Query 010184
Match_columns 516
No_of_seqs 380 out of 2592
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 21:43:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010184.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010184hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fwr_A DNA repair protein RAD2 100.0 1.2E-49 4E-54 421.1 31.2 340 19-397 87-466 (472)
2 3mwy_W Chromo domain-containin 100.0 1.5E-47 5.3E-52 428.2 37.4 357 23-410 234-706 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 2.6E-46 8.8E-51 398.3 33.1 347 21-394 33-462 (500)
4 1z3i_X Similar to RAD54-like; 100.0 9.2E-45 3.1E-49 396.3 34.3 351 23-399 53-542 (644)
5 2oca_A DAR protein, ATP-depend 100.0 1.3E-42 4.4E-47 370.8 31.5 359 23-409 111-498 (510)
6 1wp9_A ATP-dependent RNA helic 100.0 3.4E-42 1.2E-46 363.0 26.6 344 23-394 7-484 (494)
7 3dmq_A RNA polymerase-associat 100.0 3.2E-39 1.1E-43 366.4 30.5 350 21-397 149-627 (968)
8 3tbk_A RIG-I helicase domain; 100.0 3.4E-39 1.1E-43 347.0 29.0 340 23-391 2-513 (555)
9 4a2p_A RIG-I, retinoic acid in 100.0 6.6E-39 2.2E-43 345.1 30.8 341 22-391 4-514 (556)
10 3h1t_A Type I site-specific re 100.0 3.6E-39 1.2E-43 350.1 25.4 336 21-383 174-559 (590)
11 4a2q_A RIG-I, retinoic acid in 100.0 2.5E-38 8.6E-43 354.4 31.5 340 23-391 246-755 (797)
12 1s2m_A Putative ATP-dependent 100.0 4E-37 1.4E-41 317.8 30.1 290 25-361 43-354 (400)
13 1xti_A Probable ATP-dependent 100.0 1.4E-37 4.6E-42 320.0 25.3 292 25-361 30-346 (391)
14 2z0m_A 337AA long hypothetical 100.0 6.1E-38 2.1E-42 315.7 22.2 286 24-360 15-311 (337)
15 4a2w_A RIG-I, retinoic acid in 100.0 3.2E-37 1.1E-41 349.4 29.1 344 20-392 243-756 (936)
16 1hv8_A Putative ATP-dependent 100.0 5E-37 1.7E-41 312.5 27.4 289 24-361 27-334 (367)
17 2db3_A ATP-dependent RNA helic 100.0 3.4E-37 1.2E-41 322.0 26.8 291 24-361 77-396 (434)
18 2j0s_A ATP-dependent RNA helic 100.0 1.2E-37 4.1E-42 322.8 23.0 292 25-361 59-372 (410)
19 3eiq_A Eukaryotic initiation f 100.0 1.7E-37 6E-42 321.6 19.0 293 24-361 61-376 (414)
20 2i4i_A ATP-dependent RNA helic 100.0 3.4E-37 1.2E-41 319.9 20.7 293 24-361 36-372 (417)
21 3pey_A ATP-dependent RNA helic 100.0 5.5E-36 1.9E-40 307.9 28.4 296 24-361 26-345 (395)
22 4gl2_A Interferon-induced heli 100.0 3.6E-36 1.2E-40 332.9 27.8 331 22-360 4-509 (699)
23 1fuu_A Yeast initiation factor 100.0 1.1E-37 3.7E-42 320.9 10.0 293 24-361 42-355 (394)
24 3fht_A ATP-dependent RNA helic 100.0 8.7E-35 3E-39 301.0 30.9 297 24-361 46-368 (412)
25 2ykg_A Probable ATP-dependent 100.0 2.5E-35 8.4E-40 326.1 27.2 338 24-389 12-520 (696)
26 3sqw_A ATP-dependent RNA helic 100.0 4.3E-35 1.5E-39 317.1 27.0 303 25-361 43-387 (579)
27 3i5x_A ATP-dependent RNA helic 100.0 5.9E-35 2E-39 315.3 26.7 304 24-361 93-438 (563)
28 3oiy_A Reverse gyrase helicase 100.0 5.5E-35 1.9E-39 303.5 25.5 280 23-361 19-350 (414)
29 2v1x_A ATP-dependent DNA helic 100.0 9.3E-35 3.2E-39 313.2 27.4 291 24-361 43-363 (591)
30 1oyw_A RECQ helicase, ATP-depe 100.0 1.8E-34 6.2E-39 307.6 28.3 282 24-361 24-332 (523)
31 2xgj_A ATP-dependent RNA helic 100.0 9E-34 3.1E-38 321.4 32.7 332 19-385 80-499 (1010)
32 2eyq_A TRCF, transcription-rep 100.0 1.7E-33 6E-38 323.5 31.4 315 20-397 598-934 (1151)
33 3l9o_A ATP-dependent RNA helic 100.0 4.5E-33 1.5E-37 318.3 32.3 333 20-386 179-598 (1108)
34 3fho_A ATP-dependent RNA helic 100.0 6.4E-35 2.2E-39 310.7 12.4 294 25-360 141-458 (508)
35 3fmp_B ATP-dependent RNA helic 100.0 8E-35 2.7E-39 308.0 12.1 297 24-361 113-435 (479)
36 1gm5_A RECG; helicase, replica 100.0 7.8E-34 2.7E-38 312.6 11.8 290 23-361 366-686 (780)
37 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 2.2E-32 7.4E-37 308.6 23.7 322 24-362 270-695 (1038)
38 2p6r_A Afuhel308 helicase; pro 100.0 2.2E-32 7.6E-37 302.4 23.2 310 25-386 25-389 (702)
39 4a4z_A Antiviral helicase SKI2 100.0 2.3E-31 7.8E-36 301.7 30.0 335 20-389 34-496 (997)
40 2zj8_A DNA helicase, putative 100.0 3.3E-32 1.1E-36 301.8 21.8 312 25-388 23-390 (720)
41 2va8_A SSO2462, SKI2-type heli 100.0 4.7E-31 1.6E-35 292.5 29.5 317 25-386 30-409 (715)
42 4ddu_A Reverse gyrase; topoiso 100.0 2E-29 6.7E-34 288.2 28.6 262 23-343 76-388 (1104)
43 4f92_B U5 small nuclear ribonu 100.0 1.1E-28 3.7E-33 291.6 27.1 297 25-361 79-460 (1724)
44 4f92_B U5 small nuclear ribonu 100.0 8.7E-28 3E-32 283.9 26.4 300 25-361 926-1295(1724)
45 1gku_B Reverse gyrase, TOP-RG; 100.0 1.2E-27 4.1E-32 273.5 23.6 259 23-342 55-352 (1054)
46 2v6i_A RNA helicase; membrane, 100.0 1.6E-27 5.4E-32 248.2 18.7 246 44-361 3-279 (431)
47 2jlq_A Serine protease subunit 99.9 4.5E-28 1.6E-32 253.9 13.8 260 25-361 4-299 (451)
48 1yks_A Genome polyprotein [con 99.9 4.5E-28 1.5E-32 252.9 13.6 245 44-360 9-286 (440)
49 2z83_A Helicase/nucleoside tri 99.9 8.2E-28 2.8E-32 252.4 13.1 245 44-360 22-300 (459)
50 2xau_A PRE-mRNA-splicing facto 99.9 2.8E-26 9.7E-31 253.9 22.1 287 25-360 93-432 (773)
51 2whx_A Serine protease/ntpase/ 99.9 9.8E-27 3.4E-31 251.5 17.9 261 25-361 171-466 (618)
52 2wv9_A Flavivirin protease NS2 99.9 6.3E-27 2.2E-31 254.7 13.1 264 25-360 215-520 (673)
53 1tf5_A Preprotein translocase 99.9 2.1E-26 7.3E-31 249.5 16.7 323 23-361 81-534 (844)
54 3o8b_A HCV NS3 protease/helica 99.9 4E-27 1.4E-31 252.9 10.2 254 26-360 218-503 (666)
55 2fsf_A Preprotein translocase 99.9 1.6E-25 5.6E-30 241.9 17.8 323 24-361 73-572 (853)
56 3rc3_A ATP-dependent RNA helic 99.9 3.2E-25 1.1E-29 240.7 18.8 260 44-384 156-444 (677)
57 1nkt_A Preprotein translocase 99.9 1.7E-24 5.8E-29 234.3 20.2 322 24-361 110-606 (922)
58 2fz4_A DNA repair protein RAD2 99.9 1.9E-24 6.6E-29 206.7 18.4 154 13-188 80-235 (237)
59 1rif_A DAR protein, DNA helica 99.9 7E-24 2.4E-28 208.4 14.2 162 24-199 112-280 (282)
60 1c4o_A DNA nucleotide excision 99.9 2.9E-22 9.8E-27 218.7 25.1 93 266-360 437-539 (664)
61 1z5z_A Helicase of the SNF2/RA 99.9 2.8E-22 9.4E-27 195.2 17.9 174 212-398 24-237 (271)
62 2d7d_A Uvrabc system protein B 99.9 2.2E-21 7.7E-26 211.5 24.5 94 266-360 443-545 (661)
63 3b6e_A Interferon-induced heli 99.8 1.2E-20 4.1E-25 177.1 12.9 155 20-180 28-216 (216)
64 1t6n_A Probable ATP-dependent 99.8 1.8E-20 6.2E-25 176.9 14.1 150 25-185 36-204 (220)
65 1vec_A ATP-dependent RNA helic 99.8 1.9E-20 6.3E-25 174.8 13.4 149 24-183 24-189 (206)
66 3jux_A Protein translocase sub 99.8 1.6E-20 5.6E-25 199.2 13.2 106 251-361 458-576 (822)
67 1q0u_A Bstdead; DEAD protein, 99.8 3E-20 1E-24 175.3 12.6 149 24-183 25-193 (219)
68 2gxq_A Heat resistant RNA depe 99.8 3E-20 1E-24 173.4 12.2 147 24-183 22-187 (207)
69 2pl3_A Probable ATP-dependent 99.8 5.3E-20 1.8E-24 175.6 14.0 150 24-183 46-214 (236)
70 1qde_A EIF4A, translation init 99.8 5.1E-20 1.8E-24 174.2 12.9 149 24-183 35-198 (224)
71 3ber_A Probable ATP-dependent 99.8 3.3E-20 1.1E-24 178.7 11.6 150 24-183 64-229 (249)
72 2vl7_A XPD; helicase, unknown 99.8 6.2E-19 2.1E-23 188.4 22.2 67 23-91 5-74 (540)
73 1wrb_A DJVLGB; RNA helicase, D 99.8 1.5E-19 5.2E-24 174.4 15.8 150 24-184 44-222 (253)
74 3iuy_A Probable ATP-dependent 99.8 6.5E-20 2.2E-24 174.1 12.7 148 24-183 41-210 (228)
75 2oxc_A Probable ATP-dependent 99.8 1.2E-19 4.2E-24 172.5 13.5 148 25-183 46-210 (230)
76 3ly5_A ATP-dependent RNA helic 99.8 5.6E-20 1.9E-24 178.5 11.0 150 25-184 76-245 (262)
77 3fe2_A Probable ATP-dependent 99.8 9.5E-20 3.2E-24 174.7 10.7 148 25-183 51-219 (242)
78 3bor_A Human initiation factor 99.8 1.2E-19 4.2E-24 173.4 11.4 148 25-183 52-216 (237)
79 3dkp_A Probable ATP-dependent 99.8 1.2E-19 4E-24 174.2 10.4 151 24-183 50-222 (245)
80 2hjv_A ATP-dependent RNA helic 99.8 1.4E-18 4.7E-23 156.2 15.9 107 250-361 20-131 (163)
81 1t5i_A C_terminal domain of A 99.8 1.5E-18 5E-23 157.4 12.6 107 250-361 16-127 (172)
82 2rb4_A ATP-dependent RNA helic 99.8 5.7E-18 1.9E-22 154.0 14.0 118 252-386 21-148 (175)
83 1fuk_A Eukaryotic initiation f 99.8 3.7E-18 1.3E-22 153.6 12.3 105 252-361 17-126 (165)
84 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.6E-18 1.2E-22 156.7 11.7 109 249-361 29-142 (185)
85 3eaq_A Heat resistant RNA depe 99.8 7.8E-18 2.7E-22 157.9 14.1 108 249-361 15-127 (212)
86 2p6n_A ATP-dependent RNA helic 99.7 1.7E-17 5.9E-22 152.9 13.9 105 251-361 41-150 (191)
87 3fmo_B ATP-dependent RNA helic 99.7 1.6E-17 5.5E-22 164.3 11.9 152 24-183 113-279 (300)
88 3crv_A XPD/RAD3 related DNA he 99.7 2.9E-15 9.8E-20 160.5 28.9 126 24-159 2-187 (551)
89 2yjt_D ATP-dependent RNA helic 99.5 1.6E-18 5.3E-23 156.9 0.0 107 250-361 15-126 (170)
90 3i32_A Heat resistant RNA depe 99.7 8.8E-17 3E-21 158.2 12.2 109 248-361 11-124 (300)
91 2ipc_A Preprotein translocase 99.6 2.5E-15 8.6E-20 162.5 16.4 126 23-158 77-215 (997)
92 3llm_A ATP-dependent RNA helic 99.6 6E-14 2.1E-18 133.5 17.0 146 24-183 60-220 (235)
93 4a15_A XPD helicase, ATP-depen 99.4 3E-12 1E-16 138.5 19.6 67 24-92 2-75 (620)
94 3hgt_A HDA1 complex subunit 3; 99.3 3.6E-12 1.2E-16 124.4 10.5 128 247-391 105-243 (328)
95 3e1s_A Exodeoxyribonuclease V, 98.3 3.2E-06 1.1E-10 90.3 13.2 128 23-183 187-317 (574)
96 2gk6_A Regulator of nonsense t 98.3 1.8E-05 6E-10 85.7 18.0 65 24-91 179-247 (624)
97 4b3f_X DNA-binding protein smu 98.2 2.2E-06 7.4E-11 93.3 9.1 66 24-91 188-256 (646)
98 1w36_D RECD, exodeoxyribonucle 98.2 2.7E-06 9.4E-11 91.7 9.1 140 27-183 151-300 (608)
99 2xzl_A ATP-dependent helicase 98.2 1.7E-05 5.9E-10 87.9 15.6 65 24-91 359-427 (802)
100 2wjy_A Regulator of nonsense t 98.1 5.9E-05 2E-09 83.5 16.6 66 23-91 354-423 (800)
101 3upu_A ATP-dependent DNA helic 98.1 3.4E-05 1.1E-09 80.3 13.9 135 24-183 24-166 (459)
102 2o0j_A Terminase, DNA packagin 97.7 0.0006 2.1E-08 68.7 15.3 142 24-184 162-316 (385)
103 3vkw_A Replicase large subunit 97.7 0.0001 3.4E-09 75.3 9.0 109 45-183 163-271 (446)
104 3cpe_A Terminase, DNA packagin 97.5 0.0014 4.9E-08 70.2 16.2 142 24-184 162-316 (592)
105 3lfu_A DNA helicase II; SF1 he 97.5 0.00028 9.5E-09 76.6 9.6 65 25-94 9-80 (647)
106 2j9r_A Thymidine kinase; TK1, 97.2 0.0015 5.3E-08 59.9 9.6 34 46-79 31-67 (214)
107 2orw_A Thymidine kinase; TMTK, 97.2 0.0019 6.6E-08 58.1 10.0 34 45-78 5-41 (184)
108 1xx6_A Thymidine kinase; NESG, 97.1 0.0015 5.3E-08 59.1 9.2 35 44-78 9-46 (191)
109 3pvs_A Replication-associated 97.1 0.0011 3.6E-08 68.6 8.9 44 32-75 39-82 (447)
110 2b8t_A Thymidine kinase; deoxy 97.1 0.00057 1.9E-08 63.6 6.2 36 44-79 13-51 (223)
111 2p65_A Hypothetical protein PF 97.0 0.0031 1.1E-07 55.9 9.5 42 26-67 26-67 (187)
112 3u61_B DNA polymerase accessor 96.9 0.006 2.1E-07 59.8 12.3 53 25-77 29-82 (324)
113 1a5t_A Delta prime, HOLB; zinc 96.9 0.0058 2E-07 60.5 12.0 43 26-68 3-49 (334)
114 1jbk_A CLPB protein; beta barr 96.9 0.0063 2.1E-07 54.0 11.0 42 26-67 26-67 (195)
115 3eie_A Vacuolar protein sortin 96.8 0.0035 1.2E-07 61.7 9.3 33 44-76 52-84 (322)
116 1l8q_A Chromosomal replication 96.8 0.016 5.3E-07 56.9 13.8 43 34-76 26-73 (324)
117 3vfd_A Spastin; ATPase, microt 96.7 0.0048 1.7E-07 62.4 9.2 34 43-76 148-181 (389)
118 2chg_A Replication factor C sm 96.6 0.016 5.6E-07 52.6 12.0 42 26-67 21-62 (226)
119 2qby_B CDC6 homolog 3, cell di 96.6 0.0094 3.2E-07 59.7 11.2 44 24-67 22-69 (384)
120 1d2n_A N-ethylmaleimide-sensit 96.6 0.0051 1.7E-07 58.8 8.8 34 42-75 63-96 (272)
121 3e2i_A Thymidine kinase; Zn-bi 96.6 0.011 3.7E-07 54.2 10.1 36 44-79 29-67 (219)
122 3h4m_A Proteasome-activating n 96.5 0.004 1.4E-07 59.8 7.2 35 42-76 50-84 (285)
123 3ec2_A DNA replication protein 96.5 0.013 4.6E-07 52.0 9.9 60 27-87 16-85 (180)
124 2zan_A Vacuolar protein sortin 96.5 0.0049 1.7E-07 63.6 7.9 34 43-76 167-201 (444)
125 2bjv_A PSP operon transcriptio 96.4 0.011 3.9E-07 56.0 9.6 32 44-75 30-64 (265)
126 3pfi_A Holliday junction ATP-d 96.4 0.015 5.1E-07 57.3 10.6 48 27-74 34-86 (338)
127 2qp9_X Vacuolar protein sortin 96.4 0.0037 1.3E-07 62.5 6.2 32 44-75 85-116 (355)
128 3syl_A Protein CBBX; photosynt 96.4 0.025 8.5E-07 54.8 11.9 24 44-67 68-91 (309)
129 1xwi_A SKD1 protein; VPS4B, AA 96.3 0.0025 8.6E-08 62.8 4.5 33 44-76 46-79 (322)
130 3co5_A Putative two-component 96.3 0.0046 1.6E-07 53.0 5.6 25 44-68 28-52 (143)
131 2gno_A DNA polymerase III, gam 96.3 0.024 8.1E-07 55.3 11.3 34 32-65 7-40 (305)
132 1fnn_A CDC6P, cell division co 96.3 0.029 9.8E-07 56.1 12.2 52 24-75 19-80 (389)
133 2zpa_A Uncharacterized protein 96.2 0.013 4.4E-07 62.8 9.5 120 23-185 173-292 (671)
134 4b4t_J 26S protease regulatory 96.2 0.0065 2.2E-07 61.2 6.6 37 42-78 181-217 (405)
135 2orv_A Thymidine kinase; TP4A 96.2 0.016 5.4E-07 53.7 8.6 36 44-79 20-58 (234)
136 1sxj_B Activator 1 37 kDa subu 96.2 0.016 5.5E-07 56.4 9.3 42 26-67 25-66 (323)
137 3d8b_A Fidgetin-like protein 1 96.1 0.0089 3E-07 59.7 7.3 35 42-76 116-150 (357)
138 1iqp_A RFCS; clamp loader, ext 96.1 0.027 9.4E-07 54.8 10.7 41 27-67 30-70 (327)
139 1sxj_D Activator 1 41 kDa subu 96.1 0.0051 1.7E-07 60.9 5.2 39 29-67 44-82 (353)
140 3bos_A Putative DNA replicatio 96.1 0.0069 2.4E-07 56.1 5.8 39 29-67 38-76 (242)
141 1hqc_A RUVB; extended AAA-ATPa 96.0 0.047 1.6E-06 53.2 12.0 49 26-74 16-69 (324)
142 1njg_A DNA polymerase III subu 96.0 0.062 2.1E-06 49.2 12.2 43 25-67 26-69 (250)
143 2z4s_A Chromosomal replication 96.0 0.088 3E-06 54.0 14.3 34 43-76 130-168 (440)
144 2qz4_A Paraplegin; AAA+, SPG7, 96.0 0.011 3.9E-07 55.7 6.9 35 43-77 39-73 (262)
145 1w4r_A Thymidine kinase; type 95.9 0.026 8.8E-07 50.9 8.3 34 44-77 21-57 (195)
146 3n70_A Transport activator; si 95.8 0.0096 3.3E-07 51.0 5.2 24 44-67 25-48 (145)
147 4b4t_L 26S protease subunit RP 95.8 0.007 2.4E-07 61.8 4.9 36 42-77 214-249 (437)
148 3hjh_A Transcription-repair-co 95.8 0.03 1E-06 58.1 9.6 81 45-128 16-117 (483)
149 2v1u_A Cell division control p 95.8 0.054 1.9E-06 53.9 11.3 44 24-67 21-68 (387)
150 4b4t_H 26S protease regulatory 95.7 0.014 4.6E-07 59.8 6.7 36 42-77 242-277 (467)
151 1um8_A ATP-dependent CLP prote 95.7 0.012 4.1E-07 59.1 6.4 32 44-75 73-104 (376)
152 3cf0_A Transitional endoplasmi 95.7 0.02 6.8E-07 55.6 7.7 33 43-75 49-81 (301)
153 3te6_A Regulatory protein SIR3 95.7 0.039 1.3E-06 53.9 9.6 41 27-67 25-69 (318)
154 1uaa_A REP helicase, protein ( 95.7 0.02 6.9E-07 62.3 8.4 81 25-126 2-89 (673)
155 4b4t_I 26S protease regulatory 95.6 0.0089 3.1E-07 60.6 4.6 36 42-77 215-250 (437)
156 3uk6_A RUVB-like 2; hexameric 95.5 0.078 2.7E-06 52.7 11.5 32 44-75 71-104 (368)
157 2chq_A Replication factor C sm 95.5 0.021 7E-07 55.5 6.8 41 27-67 22-62 (319)
158 4b4t_M 26S protease regulatory 95.4 0.0078 2.7E-07 61.5 3.5 37 42-78 214-250 (434)
159 1sxj_A Activator 1 95 kDa subu 95.4 0.042 1.4E-06 57.7 9.3 52 26-77 43-111 (516)
160 3t15_A Ribulose bisphosphate c 95.4 0.017 5.9E-07 55.9 5.8 34 43-76 36-69 (293)
161 2qby_A CDC6 homolog 1, cell di 95.4 0.044 1.5E-06 54.5 9.0 53 23-75 21-83 (386)
162 3hu3_A Transitional endoplasmi 95.3 0.028 9.6E-07 58.5 7.6 34 42-75 237-270 (489)
163 1jr3_A DNA polymerase III subu 95.3 0.078 2.7E-06 52.7 10.4 43 26-68 20-63 (373)
164 1ojl_A Transcriptional regulat 95.3 0.017 5.7E-07 56.3 5.3 32 44-75 26-60 (304)
165 1qvr_A CLPB protein; coiled co 95.2 0.056 1.9E-06 60.5 10.1 41 27-67 175-215 (854)
166 1g5t_A COB(I)alamin adenosyltr 95.0 0.17 5.9E-06 45.5 10.7 126 44-182 29-163 (196)
167 4b4t_K 26S protease regulatory 95.0 0.015 5.1E-07 59.3 4.1 36 42-77 205-240 (428)
168 1sxj_C Activator 1 40 kDa subu 94.8 0.21 7.1E-06 49.1 12.0 40 28-67 31-70 (340)
169 3b9p_A CG5977-PA, isoform A; A 94.8 0.018 6.2E-07 55.5 3.9 34 43-76 54-87 (297)
170 1sxj_E Activator 1 40 kDa subu 94.6 0.16 5.3E-06 50.1 10.4 40 28-67 20-60 (354)
171 1r6b_X CLPA protein; AAA+, N-t 94.5 0.046 1.6E-06 60.3 7.0 41 27-67 191-231 (758)
172 2r2a_A Uncharacterized protein 94.5 0.014 4.8E-07 53.1 2.2 22 45-66 7-28 (199)
173 4fcw_A Chaperone protein CLPB; 94.4 0.053 1.8E-06 52.4 6.5 31 45-75 49-82 (311)
174 2cvh_A DNA repair and recombin 94.4 0.06 2E-06 49.0 6.5 55 32-86 7-64 (220)
175 2ce7_A Cell division protein F 94.3 0.074 2.5E-06 55.0 7.4 33 43-75 49-81 (476)
176 1pjr_A PCRA; DNA repair, DNA r 94.1 0.077 2.6E-06 58.1 7.4 74 25-103 11-93 (724)
177 2dr3_A UPF0273 protein PH0284; 93.8 0.15 5E-06 47.3 7.8 56 34-90 12-72 (247)
178 3cf2_A TER ATPase, transitiona 93.3 0.11 3.9E-06 57.0 7.0 34 42-75 237-270 (806)
179 1n0w_A DNA repair protein RAD5 93.2 0.3 1E-05 45.0 9.0 46 33-78 12-68 (243)
