Query 010184
Match_columns 516
No_of_seqs 380 out of 2592
Neff 8.8
Searched_HMMs 46136
Date Thu Mar 28 22:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010184.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010184hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1123 RNA polymerase II tran 100.0 5E-125 1E-129 920.8 34.1 487 1-500 278-764 (776)
2 TIGR00603 rad25 DNA repair hel 100.0 1.6E-96 3E-101 784.0 49.8 491 1-502 231-732 (732)
3 COG1061 SSL2 DNA or RNA helica 100.0 4E-53 8.7E-58 440.1 37.1 368 20-411 31-420 (442)
4 KOG0384 Chromodomain-helicase 100.0 1.7E-50 3.6E-55 432.3 25.5 417 21-473 366-895 (1373)
5 KOG0385 Chromatin remodeling c 100.0 2.8E-49 6E-54 405.5 29.0 350 23-400 165-614 (971)
6 PLN03142 Probable chromatin-re 100.0 2.7E-46 5.9E-51 413.1 34.1 349 24-400 168-614 (1033)
7 PHA02558 uvsW UvsW helicase; P 100.0 7.7E-45 1.7E-49 385.3 39.2 358 23-410 112-496 (501)
8 KOG0389 SNF2 family DNA-depend 100.0 2E-44 4.2E-49 371.2 30.1 363 12-400 386-903 (941)
9 KOG0387 Transcription-coupled 100.0 2.4E-42 5.2E-47 356.4 27.6 350 24-400 204-675 (923)
10 KOG0392 SNF2 family DNA-depend 100.0 4.3E-42 9.4E-47 366.3 23.3 355 14-394 964-1463(1549)
11 KOG0386 Chromatin remodeling c 100.0 8.6E-40 1.9E-44 344.3 22.6 389 23-446 392-890 (1157)
12 COG1111 MPH1 ERCC4-like helica 100.0 4.3E-38 9.2E-43 312.8 32.1 342 21-392 11-488 (542)
13 PRK04914 ATP-dependent helicas 100.0 7.4E-38 1.6E-42 345.3 35.8 348 21-397 148-617 (956)
14 KOG0390 DNA repair protein, SN 100.0 3.4E-36 7.3E-41 319.0 32.3 364 21-410 234-729 (776)
15 KOG0330 ATP-dependent RNA heli 100.0 5.1E-37 1.1E-41 294.6 21.0 317 24-399 82-419 (476)
16 PTZ00110 helicase; Provisional 100.0 1.1E-36 2.3E-41 325.4 25.5 320 24-401 151-498 (545)
17 KOG0388 SNF2 family DNA-depend 100.0 2E-36 4.3E-41 307.6 22.2 345 24-397 566-1166(1185)
18 PRK11192 ATP-dependent RNA hel 100.0 3.7E-36 8.1E-41 315.3 24.7 293 24-361 22-341 (434)
19 PRK04837 ATP-dependent RNA hel 100.0 1.3E-36 2.9E-41 317.3 20.0 293 24-361 29-351 (423)
20 PRK10590 ATP-dependent RNA hel 100.0 6.7E-36 1.4E-40 314.3 25.2 292 24-361 22-341 (456)
21 PRK13766 Hef nuclease; Provisi 100.0 9.2E-35 2E-39 325.4 35.6 342 22-391 12-485 (773)
22 PRK01297 ATP-dependent RNA hel 100.0 2.6E-35 5.7E-40 311.8 27.4 292 24-361 108-431 (475)
23 PLN00206 DEAD-box ATP-dependen 100.0 3.4E-35 7.4E-40 312.8 28.3 294 24-361 142-464 (518)
24 PRK11776 ATP-dependent RNA hel 100.0 2E-35 4.2E-40 311.8 24.0 291 24-361 25-338 (460)
25 KOG0391 SNF2 family DNA-depend 100.0 1.2E-35 2.7E-40 314.0 22.1 134 249-395 1258-1397(1958)
26 TIGR00614 recQ_fam ATP-depende 100.0 6.2E-35 1.4E-39 307.9 27.6 286 24-361 10-322 (470)
27 KOG0331 ATP-dependent RNA heli 100.0 3E-35 6.6E-40 300.0 22.5 298 24-361 112-437 (519)
28 PRK04537 ATP-dependent RNA hel 100.0 3.3E-35 7.2E-40 315.0 23.7 293 24-361 30-353 (572)
29 KOG1000 Chromatin remodeling p 100.0 6.4E-34 1.4E-38 280.1 26.7 351 24-402 197-620 (689)
30 PRK11448 hsdR type I restricti 100.0 7E-34 1.5E-38 320.5 28.2 325 23-361 411-802 (1123)
31 PTZ00424 helicase 45; Provisio 100.0 2.8E-34 6.1E-39 298.4 22.7 293 24-361 49-363 (401)
32 PRK11634 ATP-dependent RNA hel 100.0 3.2E-34 7E-39 309.1 23.2 292 24-361 27-341 (629)
33 PRK11057 ATP-dependent DNA hel 100.0 1.3E-33 2.9E-38 305.5 27.4 282 25-361 25-332 (607)
34 TIGR03817 DECH_helic helicase/ 100.0 1.1E-32 2.4E-37 302.7 32.1 333 24-399 35-400 (742)
35 KOG4439 RNA polymerase II tran 100.0 6.5E-33 1.4E-37 282.8 24.3 366 22-400 322-873 (901)
36 TIGR00580 mfd transcription-re 100.0 1.3E-32 2.7E-37 305.2 28.5 317 21-401 447-786 (926)
37 COG0513 SrmB Superfamily II DN 100.0 3.9E-33 8.5E-38 295.3 22.2 293 24-361 50-369 (513)
38 TIGR01389 recQ ATP-dependent D 100.0 2E-32 4.4E-37 297.0 26.9 281 25-361 13-320 (591)
39 PRK10917 ATP-dependent DNA hel 100.0 2.1E-32 4.5E-37 299.4 27.1 291 22-361 258-578 (681)
40 PRK02362 ski2-like helicase; P 100.0 1.8E-32 3.9E-37 303.8 26.2 300 24-361 22-384 (737)
41 TIGR00643 recG ATP-dependent D 100.0 2E-32 4.3E-37 297.6 25.8 290 23-361 233-555 (630)
42 PRK13767 ATP-dependent helicas 100.0 1.2E-31 2.6E-36 300.3 31.3 304 24-360 31-385 (876)
43 KOG1015 Transcription regulato 100.0 1.4E-32 3E-37 286.6 21.5 370 23-410 666-1299(1567)
44 KOG0345 ATP-dependent RNA heli 100.0 1.4E-32 2.9E-37 269.8 20.0 293 25-361 28-353 (567)
45 PLN03137 ATP-dependent DNA hel 100.0 5.4E-32 1.2E-36 296.3 26.2 289 24-361 459-776 (1195)
46 PRK10689 transcription-repair 100.0 1.6E-31 3.5E-36 302.4 28.2 319 18-400 593-934 (1147)
47 KOG1002 Nucleotide excision re 100.0 1.8E-31 3.9E-36 262.6 21.6 358 24-397 183-761 (791)
48 KOG0343 RNA Helicase [RNA proc 100.0 2.5E-32 5.3E-37 272.1 15.1 304 24-383 90-422 (758)
49 KOG0354 DEAD-box like helicase 100.0 3.2E-30 7E-35 270.8 29.7 323 19-360 56-518 (746)
50 PRK00254 ski2-like helicase; P 100.0 1.3E-30 2.8E-35 288.4 27.7 297 24-361 22-375 (720)
51 KOG0340 ATP-dependent RNA heli 100.0 1.3E-30 2.8E-35 247.9 22.8 298 24-361 28-350 (442)
52 KOG0350 DEAD-box ATP-dependent 100.0 2.7E-31 5.7E-36 262.3 18.6 327 23-386 157-541 (620)
53 KOG0342 ATP-dependent RNA heli 100.0 2E-31 4.4E-36 263.3 17.7 293 24-361 103-426 (543)
54 PRK01172 ski2-like helicase; P 100.0 3.6E-30 7.7E-35 283.5 28.0 296 22-361 19-365 (674)
55 KOG0333 U5 snRNP-like RNA heli 100.0 1.2E-30 2.5E-35 259.0 21.6 310 24-392 266-631 (673)
56 COG4096 HsdR Type I site-speci 100.0 6.7E-31 1.4E-35 275.2 18.7 345 3-361 142-527 (875)
57 KOG0338 ATP-dependent RNA heli 100.0 1.6E-30 3.4E-35 257.2 18.5 296 24-361 202-522 (691)
58 KOG0348 ATP-dependent RNA heli 100.0 7.8E-31 1.7E-35 260.7 14.8 329 25-383 159-554 (708)
59 KOG0328 Predicted ATP-dependen 100.0 7.3E-30 1.6E-34 235.7 19.2 305 25-387 49-375 (400)
60 TIGR00348 hsdR type I site-spe 100.0 4.6E-29 1E-33 271.9 27.0 340 23-383 236-649 (667)
61 COG1201 Lhr Lhr-like helicases 100.0 6E-29 1.3E-33 267.4 25.4 299 24-360 21-349 (814)
62 KOG0347 RNA helicase [RNA proc 100.0 2.1E-30 4.5E-35 258.4 12.8 313 25-361 203-559 (731)
63 TIGR02621 cas3_GSU0051 CRISPR- 100.0 4.4E-28 9.6E-33 262.1 27.1 301 23-361 13-379 (844)
64 TIGR01587 cas3_core CRISPR-ass 100.0 8.5E-28 1.8E-32 246.0 27.0 292 46-385 2-338 (358)
65 KOG0336 ATP-dependent RNA heli 100.0 3.2E-29 7E-34 241.8 15.0 294 25-361 242-561 (629)
66 KOG0335 ATP-dependent RNA heli 100.0 9.4E-29 2E-33 248.4 16.1 300 20-361 91-433 (482)
67 COG1204 Superfamily II helicas 100.0 5E-28 1.1E-32 263.5 23.1 301 25-361 31-395 (766)
68 KOG0326 ATP-dependent RNA heli 100.0 2.1E-28 4.6E-33 229.5 14.0 291 25-361 107-418 (459)
69 COG1200 RecG RecG-like helicas 100.0 4.3E-27 9.3E-32 244.0 24.2 353 23-439 260-654 (677)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 5.8E-27 1.3E-31 238.3 24.7 292 29-357 1-357 (357)
71 COG0514 RecQ Superfamily II DN 100.0 1.4E-26 3E-31 240.9 27.3 287 25-361 17-326 (590)
72 COG0553 HepA Superfamily II DN 100.0 9.8E-27 2.1E-31 265.0 27.2 353 23-398 336-835 (866)
73 PRK09751 putative ATP-dependen 100.0 4.8E-27 1E-31 267.6 23.9 289 48-360 1-372 (1490)
74 COG1202 Superfamily II helicas 99.9 1.9E-26 4.1E-31 231.3 23.5 349 23-438 214-598 (830)
75 COG1197 Mfd Transcription-repa 99.9 1.1E-25 2.5E-30 245.4 29.9 332 17-411 586-942 (1139)
76 KOG0341 DEAD-box protein abstr 99.9 1.1E-27 2.4E-32 229.8 10.6 307 24-389 191-532 (610)
77 KOG0339 ATP-dependent RNA heli 99.9 2.5E-26 5.4E-31 227.3 16.6 307 24-388 244-578 (731)
78 COG1205 Distinct helicase fami 99.9 3E-25 6.6E-30 245.1 26.7 332 25-400 70-437 (851)
79 PHA02653 RNA helicase NPH-II; 99.9 9.6E-25 2.1E-29 234.9 27.9 305 24-387 159-516 (675)
80 KOG4284 DEAD box protein [Tran 99.9 2.8E-26 6.1E-31 232.4 14.8 299 25-361 47-368 (980)
81 PRK09401 reverse gyrase; Revie 99.9 2.8E-25 6.1E-30 252.4 22.5 282 23-360 78-432 (1176)
82 KOG0344 ATP-dependent RNA heli 99.9 8.5E-26 1.8E-30 228.6 16.0 304 25-380 158-493 (593)
83 TIGR03714 secA2 accessory Sec 99.9 1.2E-24 2.5E-29 233.5 24.5 322 24-361 67-526 (762)
84 KOG0332 ATP-dependent RNA heli 99.9 1.4E-24 3.1E-29 207.9 20.7 295 25-361 112-432 (477)
85 KOG0346 RNA helicase [RNA proc 99.9 1.2E-25 2.6E-30 219.3 13.1 293 25-361 41-399 (569)
86 TIGR01970 DEAH_box_HrpB ATP-de 99.9 8.1E-24 1.8E-28 232.9 28.1 282 44-385 18-336 (819)
87 PRK05580 primosome assembly pr 99.9 5E-24 1.1E-28 232.6 24.6 295 22-360 141-537 (679)
88 COG4889 Predicted helicase [Ge 99.9 5.8E-25 1.3E-29 228.8 16.2 350 3-364 136-577 (1518)
89 COG4098 comFA Superfamily II D 99.9 5.5E-23 1.2E-27 195.4 27.7 290 20-361 92-403 (441)
90 PRK11664 ATP-dependent RNA hel 99.9 1.2E-23 2.7E-28 232.0 26.7 283 44-386 21-340 (812)
91 KOG0952 DNA/RNA helicase MER3/ 99.9 7.3E-25 1.6E-29 233.1 15.9 324 25-392 110-498 (1230)
92 KOG0337 ATP-dependent RNA heli 99.9 7.2E-25 1.6E-29 212.9 12.3 304 24-385 42-368 (529)
93 PRK09200 preprotein translocas 99.9 1.4E-23 2.9E-28 227.3 22.6 320 25-361 78-530 (790)
94 TIGR00595 priA primosomal prot 99.9 1.1E-23 2.4E-28 222.2 21.4 267 47-360 1-369 (505)
95 TIGR00963 secA preprotein tran 99.9 7.9E-24 1.7E-28 225.7 18.2 327 25-361 54-506 (745)
96 PRK12898 secA preprotein trans 99.9 3.3E-23 7.2E-28 219.8 22.4 323 23-361 101-575 (656)
97 KOG1016 Predicted DNA helicase 99.9 5.7E-24 1.2E-28 218.7 15.6 389 24-436 253-891 (1387)
98 KOG0334 RNA helicase [RNA proc 99.9 5.3E-24 1.1E-28 228.4 15.7 296 25-361 387-709 (997)
99 TIGR01054 rgy reverse gyrase. 99.9 1.7E-22 3.6E-27 230.2 22.2 264 23-342 76-408 (1171)
100 PRK09694 helicase Cas3; Provis 99.9 9.2E-22 2E-26 216.8 26.5 310 23-361 284-664 (878)
101 PRK14701 reverse gyrase; Provi 99.9 1.5E-22 3.2E-27 234.9 20.0 283 23-361 77-445 (1638)
102 KOG0327 Translation initiation 99.9 5.6E-22 1.2E-26 191.8 14.7 290 25-361 48-359 (397)
103 COG0556 UvrB Helicase subunit 99.9 1.2E-20 2.6E-25 189.0 23.9 94 266-360 444-546 (663)
104 KOG0351 ATP-dependent DNA heli 99.9 1.7E-21 3.8E-26 214.1 18.5 301 24-382 263-592 (941)
105 PRK11131 ATP-dependent RNA hel 99.9 2E-20 4.4E-25 210.3 27.1 300 19-385 68-411 (1294)
106 KOG0947 Cytoplasmic exosomal R 99.9 9.3E-22 2E-26 207.4 14.2 317 20-361 292-710 (1248)
107 TIGR01967 DEAH_box_HrpA ATP-de 99.9 2E-20 4.3E-25 211.1 25.6 291 24-361 66-394 (1283)
108 KOG0352 ATP-dependent DNA heli 99.9 5.8E-21 1.3E-25 185.9 18.3 314 27-387 22-367 (641)
109 KOG1001 Helicase-like transcri 99.9 3.1E-21 6.7E-26 206.5 15.4 344 30-399 135-664 (674)
110 TIGR00631 uvrb excinuclease AB 99.9 3.5E-19 7.6E-24 192.6 30.1 94 266-360 440-542 (655)
111 COG4581 Superfamily II RNA hel 99.9 2.1E-20 4.5E-25 204.5 19.3 320 17-361 111-524 (1041)
112 PF04851 ResIII: Type III rest 99.8 1.1E-20 2.4E-25 174.1 13.7 158 24-183 2-184 (184)
113 KOG0948 Nuclear exosomal RNA h 99.8 8.5E-21 1.8E-25 195.7 13.9 327 23-384 127-538 (1041)
114 KOG0951 RNA helicase BRR2, DEA 99.8 7.6E-20 1.6E-24 197.4 21.5 304 24-361 308-689 (1674)
115 PF00176 SNF2_N: SNF2 family N 99.8 6.5E-20 1.4E-24 182.7 16.2 198 29-234 1-258 (299)
116 KOG0353 ATP-dependent DNA heli 99.8 1.9E-19 4.2E-24 172.8 18.5 280 25-351 94-403 (695)
117 PRK13104 secA preprotein trans 99.8 6.7E-19 1.4E-23 190.7 21.4 115 251-381 428-586 (896)
118 PRK12906 secA preprotein trans 99.8 3.8E-19 8.3E-24 191.6 19.5 321 24-361 79-542 (796)
119 PRK12904 preprotein translocas 99.8 1.3E-18 2.8E-23 188.4 21.0 330 24-381 80-572 (830)
120 COG1203 CRISPR-associated heli 99.8 7.3E-19 1.6E-23 194.0 18.7 319 25-388 195-555 (733)
121 PRK05298 excinuclease ABC subu 99.8 1.1E-16 2.4E-21 174.4 31.3 94 266-360 444-546 (652)
122 KOG0950 DNA polymerase theta/e 99.8 2.5E-18 5.3E-23 183.0 17.3 310 24-361 222-598 (1008)
123 PRK13107 preprotein translocas 99.7 1.7E-16 3.6E-21 171.7 21.8 116 251-382 433-591 (908)
124 COG1198 PriA Primosomal protei 99.7 2.9E-16 6.3E-21 168.7 23.1 310 23-360 196-591 (730)
125 cd00268 DEADc DEAD-box helicas 99.7 3.1E-17 6.8E-22 154.0 13.3 149 24-183 20-186 (203)
126 KOG0329 ATP-dependent RNA heli 99.7 6.4E-17 1.4E-21 148.2 14.0 262 25-361 64-344 (387)
127 COG0610 Type I site-specific r 99.7 4.6E-16 9.9E-21 175.1 23.6 328 26-362 249-639 (962)
128 PF00270 DEAD: DEAD/DEAH box h 99.7 1E-16 2.2E-21 145.8 13.2 145 27-182 1-163 (169)
129 KOG0949 Predicted helicase, DE 99.7 3.1E-15 6.7E-20 158.9 22.4 151 24-183 510-673 (1330)
130 KOG0383 Predicted helicase [Ge 99.7 2.2E-17 4.8E-22 174.8 4.7 289 23-327 293-696 (696)
131 cd00046 DEXDc DEAD-like helica 99.7 4.4E-16 9.5E-21 136.1 11.1 128 45-181 2-144 (144)
132 smart00487 DEXDc DEAD-like hel 99.7 1.5E-15 3.2E-20 140.9 15.2 152 23-184 6-173 (201)
133 PRK12899 secA preprotein trans 99.7 3.2E-14 6.9E-19 154.5 27.4 131 24-158 91-228 (970)
134 TIGR01407 dinG_rel DnaQ family 99.7 2.1E-14 4.5E-19 161.9 26.6 103 255-360 662-802 (850)
135 PRK12900 secA preprotein trans 99.6 1.1E-14 2.3E-19 158.5 21.2 106 251-361 582-700 (1025)
136 cd00079 HELICc Helicase superf 99.6 1.9E-15 4.2E-20 131.0 11.7 107 251-360 12-123 (131)
137 COG1643 HrpA HrpA-like helicas 99.6 6.5E-14 1.4E-18 153.0 24.5 289 26-362 51-378 (845)
138 KOG0922 DEAH-box RNA helicase 99.6 1.3E-13 2.8E-18 142.9 23.7 280 45-387 68-392 (674)
139 KOG0349 Putative DEAD-box RNA 99.6 2.3E-15 5E-20 147.2 10.1 273 70-361 288-604 (725)
140 PRK12326 preprotein translocas 99.6 6.3E-14 1.4E-18 148.6 20.8 129 24-158 77-211 (764)
141 COG1110 Reverse gyrase [DNA re 99.6 1.3E-13 2.8E-18 148.2 22.1 265 21-342 78-416 (1187)
142 PRK13103 secA preprotein trans 99.6 2.5E-13 5.4E-18 147.4 20.4 128 25-158 82-215 (913)
143 PF00271 Helicase_C: Helicase 99.5 7.2E-15 1.6E-19 115.6 6.0 70 289-360 9-78 (78)
144 PRK07246 bifunctional ATP-depe 99.5 9.1E-12 2E-16 139.0 27.6 66 22-89 242-313 (820)
145 PRK12903 secA preprotein trans 99.5 1.2E-12 2.7E-17 140.7 17.6 117 250-382 409-539 (925)
146 TIGR02562 cas3_yersinia CRISPR 99.5 7.8E-12 1.7E-16 137.1 23.8 334 24-380 407-893 (1110)
147 KOG0924 mRNA splicing factor A 99.5 1.4E-12 3.1E-17 134.3 16.7 284 45-391 373-703 (1042)
148 PRK15483 type III restriction- 99.5 3.7E-11 8.1E-16 132.2 28.1 170 45-218 61-278 (986)
149 KOG0920 ATP-dependent RNA heli 99.4 5.4E-12 1.2E-16 137.7 20.3 315 24-388 172-547 (924)
150 KOG0953 Mitochondrial RNA heli 99.4 2.7E-12 5.9E-17 129.9 16.6 244 47-362 195-464 (700)
151 KOG0926 DEAH-box RNA helicase 99.4 2.6E-12 5.5E-17 134.6 16.8 129 44-185 272-428 (1172)
152 KOG0923 mRNA splicing factor A 99.4 2.4E-12 5.2E-17 132.4 16.4 286 25-364 265-599 (902)
153 smart00490 HELICc helicase sup 99.4 1.5E-12 3.2E-17 102.9 7.7 70 289-360 13-82 (82)
154 CHL00122 secA preprotein trans 99.4 2.4E-11 5.2E-16 131.7 18.5 126 24-158 75-209 (870)
155 PF07652 Flavi_DEAD: Flaviviru 99.3 1.4E-11 3.1E-16 105.7 10.7 127 44-185 5-140 (148)
156 PRK08074 bifunctional ATP-depe 99.3 1.1E-09 2.5E-14 124.4 26.7 104 255-360 740-881 (928)
157 PRK12902 secA preprotein trans 99.3 1.9E-10 4.2E-15 124.6 18.9 125 25-158 85-218 (939)
158 PF13872 AAA_34: P-loop contai 99.2 6.2E-10 1.3E-14 107.4 17.0 212 22-234 34-301 (303)
159 COG1199 DinG Rad3-related DNA 99.2 1.4E-09 3E-14 120.3 21.1 70 21-90 11-85 (654)
160 KOG4150 Predicted ATP-dependen 99.1 3E-10 6.5E-15 115.2 10.1 329 25-399 286-654 (1034)
161 PRK14873 primosome assembly pr 99.1 6.2E-09 1.3E-13 113.1 19.5 122 45-183 162-305 (665)
162 PRK12901 secA preprotein trans 99.1 1.5E-08 3.3E-13 111.3 21.8 110 45-158 184-303 (1112)
163 KOG0925 mRNA splicing factor A 99.1 6E-09 1.3E-13 104.4 16.4 283 27-364 49-380 (699)
164 TIGR00604 rad3 DNA repair heli 99.0 1.1E-07 2.4E-12 105.7 26.4 66 25-90 10-82 (705)
165 PF02399 Herpes_ori_bp: Origin 99.0 3.2E-08 6.9E-13 106.6 19.3 291 45-361 51-378 (824)
166 COG3421 Uncharacterized protei 98.9 1.6E-08 3.5E-13 103.8 15.2 166 48-217 2-198 (812)
167 COG3587 Restriction endonuclea 98.9 9.6E-09 2.1E-13 109.4 13.6 139 44-184 75-245 (985)
168 KOG0951 RNA helicase BRR2, DEA 98.9 8.3E-08 1.8E-12 105.8 17.4 268 44-361 1160-1486(1674)
169 KOG1513 Nuclear helicase MOP-3 98.8 8.5E-08 1.8E-12 101.1 12.8 257 20-288 259-580 (1300)
170 TIGR03117 cas_csf4 CRISPR-asso 98.6 1.3E-07 2.9E-12 101.6 10.2 86 255-343 458-561 (636)
171 KOG0298 DEAD box-containing he 98.6 6.5E-08 1.4E-12 107.0 7.6 151 44-196 375-565 (1394)
172 COG0653 SecA Preprotein transl 98.6 2.8E-07 6E-12 100.1 11.7 127 25-158 78-213 (822)
173 TIGR00596 rad1 DNA repair prot 98.6 3.5E-06 7.5E-11 93.4 19.7 65 112-184 6-75 (814)
174 PF13086 AAA_11: AAA domain; P 98.5 6.5E-07 1.4E-11 85.4 10.5 63 25-90 1-75 (236)
175 PF02562 PhoH: PhoH-like prote 98.4 1.8E-06 4E-11 80.0 9.4 143 26-187 5-161 (205)
176 PF07517 SecA_DEAD: SecA DEAD- 98.3 1.4E-06 3.1E-11 84.1 7.5 148 23-181 75-258 (266)
177 PF13604 AAA_30: AAA domain; P 98.3 7.8E-06 1.7E-10 76.1 12.1 128 25-183 1-132 (196)
178 PRK11747 dinG ATP-dependent DN 98.2 6.3E-06 1.4E-10 91.2 10.3 64 22-85 22-95 (697)
179 PRK10536 hypothetical protein; 98.1 4.5E-06 9.8E-11 79.6 6.3 147 21-186 55-217 (262)
180 KOG1802 RNA helicase nonsense 98.1 1.1E-05 2.4E-10 84.2 9.0 65 24-91 409-477 (935)
181 PF13401 AAA_22: AAA domain; P 98.0 3.9E-05 8.4E-10 66.2 8.9 111 44-182 5-126 (131)
182 KOG1803 DNA helicase [Replicat 97.9 3.8E-05 8.2E-10 80.0 8.6 65 23-89 183-250 (649)
183 PF12340 DUF3638: Protein of u 97.9 7.6E-05 1.7E-09 69.9 9.8 141 16-159 14-186 (229)
184 PF13307 Helicase_C_2: Helicas 97.9 8E-05 1.7E-09 67.5 9.7 92 266-360 7-138 (167)
185 TIGR01447 recD exodeoxyribonuc 97.9 7.8E-05 1.7E-09 80.6 11.3 141 28-183 148-297 (586)
186 smart00488 DEXDc2 DEAD-like he 97.9 4E-05 8.6E-10 75.8 8.3 68 22-91 5-84 (289)
187 smart00489 DEXDc3 DEAD-like he 97.9 4E-05 8.6E-10 75.8 8.3 68 22-91 5-84 (289)
188 TIGR01448 recD_rel helicase, p 97.9 0.00024 5.1E-09 79.0 14.9 130 22-183 320-454 (720)
189 KOG0298 DEAD box-containing he 97.9 1.4E-05 3E-10 89.2 5.1 110 266-392 1219-1333(1394)
190 PF09848 DUF2075: Uncharacteri 97.8 5.7E-05 1.2E-09 77.1 9.0 90 45-159 3-97 (352)
191 PRK10875 recD exonuclease V su 97.8 0.0001 2.3E-09 79.8 11.2 144 26-183 153-303 (615)
192 TIGR00376 DNA helicase, putati 97.7 0.00035 7.7E-09 76.5 13.5 66 24-91 156-224 (637)
193 COG2256 MGS1 ATPase related to 97.6 0.00041 9E-09 69.4 10.9 104 34-183 39-142 (436)
194 PF13871 Helicase_C_4: Helicas 97.6 0.00029 6.3E-09 68.2 9.4 88 304-404 52-147 (278)
195 PF13245 AAA_19: Part of AAA d 97.6 0.0002 4.3E-09 55.5 6.1 44 45-88 12-62 (76)
196 cd00009 AAA The AAA+ (ATPases 97.6 0.0014 3E-08 56.9 12.4 49 30-78 6-57 (151)
197 COG1875 NYN ribonuclease and A 97.4 0.00031 6.7E-09 69.3 7.0 41 147-187 353-393 (436)
198 PRK06526 transposase; Provisio 97.4 0.00086 1.9E-08 64.9 10.0 96 44-183 99-203 (254)
199 PRK04296 thymidine kinase; Pro 97.4 0.00052 1.1E-08 63.5 7.9 33 45-77 4-39 (190)
200 PRK13342 recombination factor 97.4 0.0013 2.7E-08 68.8 11.6 102 34-181 27-128 (413)
201 PF06862 DUF1253: Protein of u 97.3 0.012 2.6E-07 60.9 17.0 93 266-360 298-397 (442)
202 PRK08181 transposase; Validate 97.3 0.0029 6.2E-08 61.7 11.3 56 25-83 87-148 (269)
203 KOG1805 DNA replication helica 97.2 0.0016 3.4E-08 71.5 10.0 122 24-163 668-814 (1100)
204 PRK13341 recombination factor 97.2 0.0021 4.5E-08 71.2 11.3 39 33-71 42-80 (725)
205 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0031 6.7E-08 70.5 11.8 124 22-181 349-476 (744)
206 KOG1132 Helicase of the DEAD s 97.1 0.0023 5E-08 69.7 9.9 45 18-62 14-59 (945)
207 smart00382 AAA ATPases associa 97.1 0.0015 3.3E-08 56.0 7.2 36 44-79 3-41 (148)
208 PLN03025 replication factor C 97.1 0.004 8.7E-08 62.7 10.9 40 29-68 20-59 (319)
209 KOG0952 DNA/RNA helicase MER3/ 97.1 0.00056 1.2E-08 75.4 4.9 111 44-160 944-1061(1230)
210 PRK12723 flagellar biosynthesi 97.1 0.0065 1.4E-07 62.3 12.3 109 44-183 175-299 (388)
211 PRK13889 conjugal transfer rel 97.1 0.0032 7E-08 71.6 10.9 124 23-182 344-471 (988)
212 PF02456 Adeno_IVa2: Adenoviru 97.0 0.015 3.2E-07 56.5 13.4 104 45-154 89-205 (369)
213 PRK05707 DNA polymerase III su 97.0 0.0054 1.2E-07 61.7 10.7 43 25-67 3-46 (328)
214 PHA02544 44 clamp loader, smal 97.0 0.0096 2.1E-07 59.7 12.3 53 25-77 24-77 (316)
215 PRK12323 DNA polymerase III su 96.9 0.0057 1.2E-07 65.9 10.7 40 29-68 23-63 (700)
216 KOG2028 ATPase related to the 96.9 0.006 1.3E-07 60.4 9.3 105 34-183 153-260 (554)
217 PF05496 RuvB_N: Holliday junc 96.9 0.0051 1.1E-07 57.6 8.5 31 44-74 51-81 (233)
218 TIGR02881 spore_V_K stage V sp 96.8 0.0052 1.1E-07 60.0 8.6 23 44-66 43-65 (261)
219 PRK14956 DNA polymerase III su 96.8 0.0084 1.8E-07 62.7 10.4 39 30-68 23-65 (484)
220 PRK14958 DNA polymerase III su 96.8 0.011 2.3E-07 63.2 11.3 38 31-68 25-63 (509)
221 KOG0921 Dosage compensation co 96.8 0.013 2.7E-07 64.1 11.6 108 253-361 627-764 (1282)
222 PRK07003 DNA polymerase III su 96.8 0.01 2.2E-07 64.9 11.1 38 31-68 25-63 (830)
223 PRK14949 DNA polymerase III su 96.7 0.013 2.9E-07 65.3 11.6 36 34-69 28-64 (944)
224 PF05970 PIF1: PIF1-like helic 96.7 0.0062 1.4E-07 62.4 8.5 115 25-166 1-123 (364)
225 PRK12402 replication factor C 96.7 0.02 4.3E-07 57.9 12.1 43 26-68 19-61 (337)
226 PRK13826 Dtr system oriT relax 96.6 0.016 3.4E-07 66.6 12.2 125 22-182 378-506 (1102)
227 TIGR03015 pepcterm_ATPase puta 96.6 0.027 5.9E-07 55.0 12.4 43 26-68 24-68 (269)
228 PRK11747 dinG ATP-dependent DN 96.6 0.018 3.9E-07 64.1 12.2 101 255-360 523-662 (697)
229 PRK14960 DNA polymerase III su 96.6 0.017 3.7E-07 62.5 11.4 40 29-68 22-62 (702)
230 PF00448 SRP54: SRP54-type pro 96.6 0.031 6.6E-07 52.0 11.5 116 45-185 3-129 (196)
231 PRK14962 DNA polymerase III su 96.5 0.017 3.8E-07 61.0 10.3 41 28-68 20-61 (472)
232 PHA02533 17 large terminase pr 96.4 0.029 6.3E-07 60.2 12.0 143 23-183 57-211 (534)
233 PF00004 AAA: ATPase family as 96.3 0.016 3.4E-07 49.6 7.8 33 47-79 2-34 (132)
234 KOG1131 RNA polymerase II tran 96.3 0.025 5.4E-07 58.4 10.0 38 25-64 16-56 (755)
235 PRK14951 DNA polymerase III su 96.3 0.023 4.9E-07 61.8 10.4 37 144-180 123-162 (618)
236 PRK07994 DNA polymerase III su 96.3 0.026 5.7E-07 61.5 10.8 37 32-68 26-63 (647)
237 PRK08727 hypothetical protein; 96.3 0.05 1.1E-06 52.1 11.7 32 44-75 42-76 (233)
238 KOG0739 AAA+-type ATPase [Post 96.3 0.029 6.2E-07 54.2 9.6 72 44-158 167-238 (439)
239 KOG0989 Replication factor C, 96.3 0.014 3E-07 56.7 7.5 41 29-69 40-83 (346)
240 PRK08691 DNA polymerase III su 96.3 0.046 1E-06 59.7 12.4 38 31-68 25-63 (709)
241 PRK08084 DNA replication initi 96.3 0.031 6.8E-07 53.5 10.0 45 31-75 33-80 (235)
242 PF05876 Terminase_GpA: Phage 96.2 0.019 4.2E-07 62.0 9.3 147 23-185 14-183 (557)
243 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.027 5.9E-07 53.4 9.4 37 31-67 26-62 (226)
244 PRK11889 flhF flagellar biosyn 96.2 0.061 1.3E-06 54.8 12.0 109 44-183 242-364 (436)
245 PF13177 DNA_pol3_delta2: DNA 96.2 0.1 2.2E-06 46.9 12.3 123 34-181 9-141 (162)
246 PRK14961 DNA polymerase III su 96.2 0.058 1.2E-06 55.3 12.0 40 29-68 20-63 (363)
247 smart00491 HELICc2 helicase su 96.1 0.024 5.1E-07 49.8 7.8 40 300-339 31-76 (142)
248 PRK14969 DNA polymerase III su 96.1 0.052 1.1E-06 58.4 11.9 39 30-68 24-63 (527)
249 PF00580 UvrD-helicase: UvrD/R 96.1 0.012 2.7E-07 58.5 6.8 94 26-126 1-102 (315)
250 TIGR00635 ruvB Holliday juncti 96.1 0.033 7.1E-07 55.6 9.8 28 43-70 30-57 (305)
251 PRK14964 DNA polymerase III su 96.1 0.025 5.5E-07 59.7 9.1 127 30-180 21-154 (491)
252 PRK14952 DNA polymerase III su 96.1 0.062 1.3E-06 58.2 12.2 40 29-68 20-60 (584)
253 PRK07940 DNA polymerase III su 96.1 0.053 1.1E-06 56.0 11.2 25 43-67 36-60 (394)
254 PRK06645 DNA polymerase III su 96.1 0.019 4.1E-07 61.1 8.1 39 30-68 26-68 (507)
255 smart00492 HELICc3 helicase su 96.1 0.05 1.1E-06 47.6 9.5 49 291-339 25-75 (141)
256 PRK07952 DNA replication prote 96.0 0.064 1.4E-06 51.5 10.8 94 28-163 79-180 (244)
257 PRK04195 replication factor C 96.0 0.042 9.1E-07 58.6 10.6 52 26-77 18-73 (482)
258 KOG0738 AAA+-type ATPase [Post 96.0 0.028 6.2E-07 56.2 8.3 47 44-91 246-292 (491)
259 PRK14959 DNA polymerase III su 96.0 0.051 1.1E-06 58.9 10.9 39 30-68 24-63 (624)
260 COG1484 DnaC DNA replication p 95.9 0.089 1.9E-06 51.0 11.5 48 42-89 104-153 (254)
261 TIGR02639 ClpA ATP-dependent C 95.9 0.047 1E-06 61.3 10.8 32 36-67 196-227 (731)
262 cd01124 KaiC KaiC is a circadi 95.9 0.049 1.1E-06 49.8 9.3 45 46-91 2-49 (187)
263 PHA03333 putative ATPase subun 95.9 0.074 1.6E-06 57.5 11.4 149 26-187 170-337 (752)
264 PRK14963 DNA polymerase III su 95.8 0.062 1.3E-06 57.4 10.8 39 30-68 19-61 (504)
265 PRK05896 DNA polymerase III su 95.8 0.035 7.6E-07 59.8 9.0 41 28-68 22-63 (605)
266 TIGR03877 thermo_KaiC_1 KaiC d 95.8 0.087 1.9E-06 50.5 10.9 60 31-91 7-71 (237)
267 PF01443 Viral_helicase1: Vira 95.8 0.02 4.3E-07 54.6 6.4 99 46-183 1-99 (234)
268 COG1222 RPT1 ATP-dependent 26S 95.8 0.026 5.6E-07 56.0 7.0 41 41-82 183-223 (406)
269 TIGR03117 cas_csf4 CRISPR-asso 95.8 0.1 2.2E-06 56.9 12.3 63 30-92 2-70 (636)
270 PRK09111 DNA polymerase III su 95.8 0.034 7.5E-07 60.4 8.6 40 29-68 31-71 (598)
271 PRK00080 ruvB Holliday junctio 95.8 0.065 1.4E-06 54.1 10.2 46 26-71 29-79 (328)
272 PRK14955 DNA polymerase III su 95.7 0.091 2E-06 54.6 11.4 39 31-69 25-64 (397)
273 cd01121 Sms Sms (bacterial rad 95.7 0.078 1.7E-06 54.3 10.7 99 31-158 68-171 (372)
274 PRK07764 DNA polymerase III su 95.7 0.067 1.5E-06 60.3 11.0 41 28-68 21-62 (824)
275 PRK08116 hypothetical protein; 95.7 0.13 2.8E-06 50.3 11.5 42 45-87 116-160 (268)
276 PHA02244 ATPase-like protein 95.6 0.11 2.4E-06 52.6 11.1 43 31-75 109-151 (383)
277 PRK04328 hypothetical protein; 95.6 0.12 2.6E-06 50.0 11.0 59 32-91 10-73 (249)
278 PRK06921 hypothetical protein; 95.6 0.053 1.1E-06 53.0 8.5 40 43-83 117-160 (266)
279 PRK14957 DNA polymerase III su 95.6 0.11 2.5E-06 55.7 11.7 36 33-68 27-63 (546)
280 PRK11823 DNA repair protein Ra 95.5 0.084 1.8E-06 55.6 10.3 99 31-158 66-169 (446)
281 TIGR02928 orc1/cdc6 family rep 95.5 0.16 3.5E-06 52.0 12.2 44 24-67 17-64 (365)
282 PF05621 TniB: Bacterial TniB 95.5 0.11 2.3E-06 51.1 10.1 131 24-182 36-190 (302)
283 COG0542 clpA ATP-binding subun 95.5 0.11 2.4E-06 57.4 11.3 95 44-170 522-618 (786)
284 PRK03992 proteasome-activating 95.5 0.042 9E-07 56.9 7.7 35 42-76 164-198 (389)
285 PRK12377 putative replication 95.5 0.075 1.6E-06 51.2 8.9 43 44-87 102-147 (248)
286 PRK06835 DNA replication prote 95.4 0.14 3.1E-06 51.4 11.2 59 24-83 159-225 (329)
287 TIGR02760 TraI_TIGR conjugativ 95.4 0.15 3.3E-06 62.9 13.4 136 23-181 427-566 (1960)
288 PRK14712 conjugal transfer nic 95.4 0.057 1.2E-06 64.3 9.2 127 24-182 834-968 (1623)
289 KOG0991 Replication factor C, 95.4 0.024 5.3E-07 52.9 4.9 102 39-177 44-148 (333)
290 PRK14974 cell division protein 95.4 0.21 4.5E-06 50.4 12.0 113 44-182 141-265 (336)
291 CHL00181 cbbX CbbX; Provisiona 95.4 0.074 1.6E-06 52.6 8.7 22 45-66 61-82 (287)
292 PRK06893 DNA replication initi 95.4 0.1 2.2E-06 49.8 9.4 31 45-75 41-74 (229)
293 PRK11054 helD DNA helicase IV; 95.4 0.035 7.6E-07 61.4 7.1 80 23-126 194-280 (684)
294 PRK00440 rfc replication facto 95.4 0.15 3.2E-06 51.1 11.1 41 27-67 22-62 (319)
295 PF13173 AAA_14: AAA domain 95.3 0.16 3.4E-06 43.6 9.7 32 44-75 3-36 (128)
296 PRK14965 DNA polymerase III su 95.3 0.14 2.9E-06 55.9 11.4 40 29-68 23-63 (576)
297 PRK14722 flhF flagellar biosyn 95.3 0.16 3.5E-06 51.8 11.1 113 43-184 137-260 (374)
298 PRK00149 dnaA chromosomal repl 95.3 0.14 3.1E-06 54.1 11.1 40 44-84 149-193 (450)
299 PRK00411 cdc6 cell division co 95.3 0.22 4.7E-06 51.6 12.4 44 24-67 32-79 (394)
300 TIGR01075 uvrD DNA helicase II 95.3 0.073 1.6E-06 59.8 9.3 81 25-127 4-91 (715)
301 PRK10919 ATP-dependent DNA hel 95.3 0.053 1.2E-06 60.2 8.1 64 25-93 2-72 (672)
302 PRK05642 DNA replication initi 95.2 0.14 3.1E-06 49.0 10.0 32 44-75 46-80 (234)
303 PRK13709 conjugal transfer nic 95.2 0.061 1.3E-06 64.8 8.9 126 24-181 966-1099(1747)
304 PTZ00454 26S protease regulato 95.2 0.058 1.3E-06 55.8 7.8 35 42-76 178-212 (398)
305 COG1474 CDC6 Cdc6-related prot 95.2 0.14 3.1E-06 52.3 10.5 47 22-68 17-67 (366)
306 PRK11034 clpA ATP-dependent Cl 95.2 0.055 1.2E-06 60.5 8.0 92 45-169 490-581 (758)
307 cd01120 RecA-like_NTPases RecA 95.2 0.09 2E-06 46.4 8.1 34 46-79 2-38 (165)
308 PRK06871 DNA polymerase III su 95.2 0.18 3.8E-06 50.6 10.8 43 25-67 2-48 (325)
309 KOG0733 Nuclear AAA ATPase (VC 95.2 0.074 1.6E-06 56.3 8.3 36 42-77 222-257 (802)
310 PRK08769 DNA polymerase III su 95.2 0.16 3.5E-06 50.8 10.6 43 25-67 4-50 (319)
311 PRK05703 flhF flagellar biosyn 95.1 0.2 4.3E-06 52.4 11.5 111 44-183 222-344 (424)
312 PRK09112 DNA polymerase III su 95.1 0.24 5.3E-06 50.3 11.8 39 30-68 28-70 (351)
313 PRK06964 DNA polymerase III su 95.1 0.19 4.1E-06 50.8 10.9 42 26-67 2-45 (342)
314 PRK11773 uvrD DNA-dependent he 95.1 0.095 2.1E-06 58.9 9.6 81 25-127 9-96 (721)
315 PRK05563 DNA polymerase III su 95.1 0.22 4.7E-06 54.0 12.1 41 28-68 22-63 (559)
316 PTZ00112 origin recognition co 95.1 0.28 6.1E-06 54.8 12.7 44 24-67 757-805 (1164)
317 PRK14948 DNA polymerase III su 95.1 0.2 4.4E-06 54.8 11.7 35 34-68 28-63 (620)
318 COG1419 FlhF Flagellar GTP-bin 95.0 0.42 9.1E-06 48.8 13.0 114 43-185 203-327 (407)
319 PF00265 TK: Thymidine kinase; 95.0 0.05 1.1E-06 49.5 5.9 34 46-79 4-40 (176)
320 TIGR00362 DnaA chromosomal rep 95.0 0.16 3.6E-06 52.8 10.5 31 45-75 138-173 (405)
321 CHL00095 clpC Clp protease ATP 95.0 0.078 1.7E-06 60.3 8.5 41 27-67 184-224 (821)
322 PRK14953 DNA polymerase III su 95.0 0.11 2.4E-06 55.2 9.1 36 33-68 27-63 (486)
323 PRK08533 flagellar accessory p 94.8 0.15 3.2E-06 48.7 8.8 46 44-90 25-73 (230)
324 TIGR02760 TraI_TIGR conjugativ 94.8 0.15 3.2E-06 63.1 10.8 126 23-182 1017-1150(1960)
325 PRK06067 flagellar accessory p 94.8 0.21 4.5E-06 47.7 9.9 60 31-91 11-75 (234)
326 TIGR02880 cbbX_cfxQ probable R 94.7 0.1 2.2E-06 51.5 7.7 22 45-66 60-81 (284)
327 TIGR01242 26Sp45 26S proteasom 94.6 0.078 1.7E-06 54.4 6.9 33 43-75 156-188 (364)
328 PTZ00293 thymidine kinase; Pro 94.6 0.31 6.7E-06 45.5 10.0 35 45-79 6-43 (211)
329 PRK07133 DNA polymerase III su 94.6 0.33 7.2E-06 53.6 11.7 38 31-68 27-65 (725)
330 PF06745 KaiC: KaiC; InterPro 94.5 0.073 1.6E-06 50.6 5.9 58 33-91 7-70 (226)
331 TIGR01241 FtsH_fam ATP-depende 94.5 0.14 3.1E-06 54.8 8.7 34 42-75 87-120 (495)
332 TIGR00678 holB DNA polymerase 94.4 0.48 1E-05 43.5 11.0 35 34-68 4-39 (188)
333 TIGR02237 recomb_radB DNA repa 94.4 0.23 5E-06 46.5 9.0 43 36-78 3-50 (209)
334 PRK08451 DNA polymerase III su 94.4 0.51 1.1E-05 50.6 12.4 36 32-67 24-60 (535)
335 TIGR03346 chaperone_ClpB ATP-d 94.4 0.17 3.6E-06 57.9 9.4 38 30-67 178-218 (852)
336 PRK08903 DnaA regulatory inact 94.4 0.44 9.6E-06 45.2 11.0 47 29-75 27-77 (227)
337 CHL00176 ftsH cell division pr 94.4 0.19 4.2E-06 55.1 9.5 33 43-75 216-248 (638)
338 TIGR02655 circ_KaiC circadian 94.4 0.3 6.4E-06 52.2 10.8 63 28-91 246-313 (484)
339 COG0470 HolB ATPase involved i 94.4 0.29 6.4E-06 49.0 10.3 37 144-180 108-147 (325)
340 PRK06090 DNA polymerase III su 94.3 0.4 8.7E-06 48.0 10.9 44 24-67 2-49 (319)
341 PRK14950 DNA polymerase III su 94.3 0.34 7.4E-06 53.0 11.3 39 30-68 21-63 (585)
342 TIGR02012 tigrfam_recA protein 94.3 0.23 4.9E-06 49.7 9.1 53 31-83 40-98 (321)
343 TIGR01074 rep ATP-dependent DN 94.3 0.14 3.1E-06 56.9 8.6 63 26-93 2-71 (664)
344 PRK07993 DNA polymerase III su 94.3 0.29 6.2E-06 49.5 9.9 43 25-67 2-48 (334)
345 TIGR02397 dnaX_nterm DNA polym 94.3 0.44 9.6E-06 48.5 11.5 39 30-68 22-61 (355)
346 COG1223 Predicted ATPase (AAA+ 94.3 0.16 3.4E-06 48.4 7.2 40 42-82 150-189 (368)
347 TIGR01243 CDC48 AAA family ATP 94.3 0.091 2E-06 59.1 6.9 35 43-77 487-521 (733)
348 PRK10865 protein disaggregatio 94.2 0.16 3.4E-06 58.0 8.7 38 30-67 183-223 (857)
349 PRK06647 DNA polymerase III su 94.2 0.5 1.1E-05 51.2 12.0 38 31-68 25-63 (563)
350 TIGR03499 FlhF flagellar biosy 94.2 0.25 5.5E-06 48.7 9.0 32 44-75 195-231 (282)
351 PRK14954 DNA polymerase III su 94.1 0.59 1.3E-05 51.2 12.4 40 30-69 21-64 (620)
352 PRK11034 clpA ATP-dependent Cl 94.1 0.28 6E-06 55.0 10.0 26 40-65 204-229 (758)
353 COG0464 SpoVK ATPases of the A 94.1 0.11 2.4E-06 55.7 6.7 48 43-91 276-323 (494)
354 TIGR03689 pup_AAA proteasome A 94.1 0.12 2.7E-06 54.9 6.9 29 42-70 215-243 (512)
355 PRK14971 DNA polymerase III su 94.0 0.61 1.3E-05 51.2 12.4 38 31-68 26-64 (614)
356 cd00983 recA RecA is a bacter 94.0 0.19 4.1E-06 50.3 7.8 57 28-84 37-99 (325)
357 PRK09354 recA recombinase A; P 94.0 0.29 6.2E-06 49.4 9.0 53 30-82 44-102 (349)
358 PRK12724 flagellar biosynthesi 93.9 0.77 1.7E-05 47.5 12.2 109 45-185 225-348 (432)
359 KOG0734 AAA+-type ATPase conta 93.9 0.3 6.6E-06 51.1 9.1 34 42-75 336-369 (752)
360 COG1435 Tdk Thymidine kinase [ 93.9 0.54 1.2E-05 43.0 9.6 34 46-79 7-43 (201)
361 COG1219 ClpX ATP-dependent pro 93.8 0.061 1.3E-06 52.6 3.8 32 45-76 99-130 (408)
362 cd01123 Rad51_DMC1_radA Rad51_ 93.8 0.27 5.8E-06 46.9 8.3 47 32-78 6-63 (235)
363 TIGR01547 phage_term_2 phage t 93.8 0.42 9.2E-06 49.6 10.4 126 45-184 3-143 (396)
364 PRK08699 DNA polymerase III su 93.8 0.61 1.3E-05 46.9 11.1 42 26-67 2-45 (325)
365 PHA03368 DNA packaging termina 93.8 0.52 1.1E-05 51.1 10.9 127 42-182 253-391 (738)
366 PF03354 Terminase_1: Phage Te 93.8 0.25 5.5E-06 52.6 8.7 133 28-169 1-148 (477)
367 cd01393 recA_like RecA is a b 93.7 0.33 7.2E-06 45.9 8.7 48 32-79 6-64 (226)
368 PTZ00361 26 proteosome regulat 93.7 0.14 3.1E-06 53.5 6.5 35 42-76 216-250 (438)
369 TIGR00416 sms DNA repair prote 93.7 0.44 9.6E-06 50.3 10.3 99 31-158 80-183 (454)
370 KOG2340 Uncharacterized conser 93.7 1.3 2.9E-05 46.3 13.1 103 256-360 540-652 (698)
371 PF01745 IPT: Isopentenyl tran 93.7 0.068 1.5E-06 49.5 3.6 29 46-74 4-32 (233)
372 CHL00195 ycf46 Ycf46; Provisio 93.6 0.11 2.5E-06 55.0 5.7 35 42-76 258-292 (489)
373 PRK14087 dnaA chromosomal repl 93.5 0.55 1.2E-05 49.5 10.7 44 44-88 142-190 (450)
374 cd00544 CobU Adenosylcobinamid 93.5 0.74 1.6E-05 41.6 10.1 47 46-92 2-48 (169)
375 PF00308 Bac_DnaA: Bacterial d 93.5 1.4 3E-05 41.7 12.3 72 45-160 36-112 (219)
376 TIGR03345 VI_ClpV1 type VI sec 93.4 0.24 5.1E-06 56.5 8.1 93 45-169 598-692 (852)
377 TIGR00767 rho transcription te 93.3 0.18 3.9E-06 51.6 6.3 28 41-68 166-193 (415)
378 PF05127 Helicase_RecD: Helica 93.3 0.11 2.4E-06 47.1 4.3 122 47-186 1-128 (177)
379 TIGR02639 ClpA ATP-dependent C 93.3 0.2 4.3E-06 56.4 7.3 93 45-170 486-578 (731)
380 PF01695 IstB_IS21: IstB-like 93.3 0.17 3.7E-06 46.2 5.6 38 44-82 48-88 (178)
381 cd01125 repA Hexameric Replica 93.2 0.63 1.4E-05 44.6 9.7 33 45-77 3-50 (239)
382 PRK07399 DNA polymerase III su 93.1 1 2.2E-05 45.1 11.3 35 33-67 15-50 (314)
383 PRK06305 DNA polymerase III su 93.1 0.74 1.6E-05 48.6 10.8 39 30-68 22-64 (451)
384 TIGR02238 recomb_DMC1 meiotic 93.0 0.47 1E-05 47.5 8.8 48 32-79 83-141 (313)
385 TIGR02640 gas_vesic_GvpN gas v 93.0 0.24 5.2E-06 48.3 6.6 48 27-76 4-54 (262)
386 PRK14088 dnaA chromosomal repl 93.0 0.6 1.3E-05 49.1 10.0 32 44-75 131-167 (440)
387 KOG0729 26S proteasome regulat 93.0 0.4 8.6E-06 45.8 7.6 43 42-85 210-252 (435)
388 PRK07471 DNA polymerase III su 92.9 0.75 1.6E-05 47.1 10.3 39 29-67 23-65 (365)
389 PRK14970 DNA polymerase III su 92.9 1.2 2.5E-05 45.8 11.8 40 30-69 25-65 (367)
390 PRK08058 DNA polymerase III su 92.9 1.1 2.5E-05 45.1 11.5 34 34-67 18-52 (329)
391 KOG0651 26S proteasome regulat 92.9 0.19 4.2E-06 49.0 5.4 41 42-83 165-205 (388)
392 COG1444 Predicted P-loop ATPas 92.8 1.4 3.1E-05 48.6 12.7 135 26-183 212-358 (758)
393 PRK08939 primosomal protein Dn 92.8 0.77 1.7E-05 45.8 9.9 39 44-83 157-198 (306)
394 COG4626 Phage terminase-like p 92.7 0.85 1.8E-05 48.3 10.4 148 20-179 56-223 (546)
395 PRK05986 cob(I)alamin adenolsy 92.7 0.56 1.2E-05 43.1 8.0 127 44-182 23-158 (191)
396 PRK12727 flagellar biosynthesi 92.7 1.2 2.6E-05 47.4 11.5 32 44-75 351-387 (559)
397 PRK06731 flhF flagellar biosyn 92.7 1.9 4E-05 42.2 12.2 111 44-185 76-200 (270)
398 PRK12422 chromosomal replicati 92.7 0.5 1.1E-05 49.7 8.8 33 44-76 142-177 (445)
399 PRK14086 dnaA chromosomal repl 92.7 0.59 1.3E-05 50.7 9.4 41 45-86 316-361 (617)
400 PRK13833 conjugal transfer pro 92.6 0.22 4.7E-06 50.0 5.7 55 24-80 127-186 (323)
401 cd00561 CobA_CobO_BtuR ATP:cor 92.6 0.61 1.3E-05 41.6 8.0 125 46-182 5-138 (159)
402 CHL00095 clpC Clp protease ATP 92.5 0.38 8.2E-06 54.9 8.2 93 45-169 541-635 (821)
403 PRK06620 hypothetical protein; 92.4 0.65 1.4E-05 43.7 8.4 24 44-67 45-68 (214)
404 TIGR03345 VI_ClpV1 type VI sec 92.3 0.5 1.1E-05 53.9 8.8 38 30-67 192-232 (852)
405 PRK12726 flagellar biosynthesi 92.3 1.8 3.9E-05 44.2 11.7 44 43-86 206-255 (407)
406 PF06733 DEAD_2: DEAD_2; Inte 92.2 0.17 3.7E-06 46.0 4.1 41 112-160 118-160 (174)
407 COG3973 Superfamily I DNA and 92.2 0.41 8.8E-06 50.9 7.2 43 44-86 227-278 (747)
408 CHL00206 ycf2 Ycf2; Provisiona 92.2 0.46 1E-05 57.2 8.4 43 41-84 1628-1670(2281)
409 PRK04132 replication factor C 92.2 0.52 1.1E-05 53.2 8.5 90 49-182 572-670 (846)
410 KOG0737 AAA+-type ATPase [Post 92.2 0.59 1.3E-05 46.8 7.9 48 43-91 127-174 (386)
411 COG0467 RAD55 RecA-superfamily 92.1 0.37 7.9E-06 46.9 6.6 56 34-90 12-72 (260)
412 PF03237 Terminase_6: Terminas 92.1 1.7 3.6E-05 44.1 11.8 109 47-167 1-119 (384)
413 TIGR01650 PD_CobS cobaltochela 92.1 0.46 9.9E-06 47.5 7.2 56 21-78 44-99 (327)
414 PRK05564 DNA polymerase III su 92.1 2 4.4E-05 42.9 12.0 41 28-68 10-51 (313)
415 TIGR01243 CDC48 AAA family ATP 92.0 0.76 1.6E-05 51.8 9.8 33 43-75 212-244 (733)
416 TIGR02782 TrbB_P P-type conjug 92.0 0.3 6.5E-06 48.6 5.9 52 26-79 117-173 (299)
417 PF00931 NB-ARC: NB-ARC domain 92.0 1.2 2.6E-05 43.7 10.2 68 27-94 1-76 (287)
418 COG1066 Sms Predicted ATP-depe 91.9 1.3 2.8E-05 45.2 10.0 101 30-159 78-182 (456)
419 TIGR03880 KaiC_arch_3 KaiC dom 91.8 0.51 1.1E-05 44.7 7.1 58 33-91 4-66 (224)
420 COG2812 DnaX DNA polymerase II 91.7 0.34 7.4E-06 51.4 6.1 123 32-180 26-156 (515)
421 PRK04301 radA DNA repair and r 91.7 1.1 2.3E-05 45.1 9.5 48 32-79 89-147 (317)
422 PRK10865 protein disaggregatio 91.6 0.53 1.2E-05 53.8 8.1 93 45-169 600-694 (857)
423 KOG1807 Helicases [Replication 91.6 0.31 6.7E-06 52.9 5.6 64 24-90 377-449 (1025)
424 PLN03187 meiotic recombination 91.5 0.89 1.9E-05 46.0 8.7 48 32-79 113-171 (344)
425 COG3598 RepA RecA-family ATPas 91.4 1.1 2.5E-05 44.1 8.8 137 30-182 78-243 (402)
426 PRK13894 conjugal transfer ATP 91.4 0.4 8.6E-06 48.1 6.0 54 25-80 132-190 (319)
427 PRK05800 cobU adenosylcobinami 91.3 0.33 7.2E-06 43.9 4.9 47 45-91 3-49 (170)
428 TIGR01425 SRP54_euk signal rec 91.3 2.4 5.2E-05 44.1 11.7 47 44-90 101-152 (429)
429 TIGR02030 BchI-ChlI magnesium 91.2 1 2.2E-05 45.5 8.8 38 30-67 9-49 (337)
430 PF00158 Sigma54_activat: Sigm 91.1 0.79 1.7E-05 41.4 7.2 94 44-171 23-119 (168)
431 PRK09302 circadian clock prote 91.1 1.4 3.1E-05 47.3 10.4 63 28-91 14-82 (509)
432 cd01128 rho_factor Transcripti 91.1 0.53 1.1E-05 45.4 6.3 37 32-68 5-41 (249)
433 PF08423 Rad51: Rad51; InterP 91.1 0.49 1.1E-05 45.9 6.1 59 32-90 25-94 (256)
434 KOG1133 Helicase of the DEAD s 91.1 0.31 6.7E-06 52.4 5.0 44 17-62 7-53 (821)
435 TIGR02655 circ_KaiC circadian 90.9 0.59 1.3E-05 49.9 7.1 60 31-91 7-72 (484)
436 COG2804 PulE Type II secretory 90.9 0.38 8.3E-06 50.3 5.4 44 25-69 241-284 (500)
437 KOG0740 AAA+-type ATPase [Post 90.9 0.54 1.2E-05 48.5 6.4 47 43-90 186-232 (428)
438 PF04364 DNA_pol3_chi: DNA pol 90.8 2.2 4.9E-05 37.0 9.4 116 254-407 16-136 (137)
439 PRK09376 rho transcription ter 90.8 0.51 1.1E-05 48.2 6.1 36 32-67 158-193 (416)
440 PRK00771 signal recognition pa 90.8 2 4.3E-05 45.1 10.6 34 43-76 95-131 (437)
441 TIGR00595 priA primosomal prot 90.8 1.5 3.2E-05 47.0 10.0 88 250-340 8-101 (505)
442 PF07728 AAA_5: AAA domain (dy 90.7 0.3 6.4E-06 42.3 3.9 33 46-78 2-34 (139)
443 TIGR00708 cobA cob(I)alamin ad 90.6 2.1 4.5E-05 38.8 9.2 124 45-182 7-140 (173)
444 TIGR03346 chaperone_ClpB ATP-d 90.5 0.65 1.4E-05 53.2 7.4 93 45-169 597-691 (852)
445 KOG0733 Nuclear AAA ATPase (VC 90.4 1.3 2.7E-05 47.4 8.6 46 43-89 545-590 (802)
446 TIGR03881 KaiC_arch_4 KaiC dom 90.3 0.88 1.9E-05 43.1 7.2 58 32-90 7-69 (229)
447 cd01130 VirB11-like_ATPase Typ 90.3 0.85 1.9E-05 41.8 6.7 42 24-67 8-49 (186)
448 TIGR02858 spore_III_AA stage I 90.1 1.3 2.7E-05 43.4 8.0 34 34-67 102-135 (270)
449 TIGR01073 pcrA ATP-dependent D 90.1 0.76 1.7E-05 51.7 7.5 64 25-93 4-74 (726)
450 PRK05580 primosome assembly pr 90.1 2.2 4.8E-05 47.6 10.9 91 249-342 172-268 (679)
451 PRK10416 signal recognition pa 90.0 5.9 0.00013 39.7 13.0 32 44-75 115-149 (318)
452 cd01129 PulE-GspE PulE/GspE Th 90.0 0.73 1.6E-05 44.9 6.3 43 25-68 63-105 (264)
453 PRK09183 transposase/IS protei 90.0 0.58 1.3E-05 45.5 5.6 39 44-83 103-144 (259)
454 KOG0730 AAA+-type ATPase [Post 89.9 1 2.3E-05 48.4 7.6 45 41-86 466-510 (693)
455 KOG0731 AAA+-type ATPase conta 89.9 0.3 6.4E-06 53.8 3.7 35 42-76 343-377 (774)
456 PRK14723 flhF flagellar biosyn 89.8 2.6 5.7E-05 47.0 11.0 22 44-65 186-207 (767)
457 TIGR02974 phageshock_pspF psp 89.8 2.1 4.6E-05 43.1 9.7 93 44-170 23-118 (329)
458 PRK05973 replicative DNA helic 89.7 0.78 1.7E-05 43.8 6.1 46 45-91 66-114 (237)
459 COG0630 VirB11 Type IV secreto 89.7 1.5 3.3E-05 43.8 8.5 108 23-162 125-234 (312)
460 PRK10917 ATP-dependent DNA hel 89.7 1.6 3.5E-05 48.7 9.5 91 249-342 292-393 (681)
461 PRK10733 hflB ATP-dependent me 89.6 0.74 1.6E-05 50.9 6.7 35 43-77 185-219 (644)
462 KOG0745 Putative ATP-dependent 89.4 0.37 8E-06 49.2 3.7 30 45-74 228-257 (564)
463 TIGR00602 rad24 checkpoint pro 89.4 3 6.6E-05 45.8 11.0 41 27-67 89-134 (637)
464 KOG0726 26S proteasome regulat 89.3 0.45 9.7E-06 46.1 4.0 34 42-75 218-251 (440)
465 KOG2543 Origin recognition com 89.2 0.84 1.8E-05 46.0 6.0 70 20-91 4-76 (438)
466 TIGR03878 thermo_KaiC_2 KaiC d 89.2 0.75 1.6E-05 44.7 5.7 34 44-77 37-73 (259)
467 PF11496 HDA2-3: Class II hist 89.1 1.5 3.2E-05 43.5 7.7 130 247-390 92-250 (297)
468 COG1702 PhoH Phosphate starvat 89.1 0.9 2E-05 45.2 6.1 40 147-186 245-284 (348)
469 cd01394 radB RadB. The archaea 89.1 1.4 2.9E-05 41.5 7.3 46 32-77 6-56 (218)
470 PRK14873 primosome assembly pr 89.1 2.5 5.5E-05 46.7 10.3 91 249-342 170-267 (665)
471 PF13207 AAA_17: AAA domain; P 89.1 0.52 1.1E-05 39.6 4.0 26 46-71 2-27 (121)
472 PF05707 Zot: Zonular occluden 89.0 1.1 2.5E-05 41.3 6.6 18 46-63 3-20 (193)
473 PLN02165 adenylate isopentenyl 88.9 0.41 8.9E-06 47.9 3.7 31 39-69 39-69 (334)
474 PRK05728 DNA polymerase III su 88.9 7.6 0.00017 33.9 11.3 120 251-409 13-137 (142)
475 PRK12608 transcription termina 88.8 1 2.2E-05 45.9 6.5 40 28-67 118-157 (380)
476 COG1221 PspF Transcriptional r 88.7 0.87 1.9E-05 46.8 5.9 94 44-170 102-198 (403)
477 TIGR00064 ftsY signal recognit 88.7 5.6 0.00012 39.0 11.4 32 44-75 73-107 (272)
478 KOG0701 dsRNA-specific nucleas 88.6 0.31 6.6E-06 57.8 2.9 89 270-360 294-399 (1606)
479 PRK04841 transcriptional regul 88.5 4.6 9.9E-05 46.7 12.6 32 44-76 33-64 (903)
480 PRK09361 radB DNA repair and r 88.5 1.3 2.7E-05 42.0 6.7 47 31-77 9-60 (225)
481 PF06309 Torsin: Torsin; Inte 88.4 1.4 3.1E-05 37.5 6.1 45 48-92 58-113 (127)
482 cd03115 SRP The signal recogni 88.4 2.6 5.7E-05 37.9 8.5 30 46-75 3-35 (173)
483 PRK10867 signal recognition pa 88.4 2.3 4.9E-05 44.5 8.9 32 44-75 101-136 (433)
484 PRK15429 formate hydrogenlyase 88.3 3.1 6.6E-05 46.6 10.6 33 44-76 400-435 (686)
485 PF00154 RecA: recA bacterial 88.3 2.3 5E-05 42.5 8.5 58 31-88 38-101 (322)
486 TIGR01420 pilT_fam pilus retra 88.1 2.2 4.8E-05 43.3 8.5 24 44-67 123-146 (343)
487 PF06068 TIP49: TIP49 C-termin 87.9 1.2 2.7E-05 44.9 6.3 35 43-77 50-86 (398)
488 PLN03186 DNA repair protein RA 87.6 2.6 5.7E-05 42.7 8.6 48 32-79 110-168 (342)
489 COG0324 MiaA tRNA delta(2)-iso 87.6 0.56 1.2E-05 46.4 3.6 28 45-72 5-32 (308)
490 TIGR01817 nifA Nif-specific re 87.6 2.8 6.1E-05 45.4 9.4 93 44-170 220-315 (534)
491 PHA03372 DNA packaging termina 87.6 3.6 7.8E-05 44.3 9.7 123 42-181 201-337 (668)
492 COG3267 ExeA Type II secretory 87.6 5.6 0.00012 38.1 10.1 39 44-82 52-92 (269)
493 PRK14721 flhF flagellar biosyn 87.5 4.4 9.5E-05 42.2 10.3 22 44-65 192-213 (420)
494 PF11285 DUF3086: Protein of u 87.5 5.5 0.00012 37.7 9.8 112 28-159 142-260 (283)
495 PRK10436 hypothetical protein; 87.5 0.92 2E-05 47.9 5.4 44 24-68 200-243 (462)
496 TIGR02903 spore_lon_C ATP-depe 87.3 2.3 5.1E-05 46.7 8.7 24 41-64 173-196 (615)
497 PRK13851 type IV secretion sys 87.3 1.1 2.5E-05 45.3 5.8 37 44-80 163-201 (344)
498 COG0703 AroK Shikimate kinase 87.2 0.67 1.5E-05 41.7 3.6 28 44-71 3-30 (172)
499 PRK09519 recA DNA recombinatio 87.2 3.2 7E-05 46.5 9.6 52 31-82 45-102 (790)
500 PRK06995 flhF flagellar biosyn 87.1 4.9 0.00011 42.6 10.5 23 44-66 257-279 (484)
No 1
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=5.5e-125 Score=920.80 Aligned_cols=487 Identities=72% Similarity=1.150 Sum_probs=471.0
Q ss_pred CcccccCccCCCCCCccccCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhh
Q 010184 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (516)
Q Consensus 1 ~~~eydf~~~~~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L 80 (516)
||+||||+||+.||++.|+|||.+++||||++++++||+++++|+|||++|||+|||+++++++++++++|||+|.+.+.
T Consensus 278 lLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VS 357 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVS 357 (776)
T ss_pred hhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch
Q 010184 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (516)
Q Consensus 81 ~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (516)
++||+.+|..|.++.+..|++|+++.++.++.+++|+|+||+|+.+.++|+++++++|+++..++||++|+||+|.+++.
T Consensus 358 VeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~ 437 (776)
T KOG1123|consen 358 VEQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK 437 (776)
T ss_pred HHHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhH
Q 010184 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (516)
Q Consensus 161 ~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~ 240 (516)
+|++++..+.+|++||||||++|+|+++.+|++++||++|+++|++|.+.|+|++++|.+|||||+++||.+|+ +...+
T Consensus 438 MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL-~~~t~ 516 (776)
T KOG1123|consen 438 MFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYL-RENTR 516 (776)
T ss_pred HHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHH-hhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 78999
Q ss_pred HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCceEecCCCHHHHHHHHHHHhcCCCccEEEE
Q 010184 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~ 320 (516)
++.++++|||+||++|++||++|+ .+|+|+|||++++..+..+|-.|+.++|+|.+++.||++|+++|+.++.+++||.
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHH
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (516)
+++|+++||||+|+|+|++++|.+|+++++||+||++|++.+++ +++|+|||+||++||.||+|+++||+||+
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~d-------e~fnafFYSLVS~DTqEM~YStKRQ~FLi 668 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRND-------EEFNAFFYSLVSKDTQEMYYSTKRQQFLI 668 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCc-------cccceeeeeeeecchHHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred HcCCceEEEecCCCCCCCCCcccCCHHHHHHHHHHHHhcCCccccccccCCChhhhhhhhhhhcccccccccCCCCceee
Q 010184 401 DQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480 (516)
Q Consensus 401 ~~g~~~~vi~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (516)
+|||+|+||+++++|++.+++.|.+++||.+||+.||.++|.++++|+.+++ .-..+.+.|+.|+|++||||+||+||
T Consensus 669 dQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E~~~~~--~~~~~~a~r~~gslssmsGgd~m~Y~ 746 (776)
T KOG1123|consen 669 DQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELEDLEDE--SRASSKAVRSEGSLSSMSGGDDMAYM 746 (776)
T ss_pred hcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhcccccccc--ccccccceecccccccccCCCcceee
Confidence 9999999999999999999999999999999999999999999988877543 23345678999999999999999999
Q ss_pred eeecChhhHhhhhhcCCcch
Q 010184 481 EYRYDPWQKQLFKASSQIFF 500 (516)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~ 500 (516)
|++.++ ||++.+ ..||+|
T Consensus 747 ey~~~~-~k~~~~-~~~p~~ 764 (776)
T KOG1123|consen 747 EYNSSR-NKKLIK-SVHPLF 764 (776)
T ss_pred eecccc-cccccc-ccccch
Confidence 999999 887763 345554
No 2
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.6e-96 Score=783.95 Aligned_cols=491 Identities=71% Similarity=1.123 Sum_probs=452.6
Q ss_pred CcccccCccCCCCCCccccCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhh
Q 010184 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (516)
Q Consensus 1 ~~~eydf~~~~~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L 80 (516)
+++||||+++..+|++++++++.++|||||++|+++|+.++++++|+|++|||+|||++++.+++..++++|||||+++|
T Consensus 231 ~~~~~~f~~~~~~~~~~i~L~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~L 310 (732)
T TIGR00603 231 LLEEYDFRNDTVNPDLNIDLKPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVS 310 (732)
T ss_pred hhhhhhhcccccCCCCCcccccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHH
Confidence 36899999999999999999999999999999999999887778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch
Q 010184 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (516)
Q Consensus 81 ~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (516)
+.||.++|.+|+.+++..|..++|+.+..+.+..+|+|+||+++.+..+|+.....+++.+....|++||+||||+++++
T Consensus 311 v~QW~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~ 390 (732)
T TIGR00603 311 VEQWKQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA 390 (732)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH
Confidence 99999999999988888899999987776556688999999999988777777778888888889999999999999999
Q ss_pred hHHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhH
Q 010184 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (516)
Q Consensus 161 ~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~ 240 (516)
.|++++..++++++|||||||.|+|+.+.++.+++||++|+.+|.++++.|+++++.|.++||+|+++++.+|+ .....
T Consensus 391 ~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl-~~~~~ 469 (732)
T TIGR00603 391 MFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYL-RENSR 469 (732)
T ss_pred HHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHH-Hhcch
Confidence 99999999999999999999999999998999999999999999999999999999999999999999999999 55566
Q ss_pred HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCceEecCCCHHHHHHHHHHHhcCCCccEEEE
Q 010184 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~ 320 (516)
.+..++.+||+|+..|..|+++|+ .+++|+||||+++.+++.++..|+++++||++++.+|.+++++|++++.+++||+
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 677888999999999999999998 7899999999999999999999999999999999999999999998768899999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCC-ceeEEEEEEEcCCchhhhHHHHHHHHH
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKE-EYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~-~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (516)
|+++++|||+|++++||+++++++|+++++||+||++|+++++. . +++++||+||+++|.|++++.+||+||
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~-------~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD-------AEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc-------cccccceEEEEecCCchHHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999997654 3 678999999999999999999999999
Q ss_pred HHcCCceEEEecCCCCCCCCCcccCCHHHHHHHHHHHHhcCCccccccccCCChhhhh----------hhhhhhcccccc
Q 010184 400 IDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMS 469 (516)
Q Consensus 400 ~~~g~~~~vi~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 469 (516)
++|||+|++|++++++.+.+++.|+++++|.+||+++|.+.+.++++|..++|-+.+. ...++|+.|+|+
T Consensus 622 ~~qGY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (732)
T TIGR00603 622 VDQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDLDAELEVLEGEFGSRALGASRSMSSASGKAVRRGGSLS 701 (732)
T ss_pred HHCCCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCcccccchhccccchhccccccccccccccccceeccccHh
Confidence 9999999999999999988899999999999999999999988887666544322332 233689999999
Q ss_pred cccCCCCceeeeeecChhhHhhhhhcCCcchhH
Q 010184 470 AMSGAQGMVYMEYRYDPWQKQLFKASSQIFFSF 502 (516)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (516)
++|||++|+|||+++++ ||.++ +..|||||+
T Consensus 702 ~~~g~~~~~~~~~~~~~-~~~~~-~~~~~~~~~ 732 (732)
T TIGR00603 702 SLSGGDDMAYMEYRKPA-IKKSK-KEVHPLFKK 732 (732)
T ss_pred hhcCCCCceeEEeeccc-ccccc-cccCcccCC
Confidence 99999999999999998 88774 346999985
No 3
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=4e-53 Score=440.09 Aligned_cols=368 Identities=36% Similarity=0.559 Sum_probs=320.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
..+.++|||||++|++.|+.+.+ .++|++++|||+|||++++.+++..+.++|||||+++|+.||.+.+.+++..+ ..
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~~ 109 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLN-DE 109 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCc-cc
Confidence 56678999999999999998522 46999999999999999999999999999999999999999999999987654 46
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccce-EEEE
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHC-KLGL 177 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~-~l~L 177 (516)
++.++++.++... ..|.|+|++++... ..+..+...+|++||+|||||++++.++.+...+.+.+ +|||
T Consensus 110 ~g~~~~~~~~~~~--~~i~vat~qtl~~~--------~~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~~~~~~LGL 179 (442)
T COG1061 110 IGIYGGGEKELEP--AKVTVATVQTLARR--------QLLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLSAAYPRLGL 179 (442)
T ss_pred cceecCceeccCC--CcEEEEEhHHHhhh--------hhhhhhcccccCEEEEEccccCCcHHHHHHHHhhhcccceeee
Confidence 7888888765321 56999999999763 14555656789999999999999999999999999988 9999
Q ss_pred eccCCCCc-cchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH---------------
Q 010184 178 TATLVRED-ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK--------------- 241 (516)
Q Consensus 178 TATp~~~~-~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~--------------- 241 (516)
||||.|.| +.+..+..++||.+|+.++.+++..|+++++.+..++++++.+....|. ....+.
T Consensus 180 TATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 258 (442)
T COG1061 180 TATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYA-KESARFRELLRARGTLRAENE 258 (442)
T ss_pred ccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhh-hhhhhhhhhhhhhhhhhHHHH
Confidence 99999999 7888999999999999999999999999999999999999888877776 332222
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCc----eEecCCCHHHHHHHHHHHhcCCCccE
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP----MIYGATSHVERTKILQAFKCSRDLNT 317 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~----~i~g~~~~~eR~~~l~~F~~~~~~~v 317 (516)
...+...++.+...+..++..+. ++.+++||+.++.+++.++..+..+ .++|+++..+|.+++++|+.+ .+++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g-~~~~ 335 (442)
T COG1061 259 ARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTG-GIKV 335 (442)
T ss_pred HHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHHcC-CCCE
Confidence 25556677788888888888774 6889999999999999999999888 999999999999999999998 6999
Q ss_pred EEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 318 Lv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
|++++++++|+|+|+++++|+.++ ++|+..|+||+||++|..+++ +...+++|.++..++.++.+++.+..
T Consensus 336 lv~~~vl~EGvDiP~~~~~i~~~~-t~S~~~~~Q~lGR~LR~~~~k--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 336 LVTVKVLDEGVDIPDADVLIILRP-TGSRRLFIQRLGRGLRPAEGK--------EDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred EEEeeeccceecCCCCcEEEEeCC-CCcHHHHHHHhhhhccCCCCC--------CceEEEEEEeecCcccccchhhhhhh
Confidence 999999999999999999999966 789999999999999975433 34469999999999999999999998
Q ss_pred HHHHcCCceEEEec
Q 010184 398 FLIDQGYSFKVITS 411 (516)
Q Consensus 398 ~l~~~g~~~~vi~~ 411 (516)
+...+|+.......
T Consensus 407 ~~~~~g~~~~~~~~ 420 (442)
T COG1061 407 FLIRKGYTYRLLTA 420 (442)
T ss_pred hHHhccchhhhhhc
Confidence 88888887765543
No 4
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=1.7e-50 Score=432.30 Aligned_cols=417 Identities=17% Similarity=0.229 Sum_probs=318.8
Q ss_pred CCCCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh------cCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 21 KPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
+...+||+||.++++||+.. ....+|||+++||+|||++.++++.. +.+|+|||||.+. +..|.++|..|+.
T Consensus 366 ~~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst-~~~W~~ef~~w~~ 444 (1373)
T KOG0384|consen 366 KGGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLST-ITAWEREFETWTD 444 (1373)
T ss_pred cccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhh-hHHHHHHHHHHhh
Confidence 34479999999999987653 12249999999999999999988744 4589999999998 7789999999985
Q ss_pred CCCCcEEEEeCCcccc---------ccC-----CCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc
Q 010184 94 IQDDQICRFTSDSKER---------FRG-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~---------~~~-----~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (516)
+ ++.+|.|....+ ... ...+++|||+++.+. ..+|....|.++++||||+++|
T Consensus 445 m---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----------k~~L~~i~w~~~~vDeahrLkN 511 (1373)
T KOG0384|consen 445 M---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----------KAELSKIPWRYLLVDEAHRLKN 511 (1373)
T ss_pred h---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----------HhhhccCCcceeeecHHhhcCc
Confidence 4 567777764422 112 478999999999764 5778889999999999999997
Q ss_pred h--hHHHHHhhcccceEEEEeccCCCCccchh-hhHhhhCCc------------------------------cccccHHH
Q 010184 160 H--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPK------------------------------LYEANWLD 206 (516)
Q Consensus 160 ~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~------------------------------~~~~~~~~ 206 (516)
. ..-..+..++..++|++||||.++.-.+. .|..++-|. +.+....+
T Consensus 512 ~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkd 591 (1373)
T KOG0384|consen 512 DESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKD 591 (1373)
T ss_pred hHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhh
Confidence 6 34445778888999999999998764432 333333333 22222222
Q ss_pred HHhCCCcccceeEEEeccCCHHH---HHHHHHhhhh-----------------------------------------H--
Q 010184 207 LVKGGFIANVQCAEVWCPMTKEF---FSEYLKKENS-----------------------------------------K-- 240 (516)
Q Consensus 207 l~~~g~l~~~~~~~v~~~~~~~~---~~~~l~~~~~-----------------------------------------~-- 240 (516)
.. .-+++.....+.+.|+.-+ |+..|.++.. +
T Consensus 592 ve--kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~ 669 (1373)
T KOG0384|consen 592 VE--KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDK 669 (1373)
T ss_pred hc--cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhc
Confidence 22 3455666677777777543 4333321110 0
Q ss_pred ---HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---C--CceEecCCCHHHHHHHHHHHhcC
Q 010184 241 ---KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCS 312 (516)
Q Consensus 241 ---~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~~l~~F~~~ 312 (516)
..-...+++++|+.+++.|+..+. ..|+|||||++++.+++.|+++| + ...|+|.++.+-|+..++.|+..
T Consensus 670 ~~d~~L~~lI~sSGKlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap 748 (1373)
T KOG0384|consen 670 MRDEALQALIQSSGKLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAP 748 (1373)
T ss_pred chHHHHHHHHHhcCcEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCC
Confidence 011123567889999999998888 89999999999999999999999 3 44699999999999999999987
Q ss_pred --CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhh
Q 010184 313 --RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (516)
Q Consensus 313 --~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~ 390 (516)
+.+-+|+||++||.||||..||+||++++.| ||+..+|+..||||+| |.+.|.||+||+++|+|+.
T Consensus 749 ~SddFvFLLSTRAGGLGINLatADTVIIFDSDW-NPQNDLQAqARaHRIG-----------Qkk~VnVYRLVTk~TvEeE 816 (1373)
T KOG0384|consen 749 DSDDFVFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAQARAHRIG-----------QKKHVNVYRLVTKNTVEEE 816 (1373)
T ss_pred CCCceEEEEecccCcccccccccceEEEeCCCC-CcchHHHHHHHHHhhc-----------ccceEEEEEEecCCchHHH
Confidence 4555778899999999999999999999998 9999999999999999 8889999999999999999
Q ss_pred HHHHHHHHHHHcCCceEEEecCCCCCCCCCcccCCHHHHHHHHHHHHhcCCcccccccc---CCChhhhhhhhhhhcccc
Q 010184 391 YSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQL---DEDADDIALHKARRIAGS 467 (516)
Q Consensus 391 ~~~~r~~~l~~~g~~~~vi~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 467 (516)
+..+..+++ ++++.||+.+..-....+-...+++|...+|+..+...=.+.|+|+. ++|.|.| ++|++..
T Consensus 817 ilERAk~Km---vLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeI----L~rae~~ 889 (1373)
T KOG0384|consen 817 ILERAKLKM---VLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEI----LERAETR 889 (1373)
T ss_pred HHHHHHHHh---hhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHH----Hhhcccc
Confidence 998888776 66888998877533444566677889999999998886555554443 3455555 6666666
Q ss_pred cccccC
Q 010184 468 MSAMSG 473 (516)
Q Consensus 468 ~~~~~~ 473 (516)
.+.-++
T Consensus 890 ~t~~~~ 895 (1373)
T KOG0384|consen 890 ITEESD 895 (1373)
T ss_pred cccccc
Confidence 655553
No 5
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=2.8e-49 Score=405.54 Aligned_cols=350 Identities=20% Similarity=0.288 Sum_probs=279.5
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..+|||||.++++|+... ..+-+||++++||+|||+++|+++..+ .+|+||+||.++ ..+|.+||++| .|
T Consensus 165 ~g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~St-L~NW~~Ef~rf--~P 241 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKST-LDNWMNEFKRF--TP 241 (971)
T ss_pred CCccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhh-HHHHHHHHHHh--CC
Confidence 378999999999987542 112489999999999999999877443 489999999998 77899999999 56
Q ss_pred CCcEEEEeCCcccc--------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHH
Q 010184 96 DDQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKV 165 (516)
Q Consensus 96 ~~~v~~~~~~~~~~--------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~ 165 (516)
...+.+|.|+...+ ..+..+|+||||+++... ...|....|.++||||||+++|. ...+.
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----------k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~ 311 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----------KSFLKKFNWRYLVIDEAHRIKNEKSKLSKI 311 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----------HHHHhcCCceEEEechhhhhcchhhHHHHH
Confidence 77899999986543 246799999999999663 45677789999999999999986 56688
Q ss_pred HhhcccceEEEEeccCCCCccchh-hhHhhhCCcc----------------------------------ccccHHHHHhC
Q 010184 166 ISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL----------------------------------YEANWLDLVKG 210 (516)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~----------------------------------~~~~~~~l~~~ 210 (516)
++.+....+|++||||.+++-.+. .|.+++-|-+ .+....++.
T Consensus 312 lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe-- 389 (971)
T KOG0385|consen 312 LREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE-- 389 (971)
T ss_pred HHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh--
Confidence 999999999999999999764321 2222333322 222222222
Q ss_pred CCcccceeEEEeccCCHHHHHHH---HHhhhh--------HHHHHH------------------------------hhhC
Q 010184 211 GFIANVQCAEVWCPMTKEFFSEY---LKKENS--------KKKQAL------------------------------YVMN 249 (516)
Q Consensus 211 g~l~~~~~~~v~~~~~~~~~~~~---l~~~~~--------~~~~~l------------------------------~~~~ 249 (516)
.-++|.....++++|+.-+.+-| +.+... .+..+. .+.+
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~n 469 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTN 469 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhc
Confidence 23667788899999987654433 211100 011111 1447
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCC--CccEEEEeC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSR--DLNTIFLSK 322 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~--~~~vLv~t~ 322 (516)
++|+.+++.|+..+. ..|+|||||+++...++.+..+. .+..++|+++.++|...++.|+..+ .+-++++|+
T Consensus 470 SGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTR 548 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTR 548 (971)
T ss_pred CcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecc
Confidence 799999999998888 89999999999999999999887 3567999999999999999999985 445667799
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHH
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (516)
+||.||||..||+||+|++.| ||+...|+..||||+| |.+.|.||+|++.+|+|+.+..+...+|.
T Consensus 549 AGGLGINL~aADtVIlyDSDW-NPQ~DLQAmDRaHRIG-----------Q~K~V~V~RLitentVEe~IveRA~~KL~ 614 (971)
T KOG0385|consen 549 AGGLGINLTAADTVILYDSDW-NPQVDLQAMDRAHRIG-----------QKKPVVVYRLITENTVEEKIVERAAAKLR 614 (971)
T ss_pred ccccccccccccEEEEecCCC-CchhhhHHHHHHHhhC-----------CcCceEEEEEeccchHHHHHHHHHHHHhc
Confidence 999999999999999999998 9999999999999999 88899999999999999998888777763
No 6
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=2.7e-46 Score=413.14 Aligned_cols=349 Identities=18% Similarity=0.240 Sum_probs=268.5
Q ss_pred CCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
.+|||||.+++++|+.. ..+.+|||+++||+|||+++++++..+ .+|+|||||.+ ++.||.+||.+|+ +.
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~--p~ 244 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFC--PV 244 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHC--CC
Confidence 58999999999988642 122489999999999999999887543 36899999987 5899999999996 45
Q ss_pred CcEEEEeCCcccc--------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHH
Q 010184 97 DQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (516)
Q Consensus 97 ~~v~~~~~~~~~~--------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l 166 (516)
..+..++|....+ ..+..+|+||||+++... ...+....|++||+||||+++++ ...+.+
T Consensus 245 l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e----------~~~L~k~~W~~VIvDEAHrIKN~~Sklskal 314 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE----------KTALKRFSWRYIIIDEAHRIKNENSLLSKTM 314 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH----------HHHhccCCCCEEEEcCccccCCHHHHHHHHH
Confidence 5777788765321 135688999999998552 35566788999999999999986 455677
Q ss_pred hhcccceEEEEeccCCCCccch-hhhHhhhCCcc----------------------------------ccccHHHHHhCC
Q 010184 167 SLTKSHCKLGLTATLVREDERI-TDLNFLIGPKL----------------------------------YEANWLDLVKGG 211 (516)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~-~~l~~~~gp~~----------------------------------~~~~~~~l~~~g 211 (516)
..+.+.++|+|||||.+++-.. ..+..++.|.. ++....++. .
T Consensus 315 r~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~--~ 392 (1033)
T PLN03142 315 RLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE--K 392 (1033)
T ss_pred HHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh--h
Confidence 7888999999999999876332 13333333332 222222222 2
Q ss_pred CcccceeEEEeccCCHHHHHHHHH---hhh------hHHHHH------------------------------HhhhCcch
Q 010184 212 FIANVQCAEVWCPMTKEFFSEYLK---KEN------SKKKQA------------------------------LYVMNPNK 252 (516)
Q Consensus 212 ~l~~~~~~~v~~~~~~~~~~~~l~---~~~------~~~~~~------------------------------l~~~~~~k 252 (516)
.+++.....++|+|++.....|.. ... .....+ ..+.+++|
T Consensus 393 ~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgK 472 (1033)
T PLN03142 393 GLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGK 472 (1033)
T ss_pred hCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhH
Confidence 366677788999999866554431 100 000000 01224578
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCC--CccEEEEeCCCc
Q 010184 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSR--DLNTIFLSKVGD 325 (516)
Q Consensus 253 ~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~--~~~vLv~t~~~~ 325 (516)
+.++..|+.... ..|+|+||||+++..++.|...| ++..|+|+++..+|..+++.|++++ ...+|++|++|+
T Consensus 473 l~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGG 551 (1033)
T PLN03142 473 MVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGG 551 (1033)
T ss_pred HHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccc
Confidence 889999998877 78999999999999999999988 3557999999999999999998752 345678899999
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHH
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (516)
.||||+.|++||+++++| ||..+.|++||+||+| |.+.|.||.|++.+|+|+.+..+...++.
T Consensus 552 lGINLt~Ad~VIiyD~dW-NP~~d~QAidRaHRIG-----------Qkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 552 LGINLATADIVILYDSDW-NPQVDLQAQDRAHRIG-----------QKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred cCCchhhCCEEEEeCCCC-ChHHHHHHHHHhhhcC-----------CCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999 78899999999999999988876666553
No 7
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.7e-45 Score=385.25 Aligned_cols=358 Identities=16% Similarity=0.217 Sum_probs=276.5
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
...|||||.+|+..++.+. ++++++|||+|||+++..++. ..+.++|||||+++|+.||.++|.+|...+...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~---~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNN---RRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcC---ceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 3689999999999998765 789999999999998876643 223489999999999999999999987665555
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-ccceEEEE
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~-~~~~~l~L 177 (516)
+..+.++... .....|+|+|++++.... ...+ ..+++||+||||++.++.+..++..+ ++++++||
T Consensus 189 ~~~i~~g~~~--~~~~~I~VaT~qsl~~~~---------~~~~--~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 189 MHKIYSGTAK--DTDAPIVVSTWQSAVKQP---------KEWF--DQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGL 255 (501)
T ss_pred eeEEecCccc--CCCCCEEEeeHHHHhhch---------hhhc--cccCEEEEEchhcccchhHHHHHHhhhccceEEEE
Confidence 5444444332 134789999999986531 1122 57899999999999999999999887 46789999
Q ss_pred eccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHH
Q 010184 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257 (516)
Q Consensus 178 TATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~ 257 (516)
||||.+.+.....+..++||..+..++.++++.|++.++.+..+.+..+......+. .............++.+...+.
T Consensus 256 TATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~Rn~~I~ 334 (501)
T PHA02558 256 TGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK-GEDYQEEIKYITSHTKRNKWIA 334 (501)
T ss_pred eccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhc-ccchHHHHHHHhccHHHHHHHH
Confidence 999976555555567789999999999999999999998887777766644322110 0000011111223444555566
Q ss_pred HHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEe-CCCccccccc
Q 010184 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSIDIP 331 (516)
Q Consensus 258 ~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t-~~~~~GlDlp 331 (516)
.++.... ..+.+++|||+++++++.+++.| ++.++||+++.++|.++++.|+++ +..+||+| +++++|+|+|
T Consensus 335 ~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 335 NLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccc
Confidence 6665554 56789999999999999999999 356899999999999999999986 78899988 9999999999
Q ss_pred ccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchh----------------hhHHHHH
Q 010184 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE----------------MFYSTKR 395 (516)
Q Consensus 332 ~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e----------------~~~~~~r 395 (516)
++++||++++ ..|...++||+||++|.+++| ..+.+|++++.-.+- ...+..|
T Consensus 413 ~ld~vIl~~p-~~s~~~~~QriGR~~R~~~~K----------~~~~i~D~vD~~~~~~~~~~~~~~~~~~~~~~~h~~~r 481 (501)
T PHA02558 413 NLHHVIFAHP-SKSKIIVLQSIGRVLRKHGSK----------SIATVWDIIDDLSVKPKSANAKKKYVHLNYALKHALER 481 (501)
T ss_pred cccEEEEecC-CcchhhhhhhhhccccCCCCC----------ceEEEEEeecccccccccccccchhhhhhHHHHHHHHH
Confidence 9999998855 469999999999999999643 378999999754432 3455677
Q ss_pred HHHHHHcCCceEEEe
Q 010184 396 QQFLIDQGYSFKVIT 410 (516)
Q Consensus 396 ~~~l~~~g~~~~vi~ 410 (516)
.+.+.++.+.+.+++
T Consensus 482 ~~~y~~~~~~~~~~~ 496 (501)
T PHA02558 482 IKIYNEEKFNYEIKK 496 (501)
T ss_pred HHHHhhccCceEEEE
Confidence 888888888887664
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=2e-44 Score=371.25 Aligned_cols=363 Identities=19% Similarity=0.277 Sum_probs=285.4
Q ss_pred CCCCccccCCCCCCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHH
Q 010184 12 VNPDLNMELKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQ 83 (516)
Q Consensus 12 ~~~~~~~~l~~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Q 83 (516)
++...+-.+.+.++|.|||.-+++|+. ..+ -+|||+++||+|||++++++.+.+ .+|.|||||+++ +++
T Consensus 386 ~~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~--l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsST-leN 462 (941)
T KOG0389|consen 386 FITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKK--LNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSST-LEN 462 (941)
T ss_pred ccccCccccCCCCcccchhhhhHHHHHHHHHcc--ccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchh-HHH
Confidence 344456668889999999999999863 333 488999999999999999887554 379999999998 889
Q ss_pred HHHHHHHhhCCCCCcEEEEeCCccccc---------cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccC
Q 010184 84 WAFQFKLWSTIQDDQICRFTSDSKERF---------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (516)
Q Consensus 84 w~~e~~~~~~~~~~~v~~~~~~~~~~~---------~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (516)
|.+||.+| .|...|..|+|...++- ....+|+||||+++... ..-..+|+..+|.++|+||+
T Consensus 463 WlrEf~kw--CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~-------kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 463 WLREFAKW--CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS-------KDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred HHHHHHHh--CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC-------hHHHHHHHhccccEEEecch
Confidence 99999999 57778999999865431 24789999999998753 33456777899999999999
Q ss_pred ccCCch---hHHHHHhhcccceEEEEeccCCCCccchh-hhHhhhCCccccccHHHHHh---------------------
Q 010184 155 HVVPAH---MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLYEANWLDLVK--------------------- 209 (516)
Q Consensus 155 H~~~~~---~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~~~~~~~~l~~--------------------- 209 (516)
|.+++. .|+.++. +.+..+|+|||||.+++-++. .|..++-|++|.....++..
