAPVTITTYQ----SGFR 271
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITD 190
+ + +L++DEVH +PA FR + + + ++GL+AT RED R +
Sbjct: 272 QINTLSPF-------FDMLIIDEVHHLPAEKFRHIAVHSIARYRMGLSATPFREDGRHEE 324
Query: 191 LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT-------KEFFSEYLKKENSKKKQ 243
L L+G +Y DLV G++A + V ++ +E +Y S+ +
Sbjct: 325 LFPLLGGVVYYKTPNDLVSMGYLARYRVVTVKTRLSGEERKAYEELRRKYWALAGSRDFK 384
Query: 244 ALYVMNPNKFRACEFLIRFHEQQR-----------------------GDKIIVFADNLFA 280
+ RA E L R H Q R G KIIVF +
Sbjct: 385 QVVEDARTDPRAREAL-RVHSQMRSILARAKAKIDKAVEIARSELEKGGKIIVFTQYVDQ 443
Query: 281 LTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340
E + +L ++ G ER +IL+ FK + D + ++ VGD +DIP+ANV I +S
Sbjct: 444 AREISERLNAYLLTGEIPTEERKRILEEFKNT-DKGILVVTTVGDEGLDIPDANVGIMVS 502
Query: 341 SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400
GSRRQ QRLGR+LR K GGKE A Y ++ T E + + KR+
Sbjct: 503 G-TGSRRQFIQRLGRLLRPK-------PGGKE---AVLYEIILEKTSEEYQARKRKNMGF 551
Query: 401 DQ 402
D+
Sbjct: 552 DE 553
>gi|448365465|ref|ZP_21553845.1| type III restriction protein res subunit [Natrialba aegyptia DSM
13077]
gi|445655004|gb|ELZ07851.1| type III restriction protein res subunit [Natrialba aegyptia DSM
13077]
Length = 671
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/385 (26%), Positives = 172/385 (44%), Gaps = 36/385 (9%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ + + G G+ V P G+GK++ + A ++ L L + QWA
Sbjct: 311 RDYQRTWIDRFAEAG---EGVFVGPPGSGKTVAAMGAMAHVEGETLVLVPSRDLARQWAE 367
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
+ ++++ QI ++ K V + TY + RS +REW
Sbjct: 368 TIEEFTSLGPHQIGQYHGGQK----NVRPVTIATYQIAGMDRHRSL--------FDDREW 415
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GL++ DE VP+ ++R+ L H +LGL+A+ +RED+R T++ L+GP + +W
Sbjct: 416 GLVIFDECQHVPSDVYRRSTHLQSRH-RLGLSASPIREDDRQTEIFTLVGPPIG-TDWQA 473
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQ 266
L GF+A + + P + + +++ + N K +L+ +
Sbjct: 474 LFDDGFVAEPELEIRYVPWGDDEQQNAYASADGRERYRIAAQNRGKIDEIRYLL---AAE 530
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSH-VERTKILQAFKCSRDLNTIFLSKVGD 325
K ++F D L E A L P + G T H R + + + RDL + +S+VGD
Sbjct: 531 PNSKALIFVDYLDQGGELATALDVPFLSGETPHHERRRLLEEFRRDERDL--LIVSRVGD 588
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P A++ I S GSRRQ QR GR +R G A Y L +
Sbjct: 589 EGIDLPTADLAIVASGLGGSRRQGTQRAGRTMRPAG-------------GALVYVLATRG 635
Query: 386 TQEMFYSTKRQQFLIDQGYSFKVIT 410
T+E ++ ++ Q L +G + + T
Sbjct: 636 TREEDFARRQLQHLGRKGMTVREET 660
>gi|222479956|ref|YP_002566193.1| type III restriction protein res subunit [Halorubrum lacusprofundi
ATCC 49239]
gi|222452858|gb|ACM57123.1| type III restriction protein res subunit [Halorubrum lacusprofundi
ATCC 49239]
Length = 658
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 111/413 (26%), Positives = 176/413 (42%), Gaps = 53/413 (12%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V+ DL +L R YQE + ARSG+ V P G+GK++ ++ I
Sbjct: 279 GDPVDIDLTTDL------RSYQETWVETFLD---ARSGVYVGPPGSGKTVAAIATIAAIG 329
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + ST+ I + KE V + TY +
Sbjct: 330 GETLILVPSRELAGQWREELLEHSTVDPADIGLYHGGQKE----IRPVTIATYQIAGMDR 385
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R+ +R+WGL+ DE H + A +F + L H +LGL+AT VRE
Sbjct: 386 HRAL--------FDSRKWGLICFDEAHHITAPIFSRSAELQAKH-RLGLSATPVRETGSE 436
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W +L + GF+ + + P E + ++++ L
Sbjct: 437 EEIYTLIG-RPIGADWDELFEAGFVQEPEVEIRYVPWRDEMARNEYASADGRERRRLAAE 495
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P I G T H ER ++ +
Sbjct: 496 NPAKIEEIRYLLAAH---RDKKALVFIEYLDQGEAIADALGVPFISGETPHHERAELFRR 552
Query: 309 FKCSR--------------DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLG 354
F+ D++T+ +S+VGD ID+P A + I S GSRRQ +QR G
Sbjct: 553 FREEGTEGGEREGIGADGDDVDTLVVSRVGDEGIDLPNAELAIVASGLGGSRRQGSQRAG 612
Query: 355 RILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
R +R G +A Y L + + E ++ ++ + L +G +
Sbjct: 613 RTMRPTG-------------SALVYVLATRGSSEEEFAQRQMRHLARKGIRVR 652
>gi|389860558|ref|YP_006362797.1| DNA repair helicase RAD25 [Thermogladius cellulolyticus 1633]
gi|388525461|gb|AFK50659.1| DNA repair helicase RAD25 [Thermogladius cellulolyticus 1633]
Length = 545
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 121/402 (30%), Positives = 183/402 (45%), Gaps = 63/402 (15%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQE++L+K N +GII LP G+GK+++GV+A +I + L + QW
Sbjct: 167 RDYQEEALAKWLEN--KGTGIIALPTGSGKTVIGVAAITKISERTLIVTYTKEQAVQWRE 224
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
++ + S+ K A + +TTY F ++I+EI ++
Sbjct: 225 TILKYTNTPSHMVGLLYSEEKR----IAPITITTYQ-TGF---------RMIKEIAP-QY 269
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
LL++DEVH +PA FR + + ++GL+AT RED R +L L+G +Y +
Sbjct: 270 SLLIVDEVHHLPADKFRFIAVHAVAPYRMGLSATPYREDGRHEELFPLLGGVVYYKTPGE 329
Query: 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLK------------------------------- 235
L + G++A V + + EYL+
Sbjct: 330 LAEQGYLARYVVYTVKTRLPPNEWKEYLELRTVFEKYAAGRTFEQLVDDASRGDKSAAEA 389
Query: 236 -KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIY 294
+ +SK + L +A E I E +G KIIVF + E A +L ++
Sbjct: 390 LRVHSKIRGILAKSKAKIEKAVE--IARSELAKGGKIIVFTQYVEQAEELAKRLNAWLLT 447
Query: 295 GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLG 354
G T ER + L+ FK ++ + ++ VGD +DIP+ANV I I S GSRRQ QRLG
Sbjct: 448 GETPGEERRRALEEFKSAKS-GILVVTTVGDEGLDIPDANVGI-IVSGTGSRRQFVQRLG 505
Query: 355 RILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQ 396
RILR K GG E A Y +V T E F + KR+
Sbjct: 506 RILRPK-------PGGGE---ARLYEIVLEKTSEEFQARKRK 537
>gi|119720665|ref|YP_921160.1| type III restriction enzyme, res subunit [Thermofilum pendens Hrk
5]
gi|119525785|gb|ABL79157.1| DNA repair helicase RAD25 [Thermofilum pendens Hrk 5]