180 2kjq_A DNAA-related protein; s 92.9 0.13 4.3E-06 44.3 5.3 23 44-66 37-59 (149)
181 1w5s_A Origin recognition comp 92.8 0.25 8.5E-06 49.6 8.3 44 24-67 24-76 (412)
182 3k1j_A LON protease, ATP-depen 92.7 0.48 1.6E-05 50.6 10.8 32 34-67 53-84 (604)
183 1xp8_A RECA protein, recombina 92.6 0.45 1.5E-05 47.4 9.6 52 32-84 60-117 (366)
184 1r6b_X CLPA protein; AAA+, N-t 92.6 0.16 5.5E-06 55.9 6.9 30 45-74 490-519 (758)
185 3pxi_A Negative regulator of g 92.4 0.06 2.1E-06 59.3 3.3 23 45-67 523-545 (758)
186 3cf2_A TER ATPase, transitiona 92.4 0.11 3.9E-06 57.0 5.4 34 42-75 510-543 (806)
187 2zr9_A Protein RECA, recombina 92.3 0.56 1.9E-05 46.3 9.8 49 31-79 46-100 (349)
188 1u94_A RECA protein, recombina 92.1 0.68 2.3E-05 45.9 10.1 48 32-79 49-102 (356)
189 3io5_A Recombination and repai 91.6 0.8 2.7E-05 44.5 9.6 100 32-158 12-124 (333)
190 1qvr_A CLPB protein; coiled co 91.3 0.15 5.2E-06 56.9 4.9 28 143-170 658-685 (854)
191 1v5w_A DMC1, meiotic recombina 91.2 0.78 2.7E-05 45.1 9.6 48 32-79 109-167 (343)
192 3hr8_A Protein RECA; alpha and 91.2 0.91 3.1E-05 44.9 9.9 49 32-80 47-101 (356)
193 2eyq_A TRCF, transcription-rep 91.2 0.31 1.1E-05 56.1 7.5 79 46-127 20-119 (1151)
194 3kl4_A SRP54, signal recogniti 91.1 1.1 3.6E-05 45.6 10.5 32 44-75 98-132 (433)
195 2r6a_A DNAB helicase, replicat 90.9 0.44 1.5E-05 48.9 7.7 55 33-88 192-251 (454)
196 3dm5_A SRP54, signal recogniti 90.3 3.1 0.00011 42.3 13.1 32 44-75 101-135 (443)
197 1ofh_A ATP-dependent HSL prote 90.2 0.43 1.5E-05 45.7 6.5 34 43-76 50-83 (310)
198 1u0j_A DNA replication protein 90.1 0.54 1.8E-05 44.4 6.8 35 32-66 91-127 (267)
199 3u4q_A ATP-dependent helicase/ 89.7 0.41 1.4E-05 55.6 6.8 64 23-91 8-80 (1232)
200 3cmu_A Protein RECA, recombina 89.7 0.82 2.8E-05 55.0 9.3 48 32-79 1413-1466(2050)
201 3hws_A ATP-dependent CLP prote 88.9 0.35 1.2E-05 47.9 4.9 34 44-77 52-85 (363)
202 2w58_A DNAI, primosome compone 88.6 0.58 2E-05 41.8 5.7 32 44-75 55-89 (202)
203 1tue_A Replication protein E1; 88.1 0.3 1E-05 44.3 3.3 40 31-70 45-85 (212)
204 4a74_A DNA repair and recombin 88.0 0.68 2.3E-05 42.1 5.9 47 32-78 12-69 (231)
205 1lv7_A FTSH; alpha/beta domain 87.8 0.42 1.4E-05 44.7 4.3 32 43-74 45-76 (257)
206 2r8r_A Sensor protein; KDPD, P 87.7 5.1 0.00018 36.7 11.4 31 45-75 8-41 (228)
207 3lda_A DNA repair protein RAD5 87.5 2.1 7.2E-05 43.0 9.5 46 33-78 166-222 (400)
208 2z43_A DNA repair and recombin 87.4 1.1 3.6E-05 43.7 7.1 59 32-90 94-164 (324)
209 1ypw_A Transitional endoplasmi 87.1 0.31 1.1E-05 53.9 3.5 32 43-74 238-269 (806)
210 3a8t_A Adenylate isopentenyltr 87.0 0.31 1.1E-05 47.8 3.0 25 44-68 41-65 (339)
211 3trf_A Shikimate kinase, SK; a 86.4 0.52 1.8E-05 41.4 3.9 29 44-72 6-34 (185)
212 2r62_A Cell division protease 86.3 0.46 1.6E-05 44.6 3.7 32 43-74 44-75 (268)
213 1qhx_A CPT, protein (chloramph 86.1 0.73 2.5E-05 40.1 4.7 30 45-74 5-34 (178)
214 1gm5_A RECG; helicase, replica 86.1 2.2 7.5E-05 46.8 9.4 76 267-343 416-501 (780)
215 1c9k_A COBU, adenosylcobinamid 85.3 0.72 2.4E-05 40.9 4.2 45 46-91 2-46 (180)
216 3foz_A TRNA delta(2)-isopenten 85.1 0.56 1.9E-05 45.4 3.6 25 44-68 11-35 (316)
217 2r44_A Uncharacterized protein 84.8 0.99 3.4E-05 43.9 5.4 32 44-75 47-78 (331)
218 2c9o_A RUVB-like 1; hexameric 84.5 1.2 4.2E-05 45.6 6.1 34 43-76 63-98 (456)
219 2qgz_A Helicase loader, putati 84.4 0.61 2.1E-05 45.1 3.7 33 43-75 152-188 (308)
220 3pxg_A Negative regulator of g 83.7 1 3.5E-05 46.3 5.2 41 27-67 185-225 (468)
221 2zts_A Putative uncharacterize 83.6 1.6 5.5E-05 40.0 6.1 56 34-90 19-80 (251)
222 3vaa_A Shikimate kinase, SK; s 83.3 0.89 3.1E-05 40.6 4.0 28 44-71 26-53 (199)
223 2ze6_A Isopentenyl transferase 83.2 0.78 2.7E-05 42.9 3.7 26 45-70 3-28 (253)
224 1g41_A Heat shock protein HSLU 82.5 1.1 3.9E-05 45.6 4.8 34 43-76 50-83 (444)
225 3cmw_A Protein RECA, recombina 82.5 3.1 0.0001 49.5 9.0 100 32-158 1417-1522(1706)
226 3exa_A TRNA delta(2)-isopenten 82.4 0.72 2.5E-05 44.7 3.1 24 45-68 5-28 (322)
227 1p9r_A General secretion pathw 82.0 2.1 7.1E-05 43.3 6.5 42 25-67 150-191 (418)
228 1ixz_A ATP-dependent metallopr 81.6 1.3 4.5E-05 41.1 4.6 32 44-75 50-81 (254)
229 2i1q_A DNA repair and recombin 81.6 2.3 8E-05 41.1 6.6 59 32-90 85-165 (322)
230 3cmw_A Protein RECA, recombina 81.1 3.3 0.00011 49.2 8.6 98 34-158 720-823 (1706)
231 3crm_A TRNA delta(2)-isopenten 81.1 0.87 3E-05 44.3 3.2 25 44-68 6-30 (323)
232 3bh0_A DNAB-like replicative h 81.0 3.5 0.00012 39.8 7.6 58 32-90 56-117 (315)
233 2x8a_A Nuclear valosin-contain 80.6 1.7 6E-05 41.1 5.2 31 44-74 45-75 (274)
234 3dzd_A Transcriptional regulat 80.4 2.1 7.4E-05 42.4 6.0 92 44-170 153-247 (368)
235 3kb2_A SPBC2 prophage-derived 80.3 1.2 4.2E-05 38.2 3.7 26 45-70 3-28 (173)
236 3iij_A Coilin-interacting nucl 80.1 1.4 4.6E-05 38.5 3.9 28 44-71 12-39 (180)
237 3lw7_A Adenylate kinase relate 79.6 1.3 4.3E-05 38.1 3.5 27 45-72 3-29 (179)
238 2qmh_A HPR kinase/phosphorylas 79.3 1.1 3.7E-05 40.4 2.9 25 44-68 35-59 (205)
239 2q6t_A DNAB replication FORK h 79.1 3.8 0.00013 41.7 7.5 57 32-89 188-249 (444)
240 1iy2_A ATP-dependent metallopr 79.0 1.8 6.1E-05 40.9 4.6 32 44-75 74-105 (278)
241 1zuh_A Shikimate kinase; alpha 78.9 1.4 4.8E-05 37.9 3.6 28 45-72 9-36 (168)
242 2w0m_A SSO2452; RECA, SSPF, un 78.9 3.4 0.00012 37.2 6.5 56 33-89 11-71 (235)
243 2iyv_A Shikimate kinase, SK; t 78.2 1.7 5.9E-05 37.9 4.1 26 45-70 4-29 (184)
244 3cmu_A Protein RECA, recombina 78.1 5 0.00017 48.4 8.9 48 32-79 369-422 (2050)
245 1j8m_F SRP54, signal recogniti 78.0 7 0.00024 37.4 8.6 32 45-76 100-134 (297)
246 4a1f_A DNAB helicase, replicat 77.8 4.9 0.00017 39.3 7.5 56 32-88 34-93 (338)
247 3d3q_A TRNA delta(2)-isopenten 77.7 1.3 4.3E-05 43.5 3.2 24 45-68 9-32 (340)
248 1zp6_A Hypothetical protein AT 77.6 2 6.8E-05 37.7 4.3 31 44-74 10-40 (191)
249 2rhm_A Putative kinase; P-loop 77.5 1.8 6.1E-05 38.0 3.9 27 44-70 6-32 (193)
250 2oap_1 GSPE-2, type II secreti 77.5 3.6 0.00012 42.7 6.8 40 26-67 245-284 (511)
251 1via_A Shikimate kinase; struc 77.5 1.6 5.5E-05 37.8 3.6 26 45-70 6-31 (175)
252 2ffh_A Protein (FFH); SRP54, s 77.4 11 0.00038 38.0 10.1 31 45-75 100-133 (425)
253 3pxi_A Negative regulator of g 77.3 2.6 8.8E-05 46.2 5.9 41 27-67 185-225 (758)
254 1y63_A LMAJ004144AAA protein; 77.2 1.5 5.3E-05 38.5 3.4 23 44-66 11-33 (184)
255 2vhj_A Ntpase P4, P4; non- hyd 77.0 0.91 3.1E-05 44.2 1.9 32 45-76 125-156 (331)
256 1ny5_A Transcriptional regulat 76.9 2.7 9.2E-05 42.0 5.5 93 44-170 161-256 (387)
257 1kag_A SKI, shikimate kinase I 76.6 2.1 7.1E-05 36.9 4.0 26 44-69 5-30 (173)
258 3be4_A Adenylate kinase; malar 76.2 1.6 5.4E-05 39.6 3.2 27 44-70 6-32 (217)
259 1zd8_A GTP:AMP phosphotransfer 76.2 1.9 6.6E-05 39.2 3.9 26 44-69 8-33 (227)
260 2c95_A Adenylate kinase 1; tra 76.1 1.9 6.6E-05 37.9 3.8 27 44-70 10-36 (196)
261 3bgw_A DNAB-like replicative h 76.1 3.3 0.00011 42.2 5.9 57 32-89 185-245 (444)
262 2dhr_A FTSH; AAA+ protein, hex 76.1 2.2 7.4E-05 44.2 4.6 33 44-76 65-97 (499)
263 4eun_A Thermoresistant glucoki 75.8 2 6.8E-05 38.3 3.7 26 43-68 29-54 (200)
264 1e6c_A Shikimate kinase; phosp 75.7 1.9 6.6E-05 37.0 3.6 26 45-70 4-29 (173)
265 3eph_A TRNA isopentenyltransfe 75.5 1.5 5E-05 44.1 3.0 24 45-68 4-27 (409)
266 1aky_A Adenylate kinase; ATP:A 75.4 2 6.9E-05 38.9 3.8 26 44-69 5-30 (220)
267 1in4_A RUVB, holliday junction 75.4 3.5 0.00012 40.1 5.8 28 44-71 52-79 (334)
268 3dl0_A Adenylate kinase; phosp 75.0 2.2 7.5E-05 38.4 3.9 26 45-70 2-27 (216)
269 3bs4_A Uncharacterized protein 74.5 5.2 0.00018 37.5 6.4 59 32-91 8-71 (260)
270 1e9r_A Conjugal transfer prote 74.5 3.7 0.00013 41.5 5.8 39 44-82 54-95 (437)
271 3cm0_A Adenylate kinase; ATP-b 74.3 2.1 7E-05 37.4 3.4 24 45-68 6-29 (186)
272 3sxu_A DNA polymerase III subu 74.3 39 0.0013 28.5 12.3 117 254-409 26-147 (150)
273 3fb4_A Adenylate kinase; psych 74.1 2.3 7.8E-05 38.3 3.7 26 46-71 3-28 (216)
274 1tev_A UMP-CMP kinase; ploop, 73.9 2.1 7.2E-05 37.5 3.4 25 45-69 5-29 (196)
275 2fna_A Conserved hypothetical 73.9 3.9 0.00013 39.6 5.6 48 24-75 15-62 (357)
276 2cdn_A Adenylate kinase; phosp 73.8 2.5 8.7E-05 37.5 4.0 26 45-70 22-47 (201)
277 1qf9_A UMP/CMP kinase, protein 73.7 2.3 7.7E-05 37.2 3.6 25 44-68 7-31 (194)
278 2pt5_A Shikimate kinase, SK; a 73.7 2.4 8.3E-05 36.2 3.7 27 45-71 2-28 (168)
279 1gvn_B Zeta; postsegregational 73.4 2.4 8.2E-05 40.4 3.9 31 44-74 34-64 (287)
280 3t61_A Gluconokinase; PSI-biol 73.3 2.7 9.2E-05 37.4 4.0 25 44-68 19-43 (202)
281 1pzn_A RAD51, DNA repair and r 73.1 4.3 0.00015 39.8 5.8 47 32-78 118-175 (349)
282 2bwj_A Adenylate kinase 5; pho 73.0 2.5 8.4E-05 37.3 3.6 24 45-68 14-37 (199)
283 1ak2_A Adenylate kinase isoenz 73.0 2.5 8.5E-05 38.7 3.7 26 44-69 17-42 (233)
284 3umf_A Adenylate kinase; rossm 72.9 2.4 8.3E-05 38.6 3.6 26 44-69 30-55 (217)
285 1zak_A Adenylate kinase; ATP:A 72.8 2.3 7.8E-05 38.5 3.4 26 44-69 6-31 (222)
286 3sr0_A Adenylate kinase; phosp 72.6 2.4 8.2E-05 38.3 3.5 24 46-69 3-26 (206)
287 2vli_A Antibiotic resistance p 72.6 2 6.9E-05 37.3 2.9 28 45-72 7-34 (183)
288 1ex7_A Guanylate kinase; subst 72.3 3.1 0.00011 36.9 4.0 27 44-70 2-28 (186)
289 4dzz_A Plasmid partitioning pr 72.2 8.3 0.00028 33.9 7.0 26 50-75 9-37 (206)
290 1e4v_A Adenylate kinase; trans 71.8 2.8 9.5E-05 37.7 3.8 26 45-70 2-27 (214)
291 1nks_A Adenylate kinase; therm 71.8 3.3 0.00011 36.1 4.2 24 45-68 3-26 (194)
292 1kht_A Adenylate kinase; phosp 71.8 2.1 7.3E-05 37.4 2.9 24 45-68 5-28 (192)
293 2p5t_B PEZT; postsegregational 71.7 2.1 7E-05 39.9 2.9 32 44-75 33-64 (253)
294 3a4m_A L-seryl-tRNA(SEC) kinas 71.6 3.5 0.00012 38.5 4.5 30 45-74 6-38 (260)
295 2jaq_A Deoxyguanosine kinase; 71.0 2.7 9.3E-05 37.1 3.4 25 46-70 3-27 (205)
296 2v54_A DTMP kinase, thymidylat 70.6 3.3 0.00011 36.6 3.9 31 44-74 5-36 (204)
297 2qen_A Walker-type ATPase; unk 70.4 5.9 0.0002 38.1 6.0 48 24-75 14-61 (350)
298 1ukz_A Uridylate kinase; trans 70.3 3.2 0.00011 36.8 3.8 26 44-69 16-41 (203)
299 2pez_A Bifunctional 3'-phospho 70.2 4 0.00014 35.4 4.3 31 44-74 6-39 (179)
300 3nwj_A ATSK2; P loop, shikimat 69.8 3.4 0.00011 38.6 3.9 27 44-70 49-75 (250)
301 2z0h_A DTMP kinase, thymidylat 69.7 3.8 0.00013 35.9 4.1 28 46-73 3-33 (197)
302 3u4q_B ATP-dependent helicase/ 69.6 5.5 0.00019 45.9 6.4 46 46-92 4-55 (1166)
303 1ly1_A Polynucleotide kinase; 69.5 2.8 9.6E-05 36.1 3.1 21 45-65 4-24 (181)
304 2bdt_A BH3686; alpha-beta prot 69.4 3.6 0.00012 36.0 3.9 24 45-68 4-27 (189)
305 1g8p_A Magnesium-chelatase 38 69.0 2.9 9.9E-05 40.6 3.4 25 44-68 46-70 (350)
306 1knq_A Gluconate kinase; ALFA/ 68.6 3.3 0.00011 35.7 3.3 25 44-68 9-33 (175)
307 3nbx_X ATPase RAVA; AAA+ ATPas 68.5 4.9 0.00017 41.6 5.1 25 44-68 42-66 (500)
308 3tau_A Guanylate kinase, GMP k 68.3 3.3 0.00011 37.2 3.4 25 44-68 9-33 (208)
309 2pbr_A DTMP kinase, thymidylat 67.7 4.6 0.00016 35.2 4.2 28 46-73 3-33 (195)
310 2grj_A Dephospho-COA kinase; T 67.6 3.6 0.00012 36.6 3.5 24 45-68 14-37 (192)
311 1q57_A DNA primase/helicase; d 67.4 6.9 0.00024 40.4 6.1 55 33-88 231-290 (503)
312 2qor_A Guanylate kinase; phosp 67.2 3.9 0.00013 36.5 3.6 25 44-68 13-37 (204)
313 3b85_A Phosphate starvation-in 67.1 5.1 0.00017 36.1 4.4 38 24-64 5-43 (208)
314 3tlx_A Adenylate kinase 2; str 66.8 3.8 0.00013 37.8 3.6 27 42-68 28-54 (243)
315 1kgd_A CASK, peripheral plasma 66.8 3.9 0.00013 35.7 3.4 24 44-67 6-29 (180)
316 2xxa_A Signal recognition part 66.7 14 0.00049 37.3 8.1 32 44-75 101-136 (433)
317 2px0_A Flagellar biosynthesis 66.7 6 0.0002 37.8 5.0 32 44-75 106-141 (296)
318 1uf9_A TT1252 protein; P-loop, 66.2 5.1 0.00017 35.3 4.2 23 44-66 9-31 (203)
319 2xb4_A Adenylate kinase; ATP-b 66.1 3.9 0.00013 37.1 3.4 23 46-68 3-25 (223)
320 1nlf_A Regulatory protein REPA 66.0 10 0.00035 35.5 6.5 46 44-90 31-89 (279)
321 1jjv_A Dephospho-COA kinase; P 65.5 4.3 0.00015 36.1 3.6 24 45-69 4-27 (206)
322 3ake_A Cytidylate kinase; CMP 63.8 5.1 0.00017 35.4 3.7 24 45-68 4-27 (208)
323 1cke_A CK, MSSA, protein (cyti 63.7 4.6 0.00016 36.4 3.4 24 45-68 7-30 (227)
324 3uie_A Adenylyl-sulfate kinase 63.6 5.6 0.00019 35.2 3.9 24 44-67 26-49 (200)
325 2yvu_A Probable adenylyl-sulfa 63.5 6.5 0.00022 34.2 4.3 31 44-74 14-47 (186)
326 3m6a_A ATP-dependent protease 63.5 6.8 0.00023 41.0 5.1 31 44-74 109-139 (543)
327 1vma_A Cell division protein F 62.9 7.1 0.00024 37.5 4.8 31 45-75 106-139 (306)
328 3oiy_A Reverse gyrase helicase 62.9 23 0.0008 35.0 8.9 75 266-341 62-148 (414)
329 2if2_A Dephospho-COA kinase; a 62.6 5.5 0.00019 35.2 3.7 23 45-68 3-25 (204)
330 3fdi_A Uncharacterized protein 62.5 6.3 0.00022 35.2 4.1 28 45-72 8-35 (201)
331 2woo_A ATPase GET3; tail-ancho 62.5 8.2 0.00028 37.4 5.2 32 44-75 20-54 (329)
332 4akg_A Glutathione S-transfera 62.4 8.1 0.00028 48.2 6.1 57 33-91 1259-1317(2695)
333 4ag6_A VIRB4 ATPase, type IV s 61.3 7.7 0.00026 38.5 4.9 36 44-79 36-74 (392)
334 1zu4_A FTSY; GTPase, signal re 61.3 7.2 0.00025 37.7 4.5 31 45-75 107-140 (320)
335 2plr_A DTMP kinase, probable t 61.0 5 0.00017 35.6 3.1 25 45-69 6-30 (213)
336 3sfz_A APAF-1, apoptotic pepti 61.0 39 0.0013 38.6 11.5 52 24-75 126-186 (1249)
337 3ney_A 55 kDa erythrocyte memb 60.9 5.9 0.0002 35.4 3.5 25 44-68 20-44 (197)
338 2eyu_A Twitching motility prot 60.3 4.7 0.00016 37.8 2.9 21 44-64 26-46 (261)
339 4akg_A Glutathione S-transfera 59.8 9.9 0.00034 47.4 6.2 54 23-76 624-678 (2695)
340 2ga8_A Hypothetical 39.9 kDa p 59.8 5.9 0.0002 38.9 3.6 28 40-67 21-48 (359)
341 3iqw_A Tail-anchored protein t 59.7 8.6 0.00029 37.4 4.8 42 35-76 8-52 (334)
342 2j41_A Guanylate kinase; GMP, 59.6 5.6 0.00019 35.1 3.2 24 44-67 7-30 (207)
343 3a00_A Guanylate kinase, GMP k 59.5 6.1 0.00021 34.5 3.4 23 45-67 3-25 (186)
344 2j37_W Signal recognition part 59.5 15 0.00051 37.9 6.7 33 44-76 102-137 (504)
345 2gza_A Type IV secretion syste 59.3 8.7 0.0003 37.8 4.8 39 35-75 169-209 (361)
346 3jvv_A Twitching mobility prot 58.3 7.2 0.00025 38.4 3.9 32 33-65 114-145 (356)
347 1cr0_A DNA primase/helicase; R 58.2 9 0.00031 36.2 4.6 45 33-77 24-73 (296)
348 3fkq_A NTRC-like two-domain pr 58.2 31 0.0011 33.8 8.7 26 50-75 151-179 (373)
349 1m7g_A Adenylylsulfate kinase; 57.8 9.4 0.00032 34.0 4.4 24 44-67 26-49 (211)
350 1vht_A Dephospho-COA kinase; s 57.6 7.2 0.00025 34.9 3.6 23 45-68 6-28 (218)
351 1lvg_A Guanylate kinase, GMP k 57.6 6 0.00021 35.1 3.0 23 44-66 5-27 (198)
352 3tr0_A Guanylate kinase, GMP k 57.5 6.2 0.00021 34.8 3.1 23 45-67 9-31 (205)
353 2wwf_A Thymidilate kinase, put 57.4 6.4 0.00022 34.9 3.2 24 44-67 11-34 (212)
354 2h92_A Cytidylate kinase; ross 56.8 8.7 0.0003 34.3 4.0 25 45-69 5-29 (219)
355 3cio_A ETK, tyrosine-protein k 56.6 15 0.00051 35.0 5.8 31 45-75 106-140 (299)
356 1rz3_A Hypothetical protein rb 56.4 10 0.00034 33.6 4.3 30 45-74 24-56 (201)
357 1q3t_A Cytidylate kinase; nucl 56.4 8.1 0.00028 35.2 3.8 25 44-68 17-41 (236)
358 3r20_A Cytidylate kinase; stru 56.3 7.4 0.00025 35.8 3.4 24 45-68 11-34 (233)
359 1nn5_A Similar to deoxythymidy 55.9 7.2 0.00025 34.6 3.3 24 44-67 10-33 (215)
360 3nwn_A Kinesin-like protein KI 55.8 8.5 0.00029 37.9 4.0 18 45-62 106-124 (359)
361 4e22_A Cytidylate kinase; P-lo 55.3 9 0.00031 35.4 3.9 25 45-69 29-53 (252)
362 3vkg_A Dynein heavy chain, cyt 55.1 13 0.00043 47.1 6.1 57 31-89 1294-1352(3245)
363 2ehv_A Hypothetical protein PH 55.0 13 0.00044 33.7 5.0 35 44-78 31-69 (251)
364 2woj_A ATPase GET3; tail-ancho 55.0 12 0.0004 36.7 4.9 42 35-76 10-56 (354)
365 3io3_A DEHA2D07832P; chaperone 54.9 12 0.00041 36.6 4.9 44 34-77 9-57 (348)
366 2v3c_C SRP54, signal recogniti 54.9 6.5 0.00022 39.8 3.0 32 44-75 100-134 (432)
367 1byi_A Dethiobiotin synthase; 53.8 12 0.00041 33.5 4.4 28 49-76 8-38 (224)
368 3vkg_A Dynein heavy chain, cyt 53.1 17 0.00059 46.0 6.7 54 24-79 584-640 (3245)
369 1uj2_A Uridine-cytidine kinase 52.7 8.5 0.00029 35.5 3.3 25 45-69 24-48 (252)
370 2bbw_A Adenylate kinase 4, AK4 52.3 8.4 0.00029 35.3 3.2 25 44-68 28-52 (246)
371 2v9p_A Replication protein E1; 52.3 6 0.00021 38.0 2.2 32 44-75 127-158 (305)
372 3asz_A Uridine kinase; cytidin 52.2 10 0.00035 33.6 3.7 24 45-68 8-31 (211)
373 2qt1_A Nicotinamide riboside k 52.2 10 0.00035 33.6 3.6 23 45-67 23-45 (207)
374 2ewv_A Twitching motility prot 52.0 7.2 0.00025 38.6 2.8 22 44-65 137-158 (372)