T Consensus 534 HmLKN~~SeRy~~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qer 612 (941)
T KOG0389|consen 534 HMLKNRTSERYKHLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQER 612 (941)
T ss_pred hhhhccchHHHHHhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHH
Confidence 999986 4444444 579999999999999876543 44455556554433222210
Q ss_pred --------------------CCCcccceeEEEeccCCHHHHHHHHHhhhh-----------------------HH-----
Q 010184 210 --------------------GGFIANVQCAEVWCPMTKEFFSEYLKKENS-----------------------KK----- 241 (516)
Q Consensus 210 --------------------~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~-----------------------~~----- 241 (516)
-+.+++......+|+|+..+...|...... ++
T Consensus 613 IsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHP 692 (941)
T KOG0389|consen 613 ISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHP 692 (941)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcCh
Confidence 034556666778899987665444310000 00
Q ss_pred ----------------HHHH-------------------------------------------hhhCcchHHHHHHHHHH
Q 010184 242 ----------------KQAL-------------------------------------------YVMNPNKFRACEFLIRF 262 (516)
Q Consensus 242 ----------------~~~l-------------------------------------------~~~~~~k~~~~~~ll~~ 262 (516)
+.++ .++.++|++.+..|+..
T Consensus 693 LL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~ 772 (941)
T KOG0389|consen 693 LLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPK 772 (941)
T ss_pred hHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHH
Confidence 0000 14577899999999988
Q ss_pred HhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccE-EEEeCCCcccccccccCEE
Q 010184 263 HEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT-IFLSKVGDNSIDIPEANVI 336 (516)
Q Consensus 263 ~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~v-Lv~t~~~~~GlDlp~a~~v 336 (516)
.. ..|+|||+|+++..+++.+...|+ ...++|.++-.+|+.+++.|..+..+.| |++|++||.||||..||+|
T Consensus 773 ~k-~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~V 851 (941)
T KOG0389|consen 773 IK-KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTV 851 (941)
T ss_pred Hh-hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceE
Confidence 88 889999999999999999998884 4569999999999999999999855554 5669999999999999999
Q ss_pred EEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHH
Q 010184 337 IQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (516)
Q Consensus 337 I~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (516)
|+++-.+ ||-...|+.+||||.| |.+.|.||+||+++|+|+.+.+..+++|.
T Consensus 852 IihD~dF-NP~dD~QAEDRcHRvG-----------QtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 852 IIHDIDF-NPYDDKQAEDRCHRVG-----------QTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred EEeecCC-CCcccchhHHHHHhhC-----------CcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 9998888 9999999999999999 89999999999999999999988888875
No 9
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.4e-42 Score=356.38 Aligned_cols=350 Identities=19% Similarity=0.297 Sum_probs=266.4
Q ss_pred CCCCHHHHHHHHHHHhCC-CCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
..|+|||+++++|++... ....|||.++||+|||++.+++++.+ -+|+|||||.+ ++.||..||..| .++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w--~p~ 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTW--WPP 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHh--Ccc
Confidence 369999999999987642 23589999999999999988877443 37999999976 699999999999 566
Q ss_pred CcEEEEeCCccc-------------c-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 97 DQICRFTSDSKE-------------R-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 97 ~~v~~~~~~~~~-------------~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
..|.++++.... . ......|+||||+.+.... +.+....|+++|+||.|++.
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~~----------d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQG----------DDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcccC----------cccccccccEEEecCccccc
Confidence 778887765431 1 1235679999999886542 44557899999999999999
Q ss_pred ch--hHHHHHhhcccceEEEEeccCCCCccchh-hhHhh-----------------------------------------
Q 010184 159 AH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFL----------------------------------------- 194 (516)
Q Consensus 159 ~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~----------------------------------------- 194 (516)
|+ .....+..++..++++|||||.+++-.+. .|+.+
T Consensus 351 Npns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 351 NPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred CCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 87 44556677889999999999998653322 23322
Q ss_pred -----hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH--------HHHH----------------
Q 010184 195 -----IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK--------KQAL---------------- 245 (516)
Q Consensus 195 -----~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~--------~~~l---------------- 245 (516)
+.|.+.+....+... -.++..+...++|.+++.+.+.|.+-..+.. +..+
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 222223333333321 1566778899999999887655542111100 0000
Q ss_pred ---------------hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC------CceEecCCCHHHHHH
Q 010184 246 ---------------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTK 304 (516)
Q Consensus 246 ---------------~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~ 304 (516)
....++|.+++..|+.... ..|+++|+|++++.+++.+...|. +..++|.++...|+.
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 0123468899999997665 788999999999999999999884 346899999999999
Q ss_pred HHHHHhcCCCccE-EEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEc
Q 010184 305 ILQAFKCSRDLNT-IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383 (516)
Q Consensus 305 ~l~~F~~~~~~~v-Lv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~ 383 (516)
++++|+++..+.| |++|++||.|+||+.||-||+++|.| ||....|+..|+.|+| |.+.|.||+|++
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdW-NPStD~QAreRawRiG-----------QkkdV~VYRL~t 656 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDW-NPSTDNQARERAWRIG-----------QKKDVVVYRLMT 656 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCC-CCccchHHHHHHHhhc-----------CccceEEEEEec
Confidence 9999999856554 55689999999999999999999998 9999999999999999 888899999999
Q ss_pred CCchhhhHHHHH--HHHHH
Q 010184 384 TDTQEMFYSTKR--QQFLI 400 (516)
Q Consensus 384 ~~t~e~~~~~~r--~~~l~ 400 (516)
.+|+|+.++.+. +++|.
T Consensus 657 ~gTIEEkiY~rQI~Kq~Lt 675 (923)
T KOG0387|consen 657 AGTIEEKIYHRQIFKQFLT 675 (923)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 999999666443 44443
No 10
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=4.3e-42 Score=366.31 Aligned_cols=355 Identities=18% Similarity=0.287 Sum_probs=267.7
Q ss_pred CCccccCCCCCCCCHHHHHHHHHH-HhCCCCcccEEEecCCCcHHHHHHHHHHh----c--------CCCEEEEEeChhh
Q 010184 14 PDLNMELKPHAQPRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKSLVGVSAACR----I--------KKSCLCLATNAVS 80 (516)
Q Consensus 14 ~~~~~~l~~~~~Lr~yQ~~al~~~-~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~--------~~~~Lvl~P~~~L 80 (516)
|+..|..+-+.+||.||.++++|+ |-+...-+||+++.||+|||++++.+++- . ..|.|||||++ |
T Consensus 964 ~~y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-L 1042 (1549)
T KOG0392|consen 964 PEYKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-L 1042 (1549)
T ss_pred CccccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-h
Confidence 334444445578999999999985 33444568999999999999999987632 1 25799999976 8
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEeCCccccc-----cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCc
Q 010184 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH 155 (516)
Q Consensus 81 ~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH 155 (516)
+..|..|+.+|+.. .+|..|.|...++. -..++|+|++|+.+++. .+.+.+..|.|+|+||.|
T Consensus 1043 tGHW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD----------~d~l~~~~wNYcVLDEGH 1110 (1549)
T KOG0392|consen 1043 TGHWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRND----------VDYLIKIDWNYCVLDEGH 1110 (1549)
T ss_pred hhHHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHH----------HHHHHhcccceEEecCcc
Confidence 99999999999654 56777777654432 14579999999999664 577778999999999999
Q ss_pred cCCch--hHHHHHhhcccceEEEEeccCCCCccchh-hhHhhhCCcc------ccc--------------cHHHHHhC--
Q 010184 156 VVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL------YEA--------------NWLDLVKG-- 210 (516)
Q Consensus 156 ~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~------~~~--------------~~~~l~~~-- 210 (516)
.++|. ...+.++.+.+.++|.|||||++++-... .|+.++-|.. |.. +-.+. +.
T Consensus 1111 VikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~-EaG~ 1189 (1549)
T KOG0392|consen 1111 VIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQ-EAGV 1189 (1549)
T ss_pred eecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHH-HhhH
Confidence 99986 55667888899999999999999874322 3443333321 100 00010 11
Q ss_pred -----------------------CCcccceeEEEeccCCHHHHHHHH---Hhh------------hh-H--H----HHHH
Q 010184 211 -----------------------GFIANVQCAEVWCPMTKEFFSEYL---KKE------------NS-K--K----KQAL 245 (516)
Q Consensus 211 -----------------------g~l~~~~~~~v~~~~~~~~~~~~l---~~~------------~~-~--~----~~~l 245 (516)
.-++|..+...+|++++.+.+-|. .+. .+ . + +++.
T Consensus 1190 lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLq 1269 (1549)
T KOG0392|consen 1190 LALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQ 1269 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHH
Confidence 134466677889999886644433 110 00 0 0 0111
Q ss_pred h-----------------------------------hhCcchHHHHHHHHHHHhh-------------cCCCeEEEEecc
Q 010184 246 Y-----------------------------------VMNPNKFRACEFLIRFHEQ-------------QRGDKIIVFADN 277 (516)
Q Consensus 246 ~-----------------------------------~~~~~k~~~~~~ll~~~~~-------------~~~~k~iVF~~~ 277 (516)
+ ..++.|+.++..|+..-.. -.++|+||||+.
T Consensus 1270 YlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQl 1349 (1549)
T KOG0392|consen 1270 YLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQL 1349 (1549)
T ss_pred HHHHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeH
Confidence 0 2345688888888865321 257899999999
Q ss_pred HHHHHHHHHHhC------C--ceEecCCCHHHHHHHHHHHhcCCCccEEEE-eCCCcccccccccCEEEEecCCCCCHHH
Q 010184 278 LFALTEYAMKLR------K--PMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQ 348 (516)
Q Consensus 278 ~~~~~~l~~~L~------~--~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~-t~~~~~GlDlp~a~~vI~~~~~~~s~~~ 348 (516)
+.+++.+.+.|- + ..++|+.++.+|++++++|+++|.++||+. |.+||.|+|++.||+||++.-.| ||..
T Consensus 1350 K~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDW-NPMr 1428 (1549)
T KOG0392|consen 1350 KSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDW-NPMR 1428 (1549)
T ss_pred HHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCC-Cchh
Confidence 999999999882 2 368999999999999999999999999876 69999999999999999997666 9999
Q ss_pred HHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHH
Q 010184 349 EAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (516)
Q Consensus 349 ~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (516)
..|+++|+||+| |.+.|.||+|++++|.||.+.-.
T Consensus 1429 DLQAMDRAHRIG-----------QKrvVNVyRlItrGTLEEKVMgL 1463 (1549)
T KOG0392|consen 1429 DLQAMDRAHRIG-----------QKRVVNVYRLITRGTLEEKVMGL 1463 (1549)
T ss_pred hHHHHHHHHhhc-----------CceeeeeeeehhcccHHHHHhhH
Confidence 999999999999 89999999999999999977544
No 11
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=8.6e-40 Score=344.31 Aligned_cols=389 Identities=17% Similarity=0.224 Sum_probs=290.8
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..+|++||.++++||.+- +.+-+||++++||+|||++.++++..+ .+|.|||||+++| .+|..||.+| .|
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlstL-~NW~~Ef~kW--aP 468 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLSTL-VNWSSEFPKW--AP 468 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEecccccc-CCchhhcccc--cc
Confidence 368999999999998763 234699999999999999999988543 4899999999985 5599999999 55
Q ss_pred CCcEEEEeCCcccc-------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHH
Q 010184 96 DDQICRFTSDSKER-------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (516)
Q Consensus 96 ~~~v~~~~~~~~~~-------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l 166 (516)
......|.|....+ ..+.+.|++|||+.+... ...|...+|.++||||.|++++. .....+
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd----------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L 538 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD----------KALLSKISWKYMIIDEGHRMKNAICKLTDTL 538 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC----------HHHHhccCCcceeecccccccchhhHHHHHh
Confidence 55666677764322 237899999999999773 35667799999999999999986 344444
Q ss_pred h-hcccceEEEEeccCCCCccchh-hhHhhhCCccccccH--HH-----HHhCC--------------------------
Q 010184 167 S-LTKSHCKLGLTATLVREDERIT-DLNFLIGPKLYEANW--LD-----LVKGG-------------------------- 211 (516)
Q Consensus 167 ~-~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~~~~~~--~~-----l~~~g-------------------------- 211 (516)
. .+.+.++|+|||||.++.-... .|.+++-|.++.... .+ ....|
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlL 618 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLL 618 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHH
Confidence 4 6678889999999999885432 344444454432210 00 00111
Q ss_pred ---------CcccceeEEEeccCCHHHHHHHHHhh--------h--h-----------HHH-------------------
Q 010184 212 ---------FIANVQCAEVWCPMTKEFFSEYLKKE--------N--S-----------KKK------------------- 242 (516)
Q Consensus 212 ---------~l~~~~~~~v~~~~~~~~~~~~l~~~--------~--~-----------~~~------------------- 242 (516)
.++......+.|.|+.-....|-... . . ..-
T Consensus 619 RRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~ 698 (1157)
T KOG0386|consen 619 RRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTL 698 (1157)
T ss_pred HhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccc
Confidence 11112224455665543222221000 0 0 000
Q ss_pred ---HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCC-
Q 010184 243 ---QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR- 313 (516)
Q Consensus 243 ---~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~- 313 (516)
....+...+|+.+++.++..+. +.|++++.||++......+..+|. +..++|.+...+|-..++.|+..+
T Consensus 699 ~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds 777 (1157)
T KOG0386|consen 699 HYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDS 777 (1157)
T ss_pred ccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCC
Confidence 0012345689999999999998 999999999999999999999993 567999999999999999999972
Q ss_pred -CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHH
Q 010184 314 -DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (516)
Q Consensus 314 -~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (516)
-..+|.+|.+|+.|+|++.||+||++++.| ||.++.|+..|+||+| |.+.|.++++++.+++|+.+-
T Consensus 778 ~yf~FllstragglglNlQtadtviifdsdw-np~~d~qaqdrahrig-----------q~~evRv~rl~tv~sveE~il 845 (1157)
T KOG0386|consen 778 PYFIFLLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIG-----------QKKEVRVLRLITVNSVEEKIL 845 (1157)
T ss_pred ceeeeeeeecccccccchhhcceEEEecCCC-CchhHHHHHHHHHHhh-----------chhheeeeeeehhhHHHHHHH
Confidence 334566799999999999999999999988 9999999999999999 788899999999999999887
Q ss_pred HHHHHHHHHcCCceEEEecCCCCCCCCCcccCCHHHHHHHHHHHHhcCCccccc
Q 010184 393 TKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGL 446 (516)
Q Consensus 393 ~~r~~~l~~~g~~~~vi~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~ 446 (516)
...+.++ +.+-+||+. |.++ ..++.++++++|+.++...+.++++
T Consensus 846 ~~a~~Kl---~~d~kviqa--g~fd----n~st~~eR~~~Le~~l~~~~~~~~~ 890 (1157)
T KOG0386|consen 846 AEAFYKL---DVDGKVIQA--GKFD----NKSTAEEREMFLEQLLEMEGDEEEE 890 (1157)
T ss_pred HHHHHhc---CchHhhhhc--cccc----CCCcHHHHHHHHHHHHhCCCccccc
Confidence 7766655 556677762 3333 4788999999999999988775553
No 12
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-38 Score=312.84 Aligned_cols=342 Identities=23% Similarity=0.289 Sum_probs=240.3
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
+...+.|.||.....+.+.. ++++++|||+|||++|+..+.. -++++|+++||+-|+.|....+.+.+++++
T Consensus 11 p~~ie~R~YQ~~i~a~al~~----NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK----NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccccHHHHHHHHHHHHhhc----CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 34578999999999888775 7899999999999999988753 245799999999999999999999999999
Q ss_pred CcEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHH----HHh
Q 010184 97 DQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK----VIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~----~l~ 167 (516)
..+..++|..... ......|+|+||+.+-++.... -+...++.++|+||||+.... .|.- .+.
T Consensus 87 ~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G--------rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 87 DEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG--------RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred hheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC--------ccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 9999999985432 3456889999999997764432 122356789999999998754 4433 344
Q ss_pred hcccceEEEEeccCCCCccchhhhHhhhC-------------------Ccc----------------------ccccHHH
Q 010184 168 LTKSHCKLGLTATLVREDERITDLNFLIG-------------------PKL----------------------YEANWLD 206 (516)
Q Consensus 168 ~~~~~~~l~LTATp~~~~~~~~~l~~~~g-------------------p~~----------------------~~~~~~~ 206 (516)
.-+...+|||||||....+.+..+-.-+| .+- ++..+..
T Consensus 159 ~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~ 238 (542)
T COG1111 159 SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKP 238 (542)
T ss_pred hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 44556799999999875555443322222 110 1112222
Q ss_pred HHhCCCcccceeEEEe---------------ccCCHHH---------------------------HHHHHHhhh------
Q 010184 207 LVKGGFIANVQCAEVW---------------CPMTKEF---------------------------FSEYLKKEN------ 238 (516)
Q Consensus 207 l~~~g~l~~~~~~~v~---------------~~~~~~~---------------------------~~~~l~~~~------ 238 (516)
+.+.|++..... ++ ....... +..|+.+..
T Consensus 239 L~~~g~~~~~~~--~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~ 316 (542)
T COG1111 239 LKELGVIESSSP--VSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKG 316 (542)
T ss_pred HHHcCceeccCc--ccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhccc
Confidence 223333321110 00 0000000 001111000
Q ss_pred -h-----------HHHH---HH----hhhCcchHHHHHHHHH-HHhhcCCCeEEEEeccHHHHHHHHHHhC-----Cc-e
Q 010184 239 -S-----------KKKQ---AL----YVMNPNKFRACEFLIR-FHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-M 292 (516)
Q Consensus 239 -~-----------~~~~---~l----~~~~~~k~~~~~~ll~-~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~-~ 292 (516)
+ ..+. .. ......|+..+..++. ..+...+.++|||++++..++.+.+.|+ +. .
T Consensus 317 ~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~r 396 (542)
T COG1111 317 GSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVR 396 (542)
T ss_pred chHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeE
Confidence 0 0000 00 0112346677777774 3434667899999999999999999993 22 2
Q ss_pred Ee--------cCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 010184 293 IY--------GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (516)
Q Consensus 293 i~--------g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~ 364 (516)
+. -+|++.+..+++++|+.| .++|||||++|++|+|+|++|.||+|++-+ |+...+||.||+||..
T Consensus 397 FiGQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLVaTSVgEEGLDIp~vDlVifYEpvp-SeIR~IQR~GRTGR~r---- 470 (542)
T COG1111 397 FIGQASREGDKGMSQKEQKEIIDQFRKG-EYNVLVATSVGEEGLDIPEVDLVIFYEPVP-SEIRSIQRKGRTGRKR---- 470 (542)
T ss_pred EeeccccccccccCHHHHHHHHHHHhcC-CceEEEEcccccccCCCCcccEEEEecCCc-HHHHHHHhhCccccCC----
Confidence 23 358999999999999998 999999999999999999999999997765 9999999999999975
Q ss_pred ccccCCCCceeEEEEEEEcCCchhhhHH
Q 010184 365 DRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (516)
Q Consensus 365 ~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (516)
...+|-|++++|-++.|+
T Consensus 471 ----------~Grv~vLvt~gtrdeayy 488 (542)
T COG1111 471 ----------KGRVVVLVTEGTRDEAYY 488 (542)
T ss_pred ----------CCeEEEEEecCchHHHHH
Confidence 356788999999999554
No 13
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=7.4e-38 Score=345.34 Aligned_cols=348 Identities=15% Similarity=0.159 Sum_probs=240.7
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
...+.|.|||..++..++... ..+++|++++|+|||+.+..++... .+++|||||. .|..||..|+.+|++++
T Consensus 148 ~~~~~l~pHQl~~~~~vl~~~-~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~ 225 (956)
T PRK04914 148 GARASLIPHQLYIAHEVGRRH-APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLR 225 (956)
T ss_pred cCCCCCCHHHHHHHHHHhhcc-CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC
Confidence 456789999999998776543 3578999999999999999888543 2699999997 58999999999888764
Q ss_pred CCcEEEEeCCccc-------cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc------hhH
Q 010184 96 DDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMF 162 (516)
Q Consensus 96 ~~~v~~~~~~~~~-------~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~ 162 (516)
..++.++... ..-...+++|+||+.+... ....+.+....|++||+||||++.+ ..|
T Consensus 226 ---~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~-------~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y 295 (956)
T PRK04914 226 ---FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRN-------KQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREY 295 (956)
T ss_pred ---eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhC-------HHHHHHHhhcCCCEEEEechhhhccCCCCcCHHH
Confidence 4444443211 0112467999999999753 2234555568999999999999973 234
Q ss_pred HHHHhhc--ccceEEEEeccCCCCccc-hhhhHhhhCCcccccc--H---------------------------------
Q 010184 163 RKVISLT--KSHCKLGLTATLVREDER-ITDLNFLIGPKLYEAN--W--------------------------------- 204 (516)
Q Consensus 163 ~~~l~~~--~~~~~l~LTATp~~~~~~-~~~l~~~~gp~~~~~~--~--------------------------------- 204 (516)
+. +..+ ...++|+|||||.+++.. ...+..++.|..+... +
T Consensus 296 ~~-v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ 374 (956)
T PRK04914 296 QV-VEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGE 374 (956)
T ss_pred HH-HHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHH
Confidence 43 3333 356899999999975432 1123334444332100 0
Q ss_pred -------H------------------HHHh-----CC--------------CcccceeEEEeccCCHHHHHHHHHhh-hh
Q 010184 205 -------L------------------DLVK-----GG--------------FIANVQCAEVWCPMTKEFFSEYLKKE-NS 239 (516)
Q Consensus 205 -------~------------------~l~~-----~g--------------~l~~~~~~~v~~~~~~~~~~~~l~~~-~~ 239 (516)
. ++++ .| -.+......+..+++.++...+. .. ..
T Consensus 375 ll~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~-~~~~~ 453 (956)
T PRK04914 375 LLGEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIK-VSLEA 453 (956)
T ss_pred HhcccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHH-HhHHH
Confidence 0 0000 00 01112223344455443222111 00 00
Q ss_pred HH------HHHH--------hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC------CceEecCCCH
Q 010184 240 KK------KQAL--------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSH 299 (516)
Q Consensus 240 ~~------~~~l--------~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------~~~i~g~~~~ 299 (516)
.. ...+ ......|...+..+++.+ .+.|+||||++...+..+++.|. +..+||++++
T Consensus 454 ~~~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~ 530 (956)
T PRK04914 454 RARDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSI 530 (956)
T ss_pred HHHhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCH
Confidence 00 0000 111223555666666543 47899999999999999999992 4469999999
Q ss_pred HHHHHHHHHHhcC-CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEE
Q 010184 300 VERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFF 378 (516)
Q Consensus 300 ~eR~~~l~~F~~~-~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~ 378 (516)
.+|.++++.|+++ +..+|||||.++++|+|++.+++||+++.|| ||..|.||+||++|+| |.+++.+
T Consensus 531 ~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~-nP~~~eQRIGR~~RiG-----------Q~~~V~i 598 (956)
T PRK04914 531 IERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF-NPDLLEQRIGRLDRIG-----------QKHDIQI 598 (956)
T ss_pred HHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC-CHHHHHHHhcccccCC-----------CCceEEE
Confidence 9999999999986 3799999999999999999999999999887 9999999999999999 7778999
Q ss_pred EEEEcCCchhhhHHHHHHH
Q 010184 379 YSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 379 y~lv~~~t~e~~~~~~r~~ 397 (516)
|.+...+|.++.+...-..
T Consensus 599 ~~~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 599 HVPYLEGTAQERLFRWYHE 617 (956)
T ss_pred EEccCCCCHHHHHHHHHhh
Confidence 9999999999877654433
No 14
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=3.4e-36 Score=318.99 Aligned_cols=364 Identities=21% Similarity=0.250 Sum_probs=260.7
Q ss_pred CCCCCCCHHHHHHHHHHHhC--C-----CCcccEEEecCCCcHHHHHHHHHHhc-----C-----CCEEEEEeChhhHHH
Q 010184 21 KPHAQPRPYQEKSLSKMFGN--G-----RARSGIIVLPCGAGKSLVGVSAACRI-----K-----KSCLCLATNAVSVDQ 83 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~--~-----~~~~~il~~~tG~GKTl~~i~~i~~~-----~-----~~~Lvl~P~~~L~~Q 83 (516)
.-...|||||.++++.+..+ + ...+||+++++|+|||++.|+++... . .+.|||||.+ |+.+
T Consensus 234 ~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~n 312 (776)
T KOG0390|consen 234 LLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNN 312 (776)
T ss_pred cHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHH
Confidence 33467999999999987653 1 34588999999999999999988432 3 6799999976 7999
Q ss_pred HHHHHHHhhCCCCCcEEEEeCCccccc------------cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEE
Q 010184 84 WAFQFKLWSTIQDDQICRFTSDSKERF------------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLM 151 (516)
Q Consensus 84 w~~e~~~~~~~~~~~v~~~~~~~~~~~------------~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIl 151 (516)
|++||.+|.+........+.+..++.+ .-...|.+.+|+++. ..++.+....+|++|+
T Consensus 313 WkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~----------~~~~~il~~~~glLVc 382 (776)
T KOG0390|consen 313 WKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETAS----------DYCRKILLIRPGLLVC 382 (776)
T ss_pred HHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHH----------HHHHHHhcCCCCeEEE
Confidence 999999997644555566666665411 123568888898884 3466777799999999
Q ss_pred ccCccCCch--hHHHHHhhcccceEEEEeccCCCCccch-hhhHhhhCCccccc----------------c---------
Q 010184 152 DEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPKLYEA----------------N--------- 203 (516)
Q Consensus 152 DEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~~~gp~~~~~----------------~--------- 203 (516)
||+|+..|. .+.+++..++.+++|+|||||.++|-.+ ..+..+..|..... .
T Consensus 383 DEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~ 462 (776)
T KOG0390|consen 383 DEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDRE 462 (776)
T ss_pred CCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhh
Confidence 999999986 5666888899999999999999987543 24444444433110 0
Q ss_pred ----HHHHH---h-----------CCCcccceeEEEeccCCHHHHHHHHHhhhh--HH-------------H------HH
Q 010184 204 ----WLDLV---K-----------GGFIANVQCAEVWCPMTKEFFSEYLKKENS--KK-------------K------QA 244 (516)
Q Consensus 204 ----~~~l~---~-----------~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~--~~-------------~------~~ 244 (516)
..+|. . ..+++......+.|..++.+...|-.-... .. . .+
T Consensus 463 ~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L 542 (776)
T KOG0390|consen 463 REERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSL 542 (776)
T ss_pred hHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHh
Confidence 11111 1 135666666777777776654444311111 00 0 00
Q ss_pred Hh--------------------------h---hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----C
Q 010184 245 LY--------------------------V---MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----K 290 (516)
Q Consensus 245 l~--------------------------~---~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~ 290 (516)
+. . .-++|+..+..++.........++.+.++.+..++.+....+ +
T Consensus 543 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~ 622 (776)
T KOG0390|consen 543 LLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEV 622 (776)
T ss_pred hcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceE
Confidence 00 0 012456667777644443455666667777777777776663 4
Q ss_pred ceEecCCCHHHHHHHHHHHhcCCCc-cEE-EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCcccccc
Q 010184 291 PMIYGATSHVERTKILQAFKCSRDL-NTI-FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (516)
Q Consensus 291 ~~i~g~~~~~eR~~~l~~F~~~~~~-~vL-v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~ 368 (516)
..++|.++..+|+.+++.|++.+.. .|+ .+|+|+|+||||-.|+-||+++++| ||+...|+++|+.|.|
T Consensus 623 ~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW-NPa~d~QAmaR~~RdG-------- 693 (776)
T KOG0390|consen 623 LRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW-NPAVDQQAMARAWRDG-------- 693 (776)
T ss_pred EEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC-CchhHHHHHHHhccCC--------
Confidence 5799999999999999999998433 444 4579999999999999999999998 9999999999999999
Q ss_pred CCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHcCCceEEEe
Q 010184 369 GGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVIT 410 (516)
Q Consensus 369 ~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~vi~ 410 (516)
|.+.+++|+|++.+|+|+.+..+. ..+++..--++.
T Consensus 694 ---QKk~v~iYrLlatGtiEEk~~qrq---~~K~~lS~~v~~ 729 (776)
T KOG0390|consen 694 ---QKKPVYIYRLLATGTIEEKIYQRQ---THKEGLSSMVFD 729 (776)
T ss_pred ---CcceEEEEEeecCCCchHHHHHHH---HHhhhhhheEEe
Confidence 899999999999999999766543 334455555554
No 15
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-37 Score=294.57 Aligned_cols=317 Identities=17% Similarity=0.194 Sum_probs=235.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--C----CCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--K----KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|.+.|.++++..+++. ++|..++||+|||.+++.++... . -.+||++|+++|+.|..+.|..+....+.
T Consensus 82 ~~PT~IQ~~aiP~~L~g~---dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGR---DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCCchhhhhhcchhhCCC---cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 578999999999998875 99999999999999999887432 1 35999999999999999999999777777
Q ss_pred cEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhh----
Q 010184 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL---- 168 (516)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~---- 168 (516)
.+.++.|+.... +...++|+|+||+.|...... ..-++-....++|+|||+++.+..|...+..
T Consensus 159 r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~-------Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN-------TKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh-------ccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 888888886532 346799999999998654321 1122234557899999999999877765544
Q ss_pred cc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 169 TK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
++ .++.+++|||....-.+... .. .-.++.+..-.. |. .....++..+..
T Consensus 232 ip~erqt~LfsATMt~kv~kL~r-as------------------l~~p~~v~~s~k------y~----tv~~lkQ~ylfv 282 (476)
T KOG0330|consen 232 IPRERQTFLFSATMTKKVRKLQR-AS------------------LDNPVKVAVSSK------YQ----TVDHLKQTYLFV 282 (476)
T ss_pred cCccceEEEEEeecchhhHHHHh-hc------------------cCCCeEEeccch------hc----chHHhhhheEec
Confidence 33 34679999999865554220 00 111111111000 00 111112222333
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
....|-..+-+|++.+. |..+||||++....+.++-.|+ +..+||+|+++.|...++.|+++ ...||+||+
T Consensus 283 ~~k~K~~yLV~ll~e~~---g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv~TD 358 (476)
T KOG0330|consen 283 PGKDKDTYLVYLLNELA---GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILVCTD 358 (476)
T ss_pred cccccchhHHHHHHhhc---CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEEecc
Confidence 44445567777887654 7899999999999888887773 45699999999999999999998 999999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHH
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (516)
++++|+|+|.+++||+||.|. +..+|+||+||++|+|. .....+||+. +|.+...+-...+
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~-~skDYIHRvGRtaRaGr-------------sG~~ItlVtq--yDve~~qrIE~~~ 419 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPT-HSKDYIHRVGRTARAGR-------------SGKAITLVTQ--YDVELVQRIEHAL 419 (476)
T ss_pred hhcccCCCCCceEEEecCCCC-cHHHHHHHcccccccCC-------------CcceEEEEeh--hhhHHHHHHHHHH
Confidence 999999999999999999887 88999999999999994 4566789997 4444444444444
No 16
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.1e-36 Score=325.40 Aligned_cols=320 Identities=20% Similarity=0.215 Sum_probs=220.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-Hhc----------CCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+|+|+|.++++.++.+. +.|+++|||+|||++++.++ .++ +..+|||+|+++|+.|+.+++.++.
T Consensus 151 ~~pt~iQ~~aip~~l~G~---dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 151 TEPTPIQVQGWPIALSGR---DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 369999999999988764 99999999999999987654 221 1248999999999999999999987
Q ss_pred CCCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----H
Q 010184 93 TIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----R 163 (516)
Q Consensus 93 ~~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~ 163 (516)
......+....++... .+....+|+|+||+.|.....+. .+.-..+.+||+||||++.+..| .
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--------~~~l~~v~~lViDEAd~mld~gf~~~i~ 299 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--------VTNLRRVTYLVLDEADRMLDMGFEPQIR 299 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--------CCChhhCcEEEeehHHhhhhcchHHHHH
Confidence 6555556555555331 13356899999999885543211 01124678999999999987654 4
Q ss_pred HHHhhcc-cceEEEEeccCCCCccchhhhHhhhC--CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhH
Q 010184 164 KVISLTK-SHCKLGLTATLVREDERITDLNFLIG--PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (516)
Q Consensus 164 ~~l~~~~-~~~~l~LTATp~~~~~~~~~l~~~~g--p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~ 240 (516)
+++..+. ..+.+++|||+..+.... ...++. |........++. ....+......
T Consensus 300 ~il~~~~~~~q~l~~SAT~p~~v~~l--~~~l~~~~~v~i~vg~~~l~---~~~~i~q~~~~------------------ 356 (545)
T PTZ00110 300 KIVSQIRPDRQTLMWSATWPKEVQSL--ARDLCKEEPVHVNVGSLDLT---ACHNIKQEVFV------------------ 356 (545)
T ss_pred HHHHhCCCCCeEEEEEeCCCHHHHHH--HHHHhccCCEEEEECCCccc---cCCCeeEEEEE------------------
Confidence 4555443 456899999986432221 112221 111111000000 00001000000
Q ss_pred HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCc
Q 010184 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDL 315 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~ 315 (516)
.....|...+..++.... ..+.++||||+++..++.++..|. +..+||++++.+|.++++.|+++ ++
T Consensus 357 ------~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~ 428 (545)
T PTZ00110 357 ------VEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KS 428 (545)
T ss_pred ------EechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CC
Confidence 111123344555555443 367899999999999999999993 45799999999999999999998 99
Q ss_pred cEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHH
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r 395 (516)
+|||||+++++|||+|++++||+++.+. +...|+||+||++|.|. ....|.+++.+. ...+...
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~~d~P~-s~~~yvqRiGRtGR~G~-------------~G~ai~~~~~~~--~~~~~~l 492 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVINFDFPN-QIEDYVHRIGRTGRAGA-------------KGASYTFLTPDK--YRLARDL 492 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccccCCC-------------CceEEEEECcch--HHHHHHH
Confidence 9999999999999999999999998775 99999999999999984 234456666543 3344444
Q ss_pred HHHHHH
Q 010184 396 QQFLID 401 (516)
Q Consensus 396 ~~~l~~ 401 (516)
.+.|.+
T Consensus 493 ~~~l~~ 498 (545)
T PTZ00110 493 VKVLRE 498 (545)
T ss_pred HHHHHH
Confidence 444543
No 17
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=2e-36 Score=307.58 Aligned_cols=345 Identities=17% Similarity=0.297 Sum_probs=259.5
Q ss_pred CCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
.+|.+||.++++|+.+- ..+-+|||+++||+|||++++++++++ .+|+|||+|.++ ..+|.+||.+| +|.
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaSt-L~NWaqEisrF--lP~ 642 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPAST-LHNWAQEISRF--LPS 642 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHH-HhHHHHHHHHh--Ccc
Confidence 57999999999987653 223589999999999999999987654 589999999998 78899999999 677
Q ss_pred CcEEEEeCCccccc--------------cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--
Q 010184 97 DQICRFTSDSKERF--------------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-- 160 (516)
Q Consensus 97 ~~v~~~~~~~~~~~--------------~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-- 160 (516)
.++..|.|+..++- ....+|+||+|+++... -..|...+|.++|+|||+.+++.
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD----------eky~qkvKWQYMILDEAQAIKSSsS 712 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD----------EKYLQKVKWQYMILDEAQAIKSSSS 712 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech----------HHHHHhhhhhheehhHHHHhhhhhh
Confidence 78888888765431 24689999999999764 24455689999999999999976
Q ss_pred -hHHHHHhhcccceEEEEeccCCCCccchh-hhHhhhCCccccc------------------------------------
Q 010184 161 -MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLYEA------------------------------------ 202 (516)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~~~~------------------------------------ 202 (516)
.|..++. ++++.+|+|||||.++.-.+. .|..++-|.+|..
T Consensus 713 ~RWKtLLs-F~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILKP 791 (1185)
T KOG0388|consen 713 SRWKTLLS-FKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILKP 791 (1185)
T ss_pred hHHHHHhh-hhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHhH
Confidence 4444444 477888999999998763322 3444444544321
Q ss_pred -----cHHHHHhCCCcccceeEEEeccCCHHHHHHHHH--hhhh------------------------------------
Q 010184 203 -----NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK--KENS------------------------------------ 239 (516)
Q Consensus 203 -----~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~--~~~~------------------------------------ 239 (516)
-..+.+ .-+.......++|.++..+..-|-. ...+
T Consensus 792 FMLRRvKkdV~--sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~ 869 (1185)
T KOG0388|consen 792 FMLRRVKKDVI--SELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSD 869 (1185)
T ss_pred HHHHHHHHHHH--HHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEccc
Confidence 111111 0111223355666665432111100 0000
Q ss_pred --------------------------------------------------------------------------------
Q 010184 240 -------------------------------------------------------------------------------- 239 (516)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (516)
T Consensus 870 nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kav 949 (1185)
T KOG0388|consen 870 NLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAV 949 (1185)
T ss_pred CHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHH
Confidence
Q ss_pred -------------HHHHHH------------------------------------------------------hhhCcch
Q 010184 240 -------------KKKQAL------------------------------------------------------YVMNPNK 252 (516)
Q Consensus 240 -------------~~~~~l------------------------------------------------------~~~~~~k 252 (516)
..++++ ....++|
T Consensus 950 tr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgK 1029 (1185)
T KOG0388|consen 950 TRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGK 1029 (1185)
T ss_pred HHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccc
Confidence 000000 0124578
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccc
Q 010184 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (516)
Q Consensus 253 ~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~G 327 (516)
+..++.|+..+. ..|+++|+|.+...+++.+.++|. ...++|+....+|..++..|+..+.+.+|++|.+||.|
T Consensus 1030 L~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLG 1108 (1185)
T KOG0388|consen 1030 LVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLG 1108 (1185)
T ss_pred eeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCccc
Confidence 889999998888 899999999999999999999993 34689999999999999999997556677889999999
Q ss_pred ccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 328 IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 328 lDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
||+++||+||+|++.| ||....|+.+|+||.| |.+.+.||+|+.++|+|+.+..+..+
T Consensus 1109 INLTAADTViFYdSDW-NPT~D~QAMDRAHRLG-----------QTrdvtvyrl~~rgTvEEk~l~rA~q 1166 (1185)
T KOG0388|consen 1109 INLTAADTVIFYDSDW-NPTADQQAMDRAHRLG-----------QTRDVTVYRLITRGTVEEKVLERANQ 1166 (1185)
T ss_pred ccccccceEEEecCCC-CcchhhHHHHHHHhcc-----------CccceeeeeecccccHHHHHHHHhhh
Confidence 9999999999999998 9999999999999999 88899999999999999977655443
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-36 Score=315.25 Aligned_cols=293 Identities=20% Similarity=0.154 Sum_probs=209.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.+|+|+|.+++..++.+. +.++.+|||+|||++++.++... ..++||++|+++|+.|+.+.+..+..
T Consensus 22 ~~p~~iQ~~ai~~~~~g~---d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGR---DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 469999999999998764 89999999999999988766421 24799999999999999999998876
Q ss_pred CCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhh
Q 010184 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~ 168 (516)
..+..+..++|+... .+.+..+|+|+|++.+...... ..+....+++||+||||++....|...+..
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--------~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--------ENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--------CCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 666778888876432 2345678999999988543211 112235678999999999987665554443
Q ss_pred c----c-cceEEEEeccCCCCccchhhhHhhh--CCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 169 T----K-SHCKLGLTATLVREDERITDLNFLI--GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 169 ~----~-~~~~l~LTATp~~~~~~~~~l~~~~--gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
+ . ..+.+++|||+.... ...+...+ .|.......... ....+......++
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~--~~~~~~~~~~~~~~i~~~~~~~----~~~~i~~~~~~~~----------------- 227 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDA--VQDFAERLLNDPVEVEAEPSRR----ERKKIHQWYYRAD----------------- 227 (434)
T ss_pred HHHhCccccEEEEEEeecCHHH--HHHHHHHHccCCEEEEecCCcc----cccCceEEEEEeC-----------------
Confidence 3 2 246799999996321 11111111 111111100000 0000000000000
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCcc
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~ 316 (516)
....|...+..++.. ....++||||+++..++.++..|. +.++||++++.+|..+++.|+++ .++
T Consensus 228 ------~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~ 297 (434)
T PRK11192 228 ------DLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVN 297 (434)
T ss_pred ------CHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCc
Confidence 011234455555543 246799999999999999999983 56799999999999999999997 999
Q ss_pred EEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 317 vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|||||+++++|||+|++++||+++.+. |...|+||+||++|.|.
T Consensus 298 vLVaTd~~~~GiDip~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~ 341 (434)
T PRK11192 298 VLVATDVAARGIDIDDVSHVINFDMPR-SADTYLHRIGRTGRAGR 341 (434)
T ss_pred EEEEccccccCccCCCCCEEEEECCCC-CHHHHhhcccccccCCC
Confidence 999999999999999999999998775 99999999999999883
No 19
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-36 Score=317.29 Aligned_cols=293 Identities=17% Similarity=0.185 Sum_probs=208.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c------------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..|.|+|.+++..++.+. +.++.+|||+|||++++.++.. + +.++|||+|+++|+.|+.+++..
T Consensus 29 ~~pt~iQ~~aip~il~g~---dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 29 HNCTPIQALALPLTLAGR---DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCHHHHHHHHHHhCCC---cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 478999999999988764 9999999999999998876532 1 13699999999999999999988
Q ss_pred hhCCCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH-
Q 010184 91 WSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK- 164 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~- 164 (516)
+....+..+..+.|+... .+....+|+|+||+.+...... ..+.-..++++|+||||++.+..|..
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--------~~~~l~~v~~lViDEad~l~~~~f~~~ 177 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--------NHINLGAIQVVVLDEADRMFDLGFIKD 177 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcccccccEEEEecHHHHhhcccHHH
Confidence 876666677777766431 2345679999999988553221 11223568899999999998764433
Q ss_pred ---HHhhcc---cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhh
Q 010184 165 ---VISLTK---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (516)
Q Consensus 165 ---~l~~~~---~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~ 238 (516)
++..++ ....+++|||+...-.... ...+..|.......... ....+....
T Consensus 178 i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~-~~~~~~p~~i~v~~~~~----~~~~i~~~~------------------ 234 (423)
T PRK04837 178 IRWLFRRMPPANQRLNMLFSATLSYRVRELA-FEHMNNPEYVEVEPEQK----TGHRIKEEL------------------ 234 (423)
T ss_pred HHHHHHhCCCccceeEEEEeccCCHHHHHHH-HHHCCCCEEEEEcCCCc----CCCceeEEE------------------
Confidence 444443 2346899999863222110 01111222111100000 000000000
Q ss_pred hHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCC
Q 010184 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSR 313 (516)
Q Consensus 239 ~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~ 313 (516)
++.....|...+..++... ...++||||+++..++.++..| ++..+||++++.+|.++++.|+++
T Consensus 235 ------~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g- 304 (423)
T PRK04837 235 ------FYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG- 304 (423)
T ss_pred ------EeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-
Confidence 1111123444555555433 3679999999999999999998 356899999999999999999998
Q ss_pred CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 314 ~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++++||||+++++|||+|++++||+++.|. |...|+||+||++|.|.
T Consensus 305 ~~~vLVaTdv~~rGiDip~v~~VI~~d~P~-s~~~yiqR~GR~gR~G~ 351 (423)
T PRK04837 305 DLDILVATDVAARGLHIPAVTHVFNYDLPD-DCEDYVHRIGRTGRAGA 351 (423)
T ss_pred CCcEEEEechhhcCCCccccCEEEEeCCCC-chhheEeccccccCCCC
Confidence 999999999999999999999999998875 99999999999999994
No 20
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.7e-36 Score=314.32 Aligned_cols=292 Identities=18% Similarity=0.194 Sum_probs=208.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------------CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+|+|+|.++++.++... +.++.+|||+|||++++.++... ..++|||+|+++|+.||.+.+..+
T Consensus 22 ~~pt~iQ~~ai~~il~g~---dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGR---DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 479999999999988764 89999999999999988765321 125999999999999999999998
Q ss_pred hCCCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----
Q 010184 92 STIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---- 162 (516)
Q Consensus 92 ~~~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~---- 162 (516)
.......+..+.|+... .+.+..+|+|+||+.+.....+ ..+....+++||+||||++....|
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--------~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--------NAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--------CCcccccceEEEeecHHHHhccccHHHH
Confidence 76666666666665431 2346689999999988653221 111225678999999999987544
Q ss_pred HHHHhhccc-ceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhH
Q 010184 163 RKVISLTKS-HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (516)
Q Consensus 163 ~~~l~~~~~-~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~ 240 (516)
..++..++. .+.+++|||+...-.. ....++. |......... .....+......
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~~~~~--l~~~~~~~~~~i~~~~~~----~~~~~i~~~~~~------------------ 226 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSDDIKA--LAEKLLHNPLEIEVARRN----TASEQVTQHVHF------------------ 226 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcHHHHH--HHHHHcCCCeEEEEeccc----ccccceeEEEEE------------------
Confidence 445555543 4689999998642211 1111111 2111110000 000000000000
Q ss_pred HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCc
Q 010184 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDL 315 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~ 315 (516)
.....|..++..++.. ....++||||+++..++.++..|. +..+||++++.+|.++++.|+++ ++
T Consensus 227 ------~~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~ 296 (456)
T PRK10590 227 ------VDKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DI 296 (456)
T ss_pred ------cCHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CC
Confidence 0011122344455443 336789999999999999999993 45799999999999999999998 99
Q ss_pred cEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|||||+++++|||+|++++||+++.+. +...|+||+||++|.|.
T Consensus 297 ~iLVaTdv~~rGiDip~v~~VI~~~~P~-~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 297 RVLVATDIAARGLDIEELPHVVNYELPN-VPEDYVHRIGRTGRAAA 341 (456)
T ss_pred cEEEEccHHhcCCCcccCCEEEEeCCCC-CHHHhhhhccccccCCC
Confidence 9999999999999999999999998775 99999999999999984
No 21
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=9.2e-35 Score=325.43 Aligned_cols=342 Identities=21% Similarity=0.295 Sum_probs=233.7
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..+++|+||.+.+...+.+ ++++++|||+|||++++.++... ++++|||||+++|+.||.+.+.++++.+..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~----n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK----NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CcCCccHHHHHHHHHHhcC----CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 3578999999999987765 78999999999999988776443 579999999999999999999999887766
Q ss_pred cEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHHHHh----h
Q 010184 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVIS----L 168 (516)
Q Consensus 98 ~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~----~ 168 (516)
.+..++|+.... .....+|+|+||+.+...... ..+....|++||+||||++.+. .+..++. .
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~~--------~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLIA--------GRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHHc--------CCCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 788888865421 234578999999988653211 1122357899999999998754 3332332 2
Q ss_pred cccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHH----------------
Q 010184 169 TKSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS---------------- 231 (516)
Q Consensus 169 ~~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~---------------- 231 (516)
.+..++++|||||....+....+...++ ..+.-.+..+..-..++.+.....+.+++++....
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l 239 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKL 239 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2345699999999765544332222111 11110000000001122222222222222222100
Q ss_pred -----------------------------------------------------------------HHHHhhhh-------
Q 010184 232 -----------------------------------------------------------------EYLKKENS------- 239 (516)
Q Consensus 232 -----------------------------------------------------------------~~l~~~~~------- 239 (516)
.|+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~ 319 (773)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG 319 (773)
T ss_pred HHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC
Confidence 00000000
Q ss_pred -----------HHHHHH-----hhhCcchHHHHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHhC-----CceEecC-
Q 010184 240 -----------KKKQAL-----YVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGA- 296 (516)
Q Consensus 240 -----------~~~~~l-----~~~~~~k~~~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~- 296 (516)
.....+ ......|+..+..+++... ...+.++||||++..+++.+++.|. +..++|.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~ 399 (773)
T PRK13766 320 SKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQA 399 (773)
T ss_pred cHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccc
Confidence 000000 0112347777777775432 2568899999999999999999992 3457776
Q ss_pred -------CCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccC
Q 010184 297 -------TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 369 (516)
Q Consensus 297 -------~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~ 369 (516)
+++.+|.+++++|+++ .+++||+|+++++|+|+|.+++||++++++ |+..++||+||++|.++
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g-~~~vLvaT~~~~eGldi~~~~~VI~yd~~~-s~~r~iQR~GR~gR~~~-------- 469 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAG-EFNVLVSTSVAEEGLDIPSVDLVIFYEPVP-SEIRSIQRKGRTGRQEE-------- 469 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccCcCCC--------
Confidence 8899999999999998 899999999999999999999999998887 99999999999999883
Q ss_pred CCCceeEEEEEEEcCCchhhhH
Q 010184 370 GKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 370 ~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
+.+|.++..+|.|+.+
T Consensus 470 ------~~v~~l~~~~t~ee~~ 485 (773)
T PRK13766 470 ------GRVVVLIAKGTRDEAY 485 (773)
T ss_pred ------CEEEEEEeCCChHHHH
Confidence 4578899999998843
No 22
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.6e-35 Score=311.78 Aligned_cols=292 Identities=17% Similarity=0.180 Sum_probs=207.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c------------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..++|+|.++++.++.+. +.|+.+|||+|||++++.++.. + ..++|||+|+++|+.|+.+.+..
T Consensus 108 ~~~~~iQ~~ai~~~~~G~---dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAGH---DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 468999999999888764 8999999999999998876532 1 23699999999999999999998
Q ss_pred hhCCCCCcEEEEeCCccc-----c-ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh---
Q 010184 91 WSTIQDDQICRFTSDSKE-----R-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--- 161 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~-~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~--- 161 (516)
+....+..+..+.|+... . ..+..+|+|+|+++|.....+. .+.-..+++||+||+|++....
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--------~~~l~~l~~lViDEah~l~~~~~~~ 256 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--------EVHLDMVEVMVLDEADRMLDMGFIP 256 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CcccccCceEEechHHHHHhcccHH
Confidence 865555667777776321 1 1345799999999985432211 1112567899999999998653
Q ss_pred -HHHHHhhcc---cceEEEEeccCCCCccchhhhHh-hhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHh
Q 010184 162 -FRKVISLTK---SHCKLGLTATLVREDERITDLNF-LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK 236 (516)
Q Consensus 162 -~~~~l~~~~---~~~~l~LTATp~~~~~~~~~l~~-~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~ 236 (516)
+.+++..+. ..+++++|||....-.. .... ...|........... ...... .+
T Consensus 257 ~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~--~~~~~~~~~~~v~~~~~~~~----~~~~~~-~~--------------- 314 (475)
T PRK01297 257 QVRQIIRQTPRKEERQTLLFSATFTDDVMN--LAKQWTTDPAIVEIEPENVA----SDTVEQ-HV--------------- 314 (475)
T ss_pred HHHHHHHhCCCCCCceEEEEEeecCHHHHH--HHHHhccCCEEEEeccCcCC----CCcccE-EE---------------
Confidence 445555543 34789999997532111 1111 122222211100000 000000 00
Q ss_pred hhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhc
Q 010184 237 ENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKC 311 (516)
Q Consensus 237 ~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~ 311 (516)
....+..|...+..++.. ....++||||+++..++.++..|. +..+||++++.+|.++++.|++
T Consensus 315 --------~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~ 383 (475)
T PRK01297 315 --------YAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFRE 383 (475)
T ss_pred --------EEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhC
Confidence 111122344455555543 346799999999999999999883 4579999999999999999999
Q ss_pred CCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 312 ~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+ ++++||||+++++|||+|++++||+++.+. |...|+||+||+||.|.
T Consensus 384 G-~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~-s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 384 G-KIRVLVATDVAGRGIHIDGISHVINFTLPE-DPDDYVHRIGRTGRAGA 431 (475)
T ss_pred C-CCcEEEEccccccCCcccCCCEEEEeCCCC-CHHHHHHhhCccCCCCC
Confidence 8 999999999999999999999999998775 99999999999999984
No 23
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=3.4e-35 Score=312.80 Aligned_cols=294 Identities=16% Similarity=0.157 Sum_probs=206.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-------------cCCCEEEEEeChhhHHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-------------IKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-------------~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..|+|+|.+++..++.+. +.++++|||+|||++++.++.. .+..+|||+|+++|+.|+.+++..
T Consensus 142 ~~ptpiQ~~aip~il~g~---dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 142 EFPTPIQMQAIPAALSGR---SLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 479999999999998654 9999999999999999876532 124699999999999999999988
Q ss_pred hhCCCCCcEEEEeCCcc-c----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH--
Q 010184 91 WSTIQDDQICRFTSDSK-E----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~-~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~-- 163 (516)
+....+..+....|+.. . .+....+|+|+||+.+.....+. .+......+||+||||++....|.
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--------~~~l~~v~~lViDEad~ml~~gf~~~ 290 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--------DIELDNVSVLVLDEVDCMLERGFRDQ 290 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CccchheeEEEeecHHHHhhcchHHH
Confidence 76444444444444322 1 23456899999999886543221 112256789999999999876554
Q ss_pred --HHHhhcccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhH
Q 010184 164 --KVISLTKSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (516)
Q Consensus 164 --~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~ 240 (516)
+++..++..+.+++|||....-.... ..+.. +........ ......+....++++
T Consensus 291 i~~i~~~l~~~q~l~~SATl~~~v~~l~--~~~~~~~~~i~~~~~----~~~~~~v~q~~~~~~---------------- 348 (518)
T PLN00206 291 VMQIFQALSQPQVLLFSATVSPEVEKFA--SSLAKDIILISIGNP----NRPNKAVKQLAIWVE---------------- 348 (518)
T ss_pred HHHHHHhCCCCcEEEEEeeCCHHHHHHH--HHhCCCCEEEEeCCC----CCCCcceeEEEEecc----------------
Confidence 45566667789999999975332211 11111 111110000 000001111122221
Q ss_pred HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC------CceEecCCCHHHHHHHHHHHhcCCC
Q 010184 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
...|...+..++.... ....++||||+++..++.++..|. +..+||++++.+|.++++.|+++ +
T Consensus 349 --------~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~ 418 (518)
T PLN00206 349 --------TKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-E 418 (518)
T ss_pred --------chhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-C
Confidence 1112223344444333 334689999999999999998873 44699999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|||||+++++|||+|++++||+++.|. +...|+||+||+||.|.
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~-s~~~yihRiGRaGR~g~ 464 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPN-TIKEYIHQIGRASRMGE 464 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCC-CHHHHHHhccccccCCC
Confidence 99999999999999999999999998775 99999999999999983
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=2e-35 Score=311.83 Aligned_cols=291 Identities=16% Similarity=0.153 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
.+|+|+|.++++.++.+. +.++.+|||+|||++++.++... ...+||+||+++|+.||.+++..+... +.
T Consensus 25 ~~~t~iQ~~ai~~~l~g~---dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 25 TEMTPIQAQSLPAILAGK---DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 369999999999988764 89999999999999987766432 236999999999999999999987532 34
Q ss_pred CcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----HHHHh
Q 010184 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~ 167 (516)
..+..++|+... .+....+|+|+||+.+.....+. .+.-..+++||+||||++....| ..++.
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--------~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~ 173 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--------TLDLDALNTLVLDEADRMLDMGFQDAIDAIIR 173 (460)
T ss_pred cEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--------CccHHHCCEEEEECHHHHhCcCcHHHHHHHHH
Confidence 567777776432 23467899999999886543221 11125678999999999887644 34444
Q ss_pred hcc-cceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHH
Q 010184 168 LTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l 245 (516)
.++ ..+.+++|||+...-.. ....++. |....... ......+....+.+
T Consensus 174 ~~~~~~q~ll~SAT~~~~~~~--l~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~---------------------- 224 (460)
T PRK11776 174 QAPARRQTLLFSATYPEGIAA--ISQRFQRDPVEVKVES-----THDLPAIEQRFYEV---------------------- 224 (460)
T ss_pred hCCcccEEEEEEecCcHHHHH--HHHHhcCCCEEEEECc-----CCCCCCeeEEEEEe----------------------
Confidence 443 34679999999642221 1111111 21111100 00011111111111
Q ss_pred hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEE
Q 010184 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (516)
Q Consensus 246 ~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~ 320 (516)
.+..|...+..++..+ .+.++||||+++..++.+++.| ++..+||++++.+|..+++.|+++ .+++|||
T Consensus 225 --~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVa 298 (460)
T PRK11776 225 --SPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVA 298 (460)
T ss_pred --CcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 1112344555666543 3678999999999999999999 356799999999999999999997 9999999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+++++|+|+|++++||+++.+. ++..|+||+||++|.|.
T Consensus 299 Tdv~~rGiDi~~v~~VI~~d~p~-~~~~yiqR~GRtGR~g~ 338 (460)
T PRK11776 299 TDVAARGLDIKALEAVINYELAR-DPEVHVHRIGRTGRAGS 338 (460)
T ss_pred ecccccccchhcCCeEEEecCCC-CHhHhhhhcccccCCCC
Confidence 99999999999999999997774 99999999999999884
No 25
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-35 Score=314.00 Aligned_cols=134 Identities=19% Similarity=0.280 Sum_probs=121.9
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEE-EEeC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI-FLSK 322 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vL-v~t~ 322 (516)
+.+|++.+.-|++.+. ..|+++|||+++..+++.|..+|+ +..++|.++.++|+.+.++|+.+..+-+. ++|.
T Consensus 1258 DcGKLQtLAiLLqQLk-~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLK-SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred ccchHHHHHHHHHHHH-hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 3478888999998888 889999999999999999999996 34589999999999999999998666554 4589
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHH
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r 395 (516)
.|+.||||..||+||+|++.| |+.-.+|+..||||+| |.+++.+|+||+..|+|+.+-++.
T Consensus 1337 SggvGiNLtgADTVvFYDsDw-NPtMDaQAQDrChRIG-----------qtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIG-----------QTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCccccccccCceEEEecCCC-CchhhhHHHHHHHhhc-----------CccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999998 9999999999999999 888999999999999999988776
No 26
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=6.2e-35 Score=307.91 Aligned_cols=286 Identities=17% Similarity=0.187 Sum_probs=206.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
..+||+|.++++.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.|+.+.+..+ ++ .+..++
T Consensus 10 ~~~r~~Q~~ai~~~l~g~---dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~-gi---~~~~l~ 82 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGR---DCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKAS-GI---PATFLN 82 (470)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHc-CC---cEEEEe
Confidence 379999999999998765 89999999999999999888777889999999999999999999875 33 355555
Q ss_pred CCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHH-ccCCccEEEEccCccCCch------hHHH---
Q 010184 104 SDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH------MFRK--- 164 (516)
Q Consensus 104 ~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~------~~~~--- 164 (516)
++.... ..+..+|+++||+.+.... .....+ ....+++||+||||++... .+..
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~-------~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASN-------RLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCch-------hHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 553321 1355789999999986531 123333 3578899999999998642 2222
Q ss_pred HHhhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 165 VISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
+...++...+++||||+...... ++...++ |..+..+ +-.+.....+....
T Consensus 156 l~~~~~~~~~l~lTAT~~~~~~~--di~~~l~l~~~~~~~~s--------~~r~nl~~~v~~~~---------------- 209 (470)
T TIGR00614 156 LKQKFPNVPIMALTATASPSVRE--DILRQLNLKNPQIFCTS--------FDRPNLYYEVRRKT---------------- 209 (470)
T ss_pred HHHHcCCCceEEEecCCCHHHHH--HHHHHcCCCCCcEEeCC--------CCCCCcEEEEEeCC----------------
Confidence 33344566789999999753221 2222222 2222111 00000000110000
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCcc
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLN 316 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~ 316 (516)
......+..++... .++.++||||+++..++.++..| .+..+||++++++|.++++.|+++ +++
T Consensus 210 --------~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~ 278 (470)
T TIGR00614 210 --------PKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQ 278 (470)
T ss_pred --------ccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCc
Confidence 01111122222211 35778899999999999999998 356799999999999999999997 999
Q ss_pred EEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 317 vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|||||+++++|||+|++++||+++.|. |...|.||+||+||.|.
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P~-s~~~y~Qr~GRaGR~G~ 322 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLPK-SMESYYQESGRAGRDGL 322 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCCC-CHHHHHhhhcCcCCCCC
Confidence 999999999999999999999997774 99999999999999984
No 27
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3e-35 Score=299.95 Aligned_cols=298 Identities=19% Similarity=0.249 Sum_probs=217.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH-hc----------CC-CEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI----------KK-SCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~----------~~-~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..|.|.|..+..-++.+. +++..+.||+|||+.++.++- ++ +. .+|||+||++|+.|..+++..+
T Consensus 112 ~~PtpIQaq~wp~~l~Gr---D~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALSGR---DLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCCchhhhcccceeccCC---ceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 479999999999777764 999999999999999987651 11 12 4999999999999999999999
Q ss_pred hCCCCCcE-EEEeCCccc----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hH
Q 010184 92 STIQDDQI-CRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (516)
Q Consensus 92 ~~~~~~~v-~~~~~~~~~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~ 162 (516)
..-..... +++.|..+. .+....+|+|+||+.+....+.. .+......++|+|||+++... ..
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g--------~~~l~~v~ylVLDEADrMldmGFe~qI 260 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG--------SLNLSRVTYLVLDEADRMLDMGFEPQI 260 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC--------CccccceeEEEeccHHhhhccccHHHH
Confidence 76555444 444444332 24567899999999885543221 122256789999999999976 45
Q ss_pred HHHHhhc-ccc-eEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhH
Q 010184 163 RKVISLT-KSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (516)
Q Consensus 163 ~~~l~~~-~~~-~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~ 240 (516)
++++..+ +.. +.|+.|||-+.+-...+. .++-.|.... +.... +.. .....
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~~lA~-~fl~~~~~i~---------------------ig~~~----~~~-a~~~i 313 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVRQLAE-DFLNNPIQIN---------------------VGNKK----ELK-ANHNI 313 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHHHHHH-HHhcCceEEE---------------------ecchh----hhh-hhcch
Confidence 5677777 333 489999998754333211 0011111111 10000 000 11122
Q ss_pred HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCc
Q 010184 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDL 315 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~ 315 (516)
.+....+....|...+..++.......+.|+||||+++..++.++..|. +..|||+.++.+|..+++.|+++ +.
T Consensus 314 ~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~~ 392 (519)
T KOG0331|consen 314 RQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-KS 392 (519)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-Cc
Confidence 2222333345566777777765543567799999999999999999884 45799999999999999999998 99
Q ss_pred cEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.|||||+++++|||+|++++||++++| .+...|+||+||++|+|.
T Consensus 393 ~vLVATdVAaRGLDi~dV~lVInydfP-~~vEdYVHRiGRTGRa~~ 437 (519)
T KOG0331|consen 393 PVLVATDVAARGLDVPDVDLVINYDFP-NNVEDYVHRIGRTGRAGK 437 (519)
T ss_pred ceEEEcccccccCCCccccEEEeCCCC-CCHHHHHhhcCccccCCC
Confidence 999999999999999999999999887 599999999999999884
No 28
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.3e-35 Score=314.99 Aligned_cols=293 Identities=15% Similarity=0.118 Sum_probs=209.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c------------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..++|.|.+++..++.+. +.++.+|||+|||++++.++.. + ..++|||+|+++|+.|+.+.+.+
T Consensus 30 ~~ptpiQ~~~ip~~l~G~---Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 30 TRCTPIQALTLPVALPGG---DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 479999999999988765 8999999999999999886632 1 14799999999999999999999
Q ss_pred hhCCCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH--
Q 010184 91 WSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~-- 163 (516)
|.......+..++|+... .+....+|+|+|++.|....++. ..+....+++|||||||++....|.
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-------~~~~l~~v~~lViDEAh~lld~gf~~~ 179 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-------KVVSLHACEICVLDEADRMFDLGFIKD 179 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-------cccchhheeeeEecCHHHHhhcchHHH
Confidence 876556677777776432 13456789999999886542211 0112245679999999998865443
Q ss_pred --HHHhhcc---cceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhh
Q 010184 164 --KVISLTK---SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (516)
Q Consensus 164 --~~l~~~~---~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~ 237 (516)
.++..++ ..+.+++|||+...-.. .....+. |......... .....+... +..
T Consensus 180 i~~il~~lp~~~~~q~ll~SATl~~~v~~--l~~~~l~~p~~i~v~~~~----~~~~~i~q~-~~~-------------- 238 (572)
T PRK04537 180 IRFLLRRMPERGTRQTLLFSATLSHRVLE--LAYEHMNEPEKLVVETET----ITAARVRQR-IYF-------------- 238 (572)
T ss_pred HHHHHHhcccccCceEEEEeCCccHHHHH--HHHHHhcCCcEEEecccc----ccccceeEE-EEe--------------
Confidence 3444444 35689999998642111 1111111 1111000000 000000000 000
Q ss_pred hhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcC
Q 010184 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCS 312 (516)
Q Consensus 238 ~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~ 312 (516)
.....|...+..++.. ..+.++||||+++..++.+++.| .+..+||++++.+|.++++.|+++
T Consensus 239 ---------~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G 306 (572)
T PRK04537 239 ---------PADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306 (572)
T ss_pred ---------cCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 0111233344444433 34789999999999999999999 366899999999999999999997
Q ss_pred CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 313 ~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++|||||+++++|||+|++++||+++.++ +...|+||+||++|.|.
T Consensus 307 -~~~VLVaTdv~arGIDip~V~~VInyd~P~-s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 307 -QLEILVATDVAARGLHIDGVKYVYNYDLPF-DAEDYVHRIGRTARLGE 353 (572)
T ss_pred -CCeEEEEehhhhcCCCccCCCEEEEcCCCC-CHHHHhhhhcccccCCC
Confidence 999999999999999999999999998775 99999999999999984
No 29
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=6.4e-34 Score=280.11 Aligned_cols=351 Identities=18% Similarity=0.226 Sum_probs=243.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
..|.|||.+++...++.+ ++++|+++||+|||++|++++... ..|.|||||.+ +...|.+++.+|+..-. .|.+
T Consensus 197 s~LlPFQreGv~faL~Rg--GR~llADeMGLGKTiQAlaIA~yyraEwplliVcPAs-vrftWa~al~r~lps~~-pi~v 272 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERG--GRILLADEMGLGKTIQALAIARYYRAEWPLLIVCPAS-VRFTWAKALNRFLPSIH-PIFV 272 (689)
T ss_pred HhhCchhhhhHHHHHhcC--CeEEEecccccchHHHHHHHHHHHhhcCcEEEEecHH-HhHHHHHHHHHhccccc-ceEE
Confidence 368999999999998876 499999999999999999988543 47999999977 58889999999986543 2555
Q ss_pred EeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH---HHHhhc-ccceEE
Q 010184 102 FTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR---KVISLT-KSHCKL 175 (516)
Q Consensus 102 ~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~---~~l~~~-~~~~~l 175 (516)
+.+..... +.....|.|.+|+++.. +.+.+...+|++||+||+|++++..-. .++..+ .+.+.|
T Consensus 273 v~~~~D~~~~~~t~~~v~ivSye~ls~----------l~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 273 VDKSSDPLPDVCTSNTVAIVSYEQLSL----------LHDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVI 342 (689)
T ss_pred EecccCCccccccCCeEEEEEHHHHHH----------HHHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheE
Confidence 55443321 23457799999999955 345566678999999999999975322 222222 356789
Q ss_pred EEeccCCCCc--cc---hhhhHhhhCCccccc-------------------------------------cHHHHHhCCCc
Q 010184 176 GLTATLVRED--ER---ITDLNFLIGPKLYEA-------------------------------------NWLDLVKGGFI 213 (516)
Q Consensus 176 ~LTATp~~~~--~~---~~~l~~~~gp~~~~~-------------------------------------~~~~l~~~g~l 213 (516)
+|||||.-.. +. +..+...++|..++. ...++. +.+
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL--~qL 420 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVL--KQL 420 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHH--hhC
Confidence 9999996322 11 112222233322211 111111 223
Q ss_pred cccee-EEEeccCCHHH-HHHHHH------hhhhHHHH---HH--hh-hCcchHH-HHHHHHH--HHhhcCCCeEEEEec
Q 010184 214 ANVQC-AEVWCPMTKEF-FSEYLK------KENSKKKQ---AL--YV-MNPNKFR-ACEFLIR--FHEQQRGDKIIVFAD 276 (516)
Q Consensus 214 ~~~~~-~~v~~~~~~~~-~~~~l~------~~~~~~~~---~l--~~-~~~~k~~-~~~~ll~--~~~~~~~~k~iVF~~ 276 (516)
++.+- ..+.++-...- ....+. ......+. ++ +. ..-.|.. .+++|+. +....++.|.+|||.
T Consensus 421 PpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaH 500 (689)
T KOG1000|consen 421 PPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAH 500 (689)
T ss_pred CccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEeh
Confidence 33322 22222222111 111110 00111110 01 00 1112333 4555554 122378899999999
Q ss_pred cHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEE-eCCCcccccccccCEEEEecCCCCCHHHHH
Q 010184 277 NLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEA 350 (516)
Q Consensus 277 ~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~-t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~ 350 (516)
....++.+...++ ...|+|.++..+|....+.|+.+++++|-|. ..+++.|+++..+++||+..-+| ||..++
T Consensus 501 H~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w-nPgvLl 579 (689)
T KOG1000|consen 501 HQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW-NPGVLL 579 (689)
T ss_pred hHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC-CCceEE
Confidence 9999999999883 3469999999999999999999988888665 58999999999999999987777 999999
Q ss_pred HHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHc
Q 010184 351 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402 (516)
Q Consensus 351 Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~ 402 (516)
|+.+|+||+| |...+++|.|+.++|.++++...-+++|.-.
T Consensus 580 QAEDRaHRiG-----------QkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl 620 (689)
T KOG1000|consen 580 QAEDRAHRIG-----------QKSSVFVQYLVAKGTADDYMWPMLQQKLDVL 620 (689)
T ss_pred echhhhhhcc-----------ccceeeEEEEEecCchHHHHHHHHHHHHHHH
Confidence 9999999999 7888999999999999999998888888643
No 30
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=7e-34 Score=320.46 Aligned_cols=325 Identities=18% Similarity=0.209 Sum_probs=218.7
Q ss_pred CCCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
.+.|||||.+|++.+... ...+++++++|||+|||++++.++..+ .+++|+|||+.+|+.||.++|..+. .+
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~-~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK-IE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc-cc
Confidence 468999999999877642 123589999999999999998877543 2689999999999999999999873 22
Q ss_pred CC-cEE-EEe--CCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc------------
Q 010184 96 DD-QIC-RFT--SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------------ 159 (516)
Q Consensus 96 ~~-~v~-~~~--~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------------ 159 (516)
.. .+. .+. +-..........|+|+|++.+.+......+ ....+....+++||+||||+..+
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~---~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDD---PMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhcccc---ccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 21 111 111 101111234578999999988654211100 00112235788999999999752
Q ss_pred -------hhHHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccc----eeEEEe----cc
Q 010184 160 -------HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANV----QCAEVW----CP 224 (516)
Q Consensus 160 -------~~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~----~~~~v~----~~ 224 (516)
..|++++..+. ..+|||||||.+. ...+||..+|.++..++++.|+++++ .+.... ..
T Consensus 567 ~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~------t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~ 639 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD-AVKIGLTATPALH------TTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIH 639 (1123)
T ss_pred chhhhHHHHHHHHHhhcC-ccEEEEecCCccc------hhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccc
Confidence 47788888775 4689999999853 24678888999999999999999843 222110 00
Q ss_pred CC-HHHHHHHHH-------h-hhhH-----HHHHHhhhCcchH-HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC
Q 010184 225 MT-KEFFSEYLK-------K-ENSK-----KKQALYVMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289 (516)
Q Consensus 225 ~~-~~~~~~~l~-------~-~~~~-----~~~~l~~~~~~k~-~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~ 289 (516)
.. .+....|.. . .... ....-.+.++... .++..++++.....+.|+||||.++.+++.+.+.|+
T Consensus 640 ~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~ 719 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLK 719 (1123)
T ss_pred ccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHH
Confidence 00 110000000 0 0000 0000001112111 245556654432334799999999999998877652
Q ss_pred --------------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhc
Q 010184 290 --------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355 (516)
Q Consensus 290 --------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR 355 (516)
+..++|+++ ++.+++++|+++...+|+|+++++++|+|+|.+++||++.+. .|...|.|++||
T Consensus 720 ~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpv-kS~~lf~QmIGR 796 (1123)
T PRK11448 720 EAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV-RSRILYEQMLGR 796 (1123)
T ss_pred HHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCC-CCHHHHHHHHhh
Confidence 124788876 578899999997334788999999999999999999999665 699999999999
Q ss_pred ccccCC
Q 010184 356 ILRAKG 361 (516)
Q Consensus 356 ~~R~g~ 361 (516)
+.|..+
T Consensus 797 gtR~~~ 802 (1123)
T PRK11448 797 ATRLCP 802 (1123)
T ss_pred hccCCc
Confidence 999886
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2.8e-34 Score=298.40 Aligned_cols=293 Identities=17% Similarity=0.150 Sum_probs=203.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|+|+|.++++.++.+. +.++.+|||+|||++++.++... +.++|||+|+++|+.|+.+.+..+......
T Consensus 49 ~~~~~~Q~~ai~~i~~~~---d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDGY---DTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 369999999999988765 89999999999999988765332 357999999999999999988887655444
Q ss_pred cEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHHhh
Q 010184 98 QICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (516)
Q Consensus 98 ~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~ 168 (516)
.+....|+.. +.+....+|+|+|++.+.....+. .+....+++||+||+|++....|. .++..
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR--------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKK 197 (401)
T ss_pred eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC--------CcccccccEEEEecHHHHHhcchHHHHHHHHhh
Confidence 5555555432 112345789999999885532211 122367899999999998876544 33444
Q ss_pred cc-cceEEEEeccCCCCccchhhhHhh-hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHh
Q 010184 169 TK-SHCKLGLTATLVREDERITDLNFL-IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~~~~~~~~l~~~-~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~ 246 (516)
+. ..+.+++|||+...-.. ....+ ..|........+. .+.......+.+ ....
T Consensus 198 ~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~----------------- 252 (401)
T PTZ00424 198 LPPDVQVALFSATMPNEILE--LTTKFMRDPKRILVKKDEL----TLEGIRQFYVAV--EKEE----------------- 252 (401)
T ss_pred CCCCcEEEEEEecCCHHHHH--HHHHHcCCCEEEEeCCCCc----ccCCceEEEEec--ChHH-----------------
Confidence 33 34689999998642111 11111 1121110000000 011111111111 1100
Q ss_pred hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010184 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t 321 (516)
.+...+..++.. ....++||||+++..++.++..| ++..+||++++.+|..+++.|+++ +++|||||
T Consensus 253 ----~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLvaT 324 (401)
T PTZ00424 253 ----WKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLITT 324 (401)
T ss_pred ----HHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEEc
Confidence 011223333332 33678999999999999999988 356799999999999999999997 99999999
Q ss_pred CCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 322 ~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++++|+|+|++++||+++.+. |...|+||+||++|.|.
T Consensus 325 ~~l~~GiDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 325 DLLARGIDVQQVSLVINYDLPA-SPENYIHRIGRSGRFGR 363 (401)
T ss_pred ccccCCcCcccCCEEEEECCCC-CHHHEeecccccccCCC
Confidence 9999999999999999998775 99999999999999883
No 32
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.2e-34 Score=309.13 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=206.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c-----CCCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
.+|+|+|.+++..++.+. +.|+.+|||+|||++++.++.. + ...+|||||+++|+.||.+++..|... ..
T Consensus 27 ~~ptpiQ~~ai~~ll~g~---dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGR---DVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 479999999999988764 8999999999999998765532 2 236999999999999999999987643 34
Q ss_pred CcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHHh
Q 010184 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~ 167 (516)
..+..++++... .+....+|+|+|++.+.....+. .+.-..+.+|||||||.+....|. .++.
T Consensus 104 i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~--------~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG--------TLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred ceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 556656555431 13456899999999885533221 122256789999999998876554 3444
Q ss_pred hcc-cceEEEEeccCCCCccchhhhHhhh-CCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHH
Q 010184 168 LTK-SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~~~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l 245 (516)
.++ ..+.+++|||+...-... ...++ .|...... ............++
T Consensus 176 ~lp~~~q~llfSAT~p~~i~~i--~~~~l~~~~~i~i~------~~~~~~~~i~q~~~---------------------- 225 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIRRI--TRRFMKEPQEVRIQ------SSVTTRPDISQSYW---------------------- 225 (629)
T ss_pred hCCCCCeEEEEEccCChhHHHH--HHHHcCCCeEEEcc------CccccCCceEEEEE----------------------
Confidence 443 356799999986432211 11111 12111100 00000000000000
Q ss_pred hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEE
Q 010184 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (516)
Q Consensus 246 ~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~ 320 (516)
......|...+..++... ...++||||+++..++.++..|. +..+||++++.+|.+++++|+++ +++||||
T Consensus 226 ~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILVA 301 (629)
T PRK11634 226 TVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILIA 301 (629)
T ss_pred EechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEEE
Confidence 011112334555555433 35789999999999999999983 56799999999999999999998 9999999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+++++|||+|++++||+++.|. +...|+||+||++|.|.
T Consensus 302 Tdv~arGIDip~V~~VI~~d~P~-~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 302 TDVAARGLDVERISLVVNYDIPM-DSESYVHRIGRTGRAGR 341 (629)
T ss_pred cchHhcCCCcccCCEEEEeCCCC-CHHHHHHHhccccCCCC
Confidence 99999999999999999998875 99999999999999994
No 33
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.3e-33 Score=305.52 Aligned_cols=282 Identities=18% Similarity=0.228 Sum_probs=205.4
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~ 104 (516)
++||+|.++++.++.+. ++++++|||+|||+++..++....+.+|||+|+++|+.|+.+.|... ++ .+..+.+
T Consensus 25 ~~r~~Q~~ai~~il~g~---dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~-gi---~~~~~~s 97 (607)
T PRK11057 25 QFRPGQQEIIDAVLSGR---DCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLAN-GV---AAACLNS 97 (607)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHc-CC---cEEEEcC
Confidence 79999999999988764 89999999999999999888877889999999999999999999875 33 3444444
Q ss_pred Ccccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hHH---HHH
Q 010184 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR---KVI 166 (516)
Q Consensus 105 ~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~---~~l 166 (516)
..... ..+...++++||+.+.. ..+...+....++++|+||||++... .+. .+.
T Consensus 98 ~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~--------~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~ 169 (607)
T PRK11057 98 TQTREQQLEVMAGCRTGQIKLLYIAPERLMM--------DNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLR 169 (607)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEChHHhcC--------hHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHH
Confidence 42211 13557899999998864 23445555567899999999998742 222 223
Q ss_pred hhcccceEEEEeccCCCCccchhhhHhhh---CCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHH
Q 010184 167 SLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (516)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~~~l~~~~---gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 243 (516)
..++...+++||||+...... ++...+ .|..+..... -.+..+..+
T Consensus 170 ~~~p~~~~v~lTAT~~~~~~~--di~~~l~l~~~~~~~~~~~-------r~nl~~~v~---------------------- 218 (607)
T PRK11057 170 QRFPTLPFMALTATADDTTRQ--DIVRLLGLNDPLIQISSFD-------RPNIRYTLV---------------------- 218 (607)
T ss_pred HhCCCCcEEEEecCCChhHHH--HHHHHhCCCCeEEEECCCC-------CCcceeeee----------------------
Confidence 344556789999999754321 222222 1221110000 000000000
Q ss_pred HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEE
Q 010184 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (516)
Q Consensus 244 ~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vL 318 (516)
....+ +..++.+.....+.++||||+++..++.++..|+ +..+||++++++|.++++.|+.+ .++||
T Consensus 219 ----~~~~~---~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~VL 290 (607)
T PRK11057 219 ----EKFKP---LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQIV 290 (607)
T ss_pred ----eccch---HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCEE
Confidence 00011 1222333222457899999999999999999983 56799999999999999999997 99999
Q ss_pred EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 319 v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+|+++++|||+|++++||+++.|. |...|.|++||+||.|.
T Consensus 291 VaT~a~~~GIDip~V~~VI~~d~P~-s~~~y~Qr~GRaGR~G~ 332 (607)
T PRK11057 291 VATVAFGMGINKPNVRFVVHFDIPR-NIESYYQETGRAGRDGL 332 (607)
T ss_pred EEechhhccCCCCCcCEEEEeCCCC-CHHHHHHHhhhccCCCC
Confidence 9999999999999999999998775 99999999999999985
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.1e-32 Score=302.72 Aligned_cols=333 Identities=15% Similarity=0.160 Sum_probs=222.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.+|+|+|.++++.++.+. +.++.+|||+|||++++.++.. + +.++|||+|+++|+.|..+++.++. ..+..
T Consensus 35 ~~p~~~Q~~ai~~il~G~---nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~ 110 (742)
T TIGR03817 35 HRPWQHQARAAELAHAGR---HVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVR 110 (742)
T ss_pred CcCCHHHHHHHHHHHCCC---CEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeE
Confidence 379999999999887664 8999999999999999877632 2 3479999999999999999999985 34557
Q ss_pred EEEEeCCccc----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhc--
Q 010184 99 ICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT-- 169 (516)
Q Consensus 99 v~~~~~~~~~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~-- 169 (516)
+..++|+... .+...++|+|+||+++....-..+ .+....+ ...++||+||+|.+... .+..++..+
T Consensus 111 v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~--~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL~r 186 (742)
T TIGR03817 111 PATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSH--ARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRLRR 186 (742)
T ss_pred EEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccch--hHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHHHH
Confidence 7888887542 234568999999999964322211 1112223 56789999999998642 222222222
Q ss_pred -----c-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHH
Q 010184 170 -----K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (516)
Q Consensus 170 -----~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 243 (516)
+ ..+++++|||...... ....++|...... ...+-.........|.+...+ .........+
T Consensus 187 i~~~~g~~~q~i~~SATi~n~~~---~~~~l~g~~~~~i-----~~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~r- 253 (742)
T TIGR03817 187 LCARYGASPVFVLASATTADPAA---AASRLIGAPVVAV-----TEDGSPRGARTVALWEPPLTE----LTGENGAPVR- 253 (742)
T ss_pred HHHhcCCCCEEEEEecCCCCHHH---HHHHHcCCCeEEE-----CCCCCCcCceEEEEecCCccc----cccccccccc-
Confidence 1 3578999999875432 2334454322111 011111111111222221000 0000000000
Q ss_pred HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-------------CCceEecCCCHHHHHHHHHHHh
Q 010184 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------RKPMIYGATSHVERTKILQAFK 310 (516)
Q Consensus 244 ~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------------~~~~i~g~~~~~eR~~~l~~F~ 310 (516)
......+...+..++ ..+.++||||+++..++.++..| ++..+||++++++|.+++++|+
T Consensus 254 --~~~~~~~~~~l~~l~-----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 254 --RSASAEAADLLADLV-----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred --cchHHHHHHHHHHHH-----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH
Confidence 000011223444444 23679999999999999998865 2457899999999999999999
Q ss_pred cCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhh
Q 010184 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (516)
Q Consensus 311 ~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~ 390 (516)
++ ++++||||+++++|||+|++++||+++.| ++...|+||+||+||.|. . ...+.+++.+..|.+
T Consensus 327 ~G-~i~vLVaTd~lerGIDI~~vd~VI~~~~P-~s~~~y~qRiGRaGR~G~-----------~--g~ai~v~~~~~~d~~ 391 (742)
T TIGR03817 327 DG-ELLGVATTNALELGVDISGLDAVVIAGFP-GTRASLWQQAGRAGRRGQ-----------G--ALVVLVARDDPLDTY 391 (742)
T ss_pred cC-CceEEEECchHhccCCcccccEEEEeCCC-CCHHHHHHhccccCCCCC-----------C--cEEEEEeCCChHHHH
Confidence 98 99999999999999999999999999776 599999999999999884 2 344556666666666
Q ss_pred HHHHHHHHH
Q 010184 391 YSTKRQQFL 399 (516)
Q Consensus 391 ~~~~r~~~l 399 (516)
+....+.++
T Consensus 392 ~~~~~~~~~ 400 (742)
T TIGR03817 392 LVHHPEALF 400 (742)
T ss_pred HHhCHHHHh
Confidence 555444444
No 35
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=6.5e-33 Score=282.85 Aligned_cols=366 Identities=18% Similarity=0.218 Sum_probs=258.0
Q ss_pred CCCCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhcC-------------CCEEEEEeChhhHHHHHH
Q 010184 22 PHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRIK-------------KSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~~-------------~~~Lvl~P~~~L~~Qw~~ 86 (516)
....|-|||+.++.||... ..+..||+.+++|.|||+..++++...+ .++|||||-+ |+.||..
T Consensus 322 ~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~ 400 (901)
T KOG4439|consen 322 LKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEA 400 (901)
T ss_pred ceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHH
Confidence 3468999999999998754 4567899999999999999988874321 2599999966 7999999
Q ss_pred HHHHhhCCCCCcEEEEeCCcccccc----CCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--
Q 010184 87 QFKLWSTIQDDQICRFTSDSKERFR----GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-- 160 (516)
Q Consensus 87 e~~~~~~~~~~~v~~~~~~~~~~~~----~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-- 160 (516)
|+.+...-+...|..|+|..+.... ..++||||||..+........+.......|....|.-||+||||.+.++
T Consensus 401 Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~t 480 (901)
T KOG4439|consen 401 EVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSNT 480 (901)
T ss_pred HHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccch
Confidence 9999887788899999999853322 4689999999999872211111111223444678999999999999986
Q ss_pred hHHHHHhhcccceEEEEeccCCCCccc--hhhhHhh-----------------------------hCCccccccHHHHHh
Q 010184 161 MFRKVISLTKSHCKLGLTATLVREDER--ITDLNFL-----------------------------IGPKLYEANWLDLVK 209 (516)
Q Consensus 161 ~~~~~l~~~~~~~~l~LTATp~~~~~~--~~~l~~~-----------------------------~gp~~~~~~~~~l~~ 209 (516)
.-...+..+.++++.+|||||++++.- ...+.++ ..+...+.+...+..
T Consensus 481 q~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll~K~LmLRRTKdQl~a 560 (901)
T KOG4439|consen 481 QCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLLTKSLMLRRTKDQLQA 560 (901)
T ss_pred hHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhhhhhHHhhhhHHhhcc
Confidence 344556667899999999999987632 1122221 112223333444443
Q ss_pred CCCc---ccceeEEEeccCCHHHHH--------------HHHHhhhhHH--------------------------H----
Q 010184 210 GGFI---ANVQCAEVWCPMTKEFFS--------------EYLKKENSKK--------------------------K---- 242 (516)
Q Consensus 210 ~g~l---~~~~~~~v~~~~~~~~~~--------------~~l~~~~~~~--------------------------~---- 242 (516)
.|-+ ....+......++.+... .|+.....+. +
T Consensus 561 ~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~aa 640 (901)
T KOG4439|consen 561 NGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLAA 640 (901)
T ss_pred ccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhhc
Confidence 3333 334444445555544322 2221100000 0
Q ss_pred --------HHHh--------hh----------------------------------------------------------
Q 010184 243 --------QALY--------VM---------------------------------------------------------- 248 (516)
Q Consensus 243 --------~~l~--------~~---------------------------------------------------------- 248 (516)
.++. ++
T Consensus 641 gsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~q 720 (901)
T KOG4439|consen 641 GSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPDQ 720 (901)
T ss_pred CCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchhh
Confidence 0000 00
Q ss_pred ------CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcC-CCcc
Q 010184 249 ------NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS-RDLN 316 (516)
Q Consensus 249 ------~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~-~~~~ 316 (516)
.+-|...+..+++.......+|++|.++.+..+..+...++ ...++|.....+|+.+++.|+.. +..+
T Consensus 721 ~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~r 800 (901)
T KOG4439|consen 721 AFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGAR 800 (901)
T ss_pred hcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCce
Confidence 11133333333322212567899999999999999999984 44699999999999999999987 3477
Q ss_pred EEEEe-CCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHH
Q 010184 317 TIFLS-KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (516)
Q Consensus 317 vLv~t-~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r 395 (516)
|++.+ .+||.|+||..++++|+++-|| ||+.+.|+..|+.|.| |.+.+++|+++..+|+|..+....
T Consensus 801 VmLlSLtAGGVGLNL~GaNHlilvDlHW-NPaLEqQAcDRIYR~G-----------QkK~V~IhR~~~~gTvEqrV~~LQ 868 (901)
T KOG4439|consen 801 VMLLSLTAGGVGLNLIGANHLILVDLHW-NPALEQQACDRIYRMG-----------QKKDVFIHRLMCKGTVEQRVKSLQ 868 (901)
T ss_pred EEEEEEccCcceeeecccceEEEEeccc-CHHHHHHHHHHHHHhc-----------ccCceEEEEEEecCcHHHHHHHHH
Confidence 76664 8999999999999999999998 9999999999999999 888999999999999999887776
Q ss_pred HHHHH
Q 010184 396 QQFLI 400 (516)
Q Consensus 396 ~~~l~ 400 (516)
..++.
T Consensus 869 dkKld 873 (901)
T KOG4439|consen 869 DKKLD 873 (901)
T ss_pred HHHHH
Confidence 66663
No 36
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=1.3e-32 Score=305.24 Aligned_cols=317 Identities=19% Similarity=0.196 Sum_probs=216.3
Q ss_pred CCCCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 21 KPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
...++|+|+|.+|++.++.. +++.+.++++|||+|||.+++.++.. .+++++|++||++|+.|+.+.|.+++.-
T Consensus 447 ~~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 447 SFPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred hCCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 34568999999999998764 33357899999999999998876532 3678999999999999999999998655
Q ss_pred CCCcEEEEeCCcccc--------c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHH
Q 010184 95 QDDQICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~--------~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (516)
.+..+..+++..... + .+..+|+|+|+..+... +.-.+.+++|+||+|++.......
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~-------------v~f~~L~llVIDEahrfgv~~~~~- 592 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD-------------VKFKDLGLLIIDEEQRFGVKQKEK- 592 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC-------------CCcccCCEEEeecccccchhHHHH-
Confidence 456677777653211 1 34689999999765321 112567899999999986655443
Q ss_pred Hhhc-ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHH
Q 010184 166 ISLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (516)
Q Consensus 166 l~~~-~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 244 (516)
+..+ ...++|+|||||....-.. .+.....+....... .+ -.++. ....+....
T Consensus 593 L~~~~~~~~vL~~SATpiprtl~~-~l~g~~d~s~I~~~p-----~~-R~~V~--t~v~~~~~~---------------- 647 (926)
T TIGR00580 593 LKELRTSVDVLTLSATPIPRTLHM-SMSGIRDLSIIATPP-----ED-RLPVR--TFVMEYDPE---------------- 647 (926)
T ss_pred HHhcCCCCCEEEEecCCCHHHHHH-HHhcCCCcEEEecCC-----CC-ccceE--EEEEecCHH----------------
Confidence 4434 3567999999996432110 111111111111000 00 00111 111111110
Q ss_pred HhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------CceEecCCCHHHHHHHHHHHhcCCCccE
Q 010184 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNT 317 (516)
Q Consensus 245 l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~~l~~F~~~~~~~v 317 (516)
.+...+.... .++.+++|||++++.++.+++.|. +..+||+|++.+|.+++++|+++ +++|
T Consensus 648 ---------~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~I 715 (926)
T TIGR00580 648 ---------LVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQV 715 (926)
T ss_pred ---------HHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCE
Confidence 0111122222 357899999999999999888873 44699999999999999999998 9999
Q ss_pred EEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 318 Lv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
||||+++++|+|+|++++||+++.+.-+..++.|+.||+||.|. .++.|.++..+..-..-+.+|-+
T Consensus 716 LVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~-------------~g~aill~~~~~~l~~~~~~RL~ 782 (926)
T TIGR00580 716 LVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK-------------KAYAYLLYPHQKALTEDAQKRLE 782 (926)
T ss_pred EEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC-------------CeEEEEEECCcccCCHHHHHHHH
Confidence 99999999999999999999886644477789999999999873 45566666544322234555655
Q ss_pred HHHH
Q 010184 398 FLID 401 (516)
Q Consensus 398 ~l~~ 401 (516)
.+.+
T Consensus 783 ~~~~ 786 (926)
T TIGR00580 783 AIQE 786 (926)
T ss_pred HHHH
Confidence 5543
No 37
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.9e-33 Score=295.29 Aligned_cols=293 Identities=20% Similarity=0.206 Sum_probs=216.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-cC------CC-EEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK------KS-CLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~------~~-~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..+.|.|..+++.++.+. +.+..++||+|||++++.++.. +. .. +||++||++|+.|..+++..+....
T Consensus 50 ~~pt~IQ~~~IP~~l~g~---Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 50 EEPTPIQLAAIPLILAGR---DVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 479999999999988874 9999999999999998876632 22 12 9999999999999999999987655
Q ss_pred -CCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----H
Q 010184 96 -DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----V 165 (516)
Q Consensus 96 -~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~ 165 (516)
...+..+.|+... .+....+|+|+||..+.....+. .+......++|+|||+++.+..|.. +
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I 198 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--------KLDLSGVETLVLDEADRMLDMGFIDDIEKI 198 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--------CcchhhcCEEEeccHhhhhcCCCHHHHHHH
Confidence 5667777776432 23345999999999886543321 2333667899999999999875544 5
Q ss_pred Hhhccc-ceEEEEeccCCCCccchhhhH-hh-hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHH
Q 010184 166 ISLTKS-HCKLGLTATLVREDERITDLN-FL-IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (516)
Q Consensus 166 l~~~~~-~~~l~LTATp~~~~~~~~~l~-~~-~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 242 (516)
+..++. ++.+++|||... . +..+. .+ -.|........... .....+...
T Consensus 199 ~~~~p~~~qtllfSAT~~~-~--i~~l~~~~l~~p~~i~v~~~~~~--~~~~~i~q~----------------------- 250 (513)
T COG0513 199 LKALPPDRQTLLFSATMPD-D--IRELARRYLNDPVEIEVSVEKLE--RTLKKIKQF----------------------- 250 (513)
T ss_pred HHhCCcccEEEEEecCCCH-H--HHHHHHHHccCCcEEEEcccccc--ccccCceEE-----------------------
Confidence 555543 678999999975 2 22221 11 12222111100000 000111111
Q ss_pred HHHhhhCc-chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCcc
Q 010184 243 QALYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (516)
Q Consensus 243 ~~l~~~~~-~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~ 316 (516)
.+.+... .|+..+..+++... ..++||||++...++.++..|. +..+||++++++|.++++.|+++ .++
T Consensus 251 -~~~v~~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~ 325 (513)
T COG0513 251 -YLEVESEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELR 325 (513)
T ss_pred -EEEeCCHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCC
Confidence 1111111 36678888887654 4479999999999999999883 66899999999999999999997 999
Q ss_pred EEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 317 vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|||||+++++|||+|.+++||+|+.+. ++..|+||+||++|+|.