Length = 451
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 115/433 (26%), Positives = 195/433 (45%), Gaps = 78/433 (18%)
Query: 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65
+F +D ++P Q R YQE++L + R G++VLP GAGK++V ++A
Sbjct: 54 EFEDDVLHPPQCKLQAREVQLRDYQEEALERWMAG---RRGVVVLPTGAGKTMVALAAIA 110
Query: 66 RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN----AGVVVTTY 121
R+ L + +DQW ++ + R + R+ G V V TY
Sbjct: 111 RLACPTLIVVPTLELMDQW-----------EEGVRRHLGVAPGRYGGGEKEVGCVTVATY 159
Query: 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181
+ S + E ++ LL+ DEVH +P+ +R+V L+ + ++GLTAT
Sbjct: 160 D-----------SAYVNAEFLGDKFELLVFDEVHHLPSPGYRQVAELSAAPWRMGLTATP 208
Query: 182 VREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK- 240
RED L +L+GP +Y ++ G ++A V+ M+ E EY + +
Sbjct: 209 EREDGLHELLPYLVGPVVYRRGVGEMA-GKWLAEFDVVRVYAEMSPEEREEYERLTRTYR 267
Query: 241 ---KKQALYVMNPNKF-----------RACEFLIRFHE--------------------QQ 266
+K+ L + P F A E L+ ++ +
Sbjct: 268 SFLRKRGLRIRGPRDFERLAALSVKDPEAREALLAWYRARRIALHASSKMEVLEELLARH 327
Query: 267 RGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326
RGDK+++FA++ + + + P I T ER ++ AF+ + I SKV +
Sbjct: 328 RGDKVLIFAEHGDVVRRISSRFLVPEITYRTPEEERRAVMSAFRKGL-VRAIVTSKVLEE 386
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386
+D+P+ANV + +S A SRR+ QRLGR+LR +E A Y +V++ T
Sbjct: 387 GVDVPDANVAVILSGTA-SRREFVQRLGRVLRP-----------REGKRAVVYEVVTSGT 434
Query: 387 QEMFYSTKRQQFL 399
+E+ S KR++ L
Sbjct: 435 KEVEISRKRRKAL 447
>gi|448537455|ref|ZP_21622605.1| type III restriction protein res subunit [Halorubrum hochstenium
ATCC 700873]
gi|445702081|gb|ELZ54048.1| type III restriction protein res subunit [Halorubrum hochstenium
ATCC 700873]
Length = 652
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 108/407 (26%), Positives = 174/407 (42%), Gaps = 47/407 (11%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V DL EL R YQ+ + + +SG+ V P G+GK++ ++ +
Sbjct: 279 GDPVEIDLTTEL------RDYQQTWVDQFLDR---KSGVYVGPPGSGKTVAAIATIAAVG 329
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + DQW + ST+ I + +KE V + TY +
Sbjct: 330 GETLILVPSRELADQWREELLEHSTVDPADIGLYHGGTKE----VRPVTIATYQIAGMDR 385
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
RS +REWGL+ DE H V A ++ + L H +LGL+AT V E
Sbjct: 386 HRSL--------FDSREWGLICFDEAHHVTAPVYSRTAELQSKH-RLGLSATPVSETGSE 436
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W L + GF+ + + P E + ++++ +
Sbjct: 437 EEIYTLIGGPIG-ADWDALFEAGFVQEPEVEIRYVPWRDELAESEYAAADGRERRRVAAE 495
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P I G T H ER ++ +
Sbjct: 496 NPAKIEELRYLLAAH---RDKKALVFVEYLDHGNAIADALDAPFISGETPHHERAELFRR 552
Query: 309 FKC--------SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
F+ DL+ + +S+VGD ID+P A + + S GSRRQ +QR GR +R
Sbjct: 553 FRAEGADAEDAGDDLDVLVVSRVGDEGIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPT 612
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
G +A Y L + + E ++ ++ + L +G +
Sbjct: 613 G-------------SALVYVLATRGSSEEEFAQRQMRHLGRKGVRVR 646
>gi|448466577|ref|ZP_21599163.1| type III restriction protein res subunit [Halorubrum kocurii JCM
14978]
gi|445813838|gb|EMA63812.1| type III restriction protein res subunit [Halorubrum kocurii JCM
14978]
Length = 648
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 112/409 (27%), Positives = 177/409 (43%), Gaps = 49/409 (11%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V+ DL +L R YQE + ARSG+ V P G+GK++ ++ +
Sbjct: 273 GDPVDVDLTTDL------RSYQETWVETFLD---ARSGVYVGPPGSGKTVAAIATIAAVG 323
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + STI I + KE V + TY +
Sbjct: 324 GETLILVPSRELAGQWREELLDHSTIDPADIGLYHGGQKE----IRPVTIATYQIAGMDR 379
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R+ +R+WGL+ DE H V A ++ + L H +LGL+AT VRE
Sbjct: 380 HRAL--------FDSRKWGLICFDECHHVTAPVYSRTAELQSKH-RLGLSATPVRETGSE 430
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W +L + GF+ + + P E + ++++ L
Sbjct: 431 EEIYTLIG-RPIGADWDELFEAGFVQEPEVEIRYVPWRDELAQNEYASADGRERRRLAAE 489
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P I G T H ER ++ +
Sbjct: 490 NPAKIEEIRYLLAAH---RDKKALVFIEFLDQGEAIADALGVPFISGETPHYERAELFRR 546
Query: 309 FK---------CSRD-LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358
F+ RD ++T+ +S+VGD ID+P A + I S GSRRQ +QR GR +R
Sbjct: 547 FREEGDEPSADADRDDVDTLVVSRVGDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMR 606
Query: 359 AKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
G +A Y L + + E ++ ++ + L +G +
Sbjct: 607 PTG-------------SALVYVLATRGSSEEEFAQRQMRHLARKGIRVR 642
>gi|433593530|ref|YP_007296271.1| DNA/RNA helicase, superfamily II [Natrinema pellirubrum DSM 15624]
gi|448333319|ref|ZP_21522522.1| type III restriction protein res subunit [Natrinema pellirubrum DSM
15624]
gi|433308040|gb|AGB33851.1| DNA/RNA helicase, superfamily II [Natrinema pellirubrum DSM 15624]
gi|445623147|gb|ELY76580.1| type III restriction protein res subunit [Natrinema pellirubrum DSM
15624]
Length = 470
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 123/425 (28%), Positives = 195/425 (45%), Gaps = 76/425 (17%)
Query: 14 PDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73
P L++ H +PR YQ+ +L +GR G +VLP G+GK+ +G+ A S L
Sbjct: 73 PALDLTPPLHIEPRDYQQAALDAWIDHGR--QGSVVLPTGSGKTFLGLQAIADAGVSALV 130
Query: 74 LATNAVSVDQWAFQFKLWSTIQD---DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKR 130
+ ++QW L + D + I S E + VTTY+
Sbjct: 131 VTPTIDLMNQW--HATLTNAFGDHLTEPIGVLGGGSHE----VTAITVTTYD-------- 176
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITD 190
+ + I E + ++GLL++DE H +PA +R++ +T + +LGLTAT R D +
Sbjct: 177 --SAYRYINEYGD-QFGLLVVDEEHHLPAPTYRQIPEMTIAPYRLGLTATYERPDGKHEL 233
Query: 191 LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT------------------------ 226