375 3dc4_A Kinesin-like protein NO 51.9 10 0.00036 37.0 3.8 16 45-60 96-112 (344)
376 1ihu_A Arsenical pump-driving 51.8 13 0.00044 39.2 4.9 33 44-76 9-44 (589)
377 3tqf_A HPR(Ser) kinase; transf 51.8 9 0.00031 33.5 3.0 23 44-66 17-39 (181)
378 2oze_A ORF delta'; para, walke 51.5 17 0.00058 34.2 5.3 24 51-74 45-71 (298)
379 3gmt_A Adenylate kinase; ssgci 51.4 10 0.00035 34.8 3.5 26 45-70 10-35 (230)
380 1rj9_A FTSY, signal recognitio 51.3 14 0.00048 35.3 4.7 32 44-75 103-137 (304)
381 1z6g_A Guanylate kinase; struc 51.3 15 0.00052 33.0 4.7 30 44-73 24-53 (218)
382 1svm_A Large T antigen; AAA+ f 51.3 17 0.00056 36.1 5.3 32 42-73 168-199 (377)
383 1v8k_A Kinesin-like protein KI 51.2 11 0.00037 37.8 3.9 16 47-62 159-174 (410)
384 3zq6_A Putative arsenical pump 51.1 14 0.00046 35.7 4.6 32 45-76 16-50 (324)
385 2hf9_A Probable hydrogenase ni 50.7 17 0.00058 32.4 5.0 38 30-67 25-62 (226)
386 2pt7_A CAG-ALFA; ATPase, prote 50.7 10 0.00034 36.8 3.5 42 32-75 162-205 (330)
387 4gp7_A Metallophosphoesterase; 50.5 6.9 0.00024 33.7 2.1 18 45-62 11-28 (171)
388 1ls1_A Signal recognition part 50.4 14 0.00048 35.1 4.5 31 45-75 100-133 (295)
389 2f6r_A COA synthase, bifunctio 50.0 10 0.00035 35.8 3.4 23 45-68 77-99 (281)
390 3bfv_A CAPA1, CAPB2, membrane 50.0 18 0.0006 33.9 5.0 30 46-75 85-118 (271)
391 3e70_C DPA, signal recognition 49.9 22 0.00075 34.4 5.8 32 44-75 130-164 (328)
392 2nr8_A Kinesin-like protein KI 49.7 12 0.00042 36.7 4.0 18 45-62 105-123 (358)
393 1lkx_A Myosin IE heavy chain; 49.6 12 0.00042 40.2 4.2 34 31-64 82-115 (697)
394 2ocp_A DGK, deoxyguanosine kin 49.4 13 0.00044 33.9 3.9 25 45-69 4-28 (241)
395 4etp_A Kinesin-like protein KA 49.4 12 0.0004 37.6 3.8 17 45-61 142-159 (403)
396 3gbj_A KIF13B protein; kinesin 49.4 12 0.00042 36.6 4.0 18 45-62 94-112 (354)
397 3b6u_A Kinesin-like protein KI 49.4 12 0.00042 36.9 4.0 16 47-62 106-121 (372)
398 1bg2_A Kinesin; motor protein, 49.4 12 0.00042 36.2 3.9 16 47-62 82-97 (325)
399 1ypw_A Transitional endoplasmi 49.3 4.8 0.00016 44.4 1.1 30 43-72 511-540 (806)
400 1sq5_A Pantothenate kinase; P- 49.3 25 0.00085 33.5 6.1 23 44-66 81-103 (308)
401 3kta_A Chromosome segregation 49.2 11 0.00039 32.4 3.4 22 45-66 28-49 (182)
402 3b9q_A Chloroplast SRP recepto 49.1 11 0.00038 36.0 3.6 31 45-75 102-135 (302)
403 1t5c_A CENP-E protein, centrom 48.6 13 0.00045 36.4 4.0 16 47-62 82-97 (349)
404 2wsm_A Hydrogenase expression/ 48.4 14 0.00048 32.9 3.9 44 32-75 19-64 (221)
405 4ddu_A Reverse gyrase; topoiso 48.3 41 0.0014 38.3 8.6 90 250-341 104-205 (1104)
406 3ug7_A Arsenical pump-driving 48.1 25 0.00087 34.2 6.0 31 45-75 28-61 (349)
407 2vvg_A Kinesin-2; motor protei 48.0 13 0.00045 36.4 3.9 15 47-61 94-108 (350)
408 2y65_A Kinesin, kinesin heavy 47.9 13 0.00045 36.6 3.9 16 47-62 89-104 (365)
409 1tf7_A KAIC; homohexamer, hexa 47.8 34 0.0012 35.4 7.3 54 33-87 269-327 (525)
410 1x88_A Kinesin-like protein KI 47.8 13 0.00043 36.7 3.7 15 48-62 94-108 (359)
411 4anj_A Unconventional myosin-V 47.6 13 0.00045 42.0 4.2 35 30-64 131-165 (1052)
412 1hyq_A MIND, cell division inh 47.5 17 0.00057 33.5 4.4 29 47-75 7-38 (263)
413 1ry6_A Internal kinesin; kines 47.2 11 0.00037 37.1 3.2 16 47-62 89-104 (360)
414 2h58_A Kinesin-like protein KI 47.1 14 0.00047 35.9 3.8 27 34-62 73-100 (330)
415 1f2t_A RAD50 ABC-ATPase; DNA d 46.9 11 0.00038 31.7 2.8 18 45-62 25-42 (149)
416 2v26_A Myosin VI; calmodulin-b 46.9 14 0.00048 40.4 4.2 34 31-64 128-161 (784)
417 4a14_A Kinesin, kinesin-like p 46.8 14 0.00047 36.1 3.8 15 47-61 88-102 (344)
418 1g3q_A MIND ATPase, cell divis 46.7 15 0.0005 33.2 3.9 28 49-76 9-39 (237)
419 3c8u_A Fructokinase; YP_612366 46.7 10 0.00035 33.8 2.7 23 44-66 23-45 (208)
420 2zfi_A Kinesin-like protein KI 46.6 14 0.00048 36.4 3.9 16 47-62 94-109 (366)
421 3lre_A Kinesin-like protein KI 46.5 12 0.00041 36.7 3.3 16 47-62 110-125 (355)
422 1z6t_A APAF-1, apoptotic prote 46.5 24 0.00081 36.9 5.9 43 23-65 125-169 (591)
423 3f9v_A Minichromosome maintena 46.4 12 0.00041 39.6 3.6 24 45-68 329-352 (595)
424 1yrb_A ATP(GTP)binding protein 46.4 16 0.00055 33.5 4.1 31 45-75 16-48 (262)
425 1w9i_A Myosin II heavy chain; 46.1 15 0.00051 40.0 4.2 33 31-63 160-192 (770)
426 3p32_A Probable GTPase RV1496/ 45.9 36 0.0012 33.1 6.8 35 42-76 78-115 (355)
427 2ph1_A Nucleotide-binding prot 45.7 15 0.00052 33.9 3.9 27 49-75 25-54 (262)
428 2heh_A KIF2C protein; kinesin, 45.6 14 0.00046 36.8 3.6 16 47-62 139-154 (387)
429 2wbe_C Bipolar kinesin KRP-130 45.5 15 0.00051 36.3 3.9 16 47-62 105-120 (373)
430 3u06_A Protein claret segregat 45.5 12 0.00042 37.4 3.3 27 34-62 131-158 (412)
431 3lnc_A Guanylate kinase, GMP k 45.3 8.3 0.00029 34.9 1.9 21 44-64 28-48 (231)
432 1w7j_A Myosin VA; motor protei 45.2 15 0.00053 40.1 4.2 34 31-64 144-177 (795)
433 1ltq_A Polynucleotide kinase; 45.0 16 0.00054 34.5 3.9 23 45-67 4-26 (301)
434 4db1_A Myosin-7; S1DC, cardiac 45.0 16 0.00054 39.9 4.2 35 30-64 158-192 (783)
435 1ye8_A Protein THEP1, hypothet 45.0 12 0.00041 32.6 2.8 23 45-67 2-24 (178)
436 1znw_A Guanylate kinase, GMP k 45.0 13 0.00045 33.0 3.1 24 44-67 21-44 (207)
437 3cob_A Kinesin heavy chain-lik 44.8 13 0.00043 36.8 3.2 13 49-61 86-98 (369)
438 3vr4_A V-type sodium ATPase ca 44.8 24 0.00083 36.9 5.4 59 31-90 220-282 (600)
439 2og2_A Putative signal recogni 44.6 18 0.0006 35.6 4.2 31 45-75 159-192 (359)
440 3q9l_A Septum site-determining 44.3 17 0.00057 33.3 3.9 27 49-75 9-38 (260)
441 1goj_A Kinesin, kinesin heavy 44.2 14 0.00047 36.3 3.3 16 47-62 85-100 (355)
442 2owm_A Nckin3-434, related to 43.8 16 0.00054 37.0 3.8 18 45-62 138-156 (443)
443 3auy_A DNA double-strand break 43.7 11 0.00039 37.0 2.7 17 45-61 27-43 (371)
444 1xjc_A MOBB protein homolog; s 43.6 13 0.00046 32.1 2.9 31 45-75 6-39 (169)
445 1dek_A Deoxynucleoside monopho 43.5 27 0.00092 32.1 5.1 43 46-90 4-46 (241)
446 2obl_A ESCN; ATPase, hydrolase 42.7 18 0.00062 35.3 3.9 38 31-68 59-96 (347)
447 3bfn_A Kinesin-like protein KI 42.5 13 0.00043 37.0 2.8 15 48-62 104-118 (388)
448 2p6n_A ATP-dependent RNA helic 42.5 58 0.002 28.4 7.0 65 53-121 39-112 (191)
449 3tmk_A Thymidylate kinase; pho 42.4 24 0.00084 31.8 4.5 27 44-70 6-32 (216)
450 3oaa_A ATP synthase subunit al 42.1 55 0.0019 33.6 7.4 66 25-91 144-215 (513)
451 3ice_A Transcription terminati 41.6 18 0.00061 36.1 3.6 40 26-65 157-196 (422)
452 3hdt_A Putative kinase; struct 41.5 18 0.00062 32.8 3.5 27 45-71 16-42 (223)
453 1kk8_A Myosin heavy chain, str 41.5 16 0.00055 40.2 3.6 34 31-64 157-190 (837)
454 3t0q_A AGR253WP; kinesin, alph 41.2 13 0.00043 36.5 2.5 17 45-61 87-104 (349)
455 3la6_A Tyrosine-protein kinase 41.0 23 0.00078 33.5 4.3 31 45-75 94-128 (286)
456 3tqc_A Pantothenate kinase; bi 40.9 22 0.00075 34.3 4.2 22 46-67 95-116 (321)
457 4eaq_A DTMP kinase, thymidylat 40.9 16 0.00055 33.2 3.1 25 44-68 27-51 (229)
458 1g8x_A Myosin II heavy chain f 40.9 20 0.00067 40.5 4.3 33 31-63 160-192 (1010)
459 1gtv_A TMK, thymidylate kinase 40.6 8.4 0.00029 34.2 1.1 23 46-68 3-25 (214)
460 1odf_A YGR205W, hypothetical 3 40.6 17 0.00057 34.6 3.2 23 45-67 33-55 (290)
461 2ycu_A Non muscle myosin 2C, a 40.2 20 0.00068 40.4 4.2 34 31-64 134-167 (995)
462 3end_A Light-independent proto 40.1 26 0.00089 33.1 4.6 32 44-75 42-76 (307)
463 3zvl_A Bifunctional polynucleo 39.9 13 0.00044 37.3 2.5 25 44-68 259-283 (416)
464 1nij_A Hypothetical protein YJ 39.6 21 0.00072 34.2 3.8 34 45-78 6-40 (318)
465 1s96_A Guanylate kinase, GMP k 39.5 21 0.00071 32.3 3.6 24 44-67 17-40 (219)
466 3ea0_A ATPase, para family; al 39.5 23 0.0008 31.9 4.0 27 49-75 11-41 (245)
467 3k9g_A PF-32 protein; ssgcid, 39.4 14 0.00048 34.2 2.5 45 30-75 15-62 (267)
468 2dfs_A Myosin-5A; myosin-V, in 38.6 22 0.00074 40.5 4.2 34 31-64 144-177 (1080)
469 4i1u_A Dephospho-COA kinase; s 38.4 21 0.00072 32.1 3.4 24 46-70 12-35 (210)
470 2qe7_A ATP synthase subunit al 38.3 30 0.001 35.5 4.9 65 25-90 144-214 (502)
471 1x6v_B Bifunctional 3'-phospho 37.9 25 0.00085 37.3 4.3 31 44-74 53-86 (630)
472 2r9v_A ATP synthase subunit al 37.8 28 0.00095 35.8 4.5 60 30-90 162-227 (515)
473 2jgn_A DBX, DDX3, ATP-dependen 37.6 1.4E+02 0.0048 25.6 8.7 65 52-120 28-103 (185)
474 2f1r_A Molybdopterin-guanine d 37.6 10 0.00036 32.8 1.2 22 45-66 4-25 (171)
475 2rep_A Kinesin-like protein KI 37.5 14 0.00048 36.6 2.2 18 45-62 117-135 (376)
476 2i3b_A HCR-ntpase, human cance 37.4 20 0.0007 31.5 3.1 20 45-64 3-22 (189)
477 1yks_A Genome polyprotein [con 37.3 46 0.0016 33.5 6.1 54 64-121 173-231 (440)
478 2jeo_A Uridine-cytidine kinase 37.2 18 0.0006 33.1 2.8 24 45-68 27-50 (245)
479 2yhs_A FTSY, cell division pro 36.6 28 0.00094 35.8 4.3 30 45-74 295-327 (503)
480 3kjh_A CO dehydrogenase/acetyl 36.3 18 0.00062 32.7 2.7 28 48-75 5-35 (254)
481 3cwq_A Para family chromosome 36.2 31 0.0011 30.6 4.2 38 47-86 5-47 (209)
482 1wcv_1 SOJ, segregation protei 35.6 18 0.00061 33.3 2.5 26 50-75 14-42 (257)
483 2l8b_A Protein TRAI, DNA helic 35.3 1.4E+02 0.0048 26.1 8.0 119 28-183 37-160 (189)
484 3qks_A DNA double-strand break 35.2 20 0.00067 31.9 2.6 19 45-63 25-43 (203)
485 2vp4_A Deoxynucleoside kinase; 35.0 21 0.00073 32.2 2.9 29 45-74 22-50 (230)
486 1wp9_A ATP-dependent RNA helic 34.9 85 0.0029 30.9 7.8 71 266-342 50-135 (494)
487 3qf7_A RAD50; ABC-ATPase, ATPa 34.9 20 0.00067 35.3 2.8 16 45-60 25-40 (365)
488 2ius_A DNA translocase FTSK; n 34.8 21 0.00073 36.8 3.1 21 44-64 168-188 (512)
489 2afh_E Nitrogenase iron protei 34.6 34 0.0012 32.0 4.4 27 48-74 7-36 (289)
490 2ck3_D ATP synthase subunit be 34.6 33 0.0011 35.0 4.4 62 29-91 139-207 (482)
491 1np6_A Molybdopterin-guanine d 34.5 23 0.00077 30.8 2.8 22 45-66 8-29 (174)
492 2xj4_A MIPZ; replication, cell 34.5 24 0.00082 33.1 3.3 26 50-75 12-40 (286)
493 1cp2_A CP2, nitrogenase iron p 34.2 34 0.0012 31.4 4.3 27 48-74 6-35 (269)
494 2v6i_A RNA helicase; membrane, 33.5 51 0.0018 33.0 5.8 54 64-121 167-225 (431)
495 3gqb_A V-type ATP synthase alp 33.3 24 0.00083 36.7 3.2 45 31-75 209-253 (578)
496 2ck3_A ATP synthase subunit al 33.1 31 0.001 35.5 3.9 40 26-65 145-184 (510)
497 1t5i_A C_terminal domain of A 33.0 1.3E+02 0.0043 25.4 7.6 64 53-120 15-88 (172)
498 3mfy_A V-type ATP synthase alp 32.9 24 0.00083 36.7 3.1 59 31-90 215-277 (588)
499 3l0o_A Transcription terminati 32.8 44 0.0015 33.3 4.8 42 25-66 157-198 (427)
500 1knx_A Probable HPR(Ser) kinas 32.5 23 0.0008 34.0 2.8 22 44-65 148-169 (312)
No 1
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.2e-49 Score=421.14 Aligned_cols=340 Identities=30% Similarity=0.464 Sum_probs=283.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 19 ~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.+++.++|+|||.++++.++.++ ++++++|||+|||++++.++...++++|||||+++|+.||.++|.+| + ..
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~-~---~~ 159 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G---EE 159 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGG-C---GG
T ss_pred cccCCCCcCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhC-C---Cc
Confidence 45567899999999999988764 79999999999999999999888999999999999999999999994 3 35
Q ss_pred -EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEE
Q 010184 99 -ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177 (516)
Q Consensus 99 -v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~L 177 (516)
+..++|+... ..+|+|+||+++... ...+ ...|++||+||||++.++.|..++..+.+.++|+|
T Consensus 160 ~v~~~~g~~~~----~~~Ivv~T~~~l~~~----------~~~~-~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~l 224 (472)
T 2fwr_A 160 YVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGL 224 (472)
T ss_dssp GEEEBSSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEE
T ss_pred ceEEECCCcCC----cCCEEEEEcHHHHHH----------HHHh-cCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEE
Confidence 8888888654 378999999988542 2333 35699999999999999999999999999999999
Q ss_pred eccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhh--------------------
Q 010184 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE-------------------- 237 (516)
Q Consensus 178 TATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~-------------------- 237 (516)
||||.+.++....+..++||..+...+.++ ..+++.+..+..+.++++++....|....
T Consensus 225 SATp~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVGGKVFELFPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF 303 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTCCEEEECCHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS
T ss_pred ecCccCCCCHHHHHHHHhCCeEeecCHHHH-hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhH
Confidence 999999998888899999999999999998 67788888888888888877654332000
Q ss_pred ------------------hhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCceEecCCCH
Q 010184 238 ------------------NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299 (516)
Q Consensus 238 ------------------~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~i~g~~~~ 299 (516)
.......+....+.|...+..++..+ ++.++||||+++..++.+++.|++..+||+++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~ 380 (472)
T 2fwr_A 304 NKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFLIPAITHRTSR 380 (472)
T ss_dssp TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHhCcceeeCCCCH
Confidence 00111223345667888888888664 488999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCc-eeEEE
Q 010184 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEE-YNAFF 378 (516)
Q Consensus 300 ~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~-~~~~~ 378 (516)
.+|.+++++|+++ +++|||+|+++++|+|+|++++||++++++ |+..+.||+||++|.| ++ +.+++
T Consensus 381 ~~R~~~~~~F~~g-~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g-----------~~k~~~~i 447 (472)
T 2fwr_A 381 EEREEILEGFRTG-RFRAIVSSQVLDEGIDVPDANVGVIMSGSG-SAREYIQRLGRILRPS-----------KGKKEAVL 447 (472)
T ss_dssp HHHHTHHHHHHHS-SCSBCBCSSCCCSSSCSCCBSEEEEECCSS-CCHHHHHHHHHSBCCC-----------TTTCCEEE
T ss_pred HHHHHHHHHHhCC-CCCEEEEcCchhcCcccccCcEEEEECCCC-CHHHHHHHHhhccCCC-----------CCCceEEE
Confidence 9999999999997 999999999999999999999999998876 9999999999999999 55 68999
Q ss_pred EEEEcCCchhhhHHHHHHH
Q 010184 379 YSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 379 y~lv~~~t~e~~~~~~r~~ 397 (516)
|.+++.+|.|+.++.+|+.
T Consensus 448 ~~lv~~~t~ee~~~~~r~~ 466 (472)
T 2fwr_A 448 YELISRGTGEVNTARRRKN 466 (472)
T ss_dssp EEEEECSCC----------
T ss_pred EEEEeCCCchHHHHHHHHH
Confidence 9999999999999988874
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-47 Score=428.23 Aligned_cols=357 Identities=17% Similarity=0.236 Sum_probs=275.8
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..+|||||.+++++|... ..+++|||+++||+|||+++++++..+ .+++|||||. .|+.||.++|.+|+ +
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P~-sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVPL-STMPAWLDTFEKWA--P 310 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECCT-TTHHHHHHHHHHHS--T
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEECc-hHHHHHHHHHHHHC--C
Confidence 568999999999987632 223589999999999999999988543 5799999995 57999999999995 5
Q ss_pred CCcEEEEeCCcccc-----------------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 96 DDQICRFTSDSKER-----------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 96 ~~~v~~~~~~~~~~-----------------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
...+.+++|..... .....+|+|+||+++... ...+....|++||+||||+++
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~----------~~~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD----------RAELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT----------HHHHHTSEEEEEEETTGGGGC
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh----------HHHHhcCCcceeehhhhhhhc
Confidence 56788888765421 124578999999999653 345656799999999999997
Q ss_pred ch--hHHHHHhhcccceEEEEeccCCCCccch-hhhHhhhC-------------------------------CccccccH
Q 010184 159 AH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIG-------------------------------PKLYEANW 204 (516)
Q Consensus 159 ~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~~~g-------------------------------p~~~~~~~ 204 (516)
+. ...+.+..+++.++|+|||||.+++-.. ..+..++. |.+++...