T Consensus 326 vLVaTDvaaRGiDi~~v~~VinyD~p~-~~e~yvHRiGRTgRaG~ 369 (513)
T COG0513 326 VLVATDVAARGLDIPDVSHVINYDLPL-DPEDYVHRIGRTGRAGR 369 (513)
T ss_pred EEEEechhhccCCccccceeEEccCCC-CHHHheeccCccccCCC
Confidence 999999999999999999999998875 99999999999999994
No 38
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2e-32 Score=296.96 Aligned_cols=281 Identities=19% Similarity=0.226 Sum_probs=207.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~ 104 (516)
++||+|.++++.++.+. ++++++|||+|||+++..++....+.++||+|+.+|+.|+.+.+... ++ .+..+++
T Consensus 13 ~fr~~Q~~~i~~il~g~---dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~-gi---~~~~~~s 85 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGR---DVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAA-GV---AAAYLNS 85 (591)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 69999999999998765 89999999999999999888777889999999999999999999875 33 4556665
Q ss_pred Ccccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc------hhHHH---HH
Q 010184 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFRK---VI 166 (516)
Q Consensus 105 ~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~~~---~l 166 (516)
+.... ..+..+|+++||+.+.. ......+....+++||+||||++.. +.+.+ +.
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~--------~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQ--------DYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcC--------hHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 53211 23568899999999865 2334555567899999999999874 22333 23
Q ss_pred hhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCcc-cceeEEEeccCCHHHHHHHHHhhhhHHH
Q 010184 167 SLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIA-NVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (516)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l~-~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 242 (516)
..++...+++||||+...... ++...++ +..+.. ++-. +..+ .+.
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~--~i~~~l~~~~~~~~~~--------~~~r~nl~~-~v~-------------------- 206 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQ--DIRELLRLADANEFIT--------SFDRPNLRF-SVV-------------------- 206 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHH--HHHHHcCCCCCCeEec--------CCCCCCcEE-EEE--------------------
Confidence 344455689999999754321 2222222 111110 0000 1111 000
Q ss_pred HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccE
Q 010184 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (516)
Q Consensus 243 ~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~v 317 (516)
....+...+..++.. ..+.++||||+++..++.+++.|. +..+||+++.++|..+++.|..+ .++|
T Consensus 207 -----~~~~~~~~l~~~l~~---~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~v 277 (591)
T TIGR01389 207 -----KKNNKQKFLLDYLKK---HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKV 277 (591)
T ss_pred -----eCCCHHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcE
Confidence 011122233333433 337899999999999999999983 45799999999999999999998 8999
Q ss_pred EEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 318 Lv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
||+|+++++|||+|+++.||+++.+ .|...|.|++||+||.|.
T Consensus 278 lVaT~a~~~GID~p~v~~VI~~~~p-~s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 278 MVATNAFGMGIDKPNVRFVIHYDMP-GNLESYYQEAGRAGRDGL 320 (591)
T ss_pred EEEechhhccCcCCCCCEEEEcCCC-CCHHHHhhhhccccCCCC
Confidence 9999999999999999999999776 499999999999999884
No 39
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.1e-32 Score=299.38 Aligned_cols=291 Identities=18% Similarity=0.189 Sum_probs=202.2
Q ss_pred CCCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..++|+++|.+|++.+... +.+.+.++.+|||+|||++++.++.. .+.+++|++||++|+.|+.+.|++++...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3568999999999998765 22347899999999999999877633 35689999999999999999999987655
Q ss_pred CCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHH
Q 010184 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (516)
Q Consensus 96 ~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (516)
+..+..++|+.... ..+..+|+|+|+..+... +.-.+.++||+||+|++.......+.
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-------------v~~~~l~lvVIDE~Hrfg~~qr~~l~ 404 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-------------VEFHNLGLVIIDEQHRFGVEQRLALR 404 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-------------chhcccceEEEechhhhhHHHHHHHH
Confidence 56788999886521 135699999999877431 11256799999999998766555544
Q ss_pred hhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHh
Q 010184 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (516)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~ 246 (516)
..-...+.|+|||||....-. + ...|...... ...+ ..+ +..+...++..
T Consensus 405 ~~~~~~~iL~~SATp~prtl~---~-~~~g~~~~s~-i~~~-p~~---r~~i~~~~~~~--------------------- 454 (681)
T PRK10917 405 EKGENPHVLVMTATPIPRTLA---M-TAYGDLDVSV-IDEL-PPG---RKPITTVVIPD--------------------- 454 (681)
T ss_pred hcCCCCCEEEEeCCCCHHHHH---H-HHcCCCceEE-EecC-CCC---CCCcEEEEeCc---------------------
Confidence 433356789999999642211 1 1112110000 0000 000 00011111110
Q ss_pred hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHH--------HHHHHHHHh-------CCceEecCCCHHHHHHHHHHHhc
Q 010184 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL-------RKPMIYGATSHVERTKILQAFKC 311 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~--------~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~ 311 (516)
..+..++..+.... ..+++++|||+.++ .++.+++.| ++..+||++++.+|.+++++|++
T Consensus 455 ---~~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 455 ---SRRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred ---ccHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 00111223333322 46889999998643 233334433 36679999999999999999999
Q ss_pred CCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 312 ~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+ +++|||||+++++|+|+|++++||+++.+.-+..++.|+.||+||.|.
T Consensus 530 g-~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 530 G-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred C-CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 8 999999999999999999999999987764467889999999999873
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=1.8e-32 Score=303.84 Aligned_cols=300 Identities=17% Similarity=0.219 Sum_probs=204.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
.+|+|+|.+++...+..+ +++++++|||+|||+++..++.+ .++++|||+|+++|+.|+.++|.++... +..+.
T Consensus 22 ~~l~p~Q~~ai~~~~~~g--~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~-g~~v~ 98 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDG--KNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL-GVRVG 98 (737)
T ss_pred CcCCHHHHHHHHHHHhCC--CcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC-CCEEE
Confidence 479999999999855554 49999999999999999876543 3678999999999999999999987433 45788
Q ss_pred EEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhc----c
Q 010184 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----K 170 (516)
Q Consensus 101 ~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~----~ 170 (516)
.++|+.... ..+..+|+|+||+.+....++. ..++ .+++++|+||+|.+.+. .+..++..+ .
T Consensus 99 ~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~------~~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 99 ISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG------APWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEeCCcCccccccCCCCEEEECHHHHHHHHhcC------hhhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 888875432 2245799999999886543221 1222 56799999999999764 333333333 3
Q ss_pred cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEE-EeccCCHHHHHHHHHhhhhHHHHHHhhhC
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE-VWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~-v~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 249 (516)
..++++||||+.+.+ ++..+++...+...+. |+.... +...-... +. . ..+ ....
T Consensus 171 ~~qii~lSATl~n~~----~la~wl~~~~~~~~~r---------pv~l~~~v~~~~~~~----~~-~---~~~---~~~~ 226 (737)
T PRK02362 171 DLQVVALSATIGNAD----ELADWLDAELVDSEWR---------PIDLREGVFYGGAIH----FD-D---SQR---EVEV 226 (737)
T ss_pred CCcEEEEcccCCCHH----HHHHHhCCCcccCCCC---------CCCCeeeEecCCeec----cc-c---ccc---cCCC
Confidence 457899999997533 2344444333221111 111100 00000000 00 0 000 0011
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----------------------------------------
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------------------- 288 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----------------------------------------- 288 (516)
+.+...+..+++.+ ..+.++||||+++..++.++..|
T Consensus 227 ~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 227 PSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 12222333333333 35779999999999877766544
Q ss_pred CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ecC----CCCCHHHHHHHhhcccccC
Q 010184 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISS----HAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 289 ~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~~----~~~s~~~~~Qr~GR~~R~g 360 (516)
++.++||++++.+|..+++.|+++ .++|||||+++++|+|+|..++||. +++ .+.+..+|.||+||+||.|
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g 383 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPG 383 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCC
Confidence 345789999999999999999998 9999999999999999999999886 431 1238899999999999999
Q ss_pred C
Q 010184 361 G 361 (516)
Q Consensus 361 ~ 361 (516)
.
T Consensus 384 ~ 384 (737)
T PRK02362 384 L 384 (737)
T ss_pred C
Confidence 4
No 41
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=2e-32 Score=297.61 Aligned_cols=290 Identities=17% Similarity=0.181 Sum_probs=202.2
Q ss_pred CCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
.++|+++|.+|++.++.. ..+.+.++.+|||+|||++++.++.. .+.+++|++||++|+.|+.+.|.+++...+
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~g 312 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPLG 312 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhcccC
Confidence 468999999999998765 22336799999999999998876533 357899999999999999999999876556
Q ss_pred CcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh
Q 010184 97 DQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (516)
..+..++|+.... ..+..+|+|+|+..+... +.-.+.++||+||+|++.......+..
T Consensus 313 i~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-------------~~~~~l~lvVIDEaH~fg~~qr~~l~~ 379 (630)
T TIGR00643 313 IEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-------------VEFKRLALVIIDEQHRFGVEQRKKLRE 379 (630)
T ss_pred cEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-------------ccccccceEEEechhhccHHHHHHHHH
Confidence 6788888875421 135689999999877431 112568999999999988766555555
Q ss_pred hcc---cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHH
Q 010184 168 LTK---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (516)
Q Consensus 168 ~~~---~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 244 (516)
... ..+.|+|||||...... + ...|..- ....+....+ .......+....
T Consensus 380 ~~~~~~~~~~l~~SATp~prtl~---l-~~~~~l~--~~~i~~~p~~---r~~i~~~~~~~~------------------ 432 (630)
T TIGR00643 380 KGQGGFTPHVLVMSATPIPRTLA---L-TVYGDLD--TSIIDELPPG---RKPITTVLIKHD------------------ 432 (630)
T ss_pred hcccCCCCCEEEEeCCCCcHHHH---H-HhcCCcc--eeeeccCCCC---CCceEEEEeCcc------------------
Confidence 443 56789999999753211 0 1111100 0000000000 001111111100
Q ss_pred HhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccH--------HHHHHHHHHh-------CCceEecCCCHHHHHHHHHHH
Q 010184 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL--------FALTEYAMKL-------RKPMIYGATSHVERTKILQAF 309 (516)
Q Consensus 245 l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~--------~~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F 309 (516)
.+..++..+.+.. ..+.+++|||+.+ ..++.+++.| ++..+||++++.+|.+++++|
T Consensus 433 ------~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F 504 (630)
T TIGR00643 433 ------EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEF 504 (630)
T ss_pred ------hHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHH
Confidence 0111222333222 3578999999875 3344444444 356899999999999999999
Q ss_pred hcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 310 ~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++ +.++||||+++++|+|+|++++||+++.+.-+..++.|+.||+||.|.
T Consensus 505 ~~g-~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 505 REG-EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred HcC-CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC
Confidence 998 999999999999999999999999987764478899999999999883
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.2e-31 Score=300.27 Aligned_cols=304 Identities=17% Similarity=0.232 Sum_probs=200.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c-----------CCCEEEEEeChhhHHHHHHHHH--
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFK-- 89 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----------~~~~Lvl~P~~~L~~Qw~~e~~-- 89 (516)
..|+|+|.+|++.++.+. ++++++|||+|||++++.++.. + +..+|||+|+++|+.|+.+.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~g~---nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGK---NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 369999999999987654 9999999999999998876532 1 1259999999999999987554
Q ss_pred -----Hhh-----CCCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccC
Q 010184 90 -----LWS-----TIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (516)
Q Consensus 90 -----~~~-----~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (516)
.+. ..+...+.+.+|+.... +...++|+||||+++...... ......+ ...++||+||+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~----~~~~~~l--~~l~~VVIDE~ 181 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS----PKFREKL--RTVKWVIVDEI 181 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC----hhHHHHH--hcCCEEEEech
Confidence 232 22355678888875422 234689999999998655432 1222334 56789999999
Q ss_pred ccCCchh--------HHHHHhhc-ccceEEEEeccCCCCccchhhhHhhhCCcccc--ccHHHHHhCCCcccceeEEEec
Q 010184 155 HVVPAHM--------FRKVISLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYE--ANWLDLVKGGFIANVQCAEVWC 223 (516)
Q Consensus 155 H~~~~~~--------~~~~l~~~-~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~--~~~~~l~~~g~l~~~~~~~v~~ 223 (516)
|.+.+.. ..++.... ...++++||||+...+. +..+++..... .....++...+..+... .+.+
T Consensus 182 H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~----va~~L~~~~~~~~~r~~~iv~~~~~k~~~i-~v~~ 256 (876)
T PRK13767 182 HSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEE----VAKFLVGYEDDGEPRDCEIVDARFVKPFDI-KVIS 256 (876)
T ss_pred hhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHH----HHHHhcCccccCCCCceEEEccCCCccceE-EEec
Confidence 9998542 22233333 24578999999864222 22222211100 00000111111111111 1112
Q ss_pred cCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----------Cce
Q 010184 224 PMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------KPM 292 (516)
Q Consensus 224 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----------~~~ 292 (516)
+... .... ..... .......+..++ ..+.++||||+++..++.++..|. +.+
T Consensus 257 p~~~-l~~~---~~~~~--------~~~l~~~L~~~i-----~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~ 319 (876)
T PRK13767 257 PVDD-LIHT---PAEEI--------SEALYETLHELI-----KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGA 319 (876)
T ss_pred cCcc-cccc---ccchh--------HHHHHHHHHHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceee
Confidence 2110 0000 00000 000112222222 346789999999999999888762 556
Q ss_pred EecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 293 i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
+||++++++|..+++.|+++ .+++||||+++++|||+|++++||++++|. |...|+||+||+||.+
T Consensus 320 hHg~ls~~~R~~ve~~fk~G-~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~-sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 320 HHSSLSREVRLEVEEKLKRG-ELKVVVSSTSLELGIDIGYIDLVVLLGSPK-SVSRLLQRIGRAGHRL 385 (876)
T ss_pred eeCCCCHHHHHHHHHHHHcC-CCeEEEECChHHhcCCCCCCcEEEEeCCCC-CHHHHHHhcccCCCCC
Confidence 99999999999999999998 999999999999999999999999998774 9999999999999875
No 43
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.4e-32 Score=286.59 Aligned_cols=370 Identities=19% Similarity=0.278 Sum_probs=266.2
Q ss_pred CCCCCHHHHHHHHHHHhC----------CCCcccEEEecCCCcHHHHHHHHHHhc------C-CCEEEEEeChhhHHHHH
Q 010184 23 HAQPRPYQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI------K-KSCLCLATNAVSVDQWA 85 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~i~~~------~-~~~Lvl~P~~~L~~Qw~ 85 (516)
...|.|||..+++.|+.. ..+-.|||+..||+|||++.++++.+. + +++|||||..+ +.+|.
T Consensus 666 v~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt-~~NW~ 744 (1567)
T KOG1015|consen 666 VIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNT-ALNWM 744 (1567)
T ss_pred HhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHH-HHHHH
Confidence 367999999999988632 234578999999999999999887543 2 68999999997 77899
Q ss_pred HHHHHhhCC-CC-CcEEEEeCCc-c---------ccccCCCcEEEEchhhhhccCCCC-----hhHHHHHHHHccCCccE
Q 010184 86 FQFKLWSTI-QD-DQICRFTSDS-K---------ERFRGNAGVVVTTYNMVAFGGKRS-----EESEKIIEEIRNREWGL 148 (516)
Q Consensus 86 ~e~~~~~~~-~~-~~v~~~~~~~-~---------~~~~~~~~IvV~T~~~l~~~~~r~-----~~~~~~~~~l~~~~~~~ 148 (516)
.+|.+|..- .. ..+.++.-+. + ..|....+|.|.-|+|++...... .....++..+...-+++
T Consensus 745 ~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~ 824 (1567)
T KOG1015|consen 745 NEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDF 824 (1567)
T ss_pred HHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCe
Confidence 999999642 11 2333333221 1 113455689999999998763211 12344555666677899
Q ss_pred EEEccCccCCch--hHHHHHhhcccceEEEEeccCCCCccchh-hhHhhhCCcc--------------------------
Q 010184 149 LLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL-------------------------- 199 (516)
Q Consensus 149 vIlDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~-------------------------- 199 (516)
||+||+|.++|. ...+.+..+...++|.|||||.+++-..- -+..++.|.+
T Consensus 825 vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI~nGq~~dST~~ 904 (1567)
T KOG1015|consen 825 VVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPIQNGQCADSTMV 904 (1567)
T ss_pred EEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCccccCccCCCcHH
Confidence 999999999986 66778888899999999999998654321 1111111111
Q ss_pred ------------ccccHHHHHh-------CCCcccceeEEEeccCCHH---HHHHHHHh------hhhH---HHHHH---
Q 010184 200 ------------YEANWLDLVK-------GGFIANVQCAEVWCPMTKE---FFSEYLKK------ENSK---KKQAL--- 245 (516)
Q Consensus 200 ------------~~~~~~~l~~-------~g~l~~~~~~~v~~~~~~~---~~~~~l~~------~~~~---~~~~l--- 245 (516)
|+.- ...++ ..+|+|...+.+.+.+++- .|..|+.- .... ....+
T Consensus 905 DVr~Mk~RsHILye~L-kgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~~g~~arlf~d 983 (1567)
T KOG1015|consen 905 DVRVMKKRSHILYEML-KGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGGRGAGARLFQD 983 (1567)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccccccchhhhHHHH
Confidence 1100 00000 1466677777777777764 35555520 0000 00000
Q ss_pred --------------------------------------------------------------------------------
Q 010184 246 -------------------------------------------------------------------------------- 245 (516)
Q Consensus 246 -------------------------------------------------------------------------------- 245 (516)
T Consensus 984 fqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~~~~~g~~ev~ 1063 (1567)
T KOG1015|consen 984 FQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSGSGSDGDVEVI 1063 (1567)
T ss_pred HHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccccccCCchhhh
Confidence
Q ss_pred ---------------------------------------------------------hhhCcchHHHHHHHHHHHhhcCC
Q 010184 246 ---------------------------------------------------------YVMNPNKFRACEFLIRFHEQQRG 268 (516)
Q Consensus 246 ---------------------------------------------------------~~~~~~k~~~~~~ll~~~~~~~~ 268 (516)
....++|+-++..||...+ .-|
T Consensus 1064 k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLleIL~mce-eIG 1142 (1567)
T KOG1015|consen 1064 KVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLEILRMCE-EIG 1142 (1567)
T ss_pred hhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHHHHHHHH-Hhc
Confidence 0113466777888887777 789
Q ss_pred CeEEEEeccHHHHHHHHHHhC---------------------------CceEecCCCHHHHHHHHHHHhcCCCcc---EE
Q 010184 269 DKIIVFADNLFALTEYAMKLR---------------------------KPMIYGATSHVERTKILQAFKCSRDLN---TI 318 (516)
Q Consensus 269 ~k~iVF~~~~~~~~~l~~~L~---------------------------~~~i~g~~~~~eR~~~l~~F~~~~~~~---vL 318 (516)
+|+|||+++...++.|..+|. ...|+|.+...+|.+..++|++..+.+ +|
T Consensus 1143 DKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNdp~NlRaRl~L 1222 (1567)
T KOG1015|consen 1143 DKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFL 1222 (1567)
T ss_pred ceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcCcccceeEEEE
Confidence 999999999999999999881 235899999999999999999975555 68
Q ss_pred EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHH
Q 010184 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (516)
Q Consensus 319 v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~ 398 (516)
|+|++|+.|||+-+||-||+++..| ||.-..|.+=|+.|.| |.+.+|+|+|+..+|+|+.++.+.
T Consensus 1223 ISTRAGsLGiNLvAANRVIIfDasW-NPSyDtQSIFRvyRfG-----------QtKPvyiYRfiAqGTmEeKIYkRQ--- 1287 (1567)
T KOG1015|consen 1223 ISTRAGSLGINLVAANRVIIFDASW-NPSYDTQSIFRVYRFG-----------QTKPVYIYRFIAQGTMEEKIYKRQ--- 1287 (1567)
T ss_pred EeeccCccccceeecceEEEEeccc-CCccchHHHHHHHhhc-----------CcCceeehhhhhcccHHHHHHHHH---
Confidence 8999999999999999888887777 9999999999999999 899999999999999999877654
Q ss_pred HHHcCCceEEEe
Q 010184 399 LIDQGYSFKVIT 410 (516)
Q Consensus 399 l~~~g~~~~vi~ 410 (516)
...|+.+++|+.
T Consensus 1288 VTKqsls~RVVD 1299 (1567)
T KOG1015|consen 1288 VTKQSLSFRVVD 1299 (1567)
T ss_pred HhHhhhhhhhhh
Confidence 345666676663
No 44
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-32 Score=269.81 Aligned_cols=293 Identities=20% Similarity=0.246 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---------CC--CEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KK--SCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------~~--~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
...|.|..++..++.+. +.++-++||||||++++.++..+ ++ -.|||+||++|+.|+..-...|..
T Consensus 28 ~mTpVQa~tIPlll~~K---DVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~ 104 (567)
T KOG0345|consen 28 KMTPVQAATIPLLLKNK---DVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLE 104 (567)
T ss_pred ccCHHHHhhhHHHhcCC---ceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHH
Confidence 68999999999888776 89999999999999999877432 12 489999999999999987776643
Q ss_pred -CCCCcEEEEeCCcccc-----c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH---
Q 010184 94 -IQDDQICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR--- 163 (516)
Q Consensus 94 -~~~~~v~~~~~~~~~~-----~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~--- 163 (516)
++......+.|+..-. + ...++|+|+||+.|.....|. ...+..+...++|+|||+++....|.
T Consensus 105 ~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~------~~~l~~rsLe~LVLDEADrLldmgFe~~~ 178 (567)
T KOG0345|consen 105 HLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQRE------AEKLSFRSLEILVLDEADRLLDMGFEASV 178 (567)
T ss_pred hhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhch------hhhccccccceEEecchHhHhcccHHHHH
Confidence 3555667777774311 1 356789999999886654332 23343467789999999999987665
Q ss_pred -HHHhhcccceEEE-EeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccC--CH-HHHHHHHHhhh
Q 010184 164 -KVISLTKSHCKLG-LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TK-EFFSEYLKKEN 238 (516)
Q Consensus 164 -~~l~~~~~~~~l~-LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~--~~-~~~~~~l~~~~ 238 (516)
.++..++..++-| +|||-..+.+. |...|.-.++++..-...+ ++ ....+|+
T Consensus 179 n~ILs~LPKQRRTGLFSATq~~~v~d-------------------L~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~---- 235 (567)
T KOG0345|consen 179 NTILSFLPKQRRTGLFSATQTQEVED-------------------LARAGLRNPVRVSVKEKSKSATPSSLALEYL---- 235 (567)
T ss_pred HHHHHhcccccccccccchhhHHHHH-------------------HHHhhccCceeeeecccccccCchhhcceee----
Confidence 4566666666655 49998644332 3333333333322221111 11 1222222
Q ss_pred hHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-------CCceEecCCCHHHHHHHHHHHhc
Q 010184 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKC 311 (516)
Q Consensus 239 ~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~ 311 (516)
.+....|+..+..++... ...|+|||..+...++.....+ .+..+||.+++..|..+++.|.+
T Consensus 236 -------v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~ 305 (567)
T KOG0345|consen 236 -------VCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK 305 (567)
T ss_pred -------EecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh
Confidence 222234555666666543 3789999999988888887776 24469999999999999999999
Q ss_pred CCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 312 ~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
. .-.+|+||+++++|||+|++|.||++++|. ++..++||.||++|.|.
T Consensus 306 ~-~~~vl~~TDVaARGlDip~iD~VvQ~DpP~-~~~~FvHR~GRTaR~gr 353 (567)
T KOG0345|consen 306 L-SNGVLFCTDVAARGLDIPGIDLVVQFDPPK-DPSSFVHRCGRTARAGR 353 (567)
T ss_pred c-cCceEEeehhhhccCCCCCceEEEecCCCC-ChhHHHhhcchhhhccC
Confidence 6 889999999999999999999999998875 99999999999999994
No 45
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=5.4e-32 Score=296.30 Aligned_cols=289 Identities=17% Similarity=0.165 Sum_probs=201.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
..+||+|.++|+.++.+. ++++.+|||+|||+++..++....+.+|||+|+++|+.++...+... ++ ....+.
T Consensus 459 ~sFRp~Q~eaI~aiL~Gr---DVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~-GI---~Aa~L~ 531 (1195)
T PLN03137 459 HSFRPNQREIINATMSGY---DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQA-NI---PAASLS 531 (1195)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhC-CC---eEEEEE
Confidence 479999999999988764 99999999999999999988888889999999999998666666553 33 344455
Q ss_pred CCccc-----cc------cCCCcEEEEchhhhhccCCCChhHHHHHHHHc-cCCccEEEEccCccCCch------hHHH-
Q 010184 104 SDSKE-----RF------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR-NREWGLLLMDEVHVVPAH------MFRK- 164 (516)
Q Consensus 104 ~~~~~-----~~------~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~-~~~~~~vIlDEaH~~~~~------~~~~- 164 (516)
++... .+ .+..+|+++||+.+.... .....+..+. ...+.+|||||||++..- .|+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d----~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSD----SLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcch----HHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH
Confidence 54221 01 156899999999986421 0111222222 234789999999998742 2332
Q ss_pred --HHhhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 165 --VISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 165 --~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
+...++...+++||||....... ++...++ +..+.. ++-.+.....+. +...
T Consensus 608 ~~Lr~~fp~vPilALTATAT~~V~e--DI~~~L~l~~~~vfr~--------Sf~RpNL~y~Vv-~k~k------------ 664 (1195)
T PLN03137 608 GILKQKFPNIPVLALTATATASVKE--DVVQALGLVNCVVFRQ--------SFNRPNLWYSVV-PKTK------------ 664 (1195)
T ss_pred HHHHHhCCCCCeEEEEecCCHHHHH--HHHHHcCCCCcEEeec--------ccCccceEEEEe-ccch------------
Confidence 23344556789999998653322 2222222 222211 111111111111 0000
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCC
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
.....+..++... ..+...||||.++..++.++..|. +..+||++++++|..++++|..+ +
T Consensus 665 -----------k~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-e 730 (1195)
T PLN03137 665 -----------KCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-E 730 (1195)
T ss_pred -----------hHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-C
Confidence 0011222223211 235678999999999999999983 66899999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|||||.++++|||+|++++||+++.| .|...|.|++||+||.|.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlP-kSiEsYyQriGRAGRDG~ 776 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLP-KSIEGYHQECGRAGRDGQ 776 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCC-CCHHHHHhhhcccCCCCC
Confidence 9999999999999999999999999776 499999999999999995
No 46
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.6e-31 Score=302.41 Aligned_cols=319 Identities=18% Similarity=0.188 Sum_probs=214.4
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 18 MELKPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 18 ~~l~~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+.-...++++|.|.+|++.++.. ..+.+.++++|||+|||.+++.++. ..+++++|||||++|+.|+.+.|.++
T Consensus 593 ~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~ 672 (1147)
T PRK10689 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDR 672 (1147)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 33455678999999999988764 3346889999999999998875542 23678999999999999999999987
Q ss_pred hCCCCCcEEEEeCCcccc-----c----cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH
Q 010184 92 STIQDDQICRFTSDSKER-----F----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162 (516)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~ 162 (516)
+...+..+..+++..... + .+..+|+|+|++.+... +.-.+++++|+||+|++.....
T Consensus 673 ~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~-------------v~~~~L~lLVIDEahrfG~~~~ 739 (1147)
T PRK10689 673 FANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSD-------------VKWKDLGLLIVDEEHRFGVRHK 739 (1147)
T ss_pred hccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCC-------------CCHhhCCEEEEechhhcchhHH
Confidence 654455676676643211 1 25689999999866421 1115679999999999965443
Q ss_pred HHHHhhc-ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 163 RKVISLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 163 ~~~l~~~-~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
..+..+ ...++|+|||||....... .+..+..+.....+.. +.+ ++. ........
T Consensus 740 -e~lk~l~~~~qvLl~SATpiprtl~l-~~~gl~d~~~I~~~p~-----~r~-~v~--~~~~~~~~-------------- 795 (1147)
T PRK10689 740 -ERIKAMRADVDILTLTATPIPRTLNM-AMSGMRDLSIIATPPA-----RRL-AVK--TFVREYDS-------------- 795 (1147)
T ss_pred -HHHHhcCCCCcEEEEcCCCCHHHHHH-HHhhCCCcEEEecCCC-----CCC-Cce--EEEEecCc--------------
Confidence 344444 3457899999997532211 1111111211111000 000 010 01110000
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-------CCceEecCCCHHHHHHHHHHHhcCCC
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
......++... .++.+++|||+++..++.+++.| ++..+||+|++.+|.+++.+|+++ +
T Consensus 796 -----------~~~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k 861 (1147)
T PRK10689 796 -----------LVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-R 861 (1147)
T ss_pred -----------HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-C
Confidence 00111222222 24678999999999988888877 345789999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHH
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (516)
++|||||+++++|||+|++++||+..+..-+..+|.|+.||+||.|. .++.|.+...+..-...+.+
T Consensus 862 ~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~-------------~g~a~ll~~~~~~~~~~~~~ 928 (1147)
T PRK10689 862 FNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQK 928 (1147)
T ss_pred CCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCC-------------ceEEEEEeCCCcccCHHHHH
Confidence 99999999999999999999999764432267889999999999874 35566555444333344555
Q ss_pred HHHHHH
Q 010184 395 RQQFLI 400 (516)
Q Consensus 395 r~~~l~ 400 (516)
|-..+.
T Consensus 929 rl~~~~ 934 (1147)
T PRK10689 929 RLEAIA 934 (1147)
T ss_pred HHHHHH
Confidence 655554
No 47
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.98 E-value=1.8e-31 Score=262.63 Aligned_cols=358 Identities=18% Similarity=0.242 Sum_probs=243.9
Q ss_pred CCCCHHHHHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh--cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 24 AQPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~--~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
+.|-|||.+++.|+.... --.+|||+++||.|||+++++++.. -+.|+||+||+.+ +.||.+|+.++++ ....+
T Consensus 183 i~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VA-lmQW~nEI~~~T~-gslkv 260 (791)
T KOG1002|consen 183 IPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVA-LMQWKNEIERHTS-GSLKV 260 (791)
T ss_pred ecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHH-HHHHHHHHHHhcc-CceEE
Confidence 679999999999875431 2347899999999999999987643 3579999999987 8899999999976 55688
Q ss_pred EEEeCCccccc---cCCCcEEEEchhhhhccCCC-------ChhHHHHHHHHccCCccEEEEccCccCCchh--HHHHHh
Q 010184 100 CRFTSDSKERF---RGNAGVVVTTYNMVAFGGKR-------SEESEKIIEEIRNREWGLLLMDEVHVVPAHM--FRKVIS 167 (516)
Q Consensus 100 ~~~~~~~~~~~---~~~~~IvV~T~~~l~~~~~r-------~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~--~~~~l~ 167 (516)
.+|+|..+.+- -...++|+|||..+-+..++ .+...+-...|...+|--||+||||.+++.. -.+.+.
T Consensus 261 ~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV~ 340 (791)
T KOG1002|consen 261 YIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAVF 340 (791)
T ss_pred EEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHHH
Confidence 89999876531 13589999999888554222 1112333445556788899999999999762 333455
Q ss_pred hcccceEEEEeccCCCCc-cchhhhHh-----------------------------------------------------
Q 010184 168 LTKSHCKLGLTATLVRED-ERITDLNF----------------------------------------------------- 193 (516)
Q Consensus 168 ~~~~~~~l~LTATp~~~~-~~~~~l~~----------------------------------------------------- 193 (516)
.+.+.++++|||||.++. +..-.|..
T Consensus 341 ~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~Iq 420 (791)
T KOG1002|consen 341 ALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPIQ 420 (791)
T ss_pred hhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccch
Confidence 567889999999998621 00000000
Q ss_pred ---hhCC--------------------------------cc---------------ccc---------------------
Q 010184 194 ---LIGP--------------------------------KL---------------YEA--------------------- 202 (516)
Q Consensus 194 ---~~gp--------------------------------~~---------------~~~--------------------- 202 (516)
..|| .+ |+.
T Consensus 421 kfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNN 500 (791)
T KOG1002|consen 421 KFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNN 500 (791)
T ss_pred hhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhh
Confidence 0000 00 000
Q ss_pred ---------cHHHHHhCCCcc--------------cceeEEEeccCCHH----------H----HHHHHHhh--------
Q 010184 203 ---------NWLDLVKGGFIA--------------NVQCAEVWCPMTKE----------F----FSEYLKKE-------- 237 (516)
Q Consensus 203 ---------~~~~l~~~g~l~--------------~~~~~~v~~~~~~~----------~----~~~~l~~~-------- 237 (516)
...+++...+++ .+.| -.|.-..+ | ..+|....
T Consensus 501 YAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C--~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtC 578 (791)
T KOG1002|consen 501 YANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVEC--GLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTC 578 (791)
T ss_pred HHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceee--cccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCC
Confidence 000000000000 0111 11111110 1 11222100
Q ss_pred ----------------------hhHHHHHH------hhhCcchHHHHHHHHHHH-hhcCCCeEEEEeccHHHHHHHHHHh
Q 010184 238 ----------------------NSKKKQAL------YVMNPNKFRACEFLIRFH-EQQRGDKIIVFADNLFALTEYAMKL 288 (516)
Q Consensus 238 ----------------------~~~~~~~l------~~~~~~k~~~~~~ll~~~-~~~~~~k~iVF~~~~~~~~~l~~~L 288 (516)
..+...++ ....+.|.+++..-+.+. +..+.-|.|||+++..+++.+.-.|
T Consensus 579 P~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL 658 (791)
T KOG1002|consen 579 PVCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRL 658 (791)
T ss_pred ccccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHh
Confidence 00111111 123445666665555433 3345568999999999999999999
Q ss_pred C-----CceEecCCCHHHHHHHHHHHhcCCCccEEEE-eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCC
Q 010184 289 R-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362 (516)
Q Consensus 289 ~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~-t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~ 362 (516)
+ +.-+.|+|++..|...++.|++++.++|++. -++||..+|+..|+.|++++||| |+....|+.+|+||+|
T Consensus 659 ~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW-NpaVe~Qa~DRiHRIG-- 735 (791)
T KOG1002|consen 659 GKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW-NPAVEWQAQDRIHRIG-- 735 (791)
T ss_pred hccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc-cHHHHhhhhhhHHhhc--
Confidence 5 3458999999999999999999999998765 59999999999999999999887 9999999999999999
Q ss_pred ccccccCCCCceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 363 LEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 363 ~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
|-+.+.+.+++-.+++|+.+-...++
T Consensus 736 ---------Q~rPvkvvrf~iEnsiE~kIieLQeK 761 (791)
T KOG1002|consen 736 ---------QYRPVKVVRFCIENSIEEKIIELQEK 761 (791)
T ss_pred ---------CccceeEEEeehhccHHHHHHHHHHH
Confidence 88899999999999999977654443
No 48
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.98 E-value=2.5e-32 Score=272.14 Aligned_cols=304 Identities=15% Similarity=0.135 Sum_probs=224.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
..+.+.|..+|...+.+. +.+-++-||+|||++.+.++... +--+|||.||++|+.|..+.+.+...
T Consensus 90 v~~teiQ~~~Ip~aL~G~---DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGH---DVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred ccHHHHHHhhcchhccCc---ccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 467889999999888775 88899999999999998876331 23599999999999999999998776
Q ss_pred CCCCcEEEEeCCccccc----cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh--
Q 010184 94 IQDDQICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS-- 167 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~~----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~-- 167 (516)
......+.+.|+..-++ -....|+||||+.|...... -..+......++|+|||+++....|...+.
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde-------~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDE-------NPNFSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhh-------cCCCCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 66667777777755322 24688999999988553211 112334566799999999999987776554
Q ss_pred --hcc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEec---cCCHHHHHHHHHhhhhHH
Q 010184 168 --LTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC---PMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 168 --~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~---~~~~~~~~~~l~~~~~~~ 241 (516)
.++ .++.|++|||+.+.-.....| .+.++.+..++. .-+|+....+
T Consensus 240 i~~lP~~RQTLLFSATqt~svkdLaRL--------------------sL~dP~~vsvhe~a~~atP~~L~Q~-------- 291 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVKDLARL--------------------SLKDPVYVSVHENAVAATPSNLQQS-------- 291 (758)
T ss_pred HHhCChhheeeeeecccchhHHHHHHh--------------------hcCCCcEEEEeccccccChhhhhhe--------
Confidence 444 457899999997543322111 112222222221 1222222222
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----C--CceEecCCCHHHHHHHHHHHhcCCC
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----R--KPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~--~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
.+.+....|+.++-..|..|. ..|.|||..+...+..++..+ + ...+||.+++..|.++..+|... .
T Consensus 292 --y~~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~-~ 365 (758)
T KOG0343|consen 292 --YVIVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK-R 365 (758)
T ss_pred --EEEEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh-c
Confidence 233444567777777777765 789999999988888877776 2 33589999999999999999997 8
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEc
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~ 383 (516)
..|||||+++++|+|+|.+|+||+++.|- +...|+||+||+.|.+ ...++++|-+-+
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPe-dv~tYIHRvGRtAR~~-----------~~G~sll~L~ps 422 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPE-DVDTYIHRVGRTARYK-----------ERGESLLMLTPS 422 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCch-hHHHHHHHhhhhhccc-----------CCCceEEEEcch
Confidence 89999999999999999999999998885 9999999999999999 555666654433
No 49
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.98 E-value=3.2e-30 Score=270.82 Aligned_cols=323 Identities=23% Similarity=0.336 Sum_probs=208.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 19 ~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.+.....||+||.+-+...+ .. ++|+++|||+|||++|+.++... +.++++++|++-|+.|....|..++
T Consensus 56 ~~p~~~~lR~YQ~eivq~AL-gk---Ntii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~- 130 (746)
T KOG0354|consen 56 IYPTNLELRNYQEELVQPAL-GK---NTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL- 130 (746)
T ss_pred cccCcccccHHHHHHhHHhh-cC---CeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc-
Confidence 35667899999999999988 33 89999999999999999887442 4789999999999999998888874
Q ss_pred CCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-hhHHHHHh
Q 010184 94 IQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVIS 167 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~l~ 167 (516)
.+ ..+....++.... .....+|+|+|++.+.+.++.... +.| ..+.++||||||+... ..|..++.
T Consensus 131 ~~-~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~-----~~l--s~fs~iv~DE~Hra~kn~~Y~~Vmr 202 (746)
T KOG0354|consen 131 IP-YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH-----DEL--SDFSLIVFDECHRTSKNHPYNNIMR 202 (746)
T ss_pred Cc-ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc-----ccc--ceEEEEEEcccccccccccHHHHHH
Confidence 33 3444444442211 224689999999999887664321 112 5688999999999874 35555553
Q ss_pred hc-----ccceEEEEeccCCCCccchh-hhHhhhCCccccc--------cH-----------------------------
Q 010184 168 LT-----KSHCKLGLTATLVREDERIT-DLNFLIGPKLYEA--------NW----------------------------- 204 (516)
Q Consensus 168 ~~-----~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~~~~--------~~----------------------------- 204 (516)
.+ ...++|||||||...-+... .+..++-. .++ +.
T Consensus 203 ~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as--ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~ 280 (746)
T KOG0354|consen 203 EYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS--LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIE 280 (746)
T ss_pred HHHHhhhccccEEEEecCCCccHHHHHHHHHhhhee--cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHH
Confidence 22 34489999999985332221 11111111 000 00
Q ss_pred ---HHHHhCCCccccee----EEEecc-----------------CCHHHHHHH---H---------------H---hhhh
Q 010184 205 ---LDLVKGGFIANVQC----AEVWCP-----------------MTKEFFSEY---L---------------K---KENS 239 (516)
Q Consensus 205 ---~~l~~~g~l~~~~~----~~v~~~-----------------~~~~~~~~~---l---------------~---~~~~ 239 (516)
..+...++.. ... ...|.- +.......| + . ....
T Consensus 281 p~l~~l~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~ 359 (746)
T KOG0354|consen 281 PLLQQLQEEGLIE-ISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVA 359 (746)
T ss_pred HHHHHHHhcCccc-cccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccc
Confidence 1111111110 000 000000 000000000 0 0 0000
Q ss_pred HHHH-HH-----------hhh--------C----cchHHHHH-HHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----
Q 010184 240 KKKQ-AL-----------YVM--------N----PNKFRACE-FLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----- 289 (516)
Q Consensus 240 ~~~~-~l-----------~~~--------~----~~k~~~~~-~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~----- 289 (516)
.++. .. ..+ + ..|++.+. .+.+..+..+..++|||+.++..+..|...|.
T Consensus 360 ~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~ 439 (746)
T KOG0354|consen 360 LKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHEL 439 (746)
T ss_pred hhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhc
Confidence 0000 00 000 1 13444444 44444445777899999999999999988884
Q ss_pred ---CceEec--------CCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccc
Q 010184 290 ---KPMIYG--------ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358 (516)
Q Consensus 290 ---~~~i~g--------~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R 358 (516)
...+.| +|++.+.+++++.|++| .++|||||++|++|||++++|.||.|+... |+...+||.|| ||
T Consensus 440 ~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLVATSV~EEGLDI~ec~lVIcYd~~s-npIrmIQrrGR-gR 516 (746)
T KOG0354|consen 440 GIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLVATSVAEEGLDIGECNLVICYDYSS-NPIRMVQRRGR-GR 516 (746)
T ss_pred ccccceeeeccccccccccCHHHHHHHHHHHhCC-CccEEEEecchhccCCcccccEEEEecCCc-cHHHHHHHhcc-cc
Confidence 112333 57889999999999997 999999999999999999999999997765 89999999999 99
Q ss_pred cC
Q 010184 359 AK 360 (516)
Q Consensus 359 ~g 360 (516)
+.
T Consensus 517 a~ 518 (746)
T KOG0354|consen 517 AR 518 (746)
T ss_pred cc
Confidence 88
No 50
>PRK00254 ski2-like helicase; Provisional
Probab=99.98 E-value=1.3e-30 Score=288.40 Aligned_cols=297 Identities=18% Similarity=0.225 Sum_probs=198.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH-h---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.+|+|+|.+++...+..+ ++.++++|||+|||+++..++. . .++++|+|+|+++|+.|+.++|..|.. .+..|
T Consensus 22 ~~l~~~Q~~ai~~~~~~g--~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~-~g~~v 98 (720)
T PRK00254 22 EELYPPQAEALKSGVLEG--KNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEK-LGLRV 98 (720)
T ss_pred CCCCHHHHHHHHHHHhCC--CcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhh-cCCEE
Confidence 479999999999755554 4999999999999999966553 2 357899999999999999999998743 24578
Q ss_pred EEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc-cc
Q 010184 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (516)
Q Consensus 100 ~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~-~~ 172 (516)
..++|+.... +.+..+|+|+||+.+....++.. .++ .++++||+||+|.+... .+..++..+. ..
T Consensus 99 ~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~------~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 99 AMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGS------SWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred EEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCc------hhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 8888875422 23567999999998865433211 123 56789999999999754 3444444443 45
Q ss_pred eEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeE-EEeccCCHHHHHHHHHhhhhHHHHHHhhhCcc
Q 010184 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (516)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~-~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 251 (516)
++++||||+.... ++..+++...+...+ .++... .+... ... +. ......+. . ..
T Consensus 171 qiI~lSATl~n~~----~la~wl~~~~~~~~~---------rpv~l~~~~~~~-~~~----~~-~~~~~~~~-~----~~ 226 (720)
T PRK00254 171 QILGLSATVGNAE----ELAEWLNAELVVSDW---------RPVKLRKGVFYQ-GFL----FW-EDGKIERF-P----NS 226 (720)
T ss_pred cEEEEEccCCCHH----HHHHHhCCccccCCC---------CCCcceeeEecC-Cee----ec-cCcchhcc-h----HH
Confidence 7899999996432 334455433222111 111110 00000 000 00 00000000 0 00
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh--------------------------------------CCceE
Q 010184 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL--------------------------------------RKPMI 293 (516)
Q Consensus 252 k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L--------------------------------------~~~~i 293 (516)
....+..++ ..+.++||||+++..++.++..| ++.++
T Consensus 227 ~~~~~~~~i-----~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~h 301 (720)
T PRK00254 227 WESLVYDAV-----KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFH 301 (720)
T ss_pred HHHHHHHHH-----HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEe
Confidence 011222222 24679999999998876654333 36689
Q ss_pred ecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe-------cCCCCCHHHHHHHhhcccccCC
Q 010184 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI-------SSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 294 ~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~-------~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
||++++++|..+++.|++| .++|||||+++++|+|+|..++||.. ..+.-+...+.||+||+||.|.
T Consensus 302 Hagl~~~eR~~ve~~F~~G-~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 302 HAGLGRTERVLIEDAFREG-LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 9999999999999999998 99999999999999999999988852 1111145689999999999883
No 51
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-30 Score=247.86 Aligned_cols=298 Identities=18% Similarity=0.215 Sum_probs=221.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-cC-----CCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~-----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.++.|.|..++++++.+. +||-++.||+|||......+.+ +. -=+||++||++|+.|..++|......-..
T Consensus 28 ~~pTpiQ~~cIpkILeGr---dcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILEGR---DCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCCchHhhhhHHHhccc---ccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 478999999999999875 9999999999999998877644 32 23999999999999999999987666667
Q ss_pred cEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc---
Q 010184 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--- 169 (516)
Q Consensus 98 ~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~--- 169 (516)
+++++.|+... .+...++|+|+|++.+........+. ..+. ..+..++|+|||+++.+..|...+..+
T Consensus 105 K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~---~~~~-~~rlkflVlDEADrvL~~~f~d~L~~i~e~ 180 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGV---CSWI-FQRLKFLVLDEADRVLAGCFPDILEGIEEC 180 (442)
T ss_pred eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCcc---chhh-hhceeeEEecchhhhhccchhhHHhhhhcc
Confidence 88999988653 24677999999999997764432110 1111 255679999999999998877766543
Q ss_pred -cc-ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEe----ccCCHHHHHHHHHhhhhHHHH
Q 010184 170 -KS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW----CPMTKEFFSEYLKKENSKKKQ 243 (516)
Q Consensus 170 -~~-~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~----~~~~~~~~~~~l~~~~~~~~~ 243 (516)
+. +..++||||.... +..+++-..-. + .+..+. .+..+..+..|+
T Consensus 181 lP~~RQtLlfSATitd~------i~ql~~~~i~k---------~-----~a~~~e~~~~vstvetL~q~yI--------- 231 (442)
T KOG0340|consen 181 LPKPRQTLLFSATITDT------IKQLFGCPITK---------S-----IAFELEVIDGVSTVETLYQGYI--------- 231 (442)
T ss_pred CCCccceEEEEeehhhH------HHHhhcCCccc---------c-----cceEEeccCCCCchhhhhhhee---------
Confidence 33 4789999998532 22222211100 0 000110 111223333443
Q ss_pred HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEE
Q 010184 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (516)
Q Consensus 244 ~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vL 318 (516)
.+....|-..+-.++...+......++||+|+...++.++..|+ +..+||.+++.+|...+.+|+.+ ..++|
T Consensus 232 --~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~il 308 (442)
T KOG0340|consen 232 --LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARIL 308 (442)
T ss_pred --ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEE
Confidence 12222333455566655553467789999999999999998883 55799999999999999999998 99999
Q ss_pred EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 319 v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+||+++++|+|+|.++.||+++-| ..|..|+||+||+.|+|.
T Consensus 309 iaTDVAsRGLDIP~V~LVvN~diP-r~P~~yiHRvGRtARAGR 350 (442)
T KOG0340|consen 309 IATDVASRGLDIPTVELVVNHDIP-RDPKDYIHRVGRTARAGR 350 (442)
T ss_pred EEechhhcCCCCCceeEEEecCCC-CCHHHHHHhhcchhcccC
Confidence 999999999999999999999766 599999999999999995
No 52
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.7e-31 Score=262.33 Aligned_cols=327 Identities=18% Similarity=0.184 Sum_probs=218.4
Q ss_pred CCCCCHHHHHHHHHHHhCC------CCcccEEEecCCCcHHHHHHHHHHhc-C------CCEEEEEeChhhHHHHHHHHH
Q 010184 23 HAQPRPYQEKSLSKMFGNG------RARSGIIVLPCGAGKSLVGVSAACRI-K------KSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~------~~~~~il~~~tG~GKTl~~i~~i~~~-~------~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
...++|.|...+.+++... ++++.++.+|||+|||+++..+|-++ . -+++||+|+++|+.|.++.|.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~ 236 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFK 236 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHH
Confidence 3578999999999986542 36788999999999999998877443 1 369999999999999999999
Q ss_pred HhhCCCCCcEEEEeCCcccc-----c-cC----CCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc
Q 010184 90 LWSTIQDDQICRFTSDSKER-----F-RG----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (516)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~-----~-~~----~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (516)
+|....+..|+..+|...-. + .. ..+|+|+||+.|...... .+.+.-.+..++|+|||+++.+
T Consensus 237 ~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-------~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 237 RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-------TKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-------CCCcchhhceEEEechHHHHHH
Confidence 99888887888888764311 1 12 348999999988654332 1223235567999999999999
Q ss_pred hhHHHHHhhcccc----eEEEE---------eccCCCCccc-------hhhhHhhhCCccccccHHHHHhCCCcccceeE
Q 010184 160 HMFRKVISLTKSH----CKLGL---------TATLVREDER-------ITDLNFLIGPKLYEANWLDLVKGGFIANVQCA 219 (516)
Q Consensus 160 ~~~~~~l~~~~~~----~~l~L---------TATp~~~~~~-------~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~ 219 (516)
..|+..+..+..+ .++.+ +++|.-..+. ...+..++-+..+......+.+-..- ..+..
T Consensus 310 qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~-~Prl~ 388 (620)
T KOG0350|consen 310 QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH-IPRLF 388 (620)
T ss_pred HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC-CCceE
Confidence 8887665543222 11111 1122110000 11111222222222222222221111 11111
Q ss_pred EEeccC-----CHHHHHHHHHhhhhHHHHHHhhhCc-chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC----
Q 010184 220 EVWCPM-----TKEFFSEYLKKENSKKKQALYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---- 289 (516)
Q Consensus 220 ~v~~~~-----~~~~~~~~l~~~~~~~~~~l~~~~~-~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~---- 289 (516)
.+..++ .+.+...+. .+..+ -|-..+..++... ...++|+|++++..+..++..|+
T Consensus 389 ~v~~~~~~ryslp~~l~~~~-----------vv~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~~ 454 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSSLSHRL-----------VVTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEFC 454 (620)
T ss_pred EeecccceeeecChhhhhce-----------eecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHhc
Confidence 111111 111111111 11111 2223444555443 47899999999999999998884
Q ss_pred -----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 010184 290 -----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (516)
Q Consensus 290 -----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~ 364 (516)
+..+.|..+...|.+.++.|..| ++++||||+++++|+|+.++++||.|++|. +...|+||+||++|+|+
T Consensus 455 ~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcSD~laRGiDv~~v~~VINYd~P~-~~ktyVHR~GRTARAgq--- 529 (620)
T KOG0350|consen 455 SDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICSDALARGIDVNDVDNVINYDPPA-SDKTYVHRAGRTARAGQ--- 529 (620)
T ss_pred cccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEehhhhhcCCcccccceEeecCCCc-hhhHHHHhhcccccccC---
Confidence 34589999999999999999998 999999999999999999999999998875 99999999999999995
Q ss_pred ccccCCCCceeEEEEEEEcCCc
Q 010184 365 DRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 365 ~~~~~~~~~~~~~~y~lv~~~t 386 (516)
..+.|+|++...
T Consensus 530 ----------~G~a~tll~~~~ 541 (620)
T KOG0350|consen 530 ----------DGYAITLLDKHE 541 (620)
T ss_pred ----------CceEEEeecccc
Confidence 346678777443
No 53
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=2e-31 Score=263.29 Aligned_cols=293 Identities=16% Similarity=0.145 Sum_probs=211.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.++.+.|...+..++.+. +.+..+-||+|||++++.++-+. +-.+||||||++|+.|...+.+..+.
T Consensus 103 ~~MT~VQ~~ti~pll~gk---Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGK---DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred cchhHHHHhhcCccCCCc---cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 368899999999888775 89999999999999988766322 12499999999999999999998776
Q ss_pred CC-CCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh
Q 010184 94 IQ-DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (516)
Q Consensus 94 ~~-~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (516)
.. ...+....|+... ++...+.|+|+||+.|.....+... ++ .+...++|+|||+++....|++-+.
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~------f~-~r~~k~lvlDEADrlLd~GF~~di~ 252 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSG------FL-FRNLKCLVLDEADRLLDIGFEEDVE 252 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCc------ch-hhccceeEeecchhhhhcccHHHHH
Confidence 65 5567777777553 2445899999999988654332211 11 2334689999999999887765444
Q ss_pred h----cc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEec-----cCCHHHHHHHHHhh
Q 010184 168 L----TK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-----PMTKEFFSEYLKKE 237 (516)
Q Consensus 168 ~----~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~-----~~~~~~~~~~l~~~ 237 (516)
. ++ .++.+++|||....-.....+ .+.+ ++..+.| +-+.+....
T Consensus 253 ~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~--------------------~L~~-d~~~v~~~d~~~~~The~l~Q----- 306 (543)
T KOG0342|consen 253 QIIKILPKQRQTLLFSATQPSKVKDLARG--------------------ALKR-DPVFVNVDDGGERETHERLEQ----- 306 (543)
T ss_pred HHHHhccccceeeEeeCCCcHHHHHHHHH--------------------hhcC-CceEeecCCCCCcchhhcccc-----
Confidence 3 33 357799999986433321111 0111 1111111 111111111
Q ss_pred hhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcC
Q 010184 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS 312 (516)
Q Consensus 238 ~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~ 312 (516)
..+.+....++..+-.+++.+. ...|+||||.+.......++.|+ +.-|||+.++..|..+..+|++.
T Consensus 307 -----gyvv~~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka 379 (543)
T KOG0342|consen 307 -----GYVVAPSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA 379 (543)
T ss_pred -----eEEeccccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc
Confidence 0111222233456666666664 23899999999998888888774 45699999999999999999997
Q ss_pred CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 313 ~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+-.|||||+++++|+|+|+++.||++++| .++.+|+||+||++|.|.
T Consensus 380 -esgIL~cTDVaARGlD~P~V~~VvQ~~~P-~d~~~YIHRvGRTaR~gk 426 (543)
T KOG0342|consen 380 -ESGILVCTDVAARGLDIPDVDWVVQYDPP-SDPEQYIHRVGRTAREGK 426 (543)
T ss_pred -ccceEEecchhhccCCCCCceEEEEeCCC-CCHHHHHHHhccccccCC
Confidence 99999999999999999999999999877 599999999999999773
No 54
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=3.6e-30 Score=283.54 Aligned_cols=296 Identities=17% Similarity=0.188 Sum_probs=199.3
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
..++|+|+|.++++.+..+. +.++++|||+|||+++..++.. .++++++++|+++|+.|+.+++.++... +..
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~---nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~-g~~ 94 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGE---NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL-GMR 94 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCC---cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc-CCe
Confidence 45789999999999976554 8999999999999998876643 2578999999999999999999986432 446
Q ss_pred EEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhc---
Q 010184 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT--- 169 (516)
Q Consensus 99 v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~--- 169 (516)
+...+|+.... .....+|+|+|++.+.....+. ...+ .++++||+||+|++.+. .+..++..+
T Consensus 95 v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~------~~~l--~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 95 VKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD------PYII--NDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred EEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC------hhHH--hhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 77777764322 2245799999998875543321 1122 56789999999999754 334343322
Q ss_pred -ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhh
Q 010184 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (516)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~ 248 (516)
...++++||||+.+.. ++..+++...+...+. ..+........ ... +. ....
T Consensus 167 ~~~~riI~lSATl~n~~----~la~wl~~~~~~~~~r-------~vpl~~~i~~~--~~~----~~-~~~~--------- 219 (674)
T PRK01172 167 NPDARILALSATVSNAN----ELAQWLNASLIKSNFR-------PVPLKLGILYR--KRL----IL-DGYE--------- 219 (674)
T ss_pred CcCCcEEEEeCccCCHH----HHHHHhCCCccCCCCC-------CCCeEEEEEec--Cee----ee-cccc---------
Confidence 2346899999996432 3444444333221110 01111111100 000 00 0000
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh------------------------------CCceEecCCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------RKPMIYGATS 298 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L------------------------------~~~~i~g~~~ 298 (516)
..... +..++.... ..+.++||||+++..++.++..| ++.++||+++
T Consensus 220 -~~~~~-~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 220 -RSQVD-INSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred -ccccc-HHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 00011 122333222 45779999999999988887765 2446899999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCC--------CCCHHHHHHHhhcccccCC
Q 010184 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH--------AGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 299 ~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~--------~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++|..+++.|+++ .++|||||+++++|+|+|+..+||. +.+ +-|..++.||+||+||.|.
T Consensus 297 ~~eR~~ve~~f~~g-~i~VLvaT~~la~Gvnipa~~VII~-~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 297 NEQRRFIEEMFRNR-YIKVIVATPTLAAGVNLPARLVIVR-DITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred HHHHHHHHHHHHcC-CCeEEEecchhhccCCCcceEEEEc-CceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 99999999999997 9999999999999999997655553 210 1278899999999999984
No 55
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=1.2e-30 Score=259.02 Aligned_cols=310 Identities=17% Similarity=0.212 Sum_probs=215.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH----Hhc-----------CCCEEEEEeChhhHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CRI-----------KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~~-----------~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..+.|.|..++.-+++++ +.|.+++||||||...+..+ ..+ +...+|++||++|+.|..+|-
T Consensus 266 ~eptpIqR~aipl~lQ~r---D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNR---DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCCchHHHhhccchhccC---CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 368999999999888775 89999999999997765433 111 346999999999999999999
Q ss_pred HHhhCCCCCcEEEEeCCcc-c----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---
Q 010184 89 KLWSTIQDDQICRFTSDSK-E----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--- 160 (516)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~-~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--- 160 (516)
.+|......++..+.|+.. + .+...+.|+|+||..|...+. ...-.+ ...-+||+|||+++.+.
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Le------nr~lvl--~qctyvvldeadrmiDmgfE 414 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLE------NRYLVL--NQCTYVVLDEADRMIDMGFE 414 (673)
T ss_pred HHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHH------HHHHHh--ccCceEeccchhhhhccccc
Confidence 9887655556655555432 2 245679999999998876532 222222 55679999999999864
Q ss_pred -hHHHHHhhccc--------------------------ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCc
Q 010184 161 -MFRKVISLTKS--------------------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI 213 (516)
Q Consensus 161 -~~~~~l~~~~~--------------------------~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l 213 (516)
.+..++..++. +..+.||||....-+.++. ..+..|..... |.+
T Consensus 415 ~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar-~ylr~pv~vti--------g~~ 485 (673)
T KOG0333|consen 415 PDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR-SYLRRPVVVTI--------GSA 485 (673)
T ss_pred HHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH-HHhhCCeEEEe--------ccC
Confidence 45566665532 2346666665533332111 01111111100 111
Q ss_pred ccceeEEEeccCCHHHHHHHHHhhhhH-HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC---
Q 010184 214 ANVQCAEVWCPMTKEFFSEYLKKENSK-KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--- 289 (516)
Q Consensus 214 ~~~~~~~v~~~~~~~~~~~~l~~~~~~-~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~--- 289 (516)
.. ...+ .+.........|+..+..++... ....+|||+|.+..++.+|+.|.
T Consensus 486 gk---------------------~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 486 GK---------------------PTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAG 541 (673)
T ss_pred CC---------------------CccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhcc
Confidence 00 0000 11112233344555666666433 35689999999999999999994
Q ss_pred --CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccc
Q 010184 290 --KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367 (516)
Q Consensus 290 --~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~ 367 (516)
+..+||+-++++|..+++.|+++ ...|||||+++++|||+|++++||+|+.. +|..+|.||+||+||+|.
T Consensus 542 ~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIpnVSlVinydma-ksieDYtHRIGRTgRAGk------ 613 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIPNVSLVINYDMA-KSIEDYTHRIGRTGRAGK------ 613 (673)
T ss_pred ceEEEeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCCccceeeecchh-hhHHHHHHHhcccccccc------
Confidence 56799999999999999999998 99999999999999999999999999766 599999999999999994
Q ss_pred cCCCCceeEEEEEEEcCCchhhhHH
Q 010184 368 AGGKEEYNAFFYSLVSTDTQEMFYS 392 (516)
Q Consensus 368 ~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (516)
. ....++++....+.+|.
T Consensus 614 -----~--GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 614 -----S--GTAISFLTPADTAVFYD 631 (673)
T ss_pred -----C--ceeEEEeccchhHHHHH
Confidence 2 23345666555554443
No 56
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.97 E-value=6.7e-31 Score=275.21 Aligned_cols=345 Identities=18% Similarity=0.198 Sum_probs=242.9
Q ss_pred ccccCccCCC-CCCccccCCCCCCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEE
Q 010184 3 EEYDFRNDNV-NPDLNMELKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLC 73 (516)
Q Consensus 3 ~eydf~~~~~-~~~~~~~l~~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lv 73 (516)
+.|..+.... .+...++.-....+|+||..|++.+. ..++ +..+|+|.||+|||.+|++++..+ .|++|+
T Consensus 142 e~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~-~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLF 220 (875)
T COG4096 142 EGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQ-NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLF 220 (875)
T ss_pred HHHhccccccccccccCcccccccchHHHHHHHHHHHHHHhcCC-ceEEEEEecCCCcceeHHHHHHHHHhcchhheeeE
Confidence 3444444444 44456666667899999999999764 4444 459999999999999999998554 379999
Q ss_pred EEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEcc
Q 010184 74 LATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 153 (516)
Q Consensus 74 l~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDE 153 (516)
|+.+++|++|-+..|..+. |......+..+.. ..+.+.|.|+||+.+........ .....+....|++||+||
T Consensus 221 LaDR~~Lv~QA~~af~~~~--P~~~~~n~i~~~~--~~~s~~i~lsTyqt~~~~~~~~~---~~~~~f~~g~FDlIvIDE 293 (875)
T COG4096 221 LADRNALVDQAYGAFEDFL--PFGTKMNKIEDKK--GDTSSEIYLSTYQTMTGRIEQKE---DEYRRFGPGFFDLIVIDE 293 (875)
T ss_pred EechHHHHHHHHHHHHHhC--CCccceeeeeccc--CCcceeEEEeehHHHHhhhhccc---cccccCCCCceeEEEech
Confidence 9999999999999999984 3333333332221 12357899999999977544321 223344456789999999
Q ss_pred CccCCchhHHHHHhhcccceEEEEeccCCCCccchhhhHhhh-CCccccccHHHHHhCCCcccceeEEEeccCCHHHHH-
Q 010184 154 VHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS- 231 (516)
Q Consensus 154 aH~~~~~~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~-gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~- 231 (516)
||+.....++.++..+.+. .+||||||...-+. +-..+| |..+|.++..+.++.|+++++....+......+.+.
T Consensus 294 aHRgi~~~~~~I~dYFdA~-~~gLTATP~~~~d~--~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~ 370 (875)
T COG4096 294 AHRGIYSEWSSILDYFDAA-TQGLTATPKETIDR--STYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKP 370 (875)
T ss_pred hhhhHHhhhHHHHHHHHHH-HHhhccCccccccc--ccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCc
Confidence 9999999999999998766 57779999754433 334456 999999999999999999998877776655322111
Q ss_pred ------HHHHhh-h--------hHHHHHHhhhCcchHHHHHHHHHHHhh-cC---CCeEEEEeccHHHHHHHHHHhC---
Q 010184 232 ------EYLKKE-N--------SKKKQALYVMNPNKFRACEFLIRFHEQ-QR---GDKIIVFADNLFALTEYAMKLR--- 289 (516)
Q Consensus 232 ------~~l~~~-~--------~~~~~~l~~~~~~k~~~~~~ll~~~~~-~~---~~k~iVF~~~~~~~~~l~~~L~--- 289 (516)
+-+... . ...-....+....+..++..+..+... .. -.|+||||.+..|++.+...|.
T Consensus 371 ~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~y 450 (875)
T COG4096 371 DAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEY 450 (875)
T ss_pred CccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhC
Confidence 000000 0 000000111122233344444455441 02 3699999999999999999994
Q ss_pred -------CceEecCCCHHHHHHHHHHHhcC-CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 290 -------KPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 290 -------~~~i~g~~~~~eR~~~l~~F~~~-~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+..|+|+.. +-+..++.|..+ +-.+|.++++++.+|+|+|.+-++|++ ....|..-|.|++||+-|..+
T Consensus 451 pe~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~-r~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 451 PEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFD-RKVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred ccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeeh-hhhhhHHHHHHHhcCccccCc
Confidence 235777655 445668888775 345677778999999999999999987 456799999999999999875
No 57
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=257.19 Aligned_cols=296 Identities=17% Similarity=0.173 Sum_probs=211.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----C----CCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----K----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
..|.|.|..+|+-.+-+. +.+-++.||+|||-+++.++... + .++||||||++|+-|...-+++...+
T Consensus 202 ~~PTpIQ~a~IPvallgk---DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 202 KKPTPIQVATIPVALLGK---DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCCchhhhcccHHhhcc---hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 368999999999666543 78889999999999988877432 1 37999999999999988776665555
Q ss_pred CCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----H
Q 010184 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----V 165 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~ 165 (516)
....++...|+..-+ +...++|||+||+.+....+.+ ..+.-..+-++|+|||+++....|.. +
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs-------~sf~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS-------PSFNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-------CCccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 556888888886532 3467999999999886654433 22333556789999999999876654 4
Q ss_pred Hhhcc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEec-cCCHHHHHHHHHhhhhHHHH
Q 010184 166 ISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-PMTKEFFSEYLKKENSKKKQ 243 (516)
Q Consensus 166 l~~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~-~~~~~~~~~~l~~~~~~~~~ 243 (516)
+..++ .++.+++|||...+- .+|..+- .-.|+.+..-.. ...+...++|++....+
T Consensus 352 i~lcpk~RQTmLFSATMteeV---kdL~slS----------------L~kPvrifvd~~~~~a~~LtQEFiRIR~~r--- 409 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSATMTEEV---KDLASLS----------------LNKPVRIFVDPNKDTAPKLTQEFIRIRPKR--- 409 (691)
T ss_pred HHhccccccceeehhhhHHHH---HHHHHhh----------------cCCCeEEEeCCccccchhhhHHHheecccc---
Confidence 44443 457799999986322 2222211 111111111000 11122233444111000
Q ss_pred HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEE
Q 010184 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (516)
Q Consensus 244 ~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vL 318 (516)
.-.+...+..|+...- .+++|||+.+...+..+--.|+ +.-+||++++.+|.+.++.|++. .+++|
T Consensus 410 -----e~dRea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvL 480 (691)
T KOG0338|consen 410 -----EGDREAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVL 480 (691)
T ss_pred -----ccccHHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEE
Confidence 0112245556665443 5789999999999887766653 55699999999999999999998 99999
Q ss_pred EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 319 v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|||+++++|||++.+.+||+|..| .+...|+||+||+.|+|.
T Consensus 481 iaTDvAsRGLDI~gV~tVINy~mP-~t~e~Y~HRVGRTARAGR 522 (691)
T KOG0338|consen 481 IATDVASRGLDIEGVQTVINYAMP-KTIEHYLHRVGRTARAGR 522 (691)
T ss_pred EEechhhccCCccceeEEEeccCc-hhHHHHHHHhhhhhhccc
Confidence 999999999999999999999776 599999999999999996
No 58
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.8e-31 Score=260.68 Aligned_cols=329 Identities=18% Similarity=0.206 Sum_probs=208.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------------CCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+...|..+|..++++ +++++-++||+|||+.++.++-+. +--+||||||++|+.|.++.+.+..
T Consensus 159 ~pTsVQkq~IP~lL~g---rD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEG---RDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred ccchHhhcchhhhhcC---cceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 5778899999999985 499999999999999999877321 1239999999999999999998864
Q ss_pred CCCC-CcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH--
Q 010184 93 TIQD-DQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-- 164 (516)
Q Consensus 93 ~~~~-~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~-- 164 (516)
.-.. ..-+.+.|+.+.+ +..+..|+|+||+.|....+. -..+......++|+||++++..-.|.+
T Consensus 236 ~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLkn-------T~~i~~s~LRwlVlDEaDrlleLGfekdi 308 (708)
T KOG0348|consen 236 KPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKN-------TKSIKFSRLRWLVLDEADRLLELGFEKDI 308 (708)
T ss_pred cCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhc-------cchheeeeeeEEEecchhHHHhccchhhH
Confidence 3211 1224455554432 457899999999998765432 233334567899999999998755543
Q ss_pred --HHhhccc--------------ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccC-CH
Q 010184 165 --VISLTKS--------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TK 227 (516)
Q Consensus 165 --~l~~~~~--------------~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~-~~ 227 (516)
++..+.. ...++||||+...-....++ .+-.|.....+... .+..+...-....++- ..
T Consensus 309 t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~-sLkDpv~I~ld~s~---~~~~p~~~a~~ev~~~~~~ 384 (708)
T KOG0348|consen 309 TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL-SLKDPVYISLDKSH---SQLNPKDKAVQEVDDGPAG 384 (708)
T ss_pred HHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc-cccCceeeeccchh---hhcCcchhhhhhcCCcccc
Confidence 3433311 24588999986433222221 12223222100000 0000000000000000 00
Q ss_pred HHHHHHHHhhhhHHHHHHhhhCcchHH--HHHHHH-HHHhhcCCCeEEEEeccHHHHHHHHHHh----------------
Q 010184 228 EFFSEYLKKENSKKKQALYVMNPNKFR--ACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKL---------------- 288 (516)
Q Consensus 228 ~~~~~~l~~~~~~~~~~l~~~~~~k~~--~~~~ll-~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------------- 288 (516)
+.+..|. ......+. +..-|.|++ .+..++ +........|+|||....+.++-=+..|
T Consensus 385 ~~l~~~~-iPeqL~qr--y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~ 461 (708)
T KOG0348|consen 385 DKLDSFA-IPEQLLQR--YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD 461 (708)
T ss_pred ccccccc-CcHHhhhc--eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc
Confidence 0111111 11111111 122233333 333333 3333234569999988877766544444
Q ss_pred -----------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhccc
Q 010184 289 -----------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357 (516)
Q Consensus 289 -----------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~ 357 (516)
+...+||+|.+++|..+++.|... .-.||+||+++++|+|+|.+++||+|++|+ ++.+|+||+||+.
T Consensus 462 s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~-~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~-s~adylHRvGRTA 539 (708)
T KOG0348|consen 462 SEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS-RRAVLLCTDVAARGLDLPHVGLVVQYDPPF-STADYLHRVGRTA 539 (708)
T ss_pred cCCChhhhhcceEEEecCchhHHHHHHHHHhhccc-cceEEEehhhhhccCCCCCcCeEEEeCCCC-CHHHHHHHhhhhh
Confidence 123589999999999999999997 667999999999999999999999999886 9999999999999
Q ss_pred ccCCCccccccCCCCceeEEEEEEEc
Q 010184 358 RAKGKLEDRMAGGKEEYNAFFYSLVS 383 (516)
Q Consensus 358 R~g~~~~~~~~~~~~~~~~~~y~lv~ 383 (516)
|+| +...+..|-+-+
T Consensus 540 RaG-----------~kG~alLfL~P~ 554 (708)
T KOG0348|consen 540 RAG-----------EKGEALLFLLPS 554 (708)
T ss_pred hcc-----------CCCceEEEeccc
Confidence 999 555666554433
No 59
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=7.3e-30 Score=235.67 Aligned_cols=305 Identities=17% Similarity=0.177 Sum_probs=224.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh------cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
+|...|..|+..++.+. +.|..+..|+|||.+...-++. ..-.+||+.|+++|+.|..+.+....+.-..+
T Consensus 49 kPS~IQqrAi~~IlkGr---dViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGR---DVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred CchHHHhhhhhhhhccc---ceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 46678999999998764 8999999999999764332222 12479999999999999999998876655556
Q ss_pred EEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----HHhhc
Q 010184 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (516)
Q Consensus 99 v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~~~ 169 (516)
+....|+.. .++.-+.+++..||+.+....+| ..|+.+...++|+|||+.+.++.|.. +.+.+
T Consensus 126 ~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 666666544 34456789999999988665443 34555778899999999999875543 55666
Q ss_pred c-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhh
Q 010184 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (516)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~ 248 (516)
+ ..+++++|||.+.+--. ..+.-..-|+......-+++.+..+.|. +.+.
T Consensus 198 p~~~Qvv~~SATlp~eile-------------------mt~kfmtdpvrilvkrdeltlEgIKqf~----------v~ve 248 (400)
T KOG0328|consen 198 PPGAQVVLVSATLPHEILE-------------------MTEKFMTDPVRILVKRDELTLEGIKQFF----------VAVE 248 (400)
T ss_pred CCCceEEEEeccCcHHHHH-------------------HHHHhcCCceeEEEecCCCchhhhhhhe----------eeec
Confidence 5 66889999999742211 1111112233333333344545444443 1122
Q ss_pred Ccc-hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 249 NPN-KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 249 ~~~-k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
..+ |++.+-.|-..+. -..++|||+++..++.+.+.+. +..+||+++++||.++...|+.+ +.+||++|+
T Consensus 249 ~EewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLitTD 324 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLITTD 324 (400)
T ss_pred hhhhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEEEec
Confidence 222 6666767766654 4679999999999999999983 45699999999999999999998 999999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCch
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~ 387 (516)
+.++|+|+|.++.||.|+-| .++..|+||+||.||-|. ..+..++|..+..
T Consensus 325 VwaRGiDv~qVslviNYDLP-~nre~YIHRIGRSGRFGR-------------kGvainFVk~~d~ 375 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLP-NNRELYIHRIGRSGRFGR-------------KGVAINFVKSDDL 375 (400)
T ss_pred hhhccCCcceeEEEEecCCC-ccHHHHhhhhccccccCC-------------cceEEEEecHHHH
Confidence 99999999999999999776 599999999999999995 3455667765443
No 60
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.97 E-value=4.6e-29 Score=271.86 Aligned_cols=340 Identities=17% Similarity=0.159 Sum_probs=223.7
Q ss_pred CCCCCHHHHHHHHHHHhC---C----CCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHH
Q 010184 23 HAQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~----~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
+.-+|+||..|+++++.. + ..++|+|++|||+|||++++.++..+ ..++|||||+..|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 345899999999987543 1 23689999999999999999887553 25799999999999999999999
Q ss_pred hhCCCCCcEEEEeC--Cccccc-cCCCcEEEEchhhhhccCCCChhHHHHHHHHcc-CCccEEEEccCccCCchhHHHHH
Q 010184 91 WSTIQDDQICRFTS--DSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVI 166 (516)
Q Consensus 91 ~~~~~~~~v~~~~~--~~~~~~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~~~~~~~l 166 (516)
+... .+....+ .....+ .....|+|+|++.+..... .....+.. ....+||+||||+.....+.+.+
T Consensus 316 ~~~~---~~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~------~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l 386 (667)
T TIGR00348 316 LQKD---CAERIESIAELKRLLEKDDGGIIITTIQKFDKKLK------EEEEKFPVDRKEVVVIFDEAHRSQYGELAKNL 386 (667)
T ss_pred hCCC---CCcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHh------hhhhccCCCCCCEEEEEEcCccccchHHHHHH
Confidence 8521 1111111 011111 2346899999999965211 11111111 22238999999999988888777
Q ss_pred -hhcccceEEEEeccCCCCccch-h-hhHhhhCCccccccHHHHHhCCCcccceeEEEeccC--CHHH----HHHHHHhh
Q 010184 167 -SLTKSHCKLGLTATLVREDERI-T-DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEF----FSEYLKKE 237 (516)
Q Consensus 167 -~~~~~~~~l~LTATp~~~~~~~-~-~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~--~~~~----~~~~l~~~ 237 (516)
..++...+|||||||.+.++.. . .....+|+.++.++..+++++|++.++.+..+.+.. +.+. +.++....
T Consensus 387 ~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (667)
T TIGR00348 387 KKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELL 466 (667)
T ss_pred HhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhh
Confidence 4677788999999998764331 1 122336789999999999999999998776655432 2221 12221000
Q ss_pred h----hH-----HHH----HHhhhCcchH-HHHHHHHHHHh---hcCCCeEEEEeccHHHHHHHHHHhC----------C
Q 010184 238 N----SK-----KKQ----ALYVMNPNKF-RACEFLIRFHE---QQRGDKIIVFADNLFALTEYAMKLR----------K 290 (516)
Q Consensus 238 ~----~~-----~~~----~l~~~~~~k~-~~~~~ll~~~~---~~~~~k~iVF~~~~~~~~~l~~~L~----------~ 290 (516)
. .. .+. .-...++... .++..+++... ...+.|++|||.++.++..+.+.|. .
T Consensus 467 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~ 546 (667)
T TIGR00348 467 PERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASA 546 (667)
T ss_pred hccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCee
Confidence 0 00 000 0011222222 23444443321 1235899999999999999988862 1
Q ss_pred ceEecCCCHH---------------------HHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHH
Q 010184 291 PMIYGATSHV---------------------ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQE 349 (516)
Q Consensus 291 ~~i~g~~~~~---------------------eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~ 349 (516)
.+++|..... ....++++|++++.+++||+++++.+|+|.|.++++++..+ ..+ ..+
T Consensus 547 vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp-lk~-h~L 624 (667)
T TIGR00348 547 IVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP-LKY-HGL 624 (667)
T ss_pred EEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc-ccc-cHH
Confidence 2344443222 23478999988668899999999999999999999998754 444 457
Q ss_pred HHHhhccccc-CCCccccccCCCCceeEEEEEEEc
Q 010184 350 AQRLGRILRA-KGKLEDRMAGGKEEYNAFFYSLVS 383 (516)
Q Consensus 350 ~Qr~GR~~R~-g~~~~~~~~~~~~~~~~~~y~lv~ 383 (516)
+|++||+.|+ .++|. .+.+++.+.
T Consensus 625 lQai~R~nR~~~~~K~----------~g~IvDy~g 649 (667)
T TIGR00348 625 LQAIARTNRIDGKDKT----------FGLIVDYRG 649 (667)
T ss_pred HHHHHHhccccCCCCC----------CEEEEECcC
Confidence 9999999995 54332 456666554
No 61
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=6e-29 Score=267.38 Aligned_cols=299 Identities=16% Similarity=0.210 Sum_probs=214.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hc--C-----CCEEEEEeChhhHHHHHHHHHHhh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RI--K-----KSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~--~-----~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+|+|.|..|+..+.++. +++|.+|||+|||++|+.++. .. + -.||+|+|.++|.....+.+..|.
T Consensus 21 ~~~t~~Q~~a~~~i~~G~---nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~ 97 (814)
T COG1201 21 TSLTPPQRYAIPEIHSGE---NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPL 97 (814)
T ss_pred CCCCHHHHHHHHHHhCCC---ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHH
Confidence 589999999999998654 999999999999999988762 22 1 259999999999999999999998
Q ss_pred CCCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-------
Q 010184 93 TIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------- 160 (516)
Q Consensus 93 ~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------- 160 (516)
...+..|.+-+|+..+. ....++|+||||+++.-.... .+..+.| ....+||+||.|.+...
T Consensus 98 ~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~----~~~r~~l--~~vr~VIVDEiHel~~sKRG~~Ls 171 (814)
T COG1201 98 RELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNS----PKFRELL--RDVRYVIVDEIHALAESKRGVQLA 171 (814)
T ss_pred HHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcC----HHHHHHh--cCCcEEEeehhhhhhccccchhhh
Confidence 77777888888886533 346799999999999776543 3455555 56779999999999854
Q ss_pred -hHHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 161 -MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
...++.......+++|||||....+.. ..++.|.. . ..+++.-....+.++..+...-..+...
T Consensus 172 l~LeRL~~l~~~~qRIGLSATV~~~~~v---arfL~g~~-~---~~~Iv~~~~~k~~~i~v~~p~~~~~~~~-------- 236 (814)
T COG1201 172 LSLERLRELAGDFQRIGLSATVGPPEEV---AKFLVGFG-D---PCEIVDVSAAKKLEIKVISPVEDLIYDE-------- 236 (814)
T ss_pred hhHHHHHhhCcccEEEeehhccCCHHHH---HHHhcCCC-C---ceEEEEcccCCcceEEEEecCCcccccc--------
Confidence 334444444456899999998743322 22333321 0 0011111112222222111111100000
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC------CceEecCCCHHHHHHHHHHHhcCC
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSR 313 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~~l~~F~~~~ 313 (516)
.....-...+.++++.| ..+|||+|++..++.++..|+ +...||+++.+.|..+.++|++|
T Consensus 237 -------~~~~~~~~~i~~~v~~~-----~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G- 303 (814)
T COG1201 237 -------ELWAALYERIAELVKKH-----RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEG- 303 (814)
T ss_pred -------chhHHHHHHHHHHHhhc-----CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcC-
Confidence 00011123445555443 489999999999999999883 45689999999999999999998
Q ss_pred CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 314 ~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
+.+++|||+.++.|||+-++|.||++.+|. +....+||+||+++.-
T Consensus 304 ~lravV~TSSLELGIDiG~vdlVIq~~SP~-sV~r~lQRiGRsgHr~ 349 (814)
T COG1201 304 ELKAVVATSSLELGIDIGDIDLVIQLGSPK-SVNRFLQRIGRAGHRL 349 (814)
T ss_pred CceEEEEccchhhccccCCceEEEEeCCcH-HHHHHhHhcccccccc
Confidence 899999999999999999999999998874 9999999999987543
No 62
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=258.41 Aligned_cols=313 Identities=16% Similarity=0.138 Sum_probs=213.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-----------------cCCC--EEEEEeChhhHHHHH
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----------------IKKS--CLCLATNAVSVDQWA 85 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-----------------~~~~--~Lvl~P~~~L~~Qw~ 85 (516)
.+.|.|...|..+..+. .+.+-+++||||||+++-.++.. ...+ .||++||++|+.|..
T Consensus 203 ~Pt~IQsl~lp~ai~gk--~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGK--VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CCccchhhcccHhhccc--hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 57888988888877663 37888999999999987554422 1123 899999999999999
Q ss_pred HHHHHhhCCCCCcEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch
Q 010184 86 FQFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (516)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (516)
+.|......+...+..++|+.. +.+...++|||+||+.|+...... ..++..+ .+..++|+||++++...
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~---n~~l~~~--k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEED---NTHLGNF--KKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhh---hhhhhhh--hhceEEEEccHHHHhhh
Confidence 9999887777778888888843 223457899999999998765433 2234444 56789999999999875
Q ss_pred ----hHHHHHhhcc------cceEEEEeccCCCCccchhhhHhhhCCc----cccccHHHHHh-CCCcccceeEEEeccC
Q 010184 161 ----MFRKVISLTK------SHCKLGLTATLVREDERITDLNFLIGPK----LYEANWLDLVK-GGFIANVQCAEVWCPM 225 (516)
Q Consensus 161 ----~~~~~l~~~~------~~~~l~LTATp~~~~~~~~~l~~~~gp~----~~~~~~~~l~~-~g~l~~~~~~~v~~~~ 225 (516)
.+..++..+. -++.+.+|||..-.... .+...-..+ -+......+++ -|+..+..+. +.
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~--~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkii----D~ 429 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ--PLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKII----DL 429 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcC--hhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeE----ec
Confidence 4455565554 23679999997521110 000000000 01111112221 1333332211 22
Q ss_pred CHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHH
Q 010184 226 TKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHV 300 (516)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~ 300 (516)
+++... .......++.+....|--.|-+++..+ ..++|||||+++++..|+..|+ ...+|..|.+.
T Consensus 430 t~q~~t-----a~~l~Es~I~C~~~eKD~ylyYfl~ry----PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QK 500 (731)
T KOG0347|consen 430 TPQSAT-----ASTLTESLIECPPLEKDLYLYYFLTRY----PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQK 500 (731)
T ss_pred CcchhH-----HHHHHHHhhcCCccccceeEEEEEeec----CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHH
Confidence 221110 011112223332223333333444322 3599999999999999999985 23589999999
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 301 eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.|.+.+++|++. ...||+||+++++|+|+|.+.+||+|.-| ++...|+||-||+.|++.
T Consensus 501 qRLknLEkF~~~-~~~VLiaTDVAARGLDIp~V~HVIHYqVP-rtseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 501 QRLKNLEKFKQS-PSGVLIATDVAARGLDIPGVQHVIHYQVP-RTSEIYVHRSGRTARANS 559 (731)
T ss_pred HHHHhHHHHhcC-CCeEEEeehhhhccCCCCCcceEEEeecC-CccceeEecccccccccC
Confidence 999999999997 88899999999999999999999999666 588999999999999995
No 63
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=4.4e-28 Score=262.11 Aligned_cols=301 Identities=16% Similarity=0.156 Sum_probs=188.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC-
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ- 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~- 95 (516)
.++++|||.+++..++.+. ...++.+|||+|||.+...+.... .+++++++|+++|+.|..+++.+|....
T Consensus 13 G~~PtpiQ~~~i~~il~G~--~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQ--PPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4569999999999988653 256778999999998654333222 1245557799999999999999886422
Q ss_pred ----------------------CCcEEEEeCCccc-----cccCCCcEEEEchhhhhccC-CCChhHHHHHHHHc---cC
Q 010184 96 ----------------------DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGG-KRSEESEKIIEEIR---NR 144 (516)
Q Consensus 96 ----------------------~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~-~r~~~~~~~~~~l~---~~ 144 (516)
...+..+.|+... .+...++|+|+|.+++.+.. .|.+.....+..+. -.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 2455666776432 13456889999998885532 11111111110110 15
Q ss_pred CccEEEEccCccCCc--hhHHHHHhhc--cc----ceEEEEeccCCCCccchhhhHhhh--CCccccccHHHHHhCCCcc
Q 010184 145 EWGLLLMDEVHVVPA--HMFRKVISLT--KS----HCKLGLTATLVREDERITDLNFLI--GPKLYEANWLDLVKGGFIA 214 (516)
Q Consensus 145 ~~~~vIlDEaH~~~~--~~~~~~l~~~--~~----~~~l~LTATp~~~~~~~~~l~~~~--gp~~~~~~~~~l~~~g~l~ 214 (516)
...++|+||||.... .....++..+ .. .+.++||||+...... +...+ .+........ .+.
T Consensus 171 ~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~---l~~~~~~~p~~i~V~~~------~l~ 241 (844)
T TIGR02621 171 QDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPD---RTTLLSAEDYKHPVLKK------RLA 241 (844)
T ss_pred cceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHH---HHHHHccCCceeecccc------ccc
Confidence 567999999993221 1334444432 11 3689999999643221 21111 2221111111 111
Q ss_pred cceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC---Cc
Q 010184 215 NVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---KP 291 (516)
Q Consensus 215 ~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~---~~ 291 (516)
...... .++...+.... ..+..+..... ..+.++||||+++..++.+++.|. ..
T Consensus 242 a~ki~q-~v~v~~e~Kl~---------------------~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~ 298 (844)
T TIGR02621 242 AKKIVK-LVPPSDEKFLS---------------------TMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKFE 298 (844)
T ss_pred ccceEE-EEecChHHHHH---------------------HHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCCe
Confidence 000011 11111110000 11112222222 346799999999999999999993 56
Q ss_pred eEecCCCHHHHH-----HHHHHHhc----CC------CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcc
Q 010184 292 MIYGATSHVERT-----KILQAFKC----SR------DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRI 356 (516)
Q Consensus 292 ~i~g~~~~~eR~-----~~l~~F~~----~~------~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~ 356 (516)
.+||++++.+|. +++++|++ +. ..++||+|+++++|||++. ++||.... ....|+||+||+
T Consensus 299 lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a---P~esyIQRiGRt 374 (844)
T TIGR02621 299 LLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA---PFESMQQRFGRV 374 (844)
T ss_pred EeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC---CHHHHHHHhccc
Confidence 799999999999 78999987 31 2689999999999999985 88887543 467899999999
Q ss_pred cccCC
Q 010184 357 LRAKG 361 (516)
Q Consensus 357 ~R~g~ 361 (516)
+|.|.
T Consensus 375 gR~G~ 379 (844)
T TIGR02621 375 NRFGE 379 (844)
T ss_pred CCCCC
Confidence 99995
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=8.5e-28 Score=245.97 Aligned_cols=292 Identities=19% Similarity=0.186 Sum_probs=184.8
Q ss_pred cEEEecCCCcHHHHHHHHHHh-----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcc-------------
Q 010184 46 GIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK------------- 107 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~------------- 107 (516)
.++.+|||+|||++++.++.. ...++++++|+++|+.|+.+.+..+++. .+..+++...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEF 78 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhH
Confidence 589999999999999988753 2468999999999999999999998653 2333332211
Q ss_pred cc----------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH---HHHHhhcc--cc
Q 010184 108 ER----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---RKVISLTK--SH 172 (516)
Q Consensus 108 ~~----------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~---~~~l~~~~--~~ 172 (516)
.. .....+|+|+|++.+.....+... ...+. +.....+++|+||+|.+....+ ..++..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~-~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 79 EHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFG-HYEFT-LASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred HHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccc-hHHHH-HHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00 002367999999988654332100 00111 1122347999999999986533 23333332 34
Q ss_pred eEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHH-hhhCcc
Q 010184 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL-YVMNPN 251 (516)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~ 251 (516)
+.+++|||+.. . +..++........ .... +.. +. .... +..... ......
T Consensus 157 ~~i~~SATlp~---~---l~~~~~~~~~~~~------~~~~-~~~------~~--~~~~--------~~~~~~~~~~~~~ 207 (358)
T TIGR01587 157 PILLMSATLPK---F---LKEYAEKIGYVEF------NEPL-DLK------EE--RRFE--------RHRFIKIESDKVG 207 (358)
T ss_pred CEEEEecCchH---H---HHHHHhcCCCccc------ccCC-CCc------cc--cccc--------cccceeecccccc
Confidence 68999999862 1 1111110000000 0000 000 00 0000 000000 001113
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------CceEecCCCHHHHHH----HHHHHhcCCCccEEEE
Q 010184 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTK----ILQAFKCSRDLNTIFL 320 (516)
Q Consensus 252 k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~----~l~~F~~~~~~~vLv~ 320 (516)
+...+..+++.. ..+.++||||+++..++.++..|. +..+||++++.+|.+ +++.|+++ +..+|||
T Consensus 208 ~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilva 284 (358)
T TIGR01587 208 EISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVA 284 (358)
T ss_pred CHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEE
Confidence 344555566544 357899999999999999999982 347999999999976 48899997 8999999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCC
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (516)
|+++++|+|+| +++||.+.. +...|+||+||++|.|.+.. +..++++|.....+
T Consensus 285 T~~~~~GiDi~-~~~vi~~~~---~~~~~iqr~GR~gR~g~~~~-------~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 285 TQVIEASLDIS-ADVMITELA---PIDSLIQRLGRLHRYGRKNG-------ENFEVYIITIAPEG 338 (358)
T ss_pred CcchhceeccC-CCEEEEcCC---CHHHHHHHhccccCCCCCCC-------CCCeEEEEeecCCC
Confidence 99999999996 788887633 57889999999999996433 34567777665544
No 65
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.2e-29 Score=241.81 Aligned_cols=294 Identities=17% Similarity=0.247 Sum_probs=215.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-----Hhc-------CCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-----CRI-------KKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-----~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
++.|.|.+|-.-++++. ++|.++.||+|||+..+... ++. +-.+|+++|+++|+.|..-+..++.
T Consensus 242 KPtPIqSQaWPI~LQG~---DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGI---DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred CCCcchhcccceeecCc---ceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 68889999888777765 89999999999999998743 111 2359999999999999999998875
Q ss_pred CCCCCcEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHH
Q 010184 93 TIQDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (516)
Q Consensus 93 ~~~~~~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~ 164 (516)
--.-..++++.|+.+.. +.+...|+|+||..|.... +-..+.-...-++|+|||+++... ..++
T Consensus 319 yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~--------~~n~i~l~siTYlVlDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQ--------MDNVINLASITYLVLDEADRMLDMGFEPQIRK 390 (629)
T ss_pred hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhh--------hcCeeeeeeeEEEEecchhhhhcccccHHHHH
Confidence 33334678888876532 4577899999999885531 122233356679999999999875 4455
Q ss_pred HHhhcc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHH
Q 010184 165 VISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (516)
Q Consensus 165 ~l~~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 243 (516)
++-.+. .+..++-|||-+..-.+. ....+-.|...-..-.+|. ...+-++.
T Consensus 391 illdiRPDRqtvmTSATWP~~VrrL-a~sY~Kep~~v~vGsLdL~---------------------------a~~sVkQ~ 442 (629)
T KOG0336|consen 391 ILLDIRPDRQTVMTSATWPEGVRRL-AQSYLKEPMIVYVGSLDLV---------------------------AVKSVKQN 442 (629)
T ss_pred HhhhcCCcceeeeecccCchHHHHH-HHHhhhCceEEEeccccee---------------------------eeeeeeee
Confidence 555554 456677788875322221 1112222222111111111 01111222
Q ss_pred HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEE
Q 010184 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (516)
Q Consensus 244 ~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vL 318 (516)
.+......|+..++.++..+ ...+|+||||.....++.|...|. ...+||+-.+.+|+..++.|+.+ .+++|
T Consensus 443 i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrIL 519 (629)
T KOG0336|consen 443 IIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRIL 519 (629)
T ss_pred EEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEE
Confidence 23333445667788888777 578999999999999999988873 45799999999999999999998 99999
Q ss_pred EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 319 v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+|+++++|+|+|++.+|+.|++|. +...|+||+||+||+|.
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~-nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPR-NIEEYVHRVGRTGRAGR 561 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCc-cHHHHHHHhcccccCCC
Confidence 9999999999999999999998885 99999999999999995
No 66
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.4e-29 Score=248.40 Aligned_cols=300 Identities=19% Similarity=0.226 Sum_probs=210.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----------------CCCEEEEEeChhhHHH
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------------KKSCLCLATNAVSVDQ 83 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------------~~~~Lvl~P~~~L~~Q 83 (516)
...-..+.|+|+.+++.+..+ ++.+.+++||+|||...+.++-.. .-.+||++||++|+.|
T Consensus 91 ~~~~~~ptpvQk~sip~i~~G---rdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Q 167 (482)
T KOG0335|consen 91 RSGYTKPTPVQKYSIPIISGG---RDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQ 167 (482)
T ss_pred cccccCCCcceeeccceeecC---CceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhH
Confidence 334468999999999976555 388999999999999998876211 1359999999999999
Q ss_pred HHHHHHHhhCCCCCcEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 84 WAFQFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 84 w~~e~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
.+.+-+++.......+....++.+ ......++|+|+|++.|.....+. .+.....+++|||||+++.
T Consensus 168 i~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g--------~i~l~~~k~~vLDEADrMl 239 (482)
T KOG0335|consen 168 IYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG--------KISLDNCKFLVLDEADRML 239 (482)
T ss_pred HHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc--------eeehhhCcEEEecchHHhh
Confidence 999999998777766666666532 223467999999999887654432 2222445699999999998
Q ss_pred c-h----hHHHHHhhcc-----cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCC-CcccceeEEEeccCCH
Q 010184 159 A-H----MFRKVISLTK-----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGG-FIANVQCAEVWCPMTK 227 (516)
Q Consensus 159 ~-~----~~~~~l~~~~-----~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g-~l~~~~~~~v~~~~~~ 227 (516)
+ . ..++++.... .++.+++|||-..+-.... ..++.....+- ...+-| ...+..-...|+
T Consensus 240 D~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~-~~fl~~~yi~l----aV~rvg~~~~ni~q~i~~V---- 310 (482)
T KOG0335|consen 240 DEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLA-ADFLKDNYIFL----AVGRVGSTSENITQKILFV---- 310 (482)
T ss_pred hhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhH-HHHhhccceEE----EEeeeccccccceeEeeee----
Confidence 7 3 4455555442 4577999999875433311 11111111000 000000 000111112222
Q ss_pred HHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHH-HHh-----hcCCCeEEEEeccHHHHHHHHHHhC-----CceEecC
Q 010184 228 EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIR-FHE-----QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGA 296 (516)
Q Consensus 228 ~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~-~~~-----~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~ 296 (516)
....|...+..++. ... ....++++|||.+++.+..++..|. +.-|||.