L LIGP +YE +D + G +++ + + +T
Sbjct: 234 LEDLIGPVVYEEA-VDELAGEYLSEYETIHMSVELTAEERETYDEEYQHYRDYVDSHEFD 292
Query: 227 ---KEFFSEYLKKE--NSKKKQALYVMN---------PNKFRACEFLIRFHEQQRGDKII 272
+E + E+LK+ + K ++AL K + L++ H R II
Sbjct: 293 LWKEEGYQEFLKRTSYDPKGRRALIAKQRAERIARTAEKKLETLDNLLKRHHDDRA--II 350
Query: 273 VFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332
A+N FA E + + P I T ERT+IL+ F+ + + + S+V D ID+P
Sbjct: 351 FTANNDFAY-EISQEFIVPCITHQTKTDERTEILERFRTG-EYSMLATSRVLDEGIDVPA 408
Query: 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392
ANV I +S A S+RQ AQRLGRILR +DR A Y +++ DT E + S
Sbjct: 409 ANVGIILSGSA-SKRQYAQRLGRILRPT---DDRQP-------ARLYEIITADTMETYVS 457
Query: 393 TKRQQ 397
+R+Q
Sbjct: 458 QQRRQ 462
>gi|148508019|gb|ABQ75817.1| DNA repair helicase [uncultured haloarchaeon]
Length = 259
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/261 (30%), Positives = 138/261 (52%), Gaps = 19/261 (7%)
Query: 143 NREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA 202
+R WGL++ DEVH +P+ +FR+ +L H +LGL+AT VRED++ +++ L+GP +
Sbjct: 10 SRRWGLIIYDEVHHIPSKVFRRSTTLQGKH-RLGLSATPVREDKKESEIFTLVGPPIG-I 67
Query: 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262
+W +L++ G + Q + + + ++K+ L NP K L+
Sbjct: 68 DWSELIEAGHVREPQVEIRYLSWQDDLAQNEWANADGRQKRRLAAENPEKITHISKLLAD 127
Query: 263 HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322
H ++++F + L + KL P I G H ER +I ++FK +L+T+ +S+
Sbjct: 128 HASA---QVLIFVEWLDQGDAISEKLEIPFINGEMPHRERERIFESFKAG-ELSTMVVSR 183
Query: 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382
VGD ID+P A++ I S GSRRQ AQR+GR +R G ++ Y L
Sbjct: 184 VGDEGIDLPNADMAILASGLGGSRRQGAQRVGRTMRPAG-------------SSIAYVLA 230
Query: 383 STDTQEMFYSTKRQQFLIDQG 403
+ T+E ++ ++ Q L ++G
Sbjct: 231 TRGTREEEFAQRQMQHLSEKG 251
>gi|296242953|ref|YP_003650440.1| DNA repair helicase RAD25 [Thermosphaera aggregans DSM 11486]
gi|296095537|gb|ADG91488.1| DNA repair helicase RAD25 [Thermosphaera aggregans DSM 11486]
Length = 550
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/422 (28%), Positives = 192/422 (45%), Gaps = 66/422 (15%)
Query: 15 DLNMELKP---HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71
D + LKP + R YQ+++L K N GI+ LP G+GK+L+GVSA +
Sbjct: 152 DKLLPLKPELVNVSLRNYQQEALDKWRSNNY--QGIVALPTGSGKTLIGVSAVVLTGRRS 209
Query: 72 LCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRS 131
L + + QW + I I S+ K A + + TY
Sbjct: 210 LIITYTREQMFQWRDVIVRSTNIPQSMIGLMYSEEKRL----APITIITY---------- 255
Query: 132 EESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDL 191
+ +II EI + + LL++DEVH +PA F+ + + + +LGL+AT RED + +L
Sbjct: 256 QSGFRIISEI-SPLFDLLIVDEVHHLPADKFKHIAVHSIAKYRLGLSATPYREDGKHEEL 314
Query: 192 NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY------------------ 233
L+G +Y +L GF+A + V + K+ +Y
Sbjct: 315 FPLLGGIVYHKTPAELAAMGFLARYRVVTVKVGLKKDELEQYDSLRKLYFKLANGRDFKK 374
Query: 234 ----LKKENSKKKQALYVMNPNKF----------RACEFLIRFHEQQRGDKIIVFADNLF 279
K + + ++AL + + K +A E I E ++G KIIVF +
Sbjct: 375 VLDDALKGDQRAREALKIHSQMKMLLAKSESKLEKAVE--IARDELEKGGKIIVFTQYVE 432
Query: 280 ALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI 339
E + +L ++ G +ER +IL+ FK + + ++ VGD +DIP+ANV I +
Sbjct: 433 QAEELSKRLGAYLLTGEVPPLERKRILEEFKTASK-GILVVTTVGDEGLDIPDANVGIMV 491
Query: 340 SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399
S GSRRQ QRLGR+LR K GG+E A Y +V T E + S +R+
Sbjct: 492 SG-TGSRRQFIQRLGRLLRPK-------PGGEE---ARLYEIVLEKTPEEYQSRRRKTST 540
Query: 400 ID 401
+D
Sbjct: 541 LD 542
>gi|424812223|ref|ZP_18237463.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalinarum sp.
J07AB56]
gi|339756445|gb|EGQ40028.1| DNA or RNA helicase of superfamily II [Candidatus Nanosalinarum sp.
J07AB56]
Length = 540
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 93/353 (26%), Positives = 169/353 (47%), Gaps = 30/353 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
+ N+ DL ++L R YQE+ +++ ++ ++ P G+GK++ + ++
Sbjct: 182 DKNIGCDLTIDL------RDYQEEYVAEAHDR---KAAVLANPSGSGKTVTSIGLMAKVD 232
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +T+ +DQI + KE + + TY+M G
Sbjct: 233 SPTLVLVPQRSLISQWKREITDKTTLTEDQIGEYHGGEKEM----KDITIATYHM---AG 285
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
++ K EWGL++ DEVH +P+ +FRK SL +S ++GL+A+ VRED +
Sbjct: 286 DKTGPFRK--------EWGLIIFDEVHHIPSKLFRKTASL-QSTRRIGLSASPVREDSKE 336
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG ++ +W ++ + ++ +K + +K +
Sbjct: 337 REIFALIGREIG-GDWARFFDQDYVLKPDVDIHFVDWESDYHRMKYQKASGFEKAIIASK 395
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K + F E+ K IVF D + + A + P I G T + ER + +
Sbjct: 396 NPAKM---PMIGEFLEEYEDSKTIVFCDWIEQGEKLAEEFDLPFINGETDYDEREEYFER 452
Query: 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
++ +++T+ +S++GD +D+P+A V I S GSRRQ QR GR++R G
Sbjct: 453 YREG-EIDTVIVSRIGDEGLDLPDAEVGIVASGQGGSRRQATQRAGRVMRPFG 504
>gi|448640630|ref|ZP_21677533.1| DNA repair helicase [Haloarcula sinaiiensis ATCC 33800]
gi|448651341|ref|ZP_21680410.1| DNA repair helicase [Haloarcula californiae ATCC 33799]
gi|445761940|gb|EMA13179.1| DNA repair helicase [Haloarcula sinaiiensis ATCC 33800]
gi|445770868|gb|EMA21926.1| DNA repair helicase [Haloarcula californiae ATCC 33799]
Length = 621
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 160/354 (45%), Gaps = 29/354 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ+ + + G SG+ V P G+GK++ + A I
Sbjct: 249 GDAIEMDLRLRL------RDYQQDWVERFTEQG---SGVFVGPPGSGKTVAAMGAMAAIG 299
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ DD I + KE V + TY
Sbjct: 300 GETLILVPSRELATQWRDELVRHTSLTDDDIGEYHGGEKE----IRAVTIATYRTAGMDR 355
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R K+ ++ R+WGL++ DEVH VP+ + R+ L H +LGLTAT RE +
Sbjct: 356 HR-----KLFDQ---RKWGLIVFDEVHHVPSPIHRRSADLQTKH-RLGLTATPTRESDDE 406