T Consensus 381 n~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 381 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp CSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred CchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 54 6667788889999999999998765332 13333333 33333333
Q ss_pred HHHHhCCCcccceeEEEeccCCHHHHHHHHHhhh---h------------------HHH---------------------
Q 010184 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN---S------------------KKK--------------------- 242 (516)
Q Consensus 205 ~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~---~------------------~~~--------------------- 242 (516)
.++. ..+++.....+++++++.....|..... . ..+
T Consensus 461 ~dv~--~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 461 KDVE--KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp GGGT--TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred Hhhh--hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 3322 2477778889999999877655531100 0 000
Q ss_pred ---------HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHH
Q 010184 243 ---------QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQA 308 (516)
Q Consensus 243 ---------~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~ 308 (516)
......+++|+..+..++..+. ..|+|+||||+++.+++.++..| .+..++|+++..+|.+++++
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 0012335789999999998887 78999999999999999999999 46789999999999999999
Q ss_pred HhcCC--CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 309 FKCSR--DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 309 F~~~~--~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
|++++ ...+|++|++|++|||+|.|++||+++++| |+..+.||+||++|+| |.+.+.||.|++.+|
T Consensus 618 F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiG-----------Q~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 618 FNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW-NPQADLQAMARAHRIG-----------QKNHVMVYRLVSKDT 685 (800)
T ss_dssp TSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS-CSHHHHHHHTTTSCSS-----------CCSCEEEEEEEETTS
T ss_pred hhCCCCCceEEEEecccccCCCCccccceEEEecCCC-ChhhHHHHHHHHHhcC-----------CCceEEEEEEecCCC
Confidence 99862 335888999999999999999999999987 9999999999999999 778899999999999
Q ss_pred hhhhHHHHHHHHHHHcCCceEEEe
Q 010184 387 QEMFYSTKRQQFLIDQGYSFKVIT 410 (516)
Q Consensus 387 ~e~~~~~~r~~~l~~~g~~~~vi~ 410 (516)
+|+.+..+..+++ .....++.
T Consensus 686 iEe~i~~~~~~K~---~l~~~vi~ 706 (800)
T 3mwy_W 686 VEEEVLERARKKM---ILEYAIIS 706 (800)
T ss_dssp HHHHHHHHHHHHT---TSCC----
T ss_pred HHHHHHHHHHHHH---HHHHHHHc
Confidence 9998887766655 44555554
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=2.6e-46 Score=398.35 Aligned_cols=347 Identities=20% Similarity=0.254 Sum_probs=259.1
Q ss_pred CCCCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 21 KPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
....+|||||.++++++... ...+++||++|||+|||+++++++... .+++|||||+ .|+.||.++|.+|+
T Consensus 33 ~~~~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~-- 109 (500)
T 1z63_A 33 NIKANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFA-- 109 (500)
T ss_dssp SCSSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHC--
T ss_pred hhhccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHC--
Confidence 34568999999999977531 112489999999999999999887654 2689999995 58999999999995
Q ss_pred CCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHHhhcccc
Q 010184 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSH 172 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~~~~~ 172 (516)
+...+.+++++.........+|+|+||+++.... .+....|++||+||||++.+. ...+.+..+.+.
T Consensus 110 ~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~-----------~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l~~~ 178 (500)
T 1z63_A 110 PHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDT-----------RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSK 178 (500)
T ss_dssp TTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCH-----------HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEE
T ss_pred CCceEEEEecCchhccccCCcEEEeeHHHHhccc-----------hhcCCCcCEEEEeCccccCCHhHHHHHHHHhhccC
Confidence 3557888887764433456789999999996631 144678999999999999876 355667777888
Q ss_pred eEEEEeccCCCCccc-hhhhHhhh----------------------------------CCccccccHHHHHhCCCcccce
Q 010184 173 CKLGLTATLVREDER-ITDLNFLI----------------------------------GPKLYEANWLDLVKGGFIANVQ 217 (516)
Q Consensus 173 ~~l~LTATp~~~~~~-~~~l~~~~----------------------------------gp~~~~~~~~~l~~~g~l~~~~ 217 (516)
++++|||||.+++-. ...+..++ .|..++....+......+++..
T Consensus 179 ~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~ 258 (500)
T 1z63_A 179 YRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKI 258 (500)
T ss_dssp EEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCe
Confidence 999999999886532 11222333 3333332222211123566777
Q ss_pred eEEEeccCCHHHHHHHHHhhhh------------HHHHH---------H------------hhhCcchHHHHHHHHHHHh
Q 010184 218 CAEVWCPMTKEFFSEYLKKENS------------KKKQA---------L------------YVMNPNKFRACEFLIRFHE 264 (516)
Q Consensus 218 ~~~v~~~~~~~~~~~~l~~~~~------------~~~~~---------l------------~~~~~~k~~~~~~ll~~~~ 264 (516)
...+++++++.....|...... ..... + ....+.|+..+..++....
T Consensus 259 ~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~ 338 (500)
T 1z63_A 259 ETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEAL 338 (500)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHH
Confidence 7889999998776655311000 00000 0 0123568888888887765
Q ss_pred hcCCCeEEEEeccHHHHHHHHHHh------CCceEecCCCHHHHHHHHHHHhcCCCcc-EEEEeCCCcccccccccCEEE
Q 010184 265 QQRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIPEANVII 337 (516)
Q Consensus 265 ~~~~~k~iVF~~~~~~~~~l~~~L------~~~~i~g~~~~~eR~~~l~~F~~~~~~~-vLv~t~~~~~GlDlp~a~~vI 337 (516)
..++|+||||+++..++.++..| ++..+||+++..+|.+++++|++++..+ +|++|+++++|+|+|.+++||
T Consensus 339 -~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi 417 (500)
T 1z63_A 339 -DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVI 417 (500)
T ss_dssp -TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEE
T ss_pred -ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEE
Confidence 67899999999999999988877 3568999999999999999999985565 678899999999999999999
Q ss_pred EecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHH
Q 010184 338 QISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (516)
Q Consensus 338 ~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (516)
+++++| |+..+.||+||++|.| |.+.+.+|.+++.+|+|+.+...
T Consensus 418 ~~d~~~-~~~~~~Q~~gR~~R~G-----------q~~~v~v~~lv~~~tiee~i~~~ 462 (500)
T 1z63_A 418 HFDRWW-NPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQL 462 (500)
T ss_dssp ESSCCS-CC---CHHHHTTTTTT-----------TTSCEEEEEEEETTSHHHHTHHH
T ss_pred EeCCCC-CcchHHHHHHHHHHcC-----------CCCeeEEEEEEeCCCHHHHHHHH
Confidence 998887 9999999999999999 77789999999999999866544
No 4
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=9.2e-45 Score=396.35 Aligned_cols=351 Identities=17% Similarity=0.229 Sum_probs=259.7
Q ss_pred CCCCCHHHHHHHHHHHhC------CCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHH
Q 010184 23 HAQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~------~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~ 86 (516)
...|||||.+|+++++.. ...++|||+++||+|||+++++++... .+++|||||+ .|+.||.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 468999999999998641 223578999999999999999988553 2469999997 58999999
Q ss_pred HHHHhhCCCCCcEEEEeCCcccc-------c------cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEcc
Q 010184 87 QFKLWSTIQDDQICRFTSDSKER-------F------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 153 (516)
Q Consensus 87 e~~~~~~~~~~~v~~~~~~~~~~-------~------~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDE 153 (516)
+|.+|++. ...+..+.++.+.. + ....+|+|+||+++... ...+....|++||+||
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----------~~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH----------AEVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH----------TTTTTTSCCCEEEETT
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh----------HHHhhcCCccEEEEEC
Confidence 99999754 23344444443211 0 12478999999998643 2345567899999999
Q ss_pred CccCCch--hHHHHHhhcccceEEEEeccCCCCccch-hhhHhhhCCc--------------------------------
Q 010184 154 VHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPK-------------------------------- 198 (516)
Q Consensus 154 aH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~~~gp~-------------------------------- 198 (516)
||+++++ ...+.+..+.+.++|+|||||.+++-.. ..+..++.|.
T Consensus 201 aH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp GGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred ceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 9999875 4445666778999999999999876331 1222222221
Q ss_pred --------------cccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHh---hhh------------------HHHH
Q 010184 199 --------------LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKK---ENS------------------KKKQ 243 (516)
Q Consensus 199 --------------~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~---~~~------------------~~~~ 243 (516)
+++....++ ...+++.....++|++++.+...|..- ... ..+.
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v--~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDIL--SKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGG--GGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhH--hhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 111111111 124667778889999998765544311 000 0000
Q ss_pred ------HHh---------------------------hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh--
Q 010184 244 ------ALY---------------------------VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-- 288 (516)
Q Consensus 244 ------~l~---------------------------~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-- 288 (516)
++. ...++|+..+..++.......++|+||||+++.+++.++..|
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 000 012568888888887765356899999999999999999988
Q ss_pred ---CCceEecCCCHHHHHHHHHHHhcCCC--ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCc
Q 010184 289 ---RKPMIYGATSHVERTKILQAFKCSRD--LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363 (516)
Q Consensus 289 ---~~~~i~g~~~~~eR~~~l~~F~~~~~--~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~ 363 (516)
.+..+||+++..+|.+++++|++++. ..+|++|+++++|+|+|.|++||++++|| |+..+.|++||++|+|
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~w-np~~~~Qa~gR~~R~G--- 514 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDEQAMARVWRDG--- 514 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS-SHHHHHHHHTTSSSTT---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCC-CccHHHHHHHhhhhcC---
Confidence 35579999999999999999999732 24788899999999999999999999887 9999999999999999
Q ss_pred cccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHH
Q 010184 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (516)
Q Consensus 364 ~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (516)
|.+.+++|.+++.+|+|+.+......+.
T Consensus 515 --------q~~~v~v~~lv~~~tiEe~i~~~~~~K~ 542 (644)
T 1z3i_X 515 --------QKKTCYIYRLLSTGTIEEKILQRQAHKK 542 (644)
T ss_dssp --------CCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred --------CCCceEEEEEEECCCHHHHHHHHHHHHH
Confidence 7778999999999999998876655544
No 5
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=1.3e-42 Score=370.76 Aligned_cols=359 Identities=17% Similarity=0.213 Sum_probs=267.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.++|+|||.+|++.++.+. ++++++|||+|||++++.++.. .++++|||||+++|+.||.++|.+|...+...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp EECCCHHHHHHHHHHHHHS---EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCCHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 4589999999999998764 8999999999999999887754 23599999999999999999999997666667
Q ss_pred EEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-ccceEE
Q 010184 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKL 175 (516)
Q Consensus 99 v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~-~~~~~l 175 (516)
+..++++.... ..+..+|+|+||+.+..... .. ...+++||+||||++.++.+..++..+ ...++|
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~---------~~--~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EW--FSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCG---------GG--GGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhchh---------hh--hhcCCEEEEECCcCCCcccHHHHHHhcccCcEEE
Confidence 88887765432 22568999999998865321 11 257899999999999999898888877 567899
Q ss_pred EEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHH
Q 010184 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (516)
Q Consensus 176 ~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~ 255 (516)
+|||||.+.......+..++++..+.....++.+.|++.++.+..+.+.++........ ................+...
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK-GKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHT-TCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc-ccchHHHHHHHhccHHHHHH
Confidence 99999977666656677789999999999999999999999988888888766542110 00001111122223345555
Q ss_pred HHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEe-CCCccccc
Q 010184 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSID 329 (516)
Q Consensus 256 ~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t-~~~~~GlD 329 (516)
+..++.......+.++|||++ +..++.+++.|. +.++||+++..+|.++++.|+++ +.+|||+| +++++|+|
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-KGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC-CSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEcChhhcccc
Confidence 555554443244666777777 888999999993 46899999999999999999997 99999999 99999999
Q ss_pred ccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchh----------------hhHHH
Q 010184 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE----------------MFYST 393 (516)
Q Consensus 330 lp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e----------------~~~~~ 393 (516)
+|++++||++++++ |+..+.|++||+||.|+ .+..+.+|++++..+.. .....
T Consensus 414 ip~v~~vi~~~~~~-s~~~~~Q~~GR~gR~g~----------~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (510)
T 2oca_A 414 VKNLHHVVLAHGVK-SKIIVLQTIGRVLRKHG----------SKTIATVWDLIDDAGVKPKSANTKKKYVHLNYLLKHGI 482 (510)
T ss_dssp CCSEEEEEESSCCC-SCCHHHHHHHHHHTTTC----------CCCCCEEEEEEEECCBCCSSSSCSCSCSBCCHHHHHHH
T ss_pred cccCcEEEEeCCCC-CHHHHHHHHhcccccCC----------CCceEEEEEeecchhhhhhhhhhhhhhhhhhHHHHHHH
Confidence 99999999998875 99999999999999995 23378999988865411 12234
Q ss_pred HHHHHHHHcCCceEEE
Q 010184 394 KRQQFLIDQGYSFKVI 409 (516)
Q Consensus 394 ~r~~~l~~~g~~~~vi 409 (516)
.|...+.+.++.+.+.
T Consensus 483 ~r~~~~~~e~~~~~~~ 498 (510)
T 2oca_A 483 DRIQRYADEKFNYVMK 498 (510)
T ss_dssp HHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcCceEEEe
Confidence 4555566666666444
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.4e-42 Score=362.98 Aligned_cols=344 Identities=23% Similarity=0.266 Sum_probs=242.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.++|||||.+++.+++.+ ++++++|||+|||++++.++... ++++|||||+++|+.||.++|.+|++.+...
T Consensus 7 ~~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 468999999999988775 79999999999999999887554 6899999999999999999999998877778
Q ss_pred EEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHHHHHhh----c
Q 010184 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISL----T 169 (516)
Q Consensus 99 v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~~~l~~----~ 169 (516)
+..++|+.... .....+|+|+||+.+.....+ ..+....|++||+||||++.+. .+..++.. .
T Consensus 83 v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp EEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred eEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 99998876432 123578999999999653211 1233478999999999999864 44433332 3
Q ss_pred ccceEEEEeccCCCCccchhhhHhhhCCcccccc-HHHHHhCCCcccceeEEEeccCCHHHHH-----------------
Q 010184 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEAN-WLDLVKGGFIANVQCAEVWCPMTKEFFS----------------- 231 (516)
Q Consensus 170 ~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~-~~~l~~~g~l~~~~~~~v~~~~~~~~~~----------------- 231 (516)
+..++++|||||.++......+...++....... ..+..-..++.+.........++.....
T Consensus 155 ~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (494)
T 1wp9_A 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLA 234 (494)
T ss_dssp SSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999554444444444442211100 0000000112222222222223222110
Q ss_pred ----------------------------------------------------------------HHHHhh----------
Q 010184 232 ----------------------------------------------------------------EYLKKE---------- 237 (516)
Q Consensus 232 ----------------------------------------------------------------~~l~~~---------- 237 (516)
.|+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (494)
T 1wp9_A 235 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTK 314 (494)
T ss_dssp HHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccch
Confidence 000000
Q ss_pred -------hhHHHH--------HHhhhCcchHHHHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHhC-----CceEec-
Q 010184 238 -------NSKKKQ--------ALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYG- 295 (516)
Q Consensus 238 -------~~~~~~--------~l~~~~~~k~~~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g- 295 (516)
...... ......+.|+..+..++..+. ...+.|+||||+++..++.+++.|. +..+||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 315 ASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 000000 000134557777777775532 1468899999999999999999993 457999
Q ss_pred -------CCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCcccccc
Q 010184 296 -------ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (516)
Q Consensus 296 -------~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~ 368 (516)
+++..+|.+++++|+++ +.+|||+|+++++|+|+|++++||+++++| |+..+.||+||++|.|
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~-~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~-~~~~~~Qr~GR~~R~g-------- 464 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARG-EFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHM-------- 464 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHT-SCSEEEECGGGGGGGGSTTCCEEEESSCCH-HHHHHHHHHTTSCSCC--------
T ss_pred ccccccccCCHHHHHHHHHHHhcC-CceEEEECCccccCCCchhCCEEEEeCCCC-CHHHHHHHHhhccCCC--------
Confidence 89999999999999998 899999999999999999999999998876 9999999999999999
Q ss_pred CCCCceeEEEEEEEcCCchhhhHHHH
Q 010184 369 GGKEEYNAFFYSLVSTDTQEMFYSTK 394 (516)
Q Consensus 369 ~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (516)
+ +.+|.+++.+|.|+.+...
T Consensus 465 ---~---g~~~~l~~~~t~ee~~~~~ 484 (494)
T 1wp9_A 465 ---P---GRVIILMAKGTRDEAYYWS 484 (494)
T ss_dssp ---C---SEEEEEEETTSHHHHHHHH
T ss_pred ---C---ceEEEEEecCCHHHHHHHH
Confidence 4 5678899999999976544
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.2e-39 Score=366.35 Aligned_cols=350 Identities=14% Similarity=0.123 Sum_probs=250.1
Q ss_pred CCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
...++|+|||.+++.+++... ..+++|+++||+|||++++.++... .+++|||||+ .|+.||..+|.+|++.
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l- 225 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH-APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNL- 225 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS-SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCC-
T ss_pred CCCCCCcHHHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCC-
Confidence 456899999999999988753 3578999999999999999888543 2589999999 8999999999998754
Q ss_pred CCcEEEEeCCccc-------cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh-----HH
Q 010184 96 DDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-----FR 163 (516)
Q Consensus 96 ~~~v~~~~~~~~~-------~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~-----~~ 163 (516)
.+.+++++... ......+|+|+||+++.....+ ...+....|++||+||||++.+.. ..
T Consensus 226 --~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~ 296 (968)
T 3dmq_A 226 --RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREY 296 (968)
T ss_dssp --CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-------THHHHTSCCCEEEECCSSCCCCBTTBCCHHH
T ss_pred --CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-------HHHhhhcCCCEEEehhhHhhcCCCCcchHHH
Confidence 45666654321 1123578999999999764332 233446789999999999998642 13
Q ss_pred HHHhhc--ccceEEEEeccCCCCccc-hhhhHhhhCCccccccH------------HHHH--------------------
Q 010184 164 KVISLT--KSHCKLGLTATLVREDER-ITDLNFLIGPKLYEANW------------LDLV-------------------- 208 (516)
Q Consensus 164 ~~l~~~--~~~~~l~LTATp~~~~~~-~~~l~~~~gp~~~~~~~------------~~l~-------------------- 208 (516)
+.+..+ ...++|+|||||.+++.. ...+..++.|..+.... .+..
T Consensus 297 ~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~ 376 (968)
T 3dmq_A 297 QAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEM 376 (968)
T ss_dssp HHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTT
T ss_pred HHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 344444 566799999999875532 22333344443321110 0000
Q ss_pred --------------------------------h------------C---CCcccceeEEEeccCCHHHHHHHHHhhhh--
Q 010184 209 --------------------------------K------------G---GFIANVQCAEVWCPMTKEFFSEYLKKENS-- 239 (516)
Q Consensus 209 --------------------------------~------------~---g~l~~~~~~~v~~~~~~~~~~~~l~~~~~-- 239 (516)
. . +-........+.+++++.....|......
T Consensus 377 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (968)
T 3dmq_A 377 IGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGA 456 (968)
T ss_dssp TCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTC
T ss_pred hcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhh
Confidence 0 0 00111123344556666554443310000
Q ss_pred ------HHHHH---------------HhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC------Cce
Q 010184 240 ------KKKQA---------------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPM 292 (516)
Q Consensus 240 ------~~~~~---------------l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------~~~ 292 (516)
..... .......|...+..++.. .++.|+||||+++..++.++..|. +..
T Consensus 457 ~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 457 RKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp CSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 00000 112334577777777765 358899999999999999999884 357
Q ss_pred EecCCCHHHHHHHHHHHhcCC-CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCC
Q 010184 293 IYGATSHVERTKILQAFKCSR-DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371 (516)
Q Consensus 293 i~g~~~~~eR~~~l~~F~~~~-~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~ 371 (516)
+||++++.+|.++++.|++++ .++|||+|+++++|+|+|.+++||+++++| |+..|.|++||++|.|
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~-~~~~~~Q~~GR~~R~G----------- 601 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF-NPDLLEQRIGRLDRIG----------- 601 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS-SHHHHHHHHHTTSCSS-----------
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC-CHHHHHHHhhccccCC-----------
Confidence 999999999999999999982 399999999999999999999999998886 9999999999999999
Q ss_pred CceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 372 EEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 372 ~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
+.+.+.+|.++..++.++.+.+..+.
T Consensus 602 q~~~v~v~~~~~~~t~ee~i~~~~~~ 627 (968)
T 3dmq_A 602 QAHDIQIHVPYLEKTAQSVLVRWYHE 627 (968)
T ss_dssp SCSCCEEEEEEETTSHHHHHHHHHHH
T ss_pred CCceEEEEEecCCChHHHHHHHHHHh
Confidence 66679999999999999877655433
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=3.4e-39 Score=346.97 Aligned_cols=340 Identities=18% Similarity=0.198 Sum_probs=215.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--------CCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
.++|||||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++..
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHhCCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4689999999999988664 89999999999999999887543 678999999999999999999999765
Q ss_pred CCCcEEEEeCCccccc-----cCCCcEEEEchhhhhccCCCChhHHHHHHHH-ccCCccEEEEccCccCCch-hHHHHHh
Q 010184 95 QDDQICRFTSDSKERF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~~-----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l~ 167 (516)
.+..+..++|+..... ....+|+|+||+++.....+. .+ ....|++||+||||++.+. .+..++.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG--------AIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS--------SSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC--------cccccccCCEEEEECccccCCcchHHHHHH
Confidence 5667888888864321 234789999999986532211 01 1256899999999999875 4444332
Q ss_pred hc----------ccceEEEEeccCCCCccc--------hhhhHhhhCCc-ccc--ccHHHHHhCCCcccceeEEEecc--
Q 010184 168 LT----------KSHCKLGLTATLVREDER--------ITDLNFLIGPK-LYE--ANWLDLVKGGFIANVQCAEVWCP-- 224 (516)
Q Consensus 168 ~~----------~~~~~l~LTATp~~~~~~--------~~~l~~~~gp~-~~~--~~~~~l~~~g~l~~~~~~~v~~~-- 224 (516)
.+ ...++++|||||.+.+.. ...+...++.. +.. ....++. .+........+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE--QVVYKPQKISRKVASR 228 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH--TTCCCCCEEEEECCCC
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH--hhcCCCceEEEEecCc
Confidence 22 224799999999876522 22333444422 211 1223333 23333332222222
Q ss_pred CCHHHHH-------------------------------------HHHHhhhh----------------------------
Q 010184 225 MTKEFFS-------------------------------------EYLKKENS---------------------------- 239 (516)
Q Consensus 225 ~~~~~~~-------------------------------------~~l~~~~~---------------------------- 239 (516)
....+.. .+......
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 1111100 01000000
Q ss_pred -----------------------------------HHHH----------------HHhhhCcchHHHHHHHHHHH-hhcC
Q 010184 240 -----------------------------------KKKQ----------------ALYVMNPNKFRACEFLIRFH-EQQR 267 (516)
Q Consensus 240 -----------------------------------~~~~----------------~l~~~~~~k~~~~~~ll~~~-~~~~ 267 (516)
..+. ........|...+..++... ...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0000 00001245777777777443 2245
Q ss_pred CCeEEEEeccHHHHHHHHHHhC-----------------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccc
Q 010184 268 GDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (516)
Q Consensus 268 ~~k~iVF~~~~~~~~~l~~~L~-----------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDl 330 (516)
+.++||||+++..++.++..|. ...+||++++.+|.+++++|++++.++|||||+++++|||+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDl 468 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDI 468 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEET
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcc
Confidence 7899999999999999999882 22456799999999999999993399999999999999999
Q ss_pred cccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 331 p~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
|++++||+++++| |+..|+||+|| ||.. .+.+|.+++.++.++..