T Consensus 311 --------------------~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~ 370 (482)
T KOG0335|consen 311 --------------------NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGD 370 (482)
T ss_pred --------------------cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecch
Confidence 22222223333332 111 0123489999999999999999994 4469999
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 297 ~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
..+.+|.+.++.|+.+ ++.++|+|.++++|+|+|.+.+||.|+-|. .-..|+||+||+||.|.
T Consensus 371 ~tq~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~~V~hVInyDmP~-d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 371 RTQIEREQALNDFRNG-KAPVLVATNVAARGLDIPNVKHVINYDMPA-DIDDYVHRIGRTGRVGN 433 (482)
T ss_pred hhhhHHHHHHHHhhcC-CcceEEEehhhhcCCCCCCCceeEEeecCc-chhhHHHhccccccCCC
Confidence 9999999999999998 999999999999999999999999997764 78999999999999994
No 67
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=5e-28 Score=263.52 Aligned_cols=301 Identities=18% Similarity=0.168 Sum_probs=204.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
+++|.|++++...+-.+ ++.+|++|||+|||++|+.++.. + +.++++|||+++|+.+..++|.+|. .-+.+|.
T Consensus 31 el~~~qq~av~~~~~~~--~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~-~~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSD--ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLE-ELGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCC--CcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHH-hcCCEEE
Confidence 89999999999877664 59999999999999999988743 2 4699999999999999999999442 3345899
Q ss_pred EEeCCccccc--cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhc----c
Q 010184 101 RFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----K 170 (516)
Q Consensus 101 ~~~~~~~~~~--~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~----~ 170 (516)
..+|+..... -..++|+|+||+.+-...++... + ..+.++||+||+|.+..+ ....++..+ .
T Consensus 108 ~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~------~--~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 108 ISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS------W--IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EecCCcccchhhhccCCEEEEchHHhhHhhhcCcc------h--hhcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 9999876432 46789999999999776554322 2 267899999999999875 333333332 2
Q ss_pred cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCc
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 250 (516)
..+.++||||..+..+ +..+++.+.....|.... +..++.+.......+. ..+ .. ..
T Consensus 180 ~~rivgLSATlpN~~e----vA~wL~a~~~~~~~rp~~---l~~~v~~~~~~~~~~~------------~~k---~~-~~ 236 (766)
T COG1204 180 LIRIVGLSATLPNAEE----VADWLNAKLVESDWRPVP---LRRGVPYVGAFLGADG------------KKK---TW-PL 236 (766)
T ss_pred ceEEEEEeeecCCHHH----HHHHhCCcccccCCCCcc---cccCCccceEEEEecC------------ccc---cc-cc
Confidence 2478999999986443 344555443322221110 0001100000000000 000 00 00
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh------------------------------------------
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------------------ 288 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L------------------------------------------ 288 (516)
.+...+..++..+- +.+..+||||+++..+...|+.+
T Consensus 237 ~~~~~~~~~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 237 LIDNLALELVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred cchHHHHHHHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 11122333332222 57889999999987666555544
Q ss_pred CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ecC----CCCCHHHHHHHhhcccccC
Q 010184 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISS----HAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 289 ~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~~----~~~s~~~~~Qr~GR~~R~g 360 (516)
++++.|.+++.++|.-+.+.|+++ .++||+||++++.|+|+|.-.+||- +++ -.-+..++.|+.||+||+|
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g-~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg 394 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKG-KIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPG 394 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcC-CceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCC
Confidence 245689999999999999999998 9999999999999999995445542 231 0125778899999999999
Q ss_pred C
Q 010184 361 G 361 (516)
Q Consensus 361 ~ 361 (516)
-
T Consensus 395 ~ 395 (766)
T COG1204 395 Y 395 (766)
T ss_pred c
Confidence 4
No 68
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=229.52 Aligned_cols=291 Identities=19% Similarity=0.181 Sum_probs=209.9
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-cC-----CCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~-----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.+.|.|++++.-.+.+. +.+.-+..|+|||-.++.+... +. -..+|++|+++|+-|..+--..........
T Consensus 107 kPSPiQeesIPiaLtGr---diLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~ 183 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGR---DILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIK 183 (459)
T ss_pred CCCCccccccceeecch---hhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeE
Confidence 57889999999777653 6666789999999988776543 32 369999999999988776555444444457
Q ss_pred EEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhh----c
Q 010184 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL----T 169 (516)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~----~ 169 (516)
+.+.+|+..- ++....+++|+||+.+....++. ...+ .+..++|+|||+.+.+..|..++.. +
T Consensus 184 vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg------Va~l--s~c~~lV~DEADKlLs~~F~~~~e~li~~l 255 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG------VADL--SDCVILVMDEADKLLSVDFQPIVEKLISFL 255 (459)
T ss_pred EEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc------cccc--hhceEEEechhhhhhchhhhhHHHHHHHhC
Confidence 7777877542 13467899999999886653322 1222 4557899999999998877665543 3
Q ss_pred -ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhh
Q 010184 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (516)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~ 248 (516)
+.++.++.|||.+-.-.. ...-.-.+-|+.++++-. +..-...|. -++.
T Consensus 256 P~~rQillySATFP~tVk~---Fm~~~l~kPy~INLM~eL-----------------tl~GvtQyY----------afV~ 305 (459)
T KOG0326|consen 256 PKERQILLYSATFPLTVKG---FMDRHLKKPYEINLMEEL-----------------TLKGVTQYY----------AFVE 305 (459)
T ss_pred CccceeeEEecccchhHHH---HHHHhccCcceeehhhhh-----------------hhcchhhhe----------eeec
Confidence 356788999997632111 000111122333333221 111111111 1233
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---C--CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
...|...+..|...+. -...|||||++..++.+|+.. + +.++|..|.+++|.+++..|++| .++.||||+.
T Consensus 306 e~qKvhCLntLfskLq---INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVctDL 381 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQ---INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCTDL 381 (459)
T ss_pred hhhhhhhHHHHHHHhc---ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeehhh
Confidence 3456667777776664 457899999999999999977 3 66899999999999999999998 9999999999
Q ss_pred CcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
..+|||++++|+||.++.+ +++..|.+|+||.||-|.
T Consensus 382 ~TRGIDiqavNvVINFDfp-k~aEtYLHRIGRsGRFGh 418 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFP-KNAETYLHRIGRSGRFGH 418 (459)
T ss_pred hhcccccceeeEEEecCCC-CCHHHHHHHccCCccCCC
Confidence 9999999999999999887 599999999999999884
No 69
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=4.3e-27 Score=243.99 Aligned_cols=353 Identities=16% Similarity=0.199 Sum_probs=241.8
Q ss_pred CCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
.++|+..|+++++.+... ..+-+-+|.++.|||||++|+.++. ..+..+..++||..|+.|-++.|.+|+.--+
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 468999999999998753 3334669999999999999987664 3478999999999999999999999987666
Q ss_pred CcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh
Q 010184 97 DQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (516)
..|...+|..+.+ ..+..+|+|.|...+.. ...-.+.++||+||-|++.-..-..+..
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-------------~V~F~~LgLVIiDEQHRFGV~QR~~L~~ 406 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-------------KVEFHNLGLVIIDEQHRFGVHQRLALRE 406 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-------------ceeecceeEEEEeccccccHHHHHHHHH
Confidence 7889999876532 25789999999977733 2333778999999999999877666665
Q ss_pred hcc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHh
Q 010184 168 LTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~ 246 (516)
.=. .++.|.|||||....-.. ..+|..- .+ .++.---.+..+...|.+..
T Consensus 407 KG~~~Ph~LvMTATPIPRTLAl----t~fgDld--vS---~IdElP~GRkpI~T~~i~~~-------------------- 457 (677)
T COG1200 407 KGEQNPHVLVMTATPIPRTLAL----TAFGDLD--VS---IIDELPPGRKPITTVVIPHE-------------------- 457 (677)
T ss_pred hCCCCCcEEEEeCCCchHHHHH----HHhcccc--ch---hhccCCCCCCceEEEEeccc--------------------
Confidence 444 478999999998643221 1122110 00 01000001122333333221
Q ss_pred hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHH--------HHHHHHh-------CCceEecCCCHHHHHHHHHHHhc
Q 010184 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFAL--------TEYAMKL-------RKPMIYGATSHVERTKILQAFKC 311 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~--------~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~ 311 (516)
.+-+++..+.+.. ..|+++.|.|+-++.. ..+++.| ++..+||+|+..|++++.++|++
T Consensus 458 ----~~~~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~ 531 (677)
T COG1200 458 ----RRPEVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE 531 (677)
T ss_pred ----cHHHHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc
Confidence 1112223333332 4689999999887643 3334444 35679999999999999999999
Q ss_pred CCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 312 ~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
+ +++|||+|.+.+.|+|+|+|++.|+.++.--...+.-|--||+||-+. +.+.+.+| .... ...
T Consensus 532 ~-e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~----------qSyC~Ll~----~~~~-~~~ 595 (677)
T COG1200 532 G-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL----------QSYCVLLY----KPPL-SEV 595 (677)
T ss_pred C-CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc----------ceEEEEEe----CCCC-Chh
Confidence 8 999999999999999999999888876654488999999999999763 33333333 2221 145
Q ss_pred HHHHHHHHHHcCCceEEEec---CCCC--------CCCCCcccCCHHHHHHHHHHHHhc
Q 010184 392 STKRQQFLIDQGYSFKVITS---LPPP--------DSGADLSYHRLDEQLALLGKVLSA 439 (516)
Q Consensus 392 ~~~r~~~l~~~g~~~~vi~~---~~~~--------~~~~~~~~~~~~e~~~lL~~~~~~ 439 (516)
+++|-+.+.+-.-.|.+-+. +.+. ...+++.+.+-.+-.++|..+-..
T Consensus 596 a~~RL~im~~t~DGF~IAE~DLklRGpGe~lG~rQSG~~~f~~Adl~~D~~ile~ar~~ 654 (677)
T COG1200 596 AKQRLKIMRETTDGFVIAEEDLKLRGPGELLGTRQSGLPEFRVADLVRDYDILEEARKD 654 (677)
T ss_pred HHHHHHHHHhcCCcceehhhhHhccCCccccCCcccCCcceEEeeHHhhHHHHHHHHHH
Confidence 66777777665555555432 1111 134456666666666777655433
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=5.8e-27 Score=238.26 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=183.2
Q ss_pred HHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCC----CCCcEEEEeC
Q 010184 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI----QDDQICRFTS 104 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~----~~~~v~~~~~ 104 (516)
||.++++.+.+++ ....++.+|||+|||.+++.++...+.++++++|+++|+.||.+.+..++.. ....+..++|
T Consensus 1 hQ~~~~~~~~~~~-~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKD-ADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCC-CCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 6999999998764 1257889999999999999888777778999999999999999999988631 2344566666
Q ss_pred Ccccc---c----------------------cCCCcEEEEchhhhhccCCCChhHHH--HHHHHccCCccEEEEccCccC
Q 010184 105 DSKER---F----------------------RGNAGVVVTTYNMVAFGGKRSEESEK--IIEEIRNREWGLLLMDEVHVV 157 (516)
Q Consensus 105 ~~~~~---~----------------------~~~~~IvV~T~~~l~~~~~r~~~~~~--~~~~l~~~~~~~vIlDEaH~~ 157 (516)
..... + ...+.|++|||+++....++...... ....+ ..++++|+||+|.+
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~--~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY--TKFSTVIFDEFHLY 157 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh--cCCCEEEEeccccc
Confidence 52110 0 12578899999999764332110000 01112 56899999999998
Q ss_pred Cchh---------HHHHHhhcc-cceEEEEeccCCCCccchhhhHhh--hCCcccc---c-----cHHHHHh----CCCc
Q 010184 158 PAHM---------FRKVISLTK-SHCKLGLTATLVREDERITDLNFL--IGPKLYE---A-----NWLDLVK----GGFI 213 (516)
Q Consensus 158 ~~~~---------~~~~l~~~~-~~~~l~LTATp~~~~~~~~~l~~~--~gp~~~~---~-----~~~~l~~----~g~l 213 (516)
.... ...++.... ..++++|||||... ....+... +|..+.. . ...++.. .++.
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~--~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA--LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH--HHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 8531 112222111 35789999999632 12223222 2211100 0 0111111 1111
Q ss_pred ---ccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCC
Q 010184 214 ---ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK 290 (516)
Q Consensus 214 ---~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~ 290 (516)
.++...... ........+ ...+..+.+......+.++||||+++..++.++..|+.
T Consensus 236 ~~~~~i~~~~~~---~~~~~~~~l------------------~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~ 294 (357)
T TIGR03158 236 PVLPPVELELIP---APDFKEEEL------------------SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQ 294 (357)
T ss_pred eeccceEEEEEe---CCchhHHHH------------------HHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhh
Confidence 112111111 111111111 01222333333223578999999999999999999942
Q ss_pred -------ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhccc
Q 010184 291 -------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357 (516)
Q Consensus 291 -------~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~ 357 (516)
..+||.+++.+|.+.. +..+||||+++++|||+|.. +|| ++ + .+...|+||+||+|
T Consensus 295 ~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p-~~~~~yiqR~GR~g 357 (357)
T TIGR03158 295 QGLGDDIGRITGFAPKKDRERAM-------QFDILLGTSTVDVGVDFKRD-WLI-FS-A-RDAAAFWQRLGRLG 357 (357)
T ss_pred hCCCceEEeeecCCCHHHHHHhc-------cCCEEEEecHHhcccCCCCc-eEE-EC-C-CCHHHHhhhcccCC
Confidence 3589999999887542 67899999999999999975 555 44 3 48999999999986
No 71
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.4e-26 Score=240.92 Aligned_cols=287 Identities=18% Similarity=0.174 Sum_probs=210.6
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~ 104 (516)
..||-|.++|+.++..+ ++++.+|||.||++++-.++.-..+.+|||.|..+|.....+.+... |+ .+..+.+
T Consensus 17 ~FR~gQ~evI~~~l~g~---d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~-Gi---~A~~lnS 89 (590)
T COG0514 17 SFRPGQQEIIDALLSGK---DTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAA-GI---RAAYLNS 89 (590)
T ss_pred ccCCCHHHHHHHHHcCC---cEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHc-Cc---eeehhhc
Confidence 68999999999999875 99999999999999999998888899999999999999999998875 33 3444444
Q ss_pred Cccc-c--------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc------hhHH---HHH
Q 010184 105 DSKE-R--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFR---KVI 166 (516)
Q Consensus 105 ~~~~-~--------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~~---~~l 166 (516)
.... . ..+..+++..+|+++.. ..+++.+...+..+++|||||++.. +.|. .+.
T Consensus 90 ~l~~~e~~~v~~~l~~g~~klLyisPErl~~--------~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~ 161 (590)
T COG0514 90 TLSREERQQVLNQLKSGQLKLLYISPERLMS--------PRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRLR 161 (590)
T ss_pred ccCHHHHHHHHHHHhcCceeEEEECchhhcC--------hHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHHH
Confidence 4211 1 23568899999999977 5677788788999999999999974 3333 344
Q ss_pred hhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHh
Q 010184 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (516)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~ 246 (516)
..++...+++||||-...- ..++...++-. ...+.......+.-.++--. .
T Consensus 162 ~~~~~~p~~AlTATA~~~v--~~DI~~~L~l~----------------~~~~~~~sfdRpNi~~~v~~-~---------- 212 (590)
T COG0514 162 AGLPNPPVLALTATATPRV--RDDIREQLGLQ----------------DANIFRGSFDRPNLALKVVE-K---------- 212 (590)
T ss_pred hhCCCCCEEEEeCCCChHH--HHHHHHHhcCC----------------CcceEEecCCCchhhhhhhh-c----------
Confidence 5555667999988875322 11232222211 10111111111111111000 0
Q ss_pred hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010184 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t 321 (516)
...+.+.. .+.+... ..+...||||.++..++.+++.| ++..+||+++.++|..+.++|..+ ++.|+|||
T Consensus 213 --~~~~~q~~-fi~~~~~-~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiVAT 287 (590)
T COG0514 213 --GEPSDQLA-FLATVLP-QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMVAT 287 (590)
T ss_pred --ccHHHHHH-HHHhhcc-ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEEe
Confidence 00111122 3332111 44666899999999999999999 356899999999999999999998 99999999
Q ss_pred CCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 322 ~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.+.|+|||-|++..||+++.| +|...|.|-+||+||.|.
T Consensus 288 ~AFGMGIdKpdVRfViH~~lP-~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 288 NAFGMGIDKPDVRFVIHYDLP-GSIESYYQETGRAGRDGL 326 (590)
T ss_pred ccccCccCCCCceEEEEecCC-CCHHHHHHHHhhccCCCC
Confidence 999999999999999999777 599999999999999885
No 72
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=9.8e-27 Score=264.98 Aligned_cols=353 Identities=19% Similarity=0.276 Sum_probs=249.3
Q ss_pred CCCCCHHHHHHHHHHHh--CCCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 23 HAQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
..+|+|||.++++|+.. .....+|+++++||+|||+++++++... .+++||+||++ ++.+|.++|.+|.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~- 413 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFA- 413 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhC-
Confidence 36799999999998662 2233589999999999999999988531 25899999987 4999999999984
Q ss_pred CCCCc-EEEEeCCcc------cccc---C-----CCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 94 IQDDQ-ICRFTSDSK------ERFR---G-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 94 ~~~~~-v~~~~~~~~------~~~~---~-----~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
+... +..+.|... +.+. . ..+++++||+.+.... .....+...+|+.+|+||+|+++
T Consensus 414 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-------~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 414 -PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-------VDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred -ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-------hhHHHHhhceeeeeehhhHHHHh
Confidence 3444 677777653 1111 1 1789999999996521 13456667899999999999998
Q ss_pred chh--HHHHHhhcccceEEEEeccCCCCc-cchhhhHh-hhCCccccccHH-----------------------------
Q 010184 159 AHM--FRKVISLTKSHCKLGLTATLVRED-ERITDLNF-LIGPKLYEANWL----------------------------- 205 (516)
Q Consensus 159 ~~~--~~~~l~~~~~~~~l~LTATp~~~~-~~~~~l~~-~~gp~~~~~~~~----------------------------- 205 (516)
+.. -.+.+..+++.+++.|||||..+. +....+.. ++.|..+.....
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 762 222344778888999999997544 22334444 545544331100
Q ss_pred -HHHh--------CC-----CcccceeEEEeccCCHHH---HHHHHH---hhhh-------H----------HHHHH---
Q 010184 206 -DLVK--------GG-----FIANVQCAEVWCPMTKEF---FSEYLK---KENS-------K----------KKQAL--- 245 (516)
Q Consensus 206 -~l~~--------~g-----~l~~~~~~~v~~~~~~~~---~~~~l~---~~~~-------~----------~~~~l--- 245 (516)
.+.. .. .+++.......|+++... |..++. .... . ....+
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 0000 00 122333344556666532 222221 0000 0 00010
Q ss_pred -----h------hhCc------------------------------chHHHHHHHH-HHHhhcCCC--eEEEEeccHHHH
Q 010184 246 -----Y------VMNP------------------------------NKFRACEFLI-RFHEQQRGD--KIIVFADNLFAL 281 (516)
Q Consensus 246 -----~------~~~~------------------------------~k~~~~~~ll-~~~~~~~~~--k~iVF~~~~~~~ 281 (516)
. .... +|...+..++ .... ..++ ++++|++++..+
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~l 724 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL-EEGHYHKVLIFSQFTPVL 724 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH-hhcccccEEEEeCcHHHH
Confidence 0 0011 6777787888 4544 5677 999999999999
Q ss_pred HHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEE-EEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhc
Q 010184 282 TEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI-FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355 (516)
Q Consensus 282 ~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vL-v~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR 355 (516)
+.+...+. ...++|+++.+.|..++++|++++...++ +++++|+.|+|+..+++||++++|| |+..+.|+.+|
T Consensus 725 ~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w-np~~~~Qa~dR 803 (866)
T COG0553 725 DLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW-NPAVELQAIDR 803 (866)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc-ChHHHHHHHHH
Confidence 99988883 45699999999999999999997455554 5579999999999999999999887 99999999999
Q ss_pred ccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHH
Q 010184 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (516)
Q Consensus 356 ~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~ 398 (516)
+||+| |...+.+|.+++++|+|+.+......+
T Consensus 804 a~Rig-----------Q~~~v~v~r~i~~~tiEe~i~~~~~~K 835 (866)
T COG0553 804 AHRIG-----------QKRPVKVYRLITRGTIEEKILELQEKK 835 (866)
T ss_pred HHHhc-----------CcceeEEEEeecCCcHHHHHHHHHHHH
Confidence 99999 888999999999999999887665554
No 73
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=4.8e-27 Score=267.57 Aligned_cols=289 Identities=18% Similarity=0.194 Sum_probs=184.3
Q ss_pred EEecCCCcHHHHHHHHH-Hhc---------------CCCEEEEEeChhhHHHHHHHHHHhh----------C--CCCCcE
Q 010184 48 IVLPCGAGKSLVGVSAA-CRI---------------KKSCLCLATNAVSVDQWAFQFKLWS----------T--IQDDQI 99 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i-~~~---------------~~~~Lvl~P~~~L~~Qw~~e~~~~~----------~--~~~~~v 99 (516)
|++|||||||+++..++ .++ +.++|||+|+++|+.|..+.++..+ + ..+..|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 47899999999998754 221 2469999999999999998886411 1 134578
Q ss_pred EEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh--------HHHHH
Q 010184 100 CRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--------FRKVI 166 (516)
Q Consensus 100 ~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~--------~~~~l 166 (516)
.+.+|+.... ....++|+||||+++.....+ +....+ ...++|||||+|.+.... ..++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-----k~r~~L--~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~ 153 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-----RARETL--RGVETVIIDEVHAVAGSKRGAHLALSLERLD 153 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-----hhhhhh--ccCCEEEEecHHHhcccccccHHHHHHHHHH
Confidence 8888875422 235689999999999764322 112233 667899999999998542 23333
Q ss_pred hhcc-cceEEEEeccCCCCccchhhhHhhhCCc-cccccHHHHHhCCCcccceeEEEeccCCHH-HHHHHHHh-hhhHHH
Q 010184 167 SLTK-SHCKLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKK-ENSKKK 242 (516)
Q Consensus 167 ~~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~-~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~-~~~~~l~~-~~~~~~ 242 (516)
..+. ..++|+||||..... .+..+++.. ... ++......+.... +.++.... ........ ......
T Consensus 154 ~l~~~~~QrIgLSATI~n~e----evA~~L~g~~pv~-----Iv~~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~ 223 (1490)
T PRK09751 154 ALLHTSAQRIGLSATVRSAS----DVAAFLGGDRPVT-----VVNPPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHA 223 (1490)
T ss_pred HhCCCCCeEEEEEeeCCCHH----HHHHHhcCCCCEE-----EECCCCCcccceE-EEEecCchhhccccccccccccch
Confidence 3332 357999999996432 233333311 000 0001111111111 11221110 00000000 000000
Q ss_pred HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC---------------------------------
Q 010184 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------- 289 (516)
Q Consensus 243 ~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~--------------------------------- 289 (516)
... +.-.-.+...++... ..+.++|||||++..++.++..|+
T Consensus 224 ~r~---~~i~~~v~~~il~~i--~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 224 GRE---GSIWPYIETGILDEV--LRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred hhh---hhhhHHHHHHHHHHH--hcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 000 000001112333333 246789999999999999988773
Q ss_pred -----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 290 -----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 290 -----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
+..+||++++++|..+++.|+++ .+++||||++++.|||++++++||++++|. |...|+||+||+||..
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G-~LrvLVATssLELGIDIg~VDlVIq~gsP~-sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSG-ELRCVVATSSLELGIDMGAVDLVIQVATPL-SVASGLQRIGRAGHQV 372 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhC-CceEEEeCcHHHccCCcccCCEEEEeCCCC-CHHHHHHHhCCCCCCC
Confidence 13578999999999999999998 999999999999999999999999998875 9999999999999974
No 74
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.95 E-value=1.9e-26 Score=231.33 Aligned_cols=349 Identities=21% Similarity=0.224 Sum_probs=230.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH----HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
..+|.|.|.-|+..-+-.| .+.+++.+|++|||+++-.+- ..-+++.|++||..+|++|-+++|+..-.--...
T Consensus 214 ~~eLlPVQ~laVe~GLLeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglk 291 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLK 291 (830)
T ss_pred cceecchhhhhhhhccccC--CceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccce
Confidence 3579999999999866655 489999999999999986542 3336899999999999999999998642222223
Q ss_pred EEEEeCCc---------cccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--------h
Q 010184 99 ICRFTSDS---------KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------M 161 (516)
Q Consensus 99 v~~~~~~~---------~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--------~ 161 (516)
+.+-.|.. ......+++|+|.||+-+-...+-. .. -.+.|.||+||+|.+... .
T Consensus 292 vairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-------~~--lgdiGtVVIDEiHtL~deERG~RLdGL 362 (830)
T COG1202 292 VAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-------KD--LGDIGTVVIDEIHTLEDEERGPRLDGL 362 (830)
T ss_pred EEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-------Cc--ccccceEEeeeeeeccchhcccchhhH
Confidence 33222211 1112356899999998775432211 11 267899999999999863 3
Q ss_pred HHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 162 FRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
..++-..++..+.|+||||..+..+ +...+|.++..++ ..++|+ .
T Consensus 363 I~RLr~l~~~AQ~i~LSATVgNp~e----lA~~l~a~lV~y~----------------~RPVpl---------------E 407 (830)
T COG1202 363 IGRLRYLFPGAQFIYLSATVGNPEE----LAKKLGAKLVLYD----------------ERPVPL---------------E 407 (830)
T ss_pred HHHHHHhCCCCeEEEEEeecCChHH----HHHHhCCeeEeec----------------CCCCCh---------------h
Confidence 3344445566889999999875444 3334444332211 111111 1
Q ss_pred HHHHhhh-CcchHHHHHHHHHHH---hhcC--CCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHh
Q 010184 242 KQALYVM-NPNKFRACEFLIRFH---EQQR--GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFK 310 (516)
Q Consensus 242 ~~~l~~~-~~~k~~~~~~ll~~~---~~~~--~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~ 310 (516)
+.++.+. ...|+.++..|.+.. +.+. ...+|||++++..+..++..|. +..+|++++..+|..+...|.
T Consensus 408 rHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 408 RHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred HeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 1122222 234555666665321 0011 2478999999999999999994 567999999999999999999
Q ss_pred cCCCccEEEEeCCCcccccccccCEEEE----ecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 311 ~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
+. .+.++|+|.+++.|+|+| |+.||+ +...|-|++.|.|++||+||++- .....||-++..+.
T Consensus 488 ~q-~l~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~y-----------HdrGkVyllvepg~ 554 (830)
T COG1202 488 AQ-ELAAVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPDY-----------HDRGKVYLLVEPGK 554 (830)
T ss_pred cC-CcceEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCCc-----------ccCceEEEEecCCh
Confidence 98 999999999999999999 555553 12334599999999999999984 34567788876543
Q ss_pred hhhhHHHHHHHHHHHcCCceEEEecCCCCCCCCCcccCCHHHHHHHHHHHHh
Q 010184 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLS 438 (516)
Q Consensus 387 ~e~~~~~~r~~~l~~~g~~~~vi~~~~~~~~~~~~~~~~~~e~~~lL~~~~~ 438 (516)
.|+.+.. -.+...+++.++.-+ +.-.+.|+..++..+.|..+-.
T Consensus 555 ---~Y~~~m~--~TEdevA~kLL~s~~---e~V~vey~ee~e~e~vLA~~~v 598 (830)
T COG1202 555 ---KYHASME--ETEDEVAFKLLESEP---EPVIVEYDEEDEEENVLASAGV 598 (830)
T ss_pred ---hhccccc--ccHHHHHHHHhcCCC---CcceeccCcHHHHHHHHHHhhh
Confidence 1111000 001112344444221 2335678888887788875433
No 75
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=1.1e-25 Score=245.39 Aligned_cols=332 Identities=20% Similarity=0.206 Sum_probs=238.8
Q ss_pred cccCCCCCCCCHHHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHH
Q 010184 17 NMELKPHAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 17 ~~~l~~~~~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
.++-.+.++-+|-|..||+.+.. .+++-+-+||+..|.|||-+|+-++- .-++.|.|+|||..|+.|.++.|+.
T Consensus 586 ~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFke 665 (1139)
T COG1197 586 EFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKE 665 (1139)
T ss_pred HHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHH
Confidence 46677788999999999998865 34455779999999999999987663 3468999999999999999999997
Q ss_pred hhCCCCCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh
Q 010184 91 WSTIQDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM 161 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~ 161 (516)
.|.--+.+|..++.=...+ -.|..+|+|.|...|....+ -.+.|++||||-|+++-..
T Consensus 666 RF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~-------------FkdLGLlIIDEEqRFGVk~ 732 (1139)
T COG1197 666 RFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK-------------FKDLGLLIIDEEQRFGVKH 732 (1139)
T ss_pred HhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE-------------EecCCeEEEechhhcCccH
Confidence 6655556776655422111 24789999999988865421 2677999999999998764
Q ss_pred HHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 162 FRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
-.++-..-..-.+|-|||||....-.. .+.|-.-+ .++..--..+..+.....+.++...+
T Consensus 733 KEkLK~Lr~~VDvLTLSATPIPRTL~M----sm~GiRdl-----SvI~TPP~~R~pV~T~V~~~d~~~ir---------- 793 (1139)
T COG1197 733 KEKLKELRANVDVLTLSATPIPRTLNM----SLSGIRDL-----SVIATPPEDRLPVKTFVSEYDDLLIR---------- 793 (1139)
T ss_pred HHHHHHHhccCcEEEeeCCCCcchHHH----HHhcchhh-----hhccCCCCCCcceEEEEecCChHHHH----------
Confidence 443333323456899999998654331 12221100 01100000011111111222222222
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-------CCceEecCCCHHHHHHHHHHHhcCCC
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
+.+++.+ .+|..+....|.++.++.++..| ++.+.||.|+..+-++++..|.++ .
T Consensus 794 ---------------eAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g-~ 855 (1139)
T COG1197 794 ---------------EAILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG-E 855 (1139)
T ss_pred ---------------HHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC-C
Confidence 2233334 57889999999999999999988 467899999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHH
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (516)
++|||||.+.++|||+|+||++|+-..+.-...+..|--||+||-+ +.+|.|-++..+..--..+.+
T Consensus 856 ~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~-------------~~AYAYfl~p~~k~lT~~A~k 922 (1139)
T COG1197 856 YDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSN-------------KQAYAYFLYPPQKALTEDAEK 922 (1139)
T ss_pred CCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCcc-------------ceEEEEEeecCccccCHHHHH
Confidence 9999999999999999999999987555458999999999999966 367888888776666677888
Q ss_pred HHHHHH---HcCCceEEEec
Q 010184 395 RQQFLI---DQGYSFKVITS 411 (516)
Q Consensus 395 r~~~l~---~~g~~~~vi~~ 411 (516)
|-..+. +.|-.|++...
T Consensus 923 RL~aI~~~~~LGaGf~lA~~ 942 (1139)
T COG1197 923 RLEAIASFTELGAGFKLAMH 942 (1139)
T ss_pred HHHHHHhhhhcCchHHHHhc
Confidence 877765 45666665543
No 76
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.95 E-value=1.1e-27 Score=229.80 Aligned_cols=307 Identities=17% Similarity=0.218 Sum_probs=213.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH----Hh--c-------CCC-EEEEEeChhhHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CR--I-------KKS-CLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~--~-------~~~-~Lvl~P~~~L~~Qw~~e~~ 89 (516)
.++.|.|.+++.-++.+. +.|-.+-||||||+++..++ .. . .+| -|||||+++|+.|..+-+.
T Consensus 191 ~~PTpIQvQGlPvvLsGR---DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie 267 (610)
T KOG0341|consen 191 VHPTPIQVQGLPVVLSGR---DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIE 267 (610)
T ss_pred CCCCceeecCcceEeecC---ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHH
Confidence 578999999999888763 88999999999998865533 11 1 133 7999999999999987777
Q ss_pred Hhh------CCCCCcEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 90 LWS------TIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 90 ~~~------~~~~~~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
.|+ +.|..+.....|+.. +......+|+|+||+.|...+.. +. +.-.-..++.+|||+++.
T Consensus 268 ~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-----K~---~sLd~CRyL~lDEADRmi 339 (610)
T KOG0341|consen 268 QYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-----KI---MSLDACRYLTLDEADRMI 339 (610)
T ss_pred HHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-----hh---ccHHHHHHhhhhhHHHHh
Confidence 664 444444444445432 22346789999999988654321 11 111334689999999998
Q ss_pred chhH----HHHHhhccc-ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHH
Q 010184 159 AHMF----RKVISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY 233 (516)
Q Consensus 159 ~~~~----~~~l~~~~~-~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~ 233 (516)
+..| +.++..+++ ++.|++|||.++.-... .-..+..|...+....... .+.--+--+|
T Consensus 340 DmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~F-AkSALVKPvtvNVGRAGAA---------------sldViQevEy 403 (610)
T KOG0341|consen 340 DMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNF-AKSALVKPVTVNVGRAGAA---------------SLDVIQEVEY 403 (610)
T ss_pred hccchhhHHHHHHHHhhhhheeeeeccccHHHHHH-HHhhcccceEEeccccccc---------------chhHHHHHHH
Confidence 7655 455556654 46799999987432211 1112233333221111100 1111122233
Q ss_pred HHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHH
Q 010184 234 LKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQA 308 (516)
Q Consensus 234 l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~ 308 (516)
. ...+| +-+|++.+. +...++||||.....++.+.++| .+..|||+-.+++|...++.
T Consensus 404 V-------------kqEaK---iVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~a 466 (610)
T KOG0341|consen 404 V-------------KQEAK---IVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEA 466 (610)
T ss_pred H-------------Hhhhh---hhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHHH
Confidence 3 22223 334555555 66779999999999999999988 35679999999999999999
Q ss_pred HhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchh
Q 010184 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (516)
Q Consensus 309 F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (516)
|+.+ +-+|||+|++++.|+|+|++.+||+|+-| .....|+||+||+||.|. ....-+++.+.+.+
T Consensus 467 fr~g-kKDVLVATDVASKGLDFp~iqHVINyDMP-~eIENYVHRIGRTGRsg~-------------~GiATTfINK~~~e 531 (610)
T KOG0341|consen 467 FRAG-KKDVLVATDVASKGLDFPDIQHVINYDMP-EEIENYVHRIGRTGRSGK-------------TGIATTFINKNQEE 531 (610)
T ss_pred HhcC-CCceEEEecchhccCCCccchhhccCCCh-HHHHHHHHHhcccCCCCC-------------cceeeeeecccchH
Confidence 9998 99999999999999999999999999776 489999999999999873 34445566666654
Q ss_pred h
Q 010184 389 M 389 (516)
Q Consensus 389 ~ 389 (516)
.
T Consensus 532 s 532 (610)
T KOG0341|consen 532 S 532 (610)
T ss_pred H
Confidence 4
No 77
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.5e-26 Score=227.26 Aligned_cols=307 Identities=19% Similarity=0.235 Sum_probs=214.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH-h------cC---CC-EEEEEeChhhHHHHHHHHHHhh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R------IK---KS-CLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~------~~---~~-~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+++|.|-.++...+.. +..+-.+-||+|||-+.+..+. + +. +| .||+|||++|+.|.+.+-++|.
T Consensus 244 ~kptpiq~qalptalsg---rdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSG---RDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred ccCCccccccccccccc---ccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 36777788887766654 3888889999999998887552 1 11 34 6788999999999999999986
Q ss_pred CCCCC-cEEEEeCCccc----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH---
Q 010184 93 TIQDD-QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK--- 164 (516)
Q Consensus 93 ~~~~~-~v~~~~~~~~~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~--- 164 (516)
..-.. .|+++.|+.+. .+..++.|||+||+.|....+ +....-.+..++||||++++....|..
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk--------mKatn~~rvS~LV~DEadrmfdmGfe~qVr 392 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK--------MKATNLSRVSYLVLDEADRMFDMGFEPQVR 392 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH--------hhcccceeeeEEEEechhhhhccccHHHHH
Confidence 54444 45666666542 245679999999998866432 233334677899999999998865544
Q ss_pred -HHhhcc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHH
Q 010184 165 -VISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (516)
Q Consensus 165 -~l~~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 242 (516)
+...+. .++.|++|||....-.+ +.+.-..-+++.....+.+..+-.. +
T Consensus 393 SI~~hirpdrQtllFsaTf~~kIe~-------------------lard~L~dpVrvVqg~vgean~dIT----------Q 443 (731)
T KOG0339|consen 393 SIKQHIRPDRQTLLFSATFKKKIEK-------------------LARDILSDPVRVVQGEVGEANEDIT----------Q 443 (731)
T ss_pred HHHhhcCCcceEEEeeccchHHHHH-------------------HHHHHhcCCeeEEEeehhccccchh----------h
Confidence 444443 45789999998632222 1111112222322222222111111 1
Q ss_pred HHHhhhC-cchHHH-HHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCc
Q 010184 243 QALYVMN-PNKFRA-CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDL 315 (516)
Q Consensus 243 ~~l~~~~-~~k~~~-~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~ 315 (516)
.+..+.+ ..|+.. +..|..+. .-.++|+|+.....++.++..| ++..+||++.+.+|.+++..|+.. ..
T Consensus 444 ~V~V~~s~~~Kl~wl~~~L~~f~---S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~~ 519 (731)
T KOG0339|consen 444 TVSVCPSEEKKLNWLLRHLVEFS---SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-RK 519 (731)
T ss_pred eeeeccCcHHHHHHHHHHhhhhc---cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-CC
Confidence 1111111 223332 23333333 2459999999999999999998 467899999999999999999997 89
Q ss_pred cEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchh
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (516)
.||++|+++.+|+|+|...+||.++.. .+...+.||+||++|.|. ....|+||+....+
T Consensus 520 ~VlvatDvaargldI~~ikTVvnyD~a-rdIdththrigrtgRag~-------------kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 520 PVLVATDVAARGLDIPSIKTVVNYDFA-RDIDTHTHRIGRTGRAGE-------------KGVAYTLVTEKDAE 578 (731)
T ss_pred ceEEEeeHhhcCCCccccceeeccccc-chhHHHHHHhhhcccccc-------------cceeeEEechhhHH
Confidence 999999999999999999999999765 599999999999999983 36779999876555
No 78
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=3e-25 Score=245.06 Aligned_cols=332 Identities=17% Similarity=0.190 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCC--C
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD--D 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~--~ 97 (516)
.|+.||.+|++.+.++ ++.+++.+||||||.+++.++... ..++|+|.|+++|+....+.|.+|....+ .
T Consensus 70 ~lY~HQ~~A~~~~~~G---~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v 146 (851)
T COG1205 70 RLYSHQVDALRLIREG---RNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKV 146 (851)
T ss_pred cccHHHHHHHHHHHCC---CCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcc
Confidence 4999999999987766 499999999999999999887332 35789999999999999999999875444 5
Q ss_pred cEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-------hHHHH
Q 010184 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFRKV 165 (516)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------~~~~~ 165 (516)
.+..|+|+.+.. ..+.++|++|||+|+....-|.++.... + ...+.+||+||+|.+..- .++++
T Consensus 147 ~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~---~-~~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 147 TFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLW---L-LRNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred eeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHH---H-HhcCcEEEEecceeccccchhHHHHHHHHH
Confidence 778899986532 3578999999999999866655443322 2 244899999999999742 55666
Q ss_pred Hhhcc----cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 166 ISLTK----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 166 l~~~~----~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
+..+. ....|+.|||.....+....+ +|-. ++.. ..+.|.-........+.|-.......
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~np~e~~~~l---~~~~-f~~~---v~~~g~~~~~~~~~~~~p~~~~~~~~--------- 286 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLANPGEFAEEL---FGRD-FEVP---VDEDGSPRGLRYFVRREPPIRELAES--------- 286 (851)
T ss_pred HHHHhccCCCceEEEEeccccChHHHHHHh---cCCc-ceee---ccCCCCCCCceEEEEeCCcchhhhhh---------
Confidence 65554 457899999997654432222 2211 1111 22233444444444444422211110
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHH----h---C------CceEecCCCHHHHHHHHHH
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK----L---R------KPMIYGATSHVERTKILQA 308 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~----L---~------~~~i~g~~~~~eR~~~l~~ 308 (516)
....+......++.... ..+-++|+|+.+...++.++.. + + +...+|+++..+|.++...
T Consensus 287 ------~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 287 ------IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred ------cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHH
Confidence 11123344555554444 6789999999999999888622 2 2 4568899999999999999
Q ss_pred HhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchh
Q 010184 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (516)
Q Consensus 309 F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (516)
|+++ ++.++++|+++..|+|+-.++.||....|..+...+.|+.||+||.++ ...++.+...+..+
T Consensus 360 ~~~g-~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~-------------~~l~~~v~~~~~~d 425 (851)
T COG1205 360 FKEG-ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ-------------ESLVLVVLRSDPLD 425 (851)
T ss_pred HhcC-CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC-------------CceEEEEeCCCccc
Confidence 9998 999999999999999999999999886664488999999999999883 34444555578888
Q ss_pred hhHHHHHHHHHH
Q 010184 389 MFYSTKRQQFLI 400 (516)
Q Consensus 389 ~~~~~~r~~~l~ 400 (516)
.+|......++.
T Consensus 426 ~yy~~~p~~~~~ 437 (851)
T COG1205 426 SYYLRHPEELLE 437 (851)
T ss_pred hhhhhCcHhhhh
Confidence 888777666664
No 79
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.94 E-value=9.6e-25 Score=234.91 Aligned_cols=305 Identities=17% Similarity=0.184 Sum_probs=189.7
Q ss_pred CCCCHH----HHHHHHHHHhCCCCcccEEEecCCCcHHHHH-------------HHHHHh-----cCCCEEEEEeChhhH
Q 010184 24 AQPRPY----QEKSLSKMFGNGRARSGIIVLPCGAGKSLVG-------------VSAACR-----IKKSCLCLATNAVSV 81 (516)
Q Consensus 24 ~~Lr~y----Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~-------------i~~i~~-----~~~~~Lvl~P~~~L~ 81 (516)
.+|++. |.+.++.+..+. +.++.++||+|||.+. +..+.. ..++++|++|+++|+
T Consensus 159 ~~l~~~~~~iQ~qil~~i~~gk---dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa 235 (675)
T PHA02653 159 IPLASLQPDVQLKIFEAWISRK---PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALV 235 (675)
T ss_pred ccCCchhHHHHHHHHHHHHhCC---CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHH
Confidence 345544 667777766654 8999999999999872 111111 135899999999999
Q ss_pred HHHHHHHHHhhCC---CCCcEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccC
Q 010184 82 DQWAFQFKLWSTI---QDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (516)
Q Consensus 82 ~Qw~~e~~~~~~~---~~~~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (516)
.|...++.+..+. ....+.+..|+..+. .....+|+|+|..... ..+ ..+++||+|||
T Consensus 236 ~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-------------~~L--~~v~~VVIDEa 300 (675)
T PHA02653 236 RLHSITLLKSLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL-------------NKL--FDYGTVIIDEV 300 (675)
T ss_pred HHHHHHHHHHhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc-------------ccc--ccCCEEEcccc
Confidence 9999998875543 334455556554321 1124689999965321 112 56889999999
Q ss_pred ccCCch--hHHHHHhhc-c-cceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHH
Q 010184 155 HVVPAH--MFRKVISLT-K-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF 229 (516)
Q Consensus 155 H~~~~~--~~~~~l~~~-~-~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~ 229 (516)
|..... ....++..+ . .++.++||||+...-.. +..+++ |...... .....+++...+.....+..
T Consensus 301 HEr~~~~DllL~llk~~~~~~rq~ILmSATl~~dv~~---l~~~~~~p~~I~I~------grt~~pV~~~yi~~~~~~~~ 371 (675)
T PHA02653 301 HEHDQIGDIIIAVARKHIDKIRSLFLMTATLEDDRDR---IKEFFPNPAFVHIP------GGTLFPISEVYVKNKYNPKN 371 (675)
T ss_pred ccCccchhHHHHHHHHhhhhcCEEEEEccCCcHhHHH---HHHHhcCCcEEEeC------CCcCCCeEEEEeecCccccc
Confidence 998754 222233222 1 24689999999643222 334443 3332221 11122332222211111111
Q ss_pred HHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------CceEecCCCHHHH
Q 010184 230 FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVER 302 (516)
Q Consensus 230 ~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR 302 (516)
...|. . ..+...+..+..... ..+.++|||++++..++.+++.|. +..+||++++.
T Consensus 372 ~~~y~-~-------------~~k~~~l~~L~~~~~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~-- 434 (675)
T PHA02653 372 KRAYI-E-------------EEKKNIVTALKKYTP-PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI-- 434 (675)
T ss_pred chhhh-H-------------HHHHHHHHHHHHhhc-ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--
Confidence 11111 0 011122222222221 235689999999999999998883 33589999974
Q ss_pred HHHHHHH-hcCCCccEEEEeCCCcccccccccCEEEEec---CC--------CCCHHHHHHHhhcccccCCCccccccCC
Q 010184 303 TKILQAF-KCSRDLNTIFLSKVGDNSIDIPEANVIIQIS---SH--------AGSRRQEAQRLGRILRAKGKLEDRMAGG 370 (516)
Q Consensus 303 ~~~l~~F-~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~---~~--------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~ 370 (516)
++.+++| +++ +.+|||+|+++++|||+|++++||.++ .+ |-|...+.||.||+||..+
T Consensus 435 eq~l~~ff~~g-k~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~~--------- 504 (675)
T PHA02653 435 DEILEKVYSSK-NPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVSP--------- 504 (675)
T ss_pred HHHHHHHhccC-ceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCCC---------
Confidence 4667787 565 899999999999999999999999774 11 1288899999999999863
Q ss_pred CCceeEEEEEEEcCCch
Q 010184 371 KEEYNAFFYSLVSTDTQ 387 (516)
Q Consensus 371 ~~~~~~~~y~lv~~~t~ 387 (516)
...|+|.+++..
T Consensus 505 -----G~c~rLyt~~~~ 516 (675)
T PHA02653 505 -----GTYVYFYDLDLL 516 (675)
T ss_pred -----CeEEEEECHHHh
Confidence 345666665554
No 80
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=2.8e-26 Score=232.41 Aligned_cols=299 Identities=17% Similarity=0.186 Sum_probs=218.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhh-CCCCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWS-TIQDD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~-~~~~~ 97 (516)
.+.+.|..||..++.+- +.|+.+-.|+|||+++..++... .-..+||+||++++-|..+.|.+.. .+.+.
T Consensus 47 ~ptkiQaaAIP~~~~km---DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~ 123 (980)
T KOG4284|consen 47 LPTKIQAAAIPAIFSKM---DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGA 123 (980)
T ss_pred CCCchhhhhhhhhhccc---ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCc
Confidence 57789999999888764 78999999999999887655322 2469999999999999999998764 24566
Q ss_pred cEEEEeCCccccc----cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-hhHHHH----Hhh
Q 010184 98 QICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKV----ISL 168 (516)
Q Consensus 98 ~v~~~~~~~~~~~----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~~~----l~~ 168 (516)
++.+|.|+..-.. -..++|+|.||+.+..... +..+...+.+++|+|||+.+.. ..|+.- +..
T Consensus 124 ~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~e--------l~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s 195 (980)
T KOG4284|consen 124 RCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVE--------LGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS 195 (980)
T ss_pred ceEEEecCchhhhhhhhhhhceEEecCchHHHHHHH--------hcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh
Confidence 8899999865332 2568899999999976432 3445557789999999999886 455543 444
Q ss_pred cc-cceEEEEeccCCCCccchhhhHh-hhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHh
Q 010184 169 TK-SHCKLGLTATLVREDERITDLNF-LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~~~~~~~~l~~-~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~ 246 (516)
++ .++++++|||-.++-+. .|.. +-.|.+.+.+-.+.. .+.-.++....|.-. .-.+++.
T Consensus 196 lP~~rQv~a~SATYp~nLdn--~Lsk~mrdp~lVr~n~~d~~---L~GikQyv~~~~s~n-nsveemr------------ 257 (980)
T KOG4284|consen 196 LPQIRQVAAFSATYPRNLDN--LLSKFMRDPALVRFNADDVQ---LFGIKQYVVAKCSPN-NSVEEMR------------ 257 (980)
T ss_pred cchhheeeEEeccCchhHHH--HHHHHhcccceeecccCCce---eechhheeeeccCCc-chHHHHH------------
Confidence 43 46789999998765443 2222 223444333322221 111112222222111 1111111
Q ss_pred hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010184 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t 321 (516)
-|++.+..++... +-...||||+....++.++..|. +.+|.|.|++.+|..+++.+++- .++|||+|
T Consensus 258 ----lklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rILVsT 329 (980)
T KOG4284|consen 258 ----LKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRILVST 329 (980)
T ss_pred ----HHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEEEec
Confidence 1335555555443 36679999999999999999993 67899999999999999999997 99999999
Q ss_pred CCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 322 ~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+..++|||-|.+|.||.++++. +-..|.||+||+||-|.
T Consensus 330 DLtaRGIDa~~vNLVVNiD~p~-d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 330 DLTARGIDADNVNLVVNIDAPA-DEETYFHRIGRAGRFGA 368 (980)
T ss_pred chhhccCCccccceEEecCCCc-chHHHHHHhhhcccccc
Confidence 9999999999999999998875 99999999999999994
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=2.8e-25 Score=252.37 Aligned_cols=282 Identities=17% Similarity=0.194 Sum_probs=189.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.++|+|+|..++..++.+. ++++++|||+|||..++.++.. .+.++|||+||++|+.|+.+.|+++.......+
T Consensus 78 G~~pt~iQ~~~i~~il~g~---dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGE---SFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCC---cEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 4689999999999988764 9999999999999766554322 257899999999999999999999876555555
Q ss_pred EEEeCCcc------cc----c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc---------
Q 010184 100 CRFTSDSK------ER----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (516)
Q Consensus 100 ~~~~~~~~------~~----~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--------- 159 (516)
....++.. +. + .+.++|+|+|++.+.. +++.+...+++++|+||||++..
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~----------~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSK----------NFDELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHH----------HHHhccccccCEEEEEChHHhhhcccchhhHH
Confidence 55544321 11 1 2568999999998854 23445556799999999999873
Q ss_pred -------hhHHHHHhhcc-------------------------cceEEEEeccCCCCccchhhhHhhhCCccccccHHHH
Q 010184 160 -------HMFRKVISLTK-------------------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDL 207 (516)
Q Consensus 160 -------~~~~~~l~~~~-------------------------~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l 207 (516)
.....++..++ ..+.+++|||..........+..+++ ++....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~---~~v~~~-- 299 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG---FEVGSP-- 299 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce---EEecCc--
Confidence 12233343332 34678899998643221111111111 110000
Q ss_pred HhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHH---HHHH
Q 010184 208 VKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LTEY 284 (516)
Q Consensus 208 ~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~---~~~l 284 (516)
...+.++....+.+ +.|...+..++... +..+||||++... ++.+
T Consensus 300 --~~~~rnI~~~yi~~--------------------------~~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 300 --VFYLRNIVDSYIVD--------------------------EDSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred --ccccCCceEEEEEc--------------------------ccHHHHHHHHHHhc----CCCEEEEEecccChHHHHHH
Confidence 00111111111111 12334444555433 4579999998666 9999
Q ss_pred HHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEE----eCCCcccccccc-cCEEEEecCCC-----CCHHHH
Q 010184 285 AMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA-----GSRRQE 349 (516)
Q Consensus 285 ~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~----t~~~~~GlDlp~-a~~vI~~~~~~-----~s~~~~ 349 (516)
++.| ++..+||++ .+.+++|++| +++|||+ |+++++|||+|+ +..||+++-|. .....+
T Consensus 348 ~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~ 421 (1176)
T PRK09401 348 AEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAP 421 (1176)
T ss_pred HHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccC
Confidence 9888 245799999 2345999998 9999999 689999999999 89999986552 134567
Q ss_pred HHHhhcccccC
Q 010184 350 AQRLGRILRAK 360 (516)
Q Consensus 350 ~Qr~GR~~R~g 360 (516)
.+|+||+.+.-
T Consensus 422 ~~~~~r~~~~~ 432 (1176)
T PRK09401 422 PFLLLRLLSLL 432 (1176)
T ss_pred HHHHHHHHhhc
Confidence 89999997655
No 82
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=8.5e-26 Score=228.59 Aligned_cols=304 Identities=16% Similarity=0.205 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c----------CCCEEEEEeChhhHHHHHHHHHHhh-
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------KKSCLCLATNAVSVDQWAFQFKLWS- 92 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~- 92 (516)
.+.|.|..|+..++... +++.++|||+|||+.+..++.. + +-+++|+.|+++|+.|.++++.++.
T Consensus 158 ~Pt~iq~~aipvfl~~r---~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~ 234 (593)
T KOG0344|consen 158 EPTPIQKQAIPVFLEKR---DVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSI 234 (593)
T ss_pred CCCcccchhhhhhhccc---ceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCC
Confidence 68999999999887764 8999999999999999887621 1 2479999999999999999999986
Q ss_pred -CCCCCcEEEEeCCcc--cc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHH
Q 010184 93 -TIQDDQICRFTSDSK--ER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRK 164 (516)
Q Consensus 93 -~~~~~~v~~~~~~~~--~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~ 164 (516)
......+..++.... .+ ....++|+|+||..+.....-.. ....+ .....+|+||++++..+ .|..
T Consensus 235 ~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~----~~idl--~~V~~lV~dEaD~lfe~~~f~~ 308 (593)
T KOG0344|consen 235 DEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK----LNIDL--SKVEWLVVDEADLLFEPEFFVE 308 (593)
T ss_pred CCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC----ccchh--heeeeEeechHHhhhChhhHHH
Confidence 333333333333211 00 11347899999988766433210 00112 45568999999999988 5543
Q ss_pred ----HHhhcccc--eEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhh
Q 010184 165 ----VISLTKSH--CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (516)
Q Consensus 165 ----~l~~~~~~--~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~ 238 (516)
++..+.++ ++=++|||...+-+. |..++..+.+ .+.+...+... ..
T Consensus 309 Qla~I~sac~s~~i~~a~FSat~~~~VEE----------------~~~~i~~~~~------~vivg~~~sa~------~~ 360 (593)
T KOG0344|consen 309 QLADIYSACQSPDIRVALFSATISVYVEE----------------WAELIKSDLK------RVIVGLRNSAN------ET 360 (593)
T ss_pred HHHHHHHHhcCcchhhhhhhccccHHHHH----------------HHHHhhccce------eEEEecchhHh------hh
Confidence 33333333 344567877533332 3333322211 11111111110 01
Q ss_pred hHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC------CceEecCCCHHHHHHHHHHHhcC
Q 010184 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCS 312 (516)
Q Consensus 239 ~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~~l~~F~~~ 312 (516)
.....++......|+-+|..++...- ...++||+++.+.+..|...|. +.+|||..++.+|.+.+++|+.+
T Consensus 361 V~QelvF~gse~~K~lA~rq~v~~g~---~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 361 VDQELVFCGSEKGKLLALRQLVASGF---KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred hhhhheeeecchhHHHHHHHHHhccC---CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhcc
Confidence 11222334445568888888886654 4579999999999999999984 78999999999999999999998
Q ss_pred CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEE
Q 010184 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380 (516)
Q Consensus 313 ~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~ 380 (516)
++.+|+||+++++|+|+.++++||.+|.+. +-..|++|+||+||+|+ .++...||.
T Consensus 438 -~IwvLicTdll~RGiDf~gvn~VInyD~p~-s~~syihrIGRtgRag~----------~g~Aitfyt 493 (593)
T KOG0344|consen 438 -KIWVLICTDLLARGIDFKGVNLVINYDFPQ-SDLSYIHRIGRTGRAGR----------SGKAITFYT 493 (593)
T ss_pred -CeeEEEehhhhhccccccCcceEEecCCCc-hhHHHHHHhhccCCCCC----------CcceEEEec
Confidence 999999999999999999999999998885 99999999999999996 555566553
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=1.2e-24 Score=233.46 Aligned_cols=322 Identities=17% Similarity=0.181 Sum_probs=189.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
..+||||.+++..+.-.. +.|+.++||+|||+++..++.. .++.++||+|+..|+.||.+.+..+...-+..+.
T Consensus 67 lglrpydVQlig~l~l~~---G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQ---GNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred cCCCccHHHHHHHHHhcC---CceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 468999999999876654 4699999999999999887632 3578999999999999999888765444444565
Q ss_pred EEeCC-cc-------ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------------
Q 010184 101 RFTSD-SK-------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------------ 160 (516)
Q Consensus 101 ~~~~~-~~-------~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------------ 160 (516)
...++ .. ......++|+++|++.+....-+.+.... ...+....+.++|+||||.+.-.
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~-~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASN-KEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcc-hhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 54443 11 11124689999999998543111000000 01111356789999999998421
Q ss_pred -----hHH---HHHhhccc--c-------eEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHh-------------
Q 010184 161 -----MFR---KVISLTKS--H-------CKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVK------------- 209 (516)
Q Consensus 161 -----~~~---~~l~~~~~--~-------~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~------------- 209 (516)
.|. .++..+.. + +.+.||-.- ...+..+++ +.+|...|.++..
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G------~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKG------IEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhH------HHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 111 22222221 1 122332211 011111211 1222222211110
Q ss_pred --CCCccc-ceeEEEe-----------------------------------ccCC-HHHHHHHHHhh------hhHHH--
Q 010184 210 --GGFIAN-VQCAEVW-----------------------------------CPMT-KEFFSEYLKKE------NSKKK-- 242 (516)
Q Consensus 210 --~g~l~~-~~~~~v~-----------------------------------~~~~-~~~~~~~l~~~------~~~~~-- 242 (516)
.-|+.. -++..+. ...+ ..+++.|-+-. .....
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 001100 0000000 0000 11222221000 00000
Q ss_pred -----------------------HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEe
Q 010184 243 -----------------------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIY 294 (516)
Q Consensus 243 -----------------------~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~ 294 (516)
..++.....|+.++...+.... ..+..+||||+++..++.++..|. ..++|
T Consensus 377 ~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 377 IETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 0011223356776666664332 468899999999999999999982 45799
Q ss_pred cCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccccc---------ccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 295 GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP---------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 295 g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp---------~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|++.+.+|..+...|+.+ .|+|+|+++++|+|+| .+++|+.++.+ |.+.+.||.||+||.|.
T Consensus 456 a~~~~~E~~ii~~ag~~g---~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~p--s~rid~qr~GRtGRqG~ 526 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG---AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERME--NSRVDLQLRGRSGRQGD 526 (762)
T ss_pred CCChHHHHHHHHHcCCCC---eEEEEccccccccCCCCCccccccCCeEEEEecCCC--CcHHHHHhhhcccCCCC
Confidence 999998887777766665 7999999999999999 88999998655 55666999999999884
No 84
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.4e-24 Score=207.94 Aligned_cols=295 Identities=16% Similarity=0.191 Sum_probs=202.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-HhcC-----CCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRIK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~~-----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.+...|+.|+.-++.+ .+++.|-.+..|+|||-++...+ ++.. -.+++|+|+++|+.|..+-+.+........
T Consensus 112 kPskIQe~aLPlll~~-Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~it 190 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAE-PPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELT 190 (477)
T ss_pred CcchHHHhhcchhhcC-CchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeee
Confidence 4666899999977665 45688888999999998877654 4432 358889999999999998888765444333
Q ss_pred EEEEeCCcc--ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhcc-
Q 010184 99 ICRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK- 170 (516)
Q Consensus 99 v~~~~~~~~--~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~~- 170 (516)
+.....+.+ +.-.-..+|+|.|++.+.....+ +..+......++|+|||+.+.+. ...++...++
T Consensus 191 a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k-------lk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK-------LKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred EEEEecCcccccCCcchhheeeCCCccHHHHHHH-------HHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 333222221 11112478999999988664321 22233366789999999998865 2334556665
Q ss_pred cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEec-cCC-HHHHHHHHHhhhhHHHHHHhhh
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-PMT-KEFFSEYLKKENSKKKQALYVM 248 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~-~~~-~~~~~~~l~~~~~~~~~~l~~~ 248 (516)
..+.+++|||-...-.. ... .++.+.....+.. .++ ...++-| +.+..
T Consensus 264 ~~QllLFSATf~e~V~~---Fa~-----------------kivpn~n~i~Lk~eel~L~~IkQly----------v~C~~ 313 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAA---FAL-----------------KIVPNANVIILKREELALDNIKQLY----------VLCAC 313 (477)
T ss_pred cceEEeeechhHHHHHH---HHH-----------------HhcCCCceeeeehhhccccchhhhe----------eeccc
Confidence 55789999998532111 000 0111111111100 000 0011111 22333
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
..+|+.++-.|..... -...||||.++..+..++..+ .+..+||++...+|..++++|+.+ ..+|||+|++
T Consensus 314 ~~~K~~~l~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLitTnV 389 (477)
T KOG0332|consen 314 RDDKYQALVNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLITTNV 389 (477)
T ss_pred hhhHHHHHHHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEEEech
Confidence 4457777776664443 347899999999999999999 367899999999999999999998 9999999999
Q ss_pred CcccccccccCEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010184 324 GDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~-----~s~~~~~Qr~GR~~R~g~ 361 (516)
.++|||++.+++||.|+-|. ..+..|+||+||+||-|.
T Consensus 390 ~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGk 432 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGK 432 (477)
T ss_pred hhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccc
Confidence 99999999999999985442 268899999999999994
No 85
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=219.32 Aligned_cols=293 Identities=14% Similarity=0.149 Sum_probs=202.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------------CCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+.-.|..||.-++.+. +.+.-+.||+|||.+++.++.+. +-..+|++||++|+.|.+..+.+..
T Consensus 41 kpTlIQs~aIplaLEgK---DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGK---DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred CcchhhhcccchhhcCc---ceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 46678999999888875 88888999999999998866321 2369999999999999998888654
Q ss_pred CCCCC--cEEEEeCC-----ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----
Q 010184 93 TIQDD--QICRFTSD-----SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM---- 161 (516)
Q Consensus 93 ~~~~~--~v~~~~~~-----~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~---- 161 (516)
..-.. ++.-+.++ ....+.+.++|+|+||..+...... ..+.. .....++|+|||+.+.+=.
T Consensus 118 ~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~-----~~~~~--~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 118 EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAA-----GVLEY--LDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhh-----ccchh--hhheeeEEechhhhhhhcccHHH
Confidence 22211 11111211 1122457799999999888554221 11111 2556899999999998654
Q ss_pred HHHHHhhcccc-eEEEEeccCCCCccchhhhHh--hhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhh
Q 010184 162 FRKVISLTKSH-CKLGLTATLVREDERITDLNF--LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (516)
Q Consensus 162 ~~~~l~~~~~~-~~l~LTATp~~~~~~~~~l~~--~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~ 238 (516)
+.++...++.. +.++||||.... +..|.. +-+|.+....-.++...+ ......+.|.
T Consensus 191 lk~l~~~LPr~~Q~~LmSATl~dD---v~~LKkL~l~nPviLkl~e~el~~~d---qL~Qy~v~cs-------------- 250 (569)
T KOG0346|consen 191 LKKLRSHLPRIYQCFLMSATLSDD---VQALKKLFLHNPVILKLTEGELPNPD---QLTQYQVKCS-------------- 250 (569)
T ss_pred HHHHHHhCCchhhheeehhhhhhH---HHHHHHHhccCCeEEEeccccCCCcc---cceEEEEEec--------------
Confidence 44555555433 468999999532 223333 345666544333332211 1222333343
Q ss_pred hHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---C--CceEecCCCHHHHHHHHHHHhcCC
Q 010184 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSR 313 (516)
Q Consensus 239 ~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~~l~~F~~~~ 313 (516)
...|+.++-.|++..- -..|+|||+|+++.+..+--.| + ..++.|.+|.+-|.-++++|+.|
T Consensus 251 ----------e~DKflllyallKL~L--I~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG- 317 (569)
T KOG0346|consen 251 ----------EEDKFLLLYALLKLRL--IRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG- 317 (569)
T ss_pred ----------cchhHHHHHHHHHHHH--hcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-
Confidence 2233334444443322 1459999999999988776655 3 56899999999999999999998
Q ss_pred CccEEEEeCC-----------------------------------CcccccccccCEEEEecCCCCCHHHHHHHhhcccc
Q 010184 314 DLNTIFLSKV-----------------------------------GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILR 358 (516)
Q Consensus 314 ~~~vLv~t~~-----------------------------------~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R 358 (516)
.+.+||+|+. .++|||+..+++|+.++.|. +...|+||+||++|
T Consensus 318 ~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~-t~~sYIHRvGRTaR 396 (569)
T KOG0346|consen 318 LYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE-TVTSYIHRVGRTAR 396 (569)
T ss_pred ceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC-chHHHHHhcccccc
Confidence 9999999981 35899999999999998886 99999999999999
Q ss_pred cCC
Q 010184 359 AKG 361 (516)
Q Consensus 359 ~g~ 361 (516)
.+.
T Consensus 397 g~n 399 (569)
T KOG0346|consen 397 GNN 399 (569)
T ss_pred CCC
Confidence 883
No 86
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.93 E-value=8.1e-24 Score=232.92 Aligned_cols=282 Identities=19% Similarity=0.179 Sum_probs=184.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCC-CCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
...|+.++||+|||.+...++... +++++|+.|+++++.|..+.+.+.++.. +..|+....... ......+|+|+
T Consensus 18 ~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~-~~s~~t~I~v~ 96 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN-KVSRRTRLEVV 96 (819)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc-ccCCCCcEEEE
Confidence 389999999999999988776532 4689999999999999999987655433 234543333221 23345789999
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCcc-CCchh----H-HHHHhhcc-cceEEEEeccCCCCccchhhhH
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHM----F-RKVISLTK-SHCKLGLTATLVREDERITDLN 192 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~-~~~~~----~-~~~l~~~~-~~~~l~LTATp~~~~~~~~~l~ 192 (516)
|++.+...... ...-..+++|||||+|. ..+.. + ..+...+. ..++|+||||+... . +.
T Consensus 97 T~G~Llr~l~~---------d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~--~---l~ 162 (819)
T TIGR01970 97 TEGILTRMIQD---------DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE--R---LS 162 (819)
T ss_pred CCcHHHHHHhh---------CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH--H---HH
Confidence 99988653211 11126789999999994 44421 2 22333332 34679999998632 1 23
Q ss_pred hhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeE
Q 010184 193 FLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKI 271 (516)
Q Consensus 193 ~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~ 271 (516)
.+++ +..... .|-..+++ ..+.+..... ++ . . .....+..++. ..+.++
T Consensus 163 ~~l~~~~vI~~-------~gr~~pVe--~~y~~~~~~~---~~-~-----~--------~v~~~l~~~l~----~~~g~i 212 (819)
T TIGR01970 163 SLLPDAPVVES-------EGRSFPVE--IRYLPLRGDQ---RL-E-----D--------AVSRAVEHALA----SETGSI 212 (819)
T ss_pred HHcCCCcEEEe-------cCcceeee--eEEeecchhh---hH-H-----H--------HHHHHHHHHHH----hcCCcE
Confidence 3443 221111 11111222 1222221110 00 0 0 00012222332 234689
Q ss_pred EEEeccHHHHHHHHHHhC--------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCC-
Q 010184 272 IVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH- 342 (516)
Q Consensus 272 iVF~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~- 342 (516)
|||++....++.++..|. +..+||++++++|.++++.|+++ ..+|||||+++++|||+|++++||.+.-+
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEEecchHhhcccccCceEEEEcCccc
Confidence 999999999988888773 23589999999999999999997 89999999999999999999999986322
Q ss_pred ----------------CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCC
Q 010184 343 ----------------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (516)
Q Consensus 343 ----------------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (516)
+-|...+.||.||+||.++ ...|+|.++.
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~--------------G~cyrL~t~~ 336 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRLEP--------------GVCYRLWSEE 336 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCCCC--------------CEEEEeCCHH
Confidence 1245678999999999874 3557777654
No 87
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.92 E-value=5e-24 Score=232.65 Aligned_cols=295 Identities=16% Similarity=0.145 Sum_probs=179.9
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
....|+++|.++++.+.........++.++||+|||.+++.++.. .++++||++|+.+|+.|+.+.|+++++. .
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~---~ 217 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGA---P 217 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---C
Confidence 346799999999999887412247899999999999999876643 3678999999999999999999997653 6
Q ss_pred EEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hH--
Q 010184 99 ICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-- 162 (516)
Q Consensus 99 v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~-- 162 (516)
+..++++.... ..+..+|+|+|++.+.. . -.++++||+||+|...-. .|
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~-------------p--~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL-------------P--FKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc-------------c--ccCCCEEEEECCCccccccCcCCCCcH
Confidence 77788764321 13568999999865521 1 267899999999987532 11
Q ss_pred HHH---HhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 163 RKV---ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 163 ~~~---l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
+.+ .........+++||||..+.-.. ..-|...+ .....-.....++.+... ++..+... ..
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~~----~~~g~~~~-~~l~~r~~~~~~p~v~~i----d~~~~~~~----~~-- 347 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLAN----AQQGRYRL-LRLTKRAGGARLPEVEII----DMRELLRG----EN-- 347 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHHH----HhccceeE-EEeccccccCCCCeEEEE----echhhhhh----cc--
Confidence 222 12233456889999996321110 00111000 000000000111222111 11110000 00
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccH-----------------------------------------
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL----------------------------------------- 278 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~----------------------------------------- 278 (516)
.. ... ..+...++..- ..|+++|||++.+
T Consensus 348 --~~---~ls----~~l~~~i~~~l-~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 348 --GS---FLS----PPLLEAIKQRL-ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ 417 (679)
T ss_pred --cC---CCC----HHHHHHHHHHH-HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC
Confidence 00 000 01111111111 3344555554421
Q ss_pred -------------------HHHHHHHHHh-------CCceEecCCC--HHHHHHHHHHHhcCCCccEEEEeCCCcccccc
Q 010184 279 -------------------FALTEYAMKL-------RKPMIYGATS--HVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (516)
Q Consensus 279 -------------------~~~~~l~~~L-------~~~~i~g~~~--~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDl 330 (516)
.-.+.+++.| ++..+|+++. ..++.++++.|+++ +.++||+|++++.|+|+
T Consensus 418 ~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 418 EPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILIGTQMLAKGHDF 496 (679)
T ss_pred CCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEEEChhhccCCCC
Confidence 1233344433 3456889886 46789999999997 99999999999999999
Q ss_pred cccCEEEEecCCC--C---------CHHHHHHHhhcccccC
Q 010184 331 PEANVIIQISSHA--G---------SRRQEAQRLGRILRAK 360 (516)
Q Consensus 331 p~a~~vI~~~~~~--~---------s~~~~~Qr~GR~~R~g 360 (516)
|++++|++++.+. . ..+.+.|+.||++|.+
T Consensus 497 p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~ 537 (679)
T PRK05580 497 PNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAE 537 (679)
T ss_pred CCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCC
Confidence 9999887664431 1 1257899999999977
No 88
>COG4889 Predicted helicase [General function prediction only]
Probab=99.92 E-value=5.8e-25 Score=228.82 Aligned_cols=350 Identities=18% Similarity=0.245 Sum_probs=222.3
Q ss_pred ccccCccCCCCC-C--ccccCCCCCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc-CCCEEEEEeC
Q 010184 3 EEYDFRNDNVNP-D--LNMELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLATN 77 (516)
Q Consensus 3 ~eydf~~~~~~~-~--~~~~l~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P~ 77 (516)
.|-+...+...| . ..+.++...+|||||+.|+++.+.. ....+|-|.|.||+|||++++.+...+ ..++|++||+
T Consensus 136 ~es~IDW~~f~p~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPS 215 (1518)
T COG4889 136 AESPIDWDIFDPTELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPS 215 (1518)
T ss_pred hcCCCChhhcCccccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecch
Confidence 344555566666 3 3455777789999999999988765 123588999999999999999988665 4799999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCcEEEEeCCc----c-------------------------ccccCCCcEEEEchhhhhccC
Q 010184 78 AVSVDQWAFQFKLWSTIQDDQICRFTSDS----K-------------------------ERFRGNAGVVVTTYNMVAFGG 128 (516)
Q Consensus 78 ~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~----~-------------------------~~~~~~~~IvV~T~~~l~~~~ 128 (516)
..|..|..++...-..++-....+.+... . ..-..+.-||++||+++-...
T Consensus 216 IsLLsQTlrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~ 295 (1518)
T COG4889 216 ISLLSQTLREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIK 295 (1518)
T ss_pred HHHHHHHHHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHH
Confidence 99999977665543222211111111100 0 001245679999999885421
Q ss_pred CCChhHHHHHHHHccCCccEEEEccCccCCch--------hHHHHH--hhcccceEEEEeccCCCCccc--------h--
Q 010184 129 KRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------MFRKVI--SLTKSHCKLGLTATLVREDER--------I-- 188 (516)
Q Consensus 129 ~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--------~~~~~l--~~~~~~~~l~LTATp~~~~~~--------~-- 188 (516)
-.......+|++||+||||+.... .|.++. ..+++..+|.|||||---.+. -
T Consensus 296 --------eAQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~ 367 (1518)
T COG4889 296 --------EAQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAE 367 (1518)
T ss_pred --------HHHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccce
Confidence 122333478999999999997642 344333 345677899999999531111 0
Q ss_pred ---hhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHH-HHHHHHh
Q 010184 189 ---TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE-FLIRFHE 264 (516)
Q Consensus 189 ---~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~-~ll~~~~ 264 (516)
.+-...+||..++..+.+.++.+.+..+.+....+.- +....-+.........-+....-.|.--|- -|.+...
T Consensus 368 l~SMDDe~~fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~--~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g 445 (1518)
T COG4889 368 LSSMDDELTFGEEFHRLGFGEAVERDLLTDYKVMVLAVDK--EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNG 445 (1518)
T ss_pred eeccchhhhhchhhhcccHHHHHHhhhhccceEEEEEech--hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhcc
Confidence 1223568999999999999999999988766555432 111110100000000000000000100000 0000000
Q ss_pred -----------hcCCCeEEEEeccHHHHHHHHHHh--------------------CCceEecCCCHHHHHHHHHH---Hh
Q 010184 265 -----------QQRGDKIIVFADNLFALTEYAMKL--------------------RKPMIYGATSHVERTKILQA---FK 310 (516)
Q Consensus 265 -----------~~~~~k~iVF~~~~~~~~~l~~~L--------------------~~~~i~g~~~~~eR~~~l~~---F~ 310 (516)
..+-.+.|-||.++...+.+++.+ .+..++|.|...+|...+.. |.
T Consensus 446 ~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~ 525 (1518)
T COG4889 446 EDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFE 525 (1518)
T ss_pred ccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCC
Confidence 022245677888877766666554 13458999999999655443 34
Q ss_pred cCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 010184 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (516)
Q Consensus 311 ~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~ 364 (516)
.+ .++||--.+++++|+|+|..|-||++++. .|..+.+|++||++|..++|+
T Consensus 526 ~n-eckIlSNaRcLSEGVDVPaLDsViFf~pr-~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 526 PN-ECKILSNARCLSEGVDVPALDSVIFFDPR-SSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred cc-hheeeccchhhhcCCCccccceEEEecCc-hhHHHHHHHHHHHHHhCcCCc
Confidence 44 78888778999999999999999999654 588999999999999998766
No 89
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=5.5e-23 Score=195.40 Aligned_cols=290 Identities=19% Similarity=0.252 Sum_probs=197.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHH---HHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 20 LKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVG---VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~---i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
+.=..+|.|+|+.+-+.++.. +.....++.+-||+|||-+. +..+...+.++.+..|....+-..+..++.-| +
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~aF--~ 169 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQAF--S 169 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHhh--c
Confidence 344578999999998877654 22358899999999999654 45556678999999999988888888888743 3
Q ss_pred CCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc---hhHHHHHhhc--c
Q 010184 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMFRKVISLT--K 170 (516)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~---~~~~~~l~~~--~ 170 (516)
...|..++|+..+.+. ..-||-||.+.+.. ...|+++|+||++.++- ++..-.++.. .
T Consensus 170 ~~~I~~Lyg~S~~~fr-~plvVaTtHQLlrF----------------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 170 NCDIDLLYGDSDSYFR-APLVVATTHQLLRF----------------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred cCCeeeEecCCchhcc-ccEEEEehHHHHHH----------------HhhccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 3478888998887665 33344455554432 25689999999999983 3444333321 2
Q ss_pred cceEEEEeccCCCCccchh---hhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 171 SHCKLGLTATLVREDERIT---DLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~---~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
....|.|||||.+.-.... .+..+.-|..|- +.....| .-+|+.. +..++
T Consensus 233 ~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH-------~~pLpvP---kf~w~~~----~~k~l------------- 285 (441)
T COG4098 233 EGATIYLTATPTKKLERKILKGNLRILKLPARFH-------GKPLPVP---KFVWIGN----WNKKL------------- 285 (441)
T ss_pred cCceEEEecCChHHHHHHhhhCCeeEeecchhhc-------CCCCCCC---ceEEecc----HHHHh-------------
Confidence 3468999999985433211 011010111100 0000001 1222211 11222
Q ss_pred hCcchHH-HHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------CceEecCCCHHHHHHHHHHHhcCCCccEEE
Q 010184 248 MNPNKFR-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (516)
Q Consensus 248 ~~~~k~~-~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv 319 (516)
+.+|+. .+...++.+. ..|..++||.+++..++..+..|+ +..+|+... .|.+.+++|++| ++.+||
T Consensus 286 -~r~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G-~~~lLi 360 (441)
T COG4098 286 -QRNKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDG-KITLLI 360 (441)
T ss_pred -hhccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcC-ceEEEE
Confidence 011111 3445555565 778999999999999999999882 346777655 799999999998 999999
Q ss_pred EeCCCcccccccccCEEEEecCC--CCCHHHHHHHhhcccccCC
Q 010184 320 LSKVGDNSIDIPEANVIIQISSH--AGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 320 ~t~~~~~GlDlp~a~~vI~~~~~--~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|.++++|+.+|.+++.|+-+-+ + +....+|..||+||.-.
T Consensus 361 TTTILERGVTfp~vdV~Vlgaeh~vf-TesaLVQIaGRvGRs~~ 403 (441)
T COG4098 361 TTTILERGVTFPNVDVFVLGAEHRVF-TESALVQIAGRVGRSLE 403 (441)
T ss_pred EeehhhcccccccceEEEecCCcccc-cHHHHHHHhhhccCCCc
Confidence 99999999999999998876433 4 78889999999999874
No 90
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.92 E-value=1.2e-23 Score=231.98 Aligned_cols=283 Identities=17% Similarity=0.171 Sum_probs=185.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCC-CCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
++.++.+|||+|||.+...++... .++++|++|+++++.|..+.+...++.. +..|+...+.... ......|+|+
T Consensus 21 ~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~-~~~~t~I~v~ 99 (812)
T PRK11664 21 PQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESK-VGPNTRLEVV 99 (812)
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccc-cCCCCcEEEE
Confidence 389999999999999988766442 3689999999999999999987665443 2345544443321 2344689999
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccC-Cc-h----hHHHHHhhcc-cceEEEEeccCCCCccchhhhH
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PA-H----MFRKVISLTK-SHCKLGLTATLVREDERITDLN 192 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~-~~-~----~~~~~l~~~~-~~~~l~LTATp~~~~~~~~~l~ 192 (516)
|++.+..... ....-..+++|||||+|.. .+ . ....++..+. ..++++||||+... .+.
T Consensus 100 T~G~Llr~l~---------~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-----~l~ 165 (812)
T PRK11664 100 TEGILTRMIQ---------RDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-----RLQ 165 (812)
T ss_pred ChhHHHHHHh---------hCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-----HHH
Confidence 9998855321 1112367899999999973 22 2 1223333332 34679999999532 233
Q ss_pred hhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeE
Q 010184 193 FLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKI 271 (516)
Q Consensus 193 ~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~ 271 (516)
.+++ +..... .|-..++ ...+.+..... ++ . ... ...+..++ . ..+..+
T Consensus 166 ~~~~~~~~I~~-------~gr~~pV--~~~y~~~~~~~---~~-~-----~~v--------~~~l~~~l---~-~~~g~i 215 (812)
T PRK11664 166 QLLPDAPVIVS-------EGRSFPV--ERRYQPLPAHQ---RF-D-----EAV--------ARATAELL---R-QESGSL 215 (812)
T ss_pred HhcCCCCEEEe-------cCccccc--eEEeccCchhh---hH-H-----HHH--------HHHHHHHH---H-hCCCCE
Confidence 3443 111110 1111122 12222222110 11 0 000 01222222 2 335689
Q ss_pred EEEeccHHHHHHHHHHhC--------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCC-
Q 010184 272 IVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH- 342 (516)
Q Consensus 272 iVF~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~- 342 (516)
|||++....++.+++.|. +..+||++++.+|.++++.|.++ ..+|||||+++++|||+|++++||.....
T Consensus 216 LVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlvATnIAErsLtIp~V~~VID~Gl~r 294 (812)
T PRK11664 216 LLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVLATNIAETSLTIEGIRLVVDSGLER 294 (812)
T ss_pred EEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEEecchHHhcccccCceEEEECCCcc
Confidence 999999999999998884 23489999999999999999997 99999999999999999999999985211
Q ss_pred ----------------CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 343 ----------------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 343 ----------------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
+-|...+.||.||+||.++ ...|.|.++..
T Consensus 295 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~--------------G~cyrL~t~~~ 340 (812)
T PRK11664 295 VARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP--------------GICLHLYSKEQ 340 (812)
T ss_pred cccccccCCcceeEEEeechhhhhhhccccCCCCC--------------cEEEEecCHHH
Confidence 1245689999999999873 45677776543
No 91
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=7.3e-25 Score=233.08 Aligned_cols=324 Identities=16% Similarity=0.187 Sum_probs=208.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-C------------CCEEEEEeChhhHHHHHHHHHHh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K------------KSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~------------~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+...|.++.+.++..+ .+++|++|||+|||.+|...|.+. + -++++|+|.++|+....+.|.+-
T Consensus 110 ~fN~iQS~vFp~aY~Sn--eNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kk 187 (1230)
T KOG0952|consen 110 EFNRIQSEVFPVAYKSN--ENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKK 187 (1230)
T ss_pred HHHHHHHHhhhhhhcCC--CCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhh
Confidence 35556888888888766 399999999999999998776432 1 37999999999999999888876
Q ss_pred hCCCCCcEEEEeCCccccc--cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHH-
Q 010184 92 STIQDDQICRFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKV- 165 (516)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~~--~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~- 165 (516)
+.--+..|..++|+..-.- -..++|+||||+.+--..+++.....+ + ....+||+||+|.+..+ ....+
T Consensus 188 l~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l---~--~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 188 LAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSAL---F--SLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred cccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhh---h--hheeeEEeeeehhhcCcccchHHHHH
Confidence 5444568899999854110 245899999999887666555433222 2 55789999999999864 33222
Q ss_pred ---H----hhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcc-cceeEEEeccCCHHHHHHHHHhh
Q 010184 166 ---I----SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA-NVQCAEVWCPMTKEFFSEYLKKE 237 (516)
Q Consensus 166 ---l----~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~-~~~~~~v~~~~~~~~~~~~l~~~ 237 (516)
+ .....-+.+|||||.++-.+ +..+++-..+.--+ ....+|.+ ++....+-++..
T Consensus 263 aRtlr~vessqs~IRivgLSATlPN~eD----vA~fL~vn~~~glf--sFd~~yRPvpL~~~~iG~k~~----------- 325 (1230)
T KOG0952|consen 263 ARTLRLVESSQSMIRIVGLSATLPNYED----VARFLRVNPYAGLF--SFDQRYRPVPLTQGFIGIKGK----------- 325 (1230)
T ss_pred HHHHHHHHhhhhheEEEEeeccCCCHHH----HHHHhcCCCcccee--eecccccccceeeeEEeeecc-----------
Confidence 2 22234578999999985333 33333322111000 00011111 111111111111
Q ss_pred hhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----------------------------C
Q 010184 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------R 289 (516)
Q Consensus 238 ~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----------------------------~ 289 (516)
..+.....+.. -..+.+++++ ..|+.++|||.++......|+.| +
T Consensus 326 --~~~~~~~~~d~---~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g 398 (1230)
T KOG0952|consen 326 --KNRQQKKNIDE---VCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQG 398 (1230)
T ss_pred --cchhhhhhHHH---HHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhh
Confidence 00000111111 1233444555 57999999999988887777777 1
Q ss_pred CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE-----ecCCCCC-----HHHHHHHhhccccc
Q 010184 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ-----ISSHAGS-----RRQEAQRLGRILRA 359 (516)
Q Consensus 290 ~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~-----~~~~~~s-----~~~~~Qr~GR~~R~ 359 (516)
..+.|.++...+|..+.+.|+.| .++||+||..++.|+||| |.+||. +++..++ --+.+|..||+||+
T Consensus 399 ~~iHhAGm~r~DR~l~E~~F~~G-~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRP 476 (1230)
T KOG0952|consen 399 MGIHHAGMLRSDRQLVEKEFKEG-HIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRP 476 (1230)
T ss_pred hhhcccccchhhHHHHHHHHhcC-CceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCC
Confidence 24578889999999999999998 999999999999999999 555553 2222222 33459999999999
Q ss_pred CCCccccccCCCCceeEEEEEEEcCCchhhhHH
Q 010184 360 KGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (516)
Q Consensus 360 g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (516)
.-.+ ....+-+.+.|+.+-+.+
T Consensus 477 qFd~-----------~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 477 QFDS-----------SGEGIIITTRDKLDHYES 498 (1230)
T ss_pred CCCC-----------CceEEEEecccHHHHHHH
Confidence 8532 244444555565554443
No 92
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.92 E-value=7.2e-25 Score=212.93 Aligned_cols=304 Identities=19% Similarity=0.207 Sum_probs=225.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-Hhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
.++.|.|++.++.++... +.+-.+-||+|||.+.+..+ +++ +-+.|++.|+++|+.|..+-++.+.....
T Consensus 42 ~~ptpiqRKTipliLe~~---dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~ 118 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILEGR---DVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTK 118 (529)
T ss_pred CCCCchhcccccceeecc---ccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccc
Confidence 468999999999988874 77778899999999988765 333 24899999999999999887777655444
Q ss_pred CcEE-EEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----HHh
Q 010184 97 DQIC-RFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VIS 167 (516)
Q Consensus 97 ~~v~-~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~ 167 (516)
.+.. .+.|+..+. +...++|+++|+..+....- ++. +.-....+||+||++++....|+. ++.
T Consensus 119 lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v------em~--l~l~sveyVVfdEadrlfemgfqeql~e~l~ 190 (529)
T KOG0337|consen 119 LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV------EMT--LTLSSVEYVVFDEADRLFEMGFQEQLHEILS 190 (529)
T ss_pred hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh------hee--ccccceeeeeehhhhHHHhhhhHHHHHHHHH
Confidence 4544 344443322 35678999999998876531 111 333667899999999998775554 444
Q ss_pred hcc-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeE-EEeccCCHHHHHHHHHhhhhHHHHHH
Q 010184 168 LTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQAL 245 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~-~v~~~~~~~~~~~~l~~~~~~~~~~l 245 (516)
.++ .++.+.+|||.++. +.+..+.|...|+... .+....++. .+...+
T Consensus 191 rl~~~~QTllfSatlp~~-------------------lv~fakaGl~~p~lVRldvetkise~-----------lk~~f~ 240 (529)
T KOG0337|consen 191 RLPESRQTLLFSATLPRD-------------------LVDFAKAGLVPPVLVRLDVETKISEL-----------LKVRFF 240 (529)
T ss_pred hCCCcceEEEEeccCchh-------------------hHHHHHccCCCCceEEeehhhhcchh-----------hhhhee
Confidence 443 45889999999742 2234445555554322 111111111 111223
Q ss_pred hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEE
Q 010184 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (516)
Q Consensus 246 ~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~ 320 (516)
.+...+|..++..++..+. ..+.++||+.+..+++.+...| ....++|.+.+.-|..-+.+|..+ +..+++.
T Consensus 241 ~~~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~lvv 317 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSILVV 317 (529)
T ss_pred eeccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccceEEE
Confidence 3445567777777776653 3568999999999999998888 366899999999999999999998 9999999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCC
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (516)
|+++++|+|+|-.+.||.++.+. ....|++|+||+.|+|. ...+|++|..+
T Consensus 318 TdvaaRG~diplldnvinyd~p~-~~klFvhRVgr~aragr-------------tg~aYs~V~~~ 368 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPP-DDKLFVHRVGRVARAGR-------------TGRAYSLVAST 368 (529)
T ss_pred ehhhhccCCCccccccccccCCC-CCceEEEEecchhhccc-------------cceEEEEEecc
Confidence 99999999999999999998876 88899999999999884 46789988754
No 93
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.4e-23 Score=227.31 Aligned_cols=320 Identities=17% Similarity=0.186 Sum_probs=188.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
.+++.|..+.-.+. . +.|..+.||+|||+++..++. ..++.++|++|+..|+.|-.+.+..++...+..++.
T Consensus 78 ~p~~vQl~~~~~l~-~----G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~ 152 (790)
T PRK09200 78 RPYDVQLIGALVLH-E----GNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGL 152 (790)
T ss_pred CCchHHHHhHHHHc-C----CceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 44555555544332 2 239999999999999987764 347899999999999999888887776666678888
Q ss_pred EeCCcc-c---cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----------------
Q 010184 102 FTSDSK-E---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----------------- 160 (516)
Q Consensus 102 ~~~~~~-~---~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----------------- 160 (516)
+.|+.. . +....++|+++|++.+....-+.+.... ........+.++|+||+|.+.-.
T Consensus 153 i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~-~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~ 231 (790)
T PRK09200 153 NFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADS-KEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSN 231 (790)
T ss_pred EeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccc-hhhhcccccceEEEeccccceeccCCCceeeeCCCccccH
Confidence 887654 1 1224589999998777432111100000 01122366789999999997521
Q ss_pred hHH---HHHhhccc--c-------eEEEEeccCCCCccchhhhHhhhC-CccccccHHHH---H----------hC--CC
Q 010184 161 MFR---KVISLTKS--H-------CKLGLTATLVREDERITDLNFLIG-PKLYEANWLDL---V----------KG--GF 212 (516)
Q Consensus 161 ~~~---~~l~~~~~--~-------~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l---~----------~~--g~ 212 (516)
.|. .+...+.. + ..+.||..-. ..+..+++ +.+|.....++ + .. -|
T Consensus 232 ~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~------~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 232 LYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGI------EKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred HHHHHHHHHHhcccCCCeEEecCCCeEEecHhHH------HHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 111 22222211 1 1222322111 01111111 11111111000 0 00 01
Q ss_pred ccc-ceeEEEe-------------------------ccCC-----------HHHHHHHHHhh------hhHHHH------
Q 010184 213 IAN-VQCAEVW-------------------------CPMT-----------KEFFSEYLKKE------NSKKKQ------ 243 (516)
Q Consensus 213 l~~-~~~~~v~-------------------------~~~~-----------~~~~~~~l~~~------~~~~~~------ 243 (516)
+.. -++..+. ++.+ ..+++.|.+-. ......
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 110 0000000 0000 11222232100 000000
Q ss_pred -------------------HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCH
Q 010184 244 -------------------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSH 299 (516)
Q Consensus 244 -------------------~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~ 299 (516)
.++.....|+.++..++.... ..+.++||||+++..++.++..|. +..+||++.+
T Consensus 386 l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred CcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 001122346666666554322 468899999999999999999993 4579999998
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCCcccccc---cccC-----EEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDI---PEAN-----VIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 300 ~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDl---p~a~-----~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.++..+...++.+ .|+|||+++++|+|+ |.+. +||.++.|. |++.|.||.||+||.|.
T Consensus 465 ~e~~~i~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~-s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 465 KEAQIIAEAGQKG---AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME-SRRVDLQLRGRSGRQGD 530 (790)
T ss_pred HHHHHHHHcCCCC---eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-CHHHHHHhhccccCCCC
Confidence 8888777777654 799999999999999 6888 999997774 99999999999999984
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.1e-23 Score=222.16 Aligned_cols=267 Identities=18% Similarity=0.149 Sum_probs=164.2
Q ss_pred EEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCC
Q 010184 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNA 114 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~ 114 (516)
+|.+|||+|||.+++.++.. .++++||++|+.+|+.|+.+.|++.++. .+.+++++.... ..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~---~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGS---QVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---cEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 47899999999999876643 3678999999999999999999987653 577777764321 13568
Q ss_pred cEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hH-----HHHHhhcccceEEEEeccCCCC
Q 010184 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-----RKVISLTKSHCKLGLTATLVRE 184 (516)
Q Consensus 115 ~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~-----~~~l~~~~~~~~l~LTATp~~~ 184 (516)
.|+|+|++.+.. . -.++++||+||+|...-. .| ...........+|++||||..+
T Consensus 78 ~IVVGTrsalf~-------------p--~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 78 LVVIGTRSALFL-------------P--FKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred CEEECChHHHcC-------------c--ccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 999999976521 1 267899999999997632 22 1222333455689999999732
Q ss_pred ccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHh
Q 010184 185 DERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264 (516)
Q Consensus 185 ~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~ 264 (516)
.-. ...-|... .....+-.....++.+.+.. +..+..... ..+ .++..+.+..
T Consensus 143 s~~----~~~~g~~~-~~~l~~r~~~~~~p~v~vid----~~~~~~~~~--------------ls~---~l~~~i~~~l- 195 (505)
T TIGR00595 143 SYH----NAKQKAYR-LLVLTRRVSGRKPPEVKLID----MRKEPRQSF--------------LSP---ELITAIEQTL- 195 (505)
T ss_pred HHH----HHhcCCeE-EeechhhhcCCCCCeEEEEe----cccccccCC--------------ccH---HHHHHHHHHH-
Confidence 211 00111100 01111111111222222211 111000000 000 1122222222
Q ss_pred hcCCCeEEEEeccHHH------------------------------------------------------------HHHH
Q 010184 265 QQRGDKIIVFADNLFA------------------------------------------------------------LTEY 284 (516)
Q Consensus 265 ~~~~~k~iVF~~~~~~------------------------------------------------------------~~~l 284 (516)
..|+.+|||+|.+.. .+.+
T Consensus 196 -~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~ 274 (505)
T TIGR00595 196 -AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQV 274 (505)
T ss_pred -HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHH
Confidence 356667777443211 2334
Q ss_pred HHHh-------CCceEecCCCHHHH--HHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCC--CC---------
Q 010184 285 AMKL-------RKPMIYGATSHVER--TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH--AG--------- 344 (516)
Q Consensus 285 ~~~L-------~~~~i~g~~~~~eR--~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~--~~--------- 344 (516)
++.| ++..+|++++..++ .++++.|+++ +.++||+|++++.|+|+|++++|++++.+ ..
T Consensus 275 ~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~ 353 (505)
T TIGR00595 275 EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAER 353 (505)
T ss_pred HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHH
Confidence 4433 24568999877655 8899999997 99999999999999999999988765333 11
Q ss_pred CHHHHHHHhhcccccC
Q 010184 345 SRRQEAQRLGRILRAK 360 (516)
Q Consensus 345 s~~~~~Qr~GR~~R~g 360 (516)
..+.+.|+.||+||.+
T Consensus 354 ~~~ll~q~~GRagR~~ 369 (505)
T TIGR00595 354 GFQLLTQVAGRAGRAE 369 (505)
T ss_pred HHHHHHHHHhccCCCC
Confidence 1367899999999987
No 95
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=7.9e-24 Score=225.70 Aligned_cols=327 Identities=18% Similarity=0.190 Sum_probs=193.9
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
.+|||+.+.+..+.-.. +.|..++||+|||+++..++. ..++.++|++|+..|+.|-.+.+.+++..-+..+..