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQALYV 247
++ LIGP + +W L G++A + P E SEY ++QA
Sbjct: 407 EEIFTLIGPPIG-TDWGKLFDEGYVAEPEVEIRLVPWGDETEQSEYSSTSGHDRRQAA-A 464
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
N K + + + + I + D A++E + P I G T H R K+
Sbjct: 465 SNTGKIDEIRYALAENPAAKALVFIEYLDQGEAISE---AIDAPFISGETPHARREKLFD 521
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
F+ +L T+ +S+VGD ID+P+A + + S GSRRQ AQR GR +R G
Sbjct: 522 EFRRG-ELTTLVVSRVGDEGIDLPDAELALVASGLGGSRRQGAQRAGRTMRPAG 574
>gi|20091234|ref|NP_617309.1| DNA repair protein [Methanosarcina acetivorans C2A]
gi|19916351|gb|AAM05789.1| DNA repair protein [Methanosarcina acetivorans C2A]
Length = 481
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 120/424 (28%), Positives = 188/424 (44%), Gaps = 72/424 (16%)
Query: 14 PDLNMELKPHAQP---RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS 70
PDL+ + + R YQ ++L N + G++VLP G+GK+L+G+ A
Sbjct: 63 PDLSAAYEASGKKLKLRDYQAEALVAWSEN--EKWGVLVLPTGSGKTLLGIRAIAGCNTP 120
Query: 71 CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKR 130
L + ++QW Q ++ +++ I + K+ + V+TY+
Sbjct: 121 ALVIVPTLDLLEQWKTQLEVAFSME---IGKLGGGEKKIL----PITVSTYD-------- 165
Query: 131 SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITD 190
S I E +GLL+ DEVH +PA +R + + + C+LGLTAT RED T+
Sbjct: 166 ---SAYIHAETLGNRFGLLVFDEVHHLPAAGYRSIAEFSAAPCRLGLTATYEREDGLHTE 222
Query: 191 LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE----------FFSEYLKK---- 236
LN L+G K+YE +L GG +A +T++ F +YL+K
Sbjct: 223 LNRLVGGKVYEKKVSELA-GGHLAPYTIKRFAVTLTEKEQREYDRNYSVFLDYLRKTGML 281
Query: 237 ---------------ENSKKKQALYVMNP------NKFRACEFLIRFHEQQRGDKIIVFA 275
+ + ++AL N N E L EQ R D++ +F
Sbjct: 282 MRGARDFQKLVMKSGRDPEARKALLARNAARDLAFNSNSKIEKLREILEQHREDRVFIFT 341
Query: 276 DNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANV 335
++ + + P I T ER IL+ F+ + SKV D ID+PEAN+
Sbjct: 342 EHNRLVHRISNTFFIPAITYRTPAKERNSILEKFRTG-SYRAVVTSKVLDEGIDVPEANI 400
Query: 336 IIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395
I I S GS+R QRLGRILR K GKE A Y +++ +T E + +R
Sbjct: 401 GI-IVSGTGSKRAYVQRLGRILRKK--------EGKE---AVLYEIIAGETTETGTARRR 448
Query: 396 QQFL 399
++ L
Sbjct: 449 KEAL 452
>gi|55377101|ref|YP_134951.1| DNA repair helicase [Haloarcula marismortui ATCC 43049]
gi|55229826|gb|AAV45245.1| DNA repair helicase [Haloarcula marismortui ATCC 43049]
Length = 470
Score = 135 bits (340), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 104/354 (29%), Positives = 160/354 (45%), Gaps = 29/354 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ+ + + G SG+ V P G+GK++ + A I
Sbjct: 98 GDAIEMDLRLRL------RDYQQDWVERFTEQG---SGVFVGPPGSGKTVAAMGAMAAIG 148
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ DD I + KE V + TY
Sbjct: 149 GETLILVPSRELATQWRDELVRHTSLTDDDIGEYHGGEKE----IRAVTIATYRTAGMDR 204
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R K+ ++ R+WGL++ DEVH VP+ + R+ L H +LGLTAT RE +
Sbjct: 205 HR-----KLFDQ---RKWGLIVFDEVHHVPSPIHRRSADLQTKH-RLGLTATPTRESDDE 255
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQALYV 247
++ LIGP + +W L G++A + P E SEY ++QA
Sbjct: 256 EEIFTLIGPPIG-TDWGKLFDEGYVAEPEVEIRLVPWGDETEQSEYSSTSGHDRRQAA-A 313
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
N K + + + + I + D A++E + P I G T H R K+
Sbjct: 314 SNTGKIDEIRYALAENPAAKALVFIEYLDQGEAISE---AIDAPFISGETPHARREKLFD 370
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
F+ +L T+ +S+VGD ID+P+A + + S GSRRQ AQR GR +R G
Sbjct: 371 EFRRG-ELTTLVVSRVGDEGIDLPDAELALVASGLGGSRRQGAQRAGRTMRPAG 423
>gi|448734001|ref|ZP_21716234.1| DNA repair helicase Rad25 [Halococcus salifodinae DSM 8989]
gi|445801557|gb|EMA51889.1| DNA repair helicase Rad25 [Halococcus salifodinae DSM 8989]
Length = 486
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 118/432 (27%), Positives = 197/432 (45%), Gaps = 80/432 (18%)
Query: 14 PDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73
P L ++ +PR YQ+ +L + R G +VLP G+GK+ +G+ A S L
Sbjct: 81 PALALDPALQIEPREYQQAALDAWRTHDR--RGSVVLPTGSGKTFLGIQAIADAGVSTLV 138
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG--------VVVTTYNMVA 125
+A ++QW + DQ+ + + D E+ G G V VTTY+
Sbjct: 139 IAPTIDLMNQWHATL---TNAFGDQLPQRSGDGPEQAVGVLGGGTHEIRPVTVTTYD--- 192
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
+ + I+E + ++GLL+ DE+H +PA +R++ +T + +LGLTAT R D
Sbjct: 193 -------SAYRYIDEYGD-QFGLLIADEIHHLPAPTYRQIPEMTIAPYRLGLTATYERAD 244
Query: 186 E--RITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE----------FFSEY 233
+ + + LIGP +YE +D + G +++ + + +T + + EY
Sbjct: 245 DAHELLEDTGLIGPVVYEEE-VDELAGEYLSEYETIHMQVELTDDERTQYDEEYGIYREY 303
Query: 234 LKKEN----------------------------SKKKQALYVMNPNKFRACEFLIRFHEQ 265
+ + ++ + L K + L++ H
Sbjct: 304 VDTHDFDLWKAEGYQEFLAHTSYDSDGRRALIAKQRAEELARTASKKLDTLDTLLKRHHD 363
Query: 266 QRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325
R II A+N FA E + + P I T ERT+IL+ F+ + + + S+V D
Sbjct: 364 DR--TIIFTANNDFAY-EISQEFIAPCITHQTKTDERTEILERFRTG-EYSILATSQVLD 419
Query: 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385
ID+P ANV + +S A S+RQ AQRLGRILR +DR A Y +++TD
Sbjct: 420 EGIDVPAANVGVILSGSA-SKRQYAQRLGRILRPT---DDRQP-------ARLYEIIATD 468
Query: 386 TQEMFYSTKRQQ 397
T E + S +R++
Sbjct: 469 TMENYVSQRRRE 480
>gi|14279304|gb|AAK58563.1|AF265295_1 Rad25-like protein [Methanosarcina thermophila]
Length = 489
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 118/412 (28%), Positives = 177/412 (42%), Gaps = 69/412 (16%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ ++L N + G++VLP G+GK+LVG+ A L + ++QW
Sbjct: 79 RDYQAEALVSWGENDKW--GVLVLPTGSGKTLVGIRAIAGCNTPALVVVPTLDLLEQWKK 136
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
Q + +++ I + K+ + V+TY+ S I EI +
Sbjct: 137 QLEEAFSME---IGKLGGGEKKIL----PITVSTYD-----------SAYIHAEILGNRF 178
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