T Consensus 469 p~v~~VI~~d~p~-s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~~ 513 (555)
T 3tbk_A 469 AECNLVILYEYVG-NVIKMIQTRGR-GRAR--------------DSKCFLLTSSADVIEKE 513 (555)
T ss_dssp TSCSEEEEESCCS-SCCCEECSSCC-CTTT--------------SCEEEEEESCHHHHHHH
T ss_pred ccCCEEEEeCCCC-CHHHHHHhcCc-CcCC--------------CceEEEEEcCCCHHHHH
Confidence 9999999998886 99999999999 7764 45677888888887643
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=6.6e-39 Score=345.08 Aligned_cols=341 Identities=16% Similarity=0.197 Sum_probs=190.4
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--------CCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
+.++|||||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 45789999999999998764 89999999999999998887543 67899999999999999999999976
Q ss_pred CCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHH-ccCCccEEEEccCccCCch-hHHHHH
Q 010184 94 IQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVI 166 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l 166 (516)
..+..+..++|+.... +....+|+|+||+.+.....+. .+ ....|++||+||||++.+. .+..++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~ 152 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLM 152 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSS--------SCCCSTTCSEEEEETGGGCSTTSHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhC--------cccccccCCEEEEECCcccCCcchHHHHH
Confidence 5566788888876322 1235789999999986532211 11 2357899999999999865 233332
Q ss_pred hhc---------ccceEEEEeccCCCCccc--------hhhhHhhhCCcccc---ccHHHHHhCCCcccceeEEEecc--
Q 010184 167 SLT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPKLYE---ANWLDLVKGGFIANVQCAEVWCP-- 224 (516)
Q Consensus 167 ~~~---------~~~~~l~LTATp~~~~~~--------~~~l~~~~gp~~~~---~~~~~l~~~g~l~~~~~~~v~~~-- 224 (516)
..+ +..++|+|||||...+.. +..+...++..... ....++.. ++.......+...
T Consensus 153 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 153 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVKRR 230 (556)
T ss_dssp HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH--HTCCCCEEEEECCCC
T ss_pred HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHh--cCCCCceEEEEcCCC
Confidence 211 235799999999765422 11222333322111 11222221 2222111111111
Q ss_pred CCHHH------------------------------------HHHHHHhhhh-----------------------------
Q 010184 225 MTKEF------------------------------------FSEYLKKENS----------------------------- 239 (516)
Q Consensus 225 ~~~~~------------------------------------~~~~l~~~~~----------------------------- 239 (516)
....+ |..+......
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 310 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 11100 0000000000
Q ss_pred ----------------------------------HHHHHH------------h----hhCcchHHHHHHHHHH-HhhcCC
Q 010184 240 ----------------------------------KKKQAL------------Y----VMNPNKFRACEFLIRF-HEQQRG 268 (516)
Q Consensus 240 ----------------------------------~~~~~l------------~----~~~~~k~~~~~~ll~~-~~~~~~ 268 (516)
...... . .....|...+..++.. ....++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~ 390 (556)
T 4a2p_A 311 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 390 (556)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCC
Confidence 000000 0 0124577777777643 222567
Q ss_pred CeEEEEeccHHHHHHHHHHhCC-----------------ceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccccc
Q 010184 269 DKIIVFADNLFALTEYAMKLRK-----------------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331 (516)
Q Consensus 269 ~k~iVF~~~~~~~~~l~~~L~~-----------------~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp 331 (516)
.|+||||+++..++.++..|.. ..+||++++.+|.+++++|++++.++|||||+++++|||+|
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 8999999999999999999842 23577899999999999999933999999999999999999
Q ss_pred ccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 332 ~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
++++||++++++ |+..|+||+|| ||.. .+.+|.+++.++.++.+
T Consensus 471 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~~ 514 (556)
T 4a2p_A 471 QCNLVVLYEYSG-NVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENE 514 (556)
T ss_dssp --CEEEEETCCS-CHHHHHHC-----------------------CCEEEEESCHHHHHHH
T ss_pred hCCEEEEeCCCC-CHHHHHHhcCC-CCCC--------------CceEEEEEeCcchHHHH
Confidence 999999998886 99999999999 8875 34577889988887643
No 10
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.6e-39 Score=350.09 Aligned_cols=336 Identities=18% Similarity=0.242 Sum_probs=221.9
Q ss_pred CCCCCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHh------------cCCCEEEEEeChhhHHHHH-
Q 010184 21 KPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWA- 85 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~------------~~~~~Lvl~P~~~L~~Qw~- 85 (516)
.....|||||.+|+++++.. ...+++++++|||+|||++++.++.. ..+++|||||+++|+.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 34578999999999988762 11247899999999999999887744 3478999999999999999
Q ss_pred HHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc---hhH
Q 010184 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMF 162 (516)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~---~~~ 162 (516)
+.|..|.. .+..+.+.. .....+|+|+||+.+....... .....+....|++||+||||++.+ ..+
T Consensus 254 ~~~~~~~~----~~~~~~~~~---~~~~~~I~v~T~~~l~~~~~~~----~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGGK---VVKSREIYFAIYQSIASDERRP----GLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp -CCTTTCS----SEEECCC-----CCSSCSEEEEEGGGC------C----CGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHHHhcch----hhhhhhccC---CCCCCcEEEEEhhhhccccccc----cccccCCCCccCEEEEECCccccccchHHH
Confidence 88887632 344444432 2346789999999997642211 012334446789999999999986 478
Q ss_pred HHHHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHH-------HH
Q 010184 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY-------LK 235 (516)
Q Consensus 163 ~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~-------l~ 235 (516)
+.++..++..++|+|||||.+.+.. .+..++|+.++.+...+.+..|++.++....+........+... ..
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~--~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNR--DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTH--HHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHhCCcceEEEeccccccccch--hHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 8899988888899999999987654 46678899999999999999999999888777665432111100 00
Q ss_pred -------hhhhHHHHHHhhhCcchHH-HHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHhC-------------CceE
Q 010184 236 -------KENSKKKQALYVMNPNKFR-ACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-------------KPMI 293 (516)
Q Consensus 236 -------~~~~~~~~~l~~~~~~k~~-~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L~-------------~~~i 293 (516)
......+ .+. .+.+.. ++..+..... ..++.|+||||+++.+++.++..|. +..+
T Consensus 401 ~~~~~~~~~~~~~~-~~~--~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 401 EIPDGEYQTKDFER-VIA--LKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp --------CCSHHH-HHH--HHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred ccccccCCHHHhhh-Hhc--ChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 0000000 000 111112 2233322221 1456899999999999999999883 3357
Q ss_pred ecCCCHHHHHHHHHHHhcCCCcc---EEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCC
Q 010184 294 YGATSHVERTKILQAFKCSRDLN---TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370 (516)
Q Consensus 294 ~g~~~~~eR~~~l~~F~~~~~~~---vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~ 370 (516)
||+++. +|.+++++|+++ +.+ +|++|+++++|||+|.+++||++++++ |+..|.||+||++|.++..
T Consensus 478 ~g~~~~-~r~~~l~~F~~~-~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~-s~~~~~Q~iGR~~R~~~~~------- 547 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQEL-ETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN-SMSEFKQIVGRGTRLREDY------- 547 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCT-TCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC-CHHHHHHHHTTSCCCBGGG-------
T ss_pred eCCChH-HHHHHHHHHhCC-CCCCCEEEEECChhhcCccchheeEEEEEecCC-ChHHHHHHHhhhcccCccC-------
Confidence 888764 799999999997 433 777889999999999999999997765 9999999999999998510
Q ss_pred CCceeEEEEEEEc
Q 010184 371 KEEYNAFFYSLVS 383 (516)
Q Consensus 371 ~~~~~~~~y~lv~ 383 (516)
.+...++|+++.
T Consensus 548 -~k~~~~I~D~~g 559 (590)
T 3h1t_A 548 -GKLWFNIIDYTG 559 (590)
T ss_dssp -TBSCEEEEECSS
T ss_pred -CCCEEEEEecCC
Confidence 123567777763
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.5e-38 Score=354.42 Aligned_cols=340 Identities=16% Similarity=0.195 Sum_probs=199.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--------CCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
..+|||||.++++.++.+. ++++++|||+|||++++.++... ++++|||||+++|+.||.++|.+|+..
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp --CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHhCC---CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 5789999999999988764 89999999999999999887554 678999999999999999999999765
Q ss_pred CCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHH-ccCCccEEEEccCccCCch-hHHHHHh
Q 010184 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l~ 167 (516)
.+..+..++|+.... +....+|+|+||+++.....+. .+ ....|++||+||||++.+. .+..++.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--------cccccccCCEEEEECccccCCCccHHHHHH
Confidence 566888888876432 2246899999999986532211 11 1245799999999999875 3444332
Q ss_pred hc---------ccceEEEEeccCCCCccc--------hhhhHhhhCCccccc---cHHHHHhCCCcccceeEEEecc--C
Q 010184 168 LT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPKLYEA---NWLDLVKGGFIANVQCAEVWCP--M 225 (516)
Q Consensus 168 ~~---------~~~~~l~LTATp~~~~~~--------~~~l~~~~gp~~~~~---~~~~l~~~g~l~~~~~~~v~~~--~ 225 (516)
.+ +..++|+|||||.+.+.. +..+...+++..... ....+.. ++.......+.++ .
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH--HSCCCCCEEEECCCCS
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHH--hcCCCceEEEecCCCC
Confidence 22 225799999999865421 223333444322211 1122221 2222222222222 1
Q ss_pred CHH------------------------------------HHHHHHHhhhhH----------------------H------
Q 010184 226 TKE------------------------------------FFSEYLKKENSK----------------------K------ 241 (516)
Q Consensus 226 ~~~------------------------------------~~~~~l~~~~~~----------------------~------ 241 (516)
... .+..++...... .
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 100 001011000000 0
Q ss_pred -------------------HH----------------H-----------H-----hhhCcchHHHHHHHHHH-HhhcCCC
Q 010184 242 -------------------KQ----------------A-----------L-----YVMNPNKFRACEFLIRF-HEQQRGD 269 (516)
Q Consensus 242 -------------------~~----------------~-----------l-----~~~~~~k~~~~~~ll~~-~~~~~~~ 269 (516)
.. . . ......|+..+..++.. ....++.
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 00 0 0 00134577777777753 2226679
Q ss_pred eEEEEeccHHHHHHHHHHhC-----------------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccc
Q 010184 270 KIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (516)
Q Consensus 270 k~iVF~~~~~~~~~l~~~L~-----------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~ 332 (516)
|+||||+++..++.++..|. ...+||++++.+|.+++++|++++.++|||||+++++|||+|+
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~ 712 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CC
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchh
Confidence 99999999999999999982 2346888999999999999999339999999999999999999
Q ss_pred cCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 333 a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
+++||++++++ |+..|+||+|| ||.. .+.+|.+++.++.++.+
T Consensus 713 v~~VI~yd~p~-s~~~~iQr~GR-GR~~--------------~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 713 CNLVVLYEYSG-NVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENE 755 (797)
T ss_dssp CSEEEEESCCS-CHHHHHTC----------------------CCCEEEEECCHHHHHHH
T ss_pred CCEEEEeCCCC-CHHHHHHhcCC-CCCC--------------CceEEEEEeCCcHHHHH
Confidence 99999998886 99999999999 8875 34567888988887753
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4e-37 Score=317.76 Aligned_cols=290 Identities=17% Similarity=0.150 Sum_probs=212.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++....+..
T Consensus 43 ~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 119 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS 119 (400)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 59999999999998764 89999999999999988776442 3589999999999999999999987655667
Q ss_pred EEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc----
Q 010184 99 ICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT---- 169 (516)
Q Consensus 99 v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~---- 169 (516)
+..+.|+.... .....+|+|+||+.+.....+ .......+++||+||||++.+..|...+..+
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 120 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--------KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred EEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 77777765421 235689999999988543211 1122356899999999999887666555433
Q ss_pred -ccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 170 -KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
...+.++||||+...... .+...++ |...... ..............+
T Consensus 192 ~~~~~~i~lSAT~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~------------------------ 240 (400)
T 1s2m_A 192 PPTHQSLLFSATFPLTVKE--FMVKHLHKPYEINLM-----EELTLKGITQYYAFV------------------------ 240 (400)
T ss_dssp CSSCEEEEEESCCCHHHHH--HHHHHCSSCEEESCC-----SSCBCTTEEEEEEEC------------------------
T ss_pred CcCceEEEEEecCCHHHHH--HHHHHcCCCeEEEec-----cccccCCceeEEEEe------------------------
Confidence 245789999998642211 1222222 1111000 000011111111111
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
....|...+..++... .+.++||||+++..++.+++.| ++..+||+++..+|.++++.|+++ +.+|||+|+
T Consensus 241 ~~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~ 316 (400)
T 1s2m_A 241 EERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLVCSD 316 (400)
T ss_dssp CGGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEESS
T ss_pred chhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcC
Confidence 1123444555555543 4679999999999999999998 356799999999999999999997 999999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~ 354 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPK-TAETYLHRIGRSGRFGH 354 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCS-SHHHHHHHHCBSSCTTC
T ss_pred ccccCCCccCCCEEEEeCCCC-CHHHHHHhcchhcCCCC
Confidence 999999999999999998775 99999999999999983
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.4e-37 Score=319.99 Aligned_cols=292 Identities=15% Similarity=0.118 Sum_probs=211.1
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC-CC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~~ 97 (516)
+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||+||+++|+.||.+++.++.... ..
T Consensus 30 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 106 (391)
T 1xti_A 30 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106 (391)
T ss_dssp SCCHHHHHHHHHHTTTC---CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe
Confidence 59999999999988754 89999999999999998777543 3589999999999999999999986543 56
Q ss_pred cEEEEeCCcccc-----c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hH----HHHH
Q 010184 98 QICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MF----RKVI 166 (516)
Q Consensus 98 ~v~~~~~~~~~~-----~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~----~~~l 166 (516)
.+..+.|+.... + .+..+|+|+||+++.....+ ..+....+++||+||||++... .+ ..++
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 788888765421 1 24478999999998653221 1122367899999999999762 33 3344
Q ss_pred hhcc-cceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHH
Q 010184 167 SLTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (516)
Q Consensus 167 ~~~~-~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 244 (516)
.... ..++++|||||...... .+..+++ |......... .-...........+
T Consensus 179 ~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~--------------------- 232 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKEIRP--VCRKFMQDPMEIFVDDET---KLTLHGLQQYYVKL--------------------- 232 (391)
T ss_dssp HTSCSSSEEEEEESSCCSTHHH--HHHHHCSSCEEEECCCCC---CCCCTTCEEEEEEC---------------------
T ss_pred hhCCCCceEEEEEeeCCHHHHH--HHHHHcCCCeEEEecCcc---ccCcccceEEEEEc---------------------
Confidence 4333 45789999999754322 1222222 2111100000 00001111111111
Q ss_pred HhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEE
Q 010184 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (516)
Q Consensus 245 l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv 319 (516)
....|...+..++... .+.++||||+++..++.+++.| .+..+||+++..+|.++++.|+++ +.++||
T Consensus 233 ---~~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv 305 (391)
T 1xti_A 233 ---KDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV 305 (391)
T ss_dssp ---CGGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEEE
T ss_pred ---CchhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEEE
Confidence 1122334455555443 4789999999999999999999 355799999999999999999997 999999
Q ss_pred EeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 320 ~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|+++++|+|+|++++||+++.++ |...|.||+||++|.|+
T Consensus 306 ~T~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~ 346 (391)
T 1xti_A 306 ATNLFGRGMDIERVNIAFNYDMPE-DSDTYLHRVARAGRFGT 346 (391)
T ss_dssp ESCCCSSCBCCTTEEEEEESSCCS-SHHHHHHHHCBCSSSCC
T ss_pred ECChhhcCCCcccCCEEEEeCCCC-CHHHHHHhcccccCCCC
Confidence 999999999999999999998775 99999999999999983
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=6.1e-38 Score=315.66 Aligned_cols=286 Identities=16% Similarity=0.170 Sum_probs=209.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
.+|+|||.++++.++.++ ++++.+|||+|||++++.++...+.++||++|+++|+.||.+++.++....+..+..+.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 91 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGK---NVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY 91 (337)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 369999999999988764 89999999999999999998888899999999999999999999998766566777777
Q ss_pred CCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----HHHHhhccc-ceE
Q 010184 104 SDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLTKS-HCK 174 (516)
Q Consensus 104 ~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~~~~~-~~~ 174 (516)
++.... .....+|+|+||+.+.....+ ..+....|++||+||||++.+..+ ..++..++. ...
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 163 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSK--------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKIT 163 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--------TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEE
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHc--------CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEE
Confidence 764321 113488999999988553211 111235689999999999876533 334444443 456
Q ss_pred EEEeccCCCCccchhhhHhhhCCc-cccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchH
Q 010184 175 LGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (516)
Q Consensus 175 l~LTATp~~~~~~~~~l~~~~gp~-~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~ 253 (516)
+++||||...... .+..+++.. ..... ....+.....+.++... +
T Consensus 164 ~~~SAT~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~------------------------~- 209 (337)
T 2z0m_A 164 GLFSATIPEEIRK--VVKDFITNYEEIEAC-------IGLANVEHKFVHVKDDW------------------------R- 209 (337)
T ss_dssp EEEESCCCHHHHH--HHHHHSCSCEEEECS-------GGGGGEEEEEEECSSSS------------------------H-
T ss_pred EEEeCcCCHHHHH--HHHHhcCCceeeecc-------cccCCceEEEEEeChHH------------------------H-
Confidence 7789999753222 222222211 11100 00111111111111110 0
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccc
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~ 332 (516)
..+ ..+ ....+.++||||+++..++.+++.|. +..+||+++..+|.++++.|+++ +.++||+|+++++|+|+|+
T Consensus 210 ~~~-~~~---~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gid~~~ 284 (337)
T 2z0m_A 210 SKV-QAL---RENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREG-EYDMLITTDVASRGLDIPL 284 (337)
T ss_dssp HHH-HHH---HTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECHHHHTTCCCCC
T ss_pred HHH-HHH---HhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcC-CCcEEEEcCccccCCCccC
Confidence 011 111 12567899999999999999999995 66899999999999999999997 9999999999999999999
Q ss_pred cCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 333 ANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 333 a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
+++||++++++ |+..|.||+||++|.|
T Consensus 285 ~~~Vi~~~~~~-s~~~~~Q~~GR~gR~g 311 (337)
T 2z0m_A 285 VEKVINFDAPQ-DLRTYIHRIGRTGRMG 311 (337)
T ss_dssp BSEEEESSCCS-SHHHHHHHHTTBCGGG
T ss_pred CCEEEEecCCC-CHHHhhHhcCccccCC
Confidence 99999998776 9999999999999998
No 15
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3.2e-37 Score=349.44 Aligned_cols=344 Identities=16% Similarity=0.189 Sum_probs=199.0
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--------CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+....+|||||.++++.++.+. ++++++|||+|||++++.++... ++++|||+|+++|+.||.++|.+|
T Consensus 243 l~~~~~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp -----CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHcCC---CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4446789999999999998754 89999999999999999988665 678999999999999999999999
Q ss_pred hCCCCCcEEEEeCCccccc-----cCCCcEEEEchhhhhccCCCChhHHHHHHHH-ccCCccEEEEccCccCCch-hHHH
Q 010184 92 STIQDDQICRFTSDSKERF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRK 164 (516)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~~-----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~ 164 (516)
+...+..+..++|+..... ....+|+|+||+++.....+. .+ ....|++||+||||++.+. .+..
T Consensus 320 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--------~~~~l~~~~liViDEaH~~~~~~~~~~ 391 (936)
T 4a2w_A 320 FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNV 391 (936)
T ss_dssp HHTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEEETGGGCSTTCHHHH
T ss_pred hcccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--------ccccccCCCEEEEECccccCCCccHHH
Confidence 7655678888888764321 235789999999986532211 01 1245799999999999865 4444
Q ss_pred HHhhc---------ccceEEEEeccCCCCccc--------hhhhHhhhCCccccc---cHHHHHhCCCcccceeEEEecc
Q 010184 165 VISLT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPKLYEA---NWLDLVKGGFIANVQCAEVWCP 224 (516)
Q Consensus 165 ~l~~~---------~~~~~l~LTATp~~~~~~--------~~~l~~~~gp~~~~~---~~~~l~~~g~l~~~~~~~v~~~ 224 (516)
++..+ ...++|+|||||...+.. +..+...++...... ...++.. ++.......+.+.
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~--~~~~p~~~~~~~~ 469 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVK 469 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH--HSCCCCEEEEECC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHH--hccCCcceEEecc
Confidence 44322 225799999999765421 222333344321111 1122221 2222222222221
Q ss_pred --CCH------------------------------------HHHHHHHHhhh-------------------------h--
Q 010184 225 --MTK------------------------------------EFFSEYLKKEN-------------------------S-- 239 (516)
Q Consensus 225 --~~~------------------------------------~~~~~~l~~~~-------------------------~-- 239 (516)
... ..|..++.... .
T Consensus 470 ~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l 549 (936)
T 4a2w_A 470 RRIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHL 549 (936)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 110 00111110000 0
Q ss_pred ------------------------------------HHHHHH----------------hhhCcchHHHHHHHHHHH-hhc
Q 010184 240 ------------------------------------KKKQAL----------------YVMNPNKFRACEFLIRFH-EQQ 266 (516)
Q Consensus 240 ------------------------------------~~~~~l----------------~~~~~~k~~~~~~ll~~~-~~~ 266 (516)
..+.+. ......|+..+..++..+ ...
T Consensus 550 ~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~ 629 (936)
T 4a2w_A 550 RKYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYN 629 (936)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccC
Confidence 000000 001345666677777542 224
Q ss_pred CCCeEEEEeccHHHHHHHHHHhC-----------------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccc
Q 010184 267 RGDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSID 329 (516)
Q Consensus 267 ~~~k~iVF~~~~~~~~~l~~~L~-----------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlD 329 (516)
.+.++||||+++..++.++..|. ...+||++++.+|.+++++|++++.++|||+|+++++|||
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGID 709 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGID 709 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCc
Confidence 57899999999999999999983 2246888999999999999999339999999999999999
Q ss_pred ccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHH
Q 010184 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (516)
Q Consensus 330 lp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (516)
+|++++||++++++ |+..|+||+|| ||.. .+.+|.+++.++.++.+.
T Consensus 710 lp~v~~VI~yD~p~-s~~~~iQr~GR-GR~~--------------~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 710 IVQCNLVVLYEYSG-NVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENEK 756 (936)
T ss_dssp CCCCSEEEEESCCS-CSHHHHCC----------------------CCCEEEEESCHHHHHHHH
T ss_pred chhCCEEEEeCCCC-CHHHHHHhcCC-CCCC--------------CCEEEEEEeCCCHHHHHH
Confidence 99999999998876 99999999999 8875 344677889988887443
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=5e-37 Score=312.53 Aligned_cols=289 Identities=19% Similarity=0.175 Sum_probs=211.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.+|+|+|.++++.++.++ +++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++++.....
T Consensus 27 ~~~~~~Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp CSCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 379999999999998874 389999999999999988776543 4689999999999999999999998776667
Q ss_pred EEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHHhhc-
Q 010184 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISLT- 169 (516)
Q Consensus 99 v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~~~- 169 (516)
+..+.++.... .....+|+|+||+.+.....+ ..+....+++||+||||++.+..+. .++..+
T Consensus 105 v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp EEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--------TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred EEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 87777765421 112578999999988553211 1122367899999999998765443 333333
Q ss_pred ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhC
Q 010184 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (516)
Q Consensus 170 ~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 249 (516)
+..++++|||||.+.... .+..+++...+... ....++......+ ..
T Consensus 177 ~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------------------~~ 223 (367)
T 1hv8_A 177 KDKRILLFSATMPREILN--LAKKYMGDYSFIKA-------KINANIEQSYVEV------------------------NE 223 (367)
T ss_dssp SSCEEEEECSSCCHHHHH--HHHHHCCSEEEEEC-------CSSSSSEEEEEEC------------------------CG
T ss_pred CCceEEEEeeccCHHHHH--HHHHHcCCCeEEEe-------cCCCCceEEEEEe------------------------Ch
Confidence 346789999999753221 22223332211100 0001111111111 01
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|+..+..++ . ..+.++||||+++..++.+++.| ++..+||+++..+|.++++.|+++ +.++||+|+++
T Consensus 224 ~~~~~~l~~~l---~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~ 298 (367)
T 1hv8_A 224 NERFEALCRLL---K-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVM 298 (367)
T ss_dssp GGHHHHHHHHH---C-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEECTTH
T ss_pred HHHHHHHHHHH---h-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 12333333333 3 56789999999999999999998 356799999999999999999997 99999999999
Q ss_pred cccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|++++||+++.++ |+..+.||+||++|.|+
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~ 334 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQ-NPESYMHRIGRTGRAGK 334 (367)
T ss_dssp HHHCCCSCCSEEEESSCCS-CHHHHHHHSTTTCCSSS
T ss_pred hcCCCcccCCEEEEecCCC-CHHHhhhcccccccCCC
Confidence 9999999999999998775 99999999999999983
No 17
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.4e-37 Score=322.00 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=209.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c----------CCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.+|+|+|.++++.++.+. +.++++|||+|||++++.++.. + +.++|||+|+++|+.||.+++.++.