T Consensus 54 g~~p~~vQlig~~~l~~---G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~~ 130 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHK---GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGL 130 (745)
T ss_pred CCCccchHHhhhhhhcC---CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEEE
Confidence 34555444444333222 338889999999999887652 236789999999999999888888877666678888
Q ss_pred EeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc---cceEE
Q 010184 102 FTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK---SHCKL 175 (516)
Q Consensus 102 ~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~---~~~~l 175 (516)
+.++.... ..-.++|+++|+..+....-|.... ...+.+....++++|+||+|++.-...+..+-.-. ....+
T Consensus 131 i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~-~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~l 209 (745)
T TIGR00963 131 ILSGMSPEERREAYACDITYGTNNELGFDYLRDNMA-HSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTEL 209 (745)
T ss_pred EeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccc-cchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchHH
Confidence 88764321 1234799999999773322221100 01122334778999999999987543332221111 11224
Q ss_pred EEeccCCCC--------------------ccchhhhHhhhC-Cccccc---cHHHHHhC------------CCccc-cee
Q 010184 176 GLTATLVRE--------------------DERITDLNFLIG-PKLYEA---NWLDLVKG------------GFIAN-VQC 218 (516)
Q Consensus 176 ~LTATp~~~--------------------~~~~~~l~~~~g-p~~~~~---~~~~l~~~------------g~l~~-~~~ 218 (516)
.++|||... +.-...+..+++ +.+|.. .|...+.. -|+.. -++
T Consensus 210 y~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V 289 (745)
T TIGR00963 210 YLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGEV 289 (745)
T ss_pred HHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEE
Confidence 445554310 000011222222 122221 11111110 01110 000
Q ss_pred EEEec----cC--------------------------------CHHHHHHHHHhh------hhHHH--H-----------
Q 010184 219 AEVWC----PM--------------------------------TKEFFSEYLKKE------NSKKK--Q----------- 243 (516)
Q Consensus 219 ~~v~~----~~--------------------------------~~~~~~~~l~~~------~~~~~--~----------- 243 (516)
..+.- .| ...+++.|.+-. ..... .
T Consensus 290 ~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IP 369 (745)
T TIGR00963 290 VIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVVP 369 (745)
T ss_pred EEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEeC
Confidence 00000 00 011222221000 00000 0
Q ss_pred ------------HHhhhCcchHHHHHHHH-HHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHH
Q 010184 244 ------------ALYVMNPNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKI 305 (516)
Q Consensus 244 ------------~l~~~~~~k~~~~~~ll-~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~ 305 (516)
.++.....|+.++...+ +.| ..|..+||||+++..++.++..|. ..++||. +.+|...
T Consensus 370 tnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa~ 445 (745)
T TIGR00963 370 TNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREAE 445 (745)
T ss_pred CCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHHH
Confidence 00111234665554444 455 579999999999999999999993 3468888 7799999
Q ss_pred HHHHhcCCCccEEEEeCCCcccccccc-------cCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 306 LQAFKCSRDLNTIFLSKVGDNSIDIPE-------ANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 306 l~~F~~~~~~~vLv~t~~~~~GlDlp~-------a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+..|..+ ...|+|||+++++|+|++. .-+||.+..|- |++.+.|+.||+||.|.
T Consensus 446 ii~~ag~-~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~-s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 446 IIAQAGR-KGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE-SRRIDNQLRGRSGRQGD 506 (745)
T ss_pred HHHhcCC-CceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC-cHHHHHHHhccccCCCC
Confidence 9999886 9999999999999999998 45899987774 99999999999999994
No 96
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.3e-23 Score=219.84 Aligned_cols=323 Identities=15% Similarity=0.151 Sum_probs=193.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
...++|.|..++..++.+. |..+.||+|||+++..++.. .++.++||+|+..|+.|-.+++..++..-+..+
T Consensus 101 g~~p~~VQ~~~~~~ll~G~-----Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv 175 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR-----LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTV 175 (656)
T ss_pred CCCCChHHHHHHHHHhCCC-----eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEE
Confidence 3568889999999887542 88999999999999877643 357899999999999998888887765556678
Q ss_pred EEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHH--------H----------HHHHHccCCccEEEEccCccCC
Q 010184 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESE--------K----------IIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 100 ~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~--------~----------~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
..+.|+.... ....++|+++|...+....-|.+... . .....-.+.+.++|+||++.+.
T Consensus 176 ~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 176 GCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 8877764321 23468999999988766544432111 0 0111223667899999999864
Q ss_pred ch-------------------hHHHH---Hhhccc--c-------eEEEEeccCCCCccchhhhHhhhCC--ccccc--c
Q 010184 159 AH-------------------MFRKV---ISLTKS--H-------CKLGLTATLVREDERITDLNFLIGP--KLYEA--N 203 (516)
Q Consensus 159 ~~-------------------~~~~~---l~~~~~--~-------~~l~LTATp~~~~~~~~~l~~~~gp--~~~~~--~ 203 (516)
-. .|..+ ...+.. + +.+.||..-. ..+..+++. .+|.. .
T Consensus 256 iDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~------~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 256 IDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGR------ARIAELAESLPPAWRGAVR 329 (656)
T ss_pred eccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHH------HHHHHHhCcchhhcccchH
Confidence 11 11111 111211 1 2233332110 011111111 11110 0
Q ss_pred HHHHHhC------------CCccc-ceeEEEe-------------------------ccC-----------CHHHHHHHH
Q 010184 204 WLDLVKG------------GFIAN-VQCAEVW-------------------------CPM-----------TKEFFSEYL 234 (516)
Q Consensus 204 ~~~l~~~------------g~l~~-~~~~~v~-------------------------~~~-----------~~~~~~~~l 234 (516)
+...+.. -|+.. -++..+. ++. ...+++.|.
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 1111100 01110 0000000 000 012233332
Q ss_pred Hhh------hhHHH--H-----------------------HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHH
Q 010184 235 KKE------NSKKK--Q-----------------------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283 (516)
Q Consensus 235 ~~~------~~~~~--~-----------------------~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~ 283 (516)
+-. ..... . .++.....|+..+..++.... ..+..+||||+++..++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH-AQGRPVLVGTRSVAASER 488 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHH
Confidence 100 00000 0 001122346777777775543 356789999999999999
Q ss_pred HHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccccc---ccC-----EEEEecCCCCCHHHHH
Q 010184 284 YAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP---EAN-----VIIQISSHAGSRRQEA 350 (516)
Q Consensus 284 l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp---~a~-----~vI~~~~~~~s~~~~~ 350 (516)
++..|. +..+||+.+ +|.+.+..|... +..|+|||+++++|+|++ ++. +||.++.|. |.+.|.
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~-~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~-s~r~y~ 564 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQ-RGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD-SARIDR 564 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCC-CCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC-CHHHHH
Confidence 999993 457999866 444555555554 557999999999999999 554 899997774 999999
Q ss_pred HHhhcccccCC
Q 010184 351 QRLGRILRAKG 361 (516)
Q Consensus 351 Qr~GR~~R~g~ 361 (516)
||+||+||.|.
T Consensus 565 hr~GRTGRqG~ 575 (656)
T PRK12898 565 QLAGRCGRQGD 575 (656)
T ss_pred HhcccccCCCC
Confidence 99999999884
No 97
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=5.7e-24 Score=218.71 Aligned_cols=389 Identities=20% Similarity=0.265 Sum_probs=246.4
Q ss_pred CCCCHHHHHHHHHHHhC----------CCCcccEEEecCCCcHHHHHHHHH----Hh-cCCCEEEEEeChhhHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAA----CR-IKKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~i----~~-~~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..+.|||.-+++.++.+ ..+-.|||+.-||+|||++.+.++ .+ ..+.+|+|+|-.+ +.+|..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNT-lQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINT-LQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHH-HHHHHHHh
Confidence 35789998888765432 223578999999999999988765 22 2489999999998 77899999
Q ss_pred HHhhCC-C-C-------CcEEEEeCCccc---------cccCCCcEEEEchhhhhccC--------------CCC-----
Q 010184 89 KLWSTI-Q-D-------DQICRFTSDSKE---------RFRGNAGVVVTTYNMVAFGG--------------KRS----- 131 (516)
Q Consensus 89 ~~~~~~-~-~-------~~v~~~~~~~~~---------~~~~~~~IvV~T~~~l~~~~--------------~r~----- 131 (516)
..|..- + + ..|.++..+.+- .|-...+|++.-|+|++-.. +|.
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i 411 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFI 411 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCccc
Confidence 999532 0 0 123344443331 12355789999999886431 121
Q ss_pred --------hhH-HHHHHHHccCCccEEEEccCccCCch--hHHHHHhhcccceEEEEeccCCCCccchh-hhHhhhCCcc
Q 010184 132 --------EES-EKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL 199 (516)
Q Consensus 132 --------~~~-~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~~~gp~~ 199 (516)
.++ ..+...|....+++||+||.|++++- ...-.+..+..+++|.|||-|.+++-.+- -+..+..|+.
T Consensus 412 ~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~y 491 (1387)
T KOG1016|consen 412 KDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKY 491 (1387)
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccc
Confidence 011 12223344556789999999999985 44556788889999999999998653311 1111112211
Q ss_pred ----------ccc----------c------------------HHHHHhCC------CcccceeEEEeccCCHHH---HHH
Q 010184 200 ----------YEA----------N------------------WLDLVKGG------FIANVQCAEVWCPMTKEF---FSE 232 (516)
Q Consensus 200 ----------~~~----------~------------------~~~l~~~g------~l~~~~~~~v~~~~~~~~---~~~ 232 (516)
|+. + ..-..+++ .++......+.+.++.-+ |..
T Consensus 492 LGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~ 571 (1387)
T KOG1016|consen 492 LGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRN 571 (1387)
T ss_pred cchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHH
Confidence 000 0 00001111 122222233333443322 222
Q ss_pred HHHhhhhH-------------HH-----------HHHh------------------------------------------
Q 010184 233 YLKKENSK-------------KK-----------QALY------------------------------------------ 246 (516)
Q Consensus 233 ~l~~~~~~-------------~~-----------~~l~------------------------------------------ 246 (516)
|+ ....+ +. .+++
T Consensus 572 Fm-~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~l 650 (1387)
T KOG1016|consen 572 FM-LDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPL 650 (1387)
T ss_pred HH-HHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcc
Confidence 22 00000 00 0000
Q ss_pred --------------------------hhCcchH-HHHHHHH---------------------HHHhhcCCCeEEEEeccH
Q 010184 247 --------------------------VMNPNKF-RACEFLI---------------------RFHEQQRGDKIIVFADNL 278 (516)
Q Consensus 247 --------------------------~~~~~k~-~~~~~ll---------------------~~~~~~~~~k~iVF~~~~ 278 (516)
..++.+. .....+. +... .-|.|+|||+++.
T Consensus 651 aSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~-~~g~kil~fSq~l 729 (1387)
T KOG1016|consen 651 ASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDEST-QIGEKILIFSQNL 729 (1387)
T ss_pred cchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeecccc-ccCceEEEeecch
Confidence 0000011 1111111 1111 4578999999999
Q ss_pred HHHHHHHHHhC-----------------------CceEecCCCHHHHHHHHHHHhcCCCcc--EEEEeCCCccccccccc
Q 010184 279 FALTEYAMKLR-----------------------KPMIYGATSHVERTKILQAFKCSRDLN--TIFLSKVGDNSIDIPEA 333 (516)
Q Consensus 279 ~~~~~l~~~L~-----------------------~~~i~g~~~~~eR~~~l~~F~~~~~~~--vLv~t~~~~~GlDlp~a 333 (516)
..++.|.+.|+ +..++|.++..+|.+++++|++.+.+. ++++|+++..||||-.+
T Consensus 730 ~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsa 809 (1387)
T KOG1016|consen 730 TALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISA 809 (1387)
T ss_pred hHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeecc
Confidence 99999988882 124789999999999999999986655 56669999999999999
Q ss_pred CEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHcCCceEEEecCC
Q 010184 334 NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLP 413 (516)
Q Consensus 334 ~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~vi~~~~ 413 (516)
+-+|+++.-| ++-..+|++.|+.|.| |.+.+|+|+||...+.|..+..+. +.+||..-+|+.+..
T Consensus 810 nr~~ifda~w-npchdaqavcRvyrYG-----------Q~KpcfvYRlVmD~~lEkkIydRQ---IsKqGmsdRvVDd~n 874 (1387)
T KOG1016|consen 810 NRCIIFDACW-NPCHDAQAVCRVYRYG-----------QQKPCFVYRLVMDNSLEKKIYDRQ---ISKQGMSDRVVDDAN 874 (1387)
T ss_pred ceEEEEEeec-Cccccchhhhhhhhhc-----------CcCceeEEeehhhhhhHHHHHHHH---HhhccchhhhhcccC
Confidence 9555454555 8999999999999999 888999999999999998776543 678999999998766
Q ss_pred CCCCCCCcccCCHHHHHHHHHHH
Q 010184 414 PPDSGADLSYHRLDEQLALLGKV 436 (516)
Q Consensus 414 ~~~~~~~~~~~~~~e~~~lL~~~ 436 (516)
++.+ + +.+|...||...
T Consensus 875 p~an-----~-s~Ke~enLl~~~ 891 (1387)
T KOG1016|consen 875 PDAN-----I-SQKELENLLMYD 891 (1387)
T ss_pred cccc-----c-cHHHHHHHhhhh
Confidence 5433 2 445666677544
No 98
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.91 E-value=5.3e-24 Score=228.41 Aligned_cols=296 Identities=18% Similarity=0.163 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-HhcC---------CC-EEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRIK---------KS-CLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~~---------~~-~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.++|.|..|++.+..+. ++|.++.||+|||+.++.++ .+.. +| +||+||+++|+.|..+++.+|+.
T Consensus 387 k~~~IQ~qAiP~ImsGr---dvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k 463 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGR---DVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLK 463 (997)
T ss_pred CCcchhhhhcchhccCc---ceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 78999999999988764 99999999999999997655 3321 33 99999999999999999998876
Q ss_pred CCCCcEEEEeCCcc-c----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHH
Q 010184 94 IQDDQICRFTSDSK-E----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (516)
Q Consensus 94 ~~~~~v~~~~~~~~-~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~ 164 (516)
..+..+....|+.. . .+.....|+|+|++.+....--++ -....-.+.-++|+||++++... ....
T Consensus 464 ~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~-----grvtnlrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 464 LLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANS-----GRVTNLRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred hcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcC-----CccccccccceeeechhhhhheeccCcccch
Confidence 66655544444432 1 134559999999976643211000 00111134459999999999853 2233
Q ss_pred HHhhccc-ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHH
Q 010184 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (516)
Q Consensus 165 ~l~~~~~-~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~ 243 (516)
++..+.. ++.+++|||.++.-.. + -.+.++ .|+. +.|......+. ...+.
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~---l---a~~vl~-------------~Pve---iiv~~~svV~k-------~V~q~ 589 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEA---L---ARKVLK-------------KPVE---IIVGGRSVVCK-------EVTQV 589 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHH---H---HHHhhc-------------CCee---EEEccceeEec-------cceEE
Confidence 7777654 4678889998764211 1 111111 1111 11100000000 00011
Q ss_pred HHhhh-CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccE
Q 010184 244 ALYVM-NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (516)
Q Consensus 244 ~l~~~-~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~v 317 (516)
+..+. .+.|+.-+..||.... ...++||||++...++.+.+.|- +..+||+.++.+|..+++.|+++ .+++
T Consensus 590 v~V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~L 666 (997)
T KOG0334|consen 590 VRVCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVNL 666 (997)
T ss_pred EEEecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-CceE
Confidence 11111 3456666777775443 36799999999999999999992 33499999999999999999998 9999
Q ss_pred EEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 318 Lv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|++|+++++|+|++...+||.|+.+ ....+|++|.||++|.|+
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~p-nh~edyvhR~gRTgragr 709 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFP-NHYEDYVHRVGRTGRAGR 709 (997)
T ss_pred EEehhhhhcccccccceEEEEcccc-hhHHHHHHHhcccccCCc
Confidence 9999999999999999999999877 488899999999999995
No 99
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=1.7e-22 Score=230.16 Aligned_cols=264 Identities=16% Similarity=0.194 Sum_probs=170.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCC---
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD--- 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~--- 96 (516)
...|+|+|..++..++.+. +.++.+|||+|||..++.++. ..+.++|||+||++|+.|+.+.|.++....+
T Consensus 76 g~~p~~iQ~~~i~~il~G~---d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD---SFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC---eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 4589999999999988765 899999999999986654442 2357899999999999999999998864322
Q ss_pred CcEEEEeCCcccc--------c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-------
Q 010184 97 DQICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------- 160 (516)
Q Consensus 97 ~~v~~~~~~~~~~--------~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------- 160 (516)
..+..++|+.... + .+.++|+|+|++.+.. .+..+.. .++++|+||||++...
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~----------~~~~l~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSK----------NYDELGP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHH----------HHHHhcC-CCCEEEEeChHhhhhccccHHHH
Confidence 2244566653211 1 2468999999998843 2344433 7899999999999752
Q ss_pred ----hH-----HHHH----------------------hhcccc-e--EEEEeccCCCCccchhhhHhhhCCccccccHHH
Q 010184 161 ----MF-----RKVI----------------------SLTKSH-C--KLGLTATLVREDERITDLNFLIGPKLYEANWLD 206 (516)
Q Consensus 161 ----~~-----~~~l----------------------~~~~~~-~--~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~ 206 (516)
.| ..++ ..++.. + .+.+|||+............+++ ++...
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~---~~v~~-- 296 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLG---FEVGG-- 296 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccc---eEecC--
Confidence 12 1111 112111 1 35679995432221111111111 11000
Q ss_pred HHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccH---HHHHH
Q 010184 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL---FALTE 283 (516)
Q Consensus 207 l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~---~~~~~ 283 (516)
....+.++. ....... .+...+..+++.. +.++||||++. +.++.
T Consensus 297 --~~~~~r~I~--~~~~~~~------------------------~~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 297 --GSDTLRNVV--DVYVEDE------------------------DLKETLLEIVKKL----GTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred --ccccccceE--EEEEecc------------------------cHHHHHHHHHHHc----CCCEEEEEeccccHHHHHH
Confidence 000111111 1111000 0012233444332 46799999998 99999
Q ss_pred HHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEE----eCCCcccccccc-cCEEEEecCC
Q 010184 284 YAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSH 342 (516)
Q Consensus 284 l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~----t~~~~~GlDlp~-a~~vI~~~~~ 342 (516)
++..|. +..+||++++ ++++.|++| ++++||+ |+++++|||+|+ ++.||+++.|
T Consensus 345 l~~~L~~~g~~a~~lhg~~~~----~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKPK----EDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCCH----HHHHHHHcC-CCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999883 4579999873 689999998 9999999 489999999999 7999998555
No 100
>PRK09694 helicase Cas3; Provisional
Probab=99.90 E-value=9.2e-22 Score=216.80 Aligned_cols=310 Identities=16% Similarity=0.143 Sum_probs=185.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhC--CC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST--IQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~--~~ 95 (516)
..++||+|..+..... + ++..||.+|||+|||.+++.++..+ ..++++..|+.++++|.++++.+|.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~~-~--pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPL-Q--PGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhcc-C--CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 5689999998854322 2 2378999999999999999887543 25899999999999999999876531 12
Q ss_pred CCcEEEEeCCccc--------------------------ccc------CCCcEEEEchhhhhcc-CCCChhHHHHHHHHc
Q 010184 96 DDQICRFTSDSKE--------------------------RFR------GNAGVVVTTYNMVAFG-GKRSEESEKIIEEIR 142 (516)
Q Consensus 96 ~~~v~~~~~~~~~--------------------------~~~------~~~~IvV~T~~~l~~~-~~r~~~~~~~~~~l~ 142 (516)
...+...+|...- .+. -...|+|+|.+.+... ....+...+. +
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~---~- 436 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRG---F- 436 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHH---H-
Confidence 3345555553210 000 1268999999766532 2222222222 2
Q ss_pred cCCccEEEEccCccCCchh---HHHHHhhcc--cceEEEEeccCCCCccchhhhHhhhCCc---cc--cccHHHHHhCCC
Q 010184 143 NREWGLLLMDEVHVVPAHM---FRKVISLTK--SHCKLGLTATLVREDERITDLNFLIGPK---LY--EANWLDLVKGGF 212 (516)
Q Consensus 143 ~~~~~~vIlDEaH~~~~~~---~~~~l~~~~--~~~~l~LTATp~~~~~~~~~l~~~~gp~---~~--~~~~~~l~~~g~ 212 (516)
...-.+|||||+|.+...+ ...+++.+. ...+|+||||++..-. ..+...++.. .. .+++.....
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r--~~L~~a~~~~~~~~~~~~YPlvt~~~--- 511 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATLK--QKLLDTYGGHDPVELSSAYPLITWRG--- 511 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHH--HHHHHHhccccccccccccccccccc---
Confidence 1223589999999997643 233333322 2358999999974221 1122212211 00 000000000
Q ss_pred cccceeEEEeccCCHHHHHHHHHhhhhHHHHHHh------hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHH
Q 010184 213 IANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY------VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAM 286 (516)
Q Consensus 213 l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~------~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~ 286 (516)
........+...++. + . .+..+. ........++..+++.. ..|.+++||||++..++.+++
T Consensus 512 --~~~~~~~~~~~~~~~----~----~-~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~ 578 (878)
T PRK09694 512 --VNGAQRFDLSAHPEQ----L----P-ARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQ 578 (878)
T ss_pred --cccceeeeccccccc----c----C-cceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHH
Confidence 000000000000000 0 0 000000 00011123455555544 357899999999999999998
Q ss_pred HhC--------CceEecCCCHHHH----HHHHHHH-hcCC--CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHH
Q 010184 287 KLR--------KPMIYGATSHVER----TKILQAF-KCSR--DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (516)
Q Consensus 287 ~L~--------~~~i~g~~~~~eR----~~~l~~F-~~~~--~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Q 351 (516)
.|. +..+||+++..+| .++++.| +++. ...|||+|++++.|+|+ ++|++|.... ....++|
T Consensus 579 ~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDI-d~DvlItdla---PidsLiQ 654 (878)
T PRK09694 579 RLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDL-DFDWLITQLC---PVDLLFQ 654 (878)
T ss_pred HHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeec-CCCeEEECCC---CHHHHHH
Confidence 883 3579999999999 4578888 4441 25799999999999999 5899987544 3568999
Q ss_pred HhhcccccCC
Q 010184 352 RLGRILRAKG 361 (516)
Q Consensus 352 r~GR~~R~g~ 361 (516)
|+||++|.+.
T Consensus 655 RaGR~~R~~~ 664 (878)
T PRK09694 655 RLGRLHRHHR 664 (878)
T ss_pred HHhccCCCCC
Confidence 9999999985
No 101
>PRK14701 reverse gyrase; Provisional
Probab=99.89 E-value=1.5e-22 Score=234.92 Aligned_cols=283 Identities=17% Similarity=0.169 Sum_probs=181.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCC--CC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ--DD 97 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~--~~ 97 (516)
.++++|.|.+++..++.+. +.++.+|||+|||+.++.++.. .+.++|||+||++|+.|+.+.|..++... ..
T Consensus 77 G~~pt~iQ~~~i~~il~G~---d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGK---SFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 4579999999999998875 8999999999999965544332 24589999999999999999999875432 23
Q ss_pred cEEEEeCCcccc--------c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc---------
Q 010184 98 QICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (516)
Q Consensus 98 ~v~~~~~~~~~~--------~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--------- 159 (516)
.+..++|+.... + .+..+|+|+|++.+... +..+....++++|+||||++..
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~----------~~~l~~~~i~~iVVDEAD~ml~~~knid~~L 223 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARN----------FPEMKHLKFDFIFVDDVDAFLKASKNIDRSL 223 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHh----------HHHHhhCCCCEEEEECceeccccccccchhh
Confidence 455666664311 1 34689999999977442 2222236789999999999863
Q ss_pred --hhHHH--------HHh----------------------hccc-ce-EEEEeccCCCCccchhhhHhhhCCccccccHH
Q 010184 160 --HMFRK--------VIS----------------------LTKS-HC-KLGLTATLVREDERITDLNFLIGPKLYEANWL 205 (516)
Q Consensus 160 --~~~~~--------~l~----------------------~~~~-~~-~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~ 205 (516)
..|.. ++. .++. +. .+.+|||..........+. .+..+.....
T Consensus 224 ~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~---~~l~f~v~~~ 300 (1638)
T PRK14701 224 QLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR---ELLGFEVGSG 300 (1638)
T ss_pred hcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh---cCeEEEecCC
Confidence 12211 111 1111 22 4668999875322211111 1111111100
Q ss_pred HHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHH---HH
Q 010184 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LT 282 (516)
Q Consensus 206 ~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~---~~ 282 (516)
...+..+. ...+.... +.| ..+..+++. .+..+||||++... ++
T Consensus 301 ----~~~lr~i~--~~yi~~~~----------------------~~k-~~L~~ll~~----~g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 301 ----RSALRNIV--DVYLNPEK----------------------IIK-EHVRELLKK----LGKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred ----CCCCCCcE--EEEEECCH----------------------HHH-HHHHHHHHh----CCCCeEEEEeccccchHHH
Confidence 00111111 11110010 011 123333432 25689999998664 58
Q ss_pred HHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEe----CCCcccccccc-cCEEEEecCCCC---CHHHH
Q 010184 283 EYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS----KVGDNSIDIPE-ANVIIQISSHAG---SRRQE 349 (516)
Q Consensus 283 ~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t----~~~~~GlDlp~-a~~vI~~~~~~~---s~~~~ 349 (516)
.+++.|. +..+||+ |.+.+++|+++ +++|||+| +++++|||+|+ +..||+++.| + |...+
T Consensus 348 ~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~P-k~~~~~e~~ 420 (1638)
T PRK14701 348 EIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVP-KFRFRVDLE 420 (1638)
T ss_pred HHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccCEEEEeCCC-CCCcchhhc
Confidence 8888883 4568884 88999999998 99999999 58999999999 8999999665 3 44333
Q ss_pred -------------HHHhhcccccCC
Q 010184 350 -------------AQRLGRILRAKG 361 (516)
Q Consensus 350 -------------~Qr~GR~~R~g~ 361 (516)
.+++||++|.|.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 421 DPTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred ccchhhhhcchHHHHHhhhhcccCC
Confidence 455699999884
No 102
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=5.6e-22 Score=191.76 Aligned_cols=290 Identities=17% Similarity=0.199 Sum_probs=206.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
+|...|+.|+.....+. +.++.+++|+|||.+....+... ...+|+++|+++|+.|.......+....+..
T Consensus 48 kPSaIQqraI~p~i~G~---dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGH---DVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred CchHHHhccccccccCC---ceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 57778999988777654 89999999999999977766543 1469999999999999998888776666556
Q ss_pred EEEEeCCcccc------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHHhh
Q 010184 99 ICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (516)
Q Consensus 99 v~~~~~~~~~~------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~ 168 (516)
+....|+..-. ....+.|+|.|++.+.....+. .+......+.|+||++.+....|. .+...
T Consensus 125 v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--------~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~ 196 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--------SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQE 196 (397)
T ss_pred eeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--------cccccceeEEeecchHhhhccchHHHHHHHHHH
Confidence 66555543211 2344789999998776544331 333456789999999999876544 44555
Q ss_pred ccc-ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 169 TKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 169 ~~~-~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
++. -+.+++|||-+..-.. ..-.+.-.|........++.-+| .+. ..+..
T Consensus 197 lp~~vQv~l~SAT~p~~vl~-vt~~f~~~pv~i~vkk~~ltl~g------------------ikq----------~~i~v 247 (397)
T KOG0327|consen 197 LPSDVQVVLLSATMPSDVLE-VTKKFMREPVRILVKKDELTLEG------------------IKQ----------FYINV 247 (397)
T ss_pred cCcchhheeecccCcHHHHH-HHHHhccCceEEEecchhhhhhh------------------eee----------eeeec
Confidence 543 3679999998642211 11112222322222222211111 000 00111
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
..+.|+..+..+.+ .-...++|||+.+.++.+...|. ...+||.+.+.+|..++..|+.| ..+|||+|.
T Consensus 248 ~k~~k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlIttd 321 (397)
T KOG0327|consen 248 EKEEKLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLITTD 321 (397)
T ss_pred cccccccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEeecc
Confidence 12225555555554 23468999999999999999993 45799999999999999999998 999999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.+++|+|+..++.||.++-| .+...|++|+||++|.|.
T Consensus 322 l~argidv~~~slvinydlP-~~~~~yihR~gr~gr~gr 359 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLP-ARKENYIHRIGRAGRFGR 359 (397)
T ss_pred ccccccchhhcceeeeeccc-cchhhhhhhcccccccCC
Confidence 99999999999999999877 499999999999999884
No 103
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.2e-20 Score=189.01 Aligned_cols=94 Identities=15% Similarity=0.295 Sum_probs=85.6
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
..+.+++|-+-++++++.|.++| ++.++|++...-||.++++..+.| .++|||..+.+-+|+|+|+++.|.+++
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~DvLVGINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccEEEeehhhhccCCCcceeEEEEee
Confidence 46799999999999999999999 467899999999999999999998 999999999999999999999887764
Q ss_pred CC----CCCHHHHHHHhhcccccC
Q 010184 341 SH----AGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~~----~~s~~~~~Qr~GR~~R~g 360 (516)
.. .+|.+.++|.+||+.|.-
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred cCccccccccchHHHHHHHHhhcc
Confidence 43 358888999999999987
No 104
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=1.7e-21 Score=214.05 Aligned_cols=301 Identities=17% Similarity=0.160 Sum_probs=212.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
...||-|.++|..++.+. ++.+.+|||.||++++..++.-..+-+|||.|..+|+......+.+. +++ ...++
T Consensus 263 ~~FR~~Q~eaI~~~l~Gk---d~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~-~I~---a~~L~ 335 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLSGK---DCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK-GIP---ACFLS 335 (941)
T ss_pred ccCChhHHHHHHHHHcCC---ceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc-Ccc---eeecc
Confidence 368999999999777765 99999999999999999888888889999999999999887777443 333 33444
Q ss_pred CCcccc--------c-cC--CCcEEEEchhhhhccCCCChhHHHHHHHHcc-CCccEEEEccCccCCc------hhHHH-
Q 010184 104 SDSKER--------F-RG--NAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------HMFRK- 164 (516)
Q Consensus 104 ~~~~~~--------~-~~--~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~------~~~~~- 164 (516)
+..... + .+ ...|+-.||+++..... ....+..+.. ...-++|+||||++.. +.|++
T Consensus 336 s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~----l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 336 SIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEG----LLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred ccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccc----hhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 443321 1 23 57889999999987532 1222233321 2256899999999873 33433
Q ss_pred --HHhhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 165 --VISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 165 --~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
+...+..+.+|+||||-...-.. ++...++ |. +....+..+-...+|....+..
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~--DIi~~L~l~~~~--------~~~~sfnR~NL~yeV~~k~~~~----------- 470 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVRE--DVIRSLGLRNPE--------LFKSSFNRPNLKYEVSPKTDKD----------- 470 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHH--HHHHHhCCCCcc--------eecccCCCCCceEEEEeccCcc-----------
Confidence 34455667899999998532211 2222222 22 2222333333333333322200
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCC
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
.-+..+..+-.+ .++...||+|.++..++.++..| ++.++|++++..+|..+-..|..+ +
T Consensus 471 -----------~~~~~~~~~~~~---~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~ 535 (941)
T KOG0351|consen 471 -----------ALLDILEESKLR---HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-K 535 (941)
T ss_pred -----------chHHHHHHhhhc---CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-C
Confidence 001122222233 35788999999999999999999 367899999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEE
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv 382 (516)
++|+++|=+.|+|||-|++..||++. .++|...|.|-.||+||-|. ...-+.+|.+-
T Consensus 536 ~~VivATVAFGMGIdK~DVR~ViH~~-lPks~E~YYQE~GRAGRDG~----------~s~C~l~y~~~ 592 (941)
T KOG0351|consen 536 IRVIVATVAFGMGIDKPDVRFVIHYS-LPKSFEGYYQEAGRAGRDGL----------PSSCVLLYGYA 592 (941)
T ss_pred CeEEEEEeeccCCCCCCceeEEEECC-CchhHHHHHHhccccCcCCC----------cceeEEecchh
Confidence 99999999999999999999999994 55799999999999999995 55566666654
No 105
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.87 E-value=2e-20 Score=210.33 Aligned_cols=300 Identities=15% Similarity=0.137 Sum_probs=178.0
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC--CCEEEE--EeCh----hhHHHHHHHHHH
Q 010184 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCL--ATNA----VSVDQWAFQFKL 90 (516)
Q Consensus 19 ~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl--~P~~----~L~~Qw~~e~~~ 90 (516)
..+.......+-.+-+..+.++. ..+|+++||||||.+.=.++...+ ....|+ -|.+ +|+.+..+++..
T Consensus 68 ~~~~~LPi~~~r~~Il~ai~~~~---VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~ 144 (1294)
T PRK11131 68 TYPENLPVSQKKQDILEAIRDHQ---VVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELET 144 (1294)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhh
Confidence 33344444555555555544443 778889999999996433444432 222333 3643 666666666664
Q ss_pred hhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCc-cCCchhHH-----H
Q 010184 91 WSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH-VVPAHMFR-----K 164 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH-~~~~~~~~-----~ 164 (516)
-.+ ..|+.-..-. +.......|+++|+++|....... .. -..+++||||||| +..+..|. +
T Consensus 145 ~lG---~~VGY~vrf~-~~~s~~t~I~v~TpG~LL~~l~~d-------~~--Ls~~~~IIIDEAHERsLn~DfLLg~Lk~ 211 (1294)
T PRK11131 145 ELG---GCVGYKVRFN-DQVSDNTMVKLMTDGILLAEIQQD-------RL--LMQYDTIIIDEAHERSLNIDFILGYLKE 211 (1294)
T ss_pred hhc---ceeceeecCc-cccCCCCCEEEEChHHHHHHHhcC-------Cc--cccCcEEEecCccccccccchHHHHHHH
Confidence 222 1232211111 112345889999999996543211 11 2678999999999 55554332 2
Q ss_pred HHhhcccceEEEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHH---HHHHHHhhhhH
Q 010184 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEF---FSEYLKKENSK 240 (516)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~---~~~~l~~~~~~ 240 (516)
++..-+..++|++|||... . .+...|++ .+.+. .|-..+++. .+.+..... ...++
T Consensus 212 lL~~rpdlKvILmSATid~--e---~fs~~F~~apvI~V-------~Gr~~pVei--~y~p~~~~~~~~~~d~l------ 271 (1294)
T PRK11131 212 LLPRRPDLKVIITSATIDP--E---RFSRHFNNAPIIEV-------SGRTYPVEV--RYRPIVEEADDTERDQL------ 271 (1294)
T ss_pred hhhcCCCceEEEeeCCCCH--H---HHHHHcCCCCEEEE-------cCccccceE--EEeecccccchhhHHHH------
Confidence 2222233578999999942 1 23333432 12111 121122222 222221100 00111
Q ss_pred HHHHHhhhCcchHHHHHHHHH-HHhhcCCCeEEEEeccHHHHHHHHHHhC--------CceEecCCCHHHHHHHHHHHhc
Q 010184 241 KKQALYVMNPNKFRACEFLIR-FHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKC 311 (516)
Q Consensus 241 ~~~~l~~~~~~k~~~~~~ll~-~~~~~~~~k~iVF~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~~l~~F~~ 311 (516)
..+...+. .+. .....+|||++....++.+++.|. +..+||++++++|.++++. .
T Consensus 272 -------------~~ll~~V~~l~~-~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~ 335 (1294)
T PRK11131 272 -------------QAIFDAVDELGR-EGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--H 335 (1294)
T ss_pred -------------HHHHHHHHHHhc-CCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--c
Confidence 11111121 222 445689999999999999999983 2248999999999998775 2
Q ss_pred CCCccEEEEeCCCcccccccccCEEEEec-----------------CCCCCHHHHHHHhhcccccCCCccccccCCCCce
Q 010184 312 SRDLNTIFLSKVGDNSIDIPEANVIIQIS-----------------SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEY 374 (516)
Q Consensus 312 ~~~~~vLv~t~~~~~GlDlp~a~~vI~~~-----------------~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~ 374 (516)
+..+|||+|+++++|||+|++++||.+. ..+.|...+.||.||+||.++
T Consensus 336 -g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~------------- 401 (1294)
T PRK11131 336 -SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSE------------- 401 (1294)
T ss_pred -CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCC-------------
Confidence 3789999999999999999999999852 012367889999999999873
Q ss_pred eEEEEEEEcCC
Q 010184 375 NAFFYSLVSTD 385 (516)
Q Consensus 375 ~~~~y~lv~~~ 385 (516)
...|+|++.+
T Consensus 402 -G~c~rLyte~ 411 (1294)
T PRK11131 402 -GICIRLYSED 411 (1294)
T ss_pred -cEEEEeCCHH
Confidence 4556777644
No 106
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=9.3e-22 Score=207.39 Aligned_cols=317 Identities=17% Similarity=0.125 Sum_probs=209.2
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
+...++|-++|++|+-.+..+. +..++++|.+|||++|-.+|+. -+.++++-.|-++|-+|-.++|+.-|+
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~---SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~--- 365 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGD---SVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG--- 365 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCC---eEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc---
Confidence 4455789999999999876654 8999999999999998766533 357999999999999999999998665
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcccc
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH 172 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~~~ 172 (516)
+++.++|+.. +..++..+|+|-+.|++++-|+.+ .+ +...+||+||+|.+.+. .|.+++-.++.|
T Consensus 366 -DvgLlTGDvq--inPeAsCLIMTTEILRsMLYrgad------li--RDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 -DVGLLTGDVQ--INPEASCLIMTTEILRSMLYRGAD------LI--RDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred -ccceeeccee--eCCCcceEeehHHHHHHHHhcccc------hh--hccceEEEeeeeecccccccccceeeeeecccc
Confidence 5678999876 355688999999999988776643 23 44678999999999864 778877777766
Q ss_pred -eEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCccccee-EEEecc--C------CHHHHHH-HHHhhhhH-
Q 010184 173 -CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQC-AEVWCP--M------TKEFFSE-YLKKENSK- 240 (516)
Q Consensus 173 -~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~-~~v~~~--~------~~~~~~~-~l~~~~~~- 240 (516)
..|+||||.++..+....+...-+..+|-.+. .-.|+.. ...|+. + ...|... |.......
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST-------~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVIST-------SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEec-------CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 56899999987665422221111122221110 0001111 111111 0 0111110 10000000
Q ss_pred --------------H-H--HH---------H----hhhCcchH--HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh
Q 010184 241 --------------K-K--QA---------L----YVMNPNKF--RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (516)
Q Consensus 241 --------------~-~--~~---------l----~~~~~~k~--~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L 288 (516)
. + .. . ...+.++. .....++.+.....--.+||||=++..|+++++.|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 0 0 00 0 00011122 13455565554345567899999999999999888
Q ss_pred --------------------------------------------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 289 --------------------------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 289 --------------------------------------------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
++++.||+.-+--+.-+.-.|+.| -++|||+|-..
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG-lVKVLFATETF 666 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG-LVKVLFATETF 666 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC-ceEEEeehhhh
Confidence 134578888777777778889998 99999999999
Q ss_pred cccccccccCEEEEe-cCC------CCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQI-SSH------AGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~-~~~------~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|.|+-.+|+-- .-+ .-+|-.|.|+.||+||.|-
T Consensus 667 AMGVNMPARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGl 710 (1248)
T KOG0947|consen 667 AMGVNMPARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGL 710 (1248)
T ss_pred hhhcCCCceeEEeeehhhccCcceeecCChhHHhhhcccccccc
Confidence 999999954444421 111 1157789999999999994
No 107
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.87 E-value=2e-20 Score=211.15 Aligned_cols=291 Identities=14% Similarity=0.132 Sum_probs=175.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC----CCEEEEEeChhhHHHHHHHHHHhhCCCCC-c
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQDD-Q 98 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~-~ 98 (516)
.....+..+-+..+-.+. ..||+++||||||.+.=.++...+ +.+++.-|.+..+......+..-++.+.. .
T Consensus 66 LPi~~~~~~Il~~l~~~~---vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~ 142 (1283)
T TIGR01967 66 LPVSAKREDIAEAIAENQ---VVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEK 142 (1283)
T ss_pred CCHHHHHHHHHHHHHhCc---eEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceE
Confidence 333444444455443333 789999999999997644444332 34555668887777777777766555432 2
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCc-cCCchh-----HHHHHhhcccc
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH-VVPAHM-----FRKVISLTKSH 172 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH-~~~~~~-----~~~~l~~~~~~ 172 (516)
|+.-.. ..+.......|.++|.++|....... ..+ ..+++|||||+| +..+.. ..+++...+..
T Consensus 143 VGY~vR-~~~~~s~~T~I~~~TdGiLLr~l~~d-------~~L--~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 143 VGYKVR-FHDQVSSNTLVKLMTDGILLAETQQD-------RFL--SRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred EeeEEc-CCcccCCCceeeeccccHHHHHhhhC-------ccc--ccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 332111 11112445789999999986543210 122 678999999999 455542 23333333445
Q ss_pred eEEEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcc
Q 010184 173 CKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (516)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 251 (516)
++|+||||... ..+..+|+. .+... .|-.-++.. .+.+........ ...
T Consensus 213 KlIlmSATld~-----~~fa~~F~~apvI~V-------~Gr~~PVev--~Y~~~~~~~~~~----------------~~~ 262 (1283)
T TIGR01967 213 KIIITSATIDP-----ERFSRHFNNAPIIEV-------SGRTYPVEV--RYRPLVEEQEDD----------------DLD 262 (1283)
T ss_pred eEEEEeCCcCH-----HHHHHHhcCCCEEEE-------CCCccccee--EEecccccccch----------------hhh
Confidence 78999999942 123444442 11111 122222222 122221100000 000
Q ss_pred hHHHHHHHHH-HHhhcCCCeEEEEeccHHHHHHHHHHhC--------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 252 KFRACEFLIR-FHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 252 k~~~~~~ll~-~~~~~~~~k~iVF~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
+...+..++. .+. .....+|||++....++.+++.|. +..+||++++++|.++++ ..+..+||++|+
T Consensus 263 ~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~---~~~~rkIVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ---PHSGRRIVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhC---CCCCceEEEecc
Confidence 1112222222 122 235689999999999999999883 234899999999998854 433468999999
Q ss_pred CCcccccccccCEEEEecC-----------------CCCCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISS-----------------HAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~-----------------~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|||+|++++||.... .+-|...+.||.||+||.++
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~ 394 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAP 394 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCC
Confidence 9999999999999997531 12377899999999999984
No 108
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.87 E-value=5.8e-21 Score=185.92 Aligned_cols=314 Identities=17% Similarity=0.163 Sum_probs=207.8
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE-EeCC
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR-FTSD 105 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~-~~~~ 105 (516)
.|-|+.|+..+...+ .++.++||||+||++++-.++...++-++|+.|..+|+....+.+.+. ..+...... ++..
T Consensus 22 s~LQE~A~~c~VK~k--~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRK--CDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL-KVPCESLNSKLSTV 98 (641)
T ss_pred ChHHHHHHHHHHhcc--CcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcchhhHH
Confidence 568999999998876 489999999999999999998888889999999999999999988875 343322211 1111
Q ss_pred cccc-------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHcc-CCccEEEEccCccCCc------h---hHHHHHhh
Q 010184 106 SKER-------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------H---MFRKVISL 168 (516)
Q Consensus 106 ~~~~-------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~------~---~~~~~l~~ 168 (516)
.+++ ......++-.||++.+... ++..+..|.+ ....++|+||||++.- + ....+-+.
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~~-----FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATDG-----FQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhhh-----HHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 1111 1234678889999887653 3566666644 4568999999999873 2 33344455
Q ss_pred cccceEEEEeccCCCCccchhhhHh---hhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHH
Q 010184 169 TKSHCKLGLTATLVREDERITDLNF---LIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (516)
Q Consensus 169 ~~~~~~l~LTATp~~~~~~~~~l~~---~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l 245 (516)
++....++||||..+.-.. ++.. +-.|.. .....+-...-||....+...+..-..+
T Consensus 174 ~~~vpwvALTATA~~~VqE--Di~~qL~L~~PVA------------------iFkTP~FR~NLFYD~~~K~~I~D~~~~L 233 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQE--DIAFQLKLRNPVA------------------IFKTPTFRDNLFYDNHMKSFITDCLTVL 233 (641)
T ss_pred CCCCceEEeecccChhHHH--HHHHHHhhcCcHH------------------hccCcchhhhhhHHHHHHHHhhhHhHhH
Confidence 5566689999998653321 2211 111211 1111111111122211100000000000
Q ss_pred hhhCcchHHHHHHHHHHHh------hcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCC
Q 010184 246 YVMNPNKFRACEFLIRFHE------QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 246 ~~~~~~k~~~~~~ll~~~~------~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
-+.+..-+-.++ ..-..-.||+|.+++.++.+|-.|. +..+|.++...||.++-+.|-++ +
T Consensus 234 -------aDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~ 305 (641)
T KOG0352|consen 234 -------ADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-E 305 (641)
T ss_pred -------HHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-C
Confidence 011111111010 0011246999999999999999993 45689999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCch
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~ 387 (516)
+.||++|...++|+|-|++..||+++.+ .|..-|.|--||+||.|. +.+--..|+--+.+.+
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~-qn~AgYYQESGRAGRDGk----------~SyCRLYYsR~D~~~i 367 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPS-QNLAGYYQESGRAGRDGK----------RSYCRLYYSRQDKNAL 367 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCch-hhhHHHHHhccccccCCC----------ccceeeeecccchHHH
Confidence 9999999999999999999999999766 599999999999999995 5555555655444443
No 109
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=3.1e-21 Score=206.53 Aligned_cols=344 Identities=17% Similarity=0.195 Sum_probs=224.7
Q ss_pred HHHHHHHHHhC----CCCcccEEEecCCCcHHHHHHHHHHhc------------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 30 QEKSLSKMFGN----GRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 30 Q~~al~~~~~~----~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
|.....+++.. ...+.||++..+|.|||+..++++... .+..||+||.. +..||..++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s-~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTS-LLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchH-HHHHHHHHHhccCC
Confidence 55555554432 345689999999999999999988543 24689999987 59999999966555
Q ss_pred CCCCcEEEEeCCccc-cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH--HHHhhcc
Q 010184 94 IQDDQICRFTSDSKE-RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR--KVISLTK 170 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~-~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~--~~l~~~~ 170 (516)
.....|.+++|..++ ......+||+|||+++.+ ..+....|-.+|+||+|.++++... +..-.+.
T Consensus 214 ~~~l~v~v~~gr~kd~~el~~~dVVltTy~il~~------------~~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~ 281 (674)
T KOG1001|consen 214 EDKLSIYVYHGRTKDKSELNSYDVVLTTYDILKN------------SPLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLD 281 (674)
T ss_pred ccceEEEEecccccccchhcCCceEEeeHHHhhc------------ccccceeEEEEEeccccccCCcchHhhhhheeec
Confidence 445667788871211 112457799999999975 2233478889999999999987433 3444567
Q ss_pred cceEEEEeccCCCCccchh-hhHhhh--CCcccc------------ccH-HHHH-----------hC--------C----
Q 010184 171 SHCKLGLTATLVREDERIT-DLNFLI--GPKLYE------------ANW-LDLV-----------KG--------G---- 211 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~-~l~~~~--gp~~~~------------~~~-~~l~-----------~~--------g---- 211 (516)
+.++..|||||.++.-... .+..++ .|..-. ..+ .... -. |
T Consensus 282 a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~ 361 (674)
T KOG1001|consen 282 AKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPIL 361 (674)
T ss_pred cceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCcccc
Confidence 8899999999987542211 110000 011100 000 0000 00 1
Q ss_pred CcccceeEEEeccCCHHHHHHHHH--hhhh--------------------------------------------------
Q 010184 212 FIANVQCAEVWCPMTKEFFSEYLK--KENS-------------------------------------------------- 239 (516)
Q Consensus 212 ~l~~~~~~~v~~~~~~~~~~~~l~--~~~~-------------------------------------------------- 239 (516)
.+++......++....+....|-. ....
T Consensus 362 ~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~ 441 (674)
T KOG1001|consen 362 ELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAA 441 (674)
T ss_pred ccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccc
Confidence 223444444555554332111110 0000
Q ss_pred ----HHHHHH---hh------------------------------hC--------------------------------c
Q 010184 240 ----KKKQAL---YV------------------------------MN--------------------------------P 250 (516)
Q Consensus 240 ----~~~~~l---~~------------------------------~~--------------------------------~ 250 (516)
+....+ .. .+ +
T Consensus 442 ~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s 521 (674)
T KOG1001|consen 442 ALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPES 521 (674)
T ss_pred hHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchh
Confidence 000000 00 00 1
Q ss_pred chHHHHHHHHHHHhhcCC-CeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEE-eCC
Q 010184 251 NKFRACEFLIRFHEQQRG-DKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL-SKV 323 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~-~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~-t~~ 323 (516)
.|+..+..++...+ ... .+++||++.+..+..+.-.|. ...++|.+....|.+.+..|..++...+++. .++
T Consensus 522 ~ki~~~~~~l~~~~-~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 522 SKIYAFLKILQAKE-MSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhHHHHHHHhhcc-CCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 12222222222111 111 399999999999988887773 4468899999999999999998877887655 699
Q ss_pred CcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHH
Q 010184 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (516)
|+.|+|+..|++|+..++|| |+....|++.|+||+| |.+.++|++++-.+|+|+.+.+..+++.
T Consensus 601 g~~glnlt~a~~v~~~d~~w-np~~eeQaidR~hrig-----------q~k~v~v~r~~i~dtveer~l~iq~~K~ 664 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWW-NPAVEEQAIDRAHRIG-----------QTKPVKVSRFIIKDTVEERILKIQEKKR 664 (674)
T ss_pred hhhhhchhhhhHHHhhchhc-ChHHHHHHHHHHHHhc-----------ccceeeeeeehhhhccHHHHHHHHHHHH
Confidence 99999999999999998887 9999999999999999 8889999999999999998876555444
No 110
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=3.5e-19 Score=192.56 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=85.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
..+.++||||++...++.+++.|. +.++||++++.+|.++++.|+.+ .+.++|||+.+++|+|+|++++||+++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeCCCcEEEEeC
Confidence 568899999999999999999983 45789999999999999999998 999999999999999999999999886
Q ss_pred C----CCCCHHHHHHHhhcccccC
Q 010184 341 S----HAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~----~~~s~~~~~Qr~GR~~R~g 360 (516)
. .+.|...|+||+||++|..
T Consensus 519 adifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC
Confidence 2 2358899999999999976
No 111
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.1e-20 Score=204.48 Aligned_cols=320 Identities=17% Similarity=0.108 Sum_probs=206.3
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 17 NMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 17 ~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
++.....++|-|+|++|+..+-.+. +.++++|||+|||+++..++.. .+.++++.+|.++|.+|-+++|..-++
T Consensus 111 ~~~~~~~F~LD~fQ~~a~~~Ler~e---sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fg 187 (1041)
T COG4581 111 PPAREYPFELDPFQQEAIAILERGE---SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFG 187 (1041)
T ss_pred cHHHhCCCCcCHHHHHHHHHHhCCC---cEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhh
Confidence 3344456899999999999765554 9999999999999999877644 457899999999999999999987554
Q ss_pred CCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhc
Q 010184 94 IQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT 169 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~ 169 (516)
--...+++++|+.. .+++..++|+|-+.|++++.|..+ .+ .+...||+||+|.+... .|..++-.+
T Consensus 188 dv~~~vGL~TGDv~--IN~~A~clvMTTEILRnMlyrg~~------~~--~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~l 257 (1041)
T COG4581 188 DVADMVGLMTGDVS--INPDAPCLVMTTEILRNMLYRGSE------SL--RDIEWVVFDEVHYIGDRERGVVWEEVIILL 257 (1041)
T ss_pred hhhhhccceeccee--eCCCCceEEeeHHHHHHHhccCcc------cc--cccceEEEEeeeeccccccchhHHHHHHhc
Confidence 22446799999865 356678888888999888766522 22 56678999999999865 788888877
Q ss_pred ccc-eEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEecc-----CC---HHHHH--------H
Q 010184 170 KSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-----MT---KEFFS--------E 232 (516)
Q Consensus 170 ~~~-~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~-----~~---~~~~~--------~ 232 (516)
+.+ ..++||||.....+....+...-+...+-.. ..+-+..-...+++. +- ..+.. .
T Consensus 258 P~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~------t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 258 PDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVS------TEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEe------ecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 766 7899999998655442222221111111000 000000000111111 00 00000 0
Q ss_pred HHH-----hhhhHHHHHHhh----------hCcch-HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh--------
Q 010184 233 YLK-----KENSKKKQALYV----------MNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------- 288 (516)
Q Consensus 233 ~l~-----~~~~~~~~~l~~----------~~~~k-~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------- 288 (516)
+.. ..........+. ..+.+ .+++..+.. ...-.+|+|+=++..|+.++..+
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~----~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK----DNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhh----hcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 000 000000000000 00111 223333321 34556788877777766665544
Q ss_pred --------------------------------------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccc
Q 010184 289 --------------------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (516)
Q Consensus 289 --------------------------------------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDl 330 (516)
+..+.|+++=+..|..+...|+.| -++|+|+|-+.+.|+|.
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G-LvkvvFaTeT~s~GiNm 486 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG-LVKVVFATETFAIGINM 486 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc-ceeEEeehhhhhhhcCC
Confidence 123578889899999999999998 99999999999999999
Q ss_pred cccCEEEEe--------cCCCCCHHHHHHHhhcccccCC
Q 010184 331 PEANVIIQI--------SSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 331 p~a~~vI~~--------~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|.-++|+-- .. +-++..|.|..||+||.|-
T Consensus 487 Partvv~~~l~K~dG~~~r-~L~~gEy~QmsGRAGRRGl 524 (1041)
T COG4581 487 PARTVVFTSLSKFDGNGHR-WLSPGEYTQMSGRAGRRGL 524 (1041)
T ss_pred cccceeeeeeEEecCCcee-ecChhHHHHhhhhhccccc
Confidence 966666532 12 2388999999999999994
No 112
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.85 E-value=1.1e-20 Score=174.13 Aligned_cols=158 Identities=23% Similarity=0.434 Sum_probs=108.3
Q ss_pred CCCCHHHHHHHHHHHhC---C-CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 24 AQPRPYQEKSLSKMFGN---G-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~---~-~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
++|||||.+++..+... . ..+.+++.+|||+|||++++.++..+..+++|+||+..|+.||.++|..+..-.. .+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~-~~ 80 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKY-NF 80 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSE-EE
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhh-hh
Confidence 57999999999988752 2 2358999999999999999998877766999999999999999999976643211 11
Q ss_pred EE-------------EeCCc----cccccCCCcEEEEchhhhhccCCCChhHH---HHHHHHccCCccEEEEccCccCCc
Q 010184 100 CR-------------FTSDS----KERFRGNAGVVVTTYNMVAFGGKRSEESE---KIIEEIRNREWGLLLMDEVHVVPA 159 (516)
Q Consensus 100 ~~-------------~~~~~----~~~~~~~~~IvV~T~~~l~~~~~r~~~~~---~~~~~l~~~~~~~vIlDEaH~~~~ 159 (516)
.. ..... .........++++|++++........... ..........+++||+||||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 00 00000 00113467899999999976422100000 000112235678999999999998
Q ss_pred hh-HHHHHhhcccceEEEEeccCCC
Q 010184 160 HM-FRKVISLTKSHCKLGLTATLVR 183 (516)
Q Consensus 160 ~~-~~~~l~~~~~~~~l~LTATp~~ 183 (516)
.. ++.++. .....+|+|||||.|
T Consensus 161 ~~~~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 161 DSSYREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp HHHHHHHHH-SSCCEEEEEESS-S-
T ss_pred HHHHHHHHc-CCCCeEEEEEeCccC
Confidence 87 888888 678889999999975
No 113
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=8.5e-21 Score=195.72 Aligned_cols=327 Identities=14% Similarity=0.127 Sum_probs=211.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.++|-|+|..|+..+-++. +.++.+-|.+|||.+|-.+|+. -+.++++-.|-++|-+|-++||..=|+ +|
T Consensus 127 PF~LDpFQ~~aI~Cidr~e---SVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~----DV 199 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGE---SVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK----DV 199 (1041)
T ss_pred CcccCchHhhhhhhhcCCc---eEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc----cc
Confidence 3789999999999765544 9999999999999998776644 468999999999999999999987544 68
Q ss_pred EEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc-cceE
Q 010184 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SHCK 174 (516)
Q Consensus 100 ~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~-~~~~ 174 (516)
+..+|+.. +...+.-+|+|-+.|++++-|..+ .+ ++...||+||+|.+.++ .|.+.+-.++ +-+.
T Consensus 200 GLMTGDVT--InP~ASCLVMTTEILRsMLYRGSE---vm-----rEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 200 GLMTGDVT--INPDASCLVMTTEILRSMLYRGSE---VM-----REVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred ceeeccee--eCCCCceeeeHHHHHHHHHhccch---Hh-----heeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 99999865 344577889999999888777633 23 56678999999999976 4555444444 4467
Q ss_pred EEEeccCCCCccchhhhHhhhCC---cccc-ccHHHHHhCCCcccc------eeEEEeccCCHHHHHHHHHhhhhHH---
Q 010184 175 LGLTATLVREDERITDLNFLIGP---KLYE-ANWLDLVKGGFIANV------QCAEVWCPMTKEFFSEYLKKENSKK--- 241 (516)
Q Consensus 175 l~LTATp~~~~~~~~~l~~~~gp---~~~~-~~~~~l~~~g~l~~~------~~~~v~~~~~~~~~~~~l~~~~~~~--- 241 (516)
+.||||.++.......+..+-.. .+|. +....|+ -|+-|. ......-.+-.+-+...+.......
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQ--HyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQ--HYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcce--eeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 99999998644432222222221 1111 0000111 010000 0000000111121221110000000
Q ss_pred ----------HHHHhhh---CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh--------------------
Q 010184 242 ----------KQALYVM---NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------------- 288 (516)
Q Consensus 242 ----------~~~l~~~---~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------------------- 288 (516)
+-..... .++-+.++..++. .....+||||=+++.|+.+|-.+
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 0000001 1122344444442 55788999999999999988666
Q ss_pred ------------------------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe-----
Q 010184 289 ------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI----- 339 (516)
Q Consensus 289 ------------------------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~----- 339 (516)
++.+.|+++-+--++-+.=.|++| -+++||+|...+.|+|.|+-.+|+..
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEG-LvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEG-LVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhcc-HHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 134578887776666666789998 99999999999999999955555542
Q ss_pred --cCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcC
Q 010184 340 --SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (516)
Q Consensus 340 --~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (516)
...|-|.-.|+|+.||+||.| -+....+..+++.
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG-----------~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRG-----------IDDRGIVILMIDE 538 (1041)
T ss_pred CcceeeecccceEEecccccccC-----------CCCCceEEEEecC
Confidence 222347778999999999999 4455666766663
No 114
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=7.6e-20 Score=197.42 Aligned_cols=304 Identities=17% Similarity=0.187 Sum_probs=193.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-HhcC-------------CCEEEEEeChhhHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRIK-------------KSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~~-------------~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
-+|.+.|.+.....+... .+.++++|||+|||.+|+.-+ .+++ .++.+++|.++|+..|...|.
T Consensus 308 ~sLNrIQS~v~daAl~~~--EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfS 385 (1674)
T KOG0951|consen 308 QSLNRIQSKVYDAALRGD--ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFS 385 (1674)
T ss_pred hhhhHHHHHHHHHHhcCc--CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHH
Confidence 347777777777776654 389999999999999998765 3221 269999999999999999999
Q ss_pred HhhCCCCCcEEEEeCCccccc--cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc---hhHHH
Q 010184 90 LWSTIQDDQICRFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMFRK 164 (516)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~~--~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~---~~~~~ 164 (516)
+++..-+..|...+|+..... -...+|+|+|++..--..+.+++.. . ..-++++|+||.|.+.. +....
T Consensus 386 kRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdra--Y----~qlvrLlIIDEIHLLhDdRGpvLES 459 (1674)
T KOG0951|consen 386 KRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRA--Y----EQLVRLLIIDEIHLLHDDRGPVLES 459 (1674)
T ss_pred hhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchh--H----HHHHHHHhhhhhhhcccccchHHHH
Confidence 998777778888998855221 2458899999987743333322210 1 13457999999999943 32222
Q ss_pred ----HHh----hcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHh
Q 010184 165 ----VIS----LTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK 236 (516)
Q Consensus 165 ----~l~----~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~ 236 (516)
... .-...+.+|||||+++..+...-|.-.. +.++-. .-.-.+||+..++..-- .
T Consensus 460 IVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~-~glf~f--------------d~syRpvPL~qq~Igi~--e 522 (1674)
T KOG0951|consen 460 IVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDP-EGLFYF--------------DSSYRPVPLKQQYIGIT--E 522 (1674)
T ss_pred HHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCc-cccccc--------------CcccCcCCccceEeccc--c
Confidence 222 1123467999999987655422111000 111110 00011122221111000 0
Q ss_pred hhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----------------------------
Q 010184 237 ENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------------- 288 (516)
Q Consensus 237 ~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------------------------- 288 (516)
....++ +-.||. ...+.+++.. ....+|||+.+++..-..|+.+
T Consensus 523 k~~~~~--~qamNe---~~yeKVm~~a---gk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea 594 (1674)
T KOG0951|consen 523 KKPLKR--FQAMNE---ACYEKVLEHA---GKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEA 594 (1674)
T ss_pred CCchHH--HHHHHH---HHHHHHHHhC---CCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhh
Confidence 000000 122221 1233444433 3478999999987655555443
Q ss_pred --------------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ecCC-----CCC
Q 010184 289 --------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISSH-----AGS 345 (516)
Q Consensus 289 --------------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~~~-----~~s 345 (516)
+..+.|.+++..+|....+.|.++ .+.|+++|..++.|+|+|.-.++|- +++. ..|
T Consensus 595 ~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~els 673 (1674)
T KOG0951|consen 595 GQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELS 673 (1674)
T ss_pred hcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC-ceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCC
Confidence 234678999999999999999998 9999999999999999994444442 2221 137
Q ss_pred HHHHHHHhhcccccCC
Q 010184 346 RRQEAQRLGRILRAKG 361 (516)
Q Consensus 346 ~~~~~Qr~GR~~R~g~ 361 (516)
|.+..|++||+||...
T Consensus 674 p~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 674 PLDVMQMLGRAGRPQY 689 (1674)
T ss_pred HHHHHHHHhhcCCCcc
Confidence 8999999999999874
No 115
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.83 E-value=6.5e-20 Score=182.69 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=131.8
Q ss_pred HHHHHHHHHHhC----------CCCcccEEEecCCCcHHHHHHHHHHhc---C-----CCEEEEEeChhhHHHHHHHHHH
Q 010184 29 YQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI---K-----KSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 29 yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~i~~~---~-----~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
||.+|+.+|+.. ...++|+|+++||+|||+++++++..+ . +++|||||. .++.||..||.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 899999998654 355799999999999999999988632 1 259999999 578999999999
Q ss_pred hhCCCCCcEEEEeCCc-----cccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHH
Q 010184 91 WSTIQDDQICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~-----~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~ 163 (516)
|+......+..+.+.. ........+|+|+||+.+..... ....+.+...+|++||+||+|.+.+. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~-----~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARK-----KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TS-----THTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccc-----cccccccccccceeEEEeccccccccccccc
Confidence 9754355788888776 12234568999999999982111 12234555577999999999999754 344
Q ss_pred HHHhhcccceEEEEeccCCCCccc-hhhhHhhhCCcccc----------------------------------ccHHHHH
Q 010184 164 KVISLTKSHCKLGLTATLVREDER-ITDLNFLIGPKLYE----------------------------------ANWLDLV 208 (516)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~-~~~l~~~~gp~~~~----------------------------------~~~~~l~ 208 (516)
..+..+.+.++++|||||..++-. ...+..+++|..+. ....++
T Consensus 155 ~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~- 233 (299)
T PF00176_consen 155 KALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDV- 233 (299)
T ss_dssp HHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGG-
T ss_pred ccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhcccc-
Confidence 455558899999999999987533 22444455554432 111111
Q ss_pred hCCCcccceeEEEeccCCHHHHHHHH
Q 010184 209 KGGFIANVQCAEVWCPMTKEFFSEYL 234 (516)
Q Consensus 209 ~~g~l~~~~~~~v~~~~~~~~~~~~l 234 (516)
...+++.....+.++++++....|.
T Consensus 234 -~~~lp~~~~~~~~~~ls~~q~~~Y~ 258 (299)
T PF00176_consen 234 -EKELPPKIEHVINVELSPEQRELYN 258 (299)
T ss_dssp -CTTSTCEEEEEEEEGG-HHHHHHHH
T ss_pred -cccCCceEEEEEEeCCCHHHHHHHH
Confidence 1245566778889999998877766
No 116
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.83 E-value=1.9e-19 Score=172.83 Aligned_cols=280 Identities=18% Similarity=0.188 Sum_probs=195.5
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~ 104 (516)
+.||.|.++++..+.+. ..++++|||.||++++-.++.-..+-+|||||..+|++...-+++.. +++......-++
T Consensus 94 kfrplq~~ain~~ma~e---d~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkql-gi~as~lnanss 169 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGE---DAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQL-GIDASMLNANSS 169 (695)
T ss_pred hcChhHHHHhhhhhccC---ceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHh-CcchhhccCccc
Confidence 57999999999887765 88999999999999999998888899999999999999888778775 554433222222
Q ss_pred Ccccc--------ccCCCcEEEEchhhhhccCCCChhHHHHHHH----HccCCccEEEEccCccCCc------h---hHH
Q 010184 105 DSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEE----IRNREWGLLLMDEVHVVPA------H---MFR 163 (516)
Q Consensus 105 ~~~~~--------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~----l~~~~~~~vIlDEaH~~~~------~---~~~ 163 (516)
...-+ -......+..||+.+... ..+|.. +....+.++-+||+|+... + ...
T Consensus 170 ke~~k~v~~~i~nkdse~kliyvtpekiaks-------k~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 170 KEEAKRVEAAITNKDSEFKLIYVTPEKIAKS-------KKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred HHHHHHHHHHHcCCCceeEEEEecHHHHHHH-------HHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 11100 123467888899999774 334433 3446788999999999863 1 222
Q ss_pred HHHhhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCc-ccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFI-ANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l-~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
-+-+.++....||||||....--. +...+++ ...++ .|+- ++..+..+..|-+.+...+
T Consensus 243 ilkrqf~~~~iigltatatn~vl~--d~k~il~ie~~~tf~--------a~fnr~nl~yev~qkp~n~dd~~e------- 305 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLD--DAKDILCIEAAFTFR--------AGFNRPNLKYEVRQKPGNEDDCIE------- 305 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhh--HHHHHHhHHhhheee--------cccCCCCceeEeeeCCCChHHHHH-------
Confidence 233456777899999998753211 1222222 11111 2222 2333333444444332221
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCC
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
-+..+++.. -.|...||+|-+...++.++..|+ +..+|..+.+++|.-+-+.|..+ +
T Consensus 306 ---------------di~k~i~~~--f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-e 367 (695)
T KOG0353|consen 306 ---------------DIAKLIKGD--FAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-E 367 (695)
T ss_pred ---------------HHHHHhccc--cCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-c
Confidence 122233221 347788999999999999999993 45688889999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHH
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Q 351 (516)
+.|+|+|-+.++|||-|++..||..+- ++|...|.|
T Consensus 368 iqvivatvafgmgidkpdvrfvihhsl-~ksienyyq 403 (695)
T KOG0353|consen 368 IQVIVATVAFGMGIDKPDVRFVIHHSL-PKSIENYYQ 403 (695)
T ss_pred eEEEEEEeeecccCCCCCeeEEEeccc-chhHHHHHH
Confidence 999999999999999999999999754 469999999
No 117
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=6.7e-19 Score=190.70 Aligned_cols=115 Identities=22% Similarity=0.192 Sum_probs=93.6
Q ss_pred chHHHHHHHH-HHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 251 NKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 251 ~k~~~~~~ll-~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
.|+.++..-+ ..| ..|..+||||+++...+.++..|. ..++||...+.||..+.+.|+.| .|+|||+++
T Consensus 428 ~k~~av~~~i~~~~--~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G---~VtIATNmA 502 (896)
T PRK13104 428 DKFQAIIEDVRECG--VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG---AVTIATNMA 502 (896)
T ss_pred HHHHHHHHHHHHHH--hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC---cEEEeccCc
Confidence 4666555444 445 589999999999999999999993 45799999999999999999998 599999999
Q ss_pred ccccccccc------------------------------------C--EEEEecCCCCCHHHHHHHhhcccccCCCcccc
Q 010184 325 DNSIDIPEA------------------------------------N--VIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366 (516)
Q Consensus 325 ~~GlDlp~a------------------------------------~--~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~ 366 (516)
++|+|+.-- . +||-...| .|++...|-.||+||-|.
T Consensus 503 GRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerh-esrRID~QLrGRaGRQGD----- 576 (896)
T PRK13104 503 GRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERH-ESRRIDNQLRGRAGRQGD----- 576 (896)
T ss_pred cCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccC-chHHHHHHhccccccCCC-----
Confidence 999999732 1 56665566 499999999999999995
Q ss_pred ccCCCCceeEEEEEE
Q 010184 367 MAGGKEEYNAFFYSL 381 (516)
Q Consensus 367 ~~~~~~~~~~~~y~l 381 (516)
.|...||.+|
T Consensus 577 -----PGss~f~lSl 586 (896)
T PRK13104 577 -----PGSSRFYLSL 586 (896)
T ss_pred -----CCceEEEEEc
Confidence 5556666655
No 118
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.82 E-value=3.8e-19 Score=191.62 Aligned_cols=321 Identities=17% Similarity=0.176 Sum_probs=189.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
..+++-|.-+.-.+ .. +.|..+.||.|||+++..++ +..++.+-|++|+-.|+.|-.+.+..++..-+..|+
T Consensus 79 ~~~~dvQlig~l~l-~~----G~iaEm~TGEGKTLvA~l~a~l~al~G~~v~vvT~neyLA~Rd~e~~~~~~~~LGl~vg 153 (796)
T PRK12906 79 LRPFDVQIIGGIVL-HE----GNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVG 153 (796)
T ss_pred CCCchhHHHHHHHH-hc----CCcccccCCCCCcHHHHHHHHHHHHcCCCeEEEeccHHHHHhhHHHHHHHHHhcCCeEE
Confidence 44566677665544 22 33888999999999988765 345789999999999999977777776655556788
Q ss_pred EEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----------------
Q 010184 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----------------- 160 (516)
Q Consensus 101 ~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----------------- 160 (516)
..+++.... -.-.++|+-+|...+....-|.+.... .+..-.+.+.+.|+||++.+.-.
T Consensus 154 ~i~~~~~~~~r~~~y~~dI~Y~t~~e~gfDyLRD~m~~~-~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~~~~~~~ 232 (796)
T PRK12906 154 LNLNSMSPDEKRAAYNCDITYSTNSELGFDYLRDNMVVY-KEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATD 232 (796)
T ss_pred EeCCCCCHHHHHHHhcCCCeecCCccccccchhhccccc-hhhhhccCcceeeeccchheeeccCCCceecCCCCCcchH
Confidence 887764322 123588999998888765444321111 12222467889999999986511
Q ss_pred hHH---HHHhhccc-------------ce-------EEEEeccCCCCccchhhhHhhhC-Ccccccc---HHHHHhC---
Q 010184 161 MFR---KVISLTKS-------------HC-------KLGLTATLVREDERITDLNFLIG-PKLYEAN---WLDLVKG--- 210 (516)
Q Consensus 161 ~~~---~~l~~~~~-------------~~-------~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~---~~~l~~~--- 210 (516)
.|. ++...+.. ++ .+.||..- ...+..+++ +.+|... +...+..
T Consensus 233 ~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G------~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 233 LYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQG------IRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred HHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHH------HHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 122 12222111 11 12222110 001111111 1111110 1111100
Q ss_pred ---------CCcc-cceeEEEec----cC--------------------------------CHHHHHHHHHhh------h
Q 010184 211 ---------GFIA-NVQCAEVWC----PM--------------------------------TKEFFSEYLKKE------N 238 (516)
Q Consensus 211 ---------g~l~-~~~~~~v~~----~~--------------------------------~~~~~~~~l~~~------~ 238 (516)
-|+. +-++..+.- .| ...+++.|.+-. .
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 0111 000000000 00 011222222000 0
Q ss_pred h-H--HHH----------------------HHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC----
Q 010184 239 S-K--KKQ----------------------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---- 289 (516)
Q Consensus 239 ~-~--~~~----------------------~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~---- 289 (516)
. . ... .++.....|+.++...+.... ..+..+||||+++...+.++..|.
T Consensus 387 ~e~~Ef~~iY~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~~gi 465 (796)
T PRK12906 387 TEEEEFREIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDEAGI 465 (796)
T ss_pred HHHHHHHHHhCCCEEEcCCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHCCC
Confidence 0 0 000 001112246666665554332 578999999999999999999992
Q ss_pred -CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccccc---ccC-----EEEEecCCCCCHHHHHHHhhcccccC
Q 010184 290 -KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP---EAN-----VIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 290 -~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp---~a~-----~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
...+||+....|+..+.+.++.+ .|+|+|+++|+|+|++ ++. +||.+..|- |++.+.|+.||+||.|
T Consensus 466 ~~~~Lna~~~~~Ea~ii~~ag~~g---~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pe-s~ri~~Ql~GRtGRqG 541 (796)
T PRK12906 466 PHAVLNAKNHAKEAEIIMNAGQRG---AVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHE-SRRIDNQLRGRSGRQG 541 (796)
T ss_pred CeeEecCCcHHHHHHHHHhcCCCc---eEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCC-cHHHHHHHhhhhccCC
Confidence 45789999888888888777776 5999999999999995 777 899987664 9999999999999999
Q ss_pred C
Q 010184 361 G 361 (516)
Q Consensus 361 ~ 361 (516)
.
T Consensus 542 ~ 542 (796)
T PRK12906 542 D 542 (796)
T ss_pred C
Confidence 5
No 119
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.3e-18 Score=188.37 Aligned_cols=330 Identities=18% Similarity=0.192 Sum_probs=194.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
..+++-|.-+.-.+ .. +.|..+.||+|||+++..++. ..++.+-|++|+..|+.|-.+.+..++..-+..++
T Consensus 80 ~~~~dvQlig~l~L-~~----G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~ 154 (830)
T PRK12904 80 MRHFDVQLIGGMVL-HE----GKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVG 154 (830)
T ss_pred CCCCccHHHhhHHh-cC----CchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 34555576665533 22 348889999999999887663 23678999999999999988888877666666788
Q ss_pred EEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----------------
Q 010184 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----------------- 160 (516)
Q Consensus 101 ~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----------------- 160 (516)
...++.... ..-.++|+++|+..+....-|..... ..+.+..+.+.++|+|||+.+.-.
T Consensus 155 ~i~~~~~~~er~~~y~~dI~ygT~~elgfDyLrd~~~~-~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~ 233 (830)
T PRK12904 155 VILSGMSPEERREAYAADITYGTNNEFGFDYLRDNMVF-SLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSE 233 (830)
T ss_pred EEcCCCCHHHHHHhcCCCeEEECCcchhhhhhhccccc-chhhhcccccceEEEechhhheeccCCCceeeECCCCcccH
Confidence 888764321 11248999999998854322221100 012223467789999999987521
Q ss_pred hHH---HHHhhccc--c-------eEEEEeccCCCCccchhhhHhhhC-Ccccccc---HHHHHhC------------CC
Q 010184 161 MFR---KVISLTKS--H-------CKLGLTATLVREDERITDLNFLIG-PKLYEAN---WLDLVKG------------GF 212 (516)
Q Consensus 161 ~~~---~~l~~~~~--~-------~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~---~~~l~~~------------g~ 212 (516)
.|. .+...+.. + +.+.||..-. ..+..+++ +.+|... +...+.. -|
T Consensus 234 ~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~------~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 234 LYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGI------EKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred HHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHH------HHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 122 22222211 1 2233332211 01111111 1111110 0111100 01
Q ss_pred ccc-ceeEEEeccC-------------------------------------CHHHHHHHHHhh------hhHH---H---
Q 010184 213 IAN-VQCAEVWCPM-------------------------------------TKEFFSEYLKKE------NSKK---K--- 242 (516)
Q Consensus 213 l~~-~~~~~v~~~~-------------------------------------~~~~~~~~l~~~------~~~~---~--- 242 (516)
+.. -++..+. .. ...+++.|.+-. .+.. .
T Consensus 308 iV~dg~V~ivD-e~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY 386 (830)
T PRK12904 308 IVKDGEVVIVD-EFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIY 386 (830)
T ss_pred EEECCEEEEEE-CCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHh
Confidence 110 0000000 00 011222222000 0000 0
Q ss_pred -------------------HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCC
Q 010184 243 -------------------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATS 298 (516)
Q Consensus 243 -------------------~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~ 298 (516)
..++.....|+.++...+.... ..|..+||||+++..++.++..|. ...+||.
T Consensus 387 ~l~vv~IPtnkp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak-- 463 (830)
T PRK12904 387 NLDVVVIPTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK-- 463 (830)
T ss_pred CCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--
Confidence 0011123357777777775433 568899999999999999999993 3468885
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCCccccccccc-------------------------------------C-EEEEec
Q 010184 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA-------------------------------------N-VIIQIS 340 (516)
Q Consensus 299 ~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a-------------------------------------~-~vI~~~ 340 (516)
+.+|.+.+..|..+ +..|+|||+++++|+|++-- . +||...
T Consensus 464 q~eREa~Iia~Ag~-~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe 542 (830)
T PRK12904 464 NHEREAEIIAQAGR-PGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE 542 (830)
T ss_pred hHHHHHHHHHhcCC-CceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc
Confidence 77999999999997 99999999999999999864 2 566555
Q ss_pred CCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEE
Q 010184 341 SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSL 381 (516)
Q Consensus 341 ~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~l 381 (516)
.| .|++..-|..||+||-|. .|...|+.+|
T Consensus 543 rh-esrRid~QlrGRagRQGd----------pGss~f~lSl 572 (830)
T PRK12904 543 RH-ESRRIDNQLRGRSGRQGD----------PGSSRFYLSL 572 (830)
T ss_pred cC-chHHHHHHhhcccccCCC----------CCceeEEEEc
Confidence 55 499999999999999995 5555665555
No 120
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.81 E-value=7.3e-19 Score=193.99 Aligned_cols=319 Identities=18% Similarity=0.129 Sum_probs=189.9
Q ss_pred CCCHHHHHHHHHHHhCCCCc-ccEEEecCCCcHHHHHHHHHHh-------cCCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 25 QPRPYQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACR-------IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~-------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
..+++|.++++......... .+++.+|||+|||.+++.++.. ...+++.+.|.++++++..+.+..+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45899999999888765444 7899999999999998876632 246899999999999999999998876543
Q ss_pred CcEEEEeCCccccccCCC-c---EEEEchhhhhcc----------------CCCChhHHHHHHHHccCCccEEEEccCcc
Q 010184 97 DQICRFTSDSKERFRGNA-G---VVVTTYNMVAFG----------------GKRSEESEKIIEEIRNREWGLLLMDEVHV 156 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~-~---IvV~T~~~l~~~----------------~~r~~~~~~~~~~l~~~~~~~vIlDEaH~ 156 (516)
......++.....+.... . +.++|++..... ..... ... +.. .-.+++|+||+|.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~---l~~S~vIlDE~h~ 349 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFK-FEF-LAL---LLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccc-hHH-HHH---HHhhchhhccHHh
Confidence 322213443332221111 1 333333333222 11111 111 111 2246899999999
Q ss_pred CCch-hHHHHHh---hcc--cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHH
Q 010184 157 VPAH-MFRKVIS---LTK--SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (516)
Q Consensus 157 ~~~~-~~~~~l~---~~~--~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~ 230 (516)
+... +...++. .+. ...+|++|||++..... .+...+++......... ........ .......
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~--~l~~~~~~~~~~~~~~~-----~~~~~~e~----~~~~~~~ 418 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLKE--KLKKALGKGREVVENAK-----FCPKEDEP----GLKRKER 418 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHH--HHHHHHhcccceecccc-----cccccccc----ccccccc
Confidence 9877 4333222 221 34589999999743222 22233322211110000 00000000 0000000
Q ss_pred HHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHH
Q 010184 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKI 305 (516)
Q Consensus 231 ~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~ 305 (516)
.... . .+. ......+.... ..+.+++|.||++..+.+++..|+ +..+||.+...+|.+.
T Consensus 419 ~~~~----~---------~~~--~~~~~~~~~~~-~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~k 482 (733)
T COG1203 419 VDVE----D---------GPQ--EELIELISEEV-KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEK 482 (733)
T ss_pred hhhh----h---------hhh--Hhhhhcchhhh-ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHH
Confidence 0000 0 000 01111121222 568999999999999999999993 4578999999999888
Q ss_pred HHHHhc---CCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEE
Q 010184 306 LQAFKC---SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382 (516)
Q Consensus 306 l~~F~~---~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv 382 (516)
++.+.+ .....|+|+|++.+.|+|+ +.+++|.--+ .....+||.||++|.|.. .+..+++|...
T Consensus 483 e~~l~~~~~~~~~~IvVaTQVIEagvDi-dfd~mITe~a---PidSLIQR~GRv~R~g~~---------~~~~~~v~~~~ 549 (733)
T COG1203 483 ERELKKLFKQNEGFIVVATQVIEAGVDI-DFDVLITELA---PIDSLIQRAGRVNRHGKK---------ENGKIYVYNDE 549 (733)
T ss_pred HHHHHHHHhccCCeEEEEeeEEEEEecc-ccCeeeecCC---CHHHHHHHHHHHhhcccc---------cCCceeEeecc
Confidence 775542 2378899999999999999 5999996433 566789999999999932 23445555554
Q ss_pred cCCchh
Q 010184 383 STDTQE 388 (516)
Q Consensus 383 ~~~t~e 388 (516)
......
T Consensus 550 ~~~~~~ 555 (733)
T COG1203 550 ERGPYL 555 (733)
T ss_pred cCCCch
Confidence 444433
No 121
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.79 E-value=1.1e-16 Score=174.44 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=84.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
..+.++||||++...++.+++.|. +.++||++++.+|..+++.|+.+ .+.++|+|+++++|+|+|++++||+++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHHhCCccccCCcEEEEeC
Confidence 468899999999999999999993 45689999999999999999997 899999999999999999999999886
Q ss_pred CC----CCCHHHHHHHhhcccccC
Q 010184 341 SH----AGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~~----~~s~~~~~Qr~GR~~R~g 360 (516)
.. +.+...|+||+||++|..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~~ 546 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARNV 546 (652)
T ss_pred CcccccCCCHHHHHHHhccccCCC
Confidence 42 358999999999999964
No 122
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.79 E-value=2.5e-18 Score=183.03 Aligned_cols=310 Identities=18% Similarity=0.197 Sum_probs=192.9
Q ss_pred CCCCHHHHHHHH--HHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLS--KMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~--~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..+++||.+++. .+++. ++.|..+||++|||+++-.++.+ .++.++.+.|-.+.+..-...+..++.-.+.
T Consensus 222 ~~~fewq~ecls~~~~~e~---~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLER---KNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHHhcchhhhcc---cceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 467888888876 33433 49999999999999998776543 3578999999887666666666666533344
Q ss_pred cEEEEeCCc-cccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-------
Q 010184 98 QICRFTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT------- 169 (516)
Q Consensus 98 ~v~~~~~~~-~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~------- 169 (516)
.|..|.|.. .........+.|+|.++-.... ...++.=+....|+||+||.|.+........+..+
T Consensus 299 ~ve~y~g~~~p~~~~k~~sv~i~tiEkansli------n~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 299 PVEEYAGRFPPEKRRKRESVAIATIEKANSLI------NSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cchhhcccCCCCCcccceeeeeeehHhhHhHH------HHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 555555442 2222345789999999876543 33344433466799999999999875322222211
Q ss_pred -cc--ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCC--HHH-HHHHHHhhhhHHHH
Q 010184 170 -KS--HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMT--KEF-FSEYLKKENSKKKQ 243 (516)
Q Consensus 170 -~~--~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~--~~~-~~~~l~~~~~~~~~ 243 (516)
.. -+.+|||||..+.... .+++...+|..... |+...+...+-+ .+- ..+.++........
T Consensus 373 ~~~~~~~iIGMSATi~N~~lL----~~~L~A~~y~t~fR---------Pv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~ 439 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPNNSLL----QDWLDAFVYTTRFR---------PVPLKEYIKPGSLIYESSRNKVLREIANLYSS 439 (1008)
T ss_pred ccccceeEeeeecccCChHHH----HHHhhhhheecccC---------cccchhccCCCcccccchhhHHHHHhhhhhhh
Confidence 12 2479999999865543 33443333332111 111111000000 000 11111000000001
Q ss_pred HHhhhCcch-HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----------------------------------
Q 010184 244 ALYVMNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------------------- 288 (516)
Q Consensus 244 ~l~~~~~~k-~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------------------------------- 288 (516)
..-..+|+- ...|...+ ..+.++||||.++.-++.+|..+
T Consensus 440 ~~g~~dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld 514 (1008)
T KOG0950|consen 440 NLGDEDPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILD 514 (1008)
T ss_pred hcccCCCcceeeehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccc
Confidence 111122211 12333333 45678999999988877776444
Q ss_pred ---------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe---cCCCCCHHHHHHHhhcc
Q 010184 289 ---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI---SSHAGSRRQEAQRLGRI 356 (516)
Q Consensus 289 ---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~---~~~~~s~~~~~Qr~GR~ 356 (516)
+++++|.++..++|..+...|+++ .+.|+++|+.+..|+|+|.-.++|-. ...+.+.-+|.|++||+
T Consensus 515 ~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g-~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRA 593 (1008)
T KOG0950|consen 515 PVLAKTIPYGVAYHHAGLTSEEREIIEAAFREG-NIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRA 593 (1008)
T ss_pred hHHheeccccceecccccccchHHHHHHHHHhc-CeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhh
Confidence 245788899999999999999998 99999999999999999977777754 22334678899999999
Q ss_pred cccCC
Q 010184 357 LRAKG 361 (516)
Q Consensus 357 ~R~g~ 361 (516)
||.|-
T Consensus 594 GR~gi 598 (1008)
T KOG0950|consen 594 GRTGI 598 (1008)
T ss_pred hhccc
Confidence 99984
No 123
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.74 E-value=1.7e-16 Score=171.74 Aligned_cols=116 Identities=20% Similarity=0.199 Sum_probs=93.3
Q ss_pred chHHHHHHHH-HHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 251 NKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 251 ~k~~~~~~ll-~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
.|+.++..-+ ..| ..|..+||||.++...+.++..|. ..++|++.++.||..+.+.|+.| . |+|||+++
T Consensus 433 ~K~~Aii~ei~~~~--~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G-~--VtIATnmA 507 (908)
T PRK13107 433 EKYQAIIKDIKDCR--ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG-A--VTIATNMA 507 (908)
T ss_pred HHHHHHHHHHHHHH--HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC-c--EEEecCCc
Confidence 4665544444 455 579999999999999999999993 45799999999999999999998 3 99999999
Q ss_pred ccccccccc-----------------------------------C--EEEEecCCCCCHHHHHHHhhcccccCCCccccc
Q 010184 325 DNSIDIPEA-----------------------------------N--VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367 (516)
Q Consensus 325 ~~GlDlp~a-----------------------------------~--~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~ 367 (516)
++|+|+.-- . +||-...| .|++...|..||+||-|.
T Consensus 508 GRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerh-eSrRID~QLrGRaGRQGD------ 580 (908)
T PRK13107 508 GRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERH-ESRRIDNQLRGRAGRQGD------ 580 (908)
T ss_pred CCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccC-chHHHHhhhhcccccCCC------
Confidence 999999732 1 56665566 499999999999999995
Q ss_pred cCCCCceeEEEEEEE
Q 010184 368 AGGKEEYNAFFYSLV 382 (516)
Q Consensus 368 ~~~~~~~~~~~y~lv 382 (516)
.|...||.+|-
T Consensus 581 ----PGss~f~lSlE 591 (908)
T PRK13107 581 ----AGSSRFYLSME 591 (908)
T ss_pred ----CCceeEEEEeC
Confidence 56666666653
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.73 E-value=2.9e-16 Score=168.75 Aligned_cols=310 Identities=17% Similarity=0.161 Sum_probs=180.6
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
...|.+-|..+++.+... +.....++.+.||+|||-+++.++.. .++.+|||+|-.+|..|..+.|+..|+ ..
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~ 272 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG---AK 272 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC---CC
Confidence 457889999999988776 34568899999999999999988755 468999999999999999999999887 36
Q ss_pred EEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---------
Q 010184 99 ICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------- 160 (516)
Q Consensus 99 v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--------- 160 (516)
|.+++++..+. ..++..|||.|.+.+ +-.+ .+.|+||+||-|...-+
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAl-------------F~Pf--~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSAL-------------FLPF--KNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhh-------------cCch--hhccEEEEeccccccccCCcCCCcCH
Confidence 77877764422 248899999998765 2222 67899999999986532
Q ss_pred -hHHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhC---CCcccceeEEEecc-------CCHHH
Q 010184 161 -MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG---GFIANVQCAEVWCP-------MTKEF 229 (516)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~---g~l~~~~~~~v~~~-------~~~~~ 229 (516)
...-.........+|+=||||.-+.-. +..-|... ...+..+ -..+++....+.-. +++..
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES~~----~~~~g~y~----~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~L 409 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLESYA----NAESGKYK----LLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPAL 409 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHHHH----hhhcCceE----EEEccccccccCCCcceEEeccccccccCccCCHHH
Confidence 111111222233456669999632110 11111100 0001100 01222222211111 33333
Q ss_pred HHHHHHhhhhHHHHHHhhhC---------------cchHHHHHHHHHHHhh--------------------cCCCeEEEE
Q 010184 230 FSEYLKKENSKKKQALYVMN---------------PNKFRACEFLIRFHEQ--------------------QRGDKIIVF 274 (516)
Q Consensus 230 ~~~~l~~~~~~~~~~l~~~~---------------~~k~~~~~~ll~~~~~--------------------~~~~k~iVF 274 (516)
.+... ....+.++.+...| ..+..-|+.-+.+|.. .-|...|++
T Consensus 410 l~~i~-~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 410 LEAIR-KTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRA 488 (730)
T ss_pred HHHHH-HHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence 33322 11111111111000 0111112222222220 001111222
Q ss_pred e-ccH-HHHHHHHHHh---CCceEecCCCHH--HHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCC-----
Q 010184 275 A-DNL-FALTEYAMKL---RKPMIYGATSHV--ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH----- 342 (516)
Q Consensus 275 ~-~~~-~~~~~l~~~L---~~~~i~g~~~~~--eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~----- 342 (516)
+ .-+ ...+++...+ .+..+++++... .-..++..|.++ +.+|||.|+++..|.|+|++..|.+++.+
T Consensus 489 ~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 489 VGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred ecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 1 112 2233444444 244577776543 345679999998 99999999999999999999977665322
Q ss_pred --CCC----HHHHHHHhhcccccC
Q 010184 343 --AGS----RRQEAQRLGRILRAK 360 (516)
Q Consensus 343 --~~s----~~~~~Qr~GR~~R~g 360 (516)
+++ .+.+.|..||+||.+
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~ 591 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAG 591 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCC
Confidence 222 344699999999986
No 125
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.73 E-value=3.1e-17 Score=154.05 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH-h-------cCCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R-------IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~-------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..|+++|.++++.++.+ ++.++++|||+|||++++.++. . .+.+++|++|+++|+.|+...+..+....
T Consensus 20 ~~~~~~Q~~~~~~~~~~---~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 20 EKPTPIQARAIPPLLSG---RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCCHHHHHHHHHHhcC---CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 46999999999998874 4899999999999998765542 1 23469999999999999999999987655
Q ss_pred CCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHH
Q 010184 96 DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVI 166 (516)
Q Consensus 96 ~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l 166 (516)
+..+..++|+... .+.+..+|+|+|++.+.....+.. +.-..++++|+||+|++.+..+. .++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--------~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--------LDLSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--------CChhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 6667777776442 123478999999988755432211 11245789999999998765433 333
Q ss_pred hhcc-cceEEEEeccCCC
Q 010184 167 SLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 167 ~~~~-~~~~l~LTATp~~ 183 (516)
..+. ..+.+++||||.+
T Consensus 169 ~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 169 KLLPKDRQTLLFSATMPK 186 (203)
T ss_pred HhCCcccEEEEEeccCCH
Confidence 4444 4678999999984
No 126
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.72 E-value=6.4e-17 Score=148.19 Aligned_cols=262 Identities=16% Similarity=0.201 Sum_probs=169.6
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC------CCEEEEEeChhhHHHHHHHHHHhhC-CCCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK------KSCLCLATNAVSVDQWAFQFKLWST-IQDD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~------~~~Lvl~P~~~L~~Qw~~e~~~~~~-~~~~ 97 (516)
.+.+.|.++++..+-+- +.+-.+..|.|||-+.+....+.- ..+||+|.+++|+.|+..|+.+|.. +|..
T Consensus 64 hpsevqhecipqailgm---dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~v 140 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSV 140 (387)
T ss_pred CchHhhhhhhhHHhhcc---hhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCc
Confidence 35667888888665443 667778999999988766543321 3699999999999999999888764 5677
Q ss_pred cEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHH---HHh
Q 010184 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRK---VIS 167 (516)
Q Consensus 98 ~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~---~l~ 167 (516)
++.+|-|+..- .+.+-++|+|+||+.+....+. ..+.-......|+|||+.+... +++. +.+
T Consensus 141 kvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~--------k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr 212 (387)
T KOG0329|consen 141 KVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRN--------RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFR 212 (387)
T ss_pred eEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHh--------ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhh
Confidence 89999887532 2446789999999988664321 1222355678999999988754 3333 333
Q ss_pred hcc-cceEEEEeccCCCCccchhhhHhhhCCc-cccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHH
Q 010184 168 LTK-SHCKLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~~~gp~-~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l 245 (516)
..+ ..++..+|||...+-...-. .++-.|. +|-.+.. .++-.....|. +
T Consensus 213 ~tp~~KQvmmfsatlskeiRpvC~-kFmQdPmEi~vDdE~------------------KLtLHGLqQ~Y----------v 263 (387)
T KOG0329|consen 213 MTPHEKQVMMFSATLSKEIRPVCH-KFMQDPMEIFVDDEA------------------KLTLHGLQQYY----------V 263 (387)
T ss_pred cCcccceeeeeeeecchhhHHHHH-hhhcCchhhhccchh------------------hhhhhhHHHHH----------H
Confidence 222 34568889998753221000 0000110 0000000 01111111111 1
Q ss_pred hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 246 ~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
......|.+.+..|++.++ -..++||+.++..+. |+. + +++|++.+
T Consensus 264 kLke~eKNrkl~dLLd~Le---FNQVvIFvKsv~Rl~--------------------------f~k----r-~vat~lfg 309 (387)
T KOG0329|consen 264 KLKENEKNRKLNDLLDVLE---FNQVVIFVKSVQRLS--------------------------FQK----R-LVATDLFG 309 (387)
T ss_pred hhhhhhhhhhhhhhhhhhh---hcceeEeeehhhhhh--------------------------hhh----h-hHHhhhhc
Confidence 1222234455666776665 567999998876511 322 3 88999999
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|+|+-.+|.++.|+-+ .++..|.+|+||++|.|.