GLL+ DEVH +PA +R + + C+LGLTAT RED T+LN L G K+YE +
Sbjct: 179 GLLIFDEVHHLPAVGYRSIAEFFAAPCRLGLTATYEREDGLHTELNRLAGGKVYEKKVSE 238
Query: 207 LVKGGFIANVQCAEVWCPMT----KEFFSEYLKKENSKKKQALYVMNPNKFRA------- 255
L GG +A +T +E+ Y N KK L + P FR
Sbjct: 239 LA-GGHLAPYTIKRTSVTLTAGEQREYDRNYSVFLNYLKKTGLIMRGPQDFRKLVMKSGR 297
Query: 256 ------------------------CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP 291
E L E+ R D++ +F ++ + + P
Sbjct: 298 DPEARKALLARNAARDLAFNSDSKIEKLREILEEHREDRVFIFTEHNRLVHRISNTFFIP 357
Query: 292 MIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351
I T ER IL+ F+ + SKV D ID+PEANV + I S GS+R Q
Sbjct: 358 AITYRTPSKERNSILEKFRIG-SYRAVVTSKVLDEGIDVPEANVGV-IVSGTGSKRAYVQ 415
Query: 352 RLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403
RLGRILR KE A Y +++++T E + +R++ L + G
Sbjct: 416 RLGRILRK-----------KEGKKAVLYEIIASETSETGTAQRRKEALDNAG 456
>gi|385805791|ref|YP_005842189.1| type III restriction enzyme, res subunit [Fervidicoccus fontis
Kam940]
gi|383795654|gb|AFH42737.1| type III restriction enzyme, res subunit [Fervidicoccus fontis
Kam940]
Length = 559
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 122/405 (30%), Positives = 195/405 (48%), Gaps = 60/405 (14%)
Query: 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86
R YQ+++L + N +R GII LP G+GK+++G +A + + L + + QW
Sbjct: 171 RNYQKEALES-WKNNSSR-GIIALPTGSGKTVIGAAAIAELGEMTLIITYTKEQLLQWME 228
Query: 87 QFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREW 146
K ++ I I F S+ K A + ++TY AF + I+ + R +
Sbjct: 229 MLKNFTDIPQSMIAAFYSEEKRI----APITISTYQ-TAF---------RHIKTLAYR-F 273
Query: 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206
LL++DEVH +PA F+ + S +LGL+AT++RED + +L L+G +Y +
Sbjct: 274 SLLVVDEVHHLPADKFKTIALGMYSPHRLGLSATVIREDGKHVELFPLMGGVIYYKTPQE 333
Query: 207 LVKGGFIANVQCAEVWCPMTKEF-------------------FSEYLKKE---NSKKKQA 244
LV+ GF++ V ++KE F+E LK+ +S+ +A
Sbjct: 334 LVEKGFLSPYASYIVKVGLSKEEEEKYEKLKNIYKALTLGIPFAEVLKRAKSGDSRMAKA 393
Query: 245 LYVMNP-----NKFRACEFLIRF---HEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGA 296
L + N K +A E ++ E + G KI+VF + + L P++ G+
Sbjct: 394 LKIHNEMVQIYQKAKAKEEAVKKIVEQELKNGSKILVFTQYVEQAEKLGNMLGAPVLTGS 453
Query: 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRI 356
T R KIL+ FK ++ + L+ VGD +DIP+ NV I I + GSRRQ QRLGR+
Sbjct: 454 TETKLRKKILEDFKKAQS-GVLVLTTVGDEGLDIPDVNVGI-IVAGTGSRRQFVQRLGRL 511
Query: 357 LRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLID 401
LR K E A Y +V+ T E + KR++ ID
Sbjct: 512 LRP-----------KPEKTAKLYEIVTKGTAEESLARKRKKLEID 545
>gi|448630375|ref|ZP_21673030.1| DNA repair helicase [Haloarcula vallismortis ATCC 29715]
gi|445756298|gb|EMA07673.1| DNA repair helicase [Haloarcula vallismortis ATCC 29715]
Length = 621
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 161/354 (45%), Gaps = 29/354 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ+ + + G SG+ V P G+GK++ + A I
Sbjct: 249 GDAIEMDLRLRL------RDYQQDWVERFTEQG---SGVFVGPPGSGKTVAAMGAMAAIG 299
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ DD I + KE V + TY
Sbjct: 300 GETLILVPSRELATQWRDELVRHTSLTDDDIGEYHGGEKE----IRPVTIATYRTAGMDR 355
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R K+ ++ R+WGL++ DEVH VP+ + R+ L H +LGLTAT RE +
Sbjct: 356 HR-----KLFDQ---RKWGLIVYDEVHHVPSPIHRRSADLQTKH-RLGLTATPTRESDDE 406
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQALYV 247
++ L+GP + +W L G++A + P E SEY ++QA
Sbjct: 407 EEIFTLVGPPIG-TDWGKLFDEGYVAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQAA-A 464
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
N K + + + + I + D A++E + P I G T H R K+
Sbjct: 465 SNTGKIDEIRYALAENPAAKALVFIEYLDQGEAISE---AIDAPFISGETPHARREKLFD 521
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
F+ +L+T+ +S+VGD ID+P+A + + S GSRRQ AQR GR +R G
Sbjct: 522 EFRRG-ELDTLVVSRVGDEGIDLPDAELALVASGLGGSRRQGAQRAGRTMRPAG 574
>gi|448453685|ref|ZP_21594028.1| type III restriction protein res subunit [Halorubrum litoreum JCM
13561]
gi|445807485|gb|EMA57570.1| type III restriction protein res subunit [Halorubrum litoreum JCM
13561]
Length = 642
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 39/373 (10%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
+SG+ V P G+GK++ ++ + L L + DQW + ST+ I +
Sbjct: 294 KSGVYVGPPGSGKTVAAIATIAAVGGETLILVPSRELADQWREELLDHSTVDPADIGLYH 353
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+K+ V + TY + RS +REWGL+ DE H V A ++
Sbjct: 354 GGTKD----VRPVTIATYQIAGMDRHRSL--------FDSREWGLICFDEAHHVSAPVYS 401
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT V E ++ LIG + A+W L + GF+ + +
Sbjct: 402 RTAELQSKH-RLGLSATPVSETGSEEEIYTLIGQPIG-ADWDSLFEAGFVQEPEVEIRYV 459
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
P E + ++++ L NP K +L+ H R K +VF + L E
Sbjct: 460 PWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH---RDKKALVFVEYLDHGRE 516
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKC---------SRDLNTIFLSKVGDNSIDIPEAN 334
A L P I G T H ER ++ + F+ + DL+ + +S+VGD ID+P A
Sbjct: 517 IADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVGDEGIDLPNAE 576
Query: 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394
+ + S GSRRQ +QR GR +R G +A Y L + + E ++ +
Sbjct: 577 LAVVASGLGGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGSSEEEFAQR 623
Query: 395 RQQFLIDQGYSFK 407
+ + L +G +
Sbjct: 624 QMRHLGRKGVRVR 636
>gi|385804004|ref|YP_005840404.1| DNA repair helicase Rad25 [Haloquadratum walsbyi C23]
gi|339729496|emb|CCC40758.1| DNA repair helicase Rad25 [Haloquadratum walsbyi C23]
Length = 440
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 122/428 (28%), Positives = 192/428 (44%), Gaps = 72/428 (16%)
Query: 4 EYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63
E ++ N+ +N + EL + R YQ+++L++ R G++VLP GAGK+ VG+ A
Sbjct: 49 EVEYENNVLNLVPSPELTSEIELRGYQQQALNRWLSE---RRGVVVLPTGAGKTYVGIEA 105