T Consensus 77 ~~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGR---DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 369999999999988664 8999999999999998876532 1 3479999999999999999999987
Q ss_pred CCCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HH
Q 010184 93 TIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FR 163 (516)
Q Consensus 93 ~~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~ 163 (516)
......+..+.|+... .+...++|+|+||+.+.....+. .+....++++|+||||++.+.. +.
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf~~~~~ 225 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--------FITFEDTRFVVLDEADRMLDMGFSEDMR 225 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--------SCCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred ccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--------CcccccCCeEEEccHhhhhccCcHHHHH
Confidence 6555667777776432 13456899999999885532211 1223678999999999988654 44
Q ss_pred HHHhhc---ccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 164 KVISLT---KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 164 ~~l~~~---~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
+++..+ ...+.+++|||+...... ....++. +........ .+....+......++
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~~~~~~--~~~~~l~~~~~i~~~~~----~~~~~~i~~~~~~~~--------------- 284 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFPEEIQR--MAGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN--------------- 284 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCCHHHHH--HHHTTCSSCEEEEESST----TCCCTTEEEEEEECC---------------
T ss_pred HHHHhcCCCCCceEEEEeccCCHHHHH--HHHHhccCCEEEEeccc----cccccccceEEEEeC---------------
Confidence 455543 346789999999643221 1111111 111111000 011111111111111
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCC
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
...|...+..++... +.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ +
T Consensus 285 ---------~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~ 350 (434)
T 2db3_A 285 ---------KYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-S 350 (434)
T ss_dssp ---------GGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-S
T ss_pred ---------cHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-C
Confidence 112333444444333 345999999999999999998 356799999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.+|||||+++++|+|+|++++||+++.++ |...|+||+||+||.|.
T Consensus 351 ~~vLvaT~v~~rGlDi~~v~~VI~~d~p~-~~~~y~qriGR~gR~g~ 396 (434)
T 2db3_A 351 MKVLIATSVASRGLDIKNIKHVINYDMPS-KIDDYVHRIGRTGRVGN 396 (434)
T ss_dssp CSEEEECGGGTSSCCCTTCCEEEESSCCS-SHHHHHHHHTTSSCTTC
T ss_pred CcEEEEchhhhCCCCcccCCEEEEECCCC-CHHHHHHHhcccccCCC
Confidence 99999999999999999999999998775 99999999999999983
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=1.2e-37 Score=322.80 Aligned_cols=292 Identities=17% Similarity=0.152 Sum_probs=212.2
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.......
T Consensus 59 ~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 135 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 135 (410)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeE
Confidence 59999999999988764 89999999999999998877542 4689999999999999999999987666667
Q ss_pred EEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----HHhhc
Q 010184 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (516)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~~~ 169 (516)
+..+.|+... .+....+|+|+||+.+.....+ ..+....+++||+||||++.+..+.. ++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 207 (410)
T 2j0s_A 136 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 207 (410)
T ss_dssp EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--------CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC
Confidence 7777776432 1224578999999988543221 11223568999999999988765443 34433
Q ss_pred -ccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 170 -KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
...+++++||||...... .+..+++ |......... ............++.
T Consensus 208 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---------------------- 259 (410)
T 2j0s_A 208 PPATQVVLISATLPHEILE--MTNKFMTDPIRILVKRDE----LTLEGIKQFFVAVER---------------------- 259 (410)
T ss_dssp CTTCEEEEEESCCCHHHHT--TGGGTCSSCEEECCCGGG----CSCTTEEEEEEEESS----------------------
T ss_pred ccCceEEEEEcCCCHHHHH--HHHHHcCCCEEEEecCcc----ccCCCceEEEEEeCc----------------------
Confidence 345789999999643211 1111221 2211111000 001111111111111
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
...|...+..++.... ..++||||+++..++.+++.| ++..+||++++.+|.++++.|+++ +.++||+|+
T Consensus 260 -~~~k~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 334 (410)
T 2j0s_A 260 -EEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTD 334 (410)
T ss_dssp -TTHHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECG
T ss_pred -HHhHHHHHHHHHHhcC---CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEEEECC
Confidence 1113445555555443 569999999999999999998 467899999999999999999998 899999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~ 372 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPN-NRELYIHRIGRSGRYGR 372 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCS-SHHHHHHHHTTSSGGGC
T ss_pred hhhCcCCcccCCEEEEECCCC-CHHHHHHhcccccCCCC
Confidence 999999999999999998775 99999999999999883
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=321.63 Aligned_cols=293 Identities=13% Similarity=0.089 Sum_probs=197.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh------cCCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|+|||.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++......
T Consensus 61 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCCHHHHHHhHHHhCCC---CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 479999999999988764 8999999999999998877644 2467999999999999999999998766666
Q ss_pred cEEEEeCCcccc------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----HHHHh
Q 010184 98 QICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVIS 167 (516)
Q Consensus 98 ~v~~~~~~~~~~------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~l~ 167 (516)
.+....++.... ..+..+|+|+|++.+..... ...+....+++||+||||++.+..+ ..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN--------RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH--------HTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH--------cCCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 677666654321 12568999999998854321 1123345689999999999865533 34444
Q ss_pred hc-ccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHH
Q 010184 168 LT-KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (516)
Q Consensus 168 ~~-~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l 245 (516)
.+ +..++++|||||...... .+..+++ |......... ............+..
T Consensus 210 ~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~-------------------- 263 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSDVLE--VTKKFMRDPIRILVKKEE----LTLEGIRQFYINVER-------------------- 263 (414)
T ss_dssp TSCTTCEEEEECSCCCHHHHH--HHTTTCSSCEEECCCCCC----CCTTSCCEEEEECSS--------------------
T ss_pred hCCCCCeEEEEEEecCHHHHH--HHHHHcCCCEEEEecCCc----cCCCCceEEEEEeCh--------------------
Confidence 44 345789999999632211 1111111 1111000000 000011111111110
Q ss_pred hhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEE
Q 010184 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (516)
Q Consensus 246 ~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~ 320 (516)
...|...+..++.. ..+.++||||+++..++.+++.| ++..+||++++.+|.++++.|+++ ..+|||+
T Consensus 264 ---~~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~ 336 (414)
T 3eiq_A 264 ---EEWKLDTLCDLYET---LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRVLIT 336 (414)
T ss_dssp ---STTHHHHHHHHHHS---SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----CEEE
T ss_pred ---HHhHHHHHHHHHHh---CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 11233444444443 34679999999999999999998 366899999999999999999997 8999999
Q ss_pred eCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 321 t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+++++|+|+|++++||+++.++ |...|.||+||++|.|+
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~ 376 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLPT-NRENYIHRIGRGGRFGR 376 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCCS-STHHHHHHSCCC-----
T ss_pred CCccccCCCccCCCEEEEeCCCC-CHHHhhhhcCcccCCCC
Confidence 99999999999999999998775 99999999999999883
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=3.4e-37 Score=319.87 Aligned_cols=293 Identities=15% Similarity=0.157 Sum_probs=209.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------------------------CCCEEEEEeChh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------------------KKSCLCLATNAV 79 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------------------~~~~Lvl~P~~~ 79 (516)
.+|+|+|.++++.++.+. ++++.+|||+|||++++.++... ..++||++|+++
T Consensus 36 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKR---DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHccCC---CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 489999999999888764 89999999999999887765321 146999999999
Q ss_pred hHHHHHHHHHHhhCCCCCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccC
Q 010184 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (516)
Q Consensus 80 L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (516)
|+.||.+++.++.......+..+.|+... .+....+|+|+||+.+.....+ ..+....+++||+|||
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--------GKIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--------TSBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--------CCcChhhCcEEEEECh
Confidence 99999999999876666677877776532 1245689999999988653211 1122356789999999
Q ss_pred ccCCchhHH----HHHhhc--c---cceEEEEeccCCCCccchhhhHhhhCCc-cccccHHHHHhCCCcccceeEEEecc
Q 010184 155 HVVPAHMFR----KVISLT--K---SHCKLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCP 224 (516)
Q Consensus 155 H~~~~~~~~----~~l~~~--~---~~~~l~LTATp~~~~~~~~~l~~~~gp~-~~~~~~~~l~~~g~l~~~~~~~v~~~ 224 (516)
|++.+..|. .++... . ..+++++|||+.+.... .+..+++.. ........ .....+....++++
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~i~~~~~~~~ 258 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQM--LARDFLDEYIFLAVGRVG----STSENITQKVVWVE 258 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHH--HHHHHCSSCEEEEEC--------CCSSEEEEEEECC
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHH--HHHHHcCCCEEEEeCCCC----CCccCceEEEEEec
Confidence 998765443 333321 1 34689999999643221 122222221 11111000 00111111111211
Q ss_pred CCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCH
Q 010184 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSH 299 (516)
Q Consensus 225 ~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~ 299 (516)
...|...+..++... ..+.++||||+++..++.++..| ++..+||++++
T Consensus 259 ------------------------~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 259 ------------------------ESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312 (417)
T ss_dssp ------------------------GGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred ------------------------cHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCH
Confidence 123334555555543 35789999999999999999998 35679999999
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 300 ~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|.++++.|+++ +.+|||+|+++++|+|+|++++||+++.++ |...|+||+||++|.|.
T Consensus 313 ~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~ 372 (417)
T 2i4i_A 313 RDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGN 372 (417)
T ss_dssp HHHHHHHHHHHHT-SSCEEEECHHHHTTSCCCCEEEEEESSCCS-SHHHHHHHHTTBCC--C
T ss_pred HHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEEcCCC-CHHHHHHhcCccccCCC
Confidence 9999999999997 999999999999999999999999998775 99999999999999983
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=5.5e-36 Score=307.90 Aligned_cols=296 Identities=17% Similarity=0.174 Sum_probs=209.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.+|+|+|.++++.++.++ .+++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++......
T Consensus 26 ~~~~~~Q~~~i~~~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNP-PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 479999999999988762 2489999999999999988776442 468999999999999999999998766666
Q ss_pred cEEEEeCCcccc-ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-h----hHHHHHhhcc-
Q 010184 98 QICRFTSDSKER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLTK- 170 (516)
Q Consensus 98 ~v~~~~~~~~~~-~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~----~~~~~l~~~~- 170 (516)
.+....++.... .....+|+|+||+.+.....+ ..+....+++||+||||++.+ . .+..+...++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 105 TSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHT--------TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eEEEEecCchhhhccCCCCEEEEcHHHHHHHHHc--------CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 677766654322 234688999999988553211 112235789999999998875 2 3333444443
Q ss_pred cceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhC
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~ 249 (516)
..++++|||||...... ....+++ +......... ...... ..........
T Consensus 177 ~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~~~--------------------- 227 (395)
T 3pey_A 177 DTQLVLFSATFADAVRQ--YAKKIVPNANTLELQTNE----VNVDAI--KQLYMDCKNE--------------------- 227 (395)
T ss_dssp TCEEEEEESCCCHHHHH--HHHHHSCSCEEECCCGGG----CSCTTE--EEEEEECSSH---------------------
T ss_pred CcEEEEEEecCCHHHHH--HHHHhCCCCeEEEccccc----cccccc--cEEEEEcCch---------------------
Confidence 35789999999642211 1112221 1111111000 001111 1111111100
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|...+..++.. ..+.++||||+++..++.+++.| ++..+||+++..+|.++++.|+++ +.++||+|+++
T Consensus 228 ~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 303 (395)
T 3pey_A 228 ADKFDVLTELYGL---MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKVLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHHTT---TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCEEEECGGG
T ss_pred HHHHHHHHHHHHh---ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCEEEECChh
Confidence 0122334444433 34689999999999999999998 467899999999999999999998 99999999999
Q ss_pred cccccccccCEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~-----~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|++++||+++.++ .|+..|.||+||++|.|+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 345 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 345 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTC
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCC
Confidence 9999999999999987653 188999999999999883
No 22
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=3.6e-36 Score=332.93 Aligned_cols=331 Identities=18% Similarity=0.218 Sum_probs=208.1
Q ss_pred CCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----C----CCEEEEEeChhhHHHH-HHHHHHh
Q 010184 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----K----KSCLCLATNAVSVDQW-AFQFKLW 91 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~----~~~Lvl~P~~~L~~Qw-~~e~~~~ 91 (516)
+.++|||||.++++.++.+. ++++++|||+|||++++.++... . +++|||+|+++|+.|| .++|.++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGK---NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSC---CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCCccHHHHHHHHHHHhCC---CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 45789999999999998854 89999999999999999887542 2 7899999999999999 9999999
Q ss_pred hCCCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----h
Q 010184 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----M 161 (516)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~ 161 (516)
++. ...+..++|+.... +.+..+|+|+||++|.....+... .....+....|++||+||||++... .
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~--~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLEN--GEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC----------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhcccc--ccccceecccCcEEEEECccccCccchHHHH
Confidence 764 35788888875432 225689999999999765432110 0112233467899999999998643 1
Q ss_pred HHHHHhhc--------------ccceEEEEeccCCCCccc--------hhhhHhhhCC-ccccc--cHHHHHhCCCcccc
Q 010184 162 FRKVISLT--------------KSHCKLGLTATLVREDER--------ITDLNFLIGP-KLYEA--NWLDLVKGGFIANV 216 (516)
Q Consensus 162 ~~~~l~~~--------------~~~~~l~LTATp~~~~~~--------~~~l~~~~gp-~~~~~--~~~~l~~~g~l~~~ 216 (516)
....+... +..++|+|||||...+.. +..+...+++ .+... ...++......+..
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 22222111 446799999999975431 2233333443 22211 11222211111111
Q ss_pred eeEEEeccCCH---------------------------HHHHHHHHh---------------------------------
Q 010184 217 QCAEVWCPMTK---------------------------EFFSEYLKK--------------------------------- 236 (516)
Q Consensus 217 ~~~~v~~~~~~---------------------------~~~~~~l~~--------------------------------- 236 (516)
.+..+...... ..+..+...
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 11111111100 000000000
Q ss_pred ---------------hhhHH-----------------------------H--HHHhhh---CcchHHHHHHHHHH-Hhhc
Q 010184 237 ---------------ENSKK-----------------------------K--QALYVM---NPNKFRACEFLIRF-HEQQ 266 (516)
Q Consensus 237 ---------------~~~~~-----------------------------~--~~l~~~---~~~k~~~~~~ll~~-~~~~ 266 (516)
..... . ..+... ...|+..+..++.. ....
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 00000 0 000000 12333344444433 2223
Q ss_pred C-CCeEEEEeccHHHHHHHHHHhC-----------CceEecC--------CCHHHHHHHHHHHhcCCCccEEEEeCCCcc
Q 010184 267 R-GDKIIVFADNLFALTEYAMKLR-----------KPMIYGA--------TSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (516)
Q Consensus 267 ~-~~k~iVF~~~~~~~~~l~~~L~-----------~~~i~g~--------~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~ 326 (516)
+ +.++||||+++..++.+++.|. +..+||+ +++.+|.+++++|+++ +++|||+|+++++
T Consensus 398 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~VLVaT~~~~~ 476 (699)
T 4gl2_A 398 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KINLLIATTVAEE 476 (699)
T ss_dssp SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSEEECSCCT
T ss_pred CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCcEEEEcccccc
Confidence 4 7899999999999999999862 4478999 9999999999999997 9999999999999
Q ss_pred cccccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 327 GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
|||+|++++||+++.++ |+..|+||+||++|.|
T Consensus 477 GIDip~v~~VI~~d~p~-s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 477 GLDIKECNIVIRYGLVT-NEIAMVQARGRARADE 509 (699)
T ss_dssp TSCCCSCCCCEEESCCC-CHHHHHHHHTTSCSSS
T ss_pred CCccccCCEEEEeCCCC-CHHHHHHHcCCCCCCC
Confidence 99999999999998886 9999999999976544
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=1.1e-37 Score=320.87 Aligned_cols=293 Identities=17% Similarity=0.154 Sum_probs=115.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh------cCCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.+|+|||.++++.++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++....+.
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 489999999999998864 8999999999999998776643 2358999999999999999999998766666
Q ss_pred cEEEEeCCccccc----cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhhc
Q 010184 98 QICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT 169 (516)
Q Consensus 98 ~v~~~~~~~~~~~----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~~ 169 (516)
.+..+.|+..... ....+|+|+||+.+.....+ ..+....+++||+||||++.+.. +..++..+
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~ 190 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 190 (394)
T ss_dssp CEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC
Confidence 7888877654210 12478999999988543211 11223578999999999986543 33444444
Q ss_pred -ccceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 170 -KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
...++++|||||...... .+..+++ |...... ...........+. ....
T Consensus 191 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~---------~~~~ 241 (394)
T 1fuu_A 191 PPTTQVVLLSATMPNDVLE--VTTKFMRNPVRILVK------------------KDELTLEGIKQFY---------VNVE 241 (394)
T ss_dssp CTTCEEEEECSSCCHHHHH--HHHHHCCSCEEEEEC------------------C-------------------------
T ss_pred CCCceEEEEEEecCHHHHH--HHHHhcCCCeEEEec------------------CccccCCCceEEE---------EEcC
Confidence 345789999999642111 1111221 1111100 0000000000000 0000
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
....|...+..+++.. .+.++||||+++..++.+++.|. +..+||+++..+|.++++.|+++ +.++||+|+
T Consensus 242 ~~~~~~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~ 317 (394)
T 1fuu_A 242 EEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEEEECC
Confidence 1112444555555443 36799999999999999999984 56799999999999999999997 899999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 318 ~~~~Gldi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 318 LLARGIDVQQVSLVINYDLPA-NKENYIHRIGRGGRFGR 355 (394)
T ss_dssp ---------------------------------------
T ss_pred hhhcCCCcccCCEEEEeCCCC-CHHHHHHHcCcccCCCC
Confidence 999999999999999997775 99999999999999883
No 24
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=8.7e-35 Score=300.98 Aligned_cols=297 Identities=17% Similarity=0.187 Sum_probs=207.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c-----CCCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
..|+|+|.++++.++.+ ..+++++++|||+|||++++.++.. + +.++||++|+++|+.||.+.+.++... +.
T Consensus 46 ~~~~~~Q~~~i~~~~~~-~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 46 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp CSCCHHHHHHHHHHHSS-SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHhcC-CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 47999999999999876 1248999999999999998776643 2 237999999999999999999988643 34
Q ss_pred CcEEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-h----hHHHHHhhc
Q 010184 97 DQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLT 169 (516)
Q Consensus 97 ~~v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~----~~~~~l~~~ 169 (516)
..+....++.... .....+|+|+|++.+.....+. ..+....+++||+||||++.. . ....+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 5666666654321 2345789999999885532110 111125689999999998764 2 333344444
Q ss_pred c-cceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 170 K-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
. ..+++++||||...... .....++ |......... ..........+.++...
T Consensus 198 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-------------------- 251 (412)
T 3fht_A 198 PRNCQMLLFSATFEDSVWK--FAQKVVPDPNVIKLKREE----ETLDTIKQYYVLCSSRD-------------------- 251 (412)
T ss_dssp CTTCEEEEEESCCCHHHHH--HHHHHSSSCEEECCCGGG----SSCTTEEEEEEECSSHH--------------------
T ss_pred CCCceEEEEEeecCHHHHH--HHHHhcCCCeEEeecccc----ccccCceEEEEEcCChH--------------------
Confidence 3 34789999999643221 1122222 2211111000 01111111111111111
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
.|...+..++... .+.++||||+++..++.++..| ++..+||++++.+|.++++.|+++ +.++||+|+
T Consensus 252 ---~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 324 (412)
T 3fht_A 252 ---EKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 324 (412)
T ss_dssp ---HHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEEEECG
T ss_pred ---HHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEEEEcC
Confidence 1233444444443 4679999999999999999999 467899999999999999999998 999999999
Q ss_pred CCcccccccccCEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~-----~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|+|+|++++||+++.++ .|...|+||+||++|.|.
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 368 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCC
Confidence 999999999999999997764 367899999999999883
No 25
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.5e-35 Score=326.11 Aligned_cols=338 Identities=17% Similarity=0.198 Sum_probs=191.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--------CCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
.+|||||.+++++++.+. ++++++|||+|||++++.++... ++++|||+|+++|+.||.++|.+++...
T Consensus 12 ~~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~~ 88 (696)
T 2ykg_A 12 FKPRNYQLELALPAMKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFERH 88 (696)
T ss_dssp -CCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTTT
T ss_pred CCccHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhccC
Confidence 589999999999988754 89999999999999998877432 1689999999999999999999997655
Q ss_pred CCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHH-ccCCccEEEEccCccCCch-hHHHHHh-
Q 010184 96 DDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS- 167 (516)
Q Consensus 96 ~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~~vIlDEaH~~~~~-~~~~~l~- 167 (516)
+..+..++|+.... +....+|+|+||+++.....+ ..+ ....|++||+||||++.+. .+..++.
T Consensus 89 ~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--------~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 89 GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--------GTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--------TSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--------CcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 66788888875422 124589999999998653221 111 2356899999999998764 3333321
Q ss_pred ---h-c-----ccceEEEEeccCCCCccc-----hhhhHhhh---CCccc---cccHHHHHhCCCcccceeEEEe-----
Q 010184 168 ---L-T-----KSHCKLGLTATLVREDER-----ITDLNFLI---GPKLY---EANWLDLVKGGFIANVQCAEVW----- 222 (516)
Q Consensus 168 ---~-~-----~~~~~l~LTATp~~~~~~-----~~~l~~~~---gp~~~---~~~~~~l~~~g~l~~~~~~~v~----- 222 (516)
. + ...++|+|||||...+.. ...+..++ ....+ .....++......+...+..+.
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 1 1 346899999999854422 11222221 10000 0001111100000000000000
Q ss_pred --------------------------------ccCCHHHHHHHHH-----------------------------------
Q 010184 223 --------------------------------CPMTKEFFSEYLK----------------------------------- 235 (516)
Q Consensus 223 --------------------------------~~~~~~~~~~~l~----------------------------------- 235 (516)
.+.....+..+..
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence 0000000000000
Q ss_pred -------------------hh---------hhHHHHHHh------------h----hCcchHHHHHHHHHHHh-hcCCCe
Q 010184 236 -------------------KE---------NSKKKQALY------------V----MNPNKFRACEFLIRFHE-QQRGDK 270 (516)
Q Consensus 236 -------------------~~---------~~~~~~~l~------------~----~~~~k~~~~~~ll~~~~-~~~~~k 270 (516)
.. ......... . ....|+..+..++..+. ..++.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 00 000000000 0 14557777777776541 135789
Q ss_pred EEEEeccHHHHHHHHHHhC---------CceE--------ecCCCHHHHHHHHHHHhc-CCCccEEEEeCCCcccccccc
Q 010184 271 IIVFADNLFALTEYAMKLR---------KPMI--------YGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSIDIPE 332 (516)
Q Consensus 271 ~iVF~~~~~~~~~l~~~L~---------~~~i--------~g~~~~~eR~~~l~~F~~-~~~~~vLv~t~~~~~GlDlp~ 332 (516)
+||||+++..++.+++.|. +..+ ||++++.+|.+++++|++ + ..+|||+|+++++|||+|+
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g-~~~vLVaT~v~~~GiDip~ 479 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGIDIAQ 479 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC---CC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-CccEEEEechhhcCCcCcc
Confidence 9999999999999999982 2235 569999999999999998 6 9999999999999999999
Q ss_pred cCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhh
Q 010184 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (516)
Q Consensus 333 a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (516)
+++||+++.++ |+..|+||+|| ||.. .+.+|.+++.++.++
T Consensus 480 v~~VI~~d~p~-s~~~~~Qr~GR-GR~~--------------~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 480 CNLVILYEYVG-NVIKMIQTRGR-GRAR--------------GSKCFLLTSNAGVIE 520 (696)
T ss_dssp CSEEEEESCC---CCCC----------C--------------CCEEEEEESCHHHHH
T ss_pred CCEEEEeCCCC-CHHHHHHhhcc-CcCC--------------CceEEEEecCCCHHH
Confidence 99999998876 99999999999 9975 235577888777654
No 26
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=4.3e-35 Score=317.14 Aligned_cols=303 Identities=16% Similarity=0.154 Sum_probs=204.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHHHHHHhh--
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS-- 92 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~-- 92 (516)
.|+|+|.+++..++.. ..+++++.+|||+|||++++.++... ..++|||+|+++|+.||.+++.+++
T Consensus 43 ~~~~~Q~~~i~~il~~-~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~ 121 (579)
T 3sqw_A 43 GLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121 (579)
T ss_dssp SCCHHHHHHHHHHHCS-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhh
Confidence 5999999999999853 12589999999999999988766431 2379999999999999999999875
Q ss_pred --CCCCCcEEEEeCCcccc-----c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH-
Q 010184 93 --TIQDDQICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR- 163 (516)
Q Consensus 93 --~~~~~~v~~~~~~~~~~-----~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~- 163 (516)
++....+..+.++.... + ...++|+|+||+.+..... .. .......+++||+||||++....|.