T Consensus 310 rgmdiervNi~~NYdmp-~~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 310 RGMDIERVNIVFNYDMP-EDSDTYLHRVARAGRFGT 344 (387)
T ss_pred cccCcccceeeeccCCC-CCchHHHHHhhhhhcccc
Confidence 99999999999999766 489999999999999994
No 127
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.72 E-value=4.6e-16 Score=175.07 Aligned_cols=328 Identities=17% Similarity=0.136 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHHH----hC---CCCcccEEEecCCCcHHHHHHHHHHhcC-----CCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 26 PRPYQEKSLSKMF----GN---GRARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 26 Lr~yQ~~al~~~~----~~---~~~~~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.+.+|..+++... .. +..+.|+|++-+|||||++++.++..+. ..+++||.++.|-.|..++|..+..
T Consensus 249 ~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~ 328 (962)
T COG0610 249 QRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGK 328 (962)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHH
Confidence 3445666665322 11 3346899999999999999998775542 4699999999999999999999853
Q ss_pred CCCCcEEEEeC-Ccccccc-CCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHH-Hhhcc
Q 010184 94 IQDDQICRFTS-DSKERFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV-ISLTK 170 (516)
Q Consensus 94 ~~~~~v~~~~~-~~~~~~~-~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~-l~~~~ 170 (516)
.........+. ..++.+. +...|+|||.+.+....... .......+.-+||+||||+.-.....+. -..++
T Consensus 329 ~~~~~~~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~------~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~ 402 (962)
T COG0610 329 VAFNDPKAESTSELKELLEDGKGKIIVTTIQKFNKAVKED------ELELLKRKNVVVIIDEAHRSQYGELAKLLKKALK 402 (962)
T ss_pred hhhhcccccCHHHHHHHHhcCCCcEEEEEecccchhhhcc------cccccCCCcEEEEEechhhccccHHHHHHHHHhc
Confidence 32211100111 1111122 34689999999997653211 0111235555999999999876544443 34455
Q ss_pred cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEE-eccCCHHHHH-------HHHHhh-----
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV-WCPMTKEFFS-------EYLKKE----- 237 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v-~~~~~~~~~~-------~~l~~~----- 237 (516)
....+|+||||....+.. .-...+|..++.+...+.++.|.+.++.+... ..+...+... +.....
T Consensus 403 ~a~~~gFTGTPi~~~d~~-tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (962)
T COG0610 403 KAIFIGFTGTPIFKEDKD-TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDIL 481 (962)
T ss_pred cceEEEeeCCcccccccc-chhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHH
Confidence 678899999999776653 23567899999999999999998876665543 3333221111 111000
Q ss_pred -----hhHHHHHHhhhCcchHHHHHHHHHHHh--hcCCCeEEEEeccHHHHHHHHHHhC---------------------
Q 010184 238 -----NSKKKQALYVMNPNKFRACEFLIRFHE--QQRGDKIIVFADNLFALTEYAMKLR--------------------- 289 (516)
Q Consensus 238 -----~~~~~~~l~~~~~~k~~~~~~ll~~~~--~~~~~k~iVF~~~~~~~~~l~~~L~--------------------- 289 (516)
.......+........+++..+.+... ...+.|+++.+.+...+..+++...
T Consensus 482 ~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 561 (962)
T COG0610 482 EKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNT 561 (962)
T ss_pred HHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHh
Confidence 000001111122223344445543332 2456788888777774444443321
Q ss_pred CceEecC------CCHHHHHHHHHHH-hcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCC
Q 010184 290 KPMIYGA------TSHVERTKILQAF-KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362 (516)
Q Consensus 290 ~~~i~g~------~~~~eR~~~l~~F-~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~ 362 (516)
..-.... .....+.....+| ...+..++||.++++-+|+|.|.++++.+.- +. -....+|++.|+.|+.++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK-~L-k~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 562 EFETDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK-PL-KYHNLIQAISRTNRVFPG 639 (962)
T ss_pred hcccchhhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEecc-cc-ccchHHHHHHHhccCCCC
Confidence 0000011 1222334455554 4446899999999999999999999999863 33 566789999999999976
No 128
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.71 E-value=1e-16 Score=145.76 Aligned_cols=145 Identities=18% Similarity=0.264 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
.|+|.++++.+.++ ++.++.+|||+|||++++.++.. + ...+++++|+++|+.|..+++..++......+..
T Consensus 1 t~~Q~~~~~~i~~~---~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISG---KNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTT---SEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcC---CCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 48999999998854 38999999999999999876633 2 2389999999999999999999998766667888
Q ss_pred EeCCcccc------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhc--
Q 010184 102 FTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT-- 169 (516)
Q Consensus 102 ~~~~~~~~------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~-- 169 (516)
++++.... +.++++|+|+|++++....... .+.-...++||+||+|.+... .+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~--------~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNG--------KINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTT--------SSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccCcchhhcccccc--------ccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 77765421 2357999999999986542210 001134899999999999874 344445544
Q ss_pred -ccceEEEEeccCC
Q 010184 170 -KSHCKLGLTATLV 182 (516)
Q Consensus 170 -~~~~~l~LTATp~ 182 (516)
...+.+++||||.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 2356899999997
No 129
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.69 E-value=3.1e-15 Score=158.89 Aligned_cols=151 Identities=19% Similarity=0.207 Sum_probs=103.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCC-C
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD-D 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~-~ 97 (516)
+.+-.||.+-+...=.+. +.+|++||.+|||++..-++.+. .+-+++++|+++|+.|........++.+. .
T Consensus 510 F~Pd~WQ~elLDsvDr~e---SavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNE---SAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhccc---ceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 557779999988544443 99999999999999998888654 25799999999999999888776542221 1
Q ss_pred cEEEEeCCccccc---cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc
Q 010184 98 QICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK 170 (516)
Q Consensus 98 ~v~~~~~~~~~~~---~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~ 170 (516)
.....-|...+.+ +-.++|+||-++.+-..+-.... ...+. .+..++|+||+|.+++. .+..++..++
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~---~q~~c--erIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPH---HQKFC--ERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchh---hhhhh--hcceEEEechhhhccccccchHHHHHHHhcC
Confidence 1111122222212 23689999999888654332111 12222 45689999999999975 5666666665
Q ss_pred cceEEEEeccCCC
Q 010184 171 SHCKLGLTATLVR 183 (516)
Q Consensus 171 ~~~~l~LTATp~~ 183 (516)
.+ .|+||||..+
T Consensus 662 CP-~L~LSATigN 673 (1330)
T KOG0949|consen 662 CP-FLVLSATIGN 673 (1330)
T ss_pred CC-eeEEecccCC
Confidence 55 7999999754
No 130
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.67 E-value=2.2e-17 Score=174.76 Aligned_cols=289 Identities=18% Similarity=0.266 Sum_probs=191.1
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
...|.+||.++++++... ..+..+|+++++|.|||.+++.+...+ +++.|+++|..+ +..|..+|..|. +
T Consensus 293 ~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT-~~nwe~e~~~wa--p 369 (696)
T KOG0383|consen 293 GGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLST-IVNWEREFELWA--P 369 (696)
T ss_pred CccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCcc-ccCCCCchhccC--C
Confidence 367899999999976432 234589999999999999988766443 468999999998 667999999994 3
Q ss_pred CCcEEEEeCCcccc---------------------------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccE
Q 010184 96 DDQICRFTSDSKER---------------------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGL 148 (516)
Q Consensus 96 ~~~v~~~~~~~~~~---------------------------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~ 148 (516)
...|..+.|..+.+ -.-...+..++|++.... ...+....|++
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~----------~~il~~v~w~~ 439 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID----------QSILFSVQWGL 439 (696)
T ss_pred CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC----------HHHHhhhhcce
Confidence 33444444432211 012356667777766443 22334578999
Q ss_pred EEEccCccCCch--hHHHHHhhcccceEEEEeccCCCCccchh-hhHh-------------------------------h
Q 010184 149 LLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNF-------------------------------L 194 (516)
Q Consensus 149 vIlDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~-------------------------------~ 194 (516)
+|+||+|+++++ .+.+.+...+..++++||+||.+++-.+. .+.. +
T Consensus 440 livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l 519 (696)
T KOG0383|consen 440 LIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLL 519 (696)
T ss_pred eEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccc
Confidence 999999999986 55567777788899999999988653321 2222 2
Q ss_pred hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHH---HHhhhh------------------HHH-----------
Q 010184 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY---LKKENS------------------KKK----------- 242 (516)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~---l~~~~~------------------~~~----------- 242 (516)
.+|...++-..+..+. ........+.+.+++-+.+.| +.++-. ++.
T Consensus 520 ~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e 597 (696)
T KOG0383|consen 520 LCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEE 597 (696)
T ss_pred cCchhhhhhhhhhccC--CCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCcccc
Confidence 2222222222232221 222233334444554332222 211100 000
Q ss_pred ---------HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC----CceEecCCCHHHHHHHHHHH
Q 010184 243 ---------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQAF 309 (516)
Q Consensus 243 ---------~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~----~~~i~g~~~~~eR~~~l~~F 309 (516)
..-.....+|+..+...+.... ..|+|+++|++.+..++.+...+. ...++|.....+|+..+++|
T Consensus 598 ~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~-~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~ 676 (696)
T KOG0383|consen 598 PLEENGEYLGSALIKASGKLTLLLKMLKKLK-SSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRF 676 (696)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhcccc
Confidence 0001224567777888887766 889999999999999999999994 56899999999999999999
Q ss_pred hcCC--CccEEEEeCCCccc
Q 010184 310 KCSR--DLNTIFLSKVGDNS 327 (516)
Q Consensus 310 ~~~~--~~~vLv~t~~~~~G 327 (516)
+..+ .+-+|.+|+++|.|
T Consensus 677 n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 677 NAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CCCCccceEEEeecccccCC
Confidence 9763 44467779999887
No 131
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=4.4e-16 Score=136.05 Aligned_cols=128 Identities=22% Similarity=0.249 Sum_probs=96.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc-----ccCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-----FRGNA 114 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 114 (516)
++++.+|||+|||.+++.++... .++++|++|++.++.||.+.+..+... ...+..+.+..... .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 67999999999999999887554 278999999999999999999998653 44566666654432 14578
Q ss_pred cEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH-----HHhhcccceEEEEeccC
Q 010184 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-----VISLTKSHCKLGLTATL 181 (516)
Q Consensus 115 ~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~-----~l~~~~~~~~l~LTATp 181 (516)
.|+++|++++....... ......++++|+||+|.+.+..+.. ........+++++||||
T Consensus 81 ~i~i~t~~~~~~~~~~~--------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERL--------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcC--------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 99999999885532111 0123578999999999999775443 33344567889999998
No 132
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.66 E-value=1.5e-15 Score=140.89 Aligned_cols=152 Identities=25% Similarity=0.340 Sum_probs=109.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCC-
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD- 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~- 96 (516)
..+++|+|.+++..+.... +.+++.+|||+|||.+++.++... .+++||++|+..++.||..++..++....
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~--~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~ 83 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGL--RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLGL 83 (201)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 4679999999999988762 389999999999999777766443 26799999999999999999998764433
Q ss_pred CcEEEEeCCccc----ccc-CCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc----hhHHHHHh
Q 010184 97 DQICRFTSDSKE----RFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----HMFRKVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~----~~~-~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~----~~~~~~l~ 167 (516)
.....+.+.... .+. +..+|+++|++.+........ +....++++|+||+|++.. ..+..++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~ 155 (201)
T smart00487 84 KVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--------LELSNVDLVILDEAHRLLDGGFGDQLEKLLK 155 (201)
T ss_pred EEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--------cCHhHCCEEEEECHHHHhcCCcHHHHHHHHH
Confidence 334444443311 112 223899999998865422110 2235678999999999986 34555555
Q ss_pred hc-ccceEEEEeccCCCC
Q 010184 168 LT-KSHCKLGLTATLVRE 184 (516)
Q Consensus 168 ~~-~~~~~l~LTATp~~~ 184 (516)
.+ +..+++++||||...
T Consensus 156 ~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 156 LLPKNVQLLLLSATPPEE 173 (201)
T ss_pred hCCccceEEEEecCCchh
Confidence 55 467889999999743
No 133
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=3.2e-14 Score=154.48 Aligned_cols=131 Identities=16% Similarity=0.036 Sum_probs=91.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
+.++|||.+++..+.... +.|..++||+|||++++.++.. .+++++||+|++.|+.|..+.+..+....+..+.
T Consensus 91 ~~~tp~qvQ~I~~i~l~~---gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~ 167 (970)
T PRK12899 91 WDMVPYDVQILGAIAMHK---GFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTG 167 (970)
T ss_pred CCCChHHHHHhhhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 348999999999887664 6788899999999999987643 2457999999999999988777765544445677
Q ss_pred EEeCCcccc---ccCCCcEEEEchhhh-hccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 101 RFTSDSKER---FRGNAGVVVTTYNMV-AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 101 ~~~~~~~~~---~~~~~~IvV~T~~~l-~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
.+.|+.... -.-.++|+|+|++.+ ....+.........+.. .+.+.++|+|||+.+.
T Consensus 168 ~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~v-qr~~~~~IIDEADsmL 228 (970)
T PRK12899 168 VLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQV-GRGFYFAIIDEVDSIL 228 (970)
T ss_pred EEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhh-cccccEEEEechhhhh
Confidence 776653311 112489999999988 33222211111111111 3567899999999875
No 134
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.66 E-value=2.1e-14 Score=161.94 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccc
Q 010184 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (516)
Q Consensus 255 ~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~G 327 (516)
++..|.+... ..+.++|||+++...++.++..|. ..++..+.. ..|.+++++|+++ +..+|++|....+|
T Consensus 662 ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~-~~~iLlgt~sf~EG 738 (850)
T TIGR01407 662 IASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNG-EKAILLGTSSFWEG 738 (850)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhC-CCeEEEEcceeecc
Confidence 3334444444 455699999999999999998884 234443333 5789999999997 88899999999999
Q ss_pred ccccccC--EEEEecCCCCCH-----------------------------HHHHHHhhcccccC
Q 010184 328 IDIPEAN--VIIQISSHAGSR-----------------------------RQEAQRLGRILRAK 360 (516)
Q Consensus 328 lDlp~a~--~vI~~~~~~~s~-----------------------------~~~~Qr~GR~~R~g 360 (516)
+|+|+.. +||+..-|+.+| ..+.|.+||+-|..
T Consensus 739 VD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~ 802 (850)
T TIGR01407 739 VDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRE 802 (850)
T ss_pred cccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccC
Confidence 9999988 444432222221 22489999999977
No 135
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.64 E-value=1.1e-14 Score=158.49 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.|+.++..++.... ..+..+||||+++...+.++..|. ..++|+ .+.+|++.+..|..+ ...|+|+|++++
T Consensus 582 eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~VtIATNMAG 657 (1025)
T PRK12900 582 EKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeEEEeccCcC
Confidence 46677766665443 568999999999999999999993 346776 577999999999997 999999999999
Q ss_pred ccccccc---cC-----EEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 326 NSIDIPE---AN-----VIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 326 ~GlDlp~---a~-----~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|+|++- +. +||....| .|++.+.|+.||+||.|.
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterh-es~Rid~Ql~GRtGRqGd 700 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERH-ESRRIDRQLRGRAGRQGD 700 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCC-chHHHHHHHhhhhhcCCC
Confidence 9999993 32 23555555 499999999999999995
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=1.9e-15 Score=130.99 Aligned_cols=107 Identities=29% Similarity=0.406 Sum_probs=94.3
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.|...+..++..+. ..+.++||||++...++.+++.|. +..+||+++..+|..++++|+++ ...+|++|++++
T Consensus 12 ~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEcChhh
Confidence 35556666665554 467899999999999999999983 45799999999999999999997 799999999999
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
+|+|+|.+++||+++.+| +...+.|++||++|.|
T Consensus 90 ~G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~ 123 (131)
T cd00079 90 RGIDLPNVSVVINYDLPW-SPSSYLQRIGRAGRAG 123 (131)
T ss_pred cCcChhhCCEEEEeCCCC-CHHHheecccccccCC
Confidence 999999999999998876 9999999999999999
No 137
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.62 E-value=6.5e-14 Score=152.96 Aligned_cols=289 Identities=16% Similarity=0.163 Sum_probs=174.9
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC----CCEEEEEeChhhHHHHHHHHHHhhCCC-CCcEE
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQIC 100 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~~~v~ 100 (516)
...+..+-+..+-++. ..||++|||+|||.+-=.++...+ +.+.+.=|.+.-+......+..-++.+ +..|+
T Consensus 51 v~~~~~~i~~ai~~~~---vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 51 VTAVRDEILKAIEQNQ---VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred cHHHHHHHHHHHHhCC---EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 3334444444444443 889999999999987666554432 466777799877777777777655543 23343
Q ss_pred EEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hHHHHHhhccc-ce
Q 010184 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKS-HC 173 (516)
Q Consensus 101 ~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~~~l~~~~~-~~ 173 (516)
.-. --.+.......|-++|-++|..... ..-.-..+++||+||+|.=.-. -...++...+. -+
T Consensus 128 Y~i-Rfe~~~s~~Trik~mTdGiLlrei~---------~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 128 YSI-RFESKVSPRTRIKVMTDGILLREIQ---------NDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred EEE-EeeccCCCCceeEEeccHHHHHHHh---------hCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 211 1111123457899999999965422 1111377899999999975432 22333444442 46
Q ss_pred EEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcch
Q 010184 174 KLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (516)
Q Consensus 174 ~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k 252 (516)
.|.||||.-. + .+..+|+ ..+.+ .. |-.-|++........... . +
T Consensus 198 iIimSATld~--~---rfs~~f~~apvi~-----i~--GR~fPVei~Y~~~~~~d~--~--l------------------ 243 (845)
T COG1643 198 LIIMSATLDA--E---RFSAYFGNAPVIE-----IE--GRTYPVEIRYLPEAEADY--I--L------------------ 243 (845)
T ss_pred EEEEecccCH--H---HHHHHcCCCCEEE-----ec--CCccceEEEecCCCCcch--h--H------------------
Confidence 7999999942 2 2334444 22211 11 222233221111111110 0 1
Q ss_pred HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCC---------ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK---------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 253 ~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~---------~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
...+...+..+.......+|||-.-....+..++.|.. .-+||.++.++..++++--..+ .-+|+++|++
T Consensus 244 ~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~-~RKVVlATNI 322 (845)
T COG1643 244 LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG-KRKVVLATNI 322 (845)
T ss_pred HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC-cceEEEEccc
Confidence 12333333333324567899999999988877776632 2489999999988865443333 3339999999
Q ss_pred CcccccccccCEEEEe--------c---------CCCCCHHHHHHHhhcccccCCC
Q 010184 324 GDNSIDIPEANVIIQI--------S---------SHAGSRRQEAQRLGRILRAKGK 362 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~--------~---------~~~~s~~~~~Qr~GR~~R~g~~ 362 (516)
++++|.+|.+..||-- + -.+-|.....||.||+||.++|
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pG 378 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPG 378 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCc
Confidence 9999999999998831 1 1123667779999999999964
No 138
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.61 E-value=1.3e-13 Score=142.92 Aligned_cols=280 Identities=16% Similarity=0.199 Sum_probs=177.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC----CCEEEEEeChhhHHHHHHHHHHhhCC-CCCcEEE---EeCCccccccCCCcE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTI-QDDQICR---FTSDSKERFRGNAGV 116 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~~~v~~---~~~~~~~~~~~~~~I 116 (516)
-.||+++||+|||.+.=.++...+ +.+-+.=|.+.-+.........=.+. .+..|+. |.... .....|
T Consensus 68 vlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~t----s~~Tri 143 (674)
T KOG0922|consen 68 VLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDST----SKDTRI 143 (674)
T ss_pred EEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccC----CCceeE
Confidence 889999999999998777665543 45777779987676666665542222 2233432 22222 234779
Q ss_pred EEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC--ch----hHHHHHhhcccceEEEEeccCCCCccchhh
Q 010184 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP--AH----MFRKVISLTKSHCKLGLTATLVREDERITD 190 (516)
Q Consensus 117 vV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~--~~----~~~~~l~~~~~~~~l~LTATp~~~~~~~~~ 190 (516)
...|-++|... -+.+.+ -.++++||+||||.=. .+ ..+++++.-+.-+.+.+|||..- + .
T Consensus 144 kymTDG~LLRE--------~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSATlda--~---k 209 (674)
T KOG0922|consen 144 KYMTDGMLLRE--------ILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSATLDA--E---K 209 (674)
T ss_pred EEecchHHHHH--------HhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeeeecH--H---H
Confidence 99999999652 122222 3789999999999743 22 23344444344578999999941 1 2
Q ss_pred hHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCC
Q 010184 191 LNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD 269 (516)
Q Consensus 191 l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~ 269 (516)
+..+|+. .++.. .|-.-|++.. +++ +-...|+ . ..+...++.|...+..
T Consensus 210 fS~yF~~a~i~~i-------~GR~fPVei~--y~~---~p~~dYv-~-----------------a~~~tv~~Ih~~E~~G 259 (674)
T KOG0922|consen 210 FSEYFNNAPILTI-------PGRTFPVEIL--YLK---EPTADYV-D-----------------AALITVIQIHLTEPPG 259 (674)
T ss_pred HHHHhcCCceEee-------cCCCCceeEE--ecc---CCchhhH-H-----------------HHHHHHHHHHccCCCC
Confidence 3334432 11111 1333333322 222 1122333 1 2333444445434555
Q ss_pred eEEEEeccHHHHHHHHHHhC---------C----ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEE
Q 010184 270 KIIVFADNLFALTEYAMKLR---------K----PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVI 336 (516)
Q Consensus 270 k~iVF~~~~~~~~~l~~~L~---------~----~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~v 336 (516)
-+|||-...+..+..++.|. + .-+||.++.++..++++.-..| .-+|+++|+++++++.+|.+..|
T Consensus 260 DILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g-~RKvIlsTNIAETSlTI~GI~YV 338 (674)
T KOG0922|consen 260 DILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG-KRKVILSTNIAETSLTIDGIRYV 338 (674)
T ss_pred CEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-cceEEEEcceeeeeEEecceEEE
Confidence 89999999998888877772 1 3489999999988886655444 67799999999999999999888
Q ss_pred EE--------ecC---------CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCch
Q 010184 337 IQ--------ISS---------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (516)
Q Consensus 337 I~--------~~~---------~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~ 387 (516)
|- +++ ++-|..+-.||.||+||.++| ..|+|.++...
T Consensus 339 VDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pG--------------kcyRLYte~~~ 392 (674)
T KOG0922|consen 339 VDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPG--------------KCYRLYTESAY 392 (674)
T ss_pred EcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCc--------------eEEEeeeHHHH
Confidence 73 111 123777889999999999964 45777765544
No 139
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.61 E-value=2.3e-15 Score=147.25 Aligned_cols=273 Identities=16% Similarity=0.193 Sum_probs=163.5
Q ss_pred CEEEEEeChhhHHHHHH---HHHHhhCCCCCcEEEEeCC-c----cccccCCCcEEEEchhhhhccCCCChhHHHHHHHH
Q 010184 70 SCLCLATNAVSVDQWAF---QFKLWSTIQDDQICRFTSD-S----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI 141 (516)
Q Consensus 70 ~~Lvl~P~~~L~~Qw~~---e~~~~~~~~~~~v~~~~~~-~----~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l 141 (516)
..+|+-|+++|++|... +|+.++.-|..+-..+.++ . ...+....+|+|.|+..+...... ..+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--------g~~ 359 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--------GLV 359 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--------cce
Confidence 58999999999999998 5555544343322233332 2 222456789999999877432110 011
Q ss_pred ccCCccEEEEccCccCCchhHHHHHhhcc-----------cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhC
Q 010184 142 RNREWGLLLMDEVHVVPAHMFRKVISLTK-----------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG 210 (516)
Q Consensus 142 ~~~~~~~vIlDEaH~~~~~~~~~~l~~~~-----------~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~ 210 (516)
.-....++|+||++.+....+...+..+. ..+.+..|||..--+-+ .+-.....-..|.+|...
T Consensus 360 ~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVk-----k~~ervmhfptwVdLkge 434 (725)
T KOG0349|consen 360 TLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVK-----KVGERVMHFPTWVDLKGE 434 (725)
T ss_pred eeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEee-----ehhhhhccCceeEecccc
Confidence 12446789999999988765444433321 12456778887532211 000001112234444433
Q ss_pred CCcccceeEEEe---ccCCH---HHHHHHHHhhhhHHH-H-HHhhhCcchH---------HHHHHHHHHHhhcCCCeEEE
Q 010184 211 GFIANVQCAEVW---CPMTK---EFFSEYLKKENSKKK-Q-ALYVMNPNKF---------RACEFLIRFHEQQRGDKIIV 273 (516)
Q Consensus 211 g~l~~~~~~~v~---~~~~~---~~~~~~l~~~~~~~~-~-~l~~~~~~k~---------~~~~~ll~~~~~~~~~k~iV 273 (516)
..++. ....+. ||-.. ...+.++.......+ . +....+|... +.+-..++.| .-+++||
T Consensus 435 D~vpe-tvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h---~mdkaii 510 (725)
T KOG0349|consen 435 DLVPE-TVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH---AMDKAII 510 (725)
T ss_pred cccch-hhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh---ccCceEE
Confidence 22221 111111 11111 111222211111111 1 1111111111 1222333444 3789999
Q ss_pred EeccHHHHHHHHHHhC--------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCC
Q 010184 274 FADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGS 345 (516)
Q Consensus 274 F~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s 345 (516)
||.+...++.+..+++ +..+||+..+.||.+.++.|+.. .+++||||+++++|+|+..+-.+|...-| ..
T Consensus 511 fcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkflictdvaargldi~g~p~~invtlp-d~ 588 (725)
T KOG0349|consen 511 FCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKFLICTDVAARGLDITGLPFMINVTLP-DD 588 (725)
T ss_pred EEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEEEEEehhhhccccccCCceEEEEecC-cc
Confidence 9999999999999883 45699999999999999999998 99999999999999999999999988544 47
Q ss_pred HHHHHHHhhcccccCC
Q 010184 346 RRQEAQRLGRILRAKG 361 (516)
Q Consensus 346 ~~~~~Qr~GR~~R~g~ 361 (516)
...|++|+||++|+..
T Consensus 589 k~nyvhrigrvgraer 604 (725)
T KOG0349|consen 589 KTNYVHRIGRVGRAER 604 (725)
T ss_pred cchhhhhhhccchhhh
Confidence 8899999999999763
No 140
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=6.3e-14 Score=148.63 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
..+++-|.-+.-.++.+ -|..+.||.|||+++..++. ..++.+.|++|+..|+.|=.+.+..++..-+..|+
T Consensus 77 ~r~ydvQlig~l~Ll~G-----~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg 151 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG-----DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVG 151 (764)
T ss_pred CCcchHHHHHHHHHhCC-----CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 45666788888766653 37889999999999987663 35789999999999999966666665544455788
Q ss_pred EEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 101 ~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
..+++.... -.-.++|+-+|...+....-|.+..... +..-.+.+.++|+||++.+.
T Consensus 152 ~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 152 WITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDV-ADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccCh-HhhcCCccceeeecchhhhe
Confidence 877764422 1235889999988887665554322111 22234678899999999865
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.59 E-value=1.3e-13 Score=148.15 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=172.8
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCC-
Q 010184 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQD- 96 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~- 96 (516)
...+.|+..|.--...++.+. ++-+.+|||.|||.-++... +..++++++|+||+.|+.|..+.+.++..-..
T Consensus 78 ~~G~~~ws~QR~WakR~~rg~---SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 78 ATGFRPWSAQRVWAKRLVRGK---SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred hhCCCchHHHHHHHHHHHcCC---ceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 345689999999999888876 99999999999998766543 55568999999999999999999998852222
Q ss_pred CcEEE-EeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--hhHHH
Q 010184 97 DQICR-FTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRK 164 (516)
Q Consensus 97 ~~v~~-~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~ 164 (516)
..+.. |++..+.+ -.++.+|+|||-+-+.+ ..+.|...+|++|++|.++.+.- +...+
T Consensus 155 ~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k----------~~e~L~~~kFdfifVDDVDA~LkaskNvDr 224 (1187)
T COG1110 155 LDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSK----------RFEELSKLKFDFIFVDDVDAILKASKNVDR 224 (1187)
T ss_pred cceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHh----------hHHHhcccCCCEEEEccHHHHHhccccHHH
Confidence 22222 66663211 24789999999988844 46778778999999999997641 11111
Q ss_pred HHhh---------------------------------------------cccceEEEEeccCCCCccchhhhHhhhCCcc
Q 010184 165 VISL---------------------------------------------TKSHCKLGLTATLVREDERITDLNFLIGPKL 199 (516)
Q Consensus 165 ~l~~---------------------------------------------~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~ 199 (516)
++.. .+..+.+..|||-.........+..++|=..
T Consensus 225 iL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFev 304 (1187)
T COG1110 225 LLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEV 304 (1187)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCcc
Confidence 1111 1123456667776554444434444443110
Q ss_pred ccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEecc--
Q 010184 200 YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADN-- 277 (516)
Q Consensus 200 ~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~-- 277 (516)
.... -.+.++ ..+ +..+ .-...+..|++.+ |.-.|||++.
T Consensus 305 ---G~~~----~~LRNI--vD~------------------------y~~~-~~~e~~~elvk~l----G~GgLIfV~~d~ 346 (1187)
T COG1110 305 ---GSGG----EGLRNI--VDI------------------------YVES-ESLEKVVELVKKL----GDGGLIFVPIDY 346 (1187)
T ss_pred ---Cccc----hhhhhe--eee------------------------eccC-ccHHHHHHHHHHh----CCCeEEEEEcHH
Confidence 0000 001111 001 1111 1122344455544 5678999999
Q ss_pred -HHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEE----eCCCcccccccccC-EEEEecCC
Q 010184 278 -LFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPEAN-VIIQISSH 342 (516)
Q Consensus 278 -~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~----t~~~~~GlDlp~a~-~vI~~~~~ 342 (516)
++.+++++++|. +..+|. ...+.++.|..| ++++||+ ..++-+|||+|..- .+|++..|
T Consensus 347 G~e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 347 GREKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred hHHHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccC-ceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 889999999993 334444 336789999998 9999987 36889999999875 77776443
No 142
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.55 E-value=2.5e-13 Score=147.45 Aligned_cols=128 Identities=18% Similarity=0.104 Sum_probs=87.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
.+++.|.-+--.+.. +.|.-+.||.|||+++..++ +..++.+.|++|+..|+.+-.+.+..++..-+..|+.
T Consensus 82 ~~ydVQliGg~~Lh~-----G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 82 RHFDVQLIGGMTLHE-----GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred CcchhHHHhhhHhcc-----CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 445556655443322 44888999999999988765 3457899999999999999777777776666667888
Q ss_pred EeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 102 FTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 102 ~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
++++.... -.-.++|+++|...+....-|.+.... .+..-.+.++++|+||+|.+.
T Consensus 157 i~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~-~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 157 VTPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFS-LDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ECCCCCHHHHHHHhcCCEEEEcccccccchhhccceec-hhhhcccccceeEechhhhee
Confidence 87764322 123489999999887444322221111 122224778999999999875
No 143
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=7.2e-15 Score=115.64 Aligned_cols=70 Identities=27% Similarity=0.442 Sum_probs=66.0
Q ss_pred CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 289 ~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
++..+||+++..+|..+++.|+++ ...+||+|+++++|+|+|.+++||++++++ |+..+.|++||++|.|
T Consensus 9 ~~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 9 KVAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLPDASHVIFYDPPW-SPEEYIQRIGRAGRIG 78 (78)
T ss_dssp SEEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTSTTESEEEESSSES-SHHHHHHHHTTSSTTT
T ss_pred cEEEEECCCCHHHHHHHHHHhhcc-CceEEEeeccccccccccccccccccccCC-CHHHHHHHhhcCCCCC
Confidence 456799999999999999999998 889999999999999999999999998876 9999999999999986
No 144
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.49 E-value=9.1e-12 Score=138.97 Aligned_cols=66 Identities=20% Similarity=0.199 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHHHHHH---HhCCCCcccEEEecCCCcHHHHHHHHHHhc--CCCEEEEEeChhhHHHHH-HHHH
Q 010184 22 PHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWA-FQFK 89 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~-~e~~ 89 (516)
+.++.||-|.+....+ +.++ ...++.++||+|||+.++.++... +.+++|++||++|..|.. +++.
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~--~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDG--PASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCC--CcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHH
Confidence 4579999999955544 5444 467888999999999999876543 579999999999999983 4444
No 145
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.47 E-value=1.2e-12 Score=140.75 Aligned_cols=117 Identities=20% Similarity=0.220 Sum_probs=83.1
Q ss_pred cchHHHHHHHH-HHHhhcCCCeEEEEeccHHHHHHHHHHhC---C--ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 250 PNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 250 ~~k~~~~~~ll-~~~~~~~~~k~iVF~~~~~~~~~l~~~L~---~--~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
..|+.++..-+ ..| ..|..+||.|.+++..+.++..|. + .+++.... +++.-+=. +.|..-.|.|+|++
T Consensus 409 ~~K~~Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNM 483 (925)
T PRK12903 409 HAKWKAVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH-hCCCCCeEEEeccc
Confidence 35666555444 455 478999999999999999999993 2 24555433 33332222 45545678899999
Q ss_pred CcccccccccC--------EEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEE
Q 010184 324 GDNSIDIPEAN--------VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382 (516)
Q Consensus 324 ~~~GlDlp~a~--------~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv 382 (516)
+|+|.|+.--. +||....| .|++..-|..||+||-|. .|...|+.+|-
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerh-eSrRIDnQLrGRaGRQGD----------pGss~f~lSLe 539 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKA-ESRRIDNQLRGRSGRQGD----------VGESRFFISLD 539 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccC-chHHHHHHHhcccccCCC----------CCcceEEEecc
Confidence 99999997432 67766566 499999999999999995 55566666553
No 146
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.47 E-value=7.8e-12 Score=137.10 Aligned_cols=334 Identities=17% Similarity=0.166 Sum_probs=184.1
Q ss_pred CCCCHHHHHHHHHHHh---C-CCCccc-EEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 24 AQPRPYQEKSLSKMFG---N-GRARSG-IIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~---~-~~~~~~-il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
..-+-||-+|.+.+.. . ...+-. +-.+.||+|||+.=.-+++.+ +-++.|-.-.++|.-|.-+++++-++
T Consensus 407 ~~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 407 HPRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CCCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcC
Confidence 3456789999986543 1 111233 334679999999876665443 23677777778888888888877777
Q ss_pred CCCCcEEEEeCCcc------------------------------c------------------ccc--------CCCcEE
Q 010184 94 IQDDQICRFTSDSK------------------------------E------------------RFR--------GNAGVV 117 (516)
Q Consensus 94 ~~~~~v~~~~~~~~------------------------------~------------------~~~--------~~~~Iv 117 (516)
+.++.+.++.|+.. + .+. -...|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 76666655544210 0 000 126799
Q ss_pred EEchhhhhccC--CC-ChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc-----cceEEEEeccCCCCccchh
Q 010184 118 VTTYNMVAFGG--KR-SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-----SHCKLGLTATLVREDERIT 189 (516)
Q Consensus 118 V~T~~~l~~~~--~r-~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~-----~~~~l~LTATp~~~~~~~~ 189 (516)
|+|.+.+.... .| .+....++.. --+.|||||+|.+...++..+...+. ...+++||||.+..-..
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~L----a~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~-- 640 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRL----MSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALVK-- 640 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHh----cCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHH--
Confidence 99998776543 22 2222222222 23589999999998876554444332 45689999998743221
Q ss_pred hhHhh--hCCccccccHHHHHhCCCc-ccceeEEEeccC----------CHHHHH---HHHHhh-------hhHHHHHHh
Q 010184 190 DLNFL--IGPKLYEANWLDLVKGGFI-ANVQCAEVWCPM----------TKEFFS---EYLKKE-------NSKKKQALY 246 (516)
Q Consensus 190 ~l~~~--~gp~~~~~~~~~l~~~g~l-~~~~~~~v~~~~----------~~~~~~---~~l~~~-------~~~~~~~l~ 246 (516)
.|..- -|-..|... .|.- .++.+-..|+.- ..+|.. .|+... ..+.+..+.
T Consensus 641 ~L~~Ay~~G~~~~q~~------~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~ 714 (1110)
T TIGR02562 641 TLFRAYEAGRQMYQAL------YGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELL 714 (1110)
T ss_pred HHHHHHHHHHHHHHHh------cCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEe
Confidence 11111 122222211 1111 122222233221 122222 222110 001111111
Q ss_pred -hhCcc-----hH-----HHHHHHHHHHh------hcCCCeE---EEEeccHHHHHHHHHHh-------C----CceEec
Q 010184 247 -VMNPN-----KF-----RACEFLIRFHE------QQRGDKI---IVFADNLFALTEYAMKL-------R----KPMIYG 295 (516)
Q Consensus 247 -~~~~~-----k~-----~~~~~ll~~~~------~~~~~k~---iVF~~~~~~~~~l~~~L-------~----~~~i~g 295 (516)
+..+. .. .+.+.++..|. ...|++| +|-..++..+-.++..| + +.++|+
T Consensus 715 ~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHS 794 (1110)
T TIGR02562 715 SLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHA 794 (1110)
T ss_pred ecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecc
Confidence 11110 11 12223333332 1234444 66677888877777776 1 446788
Q ss_pred CCCHHHHHHHHHHH----------------------hcC---CCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHH
Q 010184 296 ATSHVERTKILQAF----------------------KCS---RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEA 350 (516)
Q Consensus 296 ~~~~~eR~~~l~~F----------------------~~~---~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~ 350 (516)
..+-..|..+.++. +++ ....++|+|++.+.|+|+ +.|.+|.- . .+....+
T Consensus 795 r~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~-dfd~~~~~-~--~~~~sli 870 (1110)
T TIGR02562 795 QDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDH-DYDWAIAD-P--SSMRSII 870 (1110)
T ss_pred cChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEecc-cCCeeeec-c--CcHHHHH
Confidence 88777776554332 121 145688899999999999 69988864 2 3777889
Q ss_pred HHhhcccccCCCccccccCCCCceeEEEEE
Q 010184 351 QRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380 (516)
Q Consensus 351 Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~ 380 (516)
|+.||+.|.+.... +..|.++|.
T Consensus 871 Q~aGR~~R~~~~~~-------~~~N~~i~~ 893 (1110)
T TIGR02562 871 QLAGRVNRHRLEKV-------QQPNIVILQ 893 (1110)
T ss_pred HHhhcccccccCCC-------CCCcEEEeH
Confidence 99999999986433 445555553
No 147
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.46 E-value=1.4e-12 Score=134.26 Aligned_cols=284 Identities=18% Similarity=0.187 Sum_probs=169.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC----CCEEEEEeChhhHHHHHHHHHHhhCCC-CCcEE---EEeCCccccccCCCcE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQ-DDQIC---RFTSDSKERFRGNAGV 116 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~~~v~---~~~~~~~~~~~~~~~I 116 (516)
-.+|+++||+|||.+--.++..-+ +-+-+--|.++-+-........=.+.+ +..|+ .|..-. .....|
T Consensus 373 vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT----~~~T~I 448 (1042)
T KOG0924|consen 373 VVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVT----SEDTKI 448 (1042)
T ss_pred EEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecC----CCceeE
Confidence 778899999999998877775543 333444488877777776666543332 12222 122211 123557
Q ss_pred EEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--h----hHHHHHhhcccceEEEEeccCCCCccchhh
Q 010184 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H----MFRKVISLTKSHCKLGLTATLVREDERITD 190 (516)
Q Consensus 117 vV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~----~~~~~l~~~~~~~~l~LTATp~~~~~~~~~ 190 (516)
-.+|-+.|... .+.+.. -.++.+||+||||.-.- . .+..++..-..-..|..|||.. ...
T Consensus 449 kymTDGiLLrE--------sL~d~~-L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~-----a~k 514 (1042)
T KOG0924|consen 449 KYMTDGILLRE--------SLKDRD-LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD-----AQK 514 (1042)
T ss_pred EEeccchHHHH--------Hhhhhh-hhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc-----HHH
Confidence 77888777542 122221 26789999999997542 2 2233333323345688899984 123
Q ss_pred hHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCC
Q 010184 191 LNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGD 269 (516)
Q Consensus 191 l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~ 269 (516)
+..+||. ..+.. .|-.-|++ +-.+....+.|+ . .++...+..|...+..
T Consensus 515 f~nfFgn~p~f~I-------pGRTyPV~-----~~~~k~p~eDYV-e-----------------aavkq~v~Ihl~~~~G 564 (1042)
T KOG0924|consen 515 FSNFFGNCPQFTI-------PGRTYPVE-----IMYTKTPVEDYV-E-----------------AAVKQAVQIHLSGPPG 564 (1042)
T ss_pred HHHHhCCCceeee-------cCCccceE-----EEeccCchHHHH-H-----------------HHHhhheEeeccCCCC
Confidence 4556661 21111 12222222 222222234444 1 1333444445434546
Q ss_pred eEEEEeccHHH----HHHHHHHhC-----------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccC
Q 010184 270 KIIVFADNLFA----LTEYAMKLR-----------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN 334 (516)
Q Consensus 270 k~iVF~~~~~~----~~~l~~~L~-----------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~ 334 (516)
-+|||..-.+. +..+...|. +.-||+.+|..-..++++.-..+ .-++||+|+++++++.+|.+.
T Consensus 565 dilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-vRK~IvATNIAETSLTi~gI~ 643 (1042)
T KOG0924|consen 565 DILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-VRKCIVATNIAETSLTIPGIR 643 (1042)
T ss_pred CEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-ceeEEEeccchhhceeecceE
Confidence 78888765443 334444441 33489999988877776654444 667999999999999999999
Q ss_pred EEEEe--------cCC---------CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 335 VIIQI--------SSH---------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 335 ~vI~~--------~~~---------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
+||-. .+. +-|.++-.||.||+||.||| ..|++.+.++....+
T Consensus 644 yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG--------------~cYRlYTe~ay~~em 703 (1042)
T KOG0924|consen 644 YVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPG--------------TCYRLYTEDAYKNEM 703 (1042)
T ss_pred EEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCc--------------ceeeehhhhHHHhhc
Confidence 98842 111 12667779999999999963 568888887776544
No 148
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.45 E-value=3.7e-11 Score=132.22 Aligned_cols=170 Identities=13% Similarity=0.152 Sum_probs=104.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC-----CCEEEEEeChhhHHHHHHHHH-----Hhh----CCCCCcEEEEeCCccc--
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFK-----LWS----TIQDDQICRFTSDSKE-- 108 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~e~~-----~~~----~~~~~~v~~~~~~~~~-- 108 (516)
+..+.|+||+|||.+++..+..+. .++||+||+.++.+.+..-|. .+| +-....+.++.+..+.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 678899999999999998875542 579999999998877664432 222 2222344556554310
Q ss_pred ---cc--------------cCCCcEEEEchhhhhccCC--CChh------HHHHHHHHccCCccEEEEccCccCCc--hh
Q 010184 109 ---RF--------------RGNAGVVVTTYNMVAFGGK--RSEE------SEKIIEEIRNREWGLLLMDEVHVVPA--HM 161 (516)
Q Consensus 109 ---~~--------------~~~~~IvV~T~~~l~~~~~--r~~~------~~~~~~~l~~~~~~~vIlDEaH~~~~--~~ 161 (516)
.+ .+...|.|+|.+++.+... +-++ ...-++.+...++ +||+||.|++.. ..
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~P-ivIiDEPh~~~~~~k~ 219 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRP-VVIIDEPHRFPRDNKF 219 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCC-EEEEECCCCCCcchHH
Confidence 00 1146899999999977422 1111 0123455555555 899999999965 35
Q ss_pred HHHHHhhcccceEEEEeccCCCCc---cc--hhhhHhhhCCccccccHHHHHhCCCccccee
Q 010184 162 FRKVISLTKSHCKLGLTATLVRED---ER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQC 218 (516)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~---~~--~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~ 218 (516)
+. .+..+...++|..|||-.... ++ ... .. .-..+|..+..++-+++.+..+..
T Consensus 220 ~~-~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~-~d-~~NlvY~LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 220 YQ-AIEALKPQMIIRFGATFPDITEGKGKNKCTR-KD-YYNLQFDLNAVDSFNDGLVKGVDI 278 (986)
T ss_pred HH-HHHhcCcccEEEEeeecCCcccccccccccc-cc-ccCceeecCHHHHHHhCCcceEEE
Confidence 54 457778888899999986410 11 000 00 114456666666666665554433
No 149
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.44 E-value=5.4e-12 Score=137.66 Aligned_cols=315 Identities=15% Similarity=0.147 Sum_probs=187.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHh-hCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLW-STIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~-~~~~~ 96 (516)
...+.+++..++.+-++. -.+|.++||+|||.+.-.++... ..++++--|++-.+-...+....= ....+
T Consensus 172 LPa~~~r~~Il~~i~~~q---VvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 172 LPAYKMRDTILDAIEENQ---VVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred CccHHHHHHHHHHHHhCc---eEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 334556666677665554 88999999999999887776432 345555568765555555544431 12222
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hHHHHHhhcc
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTK 170 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~~~l~~~~ 170 (516)
..|+.-..-.+.. .....+.++|.+.+...+.. ... ......+|+||+|.=.-+ ..+.++..-+
T Consensus 249 ~~VGYqvrl~~~~-s~~t~L~fcTtGvLLr~L~~-------~~~--l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p 318 (924)
T KOG0920|consen 249 EEVGYQVRLESKR-SRETRLLFCTTGVLLRRLQS-------DPT--LSGVTHIIVDEVHERSINTDFLLILLKDLLPRNP 318 (924)
T ss_pred CeeeEEEeeeccc-CCceeEEEecHHHHHHHhcc-------Ccc--cccCceeeeeeEEEccCCcccHHHHHHHHhhhCC
Confidence 3343322222221 23478999999888553221 111 256789999999975432 2222333334
Q ss_pred cceEEEEeccCCCCccchhhhHhhhC--CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhh-----hhHHH-
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIG--PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE-----NSKKK- 242 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~g--p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~-----~~~~~- 242 (516)
.-++++||||..- .....+|| |.+.- .|. ..|...-+.++.+... .....
T Consensus 319 ~LkvILMSAT~da-----e~fs~YF~~~pvi~i--------~gr---------tfpV~~~fLEDil~~~~~~~~~~~~~~ 376 (924)
T KOG0920|consen 319 DLKVILMSATLDA-----ELFSDYFGGCPVITI--------PGR---------TFPVKEYFLEDILSKTGYVSEDDSARS 376 (924)
T ss_pred CceEEEeeeecch-----HHHHHHhCCCceEee--------cCC---------CcchHHHHHHHHHHHhccccccccccc
Confidence 5578999999851 12334444 11100 000 0011111112111000 00000
Q ss_pred ---------HHHhhhC-cchHHHHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHhC------------CceEecCCCH
Q 010184 243 ---------QALYVMN-PNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR------------KPMIYGATSH 299 (516)
Q Consensus 243 ---------~~l~~~~-~~k~~~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L~------------~~~i~g~~~~ 299 (516)
..+.... .-...++..++.+.. ......+|||-+....+..+...|. +..+|+.++.
T Consensus 377 ~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s 456 (924)
T KOG0920|consen 377 GPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPS 456 (924)
T ss_pred ccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCCh
Confidence 0011111 124556777776543 2335689999999999999988883 1247999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe-----------------cCCCCCHHHHHHHhhcccccCCC
Q 010184 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI-----------------SSHAGSRRQEAQRLGRILRAKGK 362 (516)
Q Consensus 300 ~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~-----------------~~~~~s~~~~~Qr~GR~~R~g~~ 362 (516)
.+...+...--.+ .-++|++|.+++++|.++++-.||-. ...|-|...-.||.||+||.-+
T Consensus 457 ~eQ~~VF~~pp~g-~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~- 534 (924)
T KOG0920|consen 457 EEQQAVFKRPPKG-TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP- 534 (924)
T ss_pred HHHHHhcCCCCCC-cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC-
Confidence 9988887666554 67799999999999999998887742 1123478888999999999884
Q ss_pred ccccccCCCCceeEEEEEEEcCCchh
Q 010184 363 LEDRMAGGKEEYNAFFYSLVSTDTQE 388 (516)
Q Consensus 363 ~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (516)
...|.|.+..-.+
T Consensus 535 -------------G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 535 -------------GICYHLYTRSRYE 547 (924)
T ss_pred -------------CeeEEeechhhhh
Confidence 4668888765544
No 150
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=2.7e-12 Score=129.86 Aligned_cols=244 Identities=19% Similarity=0.186 Sum_probs=156.1
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccC---CCcEEEEchhh
Q 010184 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG---NAGVVVTTYNM 123 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~---~~~IvV~T~~~ 123 (516)
+=++||.+|||.-|+.=.... ++-++--|.+-|+...++.+... ++ .+..++|+.+..... .+..+-+|.+|
T Consensus 195 ~H~GPTNSGKTy~ALqrl~~a-ksGvycGPLrLLA~EV~~r~na~-gi---pCdL~TGeE~~~~~~~~~~a~hvScTVEM 269 (700)
T KOG0953|consen 195 MHVGPTNSGKTYRALQRLKSA-KSGVYCGPLRLLAHEVYDRLNAL-GI---PCDLLTGEERRFVLDNGNPAQHVSCTVEM 269 (700)
T ss_pred EEeCCCCCchhHHHHHHHhhh-ccceecchHHHHHHHHHHHhhhc-CC---CccccccceeeecCCCCCcccceEEEEEE
Confidence 335899999999988655443 46788899999999888877764 33 466778877654332 47788889998
Q ss_pred hhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcccceEEEEeccCCCCccchhhhHhhhCCcc
Q 010184 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKL 199 (516)
Q Consensus 124 l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~ 199 (516)
+.- ...+++.|+||.+.+..+ .|.+.+-.+.+. - ..++|...
T Consensus 270 ~sv----------------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~Ad--------E----------iHLCGeps 315 (700)
T KOG0953|consen 270 VSV----------------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAAD--------E----------IHLCGEPS 315 (700)
T ss_pred eec----------------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhh--------h----------hhccCCch
Confidence 854 367899999999999876 444444333222 1 12233211
Q ss_pred ccccHHHHHh-----CCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHH-HHhhcCCCeEEE
Q 010184 200 YEANWLDLVK-----GGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIR-FHEQQRGDKIIV 273 (516)
Q Consensus 200 ~~~~~~~l~~-----~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~-~~~~~~~~k~iV 273 (516)
..++++ .|--..+..++...|++.+ +.++. ...-.+|+-++.
T Consensus 316 ----vldlV~~i~k~TGd~vev~~YeRl~pL~v~----------------------------~~~~~sl~nlk~GDCvV~ 363 (700)
T KOG0953|consen 316 ----VLDLVRKILKMTGDDVEVREYERLSPLVVE----------------------------ETALGSLSNLKPGDCVVA 363 (700)
T ss_pred ----HHHHHHHHHhhcCCeeEEEeecccCcceeh----------------------------hhhhhhhccCCCCCeEEE
Confidence 111111 1111112222222222211 11111 111157888888
Q ss_pred EeccHH-HH-HHHHHHh--CCceEecCCCHHHHHHHHHHHhcC-CCccEEEEeCCCcccccccccCEEEEecCC------
Q 010184 274 FADNLF-AL-TEYAMKL--RKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSH------ 342 (516)
Q Consensus 274 F~~~~~-~~-~~l~~~L--~~~~i~g~~~~~eR~~~l~~F~~~-~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~------ 342 (516)
|+...- .+ ..+.+.. ++++|||++|++.|.+--..|++. ++++|||+|++.|+|+|| +++-||+++-.
T Consensus 364 FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL-~IrRiiF~sl~Kysg~e 442 (700)
T KOG0953|consen 364 FSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNL-NIRRIIFYSLIKYSGRE 442 (700)
T ss_pred eehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccccccc-ceeEEEEeecccCCccc
Confidence 986532 22 2333333 378999999999999999999984 489999999999999999 58877776221
Q ss_pred --CCCHHHHHHHhhcccccCCC
Q 010184 343 --AGSRRQEAQRLGRILRAKGK 362 (516)
Q Consensus 343 --~~s~~~~~Qr~GR~~R~g~~ 362 (516)
.-+..+..|..||+||-|.+
T Consensus 443 ~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 443 TEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred ceeccHHHHHHHhhcccccccC
Confidence 11456779999999999853
No 151
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=2.6e-12 Score=134.55 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=81.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC---------CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE---EEeCCcccccc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK---------KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC---RFTSDSKERFR 111 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~---------~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~---~~~~~~~~~~~ 111 (516)
.-.||+++||+|||.+.=.++...+ +-+=|--|.++-+--.......=++..+..|+ +|.|...+
T Consensus 272 ~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e--- 348 (1172)
T KOG0926|consen 272 PVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGE--- 348 (1172)
T ss_pred CeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccCC---
Confidence 3789999999999998776665543 23445558887665555554433333344453 35555433
Q ss_pred CCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--h----hHHHHHh----------hcccceEE
Q 010184 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H----MFRKVIS----------LTKSHCKL 175 (516)
Q Consensus 112 ~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~----~~~~~l~----------~~~~~~~l 175 (516)
...|-++|-+.|.. .+...+.-.+++.||+||||.-.- . +..+++. .++.-..|
T Consensus 349 -~T~IkFMTDGVLLr---------Ei~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLI 418 (1172)
T KOG0926|consen 349 -DTSIKFMTDGVLLR---------EIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLI 418 (1172)
T ss_pred -CceeEEecchHHHH---------HHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEE
Confidence 47899999998855 233334458899999999997442 1 2222221 12234679
Q ss_pred EEeccCCCCc
Q 010184 176 GLTATLVRED 185 (516)
Q Consensus 176 ~LTATp~~~~ 185 (516)
.||||+--.|
T Consensus 419 IMSATLRVsD 428 (1172)
T KOG0926|consen 419 IMSATLRVSD 428 (1172)
T ss_pred EEeeeEEecc
Confidence 9999996444
No 152
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.44 E-value=2.4e-12 Score=132.42 Aligned_cols=286 Identities=18% Similarity=0.178 Sum_probs=169.1
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCC-Cc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~-~~ 98 (516)
..++|-.+-+..+-.+. -.||.++||+|||.+.=.++... ++.+-+--|.++.+........+=.+..- ..
T Consensus 265 PVy~ykdell~av~e~Q---VLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQ---VLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred CchhhHHHHHHHHHhCc---EEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 34555555555555544 77899999999998765555443 23466666888878777776665433221 12
Q ss_pred EE---EEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--h-hHH---HHHhhc
Q 010184 99 IC---RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H-MFR---KVISLT 169 (516)
Q Consensus 99 v~---~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~-~~~---~~l~~~ 169 (516)
|+ .|..... ....+-.+|-+||.. .++....-..+++||+||||.=.- . -|. .++..-
T Consensus 342 VGYsIRFEdcTS----ekTvlKYMTDGmLlR---------EfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~R 408 (902)
T KOG0923|consen 342 VGYSIRFEDCTS----EKTVLKYMTDGMLLR---------EFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFR 408 (902)
T ss_pred cceEEEeccccC----cceeeeeecchhHHH---------HHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhC
Confidence 22 1222222 235577899999954 233333336788999999997432 2 222 222222
Q ss_pred ccceEEEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhh
Q 010184 170 KSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (516)
Q Consensus 170 ~~~~~l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~ 248 (516)
+.-..|..|||..- + ....+|+. .+|..+ |---|+. .-.+..--..|+ .
T Consensus 409 pdLKllIsSAT~DA--e---kFS~fFDdapIF~iP-------GRRyPVd-----i~Yt~~PEAdYl-d------------ 458 (902)
T KOG0923|consen 409 PDLKLLISSATMDA--E---KFSAFFDDAPIFRIP-------GRRYPVD-----IFYTKAPEADYL-D------------ 458 (902)
T ss_pred CcceEEeeccccCH--H---HHHHhccCCcEEecc-------Cccccee-----eecccCCchhHH-H------------
Confidence 33356778999842 1 12233332 122111 1111111 111111112333 0
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-------C-------CceEecCCCHHHHHHHHHHHhcCCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------R-------KPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------~-------~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
.++..+++.|...+..-+|||---.+..+.....| + +.-||..+|.+...++++---.| -
T Consensus 459 -----Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g-a 532 (902)
T KOG0923|consen 459 -----AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG-A 532 (902)
T ss_pred -----HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC-c
Confidence 24445556665567788999987776655544444 3 23489999998887775543333 4
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCC-------------------CCCHHHHHHHhhcccccCCCcc
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSH-------------------AGSRRQEAQRLGRILRAKGKLE 364 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~-------------------~~s~~~~~Qr~GR~~R~g~~~~ 364 (516)
-+|+++|++++++|.++++..||- |. +-|...-.||.||+||.|||+.
T Consensus 533 RKVVLATNIAETSlTIdgI~yViD--pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKC 599 (902)
T KOG0923|consen 533 RKVVLATNIAETSLTIDGIKYVID--PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKC 599 (902)
T ss_pred eeEEEeecchhhceeecCeEEEec--CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCce
Confidence 679999999999999999988873 11 1255666999999999997654
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.37 E-value=1.5e-12 Score=102.89 Aligned_cols=70 Identities=26% Similarity=0.415 Sum_probs=64.8
Q ss_pred CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 289 ~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
.+..+||+++.++|..+++.|+++ ...+|++|+++++|+|+|.+++||++++++ |...+.|++||++|.|
T Consensus 13 ~~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 13 KVARLHGGLSQEEREEILEKFNNG-KIKVLVATDVAERGLDLPGVDLVIIYDLPW-SPASYIQRIGRAGRAG 82 (82)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC-CCeEEEECChhhCCcChhcCCEEEEeCCCC-CHHHHHHhhcccccCC
Confidence 355799999999999999999997 779999999999999999999999998776 9999999999999976
No 154
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.36 E-value=2.4e-11 Score=131.69 Aligned_cols=126 Identities=15% Similarity=0.148 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHH---HHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ---WAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Q---w~~e~~~~~~~~~~ 97 (516)
..+++-|.-+.-.+. . +.|.-+.||.|||+++..++. ..++.|-||+++..|+.+ |...+-+|+|+
T Consensus 75 ~r~ydvQlig~l~L~-~----G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGL--- 146 (870)
T CHL00122 75 LRHFDVQLIGGLVLN-D----GKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGL--- 146 (870)
T ss_pred CCCCchHhhhhHhhc-C----CccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCC---
Confidence 345555666544332 2 458889999999999887662 347899999999999876 77777788776
Q ss_pred cEEEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 98 QICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 98 ~v~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
.++...++.... -.-.++|+-+|...+....-|.+..... +..-.+.+.++|+||++.+.
T Consensus 147 svg~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 147 TVGLIQEGMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSL-SDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred ceeeeCCCCChHHHHHhcCCCCEecCCccccccchhhccCcCh-HHhhccccceeeeecchhhe
Confidence 455555543311 1234789999988776654443221111 11224678899999999875
No 155
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=1.4e-11 Score=105.68 Aligned_cols=127 Identities=17% Similarity=0.152 Sum_probs=74.5
Q ss_pred cccEEEecCCCcHHHHHHHHH----HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
...+|-+.+|+|||.-.+.-+ ...+.++|||.||++++.+..+.++.. .+...+........+..-|-|+
T Consensus 5 ~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~------~~~~~t~~~~~~~~g~~~i~vM 78 (148)
T PF07652_consen 5 ELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGL------PVRFHTNARMRTHFGSSIIDVM 78 (148)
T ss_dssp EEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTS------SEEEESTTSS----SSSSEEEE
T ss_pred ceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcC------CcccCceeeeccccCCCccccc
Confidence 356888999999998655432 234689999999999998877777542 2333333222223456778999
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHHh---hcccceEEEEeccCCCCc
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVIS---LTKSHCKLGLTATLVRED 185 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~---~~~~~~~l~LTATp~~~~ 185 (516)
||..+.+. .+......+|+++|+||||..... .++-.+. .......|.+||||+-..
T Consensus 79 c~at~~~~---------~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 79 CHATYGHF---------LLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp EHHHHHHH---------HHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred ccHHHHHH---------hcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 99887542 233333478999999999997754 2222222 223346899999998544
No 156
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.27 E-value=1.1e-09 Score=124.37 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccc
Q 010184 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (516)
Q Consensus 255 ~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~G 327 (516)
++..|.+... ..+.+++||..+...++.++..|. ..++.-++....|.+++++|+.+ +-.||++|....+|
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLlG~~sFwEG 817 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEEecCcccCc
Confidence 3344444444 455689999999999999988883 22333233334688999999986 66799999999999
Q ss_pred cccccc--CEEEEecCCCCCHH-----------------------------HHHHHhhcccccC
Q 010184 328 IDIPEA--NVIIQISSHAGSRR-----------------------------QEAQRLGRILRAK 360 (516)
Q Consensus 328 lDlp~a--~~vI~~~~~~~s~~-----------------------------~~~Qr~GR~~R~g 360 (516)
+|+|+- .+||+..-|+.+|. .+.|.+||.-|..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~ 881 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTE 881 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccC
Confidence 999986 46766532332221 1289999999977
No 157
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=1.9e-10 Score=124.56 Aligned_cols=125 Identities=17% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHH---HHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ---WAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Q---w~~e~~~~~~~~~~~ 98 (516)
.+++.|.-+--.+.. +.|..+.||-|||+++..++. ..++.|-||+++..|+.. |...+-+|+|+ .
T Consensus 85 r~ydVQliGgl~Lh~-----G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGL---t 156 (939)
T PRK12902 85 RHFDVQLIGGMVLHE-----GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGL---S 156 (939)
T ss_pred CcchhHHHhhhhhcC-----CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCC---e
Confidence 344446555443322 458889999999999887663 347899999999999875 88888888887 4
Q ss_pred EEEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 99 ICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 99 v~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
|++..++.... ..-.++|+.+|...+....-|.+.... ....-.+.+.++|+||++.+.
T Consensus 157 vg~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~-~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 157 VGLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATD-ISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhccc-ccccccCccceEEEeccccee
Confidence 56655543211 124689999999888665444332211 111223677899999999875
No 158
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.21 E-value=6.2e-10 Score=107.43 Aligned_cols=212 Identities=14% Similarity=0.073 Sum_probs=135.4
Q ss_pred CCCCCCHHHHHHHHHHH-------hCCCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHH
Q 010184 22 PHAQPRPYQEKSLSKMF-------GNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~-------~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
....|-+-|.+++--.. .++.....+|-+.||.||..+...+|... +++.+||..+..|...-.+.+..
T Consensus 34 ~~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 34 DSGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred hcccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHH
Confidence 35678999999987442 23333455667889999998887777432 35799999999999998888887
Q ss_pred hhCCCCCcEEEEeCCcccc-ccCCCcEEEEchhhhhccC----CCChhHHHHHHHHccCCccEEEEccCccCCchhH---
Q 010184 91 WSTIQDDQICRFTSDSKER-FRGNAGVVVTTYNMVAFGG----KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF--- 162 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~-~~~~~~IvV~T~~~l~~~~----~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~--- 162 (516)
. +.....+..+..-.... ..-..+|+++||..|.... +......++.+++....-++||+||||..++..-
T Consensus 114 I-G~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~ 192 (303)
T PF13872_consen 114 I-GADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSK 192 (303)
T ss_pred h-CCCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCc
Confidence 5 33333333332211111 1234679999999997763 2233456777888766678999999999986311
Q ss_pred ---------HHHHhhcccceEEEEeccCCCCccchhhhHh--hhC-------------------CccccccHHHHHhCCC
Q 010184 163 ---------RKVISLTKSHCKLGLTATLVREDERITDLNF--LIG-------------------PKLYEANWLDLVKGGF 212 (516)
Q Consensus 163 ---------~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~--~~g-------------------p~~~~~~~~~l~~~g~ 212 (516)
..+-..++..+++..|||...+-....-+.. +.| ....+.--+++...|.
T Consensus 193 ~~sk~g~avl~LQ~~LP~ARvvY~SATgasep~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~gGv~amE~vA~dlKa~G~ 272 (303)
T PF13872_consen 193 KPSKTGIAVLELQNRLPNARVVYASATGASEPRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKGGVGAMEMVAMDLKARGM 272 (303)
T ss_pred cccHHHHHHHHHHHhCCCCcEEEecccccCCCceeeeeeeccccCCCCCCCCHHHHHHHHHhcCchHHHHHHHHHHhcch
Confidence 1233346667789999998754433221111 122 2223334445555553
Q ss_pred cc-------cceeEEEeccCCHHHHHHHH
Q 010184 213 IA-------NVQCAEVWCPMTKEFFSEYL 234 (516)
Q Consensus 213 l~-------~~~~~~v~~~~~~~~~~~~l 234 (516)
.. .+++..+.+++++++..-|.
T Consensus 273 yiaR~LSf~gvef~~~e~~l~~~~~~~Yd 301 (303)
T PF13872_consen 273 YIARQLSFEGVEFEIEEVPLTPEQIKMYD 301 (303)
T ss_pred heeeecccCCceEEEEEecCCHHHHHHhc
Confidence 22 56778888899998887764
No 159
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.19 E-value=1.4e-09 Score=120.33 Aligned_cols=70 Identities=20% Similarity=0.149 Sum_probs=55.0
Q ss_pred CCCCCCCHHHHHHHHHHHhCC-CCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHH
Q 010184 21 KPHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
-+..++||.|.+.+..+.... ..+.+++-+|||+|||+.++.++... +++++|.++|..+.+|..++...
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhcc
Confidence 356789999999988765431 12358999999999999999877443 48999999999999998876543
No 160
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.11 E-value=3e-10 Score=115.22 Aligned_cols=329 Identities=13% Similarity=0.026 Sum_probs=191.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhh-CCCC--
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWS-TIQD-- 96 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~-~~~~-- 96 (516)
....+|.++++.+-++ ++.++.-.+.+||+++.-..+... ....+++.|+.+++.+..+.+.-.. .++.
T Consensus 286 ~~~~~~~~~~~~~~~G---~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K 362 (1034)
T KOG4150|consen 286 SGIAISLELLKFASEG---RADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARK 362 (1034)
T ss_pred chhhhhHHHHhhhhhc---ccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhh
Confidence 3456788888865443 377888999999998765444222 2468888888887776555443221 1111
Q ss_pred -CcEEEEeCCcc---cc-ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-------hHHH
Q 010184 97 -DQICRFTSDSK---ER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFRK 164 (516)
Q Consensus 97 -~~v~~~~~~~~---~~-~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------~~~~ 164 (516)
.-|..+.+... .. ......++.+.+.++....--.+...++ .+ .+..++++||+|.+..+ ..++
T Consensus 363 ~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~--~~--~~~~~~~~~~~~~Y~~~~~~~~~~~~R~ 438 (1034)
T KOG4150|consen 363 SAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNV--PV--FEELCKDTNSCALYLFPTKALAQDQLRA 438 (1034)
T ss_pred cceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhcccccc--HH--HHHHHhcccceeeeecchhhHHHHHHHH
Confidence 11222322211 11 1245778888888875531110000000 00 12247899999998754 4444
Q ss_pred HHhhccc------ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHH-hCCCcccceeEEEeccCCHHHHHHHHHhh
Q 010184 165 VISLTKS------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLV-KGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (516)
Q Consensus 165 ~l~~~~~------~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~-~~g~l~~~~~~~v~~~~~~~~~~~~l~~~ 237 (516)
++..++. -.++--++|...... ....++|-. ..+++ ..|--.......+|.|-.+...+.
T Consensus 439 L~~L~~~F~~~~~~~~~~~~~~~K~~~~---~~~~~~~~~-----E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~----- 505 (1034)
T KOG4150|consen 439 LSDLIKGFEASINMGVYDGDTPYKDRTR---LRSELANLS-----ELELVTIDGSPSSEKLFVLWNPSAPPTSKS----- 505 (1034)
T ss_pred HHHHHHHHHhhcCcceEeCCCCcCCHHH---HHHHhcCCc-----ceEEEEecCCCCccceEEEeCCCCCCcchh-----
Confidence 4444432 123333444432112 222333311 11111 123333334456665543211110
Q ss_pred hhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------------CceEecCCCHHHHHH
Q 010184 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGATSHVERTK 304 (516)
Q Consensus 238 ~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------------~~~i~g~~~~~eR~~ 304 (516)
++ .++......|+...- ..|-++|-||..+..++.+....+ +.-+.|+...++|.+
T Consensus 506 ---~~-------~~~i~E~s~~~~~~i-~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRK 574 (1034)
T KOG4150|consen 506 ---EK-------SSKVVEVSHLFAEMV-QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRK 574 (1034)
T ss_pred ---hh-------hhHHHHHHHHHHHHH-HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHH
Confidence 00 011122222222222 457899999999998887665542 234789999999999
Q ss_pred HHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcC
Q 010184 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (516)
Q Consensus 305 ~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (516)
+....-.| +..-+|+|++++.|||+-..|.|+++..|. |...+.|..||+||... ......++..
T Consensus 575 IE~~~F~G-~L~giIaTNALELGIDIG~LDAVl~~GFP~-S~aNl~QQ~GRAGRRNk-------------~SLavyva~~ 639 (1034)
T KOG4150|consen 575 IESDLFGG-KLCGIIATNALELGIDIGHLDAVLHLGFPG-SIANLWQQAGRAGRRNK-------------PSLAVYVAFL 639 (1034)
T ss_pred HHHHhhCC-eeeEEEecchhhhccccccceeEEEccCch-hHHHHHHHhccccccCC-------------CceEEEEEec
Confidence 99888887 899999999999999999999999997775 99999999999999663 2233336666
Q ss_pred CchhhhHHHHHHHHH
Q 010184 385 DTQEMFYSTKRQQFL 399 (516)
Q Consensus 385 ~t~e~~~~~~r~~~l 399 (516)
..++.+|...-...+
T Consensus 640 ~PVDQ~Y~~HP~~l~ 654 (1034)
T KOG4150|consen 640 GPVDQYYMSHPDKLF 654 (1034)
T ss_pred cchhhHhhcCcHHHh
Confidence 777877766555444
No 161
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.08 E-value=6.2e-09 Score=113.12 Aligned_cols=122 Identities=16% Similarity=0.082 Sum_probs=86.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRG 112 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~ 112 (516)
..++.+.+|+|||.+++.++.. .++.+||++|...|..|+.+.|+..|+ ...|.+++++.... ..+
T Consensus 162 ~~i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 162 RAVWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 3455555699999999988854 478999999999999999999999875 34688888865432 247
Q ss_pred CCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hH--HHH---HhhcccceEEEEeccCC
Q 010184 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF--RKV---ISLTKSHCKLGLTATLV 182 (516)
Q Consensus 113 ~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~--~~~---l~~~~~~~~l~LTATp~ 182 (516)
...|+|.|.+.+-. .+ .+.++||+||-|...-+ .| +.+ .........|+-||||.
T Consensus 240 ~~~IViGtRSAvFa-------------P~--~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 240 QARVVVGTRSAVFA-------------PV--EDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCcEEEEcceeEEe-------------cc--CCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 78999999976622 22 67899999999976522 11 111 11222334677799996
Q ss_pred C
Q 010184 183 R 183 (516)
Q Consensus 183 ~ 183 (516)
-
T Consensus 305 l 305 (665)
T PRK14873 305 A 305 (665)
T ss_pred H
Confidence 3
No 162
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.07 E-value=1.5e-08 Score=111.26 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=77.7
Q ss_pred ccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHH---HHHHHHHHhhCCCCCcEEEEeC-Cc---cccccCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQICRFTS-DS---KERFRGNA 114 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~---Qw~~e~~~~~~~~~~~v~~~~~-~~---~~~~~~~~ 114 (516)
+.|.-|.||-|||+++..++. ..++.|-||+..--|+. +|...+-.|+|++ |++... .. ..+-.-.+
T Consensus 184 G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLs---vg~i~~~~~~~~~rr~aY~~ 260 (1112)
T PRK12901 184 GKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS---VDCIDKHQPNSEARRKAYNA 260 (1112)
T ss_pred CceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCc---eeecCCCCCCHHHHHHhCCC
Confidence 458889999999999987663 34688888888887775 5999999999875 454433 11 11123468
Q ss_pred cEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 115 ~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
+|.-+|-..+....-|.+..... +.+-.+.+.+.|+||++.+.
T Consensus 261 DItYgTn~EfGFDYLRDnm~~~~-~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 261 DITYGTNNEFGFDYLRDNMAHSP-EDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred cceecCCCccccccchhccccch-HhhhCcCCceeEeechhhhh
Confidence 99999988887766555433222 22334678899999999873
No 163
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.05 E-value=6e-09 Score=104.40 Aligned_cols=283 Identities=17% Similarity=0.178 Sum_probs=150.2
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH----HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCC-CcEEE
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQICR 101 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~-~~v~~ 101 (516)
+.++.+-++.+.++. ..+++++||+|||.+.=.++ ....+.+..--|.++-+.+.......-.+..- ..|+.
T Consensus 49 w~~k~~F~~~l~~nQ---~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGy 125 (699)
T KOG0925|consen 49 WEQKEEFLKLLLNNQ---IIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGY 125 (699)
T ss_pred HHhHHHHHHHHhcCc---eEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhccc
Confidence 344444444434443 78899999999998643332 11224455555788777777766665332211 11111
Q ss_pred EeCCccccccC-CCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC-c-hh----HHHHHhhcccceE
Q 010184 102 FTSDSKERFRG-NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-A-HM----FRKVISLTKSHCK 174 (516)
Q Consensus 102 ~~~~~~~~~~~-~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~-~~----~~~~l~~~~~~~~ 174 (516)
... .+.-.+ ..-.-.+|-+||.. ..+..-.-..|+++|+||||.-. + .. ...++..-+.-..
T Consensus 126 sIr--fEdC~~~~T~Lky~tDgmLlr---------Eams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~ 194 (699)
T KOG0925|consen 126 SIR--FEDCTSPNTLLKYCTDGMLLR---------EAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKL 194 (699)
T ss_pred ccc--ccccCChhHHHHHhcchHHHH---------HHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceE
Confidence 000 000000 01111234444422 22222223689999999999743 2 22 2333333344578
Q ss_pred EEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchH
Q 010184 175 LGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (516)
Q Consensus 175 l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~ 253 (516)
+.+|||..- ..++.++|. .+... .| ..|++. -.+++.-+.|+ .
T Consensus 195 vvmSatl~a-----~Kfq~yf~n~Pll~v-------pg-~~PvEi-----~Yt~e~erDyl-E----------------- 238 (699)
T KOG0925|consen 195 VVMSATLDA-----EKFQRYFGNAPLLAV-------PG-THPVEI-----FYTPEPERDYL-E----------------- 238 (699)
T ss_pred EEeecccch-----HHHHHHhCCCCeeec-------CC-CCceEE-----EecCCCChhHH-H-----------------
Confidence 999999852 234455542 22111 12 223322 22333334444 1
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC--------------CceEecCCCHHHHHHHHHHHhc---C-CCc
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------KPMIYGATSHVERTKILQAFKC---S-RDL 315 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~--------------~~~i~g~~~~~eR~~~l~~F~~---~-~~~ 315 (516)
.++..+++.|......-++||-...+.++...+.+. +.-+| +.+.+++++--.. + ..-
T Consensus 239 aairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~R 314 (699)
T KOG0925|consen 239 AAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGR 314 (699)
T ss_pred HHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccc
Confidence 255556666543445679999998887777666652 11133 3333333322211 1 345
Q ss_pred cEEEEeCCCcccccccccCEEEEe------------------cCCCCCHHHHHHHhhcccccCCCcc
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQI------------------SSHAGSRRQEAQRLGRILRAKGKLE 364 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~------------------~~~~~s~~~~~Qr~GR~~R~g~~~~ 364 (516)
+|+|+|..+++.+.++.+-.||-- -++. |..+-.||.||+||..+|+.
T Consensus 315 kvVvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PI-SkasA~qR~gragrt~pGkc 380 (699)
T KOG0925|consen 315 KVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRTRPGKC 380 (699)
T ss_pred eEEEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccc-hHhHHHHHhhhccCCCCCce
Confidence 699999999999999887776621 1222 56666889999988886543
No 164
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.01 E-value=1.1e-07 Score=105.70 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=51.1
Q ss_pred CCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh----cC--CCEEEEEeChhhHHHHHHHHHH
Q 010184 25 QPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR----IK--KSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~----~~--~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
.+||.|.+.+..+... ..+..+++.+|||+|||++.+.++.. .+ .++++.+.|..=..|..+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 3599999999876543 22358999999999999988775532 22 4688888888878888899887
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.97 E-value=3.2e-08 Score=106.58 Aligned_cols=291 Identities=13% Similarity=0.116 Sum_probs=160.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
-.+|-+|||+|||...+.++... ..++|+|...++|+.+....|... ++++ -+.....+....-....+-+++.
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~g-Fv~Y~d~~~~~i~~~~~~rLivq 128 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLSG-FVNYLDSDDYIIDGRPYDRLIVQ 128 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCCc-ceeeeccccccccccccCeEEEE
Confidence 45777999999999888877654 579999999999999999988864 2322 12222222211111235677888
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHH-------H----hhc-ccceEEEEeccCCCCccch
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV-------I----SLT-KSHCKLGLTATLVREDERI 188 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~-------l----~~~-~~~~~l~LTATp~~~~~~~ 188 (516)
.++|.... ..+ -.+|++|||||+--+.+..|... . ..+ .+.++|.+-||... ...
T Consensus 129 IdSL~R~~----------~~~-l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~--~tv 195 (824)
T PF02399_consen 129 IDSLHRLD----------GSL-LDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND--QTV 195 (824)
T ss_pred ehhhhhcc----------ccc-ccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH--HHH
Confidence 88885531 111 14699999999965544322111 1 111 36788999999842 111
Q ss_pred hhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhh-hHHHH----------HHhhhCcchHHHHH
Q 010184 189 TDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN-SKKKQ----------ALYVMNPNKFRACE 257 (516)
Q Consensus 189 ~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~-~~~~~----------~l~~~~~~k~~~~~ 257 (516)
.-+..+-|..-...-+.+....|+.. -.|..... +..+.....++... ..... .-............
T Consensus 196 dFl~~~Rp~~~i~vI~n~y~~~~fs~-R~~~~~~~-l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~ 273 (824)
T PF02399_consen 196 DFLASCRPDENIHVIVNTYASPGFSN-RRCTFLRS-LGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFS 273 (824)
T ss_pred HHHHHhCCCCcEEEEEeeeecCCccc-ceEEEecc-cCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHH
Confidence 12222223222222222333223322 12222221 22222222221000 00000 00000112223455
Q ss_pred HHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccc
Q 010184 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (516)
Q Consensus 258 ~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~ 332 (516)
.|.... ..|+++-|||.++..++.+++... +.+++|..+..+ + +. -.+.+|++=|.+...|+++-.
T Consensus 274 ~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~---W~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 274 ELLARL--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ES---WKKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-cc---ccceeEEEEeceEEEEeccch
Confidence 555555 468899999999999888887762 334566555442 2 22 257899999999999998865
Q ss_pred c--CEEEEe-cC--CCCCHHHHHHHhhcccccCC
Q 010184 333 A--NVIIQI-SS--HAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 333 a--~~vI~~-~~--~~~s~~~~~Qr~GR~~R~g~ 361 (516)
. +-++.+ .+ ...+.....|++||+-....
T Consensus 345 ~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 345 KHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred hhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 4 334433 12 11244567999999976663
No 166
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.95 E-value=1.6e-08 Score=103.78 Aligned_cols=166 Identities=17% Similarity=0.242 Sum_probs=103.6
Q ss_pred EEecCCCcHHHHHHHHHHhcC----CCEEEEEeChhhHHHHHHHHHH-----hh-----CCCCCcEEEEeCCccccccCC
Q 010184 48 IVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKL-----WS-----TIQDDQICRFTSDSKERFRGN 113 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~e~~~-----~~-----~~~~~~v~~~~~~~~~~~~~~ 113 (516)
..|+||+|||+++..+|..+- +.+|+.|....+++-....|.. ++ .+.+..+.+-.-..-....+.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 468999999999998886542 5799999998877776655532 21 111222211111111113556
Q ss_pred CcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-------------hHHHHHh----hcccceEEE
Q 010184 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------------MFRKVIS----LTKSHCKLG 176 (516)
Q Consensus 114 ~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------------~~~~~l~----~~~~~~~l~ 176 (516)
..|++||.+.|.....|..+..-.++.+...+. +++-|||||+.+. .|..++. .-+..-.|.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~kl-vfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKL-VFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCce-EEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 789999999998876665555555666644443 5666999999753 2322222 123345677
Q ss_pred EeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccce
Q 010184 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQ 217 (516)
Q Consensus 177 LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~ 217 (516)
+|||-..+... ...+-..+++.+++.+..+.|+..++.
T Consensus 161 f~at~~k~k~v---~~ky~dkiv~~y~lk~f~e~gytk~i~ 198 (812)
T COG3421 161 FSATIPKEKSV---EDKYEDKIVVTYTLKQFSEDGYTKNIY 198 (812)
T ss_pred hhhcCCccccH---HHHhccceEEeeeHHHhhhhcchhhhh
Confidence 88887743332 223445567788888888888876654
No 167
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.94 E-value=9.6e-09 Score=109.41 Aligned_cols=139 Identities=12% Similarity=0.070 Sum_probs=85.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC-----CCEEEEEeChhhHHHHH-------HHH-HHhhCCCCCcEEEEeC-Ccccc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWA-------FQF-KLWSTIQDDQICRFTS-DSKER 109 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~-------~e~-~~~~~~~~~~v~~~~~-~~~~~ 109 (516)
-++=|.|+||+|||.+++-.+-.+. -+++||||+.++.+-.. ++| .....-......++.. ..+..
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~ 154 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFK 154 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHh
Confidence 3567889999999999998775542 48999999998765522 333 2211111122222321 11111
Q ss_pred --ccCCCcEEEEchhhhhccCCCChh--------------HHHHHHHHccCCccEEEEccCccCCc--hhHHHHHhhccc
Q 010184 110 --FRGNAGVVVTTYNMVAFGGKRSEE--------------SEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS 171 (516)
Q Consensus 110 --~~~~~~IvV~T~~~l~~~~~r~~~--------------~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~l~~~~~ 171 (516)
-.+.+.|++.|.+.+......... +...++.+...++ +||+||-|++.. ..|. .+..+.+
T Consensus 155 ~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~~k~~~-~i~~l~p 232 (985)
T COG3587 155 FKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGDDKTYG-AIKQLNP 232 (985)
T ss_pred hccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccchHHHH-HHHhhCc
Confidence 135678888888877665111100 1223344444444 899999999998 3555 5566778
Q ss_pred ceEEEEeccCCCC
Q 010184 172 HCKLGLTATLVRE 184 (516)
Q Consensus 172 ~~~l~LTATp~~~ 184 (516)
.+.|-++||-...
T Consensus 233 l~ilRfgATfkd~ 245 (985)
T COG3587 233 LLILRFGATFKDE 245 (985)
T ss_pred eEEEEecccchhh
Confidence 8899999998653
No 168
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.85 E-value=8.3e-08 Score=105.75 Aligned_cols=268 Identities=16% Similarity=0.193 Sum_probs=156.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc--CCCEEEEEeChhhHHH----HHHHHHHhhCCCCCcEEEEeCCcccc--ccCCCc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQ----WAFQFKLWSTIQDDQICRFTSDSKER--FRGNAG 115 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Q----w~~e~~~~~~~~~~~v~~~~~~~~~~--~~~~~~ 115 (516)
++.++.+|+|+|||.+|-.++... ..+++.++|.-+++.- |...|.+. .+..+...+|+..-. +....+
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~---~G~~~~~l~ge~s~~lkl~~~~~ 1236 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKL---LGLRIVKLTGETSLDLKLLQKGQ 1236 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccc---cCceEEecCCccccchHHhhhcc
Confidence 588999999999999999888664 3689999999877655 44444443 344667777765422 235578
Q ss_pred EEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---------hHHHHHhhc-ccceEEEEeccCCCCc
Q 010184 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------MFRKVISLT-KSHCKLGLTATLVRED 185 (516)
Q Consensus 116 IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---------~~~~~l~~~-~~~~~l~LTATp~~~~ 185 (516)
|+|+|++.+... .. -...++.|.||.|.+.+- ..+.+...+ +.-+.++||-......
T Consensus 1237 vii~tpe~~d~l-----------q~--iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~ 1303 (1674)
T KOG0951|consen 1237 VIISTPEQWDLL-----------QS--IQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANAR 1303 (1674)
T ss_pred eEEechhHHHHH-----------hh--hhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccch
Confidence 999999877442 22 256789999999999842 222233333 3335677776655332
Q ss_pred cchhhhHhhhCC---ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHH
Q 010184 186 ERITDLNFLIGP---KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRF 262 (516)
Q Consensus 186 ~~~~~l~~~~gp---~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~ 262 (516)
+. +|- .+++.... .-..|.......+..+ .+-...+ .|.. .....+.+
T Consensus 1304 d~-------ig~s~~~v~Nf~p~-----~R~~Pl~i~i~~~~~~-~~~~~~~------------am~~---~~~~ai~~- 1354 (1674)
T KOG0951|consen 1304 DL-------IGASSSGVFNFSPS-----VRPVPLEIHIQSVDIS-HFESRML------------AMTK---PTYTAIVR- 1354 (1674)
T ss_pred hh-------ccccccceeecCcc-----cCCCceeEEEEEeccc-hhHHHHH------------Hhhh---hHHHHHHH-
Confidence 22 221 11111000 0011222111111111 1111111 0110 02222333
Q ss_pred HhhcCCCeEEEEeccHHHHHHHHHHh---------------------------CCceEecCCCHHHHHHHHHHHhcCCCc
Q 010184 263 HEQQRGDKIIVFADNLFALTEYAMKL---------------------------RKPMIYGATSHVERTKILQAFKCSRDL 315 (516)
Q Consensus 263 ~~~~~~~k~iVF~~~~~~~~~l~~~L---------------------------~~~~i~g~~~~~eR~~~l~~F~~~~~~ 315 (516)
|. ..++..+||.+..+++..++..| ...+-|-+++..+..-+-.-|..| .+
T Consensus 1355 ~a-~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g-~i 1432 (1674)
T KOG0951|consen 1355 HA-GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG-AI 1432 (1674)
T ss_pred Hh-cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC-cE
Confidence 33 45778999999999888777655 011225556666666666777776 89
Q ss_pred cEEEEeCCCcccccccccCEEEEe-----c------CCCCCHHHHHHHhhcccccCC
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQI-----S------SHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~-----~------~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.|+|.+.- -.|+-+. ++.||.+ + .++ +-....|+.|+++|+|.
T Consensus 1433 ~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y-~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1433 QVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDY-PIAELLQMVGLASGAGK 1486 (1674)
T ss_pred EEEEEEcc-ccccccc-ceEEEEecceeecccccccccC-chhHHHHHhhhhcCCcc
Confidence 98888755 6777774 5544432 1 122 45667999999999883
No 169
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.75 E-value=8.5e-08 Score=101.06 Aligned_cols=257 Identities=17% Similarity=0.169 Sum_probs=150.6
Q ss_pred CCCCCCCCHHHHHHHHHHHhC------CCCccc-EEEecCCCcH--HHHHHHHHHhcC--CCEEEEEeChhhHHHHHHHH
Q 010184 20 LKPHAQPRPYQEKSLSKMFGN------GRARSG-IIVLPCGAGK--SLVGVSAACRIK--KSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~------~~~~~~-il~~~tG~GK--Tl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
......|..-|.+|+--.-+. ...|.| +|-+..|.|| |+.++.+-..++ +++||+.-++.|-..-.+.+
T Consensus 259 ~i~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL 338 (1300)
T KOG1513|consen 259 SIDSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDL 338 (1300)
T ss_pred cCcccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhch
Confidence 344567889999998754321 122344 4444455555 556665555554 78999999999999988988
Q ss_pred HHhhCCCCCcEEEEe--------CCccccccCCCcEEEEchhhhhccCC-----CChhHHHHHHHHccCCccEEEEccCc
Q 010184 89 KLWSTIQDDQICRFT--------SDSKERFRGNAGVVVTTYNMVAFGGK-----RSEESEKIIEEIRNREWGLLLMDEVH 155 (516)
Q Consensus 89 ~~~~~~~~~~v~~~~--------~~~~~~~~~~~~IvV~T~~~l~~~~~-----r~~~~~~~~~~l~~~~~~~vIlDEaH 155 (516)
+.. +.+.+.|..+. +.... .-..+|+++||..|..... ....+.++++|+....-|+||+||||
T Consensus 339 ~Di-gA~~I~V~alnK~KYakIss~en~--n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECH 415 (1300)
T KOG1513|consen 339 RDI-GATGIAVHALNKFKYAKISSKENT--NTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECH 415 (1300)
T ss_pred hhc-CCCCccceehhhcccccccccccC--CccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhh
Confidence 875 44444443322 22211 2246799999998865422 22345677788866666899999999
Q ss_pred cCCch-------------hHHHHHhhcccceEEEEeccCCCCccchhhhH--hhhCCcc-------------------cc
Q 010184 156 VVPAH-------------MFRKVISLTKSHCKLGLTATLVREDERITDLN--FLIGPKL-------------------YE 201 (516)
Q Consensus 156 ~~~~~-------------~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~--~~~gp~~-------------------~~ 201 (516)
..++- +.-.+-+.++..+++.-|||-..+.....-+. -+.|+.. .+
T Consensus 416 kAKNL~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGvGAME 495 (1300)
T KOG1513|consen 416 KAKNLVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGVGAME 495 (1300)
T ss_pred hhcccccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhhhhhhhccccCCCcCccHHHHHHHHHhcCCceee
Confidence 98861 23334456677888999999654433322111 1223221 12
Q ss_pred ccHHHHHhCC-Cc------ccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEE
Q 010184 202 ANWLDLVKGG-FI------ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (516)
Q Consensus 202 ~~~~~l~~~g-~l------~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF 274 (516)
.-.+++.-.| || ..+.+....++++.+|..-|. . ...++...-+||.....++.... +-.| .++
T Consensus 496 IVAMDMK~rGmYiARQLSFkgVsFrieEv~ls~eF~k~Yn-~-----a~~LW~ea~~kFq~a~e~m~~E~--R~~K-t~w 566 (1300)
T KOG1513|consen 496 IVAMDMKLRGMYIARQLSFKGVSFRIEEVPLSKEFRKVYN-R-----AAELWAEALNKFQQAAELMDLES--RTCK-TLW 566 (1300)
T ss_pred eeehhhhhhhhhhhhhccccCceEEEEecccCHHHHHHHH-H-----HHHHHHHHHHHHHHHHHHhhhHH--HHhh-hHH
Confidence 2222332222 22 256677788899999998887 2 23344555566666666664432 2222 345
Q ss_pred eccHHHHHHHHHHh
Q 010184 275 ADNLFALTEYAMKL 288 (516)
Q Consensus 275 ~~~~~~~~~l~~~L 288 (516)
+++-..-+.+.++|
T Consensus 567 gQFWsaHQRFFKyL 580 (1300)
T KOG1513|consen 567 GQFWSAHQRFFKYL 580 (1300)
T ss_pred HHhHHHHHHHHHHH
Confidence 55544444444433
No 170
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.63 E-value=1.3e-07 Score=101.63 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=60.3
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----CCc-eEecCCCHHHHHHHHHHHhcC---CCccEEEEeCCCcc
Q 010184 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKP-MIYGATSHVERTKILQAFKCS---RDLNTIFLSKVGDN 326 (516)
Q Consensus 255 ~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----~~~-~i~g~~~~~eR~~~l~~F~~~---~~~~vLv~t~~~~~ 326 (516)
++..+.+... ..+.+++|.+.+...++.+++.| ..+ ++.|+.+ .|..++++|++. +.-.|||+|...-+
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 4555566665 45557888777888888888777 233 4566543 567789999984 35789999999999
Q ss_pred cccc----------cccCEEEEecCCC
Q 010184 327 SIDI----------PEANVIIQISSHA 343 (516)
Q Consensus 327 GlDl----------p~a~~vI~~~~~~ 343 (516)
|+|+ ..+.+||+..-|+
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCC
Confidence 9999 2356777763343
No 171
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=98.62 E-value=6.5e-08 Score=107.02 Aligned_cols=151 Identities=13% Similarity=0.108 Sum_probs=101.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---------------------CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---------------------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---------------------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~ 102 (516)
..++.+.++|.|||..-+.....- -+.+|||||.. +..||..|+.++.... ..|..|
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~-lKv~~Y 452 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSL-LKVLLY 452 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhcccc-ceEEEE
Confidence 356888999999998776544110 15699999976 7999999999985432 467777
Q ss_pred eCCccccc-----cCCCcEEEEchhhhhccCCCC--hhHHHHHHH----------HccCCccEEEEccCccCCch--hHH
Q 010184 103 TSDSKERF-----RGNAGVVVTTYNMVAFGGKRS--EESEKIIEE----------IRNREWGLLLMDEVHVVPAH--MFR 163 (516)
Q Consensus 103 ~~~~~~~~-----~~~~~IvV~T~~~l~~~~~r~--~~~~~~~~~----------l~~~~~~~vIlDEaH~~~~~--~~~ 163 (516)
-|-.+..+ -.+++||+|||+.|+...... ....+.+.. |....|--|++|||+.+... ...
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a 532 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAA 532 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHH
Confidence 66543221 246899999999998764322 001111111 11234557999999999864 445
Q ss_pred HHHhhcccceEEEEeccCCCCccchhhhHhhhC
Q 010184 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIG 196 (516)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g 196 (516)
+.+..+.+..+.+.||||.+.-+....|.++++
T Consensus 533 ~M~~rL~~in~W~VTGTPiq~Iddl~~Ll~fLk 565 (1394)
T KOG0298|consen 533 EMVRRLHAINRWCVTGTPIQKIDDLFPLLEFLK 565 (1394)
T ss_pred HHHHHhhhhceeeecCCchhhhhhhHHHHHHhc
Confidence 667778888999999999987444444444443
No 172
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.60 E-value=2.8e-07 Score=100.10 Aligned_cols=127 Identities=17% Similarity=0.193 Sum_probs=81.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHH---HHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~---Qw~~e~~~~~~~~~~~ 98 (516)
.+|||=.+-+..+.-.. +.|.-+-||-|||+++..++. -.++.+.+|+..--|+. .|...+-.|++++
T Consensus 78 g~~~~dVQliG~i~lh~---g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls--- 151 (822)
T COG0653 78 GMRHFDVQLLGGIVLHL---GDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS--- 151 (822)
T ss_pred CCChhhHHHhhhhhhcC---CceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc---
Confidence 34555333333333322 568899999999999998773 34688888888776654 4888888888774
Q ss_pred EEEEeCCccc---cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 99 ICRFTSDSKE---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 99 v~~~~~~~~~---~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
|++...+... +-.-.++|.-+|.+.+-...-|.+.....-+.. .+...+.|+||++.+.