Query: 64 ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123
I S + VDQW + ++++ I +T R + + V+TY+
Sbjct: 106 IDEINNSTFVVVPTLDLVDQWKSELQVFNL----PIGEYTG----RQKTIKSITVSTYDS 157
Query: 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183
E++ NR + LL+ DEVH + + +R++ L S LGLTAT R
Sbjct: 158 AYTHA----------EKLGNR-FELLIFDEVHHLASEGYRQIAELFASPFALGLTATFER 206
Query: 184 EDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK----------EFFSEY 233
ED + L L+G K+YE +L G +++ + +T E F +Y
Sbjct: 207 EDGKHEVLGELLGGKVYEIETEELT-GEYLSEYTVERITVDLTSEERKAYDENVETFRKY 265
Query: 234 L--------KKENSKKKQALYVMNPNKFRAC-----------------EFLIRFHEQQRG 268
L E+ +K +P +RA + L EQ R
Sbjct: 266 LMSTDITMRSPEDFQKVVLRSGNDPEAWRAVRSRNTARQIAYSSESKLDELATLLEQHRD 325
Query: 269 DKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328
D+II+F + + + + P I T ER +IL+ FK + N I S+V + I
Sbjct: 326 DRIIIFTRYNDLVYDVSNRFFIPSITYTTKKSERQQILKQFKNN-TYNAIVSSQVLNEGI 384
Query: 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388
D+P+AN+ I I S GS R+ QRLGRILR G A Y +VS+ T E
Sbjct: 385 DVPDANIGI-ILSGTGSNREYRQRLGRILRPSGD------------TAHLYEIVSSGTGE 431
Query: 389 MFYSTKRQ 396
+ ST+R+
Sbjct: 432 IRTSTRRK 439
>gi|448428101|ref|ZP_21584201.1| type III restriction protein res subunit [Halorubrum terrestre JCM
10247]
gi|445676885|gb|ELZ29399.1| type III restriction protein res subunit [Halorubrum terrestre JCM
10247]
Length = 642
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 39/373 (10%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
+SG+ V P G+GK++ ++ + L L + DQW + ST+ I +
Sbjct: 294 KSGVYVGPPGSGKTVAAIATIAAVGGETLILVPSRELADQWREELLDHSTVDPADIGLYH 353
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+K+ V + TY + RS +REWGL+ DE H V A ++
Sbjct: 354 GGTKD----VRPVTIATYQIAGMDRHRSL--------FDSREWGLICFDEAHHVSAPVYS 401
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT V E ++ LIG + A+W L + GF+ + +
Sbjct: 402 RTAELQSKH-RLGLSATPVSETGSEEEIYTLIGQPIG-ADWDSLFEAGFVQEPEVEIRYV 459
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
P E + ++++ L NP K +L+ H R K +VF + L E
Sbjct: 460 PWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH---RDKKALVFVEYLDHGRE 516
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKC---------SRDLNTIFLSKVGDNSIDIPEAN 334
A L P I G T H ER ++ + F+ + DL+ + +S+VGD ID+P A
Sbjct: 517 IADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVGDEGIDLPNAE 576
Query: 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394
+ + S GSRRQ +QR GR +R G +A Y L + + E ++ +
Sbjct: 577 LAVVASGLGGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGSSEEEFAQR 623
Query: 395 RQQFLIDQGYSFK 407
+ + L +G +
Sbjct: 624 QMRHLGRKGVRVR 636
>gi|448689019|ref|ZP_21694756.1| DNA repair helicase [Haloarcula japonica DSM 6131]
gi|445778889|gb|EMA29831.1| DNA repair helicase [Haloarcula japonica DSM 6131]
Length = 621
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 103/354 (29%), Positives = 160/354 (45%), Gaps = 29/354 (8%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D + DL + L R YQ+ + + G SG+ V P G+GK++ + A +
Sbjct: 249 GDAIEMDLRLRL------RDYQQDWVERFTEQG---SGVFVGPPGSGKTVAAMGAMAAVG 299
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + +++ DD I + K V + TY
Sbjct: 300 GETLILVPSRELATQWHDELVRHTSLTDDDIGEYHGGEK----SIRPVTIATYRTAGMDR 355
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R K+ ++ R+WGL++ DEVH VP+ + R+ L H +LGLTAT RE +
Sbjct: 356 HR-----KLFDQ---RKWGLIVFDEVHHVPSPIHRRSADLQTKH-RLGLTATPTRESDDE 406
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF-SEYLKKENSKKKQALYV 247
++ LIGP + +W L G++A + P E SEY ++QA
Sbjct: 407 EEIFTLIGPPIG-TDWGKLFDEGYVAEPEVEIRLVPWGNETEQSEYSSTSGHDRRQAA-A 464
Query: 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQ 307
N K + + + + I + D A++E + P I G T H R K+
Sbjct: 465 SNTGKIDEIRYALAENPAAKALVFIEYLDQGEAISE---AIDAPFISGETPHARREKLFD 521
Query: 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
F+ +LNT+ +S+VGD ID+P+A + + S GSRRQ AQR GR +R G
Sbjct: 522 EFRRG-ELNTLVVSRVGDEGIDLPDAELALVASGLGGSRRQGAQRAGRTMRPAG 574
>gi|448493730|ref|ZP_21609161.1| type III restriction protein res subunit [Halorubrum californiensis
DSM 19288]
gi|445689906|gb|ELZ42128.1| type III restriction protein res subunit [Halorubrum californiensis
DSM 19288]
Length = 637
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/335 (28%), Positives = 148/335 (44%), Gaps = 34/335 (10%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
+SG+ V P G+GK++ G++ + L L + DQW + ST+ I +
Sbjct: 281 KSGVYVGPPGSGKTVAGIATIAAVGGETLILVPSRELADQWREELLEHSTVDRADIGLYH 340
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+KE V + TY + RS +REWGL+ DEVH V ++
Sbjct: 341 GGTKE----IRPVTIATYQIAGMDRHRSL--------FDSREWGLICFDEVHHVTGPVYS 388
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ H +LGL+AT V E ++ LIG + A+W L + GF+ + +
Sbjct: 389 RTAEFQSRH-RLGLSATPVSETGSEEEIYTLIGQPI-GADWDSLFEAGFVQEPEVEIRYV 446
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
P E + ++++ L NP K +L+ H R K +VF + L
Sbjct: 447 PWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH---RDKKALVFVEYLDHGRA 503
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKCS--------------RD---LNTIFLSKVGDN 326
A L P I G T H ER ++ + F+ + RD L+ + +S+VGD
Sbjct: 504 IADALDAPFISGETPHHERAELFRRFRAADGDATEGEEDSAGARDDDALDVLVVSRVGDE 563
Query: 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361
ID+P A + + S GSRRQ +QR GR +R G
Sbjct: 564 GIDLPNAELAVVASGLGGSRRQGSQRAGRTMRPTG 598
>gi|448429815|ref|ZP_21584680.1| type III restriction protein res subunit [Halorubrum tebenquichense
DSM 14210]
gi|445689871|gb|ELZ42095.1| type III restriction protein res subunit [Halorubrum tebenquichense
DSM 14210]
Length = 661
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/416 (25%), Positives = 174/416 (41%), Gaps = 56/416 (13%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V+ DL EL R YQ + + +SG+ V P G+GK++ ++ +