T Consensus 122 ~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~gf~~ 194 (579)
T 3sqw_A 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEIGFRD 194 (579)
T ss_dssp CGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTSTTTHH
T ss_pred cccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHH------hc-cccccccCCEEEEEChHHhhcCCCHH
Confidence 34445566666654311 1 2358899999999965421 11 1122367899999999999865443
Q ss_pred ---HHHhhcc--------cceEEEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHH
Q 010184 164 ---KVISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (516)
Q Consensus 164 ---~~l~~~~--------~~~~l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~ 231 (516)
.++..+. ..++++||||+...... ....+++. ..................+....+.++.....
T Consensus 195 ~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-- 270 (579)
T 3sqw_A 195 DLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS-- 270 (579)
T ss_dssp HHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH--
T ss_pred HHHHHHHHhhhhhcccccCceEEEEeccCChHHHH--HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhh--
Confidence 3333332 34689999999753221 11112221 11100000000000011111111111111110
Q ss_pred HHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHhC--------CceEecCCCHHHH
Q 010184 232 EYLKKENSKKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVER 302 (516)
Q Consensus 232 ~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR 302 (516)
+...+..+..... ...+.++||||+++..++.++..|. +..+||++++.+|
T Consensus 271 --------------------~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R 330 (579)
T 3sqw_A 271 --------------------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKR 330 (579)
T ss_dssp --------------------HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHH
T ss_pred --------------------HHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHH
Confidence 1112222222211 1457899999999999999998882 3469999999999
Q ss_pred HHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 303 ~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.++++.|+++ +.+|||||+++++|||+|++++||+++.+. |+..|+||+||++|.|.
T Consensus 331 ~~~~~~F~~g-~~~vLVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~ 387 (579)
T 3sqw_A 331 TSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGK 387 (579)
T ss_dssp HHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTC
T ss_pred HHHHHHhhcC-CCeEEEEcchhhcCCCcccCCEEEEcCCCC-CHHHhhhhccccccCCC
Confidence 9999999997 999999999999999999999999998775 99999999999999983
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=5.9e-35 Score=315.27 Aligned_cols=304 Identities=16% Similarity=0.149 Sum_probs=204.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHHHHHHhh-
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS- 92 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~e~~~~~- 92 (516)
..|+|+|.++++.++.. ..+++++++|||+|||++++.++... ..++|||+|+++|+.||.+++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~~-~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSS-EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SSCCHHHHHHHHHHHSS-SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcC-CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 35999999999999853 12589999999999999988766332 1379999999999999999999874
Q ss_pred ---CCCCCcEEEEeCCcccc------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH
Q 010184 93 ---TIQDDQICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163 (516)
Q Consensus 93 ---~~~~~~v~~~~~~~~~~------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~ 163 (516)
++....+..+.++.... ....++|+|+||+.+..... .. .......+++||+||||++....|.
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~~f~ 244 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEIGFR 244 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred hccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHH------hc-cccccccceEEEEeCHHHHhccchH
Confidence 33444566666654311 12367899999999865421 11 1112367899999999998865443
Q ss_pred H----HHhhcc--------cceEEEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHH
Q 010184 164 K----VISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (516)
Q Consensus 164 ~----~l~~~~--------~~~~l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~ 230 (516)
. ++..+. ..++++||||+...... ....+++. ..................+....+.++......
T Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (563)
T 3i5x_A 245 DDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI 322 (563)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHH
T ss_pred HHHHHHHHhhhhccccCccCceEEEEEccCCHHHHH--HHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhH
Confidence 3 333221 34689999999753221 11111211 111000000000000111111111111111100
Q ss_pred HHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHh------C--CceEecCCCHHH
Q 010184 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL------R--KPMIYGATSHVE 301 (516)
Q Consensus 231 ~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L------~--~~~i~g~~~~~e 301 (516)
...+..+..... ...+.++||||+++..++.++..| + +..+||++++.+
T Consensus 323 ----------------------~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 323 ----------------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp ----------------------HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ----------------------HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 112222222211 145789999999999999999888 2 346999999999
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 302 R~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|.++++.|+++ +.+|||||+++++|||+|++++||+++.+. |...|+||+||++|.|.
T Consensus 381 R~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~ 438 (563)
T 3i5x_A 381 RTSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGK 438 (563)
T ss_dssp HHHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTC
T ss_pred HHHHHHHHhcC-CCCEEEEcchhhcCCCcccCCEEEEECCCC-chhhhhhhcCccccCCC
Confidence 99999999998 999999999999999999999999998775 99999999999999983
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=5.5e-35 Score=303.50 Aligned_cols=280 Identities=19% Similarity=0.174 Sum_probs=202.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.++|+|+|.++++.++.+. ++++.+|||+|||++++.++.. .+.++|||+|+++|+.||.+++.+|.. .+..+
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v 94 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKI 94 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCE
T ss_pred CCCCCHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceE
Confidence 4579999999999988764 8999999999999988777644 457899999999999999999999876 56678
Q ss_pred EEEeCCccc--------cc-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-----------
Q 010184 100 CRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----------- 159 (516)
Q Consensus 100 ~~~~~~~~~--------~~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~----------- 159 (516)
..++|+... .+ .+.++|+|+||+.+... +..+....+++||+||||++..
T Consensus 95 ~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~----------l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHC----------HHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHH----------HHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 888887643 11 24589999999998543 3345557899999999997642
Q ss_pred ----hh-HHHHHhhc------------ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEe
Q 010184 160 ----HM-FRKVISLT------------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (516)
Q Consensus 160 ----~~-~~~~l~~~------------~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~ 222 (516)
+. ...++..+ ...+++++||||............+++...... ......+ ....
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i--~~~~ 235 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-------VSVARNI--THVR 235 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCC-------CCCCCSE--EEEE
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCcc-------ccccccc--hhee
Confidence 12 45555554 456789999996543322111222222111000 0001111 1111
Q ss_pred ccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----Cc-eEecC
Q 010184 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MIYGA 296 (516)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~-~i~g~ 296 (516)
... .+...+..++... +.++||||+++..++.++..|. +. .+||.
T Consensus 236 ~~~-------------------------~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 236 ISS-------------------------RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp ESS-------------------------CCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred ecc-------------------------CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 111 2233444555442 5799999999999999999983 33 56774
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEE----eCCCcccccccc-cCEEEEecCCC-CCHHHHHHHhhcccccCC
Q 010184 297 TSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA-GSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 297 ~~~~eR~~~l~~F~~~~~~~vLv~----t~~~~~GlDlp~-a~~vI~~~~~~-~s~~~~~Qr~GR~~R~g~ 361 (516)
+|. ++.|+++ ++++||| |+++++|+|+|+ +++||+++.+. .|+..|+||+||++|.|.
T Consensus 287 ----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g~ 350 (414)
T 3oiy_A 287 ----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRILN 350 (414)
T ss_dssp ----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEET
T ss_pred ----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCCC
Confidence 444 9999998 9999999 999999999999 99999998771 399999999999999984
No 29
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=9.3e-35 Score=313.20 Aligned_cols=291 Identities=16% Similarity=0.169 Sum_probs=210.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
.++||+|.++++.++.+. ++++.+|||+|||++++.++....+.+|||+|+++|+.||.+.+.++ ++ .+..++
T Consensus 43 ~~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~-gi---~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK---EVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GI---SATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC---CEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHH-TC---CEEECC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhc-CC---cEEEEe
Confidence 379999999999998864 89999999999999999988888889999999999999999999997 33 566666
Q ss_pred CCcccc-----------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hHH---
Q 010184 104 SDSKER-----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR--- 163 (516)
Q Consensus 104 ~~~~~~-----------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~--- 163 (516)
++.... ..+..+|+|+||+++..... -...+...+....+++||+||||++... .+.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~---~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~ 192 (591)
T 2v1x_A 116 ASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM---FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG 192 (591)
T ss_dssp SSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH---HHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG
T ss_pred CCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH---HHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHH
Confidence 664321 24578999999998854200 0011112222468899999999998642 222
Q ss_pred HHHhhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCcc-cceeEEEeccCCHHHHHHHHHhhhh
Q 010184 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIA-NVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l~-~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
.+...++...+++|||||..... .++...++ +..+. .++.. +..+.....+..
T Consensus 193 ~l~~~~~~~~ii~lSAT~~~~v~--~~i~~~l~~~~~~~~~--------~~~~r~nl~~~v~~~~~~------------- 249 (591)
T 2v1x_A 193 ILKRQFPNASLIGLTATATNHVL--TDAQKILCIEKCFTFT--------ASFNRPNLYYEVRQKPSN------------- 249 (591)
T ss_dssp HHHHHCTTSEEEEEESSCCHHHH--HHHHHHTTCCSCEEEE--------CCCCCTTEEEEEEECCSS-------------
T ss_pred HHHHhCCCCcEEEEecCCCHHHH--HHHHHHhCCCCcEEEe--------cCCCCcccEEEEEeCCCc-------------
Confidence 23344556789999999974321 12333332 11111 11111 111111111111
Q ss_pred HHHHHHhhhCcchHHHHHHHHHHHh-hcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCC
Q 010184 240 KKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSR 313 (516)
Q Consensus 240 ~~~~~l~~~~~~k~~~~~~ll~~~~-~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~ 313 (516)
+...+..+++... ...+.++||||+++..++.++..| ++..+||++++.+|.++++.|+++
T Consensus 250 ------------~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g- 316 (591)
T 2v1x_A 250 ------------TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN- 316 (591)
T ss_dssp ------------HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-
T ss_pred ------------HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-
Confidence 1122333333332 125789999999999999999999 356899999999999999999997
Q ss_pred CccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 314 ~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++|||+|+++++|||+|++++||+++.+. |...|.|++||+||.|.
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~-s~~~y~Qr~GRaGR~G~ 363 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSK-SMENYYQESGRAGRDDM 363 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCS-SHHHHHHHHTTSCTTSS
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCC-CHHHHHHHhccCCcCCC
Confidence 999999999999999999999999997775 99999999999999883
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.8e-34 Score=307.58 Aligned_cols=282 Identities=17% Similarity=0.202 Sum_probs=210.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
.++||+|.++++.++.+. ++++.+|||+|||++++.++....+.+|||+|+++|+.||.+.+..+ ++ .+..++
T Consensus 24 ~~~r~~Q~~~i~~il~g~---d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~-gi---~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQAN-GV---AAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHT-TC---CEEEEC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHc-CC---cEEEEe
Confidence 378999999999998764 89999999999999999888877889999999999999999999986 33 466666
Q ss_pred CCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hHH---HH
Q 010184 104 SDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR---KV 165 (516)
Q Consensus 104 ~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~~---~~ 165 (516)
++.... ..+..+|+++||+++... ...+.+....+++||+||||++... .+. .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--------~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l 168 (523)
T 1oyw_A 97 STQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--------NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168 (523)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--------THHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGH
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--------HHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHH
Confidence 654311 135689999999999642 2234455578999999999998642 222 23
Q ss_pred HhhcccceEEEEeccCCCCccchhhhHhhhC---CccccccHHHHHhCCCc-ccceeEEEeccCCHHHHHHHHHhhhhHH
Q 010184 166 ISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFI-ANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (516)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~~~~l~~~~g---p~~~~~~~~~l~~~g~l-~~~~~~~v~~~~~~~~~~~~l~~~~~~~ 241 (516)
...++...+++|||||..... .++...++ |..+.. ++- .+..+....
T Consensus 169 ~~~~~~~~~i~lSAT~~~~~~--~~i~~~l~~~~~~~~~~--------~~~r~~l~~~v~~------------------- 219 (523)
T 1oyw_A 169 RQRFPTLPFMALTATADDTTR--QDIVRLLGLNDPLIQIS--------SFDRPNIRYMLME------------------- 219 (523)
T ss_dssp HHHCTTSCEEEEESCCCHHHH--HHHHHHHTCCSCEEEEC--------CCCCTTEEEEEEE-------------------
T ss_pred HHhCCCCCEEEEeCCCCHHHH--HHHHHHhCCCCCeEEeC--------CCCCCceEEEEEe-------------------
Confidence 344456678999999975321 12333332 222111 111 111111110
Q ss_pred HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCcc
Q 010184 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLN 316 (516)
Q Consensus 242 ~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~ 316 (516)
...+...+..++.. .++.++||||+++..++.+++.| .+..+||++++++|.++++.|+++ +.+
T Consensus 220 -------~~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~ 288 (523)
T 1oyw_A 220 -------KFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQ 288 (523)
T ss_dssp -------CSSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCS
T ss_pred -------CCCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCe
Confidence 11222333333333 35789999999999999999999 356799999999999999999998 899
Q ss_pred EEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 317 vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|||||+++++|||+|++++||+++.+. |...|.||+||+||.|.
T Consensus 289 vlVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 289 IVVATVAFGMGINKPNVRFVVHFDIPR-NIESYYQETGRAGRDGL 332 (523)
T ss_dssp EEEECTTSCTTTCCTTCCEEEESSCCS-SHHHHHHHHTTSCTTSS
T ss_pred EEEEechhhCCCCccCccEEEEECCCC-CHHHHHHHhccccCCCC
Confidence 999999999999999999999998775 99999999999999883
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-34 Score=321.39 Aligned_cols=332 Identities=15% Similarity=0.084 Sum_probs=222.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 19 ~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
.....++|+|+|.+++..+..+. ++++++|||+|||+++..++.. .+.++||++|+++|+.||.++|.++++
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g~---~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-- 154 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-- 154 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHTC---EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS--
T ss_pred HHhCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC--
Confidence 33445789999999999987764 8999999999999998776644 367999999999999999999999876
Q ss_pred CCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc-
Q 010184 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK- 170 (516)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~- 170 (516)
.++.++|+... ....+|+|+|++++.....+ .......+++||+||+|++.+. .+..++..++
T Consensus 155 --~vglltGd~~~--~~~~~IvV~Tpe~L~~~L~~--------~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 155 --DVGLMTGDITI--NPDAGCLVMTTEILRSMLYR--------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp --CEEEECSSCEE--CTTCSEEEEEHHHHHHHHHH--------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred --CEEEEeCCCcc--CCCCCEEEEcHHHHHHHHHc--------CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 68888888653 34678999999988653211 0111257899999999999765 4555555554
Q ss_pred cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEecc-------------CCHHHHHHHHHhh
Q 010184 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-------------MTKEFFSEYLKKE 237 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~-------------~~~~~~~~~l~~~ 237 (516)
..++|+||||+.+..+....+....+....... ..+-..+......+.+ +....+.......
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~-----~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVY-----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEE-----ECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe-----cCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 457899999987643322223222231111000 0000111111111100 1111122111000
Q ss_pred hhHHHHH-----HhhhCcc--h--------HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------------
Q 010184 238 NSKKKQA-----LYVMNPN--K--------FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------------- 289 (516)
Q Consensus 238 ~~~~~~~-----l~~~~~~--k--------~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~------------- 289 (516)
....... .....+. | ...+..++..+....+.++||||+++..++.++..|.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 0000000 0000000 0 2234445544442445699999999999999988773
Q ss_pred -------------------------------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE
Q 010184 290 -------------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ 338 (516)
Q Consensus 290 -------------------------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~ 338 (516)
+.++||++++.+|..+++.|+++ .++|||||+++++|||+|++++||.
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G-~ikVLVAT~~la~GIDiP~~~vVI~ 456 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFT 456 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT-CCSEEEEEGGGGGSTTCCBSEEEES
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC-CCcEEEEehHhhccCCCCCceEEEe
Confidence 24589999999999999999997 9999999999999999999999998
Q ss_pred ----ecC----CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCC
Q 010184 339 ----ISS----HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (516)
Q Consensus 339 ----~~~----~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (516)
++. ++ |+..|.||+||+||.| .+..+.+|.+++.+
T Consensus 457 ~~~kfd~~~~rp~-s~~~y~Qr~GRAGR~G-----------~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 457 SVRKWDGQQFRWV-SGGEYIQMSGRAGRRG-----------LDDRGIVIMMIDEK 499 (1010)
T ss_dssp CSEEECSSCEEEC-CHHHHHHHHTTBCCTT-----------TCSSEEEEEEECSC
T ss_pred CCcccCCcCCccC-CHHHHhHhhhhcccCC-----------CCCceEEEEEECCC
Confidence 755 44 9999999999999999 44456677777755
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.7e-33 Score=323.46 Aligned_cols=315 Identities=17% Similarity=0.191 Sum_probs=219.7
Q ss_pred CCCCCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 20 LKPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
-...++++|+|.++++.++.. +++.++++++|||+|||++++.++. ..+++++|+||+++|+.||.++|.+++.
T Consensus 598 ~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~ 677 (1151)
T 2eyq_A 598 DSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFA 677 (1151)
T ss_dssp HTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHST
T ss_pred HhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhh
Confidence 345678999999999998863 4345899999999999999886553 3467999999999999999999998876
Q ss_pred CCCCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH
Q 010184 94 IQDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~ 164 (516)
..+..+..+++..... ..+..+|+|+|++.+... +...++++||+||+|++.......
T Consensus 678 ~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~-------------~~~~~l~lvIiDEaH~~g~~~~~~ 744 (1151)
T 2eyq_A 678 NWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSD-------------VKFKDLGLLIVDEEHRFGVRHKER 744 (1151)
T ss_dssp TTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSC-------------CCCSSEEEEEEESGGGSCHHHHHH
T ss_pred cCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCC-------------ccccccceEEEechHhcChHHHHH
Confidence 5556788877643211 135689999999887542 123678999999999987765544
Q ss_pred HHhhcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHH
Q 010184 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (516)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~ 244 (516)
+...-...++|+|||||........ +..+..+.... ..-...........+...
T Consensus 745 l~~l~~~~~vl~lSATp~p~~l~~~-~~~~~~~~~i~--------~~~~~r~~i~~~~~~~~~----------------- 798 (1151)
T 2eyq_A 745 IKAMRANVDILTLTATPIPRTLNMA-MSGMRDLSIIA--------TPPARRLAVKTFVREYDS----------------- 798 (1151)
T ss_dssp HHHHHTTSEEEEEESSCCCHHHHHH-HTTTSEEEECC--------CCCCBCBCEEEEEEECCH-----------------
T ss_pred HHHhcCCCCEEEEcCCCChhhHHHH-HhcCCCceEEe--------cCCCCccccEEEEecCCH-----------------
Confidence 3333344679999999975332100 00000000000 000000111111111111
Q ss_pred HhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-------CCceEecCCCHHHHHHHHHHHhcCCCccE
Q 010184 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNT 317 (516)
Q Consensus 245 l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~~~~~~v 317 (516)
..+...++... .++.+++|||+++..++.+++.| ++..+||++++.+|.++++.|+++ +++|
T Consensus 799 --------~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~V 867 (1151)
T 2eyq_A 799 --------MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNV 867 (1151)
T ss_dssp --------HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCE
T ss_pred --------HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcE
Confidence 12233334333 46789999999999998888877 355799999999999999999997 9999
Q ss_pred EEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 318 Lv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
||||+++++|+|+|++++||+++++..+..++.||+||+||.|. .+++|.++..+......+.+|..
T Consensus 868 LVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~-------------~g~~~ll~~~~~~l~~~~~~rl~ 934 (1151)
T 2eyq_A 868 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLE 934 (1151)
T ss_dssp EEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB-------------CEEEEEEECCGGGSCHHHHHHHH
T ss_pred EEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC-------------ceEEEEEECCccccCHHHHHHHH
Confidence 99999999999999999999886643489999999999999883 34556666654433333444443
No 33
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-33 Score=318.27 Aligned_cols=333 Identities=17% Similarity=0.105 Sum_probs=221.1
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
....++|+|+|.+++..+..+. ++++++|||+|||+++..++... ++++||++|+++|+.||.++|.++++
T Consensus 179 ~~~~f~ltp~Q~~AI~~i~~g~---dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~--- 252 (1108)
T 3l9o_A 179 RTYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG--- 252 (1108)
T ss_dssp SCCSSCCCHHHHHHHHHHTTTC---CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS---
T ss_pred HhCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC---
Confidence 3445689999999999876553 89999999999999998877554 68999999999999999999999876
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhhcc-c
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLTK-S 171 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~~~-~ 171 (516)
.++.++|+.. ..+..+|+|+|++.|.....+.. ..+ ..+++||+||||++.+.. +..++..++ .
T Consensus 253 -~VglltGd~~--~~~~~~IlV~Tpe~L~~~L~~~~------~~l--~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~ 321 (1108)
T 3l9o_A 253 -DVGLMTGDIT--INPDAGCLVMTTEILRSMLYRGS------EVM--REVAWVIFDEVHYMRDKERGVVWEETIILLPDK 321 (1108)
T ss_dssp -SEEEECSSCB--CCCSCSEEEEEHHHHHHHHHHCS------SHH--HHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTT
T ss_pred -CccEEeCccc--cCCCCCEEEeChHHHHHHHHcCc------ccc--ccCCEEEEhhhhhccccchHHHHHHHHHhcCCC
Confidence 6888888865 34568999999998866432211 012 457899999999998764 444555444 3
Q ss_pred ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEecc-------------CCHHHHHHHHHhhh
Q 010184 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-------------MTKEFFSEYLKKEN 238 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~-------------~~~~~~~~~l~~~~ 238 (516)
.++|+||||+.+..+....+....+....... ....-.+.+....... +....+........
T Consensus 322 ~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~-----~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~ 396 (1108)
T 3l9o_A 322 VRYVFLSATIPNAMEFAEWICKIHSQPCHIVY-----TNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASIS 396 (1108)
T ss_dssp SEEEEEECSCSSCHHHHHHHHHHTCSCEEEEE-----ECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-
T ss_pred ceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEe-----cCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHH
Confidence 57899999987654322222222221110000 0000011111111000 11111111110000
Q ss_pred h------------HHHHHHhhhCcch---HHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC--------------
Q 010184 239 S------------KKKQALYVMNPNK---FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------- 289 (516)
Q Consensus 239 ~------------~~~~~l~~~~~~k---~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------------- 289 (516)
. ............+ ...+..++..+....+.++||||+++..++.++..|.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~ 476 (1108)
T 3l9o_A 397 NQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALT 476 (1108)
T ss_dssp ----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHH
T ss_pred hhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 0 0000000000000 2344455555543556799999999999999998874
Q ss_pred ------------------------------CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe
Q 010184 290 ------------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI 339 (516)
Q Consensus 290 ------------------------------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~ 339 (516)
+.++||++++.+|..+++.|+++ .++|||||+++++|||+|++++||.+
T Consensus 477 ~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-~ikVLVAT~vla~GIDiP~v~~VI~~ 555 (1108)
T 3l9o_A 477 KIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTS 555 (1108)
T ss_dssp HHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-CCCEEEEESCCCSCCCC--CEEEESC
T ss_pred HHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC-CCeEEEECcHHhcCCCCCCceEEEec
Confidence 35699999999999999999998 99999999999999999999999964
Q ss_pred cCC-------CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 340 SSH-------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 340 ~~~-------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
..+ +-|+..|+||+||+||.| ....+.+|.+.+...
T Consensus 556 ~~~~d~~~~r~iS~~eyiQr~GRAGR~G-----------~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 556 VRKWDGQQFRWVSGGEYIQMSGRAGRRG-----------LDDRGIVIMMIDEKM 598 (1108)
T ss_dssp SEEESSSCEEECCHHHHHHHHHHSCCSS-----------SCSSEEEEEEECCCC
T ss_pred CcccCccccccCCHHHHHHhhcccCCCC-----------CCCceEEEEEecCCc
Confidence 321 237889999999999999 455677777777654
No 34
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.4e-35 Score=310.66 Aligned_cols=294 Identities=17% Similarity=0.172 Sum_probs=185.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.|+|+|.+++..++.+ ..+++++.+|||+|||++++.++... +.++||++|+++|+.||.+.|.+++......