T Consensus 152 vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~v-qr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKV-QRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhh-hccCCeEEEcchhhee
Confidence 5554443321 112358899999888877655544322222222 3467789999998764
No 173
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.57 E-value=3.5e-06 Score=93.43 Aligned_cols=65 Identities=9% Similarity=-0.052 Sum_probs=42.1
Q ss_pred CCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHHHHhhc----ccceEEEEeccCCCC
Q 010184 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT----KSHCKLGLTATLVRE 184 (516)
Q Consensus 112 ~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~~----~~~~~l~LTATp~~~ 184 (516)
...+|+++|++.+..+.-. ..+.-..+..+|+||||++... .+.=+++.+ +...+.+||+.|..-
T Consensus 6 ~~ggi~~~T~rIl~~DlL~--------~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 6 LEGGIFSITSRILVVDLLT--------GIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAF 75 (814)
T ss_pred hcCCEEEEechhhHhHHhc--------CCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCccc
Confidence 3467999999988664211 1122245679999999999754 222222222 455799999999753
No 174
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.51 E-value=6.5e-07 Score=85.39 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=48.6
Q ss_pred CCCHHHHHHHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhc-----------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 25 QPRPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI-----------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~-----------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
+|.+.|.+|+..++... . ++|.+|+|+|||.+...++..+ ++++||++|+...+++..+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~---~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSN---GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSS---E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCC---CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47789999999888875 5 8999999999997665554333 36899999999999999988887
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.37 E-value=1.8e-06 Score=80.02 Aligned_cols=143 Identities=13% Similarity=0.175 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---C--CCEEEEEeChhhHHHHH--------HHHHHhh
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K--KSCLCLATNAVSVDQWA--------FQFKLWS 92 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~--~~~Lvl~P~~~L~~Qw~--------~e~~~~~ 92 (516)
..+.|..+++.++... ..++.+|.|+|||+.+++.+... + .+++++-|.... .++. +.+.-|+
T Consensus 5 ~~~~Q~~~~~al~~~~---~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-~~~lGflpG~~~eK~~p~~ 80 (205)
T PF02562_consen 5 KNEEQKFALDALLNND---LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-GEDLGFLPGDLEEKMEPYL 80 (205)
T ss_dssp -SHHHHHHHHHHHH-S---EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-T----SS---------TTT
T ss_pred CCHHHHHHHHHHHhCC---eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-ccccccCCCCHHHHHHHHH
Confidence 4678999999998654 78888999999999999877543 2 467777776542 1111 1111111
Q ss_pred CCCCCcEEE-EeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhccc
Q 010184 93 TIQDDQICR-FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (516)
Q Consensus 93 ~~~~~~v~~-~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~ 171 (516)
.--.+.... +....-+.+.....|-+.....++.. .....+||+|||+.+.......++..+..
T Consensus 81 ~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGr---------------t~~~~~iIvDEaQN~t~~~~k~ilTR~g~ 145 (205)
T PF02562_consen 81 RPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGR---------------TFDNAFIIVDEAQNLTPEELKMILTRIGE 145 (205)
T ss_dssp HHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-----------------B-SEEEEE-SGGG--HHHHHHHHTTB-T
T ss_pred HHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCc---------------cccceEEEEecccCCCHHHHHHHHcccCC
Confidence 000000000 00111111123355667666655442 12347999999999999999999999999
Q ss_pred ceEEEEeccCCCCccc
Q 010184 172 HCKLGLTATLVREDER 187 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~ 187 (516)
.+++.++|=|.+.|..
T Consensus 146 ~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 146 GSKIIITGDPSQIDLP 161 (205)
T ss_dssp T-EEEEEE--------
T ss_pred CcEEEEecCceeecCC
Confidence 9999999999876554
No 176
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.31 E-value=1.4e-06 Score=84.11 Aligned_cols=148 Identities=18% Similarity=0.171 Sum_probs=88.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHH---HHHHHHHhhCCCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQ---WAFQFKLWSTIQD 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Q---w~~e~~~~~~~~~ 96 (516)
...|++-|.-+.-.+.. +-+..+.||-|||+++..++ +-.+++|-|++.+..|+.. |...|-+++++
T Consensus 75 g~~p~~vQll~~l~L~~-----G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl-- 147 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHK-----GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL-- 147 (266)
T ss_dssp S----HHHHHHHHHHHT-----TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT---
T ss_pred CCcccHHHHhhhhhccc-----ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh--
Confidence 35667778877765533 34999999999999987655 2346889999999999876 44555555555
Q ss_pred CcEEEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-------------
Q 010184 97 DQICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------------- 160 (516)
Q Consensus 97 ~~v~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------------- 160 (516)
.++...++.... -.-.++|+-+|...+....-|.+.... ......+.+.++|+||++.+.-.
T Consensus 148 -sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~-~~~~~~r~~~~~ivDEvDs~LiDea~~pl~is~~Ke 225 (266)
T PF07517_consen 148 -SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALS-KNEQVQRGFDFAIVDEVDSILIDEARTPLIISGAKE 225 (266)
T ss_dssp --EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SS-GGG--SSSSSEEEECTHHHHTTTGCCSEEEEEEHHT
T ss_pred -ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhc-cchhccCCCCEEEEeccceEEEecCccccccccccc
Confidence 677776654321 012367999998877653111000000 00111367889999999875410
Q ss_pred --------------hHHHHHhhcccceEEEEeccC
Q 010184 161 --------------MFRKVISLTKSHCKLGLTATL 181 (516)
Q Consensus 161 --------------~~~~~l~~~~~~~~l~LTATp 181 (516)
+++..++.++ ...|||||-
T Consensus 226 ~~~i~~~~~t~a~is~q~~f~~Y~--~l~GmTGTa 258 (266)
T PF07517_consen 226 GLKITPESLTLASISYQNFFRLYP--KLSGMTGTA 258 (266)
T ss_dssp TS----SEEEEEEEEHHHHHTTSS--EEEEEESST
T ss_pred CCccCCCCeEEEEeehHHHHHhcc--hheeeCCCC
Confidence 4555566543 388999994
No 177
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.30 E-value=7.8e-06 Score=76.12 Aligned_cols=128 Identities=18% Similarity=0.253 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
+|.+-|.+++..++.++. +-.+|.++.|+|||.+...++ ...+.++++++||...+....+. .+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~----~~~~------ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK----TGIE------ 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH----HTS-------
T ss_pred CCCHHHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh----hCcc------
Confidence 478899999999987642 367888999999998765543 33468999999999866654443 2211
Q ss_pred EeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhccc-ceEEEEecc
Q 010184 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKLGLTAT 180 (516)
Q Consensus 102 ~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~-~~~l~LTAT 180 (516)
..|...+............ .. .....++||||+-.+....+..++..+.. ..+|.|.|-
T Consensus 70 ----------------a~Ti~~~l~~~~~~~~~~~--~~--~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 70 ----------------AQTIHSFLYRIPNGDDEGR--PE--LPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp ----------------EEEHHHHTTEECCEECCSS--CC---TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-
T ss_pred ----------------hhhHHHHHhcCCccccccc--cc--CCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECC
Confidence 2222222211110000000 00 14457999999999999999988888766 678888888
Q ss_pred CCC
Q 010184 181 LVR 183 (516)
Q Consensus 181 p~~ 183 (516)
|.+
T Consensus 130 ~~Q 132 (196)
T PF13604_consen 130 PNQ 132 (196)
T ss_dssp TTS
T ss_pred cch
Confidence 764
No 178
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.19 E-value=6.3e-06 Score=91.23 Aligned_cols=64 Identities=22% Similarity=0.237 Sum_probs=50.1
Q ss_pred CCCCCCHHHHHHHHHH---HhCC---CCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHH
Q 010184 22 PHAQPRPYQEKSLSKM---FGNG---RARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWA 85 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~---~~~~---~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~ 85 (516)
+.++.||-|.+.+..+ +..+ ..+.+++-+|||+|||+.++.++. ..+++++|-+.|+.|-+|..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4689999999976655 4432 124688899999999999987653 35789999999999998864
No 179
>PRK10536 hypothetical protein; Provisional
Probab=98.12 E-value=4.5e-06 Score=79.59 Aligned_cols=147 Identities=13% Similarity=0.114 Sum_probs=85.3
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c-C--CCEEEEE-eChhhHHH--------HHHH
Q 010184 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-K--KSCLCLA-TNAVSVDQ--------WAFQ 87 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-~--~~~Lvl~-P~~~L~~Q--------w~~e 87 (516)
.+-......|...+..+.... ..++.+|+|+|||+.+++++.. + . ...++|+ |... +.+ ..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~---lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~-~ge~LGfLPG~~~eK 130 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQ---LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ-ADEDLGFLPGDIAEK 130 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCC---eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC-chhhhCcCCCCHHHH
Confidence 333456677888888776543 7888899999999999987753 2 2 2334443 3322 111 1122
Q ss_pred HHHhhCCCCCcEEEEeC-Cccccc--cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH
Q 010184 88 FKLWSTIQDDQICRFTS-DSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (516)
Q Consensus 88 ~~~~~~~~~~~v~~~~~-~~~~~~--~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~ 164 (516)
+..|+.---+....+.+ +.-+.+ .....|-|.....++.. ...-++||+|||+.+.......
T Consensus 131 ~~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr---------------tl~~~~vIvDEaqn~~~~~~k~ 195 (262)
T PRK10536 131 FAPYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR---------------TFENAVVILDEAQNVTAAQMKM 195 (262)
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC---------------cccCCEEEEechhcCCHHHHHH
Confidence 22221000000000001 100101 11234555554444331 1223799999999999999999
Q ss_pred HHhhcccceEEEEeccCCCCcc
Q 010184 165 VISLTKSHCKLGLTATLVREDE 186 (516)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~ 186 (516)
++..+....++.++|-|.+.|.
T Consensus 196 ~ltR~g~~sk~v~~GD~~QiD~ 217 (262)
T PRK10536 196 FLTRLGENVTVIVNGDITQCDL 217 (262)
T ss_pred HHhhcCCCCEEEEeCChhhccC
Confidence 9999999999999999987664
No 180
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.09 E-value=1.1e-05 Score=84.22 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
-+|...|..|++..+++. -.+|.+|+|+|||.+..+++.++ ..++||++|+..-++|..+.+.+-
T Consensus 409 pkLN~SQ~~AV~~VL~rp---lsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhhchHHHHHHHHHHcCC---ceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 478899999999999986 78999999999999988877554 589999999999999999888763
No 181
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.97 E-value=3.9e-05 Score=66.19 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=64.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc--------CCCEEEEE-eChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLA-TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~-P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (516)
+.++|.+|+|+|||.++-.++... ..+++.+. |...-...+..++...++.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 478899999999999998887654 33444333 33333455666666654443221
Q ss_pred cEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccC-CchhHHHHHhhc-ccceEEEEeccCC
Q 010184 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAHMFRKVISLT-KSHCKLGLTATLV 182 (516)
Q Consensus 115 ~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~-~~~~~~~~l~~~-~~~~~l~LTATp~ 182 (516)
-.+...+ ...+.+.+......+|||||+|++ ....+..+.... .....+.|+|||.
T Consensus 69 ---~~~~~~l---------~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---RQTSDEL---------RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ---TS-HHHH---------HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ---cCCHHHH---------HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 0011111 133344554455579999999998 655555443332 4556799999993
No 182
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.90 E-value=3.8e-05 Score=80.02 Aligned_cols=65 Identities=26% Similarity=0.221 Sum_probs=54.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHH
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
...|-+-|..|+....++. .-.+|.+|+|+|||.+-..++.+ .++++||.+||.+.+++..+.+.
T Consensus 183 ~~~ln~SQk~Av~~~~~~k--~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINNK--DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CccccHHHHHHHHHHhccC--CceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3568889999999877764 37899999999999988877755 36899999999999999888654
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.89 E-value=7.6e-05 Score=69.95 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=88.5
Q ss_pred ccccCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCC-EEEEEeChhhHHHHHHHHHHh
Q 010184 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKS-CLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 16 ~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~-~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+-+++..++.+||-|.+...+|.+...+.+.+..+-||.|||-+.+-+++. -+++ +-++|| +.|..|..+.+...
T Consensus 14 Ll~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 14 LLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHH
Confidence 456677889999999999999998644568899999999999887654322 2344 455555 56999999888764
Q ss_pred h-CCCCCcEEEEeCCcccc---------------ccCCCcEEEEchhhhhccC-C--------CC---hhHHHHHHHHcc
Q 010184 92 S-TIQDDQICRFTSDSKER---------------FRGNAGVVVTTYNMVAFGG-K--------RS---EESEKIIEEIRN 143 (516)
Q Consensus 92 ~-~~~~~~v~~~~~~~~~~---------------~~~~~~IvV~T~~~l~~~~-~--------r~---~~~~~~~~~l~~ 143 (516)
+ ++-+..|..+.-+.... .....+|+++||+.+.+.. + .. ....+...++.
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~- 171 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD- 171 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Confidence 4 33333444332211100 1245779999998775531 1 00 11122223332
Q ss_pred CCccEEEEccCccCCc
Q 010184 144 REWGLLLMDEVHVVPA 159 (516)
Q Consensus 144 ~~~~~vIlDEaH~~~~ 159 (516)
+-..-|+||+|...+
T Consensus 172 -~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 172 -EHSRDILDESDEILS 186 (229)
T ss_pred -hcCCeEeECchhccC
Confidence 234568999998744
No 184
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.89 E-value=8e-05 Score=67.48 Aligned_cols=92 Identities=18% Similarity=0.300 Sum_probs=63.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhCC-------ceEecCCCHHHHHHHHHHHhcCCCccEEEEeC--CCcccccccc--cC
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLRK-------PMIYGATSHVERTKILQAFKCSRDLNTIFLSK--VGDNSIDIPE--AN 334 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~~-------~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~--~~~~GlDlp~--a~ 334 (516)
..+.+++||+++...++.+.+.+.. .++.- ...++.+++++|+.+ +-.+|+++. ...+|+|+|+ +.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~-~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG-EGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS-SSEEEEEETTSCCGSSS--ECESEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc-cCeEEEEEecccEEEeecCCCchhh
Confidence 4567999999999999999999853 33333 245788999999997 777999987 8999999996 44
Q ss_pred EEEEecCCCCCH---H--------------------------HHHHHhhcccccC
Q 010184 335 VIIQISSHAGSR---R--------------------------QEAQRLGRILRAK 360 (516)
Q Consensus 335 ~vI~~~~~~~s~---~--------------------------~~~Qr~GR~~R~g 360 (516)
+||+..-|+.++ . ...|++||+-|..
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~ 138 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSE 138 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--ST
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceecc
Confidence 677663333222 1 1289999999977
No 185
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.89 E-value=7.8e-05 Score=80.58 Aligned_cols=141 Identities=12% Similarity=0.060 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----C----CCEEEEEeChhhHHHHHHHHHHhhC-CCCCc
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K----KSCLCLATNAVSVDQWAFQFKLWST-IQDDQ 98 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~----~~~Lvl~P~~~L~~Qw~~e~~~~~~-~~~~~ 98 (516)
++|+.|+..++.++ -.+|.++.|+|||.+...++..+ . .++++.+||.--+....+.+..... ++.
T Consensus 148 ~~Qk~A~~~al~~~---~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~-- 222 (586)
T TIGR01447 148 NWQKVAVALALKSN---FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA-- 222 (586)
T ss_pred HHHHHHHHHHhhCC---eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc--
Confidence 79999999888875 88999999999998766544221 1 3699999998756665555543211 100
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEe
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LT 178 (516)
... ......+-..|...+............. .-+...+++|||||+-++..+.+..++..++...+|.|.
T Consensus 223 ----~~~----~~~~~~~~a~TiHrlLg~~~~~~~~~~~--~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlv 292 (586)
T TIGR01447 223 ----AEA----LIAALPSEAVTIHRLLGIKPDTKRFRHH--ERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILL 292 (586)
T ss_pred ----chh----hhhccccccchhhhhhcccCCcchhhhc--ccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEE
Confidence 000 0001123355655554432211110000 111245789999999999999999999999888889998
Q ss_pred ccCCC
Q 010184 179 ATLVR 183 (516)
Q Consensus 179 ATp~~ 183 (516)
|=+.+
T Consensus 293 GD~~Q 297 (586)
T TIGR01447 293 GDKNQ 297 (586)
T ss_pred CChhh
Confidence 87643
No 186
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.89 E-value=4e-05 Score=75.84 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHH----hcCC-----CEEEEEeChhhHHHHHHHHH
Q 010184 22 PHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~-----~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
+.+++||.|.+.++.+. ..+ ..+++.+|||+|||+.++.++. ..+. +++|.+++..+..|-..+++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 45667999999776653 333 4899999999999999887652 2233 79999999998888878877
Q ss_pred Hh
Q 010184 90 LW 91 (516)
Q Consensus 90 ~~ 91 (516)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 64
No 187
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.89 E-value=4e-05 Score=75.84 Aligned_cols=68 Identities=18% Similarity=0.305 Sum_probs=52.7
Q ss_pred CCCCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHH----hcCC-----CEEEEEeChhhHHHHHHHHH
Q 010184 22 PHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~-----~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
+.+++||.|.+.++.+. ..+ ..+++.+|||+|||+.++.++. ..+. +++|.+++..+..|-..+++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 45667999999776653 333 4899999999999999887652 2233 79999999998888878877
Q ss_pred Hh
Q 010184 90 LW 91 (516)
Q Consensus 90 ~~ 91 (516)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 64
No 188
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.87 E-value=0.00024 Score=79.04 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=84.9
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcC--CCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~--~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
..+.|.+.|.+|+..+..++ -.+|.++.|+|||.+.-.++ ...+ .++++++||...+.. +..-++.+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~---~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~----L~e~~g~~a 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHK---VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKR----LGEVTGLTA 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHH----HHHhcCCcc
Confidence 45789999999999887654 78999999999998765544 3344 678889999874543 333222211
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEE
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~ 176 (516)
.|...+........ .....+. ....+++|+||++.+....+..++..++...+|.
T Consensus 393 ----------------------~Tih~lL~~~~~~~-~~~~~~~--~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTF-RHNHLED--PIDCDLLIVDESSMMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred ----------------------ccHHHHhhccCCcc-chhhhhc--cccCCEEEEeccccCCHHHHHHHHHhCCCCCEEE
Confidence 12222221110000 0000110 1456899999999999999999999888778888
Q ss_pred EeccCCC
Q 010184 177 LTATLVR 183 (516)
Q Consensus 177 LTATp~~ 183 (516)
|-|=|.+
T Consensus 448 lvGD~~Q 454 (720)
T TIGR01448 448 LVGDTDQ 454 (720)
T ss_pred EECcccc
Confidence 8776643
No 189
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.87 E-value=1.4e-05 Score=89.19 Aligned_cols=110 Identities=20% Similarity=0.318 Sum_probs=88.6
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhC---C-ceEecCCCHHHHHHHHHHHhcCCCccEEEE-eCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLR---K-PMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~---~-~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~-t~~~~~GlDlp~a~~vI~~~ 340 (516)
....++|||++....++.++..+. + ....|++ ++-...+..|+. +.+|.. ++.++-|+|+-+|.+|++..
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t--~d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGET--EDFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCC--cchhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheec
Confidence 556899999999999988888773 2 2234443 244556666765 566544 78899999999999999997
Q ss_pred CCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHH
Q 010184 341 SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (516)
Q Consensus 341 ~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (516)
|-. |+...+|++||+||+| |....++|.++-.+|+|+.+.
T Consensus 1294 PiL-N~~~E~QAigRvhRiG-----------Q~~pT~V~~fiv~~TvEe~Il 1333 (1394)
T KOG0298|consen 1294 PIL-NPGDEAQAIGRVHRIG-----------QKRPTFVHRFIVNETVEENIL 1333 (1394)
T ss_pred ccc-CchHHHhhhhhhhhcc-----------cccchhhhhhhhccchHHHHH
Confidence 664 9999999999999999 888999999999999999764
No 190
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.85 E-value=5.7e-05 Score=77.12 Aligned_cols=90 Identities=13% Similarity=0.104 Sum_probs=60.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
-.+|.+..|+|||++++.++..+ +..++++|+...|....+..+..-. .. ......+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~----------~~-------~~~~~~~~ 65 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKY----------NP-------KLKKSDFR 65 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhc----------cc-------chhhhhhh
Confidence 46788999999999999988776 4689999999998887777776632 00 00112233
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (516)
.+..+..... ........+++||+||||++..
T Consensus 66 ~~~~~i~~~~--------~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 66 KPTSFINNYS--------ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhHHHHhhcc--------cccccCCcCCEEEEehhHhhhh
Confidence 3333322110 0011136789999999999987
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.84 E-value=0.0001 Score=79.82 Aligned_cols=144 Identities=13% Similarity=0.072 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---C----CCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.-++|+.|+...+.++ -.+|.+++|+|||.+...++..+ . .++++.+||.--+....+.+..-.. .
T Consensus 153 ~~d~Qk~Av~~a~~~~---~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~----~ 225 (615)
T PRK10875 153 EVDWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR----Q 225 (615)
T ss_pred CCHHHHHHHHHHhcCC---eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh----c
Confidence 4589999999888765 88999999999998865554322 1 3688889998766665555443211 0
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEe
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LT 178 (516)
+. +....+. ....-..|...+............ ..-....++++|+||+-.+..+.+..++..++...+|.|-
T Consensus 226 ~~-~~~~~~~----~~~~~a~TiHrlLg~~~~~~~~~~--~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlv 298 (615)
T PRK10875 226 LP-LTDEQKK----RIPEEASTLHRLLGAQPGSQRLRY--HAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFL 298 (615)
T ss_pred cc-cchhhhh----cCCCchHHHHHHhCcCCCccchhh--ccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEe
Confidence 00 0111111 111234565555443222110000 0111245689999999999999999999999998899988
Q ss_pred ccCCC
Q 010184 179 ATLVR 183 (516)
Q Consensus 179 ATp~~ 183 (516)
|=+.+
T Consensus 299 GD~~Q 303 (615)
T PRK10875 299 GDRDQ 303 (615)
T ss_pred cchhh
Confidence 87644
No 192
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.74 E-value=0.00035 Score=76.51 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..|-+.|.+|+..++... ...+|.+|+|+|||.+...++.+ .+.++|+++||...+++..+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 468999999999988763 27899999999999888776644 3679999999999899998888763
No 193
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.64 E-value=0.00041 Score=69.39 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=74.9
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCC
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~ 113 (516)
+..|+..+.-.+.|+.+|+|+|||-+|-.++...+..+.-+..+..-+.+.+.-+.+--
T Consensus 39 lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~--------------------- 97 (436)
T COG2256 39 LRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEAR--------------------- 97 (436)
T ss_pred HHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHH---------------------
Confidence 46778877667999999999999999999998888888777766665555554444320
Q ss_pred CcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccCCC
Q 010184 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (516)
Q Consensus 114 ~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (516)
......+--++++||+|++.-..-..++..+-...++++-||-.+
T Consensus 98 -------------------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTEN 142 (436)
T COG2256 98 -------------------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTEN 142 (436)
T ss_pred -------------------------HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCC
Confidence 000001123889999999987766667777777778888888654
No 194
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.62 E-value=0.00029 Score=68.20 Aligned_cols=88 Identities=20% Similarity=0.215 Sum_probs=67.3
Q ss_pred HHHHHHhcCCCccEEEEeCCCccccccccc--------CEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCcee
Q 010184 304 KILQAFKCSRDLNTIFLSKVGDNSIDIPEA--------NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYN 375 (516)
Q Consensus 304 ~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a--------~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~ 375 (516)
...+.|.++ ..+|+|.|.++++|+.+++- .+-|....+| |....+|.+||+||.+ |...
T Consensus 52 ~e~~~F~~g-~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pw-sad~aiQ~~GR~hRsn-----------Q~~~ 118 (278)
T PF13871_consen 52 AEKQAFMDG-EKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPW-SADKAIQQFGRTHRSN-----------QVSA 118 (278)
T ss_pred HHHHHHhCC-CceEEEEecccccccchhccccCCCCCceEEEEeeCCC-CHHHHHHHhccccccc-----------cccC
Confidence 557899998 89999999999999999742 2445556676 9999999999999999 4444
Q ss_pred EEEEEEEcCCchhhhHHHHHHHHHHHcCC
Q 010184 376 AFFYSLVSTDTQEMFYSTKRQQFLIDQGY 404 (516)
Q Consensus 376 ~~~y~lv~~~t~e~~~~~~r~~~l~~~g~ 404 (516)
..+..+++.-..|..++..-.+.|...|.
T Consensus 119 P~y~~l~t~~~gE~Rfas~va~rL~sLgA 147 (278)
T PF13871_consen 119 PEYRFLVTDLPGERRFASTVARRLESLGA 147 (278)
T ss_pred CEEEEeecCCHHHHHHHHHHHHHHhhccc
Confidence 44445666667777777776777776664
No 195
>PF13245 AAA_19: Part of AAA domain
Probab=97.57 E-value=0.0002 Score=55.55 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=35.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
-.+|.+|+|+|||.+.+..+... ++++|+++|++..+++..+.+
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 56779999999997776655322 578999999999888777766
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.56 E-value=0.0014 Score=56.87 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeCh
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~ 78 (516)
+...+...+.....+..+|.+|+|+|||..+..++... ..+++++....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 34444444444334578999999999999888887766 56666665544
No 197
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.44 E-value=0.00031 Score=69.33 Aligned_cols=41 Identities=17% Similarity=0.347 Sum_probs=36.7
Q ss_pred cEEEEccCccCCchhHHHHHhhcccceEEEEeccCCCCccc
Q 010184 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDER 187 (516)
Q Consensus 147 ~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~~~~~ 187 (516)
.+||+|||+.+.......++.......+|.+|+-|.+-|..
T Consensus 353 ~FiIIDEaQNLTpheikTiltR~G~GsKIVl~gd~aQiD~~ 393 (436)
T COG1875 353 SFIIIDEAQNLTPHELKTILTRAGEGSKIVLTGDPAQIDTP 393 (436)
T ss_pred ceEEEehhhccCHHHHHHHHHhccCCCEEEEcCCHHHcCCc
Confidence 59999999999999999999999999999999999876653
No 198
>PRK06526 transposase; Provisional
Probab=97.44 E-value=0.00086 Score=64.93 Aligned_cols=96 Identities=17% Similarity=0.286 Sum_probs=55.7
Q ss_pred cccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
.+.++.+|+|+|||..+.+++. ..+.+++++. +.+|.+++..... . .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t-----~~~l~~~l~~~~~--------------------~----~~ 149 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT-----AAQWVARLAAAHH--------------------A----GR 149 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh-----HHHHHHHHHHHHh--------------------c----Cc
Confidence 4899999999999998887653 3456666643 2345555543100 0 01
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHh-hcccceEEEEeccCCC
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVIS-LTKSHCKLGLTATLVR 183 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~-~~~~~~~l~LTATp~~ 183 (516)
+ ...+..+ .+++++||||+|..+.. .+..++. .......|..|..|+.
T Consensus 150 ~-------------~~~l~~l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 150 L-------------QAELVKL--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred H-------------HHHHHHh--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 1 1112333 45789999999988642 2223332 2223456776777754
No 199
>PRK04296 thymidine kinase; Provisional
Probab=97.41 E-value=0.00052 Score=63.54 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=25.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN 77 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~ 77 (516)
-.++.+|+|+|||..++.++.+. +++++++-|.
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~ 39 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA 39 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 45788999999999888877543 5678888663
No 200
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.41 E-value=0.0013 Score=68.78 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=63.0
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCC
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~ 113 (516)
+..++..+...+.+|.+|+|+|||.++-.++.....+++.+.+...-+.+...-+...
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~---------------------- 84 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEA---------------------- 84 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHH----------------------
Confidence 6667776666688999999999999999888776666555544322111111111100
Q ss_pred CcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccC
Q 010184 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181 (516)
Q Consensus 114 ~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp 181 (516)
..........++++||+|++.......++..+.....+.+.+|.
T Consensus 85 ------------------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 85 ------------------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred ------------------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCC
Confidence 00011134569999999999876655566666555556665654
No 201
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.30 E-value=0.012 Score=60.88 Aligned_cols=93 Identities=11% Similarity=0.066 Sum_probs=72.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC--cccccccccCEEEE
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG--DNSIDIPEANVIIQ 338 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~--~~GlDlp~a~~vI~ 338 (516)
....++|||+++-..--.+-++|+ ...++--+++.+-.+.-..|.+| ...+|+.|--. =+=..+..+..||+
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEE
Confidence 567789999999888888888884 33477788888988999999998 99999998321 13457888999999
Q ss_pred ecCCCCCHHHHHHHhhcccccC
Q 010184 339 ISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 339 ~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
|.+|. ++.-|...+.-.....
T Consensus 377 Y~~P~-~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 377 YGPPE-NPQFYSELLNMLDESS 397 (442)
T ss_pred ECCCC-ChhHHHHHHhhhcccc
Confidence 97764 8888877776555444
No 202
>PRK08181 transposase; Validated
Probab=97.25 E-value=0.0029 Score=61.73 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=36.2
Q ss_pred CCCHHHHHHHH---HHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHH
Q 010184 25 QPRPYQEKSLS---KMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ 83 (516)
Q Consensus 25 ~Lr~yQ~~al~---~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Q 83 (516)
.+...|..++. .|...+ .+.+|.+|+|+|||..+.+++. ..+.+++++. ...|+.+
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHHH
Confidence 35566776664 344443 5899999999999988877653 3455665554 3344443
No 203
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.23 E-value=0.0016 Score=71.51 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=85.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
..|..-|++|+-+.+... ...+|.+-+|+|||.+...++ ...++++|+.+=|..-+++..-.+..+ ++. +.
T Consensus 668 ~~LN~dQr~A~~k~L~ae--dy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~-~i~---~l 741 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAE--DYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF-GIY---IL 741 (1100)
T ss_pred hhcCHHHHHHHHHHHhcc--chheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc-Ccc---ee
Confidence 468889999999988765 378999999999998877665 445899999999988899888877765 332 22
Q ss_pred EEeCCcc----------------------ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 101 RFTSDSK----------------------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 101 ~~~~~~~----------------------~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
++....+ +++-+...||.+|-=-+.. ..|..+.|+++|+|||-.+.
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~------------plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINH------------PLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCc------------hhhhccccCEEEEccccccc
Confidence 1111111 0123567788877633322 33446889999999999887
Q ss_pred chhHH
Q 010184 159 AHMFR 163 (516)
Q Consensus 159 ~~~~~ 163 (516)
-+..-
T Consensus 810 lP~~L 814 (1100)
T KOG1805|consen 810 LPLCL 814 (1100)
T ss_pred cchhh
Confidence 66433
No 204
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.23 E-value=0.0021 Score=71.18 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.2
Q ss_pred HHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
.+..++..++..+.+|.+|+|+|||.++-.++...+.++
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 344556665556889999999999999988887655443
No 205
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.16 E-value=0.0031 Score=70.54 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
..+.|.+-|.+|+..++..+ +-.+|.++.|+|||.+.-.+. ...+.++++++||...+.... .-++++.
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~a-- 420 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESGIES-- 420 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCce--
Confidence 45789999999999988753 378999999999997765543 334678999999986454433 2222211
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-ccceEEEE
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~-~~~~~l~L 177 (516)
.|...+.....+. ... ....+++|+||+-.+....+..++... ....+|.|
T Consensus 421 --------------------~Ti~~~~~~~~~~------~~~--~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 421 --------------------RTLASLEYAWANG------RDL--LSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVL 472 (744)
T ss_pred --------------------eeHHHHHhhhccC------ccc--CCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 1222221100000 001 145689999999999998888887743 35567888
Q ss_pred eccC
Q 010184 178 TATL 181 (516)
Q Consensus 178 TATp 181 (516)
-|=|
T Consensus 473 VGD~ 476 (744)
T TIGR02768 473 VGDP 476 (744)
T ss_pred ECCh
Confidence 7743
No 206
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.12 E-value=0.0023 Score=69.67 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=34.5
Q ss_pred ccCCCCCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHH
Q 010184 18 MELKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 18 ~~l~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~ 62 (516)
+...+.++++|-|..-+.+++.. .+.-++++-.|||+|||+..+.
T Consensus 14 v~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 14 VPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred ceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 33556779999999998887653 2234899999999999986553
No 207
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0015 Score=56.03 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC---EEEEEeChh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAV 79 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~---~Lvl~P~~~ 79 (516)
...+|.+|+|+|||.++..++...... ++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 478999999999999999999887754 777776654
No 208
>PLN03025 replication factor C subunit; Provisional
Probab=97.08 E-value=0.004 Score=62.65 Aligned_cols=40 Identities=20% Similarity=0.187 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+.+..+..++...+.++.+|+|+|||..+..++..+.
T Consensus 20 ~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 20 DAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 4455566666665555789999999999999998887753
No 209
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.08 E-value=0.00056 Score=75.42 Aligned_cols=111 Identities=20% Similarity=0.271 Sum_probs=79.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccccc--CCCcE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR--GNAGV 116 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~--~~~~I 116 (516)
.+..+-+|||+|||+.+-.++-.. +.++.+++|.++|+..-.+...+....++.++...+|+...... ...++
T Consensus 944 ~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~~ 1023 (1230)
T KOG0952|consen 944 LNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREADI 1023 (1230)
T ss_pred hhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCce
Confidence 366788999999999987766332 47899999999998876666655545556677777877654322 46889
Q ss_pred EEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch
Q 010184 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (516)
Q Consensus 117 vV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (516)
+|||++..-... |++...+ .+ ..++++|+||.|.++..
T Consensus 1024 ~ittpek~dgi~-Rsw~~r~---~v--~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1024 VITTPEKWDGIS-RSWQTRK---YV--QSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EEcccccccCcc-ccccchh---hh--ccccceeecccccccCC
Confidence 999998875532 3333222 22 56778999999998754
No 210
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.07 E-value=0.0065 Score=62.33 Aligned_cols=109 Identities=15% Similarity=0.280 Sum_probs=61.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeCh--hhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNA--VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~--~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (516)
+..++++|||+|||.++..++... ++++.+++--. .-+..| ++.|....+..+
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv--------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPV--------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH---HHHHhhcCCcce---------------
Confidence 467889999999999987766432 34555555322 222222 444433221111
Q ss_pred cEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhcc--cceEEEEeccCCC
Q 010184 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK--SHCKLGLTATLVR 183 (516)
Q Consensus 115 ~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~~--~~~~l~LTATp~~ 183 (516)
.++.+++.+ ...+..+ ...++||+|++.+.... ...+++.... ....|.|+||--.
T Consensus 237 -~~~~~~~~l----------~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~ 299 (388)
T PRK12723 237 -KAIESFKDL----------KEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKT 299 (388)
T ss_pred -EeeCcHHHH----------HHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCH
Confidence 122234333 2223444 56899999999998743 2223344332 2467899999863
No 211
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.07 E-value=0.0032 Score=71.62 Aligned_cols=124 Identities=18% Similarity=0.130 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.+.|.+-|.+|+..++..+ +-++|.++.|+|||.+.-.+. ...+.+++.++||...+.. +..-.++.
T Consensus 344 g~~Ls~eQr~Av~~il~s~--~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~----L~e~tGi~---- 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGR--DLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAEN----LEGGSGIA---- 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHH----HhhccCcc----
Confidence 4679999999999988754 267899999999998643322 3346789999999864433 22211211
Q ss_pred EEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-ccceEEEEe
Q 010184 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGLT 178 (516)
Q Consensus 100 ~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~-~~~~~l~LT 178 (516)
-.|...+.....+. ... ....+++||||+-.+....+.+++... ....+|.|.
T Consensus 414 ------------------a~TI~sll~~~~~~------~~~--l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 414 ------------------SRTIASLEHGWGQG------RDL--LTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred ------------------hhhHHHHHhhhccc------ccc--cccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEE
Confidence 12322221100000 001 134579999999999999888888754 455678887
Q ss_pred ccCC
Q 010184 179 ATLV 182 (516)
Q Consensus 179 ATp~ 182 (516)
|=|.
T Consensus 468 GD~~ 471 (988)
T PRK13889 468 GDPQ 471 (988)
T ss_pred CCHH
Confidence 7654
No 212
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=97.04 E-value=0.015 Score=56.45 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=59.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHh-----cCCCEEEEEeChhh-----HHHHHHHHHH--hhCCCCCcEEEEeCCccccccC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVS-----VDQWAFQFKL--WSTIQDDQICRFTSDSKERFRG 112 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L-----~~Qw~~e~~~--~~~~~~~~v~~~~~~~~~~~~~ 112 (516)
-+++.+|||+||+-.-=.++.. ....+++|+|.+.. ..-|..++.. |...++..+.-.++.-.
T Consensus 89 I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~----- 163 (369)
T PF02456_consen 89 IGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFR----- 163 (369)
T ss_pred EEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeecccccccc-----
Confidence 3578899999999655444422 23679999998744 3347777664 21112222333333332
Q ss_pred CCcEEEEchhhhhccCCCC-hhHHHHHHHHccCCccEEEEccC
Q 010184 113 NAGVVVTTYNMVAFGGKRS-EESEKIIEEIRNREWGLLLMDEV 154 (516)
Q Consensus 113 ~~~IvV~T~~~l~~~~~r~-~~~~~~~~~l~~~~~~~vIlDEa 154 (516)
...+-+||+.+.....-. .........-....+-.||+|||
T Consensus 164 -P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDEC 205 (369)
T PF02456_consen 164 -PKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDEC 205 (369)
T ss_pred -ccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHH
Confidence 457777887776543221 11122333333456679999998
No 213
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.99 E-value=0.0054 Score=61.75 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.++|||....+.++..++ ++..++.+|.|.|||..+..++..+
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 468999999999998765 3456788999999999999888664
No 214
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.95 E-value=0.0096 Score=59.74 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEE-EecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
...+...+.+..+...++..+.++ .+|.|+|||..+-.++...+.+++.+-+.
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 344555556666666654445555 79999999999988887766666555544
No 215
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.0057 Score=65.93 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCCc-ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+-.+.|..++..++-. ..++.+|.|.|||.++..++..+.
T Consensus 23 ~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 23 HVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344566666665433 458899999999999999887664
No 216
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.86 E-value=0.006 Score=60.35 Aligned_cols=105 Identities=18% Similarity=0.177 Sum_probs=65.2
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCC---EEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccc
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF 110 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~---~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~ 110 (516)
+..++..++-.+.|+++|+|+|||-.+-.++...+++ ++=+.-+++=+...++-|++-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~a------------------- 213 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQA------------------- 213 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHH-------------------
Confidence 3455666666689999999999999999888888766 444444443333333333321
Q ss_pred cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccCCC
Q 010184 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (516)
Q Consensus 111 ~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (516)
.+ ...+ ..+--++++||+|++.-..-..++-.+..--+++.-||-.+
T Consensus 214 ------------------------q~-~~~l-~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 214 ------------------------QN-EKSL-TKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred ------------------------HH-HHhh-hcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCC
Confidence 00 1111 12224788899999865555555555555567777788654
No 217
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.86 E-value=0.0051 Score=57.55 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=24.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
.+.++++|+|+|||..|-.++...+.++.++
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 5789999999999999999998888766543
No 218
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.79 E-value=0.0052 Score=59.96 Aligned_cols=23 Identities=22% Similarity=0.011 Sum_probs=19.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
.+.++.+|+|+|||.++-.++..
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~ 65 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKL 65 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHH
Confidence 46689999999999999877654
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.79 E-value=0.0084 Score=62.74 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=28.6
Q ss_pred HHHH---HHHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKS---LSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~a---l~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
|..+ +..++..++- +..++.+|.|+|||.++..++..+.
T Consensus 23 Qe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Ln 65 (484)
T PRK14956 23 QDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLN 65 (484)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5544 4455665542 3469999999999999999987765
No 220
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.77 E-value=0.011 Score=63.22 Aligned_cols=38 Identities=16% Similarity=0.150 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.+..++..++-.+ .++.+|.|+|||.++..++..+.
T Consensus 25 ~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 25 VRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 345556666554334 58999999999999998887664
No 221
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=96.76 E-value=0.013 Score=64.09 Aligned_cols=108 Identities=18% Similarity=0.212 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHhh-cCCCeEEEEeccHHHHHHHHHHhC------------CceEecCCCHHHHHHHHHHHhcCCCccEEE
Q 010184 253 FRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR------------KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (516)
Q Consensus 253 ~~~~~~ll~~~~~-~~~~k~iVF~~~~~~~~~l~~~L~------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv 319 (516)
+.+++.++.+... .-..-++||-.--..+-.|...|- +.-.|......+..++.+....+ ..++|+
T Consensus 627 f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~g-v~kii~ 705 (1282)
T KOG0921|consen 627 FGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEG-VTKIIL 705 (1282)
T ss_pred hHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCccccc-cccccc
Confidence 4566666655441 123457788777776666666551 22356666555656666665555 677788
Q ss_pred EeCCCcccccccccCEEE-----------------EecCCCCCHHHHHHHhhcccccCC
Q 010184 320 LSKVGDNSIDIPEANVII-----------------QISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 320 ~t~~~~~GlDlp~a~~vI-----------------~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|....+.+.+-+...|| ++..-|.|.-...||-||++|.-+
T Consensus 706 stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 706 STNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred ccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 888777777665432222 223335688888999999998663
No 222
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.76 E-value=0.01 Score=64.93 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.|..++..++ ++..++.+|.|+|||.++..++..+.
T Consensus 25 v~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 25 VRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344555666654 33458999999999999998887665
No 223
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.69 E-value=0.013 Score=65.26 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=27.1
Q ss_pred HHHHHhCCCCccc-EEEecCCCcHHHHHHHHHHhcCC
Q 010184 34 LSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 34 l~~~~~~~~~~~~-il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
|..++..++-.+. ++.+|.|+|||.++..++..+..
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4455555544454 89999999999999999977653
No 224
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.68 E-value=0.0062 Score=62.42 Aligned_cols=115 Identities=17% Similarity=0.252 Sum_probs=72.9
Q ss_pred CCCHHHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHH--HHHHHHhhCCCC
Q 010184 25 QPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW--AFQFKLWSTIQD 96 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw--~~e~~~~~~~~~ 96 (516)
+|.+-|++++..+++ ...+....|.++-|+|||.+.-.+.... ++.+++++||..-+... -..+..+++++-
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 467889999887633 2344577889999999999987776554 46799999998756555 245666666542
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHH
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (516)
.. ... ...-+... ......+ ...+++|+||+-.+.+..+..+-
T Consensus 81 ~~------~~~------~~~~~~~~-------------~~~~~~l--~~~~~lIiDEism~~~~~l~~i~ 123 (364)
T PF05970_consen 81 NN------NEK------SQCKISKN-------------SRLRERL--RKADVLIIDEISMVSADMLDAID 123 (364)
T ss_pred cc------ccc------cccccccc-------------chhhhhh--hhheeeecccccchhHHHHHHHH
Confidence 11 000 00000000 1112233 45679999999999988766543
No 225
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.66 E-value=0.02 Score=57.92 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-++...+.+..++..+.....++.+|+|+|||.++..++..+.
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3566666777777766444689999999999999988876653
No 226
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.65 E-value=0.016 Score=66.60 Aligned_cols=125 Identities=17% Similarity=0.160 Sum_probs=82.7
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
..+.|.+-|.+|+..+...+ +-++|.++.|+|||.+.-.+. ...+.+++.++|+..-+. .+..-++++
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~--r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~----~L~e~~Gi~--- 448 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPA--RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE----GLEKEAGIQ--- 448 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH----HHHHhhCCC---
Confidence 34689999999999876443 478999999999998765544 345788999999976443 344333332
Q ss_pred EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc-cceEEEE
Q 010184 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGL 177 (516)
Q Consensus 99 v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~-~~~~l~L 177 (516)
-.|...+....... ...+ ..-++|||||+..+....+..++.... ...+|.|
T Consensus 449 -------------------a~TIas~ll~~~~~------~~~l--~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVL 501 (1102)
T PRK13826 449 -------------------SRTLSSWELRWNQG------RDQL--DNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVL 501 (1102)
T ss_pred -------------------eeeHHHHHhhhccC------ccCC--CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 12222221000000 0011 334699999999999998888888774 5567888
Q ss_pred eccCC
Q 010184 178 TATLV 182 (516)
Q Consensus 178 TATp~ 182 (516)
-|=|.
T Consensus 502 VGD~~ 506 (1102)
T PRK13826 502 VGDPE 506 (1102)
T ss_pred ECCHH
Confidence 77654
No 227
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.63 E-value=0.027 Score=54.96 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHHh--CCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 26 PRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 26 Lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+.+.+++..+.. ..+++..+|.+|.|+|||.++-.++....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 44555666664422 12223678999999999999988877654
No 228
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.61 E-value=0.018 Score=64.12 Aligned_cols=101 Identities=20% Similarity=0.251 Sum_probs=68.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC----Cc-eEecCCCHHHHHHHHHHHhcC---CCccEEEEeCCCcc
Q 010184 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KP-MIYGATSHVERTKILQAFKCS---RDLNTIFLSKVGDN 326 (516)
Q Consensus 255 ~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~----~~-~i~g~~~~~eR~~~l~~F~~~---~~~~vLv~t~~~~~ 326 (516)
++..+..... .+| .++||+.+...++.++..|. .. ++.|. ..|.+++++|++. ++-.||++|....+
T Consensus 523 ~~~~i~~l~~-~~g-g~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 523 MAEFLPELLE-KHK-GSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHh-cCC-CEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 3334444444 444 58999999999998888773 33 44554 2577888888752 25569999999999
Q ss_pred cccccc--cCEEEEecCCCC---CHH--------------------------HHHHHhhcccccC
Q 010184 327 SIDIPE--ANVIIQISSHAG---SRR--------------------------QEAQRLGRILRAK 360 (516)
Q Consensus 327 GlDlp~--a~~vI~~~~~~~---s~~--------------------------~~~Qr~GR~~R~g 360 (516)
|||+|+ +.+||+..-|+. +|. .+.|.+||.-|..
T Consensus 598 GVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 999997 457777633332 221 1379999999977
No 229
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.61 E-value=0.017 Score=62.46 Aligned_cols=40 Identities=20% Similarity=0.245 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+-.+.+..++.+++ ++..++.+|.|.|||.+|..++..+.
T Consensus 22 ~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~Ln 62 (702)
T PRK14960 22 HVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLN 62 (702)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 33455666676664 34559999999999999998887765
No 230
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.56 E-value=0.031 Score=51.96 Aligned_cols=116 Identities=18% Similarity=0.280 Sum_probs=63.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeC--hhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~--~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
-.++++|||+|||.+...++... ++++.+++.- +.=+.++.+.+.+-.++ ..+.....+
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~v-----p~~~~~~~~----------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGV-----PFYVARTES----------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTE-----EEEESSTTS-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhcc-----ccchhhcch-----------
Confidence 46889999999999887766432 5566666643 22233344444444332 222111100
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhc-ccceEEEEeccCCCCc
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLT-KSHCKLGLTATLVRED 185 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~-~~~~~l~LTATp~~~~ 185 (516)
.+..+ ....++.+...++++|++|-+-+.+.. .+.+++..+ +....|.|+||-...+
T Consensus 67 ~~~~~---------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 67 DPAEI---------AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp CHHHH---------HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred hhHHH---------HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 01011 123345555577899999999888753 334444444 3346788899986543
No 231
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.45 E-value=0.017 Score=60.97 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++-.+.+..++..++. ...++.+|+|+|||.++-.++..+.
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444556666666543 3458999999999999998887654
No 232
>PHA02533 17 large terminase protein; Provisional
Probab=96.44 E-value=0.029 Score=60.15 Aligned_cols=143 Identities=20% Similarity=0.185 Sum_probs=80.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH----H-hcCCCEEEEEeChhhHHHHHHHHHHhhC-CCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----C-RIKKSCLCLATNAVSVDQWAFQFKLWST-IQD 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~-~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~-~~~ 96 (516)
.+.|+|+|.+.+..+... +..++..+=..|||.++..++ + ..+..+++++|+..-+....+.++.... .|.
T Consensus 57 Pf~L~p~Q~~i~~~~~~~---R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKN---RFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcC---eEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 378999999999987532 356888999999998766433 1 2235799999988766666566654322 111
Q ss_pred C-cEEEEeC-CccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHHhhccc-
Q 010184 97 D-QICRFTS-DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKS- 171 (516)
Q Consensus 97 ~-~v~~~~~-~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~~~~- 171 (516)
. ....... ...-.+.+++.|.+.|-+. +..+.....++|+||+|..+.. .+..+...+..
T Consensus 134 l~~~~i~~~~~~~I~l~NGS~I~~lss~~---------------~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg 198 (534)
T PHA02533 134 FLQPGIVEWNKGSIELENGSKIGAYASSP---------------DAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSG 198 (534)
T ss_pred HhhcceeecCccEEEeCCCCEEEEEeCCC---------------CccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcC
Confidence 0 1111111 1111123334444433221 1122456678999999998873 33333333322
Q ss_pred -ceEEEEeccCCC
Q 010184 172 -HCKLGLTATLVR 183 (516)
Q Consensus 172 -~~~l~LTATp~~ 183 (516)
..++.+..||..
T Consensus 199 ~~~r~iiiSTp~G 211 (534)
T PHA02533 199 RSSKIIITSTPNG 211 (534)
T ss_pred CCceEEEEECCCc
Confidence 235667777753
No 233
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.35 E-value=0.016 Score=49.62 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=27.8
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCEEEEEeChh
Q 010184 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~ 79 (516)
+|.+|+|+|||..+-.++...+.+++.+.....
T Consensus 2 ll~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 2 LLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred EEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 789999999999999999998877776666543
No 234
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.32 E-value=0.025 Score=58.37 Aligned_cols=38 Identities=18% Similarity=0.294 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHH---HhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.++|-|-+=+..+ +..+ +.|+|-+|+|+|||..-+.++
T Consensus 16 ~iYPEQ~~YM~elKrsLDak--Gh~llEMPSGTGKTvsLLSli 56 (755)
T KOG1131|consen 16 YIYPEQYEYMRELKRSLDAK--GHCLLEMPSGTGKTVSLLSLI 56 (755)
T ss_pred ccCHHHHHHHHHHHHhhccC--CcEEEECCCCCCcchHHHHHH
Confidence 5788887766544 4433 489999999999998766654
No 235
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.023 Score=61.79 Aligned_cols=37 Identities=22% Similarity=0.424 Sum_probs=27.4
Q ss_pred CCccEEEEccCccCCchhHHHHHhhcc---cceEEEEecc
Q 010184 144 REWGLLLMDEVHVVPAHMFRKVISLTK---SHCKLGLTAT 180 (516)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~~~---~~~~l~LTAT 180 (516)
.++.++||||+|++....+..+++.+. .+.++.|..|
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 468899999999999888877777653 4445555555
No 236
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.026 Score=61.52 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=26.9
Q ss_pred HHHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 32 KSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 32 ~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+.+..++..++-.+ .++.+|.|+|||.++..++..+.
T Consensus 26 ~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~ 63 (647)
T PRK07994 26 TALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63 (647)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 34555566554334 48899999999999998886654
No 237
>PRK08727 hypothetical protein; Validated
Probab=96.30 E-value=0.05 Score=52.09 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=22.1
Q ss_pred cccEEEecCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
...+|.+|+|+|||-.+.+++ +..+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 357999999999997766654 33345566553
No 238
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.28 E-value=0.029 Score=54.23 Aligned_cols=72 Identities=19% Similarity=0.310 Sum_probs=55.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~ 123 (516)
+..+|.+|+|+||+..+-+.+.... .+.+-+.++.|+.-|..|-.+..
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEkLV------------------------------- 214 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEKLV------------------------------- 214 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHHHH-------------------------------
Confidence 4567789999999999998888877 77777888899999887766641
Q ss_pred hhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 124 l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
..+++.-+..++++|++||++.+-
T Consensus 215 -----------knLFemARe~kPSIIFiDEiDslc 238 (439)
T KOG0739|consen 215 -----------KNLFEMARENKPSIIFIDEIDSLC 238 (439)
T ss_pred -----------HHHHHHHHhcCCcEEEeehhhhhc
Confidence 122333445788999999999765
No 239
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.27 E-value=0.014 Score=56.68 Aligned_cols=41 Identities=17% Similarity=0.111 Sum_probs=31.2
Q ss_pred HHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 29 YQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 29 yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
+|...+..+.+ .......++.+|.|+|||-++++++.++..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 58877775433 233357789999999999999999988765
No 240
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.27 E-value=0.046 Score=59.66 Aligned_cols=38 Identities=21% Similarity=0.311 Sum_probs=28.3
Q ss_pred HHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.|..++..++ ++..++.+|.|+|||.++..++..+.
T Consensus 25 v~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~Ln 63 (709)
T PRK08691 25 VKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLN 63 (709)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 344555666654 34569999999999999998887765
No 241
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.25 E-value=0.031 Score=53.54 Aligned_cols=45 Identities=13% Similarity=0.056 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
..++..+.......+.+|.+|+|+|||-.+.+++.. .+.+++++.
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~ 80 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP 80 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344444444433357899999999999877665533 234455543
No 242
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=96.23 E-value=0.019 Score=62.01 Aligned_cols=147 Identities=15% Similarity=0.143 Sum_probs=93.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHH-HHHHHhhCCCCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWA-FQFKLWSTIQDD 97 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~-~e~~~~~~~~~~ 97 (516)
.+...|||.+-++.+-... -+..++..+.-+|||.+++.++.. ...++|++.|+..++..|. ..|...+...+.
T Consensus 14 ~~~~~Py~~eimd~~~~~~-v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPS-VREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCCChhHHHHHHhcCCcC-ccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 4588999999999765443 457888899999999988887633 3589999999999999988 456554322221
Q ss_pred cEEEEeC------Cc---cccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--------
Q 010184 98 QICRFTS------DS---KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------- 160 (516)
Q Consensus 98 ~v~~~~~------~~---~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-------- 160 (516)
--..+.. +. ...+. ...+.++...+- ..|.....+++++||++.++..
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~--------------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSP--------------SNLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred HHHHhCchhhcccCCchhheecC-CCEEEEEeCCCC--------------cccccCCcCEEEEechhhccccCccCCCHH
Confidence 1112222 00 01123 233444443322 2334577889999999999642
Q ss_pred -hHHHHHhhcccceEEEEeccCCCCc
Q 010184 161 -MFRKVISLTKSHCKLGLTATLVRED 185 (516)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~ 185 (516)
...+-...+....++++..||....
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~ 183 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEG 183 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCC
Confidence 1222222334567899999998764
No 243
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.21 E-value=0.027 Score=53.37 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+.+..+......+..+|.+|+|+|||..+..++...
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445555444445678999999999999998877554
No 244
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.20 E-value=0.061 Score=54.84 Aligned_cols=109 Identities=17% Similarity=0.152 Sum_probs=60.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe-C--hhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P-~--~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (516)
+...+++|+|+|||.++..++..+ ++++.++.. + ...++||..--.. .+ ..++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~-lg--------------------ipv~ 300 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-IG--------------------FEVI 300 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhh-cC--------------------CcEE
Confidence 466889999999999887766443 456666654 2 2346666532111 11 1122
Q ss_pred -EEchhhhhccCCCChhHHHHHHHHcc-CCccEEEEccCccCCch--hH---HHHHhhccc-ceEEEEeccCCC
Q 010184 118 -VTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAH--MF---RKVISLTKS-HCKLGLTATLVR 183 (516)
Q Consensus 118 -V~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~~--~~---~~~l~~~~~-~~~l~LTATp~~ 183 (516)
+.++..+ ...+..+.. ..+++||+|-+=+.... .. .+++..... ...|.||||-..
T Consensus 301 v~~d~~~L----------~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~ 364 (436)
T PRK11889 301 AVRDEAAM----------TRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKS 364 (436)
T ss_pred ecCCHHHH----------HHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccCh
Confidence 2344444 223444432 36899999999776542 22 333332222 345668888653
No 245
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.17 E-value=0.1 Score=46.92 Aligned_cols=123 Identities=15% Similarity=0.223 Sum_probs=61.9
Q ss_pred HHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcCCCEE--EEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccc
Q 010184 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCL--CLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF 110 (516)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~~L--vl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~ 110 (516)
+..++..++ +...++.+|.|+||+..+..++..+-..-. ..|..-.... .+.. ....++..+.......
T Consensus 9 L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~----~~~~---~~~~d~~~~~~~~~~~- 80 (162)
T PF13177_consen 9 LKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCR----RIEE---GNHPDFIIIKPDKKKK- 80 (162)
T ss_dssp HHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHH----HHHT---T-CTTEEEEETTTSSS-
T ss_pred HHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHH----HHHh---ccCcceEEEecccccc-
Confidence 334455554 344699999999999999998866531100 0222222122 2222 1222344443332210
Q ss_pred cCCCcEEEEchhhhhccCCCChhHHHHHHHHcc----CCccEEEEccCccCCchh---HHHHHhhcccceEEEEeccC
Q 010184 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN----REWGLLLMDEVHVVPAHM---FRKVISLTKSHCKLGLTATL 181 (516)
Q Consensus 111 ~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~----~~~~~vIlDEaH~~~~~~---~~~~l~~~~~~~~l~LTATp 181 (516)
.|-+ +.+ ..+.+++.. ..+.++|+||+|.+.... +.+.+..-+...++.|+++-
T Consensus 81 ----~i~i---~~i----------r~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~ 141 (162)
T PF13177_consen 81 ----SIKI---DQI----------REIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNN 141 (162)
T ss_dssp ----SBSH---HHH----------HHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-
T ss_pred ----hhhH---HHH----------HHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECC
Confidence 1111 111 222333322 357899999999998764 44555555566666666553
No 246
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.16 E-value=0.058 Score=55.32 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=28.0
Q ss_pred HHHHHHH---HHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.|..++. .++..++ ++..++.+|.|+|||.++..++..+.
T Consensus 20 Gq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 20 GQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred ChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 3555544 4444443 23458999999999999999887765
No 247
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.14 E-value=0.024 Score=49.75 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCCC--ccEEEEeCC--Cccccccccc--CEEEEe
Q 010184 300 VERTKILQAFKCSRD--LNTIFLSKV--GDNSIDIPEA--NVIIQI 339 (516)
Q Consensus 300 ~eR~~~l~~F~~~~~--~~vLv~t~~--~~~GlDlp~a--~~vI~~ 339 (516)
.+..+++++|++..+ -.+|+++.- ..+|||+|+- .+||+.
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~ 76 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIV 76 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEE
Confidence 355788999998522 157777755 8999999985 466665
No 248
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.052 Score=58.36 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+.+..++..++-.+ .++.+|.|+|||.++..++..+.
T Consensus 24 v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 24 VVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3344555566554334 48999999999999998887664
No 249
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.13 E-value=0.012 Score=58.52 Aligned_cols=94 Identities=9% Similarity=0.141 Sum_probs=58.6
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
|.+-|.+++.. ..+ ..+|.+..|||||.+.+.-+. .. ..++|++++|+..+......+...++-....
T Consensus 1 l~~eQ~~~i~~--~~~---~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~~ 75 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEG---PLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEEEQQE 75 (315)
T ss_dssp S-HHHHHHHHS---SS---EEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHHCCHC
T ss_pred CCHHHHHHHhC--CCC---CEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCccccc
Confidence 56789999986 333 789999999999998876432 22 2579999999998898888888754211000
Q ss_pred EEEEeC-CccccccCCCcEEEEchhhhhc
Q 010184 99 ICRFTS-DSKERFRGNAGVVVTTYNMVAF 126 (516)
Q Consensus 99 v~~~~~-~~~~~~~~~~~IvV~T~~~l~~ 126 (516)
.... ...........+.|.|+..+..
T Consensus 76 --~~~~~~~~~~~~~~~~~~i~T~hsf~~ 102 (315)
T PF00580_consen 76 --SSDNERLRRQLSNIDRIYISTFHSFCY 102 (315)
T ss_dssp --CTT-HHHHHHHHHCTTSEEEEHHHHHH
T ss_pred --ccccccccccccccchheeehhhhhhh
Confidence 0000 0000001125588999988865
No 250
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.11 E-value=0.033 Score=55.56 Aligned_cols=28 Identities=18% Similarity=0.159 Sum_probs=22.6
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+.++.+|+|+|||..+..++...+.+
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999998887765543
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.025 Score=59.72 Aligned_cols=127 Identities=15% Similarity=0.209 Sum_probs=64.0
Q ss_pred HHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcCC---CEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 30 QEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK---SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 30 Q~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~---~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
-.+.+..++..++ ++..++.+|.|.|||.+|..++..+.. +.. -|-.. +.. ...+... ...++..+.+.
T Consensus 21 vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~--~pCg~-C~~-C~~i~~~---~~~Dv~eidaa 93 (491)
T PRK14964 21 LVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTS--DPCGT-CHN-CISIKNS---NHPDVIEIDAA 93 (491)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCC--CCccc-cHH-HHHHhcc---CCCCEEEEecc
Confidence 3344555555554 457899999999999999888765431 111 01100 111 1122221 11233333332
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc---cceEEEEecc
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK---SHCKLGLTAT 180 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~---~~~~l~LTAT 180 (516)
... ..+.+.... +.....+. ..++.++||||+|.+....+..+++.+. .+.++.|..|
T Consensus 94 s~~-----------~vddIR~Ii----e~~~~~P~--~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatt 154 (491)
T PRK14964 94 SNT-----------SVDDIKVIL----ENSCYLPI--SSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATT 154 (491)
T ss_pred cCC-----------CHHHHHHHH----HHHHhccc--cCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 110 111111100 00011111 2467899999999998877766666553 4455666555
No 252
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.08 E-value=0.062 Score=58.17 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+-.+.+..++..++-.+ .++.+|.|+|||.++..++..+.
T Consensus 20 ~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 20 HVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 33444556666654344 48999999999999999887665
No 253
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.08 E-value=0.053 Score=55.98 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.0
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++..++.+|.|+|||.++..++..+
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHh
Confidence 4457899999999999999988664
No 254
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.07 E-value=0.019 Score=61.05 Aligned_cols=39 Identities=23% Similarity=0.135 Sum_probs=28.4
Q ss_pred HHHHHH---HHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
|...+. ..+..++ ++..++.+|.|+|||.++-.++..+.
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 555554 3344443 45789999999999999999887664
No 255
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.07 E-value=0.05 Score=47.61 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=34.9
Q ss_pred ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccC--EEEEe
Q 010184 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN--VIIQI 339 (516)
Q Consensus 291 ~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~--~vI~~ 339 (516)
.++.-.....+...+++.|+......||+++....+|+|+|+-. +||+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~ 75 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIID 75 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEE
Confidence 33443344556788999999863336888887799999999854 66665
No 256
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.02 E-value=0.064 Score=51.54 Aligned_cols=94 Identities=26% Similarity=0.272 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHh---C--CCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 28 PYQEKSLSKMFG---N--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 28 ~yQ~~al~~~~~---~--~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
+.|..++..+.. + ......++.+++|+|||..+.+++..+ +.+++++ + +.+|...+..-+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t----~~~l~~~l~~~~~~----- 148 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-T----VADIMSAMKDTFSN----- 148 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-E----HHHHHHHHHHHHhh-----
Confidence 456666664432 1 112367899999999999888877554 4566655 3 34455555432100
Q ss_pred EEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH
Q 010184 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163 (516)
Q Consensus 100 ~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~ 163 (516)
++ .+. ...+..+ ...+++||||.+......+.
T Consensus 149 ----~~-------------~~~-------------~~~l~~l--~~~dlLvIDDig~~~~s~~~ 180 (244)
T PRK07952 149 ----SE-------------TSE-------------EQLLNDL--SNVDLLVIDEIGVQTESRYE 180 (244)
T ss_pred ----cc-------------ccH-------------HHHHHHh--ccCCEEEEeCCCCCCCCHHH
Confidence 00 011 2234444 46889999999998755443
No 257
>PRK04195 replication factor C large subunit; Provisional
Probab=96.01 E-value=0.042 Score=58.61 Aligned_cols=52 Identities=13% Similarity=0.140 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHhC----CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 26 PRPYQEKSLSKMFGN----GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~----~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
..+-+.+.+..|+.. ...+..+|.+|+|+|||..+-+++...+..++.+-++
T Consensus 18 g~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnas 73 (482)
T PRK04195 18 GNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNAS 73 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccc
Confidence 344555556555542 2256789999999999999999998887666666443
No 258
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.00 E-value=0.028 Score=56.23 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=38.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+..++++|+|+|||+.|-+++...+ .+.+=+.++.|..-|+.+=.+.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhhhhhhccchHHH
Confidence 5778899999999999999998887 5666666777898888766553
No 259
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.051 Score=58.90 Aligned_cols=39 Identities=21% Similarity=0.174 Sum_probs=29.2
Q ss_pred HHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+.+..++..++ +...++.+|.|+|||.++..++..+.
T Consensus 24 v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 24 VKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 3455566666654 45677899999999999999887664
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.94 E-value=0.089 Score=51.01 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=33.1
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhc--CCCEEEEEeChhhHHHHHHHHH
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
++.+.++.+|+|.|||..+.+++..+ .+.-+.+++...++.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh
Confidence 34699999999999999988876443 2344444556666776665444
No 261
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.91 E-value=0.047 Score=61.33 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=24.3
Q ss_pred HHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 36 KMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 36 ~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.++......+.+|++|+|+|||.++-.++..+
T Consensus 196 ~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 196 QVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34445555689999999999999987776554
No 262
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.90 E-value=0.049 Score=49.84 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=34.3
Q ss_pred cEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 46 GIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+|.+|+|+|||..++.++. +.+.+++++...- ...+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~-~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE-SPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHc
Confidence 57899999999999987653 4467899887654 477777776655
No 263
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.87 E-value=0.074 Score=57.54 Aligned_cols=149 Identities=13% Similarity=0.083 Sum_probs=85.4
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---Hh-cCCCEEEEEeChhhHHHHHHHHHHhhC-------C
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CR-IKKSCLCLATNAVSVDQWAFQFKLWST-------I 94 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~-~~~~~Lvl~P~~~L~~Qw~~e~~~~~~-------~ 94 (516)
+-|+=.+-++++++.-+.+..++..|=|.|||.+...++ .. .+.+++|.+|...-+.+..+.+++.+. .
T Consensus 170 ~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~f 249 (752)
T PHA03333 170 PSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWF 249 (752)
T ss_pred CChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhcccccc
Confidence 445555556666665444578999999999997654322 22 467899999988777777766655442 1
Q ss_pred CC-CcEEEEeCCccccccCCCcEEEEchhhhh-c-----cCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh
Q 010184 95 QD-DQICRFTSDSKERFRGNAGVVVTTYNMVA-F-----GGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (516)
Q Consensus 95 ~~-~~v~~~~~~~~~~~~~~~~IvV~T~~~l~-~-----~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (516)
+. ..+....++. ..|.+..+.... . -..++ -+..+...++++|+|||+.++.+.+..++-
T Consensus 250 p~~~~iv~vkgg~-------E~I~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAAfI~~~~l~aIlP 316 (752)
T PHA03333 250 PEEFKIVTLKGTD-------ENLEYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAAFVNPGALLSVLP 316 (752)
T ss_pred CCCceEEEeeCCe-------eEEEEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECcccCCHHHHHHHHH
Confidence 11 1222222221 112222211111 0 00000 122334567999999999999998888877
Q ss_pred hcc-cceEEEEeccCCCCccc
Q 010184 168 LTK-SHCKLGLTATLVREDER 187 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~ 187 (516)
.+. ...++.+..||...+.-
T Consensus 317 ~l~~~~~k~IiISS~~~~~s~ 337 (752)
T PHA03333 317 LMAVKGTKQIHISSPVDADSW 337 (752)
T ss_pred HHccCCCceEEEeCCCCcchH
Confidence 665 34555665666544433
No 264
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.85 E-value=0.062 Score=57.35 Aligned_cols=39 Identities=23% Similarity=0.262 Sum_probs=26.7
Q ss_pred HHHHHH---HHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLS---KMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~---~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
|..++. .++..++-.. .++.+|.|+|||.++..++..+.
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 554444 4455543223 49999999999999988886653
No 265
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.85 E-value=0.035 Score=59.80 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+.-.+.+..++..++ ++..++.||.|+|||.+|..++..+.
T Consensus 22 e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 22 ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 333444555555543 44578999999999999999887654
No 266
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=95.81 E-value=0.087 Score=50.53 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=43.1
Q ss_pred HHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
...+..++.+| ++...+|.+|+|+|||..++.++.. .+.++++++... -..|..+.+..+
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee-~~~~i~~~~~~~ 71 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE-HPVQVRRNMAQF 71 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC-CHHHHHHHHHHh
Confidence 45677877764 3345677899999999999876643 467899998654 477777766654
No 267
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=95.80 E-value=0.02 Score=54.59 Aligned_cols=99 Identities=13% Similarity=0.171 Sum_probs=56.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhh
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~ 125 (516)
.+|.++.|+|||.....++... ..+.+..|+..+...|. . .. .....-.|-++.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~----~--~~----------------~~~~~~~v~s~~~~~ 57 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWL----P--DP----------------PSKSVRTVDSFLKAL 57 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccc----c--cc----------------CCccccEEeEhhhcc
Confidence 3788999999999888777665 22333345555666555 0 00 011122233332221
Q ss_pred ccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccCCC
Q 010184 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (516)
Q Consensus 126 ~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (516)
. .....+.+||||+..+..-...-++...+.. .+.+-|=|.+
T Consensus 58 ~---------------~~~~~~~liiDE~~~~~~g~l~~l~~~~~~~-~~~l~GDp~Q 99 (234)
T PF01443_consen 58 V---------------KPKSYDTLIIDEAQLLPPGYLLLLLSLSPAK-NVILFGDPLQ 99 (234)
T ss_pred c---------------ccCcCCEEEEeccccCChHHHHHHHhhccCc-ceEEEECchh
Confidence 1 0134789999999999876555455544444 3444465554
No 268
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.80 E-value=0.026 Score=56.05 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHH
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~ 82 (516)
..++..++.+|+|+|||+.|=+.+.+....+|=++ .++|+.
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv-gSElVq 223 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV-GSELVQ 223 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec-cHHHHH
Confidence 35678899999999999999999988887777666 455555
No 269
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.78 E-value=0.1 Score=56.92 Aligned_cols=63 Identities=16% Similarity=0.138 Sum_probs=47.9
Q ss_pred HHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh-----cCCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 30 QEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 30 Q~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
|.+.+.++... ......++.++||+|||++++.++.. .++++||++||++|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 66666655432 11247788899999999999887632 36899999999999999998877654
No 270
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.034 Score=60.41 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+.+..++..++ ++..++.+|.|.|||.++..++..+.
T Consensus 31 ~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 31 AMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 33445555666654 45678999999999999999887654
No 271
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.77 E-value=0.065 Score=54.14 Aligned_cols=46 Identities=13% Similarity=0.110 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHh-----CCCCcccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 26 PRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 26 Lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
-++...+.+..++. +...+..++.+|+|+|||..+..++...+..+
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 34444444544443 22345789999999999999998887776443
No 272
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.74 E-value=0.091 Score=54.56 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 31 EKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 31 ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
.+.+..++.+++- +..++.+|.|+|||.+|..++..+..
T Consensus 25 ~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 25 TRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3445566666543 34678999999999999998876643
No 273
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.73 E-value=0.078 Score=54.30 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=60.9
Q ss_pred HHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
...++.++.++ .+.-.+|.+++|+|||..++.++... +++++++...- ...|+.....++ +.....
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rl-g~~~~~------- 138 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRL-GISTEN------- 138 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHc-CCCccc-------
Confidence 34566777654 22356788999999999988776443 46888887643 467766655543 332211
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
+.+..... ...+.+.+...++++||||+.+.+.
T Consensus 139 ----------l~l~~e~~----------le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 ----------LYLLAETN----------LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ----------EEEEccCc----------HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 22221111 1334455555688999999998763
No 274
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.73 E-value=0.067 Score=60.29 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++-.+.|..++.+++-.+ .|+.+|.|+|||.++..++..+.
T Consensus 21 e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 21 EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 334455666676654334 58999999999999999886664
No 275
>PRK08116 hypothetical protein; Validated
Probab=95.67 E-value=0.13 Score=50.35 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=29.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e 87 (516)
..+|.+++|+|||..+.+++..+ +.+++++ +...++..+...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 47899999999999998877553 4555544 445555544443
No 276
>PHA02244 ATPase-like protein
Probab=95.64 E-value=0.11 Score=52.56 Aligned_cols=43 Identities=12% Similarity=0.161 Sum_probs=33.7
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
...+..++..+ .+.+|.+|+|+|||..+-.++...+.+++.+.
T Consensus 109 ~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 109 TADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 33445566655 48999999999999999998888888877764
No 277
>PRK04328 hypothetical protein; Provisional
Probab=95.63 E-value=0.12 Score=50.01 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=41.7
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.++..++++| ++...+|.+|+|+|||..++.++.. .+.+++++.-.. -..+..+.+..+
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee-~~~~i~~~~~~~ 73 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE-HPVQVRRNMRQF 73 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC-CHHHHHHHHHHc
Confidence 4677888764 2345677899999999998877643 457888888544 366666666654
No 278
>PRK06921 hypothetical protein; Provisional
Probab=95.61 E-value=0.053 Score=52.97 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=27.0
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHH
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQ 83 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Q 83 (516)
..+.++.+++|+|||..+.+++..+ +.+++++. ...++.+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHH
Confidence 3578999999999998888776543 34555544 3444443
No 279
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.60 E-value=0.11 Score=55.68 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=26.2
Q ss_pred HHHHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 33 SLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 33 al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+..++..++. +..++.+|.|+|||.++..++..+.
T Consensus 27 ~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 27 SLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 44555555443 3467899999999999999887654
No 280
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.53 E-value=0.084 Score=55.56 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=62.2
Q ss_pred HHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
...++.+++++ .+.-.+|.+++|+|||..++.++... +.+++++.-.- ...|+.....++ +.....
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rl-g~~~~~------- 136 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERL-GLPSDN------- 136 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHc-CCChhc-------
Confidence 34567777754 22355788999999999988877543 57899988644 467776665543 332111
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
+.+..... ...+...+...+.++||+|+.+.+.
T Consensus 137 ----------l~~~~e~~----------l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 ----------LYLLAETN----------LEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred ----------EEEeCCCC----------HHHHHHHHHhhCCCEEEEechhhhc
Confidence 22222111 2344455555678999999998764
No 281
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.52 E-value=0.16 Score=51.99 Aligned_cols=44 Identities=23% Similarity=0.194 Sum_probs=33.4
Q ss_pred CCCCHHHHHHHHHHHh----CCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.=|+.|.+.+..++. ++.+.+.+|.+|+|+|||.++-.++..+
T Consensus 17 l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 17 IVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4568888888877654 3344578999999999999887776543
No 282
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.52 E-value=0.11 Score=51.07 Aligned_cols=131 Identities=11% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCCCHHHHHHHHHH---HhC---CCCcccEEEecCCCcHHHHHHHHHHhcC---------CCEE-EEEeChhhHHHHHHH
Q 010184 24 AQPRPYQEKSLSKM---FGN---GRARSGIIVLPCGAGKSLVGVSAACRIK---------KSCL-CLATNAVSVDQWAFQ 87 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~---~~~~~~il~~~tG~GKTl~~i~~i~~~~---------~~~L-vl~P~~~L~~Qw~~e 87 (516)
.--+|-=.++++.+ +.. .+..+.+|++++|-|||.+.-.+...-. .|++ |-+|...-..-.+..
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 33445545555543 332 3446889999999999998877764321 2444 445666556666666
Q ss_pred HHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------h
Q 010184 88 FKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------M 161 (516)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~ 161 (516)
+-..++.+... . . +...+ .......+......++||||.|++.+- .
T Consensus 116 IL~~lgaP~~~------~--------~-----~~~~~---------~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~ 167 (302)
T PF05621_consen 116 ILEALGAPYRP------R--------D-----RVAKL---------EQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE 167 (302)
T ss_pred HHHHhCcccCC------C--------C-----CHHHH---------HHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH
Confidence 66655544210 0 0 00000 022335555678889999999997642 3
Q ss_pred HHHHHhhcccce--EEEEeccCC
Q 010184 162 FRKVISLTKSHC--KLGLTATLV 182 (516)
Q Consensus 162 ~~~~l~~~~~~~--~l~LTATp~ 182 (516)
+-.+++.+.... -+.+-||+.
T Consensus 168 ~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 168 FLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhhccCCCeEEeccHH
Confidence 334445443332 244557763
No 283
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.11 Score=57.36 Aligned_cols=95 Identities=14% Similarity=0.207 Sum_probs=66.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC--CEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEch
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~--~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~ 121 (516)
+++++++|||.|||.++-+++..+.+ ..+|-..-++-.+ +....+..+.|+.-|+.-.|+.
T Consensus 522 gsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E--kHsVSrLIGaPPGYVGyeeGG~--------------- 584 (786)
T COG0542 522 GSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME--KHSVSRLIGAPPGYVGYEEGGQ--------------- 584 (786)
T ss_pred eEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH--HHHHHHHhCCCCCCceeccccc---------------
Confidence 47889999999999999999988763 5677666554222 3345566677766555433331
Q ss_pred hhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 122 ~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
+.+.++...+.+|.+||+...-...|.-+++.+.
T Consensus 585 ---------------LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 585 ---------------LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred ---------------hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 1234445778999999999988888777777664
No 284
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.49 E-value=0.042 Score=56.87 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.6
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.+++.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 34678999999999999999998888877666543
No 285
>PRK12377 putative replication protein; Provisional
Probab=95.46 E-value=0.075 Score=51.22 Aligned_cols=43 Identities=14% Similarity=0.149 Sum_probs=29.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e 87 (516)
.+.+|.+|+|+|||..+.+++..+ +.+++++ +...|+.+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i-~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVV-TVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE-EHHHHHHHHHHH
Confidence 477999999999999888877544 3455444 445666655443
No 286
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.44 E-value=0.14 Score=51.45 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHH---HhC--CCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHH
Q 010184 24 AQPRPYQEKSLSKM---FGN--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQ 83 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Q 83 (516)
..++..+..++... ..+ ....+.++.+|||+|||..+.+++..+ +.+++++ +...|..+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEI 225 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHH
Confidence 36777777777632 221 123588999999999999888776543 3455554 34444443
No 287
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.44 E-value=0.15 Score=62.90 Aligned_cols=136 Identities=13% Similarity=0.110 Sum_probs=81.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.+.|.+-|.+|+..++.... +-.+|.++.|+|||.+.-.++ ...+.++++++|+..-+....++.- +....+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g----~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIP----RLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhc----chhhhH
Confidence 46799999999999887632 478999999999997755443 4457899999999875655544321 111000
Q ss_pred EEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc-cceEEEEe
Q 010184 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGLT 178 (516)
Q Consensus 100 ~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~-~~~~l~LT 178 (516)
..+.... + ...-..|.+.+... ...+ ..-++|||||+-.+....+..++.... ...+|.|-
T Consensus 502 ~~~l~~l---~---~~~~~~tv~~fl~~----------~~~l--~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlv 563 (1960)
T TIGR02760 502 ITWVKNL---F---NDDQDHTVQGLLDK----------SSPF--SNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILL 563 (1960)
T ss_pred HHHHHhh---c---ccccchhHHHhhcc----------cCCC--CCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEE
Confidence 0000000 0 00011122222110 0001 345799999999999998888888653 44566655
Q ss_pred ccC
Q 010184 179 ATL 181 (516)
Q Consensus 179 ATp 181 (516)
|=+
T Consensus 564 GD~ 566 (1960)
T TIGR02760 564 NDS 566 (1960)
T ss_pred cCh
Confidence 443
No 288
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.40 E-value=0.057 Score=64.26 Aligned_cols=127 Identities=12% Similarity=0.092 Sum_probs=77.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHH---HHhc----CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~---i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
..|.+-|.+|+..++.... +-.+|.+..|+|||.+.-.+ +..+ +..++.++||..-+... .. .+++.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L----~e-~Gi~A 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEM----RS-AGVDA 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHH----HH-hCchH
Confidence 3799999999999887532 47899999999999875332 2222 35688899998644433 22 13221
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhccc-ceEE
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKL 175 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~-~~~l 175 (516)
. |..++...... ......-......++||||+-.+.+..+..++..+.. ..++
T Consensus 908 ~----------------------TIasfL~~~~~----~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garv 961 (1623)
T PRK14712 908 Q----------------------TLASFLHDTQL----QQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 961 (1623)
T ss_pred h----------------------hHHHHhccccc----hhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEE
Confidence 1 22222111000 0000000012347999999999999988888877764 3677
Q ss_pred EEeccCC
Q 010184 176 GLTATLV 182 (516)
Q Consensus 176 ~LTATp~ 182 (516)
.|-|=+.
T Consensus 962 VLVGD~~ 968 (1623)
T PRK14712 962 VASGDTD 968 (1623)
T ss_pred EEEcchh
Confidence 7776543
No 289
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.38 E-value=0.024 Score=52.86 Aligned_cols=102 Identities=18% Similarity=0.218 Sum_probs=58.3
Q ss_pred hCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEE
Q 010184 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (516)
Q Consensus 39 ~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV 118 (516)
..+...+.++.+|+|.|||.....++..+-++ ..++..... +.++ ..+.+||=
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~------------~~ke~vLEL-NASd--------------eRGIDvVR 96 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLGD------------SYKEAVLEL-NASD--------------ERGIDVVR 96 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhCh------------hhhhHhhhc-cCcc--------------ccccHHHH
Confidence 33444688999999999999998888665332 112222221 1111 11233333
Q ss_pred EchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhcccceEEEE
Q 010184 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGL 177 (516)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~~~~~~l~L 177 (516)
.+..+++.. .-.+...+...||+|||+.+.+- ..++.+..+....+..|
T Consensus 97 n~IK~FAQ~----------kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFal 148 (333)
T KOG0991|consen 97 NKIKMFAQK----------KVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAL 148 (333)
T ss_pred HHHHHHHHh----------hccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhh
Confidence 344444331 11223356779999999999864 56666776655544443
No 290
>PRK14974 cell division protein FtsY; Provisional
Probab=95.37 E-value=0.21 Score=50.36 Aligned_cols=113 Identities=18% Similarity=0.112 Sum_probs=59.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeC---hhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN---AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~---~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (516)
.-.++++++|+|||.+...++..+ +.+++++..- .....||...... ++++ ++......
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~-lgv~-----v~~~~~g~--------- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAER-LGVK-----VIKHKYGA--------- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHH-cCCc-----eecccCCC---------
Confidence 456788999999999777665433 4566666533 3445666543333 2322 11111000
Q ss_pred EEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhccc-ceEEEEeccCC
Q 010184 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKS-HCKLGLTATLV 182 (516)
Q Consensus 118 V~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~~~-~~~l~LTATp~ 182 (516)
.+..+. ...+........++||+|.+++...+ ..+++...+.. ...+.++||..
T Consensus 206 --dp~~v~---------~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 --DPAAVA---------YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred --CHHHHH---------HHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 011110 11122223356789999999999743 22333333333 34577788764
No 291
>CHL00181 cbbX CbbX; Provisional
Probab=95.37 E-value=0.074 Score=52.57 Aligned_cols=22 Identities=23% Similarity=0.116 Sum_probs=18.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (516)
+.++.+|+|+|||.+|-.++..
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~ 82 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADI 82 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4688999999999999887654
No 292
>PRK06893 DNA replication initiation factor; Validated
Probab=95.36 E-value=0.1 Score=49.79 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=22.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
..+|.+|+|+|||-.+.+++... +.++.++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 46899999999998877766442 34555543
No 293
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.36 E-value=0.035 Score=61.41 Aligned_cols=80 Identities=19% Similarity=0.268 Sum_probs=60.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
...|.+.|.+|+.. .. ++.+|.+..|+|||.+.+.-+..+ ..++|+++.++..+....+.+...++.
T Consensus 194 ~~~L~~~Q~~av~~--~~---~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~- 267 (684)
T PRK11054 194 SSPLNPSQARAVVN--GE---DSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT- 267 (684)
T ss_pred CCCCCHHHHHHHhC--CC---CCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-
Confidence 46799999999873 22 267889999999999887755321 257999999999888888888876431
Q ss_pred CCcEEEEeCCccccccCCCcEEEEchhhhhc
Q 010184 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (516)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~ 126 (516)
..|.|.|+..+..
T Consensus 268 ------------------~~v~v~TFHSlal 280 (684)
T PRK11054 268 ------------------EDITARTFHALAL 280 (684)
T ss_pred ------------------CCcEEEeHHHHHH
Confidence 2477889888764
No 294
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.36 E-value=0.15 Score=51.10 Aligned_cols=41 Identities=15% Similarity=0.159 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++.+.+.+..++..+.....++.+|.|+|||.++-.++..+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 44455566666666544468999999999999998887665
No 295
>PF13173 AAA_14: AAA domain
Probab=95.34 E-value=0.16 Score=43.57 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=24.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC--CCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~ 75 (516)
+-.+|.+|.|+|||.....++.... ..++++-
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~ 36 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYIN 36 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeec
Confidence 3678999999999999988887665 5555553
No 296
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.33 E-value=0.14 Score=55.86 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 29 YQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 29 yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+..+.+..++..++- +..++.+|.|+|||.++..++..+.
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 444556666666543 3458999999999999998886654
No 297
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.30 E-value=0.16 Score=51.77 Aligned_cols=113 Identities=18% Similarity=0.160 Sum_probs=59.5
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc----C-CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~----~-~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (516)
++..++++|||+|||.+...++... + .++.+++. -..-.--.++++.|..+-...+ ..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~-D~~R~ga~EqL~~~a~~~gv~~----------------~~ 199 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTT-DSYRIGGHEQLRIFGKILGVPV----------------HA 199 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEec-ccccccHHHHHHHHHHHcCCce----------------Ee
Confidence 3577899999999999988777432 3 35555543 2221111233444432211111 11
Q ss_pred EEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHHHHhhcc-----cceEEEEeccCCCC
Q 010184 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLTK-----SHCKLGLTATLVRE 184 (516)
Q Consensus 118 V~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~~~-----~~~~l~LTATp~~~ 184 (516)
+.+...+ ...+..+ .+.++|+||++=+.... .....+..+. ....|.|+||--..
T Consensus 200 ~~~~~~l----------~~~l~~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 200 VKDGGDL----------QLALAEL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred cCCcccH----------HHHHHHh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 2222222 2223344 45689999999776533 3333333331 23578889998543
No 298
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.29 E-value=0.14 Score=54.12 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=26.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQW 84 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw 84 (516)
...+|.+|+|+|||..+-+++..+ +.+++++ +...+...+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHH
Confidence 457899999999999887776544 2345555 444444443
No 299
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.27 E-value=0.22 Score=51.63 Aligned_cols=44 Identities=20% Similarity=0.152 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHH----hCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~----~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.=|+-|.+.+...+ .++.+.+.+|.+|+|+|||.++-.++..+
T Consensus 32 l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 32 LPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344677777766554 23344678999999999999988887654
No 300
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.26 E-value=0.073 Score=59.76 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=60.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.|.|-|.+++.. .. +.++|.+..|||||.+...-+..+ ..++|+|+.|+..+...++.+.+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~---g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~-- 76 (715)
T TIGR01075 4 GLNDKQREAVAA--PP---GNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS-- 76 (715)
T ss_pred ccCHHHHHHHcC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc--
Confidence 588999999874 22 378999999999999876644331 2469999999988998888888864311
Q ss_pred cEEEEeCCccccccCCCcEEEEchhhhhcc
Q 010184 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (516)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~ 127 (516)
...+.|.|+..++..
T Consensus 77 ---------------~~~~~i~TfHs~~~~ 91 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHR 91 (715)
T ss_pred ---------------ccCcEEEcHHHHHHH
Confidence 134789999888653
No 301
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.26 E-value=0.053 Score=60.21 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----C---CCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.|.|-|.+|+.. ..+ .+++.+..|||||.+.+.-+..+ + .++|+|+.|+..+.+.++.+.+.++
T Consensus 2 ~Ln~~Q~~av~~--~~g---~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEF--VTG---PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhC--CCC---CEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 488999999874 223 78899999999999877644331 2 4699999999989998888887654
No 302
>PRK05642 DNA replication initiation factor; Validated
Probab=95.23 E-value=0.14 Score=48.95 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=21.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
...+|.+|+|+|||-.+-+++.. .+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 35689999999999876555422 245666554
No 303
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.23 E-value=0.061 Score=64.82 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=78.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---c----CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---I----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
..|.+-|.+|+..++... .+-.+|.+..|+|||.+.-.++.. + +..++.++||.--+... .. .+++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L----~e-~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEM----RS-AGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHH----Hh-cCcch
Confidence 468999999999988753 147899999999999875444322 1 34688899998645432 22 23221
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhccc-ceEE
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKL 175 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~-~~~l 175 (516)
.|...+....... .. -........+++||||+-.+.+..+..++..+.. ..++
T Consensus 1040 ----------------------~TI~s~L~~~~~~---~~-~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garv 1093 (1747)
T PRK13709 1040 ----------------------QTLASFLHDTQLQ---QR-SGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 1093 (1747)
T ss_pred ----------------------hhHHHHhcccccc---cc-cccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEE
Confidence 1222222110000 00 0000012347999999999999988888887764 4677
Q ss_pred EEeccC
Q 010184 176 GLTATL 181 (516)
Q Consensus 176 ~LTATp 181 (516)
.|-|=+
T Consensus 1094 VLVGD~ 1099 (1747)
T PRK13709 1094 VSSGDT 1099 (1747)
T ss_pred EEecch
Confidence 776654
No 304
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.22 E-value=0.058 Score=55.80 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.+++.+|.+|+|+|||..+-+++.....+++.+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 45688999999999999999998888877776654
No 305
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.14 Score=52.27 Aligned_cols=47 Identities=19% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCCCCCHHHHHHHHHH----HhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 22 PHAQPRPYQEKSLSKM----FGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~----~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
....-|+-|.+.+... +.++.+.+.+|.++||+|||.++-.++.++.
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 3467788998887754 4556677899999999999999988886654
No 306
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.21 E-value=0.055 Score=60.47 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=54.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l 124 (516)
+.++++|+|+|||.++-.++..++.+++.+- -++..+ .....++++.++.-++ |+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id-~se~~~--~~~~~~LiG~~~gyvg--------------------~~~- 545 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD-MSEYME--RHTVSRLIGAPPGYVG--------------------FDQ- 545 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEee-chhhcc--cccHHHHcCCCCCccc--------------------ccc-
Confidence 5789999999999999988888876655443 222111 1123444443321111 000
Q ss_pred hccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
...+.+.+....++++++||++.+....+..++..+
T Consensus 546 ---------~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 546 ---------GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred ---------cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 001122333466789999999999877766666554
No 307
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.20 E-value=0.09 Score=46.44 Aligned_cols=34 Identities=18% Similarity=0.289 Sum_probs=26.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChh
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (516)
.+|.+|+|+|||..+..++... +++++++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~ 38 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE 38 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence 4789999999999888776543 567887776554
No 308
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.20 E-value=0.18 Score=50.64 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=31.3
Q ss_pred CCCHHHHHHHHHH---HhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKM---FGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~---~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.++|||....+.+ +..++ ++..++.+|.|.||+..+..++..+
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 3578887776654 44444 3456688999999999999888554
No 309
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.074 Score=56.31 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.++..++.+|+|+|||..|-+++.+++-|++=|.-+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp 257 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP 257 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch
Confidence 557888999999999999999999999998877644
No 310
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.19 E-value=0.16 Score=50.78 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=33.3
Q ss_pred CCCHHHHHHHHHHHh---CCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKMFG---NGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~---~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.++|+|..+.+.+.. .++ ++..++.+|.|.||+..+..++..+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 588999999886643 343 3457888999999999999888654
No 311
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.15 E-value=0.2 Score=52.36 Aligned_cols=111 Identities=22% Similarity=0.219 Sum_probs=58.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV 118 (516)
+..++++|+|+|||.++..++... +.++.+|.--.- ..--.+++..|....+..+ .++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~-r~~a~eqL~~~a~~~~vp~----------------~~~ 284 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY-RIGAVEQLKTYAKIMGIPV----------------EVV 284 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc-HHHHHHHHHHHHHHhCCce----------------Ecc
Confidence 467888999999998887665322 345666653221 0001234444432211111 112
Q ss_pred EchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhh--cccceEEEEeccCCC
Q 010184 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISL--TKSHCKLGLTATLVR 183 (516)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~--~~~~~~l~LTATp~~ 183 (516)
.++..+ ...+..+ ..+++||||.+-+.... .+..++.. ......|.|+||...
T Consensus 285 ~~~~~l----------~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 285 YDPKEL----------AKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY 344 (424)
T ss_pred CCHHhH----------HHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH
Confidence 222222 2233444 45799999999776643 33444441 122456888998754
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.14 E-value=0.24 Score=50.34 Aligned_cols=39 Identities=21% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHHH---HHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
|.++.. .++..++ ++..++.+|.|.|||..+..++..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 444444 4455553 34578899999999999998886653
No 313
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.12 E-value=0.19 Score=50.82 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++|||...-+.+... .-++..++.+|.|.||+..+..++..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 578888888877643 234466789999999999998887554
No 314
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.11 E-value=0.095 Score=58.85 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=61.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.|.|-|.+|+.. .. +..+|.+..|||||.+...-+..+ ..++|+|+-|+..+...++.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~--~~---g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~-- 81 (721)
T PRK11773 9 SLNDKQREAVAA--PL---GNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS-- 81 (721)
T ss_pred hcCHHHHHHHhC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC--
Confidence 589999999874 22 378999999999999877644321 2569999999998999888888864311
Q ss_pred cEEEEeCCccccccCCCcEEEEchhhhhcc
Q 010184 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (516)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~ 127 (516)
...+.|.|+..++..
T Consensus 82 ---------------~~~~~i~TfHs~~~~ 96 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHR 96 (721)
T ss_pred ---------------CCCCEEEcHHHHHHH
Confidence 124779999888764
No 315
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.11 E-value=0.22 Score=54.05 Aligned_cols=41 Identities=20% Similarity=0.252 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++-.+.+..++..++ ++..++.+|.|+|||.++-.++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 22 EHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334445556665543 34467899999999999988876543
No 316
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.10 E-value=0.28 Score=54.75 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHhC----CCCccc-EEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFGN----GRARSG-IIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~----~~~~~~-il~~~tG~GKTl~~i~~i~~~ 67 (516)
..=|+-|.+.|...+.. ..+.++ .|.++||+|||.++-.++..+
T Consensus 757 LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 757 LPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45588888888765542 222344 489999999999988776443
No 317
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.05 E-value=0.2 Score=54.84 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=26.2
Q ss_pred HHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+..++..++ +...++.+|.|+|||.++..++..+.
T Consensus 28 L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~ 63 (620)
T PRK14948 28 LKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLN 63 (620)
T ss_pred HHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhc
Confidence 444555543 34568999999999999999987765
No 318
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.04 E-value=0.42 Score=48.77 Aligned_cols=114 Identities=25% Similarity=0.247 Sum_probs=62.9
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (516)
++...|++|||.|||.+-.-++++. ++++-+|+.-.- .---.++|+.|..+-+ -+-.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY-RIGA~EQLk~Ya~im~----------------vp~~v 265 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY-RIGAVEQLKTYADIMG----------------VPLEV 265 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc-hhhHHHHHHHHHHHhC----------------CceEE
Confidence 4678899999999998766555332 244544443221 1112334444432211 12245
Q ss_pred EEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-hh----HHHHHhhc-ccceEEEEeccCCCCc
Q 010184 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HM----FRKVISLT-KSHCKLGLTATLVRED 185 (516)
Q Consensus 118 V~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~----~~~~l~~~-~~~~~l~LTATp~~~~ 185 (516)
+.++.-+ ...+..+ ...++|.+|=+=+..- .. ....+... .....|.||||--..|
T Consensus 266 v~~~~el----------~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~d 327 (407)
T COG1419 266 VYSPKEL----------AEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYED 327 (407)
T ss_pred ecCHHHH----------HHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHH
Confidence 5666655 3334555 5568999998877653 22 22233322 2345688999986544
No 319
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.04 E-value=0.05 Score=49.53 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=26.8
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
-++.+||+||||...+..+.+ .+++++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 478899999999988877643 4788999999764
No 320
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.00 E-value=0.16 Score=52.82 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=22.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~ 75 (516)
..+|.+|+|+|||..+.+++..+ +.+++++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 46899999999999887766443 34566653
No 321
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.96 E-value=0.078 Score=60.34 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|+-+.+-+-.++......+.+|++|+|.|||.++-.++..+
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 55555555556665555689999999999999998777554
No 322
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.95 E-value=0.11 Score=55.17 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=25.4
Q ss_pred HHHHHHhCCCCcc-cEEEecCCCcHHHHHHHHHHhcC
Q 010184 33 SLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 33 al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+..++.+++-.+ .++.+|.|+|||.++..++..+.