Sbjct: 279 GDPVDVDLTTEL------RDYQRAWVDQFLDR---KSGVYVGPPGSGKTVAAIATIAAVG 329
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + DQW + ST+ I + +KE V + TY +
Sbjct: 330 GETLILVPSRELADQWREELLEHSTVDPADIGLYHGGTKE----VRPVTIATYQIAGMDR 385
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
RS +REWGL+ DE H + A ++ + L H +LGL+AT V E
Sbjct: 386 HRSL--------FDSREWGLICFDEAHHITAPVYSRTAELQSKH-RLGLSATPVSETGSE 436
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W L + GF+ + + P E + ++++ +
Sbjct: 437 EEIYTLIGGPIG-ADWDSLFEAGFVQEPEVEIRYVPWRDELAQSEYAAADGRERRRVAAE 495
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P I G T H ER ++ +
Sbjct: 496 NPAKIEEIRYLLAAH---RDKKALVFVEYLDHGNAIADALDAPFISGETPHHERAELFRR 552
Query: 309 FKCSR-----------------DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351
F+ DL+ + +S+VGD ID+P A + + S GSRRQ +Q
Sbjct: 553 FRAEEGDADGDNTEETDGARDDDLDVLVVSRVGDEGIDLPNAELAVVASGLGGSRRQGSQ 612
Query: 352 RLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
R GR +R G +A Y L + + E ++ ++ + L +G +
Sbjct: 613 RAGRTMRPTG-------------SALVYVLATRGSSEEEFAQRQMRHLGRKGVRVR 655
>gi|448732653|ref|ZP_21714923.1| DNA repair helicase Rad25 [Halococcus salifodinae DSM 8989]
gi|445804420|gb|EMA54676.1| DNA repair helicase Rad25 [Halococcus salifodinae DSM 8989]
Length = 486
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/433 (27%), Positives = 197/433 (45%), Gaps = 82/433 (18%)
Query: 14 PDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73
P L ++ +PR YQ+ +L + R G +VLP G+GK+ +G+ A + L
Sbjct: 81 PALALDPALQIEPREYQQAALDAWRTHDR--RGSVVLPTGSGKTFLGIQAIADAGVATLV 138
Query: 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAG--------VVVTTYNMVA 125
+A ++QW + DQ+ R + D E+ G G + VTTY+
Sbjct: 139 VAPTIDLMNQWHATL---TNAFGDQLPRQSGDGPEQVVGVLGGGTHEIRPITVTTYD--- 192
Query: 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVRED 185
+ + I++ + ++GLL+ DE+H +PA +R++ +T + +LGLTAT R D
Sbjct: 193 -------SAYRYIDKYGD-QFGLLIADEIHHLPAPTYRQIPEMTIAPYRLGLTATYERAD 244
Query: 186 ---ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKE----------FFSE 232
E + D + L+GP +YE + +D + G +++ + + +T + + E
Sbjct: 245 DAHELLEDTD-LVGPVVYEED-VDELAGEYLSEYETIHMQVELTDDERPQYDEEYGIYRE 302
Query: 233 YLKKEN----------------------------SKKKQALYVMNPNKFRACEFLIRFHE 264
Y+ + ++ + L K + L++ H
Sbjct: 303 YVDTHDFDLWKAKGYQEFLAHTSYDSDGRRALIAKQRAEELARTAAKKLDTLDTLLKRHH 362
Query: 265 QQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324
R II A+N FA E + + P I T ERT+IL+ F+ + + + S+V
Sbjct: 363 DDR--TIIFTANNDFAY-EISQEFIVPCITHQTKTDERTEILERFRTG-EYSILATSQVL 418
Query: 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384
D ID+P ANV I +S A S+RQ AQRLGRILR E A Y +++T
Sbjct: 419 DEGIDVPAANVGIILSGSA-SKRQYAQRLGRILRPT----------DERQPARLYEIIAT 467
Query: 385 DTQEMFYSTKRQQ 397
DT E + S +R++
Sbjct: 468 DTMENYVSQRRRE 480
>gi|448485711|ref|ZP_21606856.1| type III restriction protein res subunit [Halorubrum arcis JCM
13916]
gi|445817410|gb|EMA67284.1| type III restriction protein res subunit [Halorubrum arcis JCM
13916]
Length = 632
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 164/373 (43%), Gaps = 39/373 (10%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
+SG+ V P G+GK++ ++ + L L + DQW + ST+ I +
Sbjct: 284 KSGVYVGPPGSGKTVAAIATIAAVGGETLILVPSRELADQWREELLDHSTVDPADIGLYH 343
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+K+ V + TY + RS +REWGL+ DE H V A ++
Sbjct: 344 GGTKD----VRPVTIATYQIAGMDRHRSL--------FDSREWGLICFDEAHHVSAPVYS 391
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT V E ++ LIG + A+W L + GF+ + +
Sbjct: 392 RTAELQSKH-RLGLSATPVSETGSEEEIYTLIGQPI-GADWDSLFEAGFVQEPEVEIRYV 449
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
P E + ++++ L NP K +L+ H R K +VF + L E
Sbjct: 450 PWRDETARNEYAAADGRERRRLAAENPAKVEEIRYLLAAH---RDKKALVFVEYLDHGRE 506
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKC---------SRDLNTIFLSKVGDNSIDIPEAN 334
A L P I G T H ER ++ + F+ + DL+ + +S+VGD ID+P A
Sbjct: 507 IADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVGDEGIDLPNAE 566
Query: 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394
+ + S GSRRQ +QR GR +R G +A Y L + + E ++ +
Sbjct: 567 LAVVASGLGGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGSSEEEFAQR 613
Query: 395 RQQFLIDQGYSFK 407
+ + L +G +
Sbjct: 614 QMRHLGRKGVRVR 626
>gi|448439742|ref|ZP_21588154.1| type III restriction protein res subunit [Halorubrum saccharovorum
DSM 1137]
gi|445690894|gb|ELZ43097.1| type III restriction protein res subunit [Halorubrum saccharovorum
DSM 1137]
Length = 658
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/407 (26%), Positives = 175/407 (42%), Gaps = 47/407 (11%)
Query: 9 NDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68
D V+ DL +L R YQE + ARSG+ V P G+GK++ ++ +
Sbjct: 285 GDPVDIDLTTDL------RGYQETWVETFLD---ARSGVYVGPPGSGKTVAAIATIAAVG 335
Query: 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGG 128
L L + QW + STI I + KE V + TY +
Sbjct: 336 GETLILVPSRELAGQWREELLEHSTIDPADIGLYHGGRKE----IRPVTIATYQIAGMDR 391
Query: 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERI 188
R+ +R+WGL+ DE H + + ++ + L H +LGL+AT VRE
Sbjct: 392 HRAL--------FDSRKWGLICFDEAHHISSPVYSRTAELQTKH-RLGLSATPVRETGSE 442
Query: 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248
++ LIG + A+W +L + GF+ + + P E + ++++ L
Sbjct: 443 EEIYTLIG-RPIGADWDELFEAGFVQEPEVEIRYVPWRDEMARNEYASADGRERRRLAAE 501
Query: 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQA 308
NP K +L+ H R K +VF + L A L P I G T H ER ++ +
Sbjct: 502 NPAKIEEVRYLLAAH---RDKKALVFIEYLDQGEAIADALGVPFISGETPHRERAELFRR 558
Query: 309 FKCS--------RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360
F+ D++ + +S+VGD ID+P A + I S GSRRQ +QR GR +R
Sbjct: 559 FRDDGGESDSDRDDVDALVVSRVGDEGIDLPNAELAIVASGLGGSRRQGSQRAGRTMRPA 618
Query: 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407
G +A Y L + + E ++ ++ + L +G +
Sbjct: 619 G-------------SALVYVLATRGSSEEEFAQRQMRHLARKGIRVR 652
>gi|397652449|ref|YP_006493030.1| DNA repair helicase [Pyrococcus furiosus COM1]
gi|393190040|gb|AFN04738.1| DNA repair helicase [Pyrococcus furiosus COM1]
Length = 447
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 123/422 (29%), Positives = 197/422 (46%), Gaps = 71/422 (16%)
Query: 10 DNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69
DN+ P +++ + R YQ +++ K GR GIIVLP GAGK++V + R+
Sbjct: 59 DNIIPSPIYDVEFDFELRDYQREAVKKFMRVGR---GIIVLPTGAGKTIVALEIIRRLSV 115
Query: 70 SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGK 129
S L + ++QW + ++ +I F+ KE + VTTY+
Sbjct: 116 STLVVVPTLALLEQWKERLSIFG-----EIGEFSGRKKEL----KPITVTTYD------- 159
Query: 130 RSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERIT 189
S I E+ ++ L+ DE H +P+ +R + ++ + +LGLTA R D
Sbjct: 160 ----SAYINAELLGDKFLFLVFDECHHLPSEAYRNIAQMSIAPYRLGLTAFPERADNLHE 215
Query: 190 DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTK----------EFFSEYLKKENS 239
LIG +YE +LV G ++AN + + P+T+ E F Y++K
Sbjct: 216 LFPELIGGIIYEKRPSELV-GKYLANYEVVRIHVPLTREEREEYRKYYERFKRYVEKRGI 274
Query: 240 K-------KKQALYVMNPNK-FRACEFL-----IRFH------------EQQRGDKIIVF 274
+ ++ L N N+ F+A L I F+ E+ RG+KII+F
Sbjct: 275 QFTSLKDFQRIVLSTANDNEAFKALRALEQARKIAFNSTKKLEKLREILERHRGEKIIIF 334
Query: 275 ADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN 334
+ + + K P I T+ ER++IL+ F+ + I S+V D ID+P+A+
Sbjct: 335 TRHNDLVYLISRKFLIPAITHKTNKEERSEILRKFRKG-EYKAIVSSQVLDEGIDVPDAS 393
Query: 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394
V + IS GS R+ QRLGRILR A GKE+ A Y L+S+ T E+ S +
Sbjct: 394 VGVIISG-TGSSREFIQRLGRILRP--------APGKEK--AILYELISSGTSEVRISKR 442
Query: 395 RQ 396
R+
Sbjct: 443 RR 444
>gi|322371366|ref|ZP_08045916.1| DNA repair helicase Rad25 [Haladaptatus paucihalophilus DX253]
gi|320549034|gb|EFW90698.1| DNA repair helicase Rad25 [Haladaptatus paucihalophilus DX253]
Length = 546
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/304 (28%), Positives = 140/304 (46%), Gaps = 18/304 (5%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
+SG++V P G+GK++ + + L L QW + +++ +Q+ +
Sbjct: 261 KSGVLVGPPGSGKTVAAMGVLEAVSGESLILVPGRELAGQWRDELLASTSLTPEQVGEYH 320
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
K V + TY R + R WGL++ DE +P+ +FR
Sbjct: 321 GGEK----NVRPVTIATYQTAGMDRHR--------QLFDQRRWGLIVYDECQHIPSRVFR 368
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT VRED++ D+ LIGP + +W L + GF+A + +
Sbjct: 369 RSADLQSKH-RLGLSATPVREDDKEKDIFTLIGPPIG-TDWDALFEAGFVAEPEVEIRYV 426
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
+E + + + K+ + NP K FL+ H K +VF + L
Sbjct: 427 GWDEETYHGEYANADGRGKRRIAATNPAKLDEIRFLLAEHPTS---KALVFVEYLEQGDR 483
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA 343
A L P + G H ER + LQAF+ R+ +T+ +S+VGD ID+P+A + I S
Sbjct: 484 IAEALDVPFLSGQMRHAERERHLQAFRDGRE-DTLVISRVGDEGIDLPDAEIAIVASGLG 542
Query: 344 GSRR 347
GSRR
Sbjct: 543 GSRR 546
>gi|448519873|ref|ZP_21618080.1| type III restriction protein res subunit [Halorubrum distributum
JCM 10118]
gi|445703437|gb|ELZ55367.1| type III restriction protein res subunit [Halorubrum distributum
JCM 10118]
Length = 642
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 163/373 (43%), Gaps = 39/373 (10%)
Query: 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103
+SG+ V P G+GK++ ++ + L L + DQW + ST+ I +
Sbjct: 294 KSGVYVGPPGSGKTVAAIATIAAVGGETLILVPSRELADQWREELLDHSTVDPADIGLYH 353
Query: 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163
+K+ V + TY + RS +REWGL+ DE H V A ++
Sbjct: 354 GGTKD----VRPVTIATYQIAGMDRHRSL--------FDSREWGLICFDEAHHVSAPVYS 401
Query: 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC 223
+ L H +LGL+AT V E ++ LIG + A+W L + GF+ + +
Sbjct: 402 RTAELQSKH-RLGLSATPVSETGSEEEIYTLIGQPIG-ADWDSLFEAGFVQEPEVEIRYV 459
Query: 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283
P E + ++ + L NP K +L+ H R K +VF + L E
Sbjct: 460 PWRDETARNEYAAADGREHRRLAAENPAKVEEIRYLLAAH---RDKKALVFVEYLDHGRE 516
Query: 284 YAMKLRKPMIYGATSHVERTKILQAFKC---------SRDLNTIFLSKVGDNSIDIPEAN 334
A L P I G T H ER ++ + F+ + DL+ + +S+VGD ID+P A
Sbjct: 517 IADALDAPFISGETPHRERAELFRRFRAADVDAEDTETDDLDVLVVSRVGDEGIDLPNAE 576
Query: 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394
+ + S GSRRQ +QR GR +R G +A Y L + + E ++ +
Sbjct: 577 LAVVASGLGGSRRQGSQRAGRTMRPTG-------------SALVYVLATRGSSEEEFAQR 623
Query: 395 RQQFLIDQGYSFK 407
+ + L +G +
Sbjct: 624 QMRHLGRKGVRVR 636
>gi|380478617|emb|CCF43492.1| DNA repair helicase RAD25 [Colletotrichum higginsianum]
Length = 439
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 85/125 (68%), Gaps = 15/125 (12%)
Query: 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVG 60
+LEEYDFR D NP+L ++L+P RPYQEKSLSKMFGNGRA+SG+IVLPCGAGK+LVG
Sbjct: 311 VLEEYDFRRDEANPNLEIDLRPGTLIRPYQEKSLSKMFGNGRAKSGLIVLPCGAGKTLVG 370
Query: 61 VSAACRIKKSCLCLATN---------------AVSVDQWAFQFKLWSTIQDDQICRFTSD 105
++AAC +KK + L T+ ++SV QW +F WS I+ + I FTSD
Sbjct: 371 ITAACTVKKGVIVLCTSSMSVVQWRNEFLKWXSMSVVQWRNEFLKWSNIKPEDIEAFTSD 430
Query: 106 SKERF 110
++ +
Sbjct: 431 NQGKI 435
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,899,027,398
Number of Sequences: 23463169
Number of extensions: 324763597
Number of successful extensions: 759622
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 874
Number of HSP's that attempted gapping in prelim test: 752261
Number of HSP's gapped (non-prelim): 2684
length of query: 516
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 369
effective length of database: 8,910,109,524
effective search space: 3287830414356
effective search space used: 3287830414356
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)