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444555543333 47899999999999998887654
No 323
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.82 E-value=0.15 Score=48.73 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=32.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
...++.+|+|+|||..+..++.. .+.++++++..-. ..+..+.+..
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~ 73 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMS 73 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHH
Confidence 46788899999999998776643 3568888885433 4555555544
No 324
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.82 E-value=0.15 Score=63.08 Aligned_cols=126 Identities=14% Similarity=0.087 Sum_probs=78.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHH---HH----HhcCCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS---AA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~---~i----~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
...|.+.|.+|+..++.... +-.+|.+..|+|||.+... ++ ...+.+++.++|+..-+.+. +. .++.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L----~~-~g~~ 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKD-RFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGEL----KS-AGVQ 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHH----Hh-cCCc
Confidence 46799999999999887532 3678889999999987732 22 22356799999997745433 22 1322
Q ss_pred CCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc-cceE
Q 010184 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCK 174 (516)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~-~~~~ 174 (516)
. .|..++...... ...-.. .....++||||+-.+.+..+..++..+. ...+
T Consensus 1091 a----------------------~Ti~s~l~~~~~----~~~~~~--~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak 1142 (1960)
T TIGR02760 1091 A----------------------QTLDSFLTDISL----YRNSGG--DFRNTLFILDESSMVSNFQLTHATELVQKSGSR 1142 (1960)
T ss_pred h----------------------HhHHHHhcCccc----ccccCC--CCcccEEEEEccccccHHHHHHHHHhccCCCCE
Confidence 1 122222110000 000000 1344699999999999999888887653 4467
Q ss_pred EEEeccCC
Q 010184 175 LGLTATLV 182 (516)
Q Consensus 175 l~LTATp~ 182 (516)
+.|.|=+.
T Consensus 1143 ~vlvGD~~ 1150 (1960)
T TIGR02760 1143 AVSLGDIA 1150 (1960)
T ss_pred EEEeCChh
Confidence 77776543
No 325
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.81 E-value=0.21 Score=47.74 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=42.8
Q ss_pred HHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
...+..++.++ .+...++.+++|+|||..+..++.. .+.+++++.-... ..+..+++..+
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 45677777765 2335577799999999999887643 4678888886554 66777777665
No 326
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.74 E-value=0.1 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.104 Sum_probs=18.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (516)
+.++.+|+|+|||.+|-.++..
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~ 81 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQI 81 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5788899999999998766543
No 327
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.64 E-value=0.078 Score=54.38 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+++.+|.+|+|+|||.++-+++.....+++-+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 456899999999999999999988877765554
No 328
>PTZ00293 thymidine kinase; Provisional
Probab=94.61 E-value=0.31 Score=45.55 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=27.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
--++.+||++|||...+..+.+ .+++++++-|...
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD 43 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc
Confidence 3478899999999877766643 4689999999764
No 329
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.56 E-value=0.33 Score=53.62 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.+..++..++ ++..++.||.|.|||.+|-.++..+.
T Consensus 27 v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 27 VQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 344555666554 34458999999999999998886654
No 330
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.52 E-value=0.073 Score=50.58 Aligned_cols=58 Identities=17% Similarity=0.316 Sum_probs=40.6
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHH---hc-CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RI-KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~---~~-~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+..++.+| ++...+|.+|+|+|||..++.++. .. +.++++++.... ..++.+.+..+
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~-~~~l~~~~~s~ 70 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP-PEELIENMKSF 70 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS--HHHHHHHHHTT
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC-HHHHHHHHHHc
Confidence 466677554 334668889999999999987663 34 789999996554 77788888765
No 331
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.50 E-value=0.14 Score=54.81 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=28.0
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.+++.+|.+|+|+|||..+-+++...+.+++.+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 3457899999999999999999888877766554
No 332
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.42 E-value=0.48 Score=43.51 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=25.5
Q ss_pred HHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+...+..++ +...++.+|.|.|||..+..++..+.
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 444554443 35678999999999999988886653
No 333
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.41 E-value=0.23 Score=46.45 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=30.8
Q ss_pred HHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeCh
Q 010184 36 KMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (516)
Q Consensus 36 ~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~ 78 (516)
.++++| .+.-..|.+|+|+|||..++.++.. .+.+++++....
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 455554 2345678899999999999887743 356888888754
No 334
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=94.41 E-value=0.51 Score=50.56 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCc-ccEEEecCCCcHHHHHHHHHHhc
Q 010184 32 KSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 32 ~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.+..++..++-. ..++.+|.|+|||.++..++..+
T Consensus 24 ~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 24 KTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 4455556655433 34899999999999998888665
No 335
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.40 E-value=0.17 Score=57.94 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|.+-++.+. ......+.+|++|+|.|||.++-.++..+
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444555544 35455689999999999999988777554
No 336
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.40 E-value=0.44 Score=45.20 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 29 YQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 29 yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
.....+..+... ...+..+|.+|+|+|||-.+.++.... +.+++++.
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 455566665442 223578999999999998887766443 34455444
No 337
>CHL00176 ftsH cell division protein; Validated
Probab=94.40 E-value=0.19 Score=55.13 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.9
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+++.+|.+|+|+|||..+-+++...+.+++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 457899999999999999999888887776654
No 338
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.40 E-value=0.3 Score=52.16 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 28 PYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 28 ~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+--...++.+++++ ++...+|.+|+|+|||..++.++. +.+.+++++.-- +-..|.......+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e-Es~~~i~~~~~~l 313 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE-ESRAQLLRNAYSW 313 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee-CCHHHHHHHHHHc
Confidence 34456788888875 234567789999999999988774 345689998854 4588888887765
No 339
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.38 E-value=0.29 Score=48.96 Aligned_cols=37 Identities=11% Similarity=0.245 Sum_probs=27.0
Q ss_pred CCccEEEEccCccCCch---hHHHHHhhcccceEEEEecc
Q 010184 144 REWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGLTAT 180 (516)
Q Consensus 144 ~~~~~vIlDEaH~~~~~---~~~~~l~~~~~~~~l~LTAT 180 (516)
..+.+||+|||+.+... .+.+.+..-+....+.|++.
T Consensus 108 ~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 46789999999999865 55555665566666777665
No 340
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.35 E-value=0.4 Score=47.98 Aligned_cols=44 Identities=11% Similarity=0.060 Sum_probs=32.8
Q ss_pred CCCCHHHHHHHHHHH---hCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMF---GNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~---~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.++|||....+.+. ..++ ++..++.+|.|.||+..+..++..+
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 457889888777653 3443 4567888999999999998887554
No 341
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.34 Score=52.97 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=27.1
Q ss_pred HHHHH---HHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSL---SKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al---~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
|..++ ..++..++- +..++.+|.|+|||.++..++..+.
T Consensus 21 q~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 21 QEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred CHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44444 444554432 3348999999999999999887664
No 342
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.33 E-value=0.23 Score=49.67 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=37.4
Q ss_pred HHHHHHHHh-CCC--CcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHH
Q 010184 31 EKSLSKMFG-NGR--ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ 83 (516)
Q Consensus 31 ~~al~~~~~-~~~--~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Q 83 (516)
..+++.++. +|- ++-..|.+|+|+|||..++.++.. .++++++|-.-..+-.+
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 466788887 542 345578899999999998876643 45788888766554443
No 343
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.32 E-value=0.14 Score=56.93 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=48.9
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
|.|-|.+++.. .. +.+++.+..|+|||.+.+.-+..+ .+.+|+|+.|+..+.+.++.+.+.++
T Consensus 2 Ln~~Q~~av~~--~~---~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VT---GPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CC---CCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 77899998874 22 378999999999998877644321 24699999888889999999988654
No 344
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.32 E-value=0.29 Score=49.47 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHh---CCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKMFG---NGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~---~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.++|||....+.+.+ .++ ++..++.+|.|.||+..+..++..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 578898888776643 343 4456788999999999999887554
No 345
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.30 E-value=0.44 Score=48.47 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=27.4
Q ss_pred HHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+.+..++..++ ++..++.+|.|+|||..+..++..+.
T Consensus 22 ~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 22 IVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444555555543 33468899999999999988876654
No 346
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.26 E-value=0.16 Score=48.39 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=31.9
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHH
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~ 82 (516)
.+++.++.+|+|+|||.+|-+++...+.|+|.+--+. |+-
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~-liG 189 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE-LIG 189 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHH-HHH
Confidence 3578999999999999999999988888877665433 444
No 347
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.26 E-value=0.091 Score=59.13 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=29.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
+++.+|.+|+|+|||..+-+++...+.+++.+-+.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~ 521 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGP 521 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehH
Confidence 45678899999999999999998888887776653
No 348
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.24 E-value=0.16 Score=58.00 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|..-++.++ ......+.+|++|+|.|||.++-.++..+
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 444455554 34445689999999999999998877655
No 349
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.18 E-value=0.5 Score=51.22 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=27.4
Q ss_pred HHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.+..++.+++ ++..++.+|.|.|||.++..++..+.
T Consensus 25 v~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 25 VETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 344555565554 33468999999999999999887654
No 350
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.15 E-value=0.25 Score=48.68 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=23.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc----C-CCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~-~~~Lvl~ 75 (516)
+..++++|+|+|||.++..++... + .++.+|.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 456788999999999887766432 3 4666665
No 351
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.13 E-value=0.59 Score=51.15 Aligned_cols=40 Identities=20% Similarity=0.134 Sum_probs=28.5
Q ss_pred HHHH---HHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 30 QEKS---LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 30 Q~~a---l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
|..+ +..++.+++ ++..++.+|.|.|||.+|..++..+..
T Consensus 21 Qe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 21 QEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred cHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5544 444555544 345679999999999999999877654
No 352
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.09 E-value=0.28 Score=55.00 Aligned_cols=26 Identities=23% Similarity=0.341 Sum_probs=20.8
Q ss_pred CCCCcccEEEecCCCcHHHHHHHHHH
Q 010184 40 NGRARSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 40 ~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.....+.+|.+|+|+|||.++-.++.
T Consensus 204 r~~~~n~LLvGppGvGKT~lae~la~ 229 (758)
T PRK11034 204 RRRKNNPLLVGESGVGKTAIAEGLAW 229 (758)
T ss_pred ccCCCCeEEECCCCCCHHHHHHHHHH
Confidence 33446889999999999999877664
No 353
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.08 E-value=0.11 Score=55.70 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=40.3
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+..++.+|+|+|||+.+-+++...+.+++-+-.. .+...|..+..+-
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek~ 323 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEKN 323 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHHH
Confidence 34678999999999999999999888888888776 7888888777663
No 354
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.05 E-value=0.12 Score=54.87 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
.+++.+|.+|+|+|||..+-+++..+..+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 34678999999999999998888776544
No 355
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.03 E-value=0.61 Score=51.16 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.+..++.+++ ++..++.+|.|.|||.++..++..+.
T Consensus 26 ~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 26 TTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 334555565554 34468999999999998888876654
No 356
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.03 E-value=0.19 Score=50.30 Aligned_cols=57 Identities=19% Similarity=0.237 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHh-CCC--CcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHH
Q 010184 28 PYQEKSLSKMFG-NGR--ARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQW 84 (516)
Q Consensus 28 ~yQ~~al~~~~~-~~~--~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw 84 (516)
|--..+++.+++ +|- ++-..|.+|.|+|||..++.++. ..++++++|.+...+-.++
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 344567888887 542 34567889999999999988764 3467899998877655443
No 357
>PRK09354 recA recombinase A; Provisional
Probab=93.96 E-value=0.29 Score=49.45 Aligned_cols=53 Identities=17% Similarity=0.182 Sum_probs=38.7
Q ss_pred HHHHHHHHHh-CCC--CcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHH
Q 010184 30 QEKSLSKMFG-NGR--ARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD 82 (516)
Q Consensus 30 Q~~al~~~~~-~~~--~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~ 82 (516)
=..+|..++. +|- ++-..|.+|+|+|||..++.++. ..++++++|-.-..+-.
T Consensus 44 Gi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 44 GSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 3456788888 542 34556889999999999987763 34678999887776444
No 358
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.95 E-value=0.77 Score=47.50 Aligned_cols=109 Identities=18% Similarity=0.140 Sum_probs=57.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc----CCCEEEEE-eC-hhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA-TN-AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~-P~-~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV 118 (516)
..++++|+|+|||.++..++... +.++.++. .+ +. ...| ++..|....+.. +.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~-aA~e--QLk~yAe~lgvp-----------------~~- 283 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI-AAIE--QLKRYADTMGMP-----------------FY- 283 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh-hHHH--HHHHHHHhcCCC-----------------ee-
Confidence 35688999999999988877432 34454444 22 22 2223 444443221110 11
Q ss_pred EchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhc----ccceEEEEeccCCCCc
Q 010184 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLT----KSHCKLGLTATLVRED 185 (516)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~----~~~~~l~LTATp~~~~ 185 (516)
+...+ ......+....+++||+|=+-+.... .+.+++... +....|.|+||--..+
T Consensus 284 -~~~~~----------~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~ 348 (432)
T PRK12724 284 -PVKDI----------KKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH 348 (432)
T ss_pred -ehHHH----------HHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH
Confidence 11111 12233443467899999977665422 334444332 2246788899986433
No 359
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.93 E-value=0.3 Score=51.06 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
-++..+|++|+|+|||+.|-+.+-..+-|+...+
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 4678899999999999999999988888887765
No 360
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.85 E-value=0.54 Score=43.00 Aligned_cols=34 Identities=21% Similarity=0.080 Sum_probs=26.3
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
-++.+||.||||..-+..+.. .+.++++..|...
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 478899999999877766643 4678999988643
No 361
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.85 E-value=0.061 Score=52.58 Aligned_cols=32 Identities=19% Similarity=0.287 Sum_probs=27.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
+.++.+|||||||+.|-+++..+.-|+-|-=-
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADA 130 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADA 130 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeeccc
Confidence 67899999999999999999999988766543
No 362
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=93.82 E-value=0.27 Score=46.91 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=33.1
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeCh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (516)
.+++.+++++ .+.-..|.+|.|+|||..+..++... ..+++++....
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3566777654 22455788999999999998876442 25788888544
No 363
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.81 E-value=0.42 Score=49.57 Aligned_cols=126 Identities=8% Similarity=0.062 Sum_probs=69.2
Q ss_pred ccEEEecCCCcHHHHHHHHH----Hh--cCCCEEEEEeChh-hHHHHHHHHHHhhCCCCCcEEEEeCCcc--c-cccC-C
Q 010184 45 SGIIVLPCGAGKSLVGVSAA----CR--IKKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQICRFTSDSK--E-RFRG-N 113 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i----~~--~~~~~Lvl~P~~~-L~~Qw~~e~~~~~~~~~~~v~~~~~~~~--~-~~~~-~ 113 (516)
-.++.+..|||||.+++..+ .. .+.+++++-|+.. |......++......-+.. ..+..... . .+.+ .
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~-~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN-YEFKKSKSSMEIKILNTG 81 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh-hheeecCCccEEEecCCC
Confidence 45788999999998776433 23 3467888888765 5555555665432211111 01111100 0 0111 2
Q ss_pred CcEEEEchhhhhccCCCChhHHHHHHHHcc-CCccEEEEccCccCCchhHHHHHhhccc---ceEEEEeccCCCC
Q 010184 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVISLTKS---HCKLGLTATLVRE 184 (516)
Q Consensus 114 ~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~~~~~~~l~~~~~---~~~l~LTATp~~~ 184 (516)
..|++..- + ... +.+.. ..++++.+|||..++...|..++..+.. ...+.+|.||...
T Consensus 82 ~~i~f~g~--------~-d~~----~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 82 KKFIFKGL--------N-DKP----NKLKSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred eEEEeecc--------c-CCh----hHhhCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 22333221 0 001 12222 3368999999999988888887776642 2348999999753
No 364
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.81 E-value=0.61 Score=46.93 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++|||....+.+... .-++..++.+|.|.|||..+..++..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 578998888887653 234467799999999999999887654
No 365
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.79 E-value=0.52 Score=51.08 Aligned_cols=127 Identities=13% Similarity=0.171 Sum_probs=77.3
Q ss_pred CCcccEEEecCCCcHHHHHHHHH----H-hcCCCEEEEEeChhhHHHHHHHHHHhhC--CCCCcEEEEeCCcc-cccc-C
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAA----C-RIKKSCLCLATNAVSVDQWAFQFKLWST--IQDDQICRFTSDSK-ERFR-G 112 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i----~-~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~--~~~~~v~~~~~~~~-~~~~-~ 112 (516)
+.+..++.-|=-.|||......+ . ..+..++|++|.+.......+++...+. .++..+....|+.- -.+. +
T Consensus 253 kqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~nG 332 (738)
T PHA03368 253 RQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGETISFSFPDG 332 (738)
T ss_pred hccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCcEEEEEecCC
Confidence 34578999999999997544322 1 2467999999999878877777665321 12233433333211 0112 2
Q ss_pred C-CcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc--cceEEEEeccCC
Q 010184 113 N-AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK--SHCKLGLTATLV 182 (516)
Q Consensus 113 ~-~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~--~~~~l~LTATp~ 182 (516)
. ..|.+.+- .+ -..++...++++|+|||+.++...+..++-.+. ....|.+|.|-.
T Consensus 333 ~kstI~FaSa---rn-----------tNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 333 SRSTIVFASS---HN-----------TNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred CccEEEEEec---cC-----------CCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCC
Confidence 1 23433311 00 122445789999999999999998888775542 345677776643
No 366
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.75 E-value=0.25 Score=52.60 Aligned_cols=133 Identities=17% Similarity=0.150 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHhC----C--CCcccEEEecCCCcHHHHHHHHHH--h-----cCCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 28 PYQEKSLSKMFGN----G--RARSGIIVLPCGAGKSLVGVSAAC--R-----IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 28 ~yQ~~al~~~~~~----~--~~~~~il~~~tG~GKTl~~i~~i~--~-----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
|+|.-.+..+++- + +.+.+++..|=|-|||..+..++. . .+..++++++++.-+....+.+......
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 7899999988842 1 235678889999999987655431 1 1246899999998888888877776543
Q ss_pred CCCcEEEEeCCccccccCCCcEEEEc-hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHHHHhhc
Q 010184 95 QDDQICRFTSDSKERFRGNAGVVVTT-YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT 169 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~IvV~T-~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~~ 169 (516)
.+..-..+...... .....|.... -+.+... .+. -+........++|+||+|..+.. .+..+...+
T Consensus 81 ~~~l~~~~~~~~~~--~~~~~i~~~~~~s~~~~~-s~~------~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~ 148 (477)
T PF03354_consen 81 SPELRKRKKPKIIK--SNKKEIEFPKTGSFFKAL-SSD------ADSLDGLNPSLAIFDELHAHKDDELYDALESGM 148 (477)
T ss_pred Chhhccchhhhhhh--hhceEEEEcCCCcEEEEE-ecC------CCCccCCCCceEEEeCCCCCCCHHHHHHHHhhh
Confidence 32211111000000 0011122211 1111111 000 11222456789999999999986 444443333
No 367
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=93.72 E-value=0.33 Score=45.93 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=34.0
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---C------CCEEEEEeChh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---K------KSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~------~~~Lvl~P~~~ 79 (516)
..++.++.++ .+.-..|.+|+|+|||..++.++... + .+++++.....
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCC
Confidence 3566777653 23456888999999999998876442 3 67888887654
No 368
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.71 E-value=0.14 Score=53.51 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=28.3
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.++..+|.+|+|+|||+++-+++.....+++-+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 34578999999999999999999887777665543
No 369
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.70 E-value=0.44 Score=50.28 Aligned_cols=99 Identities=18% Similarity=0.245 Sum_probs=60.8
Q ss_pred HHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
...++.+++++ .+.-.+|.+++|+|||..++.++... ++++|++..-- ...|+.....++ +.....
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rl-g~~~~~------- 150 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRL-GLPEPN------- 150 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHc-CCChHH-------
Confidence 44566777654 22345778999999999988876443 46899988653 467776655554 322211
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
+.+.... ....+...+...++++||||....+.
T Consensus 151 ----------l~~~~e~----------~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 151 ----------LYVLSET----------NWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred ----------eEEcCCC----------CHHHHHHHHHhcCCcEEEEecchhhc
Confidence 1121110 11334455555788999999998764
No 370
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.69 E-value=1.3 Score=46.30 Aligned_cols=103 Identities=8% Similarity=0.087 Sum_probs=66.4
Q ss_pred HHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCC-----ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC--cccc
Q 010184 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG--DNSI 328 (516)
Q Consensus 256 ~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~-----~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~--~~Gl 328 (516)
+..++.......-..+||+.++-..--.+-++++. ..|+.-.+...-.+.-+-|..+ ...+++-|.-+ =+-.
T Consensus 540 v~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER~hffrR~ 618 (698)
T KOG2340|consen 540 VDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTERAHFFRRY 618 (698)
T ss_pred HHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehhhhhhhhh
Confidence 34444433323446789999887777777777642 2344444555555666778887 78888877332 2557
Q ss_pred cccccCEEEEecCCCCCHHHH---HHHhhcccccC
Q 010184 329 DIPEANVIIQISSHAGSRRQE---AQRLGRILRAK 360 (516)
Q Consensus 329 Dlp~a~~vI~~~~~~~s~~~~---~Qr~GR~~R~g 360 (516)
++..+..||+|.+|. +|.-| +-+.+|+.-.|
T Consensus 619 ~ikGVk~vVfYqpP~-~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 619 HIKGVKNVVFYQPPN-NPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred eecceeeEEEecCCC-CcHHHHHHHhhhhhhhccC
Confidence 899999999997664 77655 55666665444
No 371
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=93.69 E-value=0.068 Score=49.55 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.3
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
.+|++|||+|||-.++.++...+.+++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 57899999999999999999998887765
No 372
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.60 E-value=0.11 Score=55.00 Aligned_cols=35 Identities=29% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.+++.++.+|+|+|||+.+-+++...+.+++.+-+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 34678999999999999999999888888877765
No 373
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.54 E-value=0.55 Score=49.54 Aligned_cols=44 Identities=14% Similarity=-0.020 Sum_probs=27.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
...+|.+++|+|||..+-+++..+ +.+++++.+ ..+.......+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 357799999999998776655432 345655443 44454444443
No 374
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.50 E-value=0.74 Score=41.61 Aligned_cols=47 Identities=17% Similarity=0.075 Sum_probs=39.7
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+|.+++|+|||..+..++...+.++++++....+-..|.+.+.++-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHHH
Confidence 36789999999999999988777899999999888777887776643
No 375
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.45 E-value=1.4 Score=41.67 Aligned_cols=72 Identities=18% Similarity=0.263 Sum_probs=43.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHh-----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
...|.+|+|+|||-..-+++.. .+.+++++.. .++.+++.....- +
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-----~~f~~~~~~~~~~----------~-------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-----EEFIREFADALRD----------G-------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-----HHHHHHHHHHHHT----------T--------------
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-----HHHHHHHHHHHHc----------c--------------
Confidence 4789999999999765444322 2345666542 2334444433210 0
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~ 160 (516)
. ...+.+.+ ...+++++|..|.+...
T Consensus 87 ~-------------~~~~~~~~--~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 87 E-------------IEEFKDRL--RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp S-------------HHHHHHHH--CTSSEEEEETGGGGTTH
T ss_pred c-------------chhhhhhh--hcCCEEEEecchhhcCc
Confidence 0 12334555 57899999999999875
No 376
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=93.39 E-value=0.24 Score=56.51 Aligned_cols=93 Identities=16% Similarity=0.215 Sum_probs=51.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~ 122 (516)
..++.+|+|+|||.++-+++..+. ...++...-++..+ .....++.+.++.-++ |+
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~--~~~~~~l~g~~~gyvg--------------------~~ 655 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE--AHTVSRLKGSPPGYVG--------------------YG 655 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh--hhhhccccCCCCCccc--------------------cc
Confidence 368899999999999988876663 33444444222111 1112222222211110 00
Q ss_pred hhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
. ...+...++...+++|+|||++.+....+..++..+
T Consensus 656 ~----------~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~l 692 (852)
T TIGR03345 656 E----------GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVF 692 (852)
T ss_pred c----------cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHh
Confidence 0 011223444577899999999987776665555544
No 377
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=93.32 E-value=0.18 Score=51.63 Aligned_cols=28 Identities=36% Similarity=0.528 Sum_probs=21.9
Q ss_pred CCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+.+..+.|++|+|+|||..+..++....
T Consensus 166 g~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 166 GKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 4445899999999999988777665543
No 378
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=93.31 E-value=0.11 Score=47.14 Aligned_cols=122 Identities=12% Similarity=0.069 Sum_probs=54.6
Q ss_pred EEEecCCCcHHHHHHHHHHhc-C---CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE-EEeCCcc-ccccCCCcEEEEc
Q 010184 47 IIVLPCGAGKSLVGVSAACRI-K---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC-RFTSDSK-ERFRGNAGVVVTT 120 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~-~---~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~-~~~~~~~-~~~~~~~~IvV~T 120 (516)
+|.++-|-|||-+.-.++..+ . .+++|.+|+..-+....+.+.+-+..-+.+.. ....... ........|-...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 578999999996554444332 2 47999999988555444333221110000000 0000000 0000123344445
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccCCCCcc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~~~~ 186 (516)
++.+... ....+++|||||=.++.+...+++. ...++.||.|-.-..+
T Consensus 81 Pd~l~~~---------------~~~~DlliVDEAAaIp~p~L~~ll~---~~~~vv~stTi~GYEG 128 (177)
T PF05127_consen 81 PDELLAE---------------KPQADLLIVDEAAAIPLPLLKQLLR---RFPRVVFSTTIHGYEG 128 (177)
T ss_dssp HHHHCCT-------------------SCEEECTGGGS-HHHHHHHHC---CSSEEEEEEEBSSTTB
T ss_pred CHHHHhC---------------cCCCCEEEEechhcCCHHHHHHHHh---hCCEEEEEeecccccc
Confidence 5444221 1246899999999999998887754 3457888888865443
No 379
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.30 E-value=0.2 Score=56.39 Aligned_cols=93 Identities=13% Similarity=0.189 Sum_probs=53.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l 124 (516)
..++++|+|+|||.++-.++..+..+++.+- .+...+ .....++.+.++..++ |+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d-~se~~~--~~~~~~lig~~~gyvg--------------------~~~- 541 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFD-MSEYME--KHTVSRLIGAPPGYVG--------------------FEQ- 541 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEe-Cchhhh--cccHHHHhcCCCCCcc--------------------cch-
Confidence 4689999999999999999888766554443 222111 0112222222111000 000
Q ss_pred hccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
.......++...+++|++||++.+....+..++..+.
T Consensus 542 ---------~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 542 ---------GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred ---------hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 0122334445678999999999998776666666553
No 380
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.26 E-value=0.17 Score=46.22 Aligned_cols=38 Identities=26% Similarity=0.283 Sum_probs=25.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD 82 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~ 82 (516)
.+.++.+|+|+|||..+.+++.. .+.+++++. ...|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~-~~~L~~ 88 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT-ASDLLD 88 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-HHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee-cCceec
Confidence 58899999999999998887633 356676654 334443
No 381
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.18 E-value=0.63 Score=44.61 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=25.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---------------cCCCEEEEEeC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---------------IKKSCLCLATN 77 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---------------~~~~~Lvl~P~ 77 (516)
-++|++|.|+|||..++.++.. ...++|+++--
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E 50 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAE 50 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECC
Confidence 5799999999999998877642 13578888843
No 382
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.08 E-value=1 Score=45.12 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=26.4
Q ss_pred HHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 33 al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+...+..++ ++..++.+|.|.||+..+..++..+
T Consensus 15 ~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~l 50 (314)
T PRK07399 15 LLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGL 50 (314)
T ss_pred HHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555554 5678999999999999999888665
No 383
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.07 E-value=0.74 Score=48.57 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=28.1
Q ss_pred HHHHHH---HHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
|..++. .++..++ ++..++.+|.|+|||.++..++..+.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 555544 4455444 34578999999999999999887664
No 384
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=93.05 E-value=0.47 Score=47.49 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=33.3
Q ss_pred HHHHHHHhCCC--CcccEEEecCCCcHHHHHHHHHH--h-------cCCCEEEEEeChh
Q 010184 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAAC--R-------IKKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~--~-------~~~~~Lvl~P~~~ 79 (516)
..+..++++|- +.-..|.+|.|+|||..++.++. . .+.++++|.....
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 34667777642 23446889999999999877653 2 2368999986654
No 385
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.04 E-value=0.24 Score=48.27 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=35.7
Q ss_pred CHHHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 27 RPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 27 r~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.|..++.++.++. .+ +..+|.+|+|+|||.++..++...+.+++.++-
T Consensus 4 t~~~~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~ 54 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDRPVMLING 54 (262)
T ss_pred CHHHHHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeC
Confidence 3455555554432 23 488999999999999999999888888888753
No 386
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.04 E-value=0.6 Score=49.14 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=23.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~ 75 (516)
...+|.+|+|+|||..+-+++..+ +.+++++.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 467899999999999887766543 23566554
No 387
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=93.03 E-value=0.4 Score=45.79 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=31.4
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHH
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~ 85 (516)
.++..++.+|+|+|||+++-+.+.+.. -|.|=+--++|+..+.
T Consensus 210 ppkgvllygppgtgktl~aravanrtd-acfirvigselvqkyv 252 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTD-ACFIRVIGSELVQKYV 252 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccC-ceEEeehhHHHHHHHh
Confidence 456788899999999999988876655 4455555667766444
No 388
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.92 E-value=0.75 Score=47.06 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=27.7
Q ss_pred HHHHHHH---HHHhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 29 YQEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 29 yQ~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.|.++.. .++..++ ++..++.+|.|.||+..+..++..+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3555544 4455554 4457899999999999999888554
No 389
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.90 E-value=1.2 Score=45.79 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 30 QEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 30 Q~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
..+.+...+.++. ++..++.+|.|+|||..+..++..+..
T Consensus 25 ~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 25 ITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3444555555543 346789999999999998888766543
No 390
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=92.87 E-value=1.1 Score=45.10 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+..++..++ ++..++.+|.|.|||..+..++..+
T Consensus 18 L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 18 LQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 344455554 3345899999999999998887654
No 391
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=92.86 E-value=0.19 Score=49.03 Aligned_cols=41 Identities=22% Similarity=0.347 Sum_probs=34.1
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHH
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Q 83 (516)
.+..+.|.+|.|.|||+++-+.+++++...|.++- ++|+.-
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~s-s~lv~k 205 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVS-SALVDK 205 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeH-hhhhhh
Confidence 45688999999999999999999999988887764 455553
No 392
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.81 E-value=1.4 Score=48.62 Aligned_cols=135 Identities=18% Similarity=0.197 Sum_probs=76.0
Q ss_pred CCHHHHHHHH---HHHhCCCCcccEEEecCCCcHHHHHH---HHHHhcC--CCEEEEEeChhhHHHHHHHHH----HhhC
Q 010184 26 PRPYQEKSLS---KMFGNGRARSGIIVLPCGAGKSLVGV---SAACRIK--KSCLCLATNAVSVDQWAFQFK----LWST 93 (516)
Q Consensus 26 Lr~yQ~~al~---~~~~~~~~~~~il~~~tG~GKTl~~i---~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~~----~~~~ 93 (516)
...-|.+++. .++..+ .+-.+|.++=|=|||-+.- .++.+.. .+++|.+|+.+-+ |..-+|. .+++
T Consensus 212 ~T~dQ~~~l~~~~~l~~~~-~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv-~~Lf~fa~~~l~~lg 289 (758)
T COG1444 212 LTEDQAEALEILERLLDAP-KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANV-QTLFEFAGKGLEFLG 289 (758)
T ss_pred cChhHHHHHHHHHHHHcCC-CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHH-HHHHHHHHHhHHHhC
Confidence 3445666655 444443 3467888999999996533 3444444 4999999999844 4444443 2223
Q ss_pred CCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccce
Q 010184 94 IQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHC 173 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~ 173 (516)
.....+.-..+.......+...|-..+|... . ..-+++|+|||=.++-+-..+++.. ..
T Consensus 290 ~~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a----------------~--~~~DllvVDEAAaIplplL~~l~~~---~~ 348 (758)
T COG1444 290 YKRKVAPDALGEIREVSGDGFRIEYVPPDDA----------------Q--EEADLLVVDEAAAIPLPLLHKLLRR---FP 348 (758)
T ss_pred CccccccccccceeeecCCceeEEeeCcchh----------------c--ccCCEEEEehhhcCChHHHHHHHhh---cC
Confidence 2211111111111111112233444444322 1 1267999999999999887776664 34
Q ss_pred EEEEeccCCC
Q 010184 174 KLGLTATLVR 183 (516)
Q Consensus 174 ~l~LTATp~~ 183 (516)
++.||-|-.-
T Consensus 349 rv~~sTTIhG 358 (758)
T COG1444 349 RVLFSTTIHG 358 (758)
T ss_pred ceEEEeeecc
Confidence 7888888654
No 393
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.76 E-value=0.77 Score=45.78 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=26.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQ 83 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Q 83 (516)
++.+|.+|+|+|||..+.+++..+ +.+++++.- ..++..
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~-~~l~~~ 198 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHF-PEFIRE 198 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEH-HHHHHH
Confidence 467889999999999888877544 456665543 234443
No 394
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.73 E-value=0.85 Score=48.25 Aligned_cols=148 Identities=14% Similarity=0.105 Sum_probs=80.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhC-----C--CCcccEEEecCCCcHHHHHHHHH-------HhcCCCEEEEEeChhhHHHHH
Q 010184 20 LKPHAQPRPYQEKSLSKMFGN-----G--RARSGIIVLPCGAGKSLVGVSAA-------CRIKKSCLCLATNAVSVDQWA 85 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~-----~--~~~~~il~~~tG~GKTl~~i~~i-------~~~~~~~Lvl~P~~~L~~Qw~ 85 (516)
-...+.|-|||.-.+..+++- + +.+.++|..|-|=|||..+..+. ...+..+.|++|+..-+.+-.
T Consensus 56 ~~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 56 PGFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhh
Confidence 344578999999999998842 1 23467899999999997665433 223467999999877565555
Q ss_pred HHHHHhh-CCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hH
Q 010184 86 FQFKLWS-TIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MF 162 (516)
Q Consensus 86 ~e~~~~~-~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~ 162 (516)
...+.-. ..+ .+.....- ....+.|+-..+-+.....+.+ -+.....+..+.|+||.|....+ .+
T Consensus 136 ~~ar~mv~~~~--~l~~~~~~------q~~s~~i~~~~~~s~ik~~aa~----~~~~Dg~~~~~~I~DEih~f~~~~~~~ 203 (546)
T COG4626 136 NPARDMVKRDD--DLRDLCNV------QTHSRTITHRKTDSTIKAVAAD----PNTVDGLNSVGAIIDELHLFGKQEDMY 203 (546)
T ss_pred HHHHHHHHhCc--chhhhhcc------ccceeEEEecccceeeeeeccC----CCcccCCCcceEEEehhhhhcCHHHHH
Confidence 5544321 111 00000000 0111112111110000000000 11222456789999999999985 55
Q ss_pred HHHHhhccc---ceEEEEec
Q 010184 163 RKVISLTKS---HCKLGLTA 179 (516)
Q Consensus 163 ~~~l~~~~~---~~~l~LTA 179 (516)
..+...+.+ +..++.|=
T Consensus 204 ~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 204 SEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred HHHHhhhccCcCceEEEEec
Confidence 555555543 34555543
No 395
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.71 E-value=0.56 Score=43.07 Aligned_cols=127 Identities=13% Similarity=0.016 Sum_probs=66.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
+..++..+.|-|||-.++..+.+ .+.+++++==.+.-.. ..|...+..++ .+..+..+..-.+.... .
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~--~GE~~~l~~l~--~v~~~~~g~~~~~~~~~-----~ 93 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS--TGERNLLEFGG--GVEFHVMGTGFTWETQD-----R 93 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc--cCHHHHHhcCC--CcEEEECCCCCcccCCC-----c
Confidence 37788899999999999987644 3678888865553211 12322221122 22222222110010000 0
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hHHHHHhhcccceEEEEeccCC
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~~~l~~~~~~~~l~LTATp~ 182 (516)
.+..... ..........+...+|++||+||.=...+- ....++..-+...-|.|||--.
T Consensus 94 ~e~~~~~---~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 94 ERDIAAA---REGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHH---HHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 0000000 001233345566789999999998665542 3344455444455788998754
No 396
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.70 E-value=1.2 Score=47.38 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=22.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~ 75 (516)
+..+|++|+|+|||.++..++... ++++.++.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 467788999999998876655321 24565554
No 397
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.68 E-value=1.9 Score=42.17 Aligned_cols=111 Identities=16% Similarity=0.169 Sum_probs=61.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe-C--hhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P-~--~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (516)
....+++++|+|||..+..++... +.++.++.. . ...+.||....... + ..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~-~--------------------~~~~ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI-G--------------------FEVI 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhc-C--------------------ceEE
Confidence 477889999999998777655443 345655553 1 24577776433321 1 1122
Q ss_pred E-EchhhhhccCCCChhHHHHHHHHcc-CCccEEEEccCccCCc--hhHH---HHHhhccc-ceEEEEeccCCCCc
Q 010184 118 V-TTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA--HMFR---KVISLTKS-HCKLGLTATLVRED 185 (516)
Q Consensus 118 V-~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~~vIlDEaH~~~~--~~~~---~~l~~~~~-~~~l~LTATp~~~~ 185 (516)
. .+++.+ ...+..+.. ..+++||+|-+=+... .... +++..... ...|.|+||-..++
T Consensus 135 ~~~~~~~l----------~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 135 AVRDEAAM----------TRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ecCCHHHH----------HHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 2 233333 223344432 4689999999977653 2333 33333222 34577888875433
No 398
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=92.68 E-value=0.5 Score=49.72 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=24.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (516)
...+|.+|+|+|||-.+-+++..+ +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 357899999999998877766443 466766653
No 399
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.67 E-value=0.59 Score=50.67 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=26.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~ 86 (516)
..+|.+++|+|||..+.+++... +.+++++. ...++.++..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHH
Confidence 47889999999998877666443 34565554 3444544433
No 400
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.64 E-value=0.22 Score=49.95 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L 80 (516)
..+.+.|.+.+..++..+ .+.+|+++||+|||...-+++..+ ..+++++=.+.+|
T Consensus 127 g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 446778888888877765 488999999999998887766554 2455555555553
No 401
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.63 E-value=0.61 Score=41.62 Aligned_cols=125 Identities=14% Similarity=0.050 Sum_probs=62.0
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchh
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~ 122 (516)
..+..++|.|||-.++..+.+ .+.+++++==.+.-. ...|..-+..++. +..+..+....+.... ..+
T Consensus 5 i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~--~~gE~~~l~~l~~--v~~~~~g~~~~~~~~~-----~~~ 75 (159)
T cd00561 5 IQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW--KYGELKALERLPN--IEIHRMGRGFFWTTEN-----DEE 75 (159)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC--ccCHHHHHHhCCC--cEEEECCCCCccCCCC-----hHH
Confidence 455678899999999876633 467888854333211 1223222222332 3333322211111000 001
Q ss_pred hhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc------hhHHHHHhhcccceEEEEeccCC
Q 010184 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~------~~~~~~l~~~~~~~~l~LTATp~ 182 (516)
..... + .........+....+++||+||.=...+ .....+++.-+...-+.|||--.
T Consensus 76 ~~~~a-~--~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 76 DIAAA-A--EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHH-H--HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 11000 0 0112223344567899999999876532 24444555545555688888654
No 402
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.51 E-value=0.38 Score=54.88 Aligned_cols=93 Identities=16% Similarity=0.262 Sum_probs=50.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~ 122 (516)
..++.+|+|+|||.++-.++..+. ...++-+..+..... ..+.++.+.++. .| -|+
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~--~~~~~l~g~~~g-------------------yv-g~~ 598 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEK--HTVSKLIGSPPG-------------------YV-GYN 598 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhcccc--ccHHHhcCCCCc-------------------cc-CcC
Confidence 468999999999999998887653 223333333321110 111222111110 00 010
Q ss_pred hhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
. ...+...++...+++|++||++.+....+..++..+
T Consensus 599 ~----------~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~l 635 (821)
T CHL00095 599 E----------GGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQIL 635 (821)
T ss_pred c----------cchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHh
Confidence 0 011234444567789999999998877666555544
No 403
>PRK06620 hypothetical protein; Validated
Probab=92.40 E-value=0.65 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=18.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+..+|.+|+|+|||-.+-++....
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 468999999999998887654443
No 404
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=92.32 E-value=0.5 Score=53.94 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=29.3
Q ss_pred HHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 30 Q~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|.+-++.++. .+...+.+|++|+|+|||.++-.++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 6666776654 4445689999999999999988877665
No 405
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.26 E-value=1.8 Score=44.24 Aligned_cols=44 Identities=18% Similarity=0.159 Sum_probs=28.8
Q ss_pred CcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEe-C-h-hhHHHHHH
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT-N-A-VSVDQWAF 86 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P-~-~-~L~~Qw~~ 86 (516)
++..++++|+|+|||.++..++.. .++++.+++- + + .-++||..
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~ 255 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQG 255 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHH
Confidence 346678899999999888776643 3456666653 2 2 23666655
No 406
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=92.25 E-value=0.17 Score=45.97 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCCcEEEEchhhhhccCCCChhHHHHHHHHc--cCCccEEEEccCccCCch
Q 010184 112 GNAGVVVTTYNMVAFGGKRSEESEKIIEEIR--NREWGLLLMDEVHVVPAH 160 (516)
Q Consensus 112 ~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~--~~~~~~vIlDEaH~~~~~ 160 (516)
..++|+|++|..+... .....+. ..+-.+|||||||.+...
T Consensus 118 ~~adivi~~y~yl~~~--------~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 118 KNADIVICNYNYLFDP--------SIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GG-SEEEEETHHHHSH--------HHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred ccCCEEEeCHHHHhhH--------HHHhhhccccccCcEEEEecccchHHH
Confidence 4588999999998763 2223331 234468999999998753
No 407
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.22 E-value=0.41 Score=50.89 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=31.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---------cCCCEEEEEeChhhHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---------~~~~~Lvl~P~~~L~~Qw~~ 86 (516)
.-.|+.+..|||||.+|+.=++. ..++|||+.|.+...+-..+
T Consensus 227 ~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~ 278 (747)
T COG3973 227 KILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISR 278 (747)
T ss_pred CeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHH
Confidence 35677899999999999863321 13679999999986654333
No 408
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.21 E-value=0.46 Score=57.19 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=35.2
Q ss_pred CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHH
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw 84 (516)
..+++.++.||+|+|||+.|=++|...+-|++-|..+. ++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~-fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK-FLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHH-Hhhcc
Confidence 45568899999999999999999999999998877644 45544
No 409
>PRK04132 replication factor C small subunit; Provisional
Probab=92.18 E-value=0.52 Score=53.17 Aligned_cols=90 Identities=12% Similarity=0.231 Sum_probs=58.2
Q ss_pred EecCCCcHHHHHHHHHHhc-----CCCEEEEEeChh-hHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchh
Q 010184 49 VLPCGAGKSLVGVSAACRI-----KKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (516)
Q Consensus 49 ~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~-L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~ 122 (516)
.+|.+.|||-++.+++..+ +..++-+-++.. =+++.++.+..+....+
T Consensus 572 ~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-------------------------- 625 (846)
T PRK04132 572 NLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP-------------------------- 625 (846)
T ss_pred CCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC--------------------------
Confidence 4699999999999998776 346777777763 24555544444321100
Q ss_pred hhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH---HHHhhcccceEEEEeccCC
Q 010184 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR---KVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~---~~l~~~~~~~~l~LTATp~ 182 (516)
+...++.++|+||||.+...... +.+...+...++.|++++.
T Consensus 626 ------------------~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 626 ------------------IGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred ------------------cCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 00124569999999999865444 4444444667788887764
No 410
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.16 E-value=0.59 Score=46.83 Aligned_cols=48 Identities=13% Similarity=0.216 Sum_probs=37.7
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.++.++.+|+|+|||+.|-+.+.+.+.+++=|.-+ .|..-|..+-.+.
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s-~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVS-NLTSKWFGEAQKL 174 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcceeecc-ccchhhHHHHHHH
Confidence 45778889999999999999999988777666543 4677788766654
No 411
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.15 E-value=0.37 Score=46.88 Aligned_cols=56 Identities=21% Similarity=0.342 Sum_probs=40.8
Q ss_pred HHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHH
Q 010184 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
+..++.++ ..+..+|.+++|+|||+.++.++.. .+.++++|+... ...+..+.+..
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e-~~~~l~~~~~~ 72 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE-SPEELLENARS 72 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC-CHHHHHHHHHH
Confidence 55666653 3356788899999999999988744 467899998654 46666666665
No 412
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.14 E-value=1.7 Score=44.14 Aligned_cols=109 Identities=17% Similarity=0.070 Sum_probs=49.1
Q ss_pred EEEecCCCcHHHHHHHHH-Hh---cC-CCEEEEEeChhhHHHHH----HHHHHhhCCCCCcEEEE-eCCccccccCCCcE
Q 010184 47 IIVLPCGAGKSLVGVSAA-CR---IK-KSCLCLATNAVSVDQWA----FQFKLWSTIQDDQICRF-TSDSKERFRGNAGV 116 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i-~~---~~-~~~Lvl~P~~~L~~Qw~----~e~~~~~~~~~~~v~~~-~~~~~~~~~~~~~I 116 (516)
+|.++.|+|||.+....+ .. .. .+.++++|+..-+.... ..+..+..- ...+..- .....-.+.+...|
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nG~~i 79 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKIILPNGSRI 79 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEEETTS-EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEEecCceEE
Confidence 578899999998765433 22 23 25666667765444421 122222111 1122222 11111112333445
Q ss_pred EEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh
Q 010184 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (516)
Q Consensus 117 vV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (516)
.+.+.+.- .....+....++++++||+-..+...+...+.
T Consensus 80 ~~~~~~~~-----------~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~ 119 (384)
T PF03237_consen 80 QFRGADSP-----------DSGDNIRGFEYDLIIIDEAAKVPDDAFSELIR 119 (384)
T ss_dssp EEES----------------SHHHHHTS--SEEEEESGGGSTTHHHHHHHH
T ss_pred EEeccccc-----------cccccccccccceeeeeecccCchHHHHHHHH
Confidence 55554311 11345556888999999998888776555543
No 413
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=92.09 E-value=0.46 Score=47.49 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
.+.+.+.+--..++-.++..+ ++.+|.+|+|+|||..+-.++..++.+++-|.-+.
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~ 99 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDS 99 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecC
Confidence 345667766666666666554 48999999999999999999999998877665433
No 414
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.06 E-value=2 Score=42.94 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCC-cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+...+.+..++..++. +..++.+|-|.|||..+..++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 3445556666666543 3448999999999999999887653
No 415
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.04 E-value=0.76 Score=51.82 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=26.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
++..+|.+|+|+|||..+-+++...+.+++.+.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 357789999999999998888877776665554
No 416
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.03 E-value=0.3 Score=48.57 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=36.4
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChh
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAV 79 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~ 79 (516)
+.+.|.+.+..+...+ ++.+|+++||+|||...-+++..+ ..+++++=...+
T Consensus 117 ~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 117 MTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred CCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 4445666677666654 489999999999999887777654 345666555544
No 417
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.99 E-value=1.2 Score=43.70 Aligned_cols=68 Identities=21% Similarity=0.144 Sum_probs=39.9
Q ss_pred CHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHh--cCC---CEEEEE-eChhhHHHHHHHHHHhhCC
Q 010184 27 RPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR--IKK---SCLCLA-TNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 27 r~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~--~~~---~~Lvl~-P~~~L~~Qw~~e~~~~~~~ 94 (516)
|+...+.+...+.. +..+...|.++.|.|||..|..++.. ... .++++. .......+....+...++.
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 45566666666655 34456788899999999999998855 332 234433 2222224444455554443
No 418
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=91.88 E-value=1.3 Score=45.24 Aligned_cols=101 Identities=20% Similarity=0.286 Sum_probs=69.6
Q ss_pred HHHHHHHHHhCCC-Cccc-EEEecCCCcHHHHHHHHHHhc--CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 30 QEKSLSKMFGNGR-ARSG-IIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 30 Q~~al~~~~~~~~-~~~~-il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
...-++..++++- +++. +|.+++|.|||..-+.+++.+ .+++|+|+-- +...||+-...+. +++.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGE-ES~~QiklRA~RL-~~~~--------- 146 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGE-ESLQQIKLRADRL-GLPT--------- 146 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCC-cCHHHHHHHHHHh-CCCc---------
Confidence 3445666777641 2244 555899999998877766554 3489999865 4599999988886 3332
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (516)
..+.+.....+ +.++..+...+++++|+|=.+.+-.
T Consensus 147 --------~~l~l~aEt~~----------e~I~~~l~~~~p~lvVIDSIQT~~s 182 (456)
T COG1066 147 --------NNLYLLAETNL----------EDIIAELEQEKPDLVVIDSIQTLYS 182 (456)
T ss_pred --------cceEEehhcCH----------HHHHHHHHhcCCCEEEEeccceeec
Confidence 23555444333 5567777778999999999998764
No 419
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.82 E-value=0.51 Score=44.66 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=41.1
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.++.++.++ .+...+|.+++|+|||..++.++. ..+.+++++.... -..+..+.+..+
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHc
Confidence 567777654 234567889999999998887763 3367899988655 477776666554
No 420
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.74 E-value=0.34 Score=51.37 Aligned_cols=123 Identities=20% Similarity=0.232 Sum_probs=64.6
Q ss_pred HHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcCCCE-EEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc
Q 010184 32 KSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSC-LCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER 109 (516)
Q Consensus 32 ~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~~-Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~ 109 (516)
++|...+..++ ++..++.+|=|.|||-++=.++..+.... -..-|... +. ..+++..- ...+|..+.+....
T Consensus 26 ~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~-C~-~Ck~I~~g---~~~DviEiDaASn~- 99 (515)
T COG2812 26 KTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGK-CI-SCKEINEG---SLIDVIEIDAASNT- 99 (515)
T ss_pred HHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchh-hh-hhHhhhcC---Ccccchhhhhhhcc-
Confidence 44555555553 44668889999999999888776654322 11112211 11 01122210 11122222222111
Q ss_pred ccCCCcEEEEchhhhhccCCCChhHHHHHHHHc----cCCccEEEEccCccCCchhHHHHHhhcc--cceEEEEecc
Q 010184 110 FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR----NREWGLLLMDEVHVVPAHMFRKVISLTK--SHCKLGLTAT 180 (516)
Q Consensus 110 ~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~----~~~~~~vIlDEaH~~~~~~~~~~l~~~~--~~~~l~LTAT 180 (516)
.| .+...+.+... ..++.+.||||+|.+....|..+++.+- ..+++.+=||
T Consensus 100 -------gV-------------ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlAT 156 (515)
T COG2812 100 -------GV-------------DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILAT 156 (515)
T ss_pred -------Ch-------------HHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEec
Confidence 01 11122223221 2567899999999999999998888773 3344444455
No 421
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=91.72 E-value=1.1 Score=45.09 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=32.8
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~ 79 (516)
..+..++++| .+.-..|++|+|+|||..++.++... +.++++|..-..
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 3455666654 22345688999999999998887542 247888886553
No 422
>PRK10865 protein disaggregation chaperone; Provisional
Probab=91.63 E-value=0.53 Score=53.79 Aligned_cols=93 Identities=15% Similarity=0.216 Sum_probs=51.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~ 122 (516)
..++.+|+|+|||.+|-.++.... ...++.+........ ....++++.++.-+ |... -
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~--~~~~~LiG~~pgy~----g~~~-------------~- 659 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK--HSVSRLVGAPPGYV----GYEE-------------G- 659 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh--hhHHHHhCCCCccc----ccch-------------h-
Confidence 568999999999999988876542 223344444443321 12233333322111 0000 0
Q ss_pred hhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
......+.....+++++||++.+....+..++..+
T Consensus 660 ------------g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 660 ------------GYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred ------------HHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 01112233356689999999998877666666554
No 423
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=91.61 E-value=0.31 Score=52.92 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..|-..|..|...++... -.||.+|+|+|||++++.++..+ .-|+||+|-|.-.++|....+..
T Consensus 377 ~ildsSq~~A~qs~ltye---lsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKLTYE---LSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHhhhh---hheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 456778999999988765 67999999999999998877443 35899999998888887776654
No 424
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=91.54 E-value=0.89 Score=46.03 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=32.7
Q ss_pred HHHHHHHhCCC--CcccEEEecCCCcHHHHHHHHHHh--c-------CCCEEEEEeChh
Q 010184 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~~--~-------~~~~Lvl~P~~~ 79 (516)
.++..++++|- +.-..|.+|.|+|||..++.++.. + ..++++|.....
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 34666777642 234468899999999988876532 1 258999987543
No 425
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=91.45 E-value=1.1 Score=44.07 Aligned_cols=137 Identities=9% Similarity=0.091 Sum_probs=71.1
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-----------c--CCCEEEEEeChhhHHHHHHHH---HHhhC
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----------I--KKSCLCLATNAVSVDQWAFQF---KLWST 93 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-----------~--~~~~Lvl~P~~~L~~Qw~~e~---~~~~~ 93 (516)
|-+.+..++..+. ..+|.++-|+|||+..+.+.-. . .+.+|+|.---. -+.....| ..-.+
T Consensus 78 ~P~lId~~fr~g~--~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~-re~~L~Rl~~v~a~mg 154 (402)
T COG3598 78 SPQLIDEFFRKGY--VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELY-REDILERLEPVRARMG 154 (402)
T ss_pred ChhhhhHHhhcCe--eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccC-hHHHHHHHHHHHHHcC
Confidence 6666777777662 5677799999999877653311 1 156888763322 22233333 33346
Q ss_pred CCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC------ch-------
Q 010184 94 IQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP------AH------- 160 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~------~~------- 160 (516)
+++.+|..+.-..-+....+.+++. + .| ..++...+...++++||+|-.=.+. +.
T Consensus 155 LsPadvrn~dltd~~Gaa~~~d~l~--p-kl---------~rRfek~~~Q~rp~~vViDp~v~f~~G~s~s~vqv~~fi~ 222 (402)
T COG3598 155 LSPADVRNMDLTDVSGAADESDVLS--P-KL---------YRRFEKILEQKRPDFVVIDPFVAFYEGKSISDVQVKEFIK 222 (402)
T ss_pred CChHhhhheeccccccCCCcccccc--H-HH---------HHHHHHHHHHhCCCeEEEcchhhhcCCccchhHHHHHHHH
Confidence 6665554333211100011122222 2 22 1334445556788999999765443 11
Q ss_pred hHHHHHhhcccceEEEEeccCC
Q 010184 161 MFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 161 ~~~~~l~~~~~~~~l~LTATp~ 182 (516)
.++++...+.+ .+|.++-|-.
T Consensus 223 ~~rkla~~l~c-aIiy~hHtsk 243 (402)
T COG3598 223 KTRKLARNLEC-AIIYIHHTSK 243 (402)
T ss_pred HHHHHHHhcCC-eEEEEecccc
Confidence 34444444433 3566666643
No 426
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.36 E-value=0.4 Score=48.11 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L 80 (516)
.+.+.|.+.+......+ ++.+|+++||+|||...-+++... ..++++|-.+.++
T Consensus 132 ~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 35567778887766654 489999999999997766666442 2456666665554
No 427
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.34 E-value=0.33 Score=43.93 Aligned_cols=47 Identities=19% Similarity=0.064 Sum_probs=39.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..+|.+++|+|||..+..++...+.+++++++....-.+|.+.+..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHH
Confidence 46788999999999999998888888999998877777788777665
No 428
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=91.26 E-value=2.4 Score=44.14 Aligned_cols=47 Identities=13% Similarity=-0.117 Sum_probs=29.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe--ChhhHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT--NAVSVDQWAFQFKL 90 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P--~~~L~~Qw~~e~~~ 90 (516)
.-.++++++|+|||.++..++..+ ++++++++. .+.-+.+|.+.+..
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~ 152 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNAT 152 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhh
Confidence 345788999999998887766443 456676653 23334444444443
No 429
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.22 E-value=1 Score=45.53 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=25.5
Q ss_pred HHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 30 Q~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|.++...++- .....+.+|.++.|+|||..+-++....
T Consensus 9 q~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 9 QDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 6666555432 1223478899999999999887766443
No 430
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=91.13 E-value=0.79 Score=41.39 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=52.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
...+|.+++|+||+++|-++-... .+|++.|-.. .+-.++.+ ..+|+.... .+++.... .
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~-~~~~~~~e--~~LFG~~~~---~~~~~~~~-----------~ 85 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA-ALPEELLE--SELFGHEKG---AFTGARSD-----------K 85 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT-TS-HHHHH--HHHHEBCSS---SSTTTSSE-----------B
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh-hhhcchhh--hhhhccccc---cccccccc-----------c
Confidence 589999999999999987765443 2566665544 44444322 123332110 11111111 1
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhccc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~ 171 (516)
.+. |....-|.+++||++.++...-.+++..+..
T Consensus 86 ~G~-----------------l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~ 119 (168)
T PF00158_consen 86 KGL-----------------LEQANGGTLFLDEIEDLPPELQAKLLRVLEE 119 (168)
T ss_dssp EHH-----------------HHHTTTSEEEEETGGGS-HHHHHHHHHHHHH
T ss_pred CCc-----------------eeeccceEEeecchhhhHHHHHHHHHHHHhh
Confidence 121 2235568999999999998877777776653
No 431
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.08 E-value=1.4 Score=47.29 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---c-CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 28 PYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 28 ~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~-~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
|.-..++..++.++ ++...+|.+++|+|||..++.++.. . +.+++++.-.- -.+|..+.+..+
T Consensus 14 ~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee-~~~~i~~~~~~~ 82 (509)
T PRK09302 14 PTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEE-SPEDIIRNVASF 82 (509)
T ss_pred cCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccC-CHHHHHHHHHHc
Confidence 34456788888654 2345678899999999999876632 2 56899988554 477777777664
No 432
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.08 E-value=0.53 Score=45.43 Aligned_cols=37 Identities=30% Similarity=0.368 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++++.++.-+++..++|.+|.|+|||..+-.++....
T Consensus 5 ~~id~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~ 41 (249)
T cd01128 5 RVVDLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT 41 (249)
T ss_pred hheeeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 4555555444556899999999999987766665543
No 433
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=91.06 E-value=0.49 Score=45.94 Aligned_cols=59 Identities=22% Similarity=0.261 Sum_probs=37.6
Q ss_pred HHHHHHHhCCCCc--ccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 32 KSLSKMFGNGRAR--SGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 32 ~al~~~~~~~~~~--~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
+++..++++|-.. -.=|++|.|+|||-.++.++... .+++++|......-.+-..++.+
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 3566777654222 23467999999999888766432 35799998777655544444444
No 434
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.05 E-value=0.31 Score=52.36 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=34.7
Q ss_pred cccCCCCCCCCHHHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHH
Q 010184 17 NMELKPHAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 17 ~~~l~~~~~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~ 62 (516)
.+.+.+.++|++.|++-++.++. .| +-||+-.|||+|||+.-+.
T Consensus 7 ~~~F~fPy~PYdIQ~~lM~elyrvLe~G--kIgIfESPTGTGKSLSLiC 53 (821)
T KOG1133|consen 7 AIEFPFPYTPYDIQEDLMRELYRVLEEG--KIGIFESPTGTGKSLSLIC 53 (821)
T ss_pred ccccCCCCCchhHHHHHHHHHHHHHhcC--CeeeeeCCCCCCchHHHHH
Confidence 34566788999999998887643 44 4899999999999986554
No 435
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.91 E-value=0.59 Score=49.88 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=45.1
Q ss_pred HHHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---c-CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~-~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..++..++.++ +++..+|.+|+|+|||..++.++.+ . +.++|+|+-. +-..++.+....+
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~ 72 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSF 72 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHc
Confidence 35677888765 3457788899999999999987643 2 5799999865 4577777777765
No 436
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.90 E-value=0.38 Score=50.29 Aligned_cols=44 Identities=18% Similarity=0.290 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
-+.|+|.+.+..+++... +-.++.+|||||||.+-.+++..+..
T Consensus 241 g~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 241 GMSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 358889999998887642 24456699999999998888877653
No 437
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.54 Score=48.51 Aligned_cols=47 Identities=13% Similarity=0.229 Sum_probs=38.0
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHH
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
.++.++.+|.|.|||+.+-+++.+.+-.+.-|.|+. |..-|..+-.+
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass-LtsK~~Ge~eK 232 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS-LTSKYVGESEK 232 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceEeeccHHH-hhhhccChHHH
Confidence 457789999999999999999999998888888865 67766554433
No 438
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=90.82 E-value=2.2 Score=37.01 Aligned_cols=116 Identities=16% Similarity=0.172 Sum_probs=64.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----CCce-EecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccc
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKPM-IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----~~~~-i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~Gl 328 (516)
..+-.|++..- ..|.+++|+|++...++.+-+.| .-.+ =|+-.... .. ..-.|+++++... -
T Consensus 16 ~~~c~L~~k~~-~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~-~~~PV~i~~~~~~--~ 82 (137)
T PF04364_consen 16 RFACRLAEKAY-RQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PA-ARQPVLITWDQEA--N 82 (137)
T ss_dssp HHHHHHHHHHH-HTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------ST-T--SEEEE-TTS----
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CC-CCCeEEEecCccc--C
Confidence 45556665554 67899999999999999999999 1222 24332211 01 1346887775322 2
Q ss_pred cccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHcCCceE
Q 010184 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFK 407 (516)
Q Consensus 329 Dlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~ 407 (516)
..+.++++|+.+... + .+. +|- ..++.+|+.+......++.|-+++.+.||..+
T Consensus 83 ~~~~~~vLinL~~~~--p-~~~---~~f-------------------~rvieiv~~~~~~~~~aR~r~r~Yk~~G~~l~ 136 (137)
T PF04364_consen 83 PNNHADVLINLSGEV--P-PFF---SRF-------------------ERVIEIVDQDDEAKQAARERYRFYKDRGYELQ 136 (137)
T ss_dssp --S--SEEEE--SS-----GGG---GG--------------------SEEEEEE-SSHHHHHHHHHHHHHHHHTTEEEE
T ss_pred CCCCCCEEEECCCCC--c-chh---hcc-------------------cEEEEEecCCHHHHHHHHHHHHHHHHcCCCCc
Confidence 334488999985532 2 122 221 13567888888778888999999999998754
No 439
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=90.81 E-value=0.51 Score=48.24 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+++..++.-+++.+++|++|.|+|||..+-.++...
T Consensus 158 rvID~l~PIGkGQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 158 RIIDLIAPIGKGQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred eeeeeecccccCceEEEeCCCCCChhHHHHHHHHHH
Confidence 444444443455689999999999998776655443
No 440
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=90.80 E-value=2 Score=45.06 Aligned_cols=34 Identities=18% Similarity=0.108 Sum_probs=24.5
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (516)
+...++++++|+|||.++..++..+ +.++++++.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~ 131 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAA 131 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecC
Confidence 3457888999999999988776443 345666553
No 441
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.80 E-value=1.5 Score=47.02 Aligned_cols=88 Identities=10% Similarity=0.109 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
++|-.+...++...- ..|.++||.++.+.-+..+++.| ++.++||+++..+|.+...+..++ +.+|+|+|..
T Consensus 8 sGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVGTrs 85 (505)
T TIGR00595 8 SGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIGTRS 85 (505)
T ss_pred CCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEECChH
Confidence 456555544454333 45789999999998887777666 255799999999999988888887 8899999854
Q ss_pred CcccccccccCEEEEec
Q 010184 324 GDNSIDIPEANVIIQIS 340 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~ 340 (516)
.- =..+++.+.||+..
T Consensus 86 al-f~p~~~l~lIIVDE 101 (505)
T TIGR00595 86 AL-FLPFKNLGLIIVDE 101 (505)
T ss_pred HH-cCcccCCCEEEEEC
Confidence 22 24566777788764
No 442
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.69 E-value=0.3 Score=42.35 Aligned_cols=33 Identities=18% Similarity=0.329 Sum_probs=26.7
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
.+|.+|+|+|||..+-.++.....+++.+.-+.
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 689999999999999999888887776665443
No 443
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=90.59 E-value=2.1 Score=38.76 Aligned_cols=124 Identities=13% Similarity=0.055 Sum_probs=61.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHH-HHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW-AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw-~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
-..+..++|-|||-.++..+.+ .+.+++|+==.+.- | ..|...+-.. .+.....+..-.+.. ..
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~---~~~GE~~~l~~~---~~~~~~~g~g~~~~~------~~ 74 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA---WPNGERAAFEPH---GVEFQVMGTGFTWET------QN 74 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC---cccChHHHHHhc---CcEEEECCCCCeecC------CC
Confidence 4456688999999999887644 35778777433321 1 1122111111 122222111100000 00
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC------chhHHHHHhhcccceEEEEeccCC
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP------AHMFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~------~~~~~~~l~~~~~~~~l~LTATp~ 182 (516)
.+.-.... ........+.+....+++||+||+=... ......++..-+...-+.|||.-.
T Consensus 75 ~~~~~~~~--~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 75 READTAIA--KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred cHHHHHHH--HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 00000000 0012333445556889999999997443 334445566555556788998754
No 444
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=90.48 E-value=0.65 Score=53.18 Aligned_cols=93 Identities=15% Similarity=0.258 Sum_probs=52.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~ 122 (516)
..++.+|+|+|||.+|-.++..+. ...++.+..+..... ....++.+.++.-++ |+
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~--~~~~~l~g~~~g~~g--------------------~~ 654 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK--HSVARLIGAPPGYVG--------------------YE 654 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc--chHHHhcCCCCCccC--------------------cc
Confidence 578999999999999998887653 223344443332221 112223222221000 10
Q ss_pred hhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
. ...+...+....+.+|++||++.+....+..++..+
T Consensus 655 ~----------~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 655 E----------GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred c----------ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 0 011223333466789999999999877666666655
No 445
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.38 E-value=1.3 Score=47.42 Aligned_cols=46 Identities=13% Similarity=0.230 Sum_probs=34.2
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHH
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
+...++++|+|+|||+.|=+++...+-.++-|= --+|.+-|..|=.
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK-GPELlNkYVGESE 590 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVK-GPELLNKYVGESE 590 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeec-CHHHHHHHhhhHH
Confidence 346789999999999999999988887766553 3466666654433
No 446
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.34 E-value=0.88 Score=43.15 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=38.0
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHH
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..+..++.++ ++...+|.+++|+|||..+..++. ..+.+++++.... ...+..+....
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~-~~~~i~~~~~~ 69 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE-SRESIIRQAAQ 69 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHH
Confidence 4577777553 334668889999999998876553 3356788887543 35555544433
No 447
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=90.28 E-value=0.85 Score=41.84 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
..+-+.|.+.+...+..+ ...+|++|+|+|||...-+++...
T Consensus 8 g~~~~~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 8 GTFSPLQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456788999999888775 488999999999998776665444
No 448
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=90.13 E-value=1.3 Score=43.40 Aligned_cols=34 Identities=24% Similarity=0.275 Sum_probs=24.9
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+..+..++...+.+|.+|+|+|||...-.++...
T Consensus 102 l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 102 LPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 4555554433578999999999998887777554
No 449
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.11 E-value=0.76 Score=51.75 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.|.|-|.+++... .+ ..+|.+..|+|||.+.+.-+..+ ..++|+++-|+..+...++.+.+.++
T Consensus 4 ~Ln~~Q~~av~~~--~g---~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 4 HLNPEQREAVKTT--EG---PLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred ccCHHHHHHHhCC--CC---CEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 5889999999742 23 78999999999999877644322 24699999998878888888877654
No 450
>PRK05580 primosome assembly protein PriA; Validated
Probab=90.07 E-value=2.2 Score=47.58 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----C--CceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----~--~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
.++|..+...++...- ..|.++||.++++..+..+.+.| + +..+||+++..+|.+...+...+ ..+|+|+|.
T Consensus 172 GSGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVgTr 249 (679)
T PRK05580 172 GSGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIGAR 249 (679)
T ss_pred CChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEecc
Confidence 3567666555554333 45789999999998877777666 2 45699999999999988888887 889999986
Q ss_pred CCcccccccccCEEEEecCC
Q 010184 323 VGDNSIDIPEANVIIQISSH 342 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~ 342 (516)
..- -+.+.+.+.||+...+
T Consensus 250 sal-~~p~~~l~liVvDEeh 268 (679)
T PRK05580 250 SAL-FLPFKNLGLIIVDEEH 268 (679)
T ss_pred HHh-cccccCCCEEEEECCC
Confidence 332 2456677788876443
No 451
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=90.03 E-value=5.9 Score=39.73 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=23.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
.-..+++|+|+|||.++..++... +++++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345678999999999887766433 45677765
No 452
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.99 E-value=0.73 Score=44.92 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-+.+.|.+.+..++.... +..+|++|||+|||.+.-+++..+.
T Consensus 63 g~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 63 GLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 357788888888776431 3578999999999998887776653
No 453
>PRK09183 transposase/IS protein; Provisional
Probab=89.98 E-value=0.58 Score=45.49 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=27.0
Q ss_pred cccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQ 83 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Q 83 (516)
.+.+|.+|+|+|||..+.+++ +..+.+++++. ...+..+
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~~ 144 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLLQ 144 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHHH
Confidence 488999999999999887764 33455676654 3444443
No 454
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=89.87 E-value=1 Score=48.40 Aligned_cols=45 Identities=16% Similarity=0.214 Sum_probs=34.3
Q ss_pred CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHH
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~ 86 (516)
.+++..++.+|+|+|||+++-+++...+.++|-| +--+|..-|..
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv-kgpEL~sk~vG 510 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV-KGPELFSKYVG 510 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeec-cCHHHHHHhcC
Confidence 4567889999999999999999998888887765 23455554443
No 455
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.86 E-value=0.3 Score=53.79 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
-++.++|++|+|+|||+.|-+.+...+-|++-++-
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSG 377 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 377 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeech
Confidence 45789999999999999999999999999987763
No 456
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=89.82 E-value=2.6 Score=46.98 Aligned_cols=22 Identities=27% Similarity=0.293 Sum_probs=17.4
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
+-..+++|+|+|||.+...++.
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 3457889999999988776663
No 457
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=89.75 E-value=2.1 Score=43.14 Aligned_cols=93 Identities=17% Similarity=0.187 Sum_probs=51.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
...+|.+++|+||+.+|-.+-... .+|++.|-- ..+...+.+. ..|+. .-+.|+|.....
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc-~~~~~~~l~~--~lfG~---~~g~~~ga~~~~----------- 85 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNC-AALSENLLDS--ELFGH---EAGAFTGAQKRH----------- 85 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeC-CCCChHHHHH--HHhcc---ccccccCccccc-----------
Confidence 478999999999999887654322 356665543 3333333221 11222 112233332110
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
. ..+....-|.+++||++.++...-.+++..+.
T Consensus 86 ~-----------------G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 86 Q-----------------GRFERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred C-----------------CchhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 0 01112345899999999999887666666553
No 458
>PRK05973 replicative DNA helicase; Provisional
Probab=89.68 E-value=0.78 Score=43.83 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=34.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..+|.+++|+|||..++.++.. .+.+++++.---. ..|..+.+..+
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 5588899999999999877643 3678888875543 66666666655
No 459
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.68 E-value=1.5 Score=43.78 Aligned_cols=108 Identities=12% Similarity=0.063 Sum_probs=65.2
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
...+.+.|.+-+..++.++ ++.+++++||+|||....+++..+. .+++.+=-+.++.- . .+.-+.
T Consensus 125 ~gt~~~~~~ayL~~~ie~~--~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~~~----------~-~~n~~~ 191 (312)
T COG0630 125 YGTISPEQAAYLWLAIEAR--KSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPELKL----------P-HENWVQ 191 (312)
T ss_pred cCCCCHHHHHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccccC----------C-CCCEEE
Confidence 4566777777777777766 4999999999999998888877765 45655555544211 0 111233
Q ss_pred EEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH
Q 010184 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF 162 (516)
Q Consensus 101 ~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~ 162 (516)
.++..... ...-|+.++.+ +.....+++++|++|.+---+..+
T Consensus 192 l~~r~~~~-----~~~~v~~~dll--------------~aalR~rPd~IivgEvrg~e~~~~ 234 (312)
T COG0630 192 LVTREGES-----GSSEVSLEDLL--------------RAALRQRPDYIIVGELRGREAFVL 234 (312)
T ss_pred EEecCCCC-----CccccCHHHHH--------------HHHHhcCCCeEEEeeeecHHHHHH
Confidence 33333211 01224444433 222247889999999998654433
No 460
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.67 E-value=1.6 Score=48.70 Aligned_cols=91 Identities=14% Similarity=0.204 Sum_probs=68.1
Q ss_pred CcchHHHHH-HHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---------CCceEecCCCHHHHHHHHHHHhcCCCccEE
Q 010184 249 NPNKFRACE-FLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTI 318 (516)
Q Consensus 249 ~~~k~~~~~-~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vL 318 (516)
.++|-.+.. .++... ..|.+++|.+++..-+...++.+ .+..++|+++..+|.++++...++ +..++
T Consensus 292 GSGKT~va~~~il~~~--~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~Iv 368 (681)
T PRK10917 292 GSGKTVVAALAALAAI--EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIV 368 (681)
T ss_pred CCcHHHHHHHHHHHHH--HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEE
Confidence 345654333 223333 35789999999998887766654 245799999999999999999997 89999
Q ss_pred EEeC-CCcccccccccCEEEEecCC
Q 010184 319 FLSK-VGDNSIDIPEANVIIQISSH 342 (516)
Q Consensus 319 v~t~-~~~~GlDlp~a~~vI~~~~~ 342 (516)
|+|. .+...+.+..+.+||+...|
T Consensus 369 VgT~~ll~~~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 369 IGTHALIQDDVEFHNLGLVIIDEQH 393 (681)
T ss_pred EchHHHhcccchhcccceEEEechh
Confidence 9995 45566788899988886544
No 461
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=89.61 E-value=0.74 Score=50.94 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=29.0
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
+++.+|++|+|+|||..+-.++...+.+++.+.++
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~ 219 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGS 219 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehH
Confidence 35688999999999999999988888887766543
No 462
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=89.44 E-value=0.37 Score=49.22 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=26.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
+.++.+|||+|||+.+-+++.-+.-|+.|-
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 789999999999999999998888886543
No 463
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.38 E-value=3 Score=45.76 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHhCC-----CCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNG-----RARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~-----~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+.+.+.+..|+... ..+-.+|.+|+|+|||.++-.++...
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 334445566665532 12237889999999999887776554
No 464
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=89.29 E-value=0.45 Score=46.10 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=26.8
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.++..|+.+++|+|||+.|-+.+......+|=++
T Consensus 218 pPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvv 251 (440)
T KOG0726|consen 218 PPKGVILYGEPGTGKTLLAKAVANQTSATFLRVV 251 (440)
T ss_pred CCCeeEEeCCCCCchhHHHHHHhcccchhhhhhh
Confidence 5578899999999999999888766655555544
No 465
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=89.24 E-value=0.84 Score=45.99 Aligned_cols=70 Identities=20% Similarity=0.215 Sum_probs=54.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCC--cc-cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRA--RS-GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~--~~-~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+.|.+--|++|...+..++.+... .+ .+|.+..|+|||.+.-.+..+.+.+..|+.+.- ...|+--+.+.
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e--cft~~~lle~I 76 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE--CFTYAILLEKI 76 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH--hccHHHHHHHH
Confidence 566778899999999998887521 12 278899999999999999999999999999853 45566555554
No 466
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.23 E-value=0.75 Score=44.73 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=26.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN 77 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~ 77 (516)
.-.+|.+|+|+|||..++.++.. .+.+++++.--
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 35577899999999999887643 35689998854
No 467
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=89.13 E-value=1.5 Score=43.51 Aligned_cols=130 Identities=15% Similarity=0.067 Sum_probs=67.8
Q ss_pred hhCcchHHHHHHHHHHH-----hhcCCCeEEEEeccHHHHHHHHHHh-CC----ceEecCCCHHHHHHHH----------
Q 010184 247 VMNPNKFRACEFLIRFH-----EQQRGDKIIVFADNLFALTEYAMKL-RK----PMIYGATSHVERTKIL---------- 306 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~-----~~~~~~k~iVF~~~~~~~~~l~~~L-~~----~~i~g~~~~~eR~~~l---------- 306 (516)
...++||..+..|+... . ..+.+++|.++..+.++.+...| +. ..+.|.....+....-
T Consensus 92 ~~tS~KF~~L~~Li~~li~~~~~-~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~ 170 (297)
T PF11496_consen 92 AYTSGKFQFLNDLIDSLIDRDRR-EYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSS 170 (297)
T ss_dssp HHT-HHHHHHHHHHHHH-----T-TSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-----------
T ss_pred HHcCchHHHHHHHHHHHHhhhcc-cCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccc
Confidence 35678999999999877 5 66789999999999999999988 22 2334433222211111
Q ss_pred --HHHhcC--CCccEEEEeCC-Cccc----ccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEE
Q 010184 307 --QAFKCS--RDLNTIFLSKV-GDNS----IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377 (516)
Q Consensus 307 --~~F~~~--~~~~vLv~t~~-~~~G----lDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~ 377 (516)
...... ..+.+-++|.. +... ++-..++.||.+|+.+......+|.+=..+|.+ ..+-
T Consensus 171 ~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-------------~~~P 237 (297)
T PF11496_consen 171 NNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-------------RLCP 237 (297)
T ss_dssp -----------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------------------S--
T ss_pred cccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-------------CCCc
Confidence 011111 13333344433 2221 233366889988887655555677765555532 2577
Q ss_pred EEEEEcCCchhhh
Q 010184 378 FYSLVSTDTQEMF 390 (516)
Q Consensus 378 ~y~lv~~~t~e~~ 390 (516)
++.|+..+|+|-.
T Consensus 238 iirLv~~nSiEHi 250 (297)
T PF11496_consen 238 IIRLVPSNSIEHI 250 (297)
T ss_dssp EEEEEETTSHHHH
T ss_pred EEEEeeCCCHHHH
Confidence 8999999999863
No 468
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=89.10 E-value=0.9 Score=45.19 Aligned_cols=40 Identities=13% Similarity=0.237 Sum_probs=32.7
Q ss_pred cEEEEccCccCCchhHHHHHhhcccceEEEEeccCCCCcc
Q 010184 147 GLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVREDE 186 (516)
Q Consensus 147 ~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~~~~ 186 (516)
-+||+||+|........-.+..+....+...||.+.+-|-
T Consensus 245 AfVIlDEaQNtT~~QmKMfLTRiGf~skmvItGD~tQiDL 284 (348)
T COG1702 245 AFVILDEAQNTTVGQMKMFLTRIGFESKMVITGDITQIDL 284 (348)
T ss_pred eEEEEecccccchhhhceeeeeecCCceEEEEcCcccccC
Confidence 4899999999766666767888888889999999987553
No 469
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.09 E-value=1.4 Score=41.50 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=33.8
Q ss_pred HHHHHHHhCCC--CcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeC
Q 010184 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN 77 (516)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~ 77 (516)
.+++.++.++- +.-..|.+++|+|||..++.++... +.+++++...
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46778887542 2346788999999999999877543 5688888643
No 470
>PRK14873 primosome assembly protein PriA; Provisional
Probab=89.08 E-value=2.5 Score=46.75 Aligned_cols=91 Identities=7% Similarity=0.013 Sum_probs=71.1
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----C---CceEecCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----R---KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----~---~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t 321 (516)
.++|-++...++...- ..|+.+||.++.+.....+...| + +..+|++++..+|.+...+..+| +.+|+|.|
T Consensus 170 GSGKTevyl~~i~~~l-~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATL-RAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHH-HcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEEc
Confidence 4688888888887665 67889999999998877776666 3 45799999999999999999987 99999999
Q ss_pred CCCcccccccccCEEEEecCC
Q 010184 322 KVGDNSIDIPEANVIIQISSH 342 (516)
Q Consensus 322 ~~~~~GlDlp~a~~vI~~~~~ 342 (516)
..+- =.-+++...||+.+.+
T Consensus 248 RSAv-FaP~~~LgLIIvdEEh 267 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWDDG 267 (665)
T ss_pred ceeE-EeccCCCCEEEEEcCC
Confidence 6542 2455566677776443
No 471
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=89.07 E-value=0.52 Score=39.58 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=21.7
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
.+|.+++|+|||.++-.++...+-++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 47889999999999999988876443
No 472
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=89.02 E-value=1.1 Score=41.30 Aligned_cols=18 Identities=39% Similarity=0.320 Sum_probs=13.5
Q ss_pred cEEEecCCCcHHHHHHHH
Q 010184 46 GIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~ 63 (516)
.++.+.+|+|||+.++..
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 368899999999988776
No 473
>PLN02165 adenylate isopentenyltransferase
Probab=88.92 E-value=0.41 Score=47.92 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=24.3
Q ss_pred hCCCCcccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 39 ~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
.+..+...+|++|||+|||-++..++...+.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 3433346788999999999999998877654
No 474
>PRK05728 DNA polymerase III subunit chi; Validated
Probab=88.92 E-value=7.6 Score=33.91 Aligned_cols=120 Identities=10% Similarity=0.052 Sum_probs=76.1
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----CCceE-ecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKPMI-YGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----~~~~i-~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.+...+-.|+...- ..|.+++|.|.+...++.+-+.| .-.++ ||-.... .. ....|+++. .
T Consensus 13 ~~~~~~c~L~~ka~-~~g~rv~I~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~-~~~PV~l~~---~ 78 (142)
T PRK05728 13 ALEALLCELAEKAL-RAGWRVLVQCEDEEQAEALDEALWTFRDESFLPHGLAGEG---------PA-AGQPVLLTW---P 78 (142)
T ss_pred hHHHHHHHHHHHHH-HCCCEEEEEcCCHHHHHHHHHHhcCCCCCcCCCCCcCCCC---------CC-CCCCEEEEc---C
Confidence 34455556665555 67999999999999999999998 12222 3322110 01 245677662 1
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHcCCc
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYS 405 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~ 405 (516)
..-+.+..+++|+++... + .+..+.. .++.+|..+......++.|-+++.+.||.
T Consensus 79 ~~~~~~~~~~LinL~~~~--p-~~~~~F~----------------------Rvieiv~~d~~~~~~aR~r~r~Yr~~G~~ 133 (142)
T PRK05728 79 GKRNANHRDLLINLDGAV--P-AFAAAFE----------------------RVVDFVGYDEAAKQAARERWKAYRAAGYA 133 (142)
T ss_pred CCCCCCCCcEEEECCCCC--c-chhhccc----------------------EEEEEeCCCHHHHHHHHHHHHHHHHCCCC
Confidence 123556678899885432 2 2222222 35678877777778889999999999998
Q ss_pred eEEE
Q 010184 406 FKVI 409 (516)
Q Consensus 406 ~~vi 409 (516)
...-
T Consensus 134 l~~~ 137 (142)
T PRK05728 134 LTYW 137 (142)
T ss_pred ceEe
Confidence 7654
No 475
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.85 E-value=1 Score=45.87 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.-.+++..++.-+++.+++|.+|.|+|||.....++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4455677766654555689999999999999988766544
No 476
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=88.70 E-value=0.87 Score=46.78 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=56.5
Q ss_pred cccEEEecCCCcHHHHHHHHH--Hhc-CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA--CRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i--~~~-~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
.+++|.++||+||++.|-.+- ... ...-.|-+.-.++.+. -.+.. .||. .-+.|+|....+ .
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en-~~~~e-LFG~---~kGaftGa~~~k----~------ 166 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSEN-LQEAE-LFGH---EKGAFTGAQGGK----A------ 166 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcC-HHHHH-Hhcc---ccceeecccCCc----C------
Confidence 588999999999999986643 222 2334444454543332 22333 4554 335566643321 1
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
..+....=|.+++||.|+++...-.+++..+.
T Consensus 167 ------------------Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le 198 (403)
T COG1221 167 ------------------GLFEQANGGTLFLDEIHRLPPEGQEKLLRVLE 198 (403)
T ss_pred ------------------chheecCCCEEehhhhhhCCHhHHHHHHHHHH
Confidence 11212445799999999999887666666554
No 477
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=88.70 E-value=5.6 Score=38.96 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=23.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
+..++++|+|+|||.++..++... +++++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 456777999999999888766433 45677776
No 478
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=88.56 E-value=0.31 Score=57.84 Aligned_cols=89 Identities=21% Similarity=0.394 Sum_probs=70.6
Q ss_pred eEEEEeccHHHHHHHHHHh------CCceEecCCC-----------HHHHHHHHHHHhcCCCccEEEEeCCCcccccccc
Q 010184 270 KIIVFADNLFALTEYAMKL------RKPMIYGATS-----------HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (516)
Q Consensus 270 k~iVF~~~~~~~~~l~~~L------~~~~i~g~~~-----------~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~ 332 (516)
..++|++....+..+.+.+ ...++.|.+. ...+.+++..|..+ .+++|+.|.++.+|+|+|.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~-~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH-ELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-hhhHHHHHHHHHhhcchhh
Confidence 3588999988877777766 2445666541 12356789999997 9999999999999999999
Q ss_pred cCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 333 ANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 333 a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
++.++..+.+. ..+.++|+.||+-++.
T Consensus 373 ~~~~~~~~~~~-~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPT-YYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcc-hHHHHHHhhcccccch
Confidence 99888776665 8999999999987665
No 479
>PRK04841 transcriptional regulator MalT; Provisional
Probab=88.51 E-value=4.6 Score=46.70 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=26.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
+-++|.+|.|.|||.....++...+ ++.|+.-
T Consensus 33 ~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 33 RLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 4689999999999999988887666 8888864
No 480
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.49 E-value=1.3 Score=41.98 Aligned_cols=47 Identities=26% Similarity=0.331 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCC--CcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeC
Q 010184 31 EKSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN 77 (516)
Q Consensus 31 ~~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~ 77 (516)
..++..++.++- +.-..|.+++|+|||..++.++.. .+.+++++.-.
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 356788887542 235688899999999998887743 35788888765
No 481
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=88.42 E-value=1.4 Score=37.50 Aligned_cols=45 Identities=22% Similarity=0.235 Sum_probs=32.2
Q ss_pred EEecCCCcHHHHHHHHHHhcC-----CC------EEEEEeChhhHHHHHHHHHHhh
Q 010184 48 IVLPCGAGKSLVGVSAACRIK-----KS------CLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~-----~~------~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
+.++||+|||.++-.++..+- .+ ...-.|...-+.+.+.+++.|.
T Consensus 58 fHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 58 FHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred eecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 459999999999988886642 11 2223366667888888888884
No 482
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=88.41 E-value=2.6 Score=37.88 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=22.2
Q ss_pred cEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
.++.+++|+|||.++..++... +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5788999999999988776543 45555554
No 483
>PRK10867 signal recognition particle protein; Provisional
Probab=88.39 E-value=2.3 Score=44.53 Aligned_cols=32 Identities=31% Similarity=0.236 Sum_probs=23.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc----CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~ 75 (516)
.-.++++++|+|||.++..++..+ ++++++++
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 346788999999999888776432 45666665
No 484
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=88.34 E-value=3.1 Score=46.62 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=24.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (516)
...+|.+++|+|||.+|-.+-... +++++.+-.
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c 435 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNC 435 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEec
Confidence 488999999999999887765432 356666543
No 485
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=88.30 E-value=2.3 Score=42.52 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=37.2
Q ss_pred HHHHHHHHh-CCCCcc--cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHH
Q 010184 31 EKSLSKMFG-NGRARS--GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 31 ~~al~~~~~-~~~~~~--~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..+++..+. ++-++. .-|.+|.|+|||..++.++.. .++.|++|-|..++-..|...+
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 345677776 432223 347899999999998877643 4678999999888777665543
No 486
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.11 E-value=2.2 Score=43.32 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=19.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+..+|++|||+|||.+.-+++..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i 146 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYI 146 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh
Confidence 477899999999999887776554
No 487
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=87.91 E-value=1.2 Score=44.94 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=26.3
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeC
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATN 77 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~ 77 (516)
++..++++|+|+|||-.|++++..++ -|+..++-+
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgS 86 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGS 86 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGG
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccc
Confidence 35778889999999999999999987 466666643
No 488
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=87.64 E-value=2.6 Score=42.66 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=32.4
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh--c-------CCCEEEEEeChh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~--~-------~~~~Lvl~P~~~ 79 (516)
..+..++.++ ...-..|.+++|+|||..++.++.. . .+++++|..-..
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 3466666654 2234568899999999998876632 1 247999987654
No 489
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=87.60 E-value=0.56 Score=46.39 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
-.+|++||++|||-.++.++.+.+..++
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 4688999999999999999999887543
No 490
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=87.57 E-value=2.8 Score=45.39 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=51.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
...+|.+++|+|||.+|-.+-... .++++.|-- ..+-..|.+. ..|+.. -+.+++.... .
T Consensus 220 ~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c-~~~~~~~~~~--~lfg~~---~~~~~~~~~~-----------~ 282 (534)
T TIGR01817 220 STVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNC-AALSETLLES--ELFGHE---KGAFTGAIAQ-----------R 282 (534)
T ss_pred CCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeec-CCCCHHHHHH--HHcCCC---CCccCCCCcC-----------C
Confidence 478999999999999987766543 345555543 3333333221 112211 1112221110 0
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
.+ .+....-|.+++||+|.++.....+++..+.
T Consensus 283 ~g-----------------~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~ 315 (534)
T TIGR01817 283 KG-----------------RFELADGGTLFLDEIGEISPAFQAKLLRVLQ 315 (534)
T ss_pred CC-----------------cccccCCCeEEEechhhCCHHHHHHHHHHHh
Confidence 00 0111345799999999999876666666553
No 491
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.56 E-value=3.6 Score=44.27 Aligned_cols=123 Identities=18% Similarity=0.275 Sum_probs=72.1
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHh-----cCCCEEEEEeChhhHHH----HHHHHHHhhCCCCCcEEEEeCCcc-cccc
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQ----WAFQFKLWSTIQDDQICRFTSDSK-ERFR 111 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L~~Q----w~~e~~~~~~~~~~~v~~~~~~~~-~~~~ 111 (516)
+.+..+..-|=--|||...+.+|+- .+-++.+++.-+-..+- ....+++|++.... +.. .++.- -..+
T Consensus 201 KQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~v-i~~-k~~tI~~s~p 278 (668)
T PHA03372 201 KQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHT-IEN-KDNVISIDHR 278 (668)
T ss_pred hccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccce-eee-cCcEEEEecC
Confidence 3456788889999999765554433 35689999988753333 34556788754321 111 11100 0001
Q ss_pred C-CCcEEEEc-hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc--cceEEEEeccC
Q 010184 112 G-NAGVVVTT-YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK--SHCKLGLTATL 181 (516)
Q Consensus 112 ~-~~~IvV~T-~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~--~~~~l~LTATp 181 (516)
+ ...++.++ ++ -..++...+.++++||||-++...+..++..+. ....|..|.|-
T Consensus 279 g~Kst~~fasc~n---------------~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~N 337 (668)
T PHA03372 279 GAKSTALFASCYN---------------TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISSTN 337 (668)
T ss_pred CCcceeeehhhcc---------------CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCCC
Confidence 1 11222222 11 124556889999999999999999998887663 33445555543
No 492
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=87.55 E-value=5.6 Score=38.10 Aligned_cols=39 Identities=10% Similarity=0.167 Sum_probs=24.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-C-CCEEEEEeChhhHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-K-KSCLCLATNAVSVD 82 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-~-~~~Lvl~P~~~L~~ 82 (516)
+-..++++.|+|||++.=++.... + ..++|+.|...+..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~ 92 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSD 92 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhH
Confidence 367788999999999887444333 3 34444555544333
No 493
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.54 E-value=4.4 Score=42.20 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=17.4
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
+...+++|+|+|||.+...++.
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4678889999999988765553
No 494
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=87.53 E-value=5.5 Score=37.69 Aligned_cols=112 Identities=16% Similarity=0.158 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cC---CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~---~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
|.-.+-++.||-+.++|..+-.+..-.---+++.+++.- +. -++||++.+-+-.-.|++-+...+++...+
T Consensus 142 ~~hae~v~~WFF~qGGRGA~~S~GSRlqNiLvasa~isIL~~LYGdr~~tLVLA~~PERLGEWRRGLQDcLGi~R~D--- 218 (283)
T PF11285_consen 142 PIHAERVEDWFFNQGGRGAQRSMGSRLQNILVASAAISILGELYGDRFQTLVLANSPERLGEWRRGLQDCLGISRED--- 218 (283)
T ss_pred HHHHHHHHHHHhccCCCcccccccchHHHHHHHHHHHHHHHHHhccceeeeeecCChhHHHHHHHHHHHhhCCCccc---
Confidence 334455666665543345544444444444555554433 22 479999999988999999999998875432
Q ss_pred EeCCccccccCCC-cEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc
Q 010184 102 FTSDSKERFRGNA-GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (516)
Q Consensus 102 ~~~~~~~~~~~~~-~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~ 159 (516)
+..+. -|++-.++.+... .-......+.-+||||++....+
T Consensus 219 --------FGP~~GivLFE~~daL~qr---------ADRL~~~~~lPlIiID~aE~~v~ 260 (283)
T PF11285_consen 219 --------FGPNSGIVLFERPDALIQR---------ADRLEERGELPLIIIDAAEEQVS 260 (283)
T ss_pred --------cCCCcceEEeeCcHHHHHH---------HHHHHhcCCCCEEEEccchhhcc
Confidence 22223 3455566666432 22223346778999999987654
No 495
>PRK10436 hypothetical protein; Provisional
Probab=87.52 E-value=0.92 Score=47.89 Aligned_cols=44 Identities=18% Similarity=0.180 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+.+.|.+.+..++... .+-.++++|||||||.+..+++..+.
T Consensus 200 LG~~~~~~~~l~~~~~~~-~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 200 LGMTPAQLAQFRQALQQP-QGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCcCHHHHHHHHHHHHhc-CCeEEEECCCCCChHHHHHHHHHhhC
Confidence 346777888888877543 13667889999999998777666653
No 496
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=87.34 E-value=2.3 Score=46.73 Aligned_cols=24 Identities=25% Similarity=0.175 Sum_probs=19.2
Q ss_pred CCCcccEEEecCCCcHHHHHHHHH
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
......+|.+|+|+|||..+-.+.
T Consensus 173 ~~~~~vlL~Gp~GtGKTTLAr~i~ 196 (615)
T TIGR02903 173 PFPQHIILYGPPGVGKTTAARLAL 196 (615)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHH
Confidence 344578999999999999886654
No 497
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=87.33 E-value=1.1 Score=45.30 Aligned_cols=37 Identities=14% Similarity=0.222 Sum_probs=28.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVS 80 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L 80 (516)
.+.++++|||+|||...-+++..+. .+++.+=++.+|
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 4899999999999998887776654 466665565553
No 498
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=87.24 E-value=0.67 Score=41.72 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
.+.+|+++||+|||.++-.++..++-++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4789999999999999999998887554
No 499
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=87.22 E-value=3.2 Score=46.48 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=37.8
Q ss_pred HHHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHH
Q 010184 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD 82 (516)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~ 82 (516)
...+..++. ++ .+....|.+|+|+|||..++.++. ..+++++++-+-..+..
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH
Confidence 456778887 44 234567889999999999877654 44678988887766553
No 500
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.14 E-value=4.9 Score=42.58 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=18.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
+-..+++|+|+|||.+...++..
T Consensus 257 ~Vi~LvGpnGvGKTTTiaKLA~~ 279 (484)
T PRK06995 257 GVFALMGPTGVGKTTTTAKLAAR 279 (484)
T ss_pred cEEEEECCCCccHHHHHHHHHHH
Confidence 34668899999999988776643
Done!