T Consensus 141 ~p~~~Q~~ai~~i~~~-~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 141 XXXKIQEKALPLLLSN-PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp ECCCTTSSSHHHHHCS-SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred CcHHHHHHHHHHHHcC-CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 5899999999999876 22589999999999999988766432 3489999999999999999999987655444
Q ss_pred EEEEeCCc-cccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhcc-c
Q 010184 99 ICRFTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK-S 171 (516)
Q Consensus 99 v~~~~~~~-~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~~-~ 171 (516)
+....++. ........+|+|+|++++.....+ ..+....+++||+||||++.+. .+..++..+. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~--------~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~ 291 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKR--------RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 291 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTT
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHc--------CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcC
Confidence 44333332 222234689999999988553211 1122367899999999998762 3444555554 4
Q ss_pred ceEEEEeccCCCCccchhhhHhhhCC-ccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCc
Q 010184 172 HCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~~~gp-~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 250 (516)
.++++|||||...... ....+.+. ........... ........+.+.. ..
T Consensus 292 ~~~i~lSAT~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~-----------------------~~ 342 (508)
T 3fho_A 292 TQIVLFSATFSERVEK--YAERFAPNANEIRLKTEELS----VEGIKQLYMDCQS-----------------------EE 342 (508)
T ss_dssp CEEEEEESCCSTHHHH--HHHHHSTTCEEECCCCCC--------CCCCEEEEC-------------------------CH
T ss_pred CeEEEEeCCCCHHHHH--HHHHhcCCCeEEEeccccCC----cccceEEEEECCc-----------------------hH
Confidence 5679999999643222 11112211 11110000000 0011111111111 11
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.+...+..++... .+.++||||+++..++.++..| ++..+||+++..+|.++++.|+++ +.+|||+|++++
T Consensus 343 ~k~~~l~~ll~~~---~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~VLVaT~~l~ 418 (508)
T 3fho_A 343 HKYNVLVELYGLL---TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKVLVTTNVIA 418 (508)
T ss_dssp HHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCCCEECC---
T ss_pred HHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEeCChhh
Confidence 1223344444333 4679999999999999999998 366899999999999999999997 999999999999
Q ss_pred ccccccccCEEEEecCCC-----CCHHHHHHHhhcccccC
Q 010184 326 NSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAK 360 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~-----~s~~~~~Qr~GR~~R~g 360 (516)
+|+|+|++++||+++.++ .|...|.||+||++|.|
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g 458 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFG 458 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTSCCC---
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCC
Confidence 999999999999887662 48899999999999988
No 35
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8e-35 Score=308.05 Aligned_cols=297 Identities=17% Similarity=0.168 Sum_probs=110.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-C-----CCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----KSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~-----~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
..|+|+|.++++.++.+ .+++.++.+|||+|||++++.++... . .++|||+|+++|+.||.+.+.++... +.
T Consensus 113 ~~p~~~Q~~ai~~il~~-~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp CSCCHHHHHHHHHHTSB-SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCHHHHHHHHHHHcC-CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 46899999999998875 22589999999999999988776542 1 27999999999999999998887643 34
Q ss_pred CcEEEEeCCccc--cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-hhH----HHHHhhc
Q 010184 97 DQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMF----RKVISLT 169 (516)
Q Consensus 97 ~~v~~~~~~~~~--~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~----~~~l~~~ 169 (516)
..+....++... ......+|+|+|++.+.....+. ..+....+++||+||+|++.. ..+ ..++..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 456655554321 12335689999999885432110 112225689999999998865 333 2333433
Q ss_pred c-cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEecc-CCHHHHHHHHHhhhhHHHHHHhh
Q 010184 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-MTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~-~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
. ..+++++||||...... .....+. ......+... ........+ .....
T Consensus 265 ~~~~~~i~~SAT~~~~~~~--~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~---------~~~~~ 315 (479)
T 3fmp_B 265 PRNCQMLLFSATFEDSVWK--FAQKVVP------------------DPNVIKLKREEETLDTIKQY---------YVLCS 315 (479)
T ss_dssp CTTSEEEEEESCCCHHHHH--HHHHHSS------------------SEEEEEEC--------------------------
T ss_pred CccceEEEEeCCCCHHHHH--HHHHHcC------------------CCeEEeccccccCcCCceEE---------EEEeC
Confidence 3 34689999999743221 1111111 1111100000 000000000 00111
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
....|...+..++... .+.++||||+++..++.++..| ++.++||++++.+|..+++.|+++ ..+|||+|+
T Consensus 316 ~~~~~~~~l~~~~~~~---~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iLv~T~ 391 (479)
T 3fmp_B 316 SRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhc---cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEEEEcc
Confidence 1123444444444433 3678999999999999999998 366899999999999999999998 999999999
Q ss_pred CCcccccccccCEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~-----~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|+|+|++++||+++.++ .+...|+||+||+||.|.
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~ 435 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 435 (479)
T ss_dssp --------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCC
Confidence 999999999999999997764 356899999999999883
No 36
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.8e-34 Score=312.64 Aligned_cols=290 Identities=16% Similarity=0.156 Sum_probs=200.4
Q ss_pred CCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
.++|+|+|.++++.++.. +...+.++.+|||+|||++++.++... +.+++|++|+++|+.||.+.|.+++...+
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 458999999999988764 333588999999999999998877543 68999999999999999999999986556
Q ss_pred CcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHh
Q 010184 97 DQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~ 167 (516)
..+..++|+.... ..+..+|+|+|++.+.. .+...++++||+||+|++.......+..
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-------------~~~~~~l~lVVIDEaHr~g~~qr~~l~~ 512 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------------DVHFKNLGLVIIDEQHRFGVKQREALMN 512 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------------CCCCSCCCEEEEESCCCC-----CCCCS
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-------------hhhccCCceEEecccchhhHHHHHHHHH
Confidence 6888888875432 13568999999987743 2223678999999999986543322222
Q ss_pred hcccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 168 LTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 168 ~~~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
.....++++|||||....-. ...+|..-... ...+ ..+ ..++ .....+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~----~~~~g~~~~s~-i~~~-p~~-r~~i--~~~~~~----------------------- 560 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMA----LAFYGDLDVTV-IDEM-PPG-RKEV--QTMLVP----------------------- 560 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHH----HHHTCCSSCEE-ECCC-CSS-CCCC--EECCCC-----------------------
T ss_pred hCCCCCEEEEeCCCCHHHHH----HHHhCCcceee-eecc-CCC-Ccce--EEEEec-----------------------
Confidence 22346799999999653211 11222110000 0000 000 0011 111110
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHH--------HHHHHHHHh--------CCceEecCCCHHHHHHHHHHHhc
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL--------RKPMIYGATSHVERTKILQAFKC 311 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~--------~~~~l~~~L--------~~~~i~g~~~~~eR~~~l~~F~~ 311 (516)
..+...+...+.... ..+.+++|||+.++ .++.+++.| ++..+||++++.+|.++++.|++
T Consensus 561 --~~~~~~l~~~i~~~l-~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~ 637 (780)
T 1gm5_A 561 --MDRVNEVYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE 637 (780)
T ss_dssp --SSTHHHHHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT
T ss_pred --cchHHHHHHHHHHHH-hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC
Confidence 111111222222222 46789999998654 355555555 34579999999999999999999
Q ss_pred CCCccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 312 ~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+ +++|||||+++++|+|+|++++||+++++..+..++.||+||+||.|.
T Consensus 638 G-~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~ 686 (780)
T 1gm5_A 638 G-RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQ 686 (780)
T ss_dssp T-SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSST
T ss_pred C-CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCC
Confidence 8 999999999999999999999999997764478899999999999884
No 37
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=2.2e-32 Score=308.57 Aligned_cols=322 Identities=15% Similarity=0.160 Sum_probs=220.3
Q ss_pred CCCCHHHHHHHHHHHhC-----------CCCcccEEEecCCCcHHHHHHHHHHhcC-----CCEEEEEeChhhHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQ 87 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~-----------~~~~~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~e 87 (516)
..|||||.+|+++++.. ...++++++++||+|||++++.++..+. .++|||||+++|+.||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 56999999999988752 1125799999999999999977664432 5899999999999999999
Q ss_pred HHHhhCCCCCcEEEEeCCcc----ccc-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-h
Q 010184 88 FKLWSTIQDDQICRFTSDSK----ERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M 161 (516)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~----~~~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~ 161 (516)
|..|.... + ..+... ..+ ....+|+|+|++.+........ ....+ ..+.+||+||||++... .
T Consensus 350 f~~f~~~~---v--~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~----~~~~~--~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 350 YQRFSPDS---V--NGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES----DLPVY--NQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHTTSTTC---S--SSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC----CCGGG--GSCEEEEEESCCTTHHHHH
T ss_pred HHHhcccc---c--ccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc----chhcc--ccccEEEEEccchhcchHH
Confidence 99985321 1 111111 112 2458899999999865311000 00112 36789999999998864 4
Q ss_pred HHHHHhhcccceEEEEeccCCCCccc--hhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhh
Q 010184 162 FRKVISLTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (516)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~~~--~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~ 239 (516)
+..+...++..++|||||||.+.++. ......+||+.++.+++.++++.|++.++.+.... ..+.+...-. ....
T Consensus 419 ~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~--v~~~~~~~~~-e~d~ 495 (1038)
T 2w00_A 419 QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYND--VRPQFKSLET-ETDE 495 (1038)
T ss_dssp HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECC--CCGGGHHHHT-CCCH
T ss_pred HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEe--ccchhhhccc-cccH
Confidence 66677788888999999999987642 12466789999999999999999999987643221 1111100000 0000
Q ss_pred HHH----HHHhhhCcchHH-HHHHHHHHHhhc--------CCCeEEEEeccHHHHHHHHHHhC-----------------
Q 010184 240 KKK----QALYVMNPNKFR-ACEFLIRFHEQQ--------RGDKIIVFADNLFALTEYAMKLR----------------- 289 (516)
Q Consensus 240 ~~~----~~l~~~~~~k~~-~~~~ll~~~~~~--------~~~k~iVF~~~~~~~~~l~~~L~----------------- 289 (516)
... ......++.+.. ++..++...... .+.++||||+++.++..++..|.
T Consensus 496 ~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k 575 (1038)
T 2w00_A 496 KKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLR 575 (1038)
T ss_dssp HHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCC
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCc
Confidence 000 000112333333 345555543211 35689999999999999888772
Q ss_pred Cc-eEecC----------C----------CH-----------------------------HHHHHHHHHHhcCCCccEEE
Q 010184 290 KP-MIYGA----------T----------SH-----------------------------VERTKILQAFKCSRDLNTIF 319 (516)
Q Consensus 290 ~~-~i~g~----------~----------~~-----------------------------~eR~~~l~~F~~~~~~~vLv 319 (516)
+. +++|+ + ++ .+|..++++|+++ ++++||
T Consensus 576 ~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-~i~ILI 654 (1038)
T 2w00_A 576 IATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-DIDLLI 654 (1038)
T ss_dssp EEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-SSSEEE
T ss_pred EEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC-CCeEEE
Confidence 11 24432 1 21 2488899999997 999999
Q ss_pred EeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCC
Q 010184 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362 (516)
Q Consensus 320 ~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~ 362 (516)
+|+++.+|+|+|.+++++ ++.+. +...++|++||++|.+++
T Consensus 655 vvd~lltGfDiP~l~tly-lDkpl-~~~~liQaIGRtnR~~~~ 695 (1038)
T 2w00_A 655 VVGMFLTGFDAPTLNTLF-VDKNL-RYHGLMQAFSRTNRIYDA 695 (1038)
T ss_dssp ESSTTSSSCCCTTEEEEE-EESCC-CHHHHHHHHHTTCCCCCT
T ss_pred EcchHHhCcCcccccEEE-EccCC-CccceeehhhccCcCCCC
Confidence 999999999999996655 45665 889999999999999963
No 38
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=2.2e-32 Score=302.37 Aligned_cols=310 Identities=18% Similarity=0.221 Sum_probs=213.1
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
+|+|+|.++++.+..+ +++++++|||+|||+++..++.. .+++++|++|+++|+.||.++++++... +..+..
T Consensus 25 ~l~~~Q~~~i~~i~~~---~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~-g~~v~~ 100 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSG---KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGI 100 (702)
T ss_dssp CCCCCCHHHHHHHTTC---SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEE
T ss_pred CCCHHHHHHHHHHhCC---CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc-CCEEEE
Confidence 7999999999996654 49999999999999999776642 3689999999999999999999766433 457888
Q ss_pred EeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhc----cc
Q 010184 102 FTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----KS 171 (516)
Q Consensus 102 ~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~----~~ 171 (516)
.+|+.... ..+..+|+|+|++++.....+.. ..+ ..+++||+||+|.+... .+..++..+ +.
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~------~~l--~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 101 STGDYESRDEHLGDCDIIVTTSEKADSLIRNRA------SWI--KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp ECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC------SGG--GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EeCCCCcchhhccCCCEEEECHHHHHHHHHcCh------hHH--hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 88875432 13468999999998855322210 112 46789999999998753 333343333 35
Q ss_pred ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcc
Q 010184 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ 251 (516)
.++++||||+.+ ..++..+++...+...+. -.++.......+. . .+. ..... ....-.
T Consensus 173 ~~ii~lSATl~n----~~~~~~~l~~~~~~~~~r-------~~~l~~~~~~~~~---~--~~~-~~~~~-----~~~~~~ 230 (702)
T 2p6r_A 173 LRVIGLSATAPN----VTEIAEWLDADYYVSDWR-------PVPLVEGVLCEGT---L--ELF-DGAFS-----TSRRVK 230 (702)
T ss_dssp CEEEEEECCCTT----HHHHHHHTTCEEEECCCC-------SSCEEEEEECSSE---E--EEE-ETTEE-----EEEECC
T ss_pred ceEEEECCCcCC----HHHHHHHhCCCcccCCCC-------CccceEEEeeCCe---e--ecc-Ccchh-----hhhhhh
Confidence 678999999974 234455566443322110 0111110000000 0 000 00000 000000
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----------------------------------CCceEecC
Q 010184 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----------------------------------RKPMIYGA 296 (516)
Q Consensus 252 k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----------------------------------~~~~i~g~ 296 (516)
+...+..+ + ..+.++||||+++..++.++..| ++.++||+
T Consensus 231 ~~~~~~~~---~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 231 FEELVEEC---V--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp HHHHHHHH---H--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred HHHHHHHH---H--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 12222222 2 35789999999999988877655 36789999
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ec---CCCCCHHHHHHHhhcccccCCCccccccC
Q 010184 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS---SHAGSRRQEAQRLGRILRAKGKLEDRMAG 369 (516)
Q Consensus 297 ~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~---~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~ 369 (516)
+++++|..+++.|+++ .++|||||+++++|+|+|++++||. ++ .+ .|...+.||+||+||.|
T Consensus 306 l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~-~s~~~~~Qr~GRaGR~g--------- 374 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRG-NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR-IKVSEYKQMAGRAGRPG--------- 374 (702)
T ss_dssp SCHHHHHHHHHHHHTT-SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE-CCHHHHHHHHTTBSCTT---------
T ss_pred CCHHHHHHHHHHHHCC-CCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCc-CCHHHHHHHhhhcCCCC---------
Confidence 9999999999999998 9999999999999999999999997 43 34 49999999999999998
Q ss_pred CCCceeEEEEEEEcCCc
Q 010184 370 GKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 370 ~~~~~~~~~y~lv~~~t 386 (516)
.+..+.+|.+.+...
T Consensus 375 --~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 375 --MDERGEAIIIVGKRD 389 (702)
T ss_dssp --TCSCEEEEEECCGGG
T ss_pred --CCCCceEEEEecCcc
Confidence 444567777776554
No 39
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-31 Score=301.72 Aligned_cols=335 Identities=15% Similarity=0.093 Sum_probs=217.5
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
....++|+|+|.+++..++.+. ++++++|||+|||++++.++.. .+.++||++|+++|+.||.++|.++++ +
T Consensus 34 ~~~~f~l~~~Q~~aI~~il~g~---~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 34 RSWPFELDTFQKEAVYHLEQGD---SVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCSSCCCHHHHHHHHHHHTTC---EEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred HhCCCCCCHHHHHHHHHHHcCC---CEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 3455789999999999988764 8999999999999987776643 356799999999999999999999753 4
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhccc-
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS- 171 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~~- 171 (516)
..+..++|+... ....+|+|+|++.+.....+ .......+++||+||||++.+. .+..++..++.
T Consensus 109 ~~v~~l~G~~~~--~~~~~IlV~Tpe~L~~~l~~--------~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 109 VNIGLITGDVQI--NPDANCLIMTTEILRSMLYR--------GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp CCEEEECSSCEE--CTTSSEEEEEHHHHHHHHHH--------TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred CeEEEEeCCCcc--CCCCCEEEECHHHHHHHHHh--------CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 578888887653 45689999999988553211 1111256899999999998754 57777777654
Q ss_pred ceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEE--------Eec---cCCHHHHHHHHHhhh--
Q 010184 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE--------VWC---PMTKEFFSEYLKKEN-- 238 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~--------v~~---~~~~~~~~~~l~~~~-- 238 (516)
.++|+|||||.+..+....+....+...+... ..+--.+..... +.- .+....+........
T Consensus 179 v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~-----~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (997)
T 4a4z_A 179 VKFILLSATVPNTYEFANWIGRTKQKNIYVIS-----TPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGE 253 (997)
T ss_dssp CEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE-----CSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC--
T ss_pred CCEEEEcCCCCChHHHHHHHhcccCCceEEEe-----cCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcc
Confidence 57899999997544322222111111111000 000001111000 000 011111111000000
Q ss_pred h--------------------------H---------------------------H-HHHHhh--hCcchHHHHHHHHHH
Q 010184 239 S--------------------------K---------------------------K-KQALYV--MNPNKFRACEFLIRF 262 (516)
Q Consensus 239 ~--------------------------~---------------------------~-~~~l~~--~~~~k~~~~~~ll~~ 262 (516)
. + . ...... ....+ +..++..
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~li~~ 330 (997)
T 4a4z_A 254 SAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKT---WPEIVNY 330 (997)
T ss_dssp ---------------------------------------------------------------CCCCTTH---HHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhH---HHHHHHH
Confidence 0 0 0 000000 11222 3344444
Q ss_pred HhhcCCCeEEEEeccHHHHHHHHHHhC--------------------------------------------CceEecCCC
Q 010184 263 HEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------------KPMIYGATS 298 (516)
Q Consensus 263 ~~~~~~~k~iVF~~~~~~~~~l~~~L~--------------------------------------------~~~i~g~~~ 298 (516)
+......++||||.++..++.++..|. +..+||+++
T Consensus 331 l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~ 410 (997)
T 4a4z_A 331 LRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL 410 (997)
T ss_dssp HHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC
Confidence 443456799999999999999998883 357899999
Q ss_pred HHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecCC-------CCCHHHHHHHhhcccccCCCccccccCCC
Q 010184 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH-------AGSRRQEAQRLGRILRAKGKLEDRMAGGK 371 (516)
Q Consensus 299 ~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~-------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~ 371 (516)
+.+|..+++.|+++ .++|||+|+++++|||+|+..+|+...+. +-|+..|.|++||+||.|
T Consensus 411 ~~~R~~v~~~F~~G-~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G----------- 478 (997)
T 4a4z_A 411 PIVKELIEILFSKG-FIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRG----------- 478 (997)
T ss_dssp HHHHHHHHHHHHTT-CCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTT-----------
T ss_pred HHHHHHHHHHHHCC-CCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCC-----------
Confidence 99999999999998 99999999999999999995555521111 118999999999999999
Q ss_pred CceeEEEEEEEcCCchhh
Q 010184 372 EEYNAFFYSLVSTDTQEM 389 (516)
Q Consensus 372 ~~~~~~~y~lv~~~t~e~ 389 (516)
....+.+|.+...+..+.
T Consensus 479 ~~~~G~vi~l~~~~~~~~ 496 (997)
T 4a4z_A 479 LDSTGTVIVMAYNSPLSI 496 (997)
T ss_dssp TCSSEEEEEECCSSCCCH
T ss_pred CCcceEEEEecCCCcchH
Confidence 444566666665444443
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=3.3e-32 Score=301.85 Aligned_cols=312 Identities=15% Similarity=0.187 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
+|+|+|.+++..++..+ ++.++++|||+|||+++..++. ..+++++|++|+++|+.||.++++++... +..+.
T Consensus 23 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v~ 99 (720)
T 2zj8_A 23 SFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRVA 99 (720)
T ss_dssp BCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCEE
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEEE
Confidence 79999999999844433 4999999999999999866553 23679999999999999999999766433 45788
Q ss_pred EEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc-cce
Q 010184 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SHC 173 (516)
Q Consensus 101 ~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~-~~~ 173 (516)
.++|+.... ..+..+|+|+|++++.....+ ....-.++++||+||+|++... .+..++..++ ..+
T Consensus 100 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~--------~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (720)
T 2zj8_A 100 MATGDYDSKDEWLGKYDIIIATAEKFDSLLRH--------GSSWIKDVKILVADEIHLIGSRDRGATLEVILAHMLGKAQ 171 (720)
T ss_dssp EECSCSSCCCGGGGGCSEEEECHHHHHHHHHH--------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTBE
T ss_pred EecCCCCccccccCCCCEEEECHHHHHHHHHc--------ChhhhhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCCe
Confidence 888864422 234689999999988553211 0000246799999999998753 4444555554 567
Q ss_pred EEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchH
Q 010184 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (516)
Q Consensus 174 ~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~ 253 (516)
+++||||+.+. .++..+++...+...+. -.+........+. ..|. .... .....+.
T Consensus 172 ii~lSATl~n~----~~~~~~l~~~~~~~~~r-------p~~l~~~~~~~~~-----~~~~-~~~~-------~~~~~~~ 227 (720)
T 2zj8_A 172 IIGLSATIGNP----EELAEWLNAELIVSDWR-------PVKLRRGVFYQGF-----VTWE-DGSI-------DRFSSWE 227 (720)
T ss_dssp EEEEECCCSCH----HHHHHHTTEEEEECCCC-------SSEEEEEEEETTE-----EEET-TSCE-------EECSSTT
T ss_pred EEEEcCCcCCH----HHHHHHhCCcccCCCCC-------CCcceEEEEeCCe-----eecc-ccch-------hhhhHHH
Confidence 89999999742 23445555433221110 0111110000000 0000 0000 0012222
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC--------------------------------------CceEec
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------KPMIYG 295 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~--------------------------------------~~~i~g 295 (516)
..+..++ .++.++||||+++..++.++..|. +.++||
T Consensus 228 ~~~~~~~-----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~ 302 (720)
T 2zj8_A 228 ELVYDAI-----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHA 302 (720)
T ss_dssp HHHHHHH-----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHH-----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecC
Confidence 3333332 356899999999999988877762 557999
Q ss_pred CCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ec---CCCCCHHHHHHHhhcccccCCCcccccc
Q 010184 296 ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS---SHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (516)
Q Consensus 296 ~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~---~~~~s~~~~~Qr~GR~~R~g~~~~~~~~ 368 (516)
+++..+|..+++.|+++ .++|||||+++++|+|+|++++||. ++ ..+.|...+.||+||+||.|
T Consensus 303 ~l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g-------- 373 (720)
T 2zj8_A 303 GLGRDERVLVEENFRKG-IIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPK-------- 373 (720)
T ss_dssp TSCHHHHHHHHHHHHTT-SSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTT--------
T ss_pred CCCHHHHHHHHHHHHCC-CCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCC--------
Confidence 99999999999999998 9999999999999999999999997 43 11249999999999999998
Q ss_pred CCCCceeEEEEEEEcCCchh
Q 010184 369 GGKEEYNAFFYSLVSTDTQE 388 (516)
Q Consensus 369 ~~~~~~~~~~y~lv~~~t~e 388 (516)
.+.....|.+.+.+..+
T Consensus 374 ---~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 374 ---YDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp ---TCSEEEEEEECSSSCHH
T ss_pred ---CCCCceEEEEecCccHH
Confidence 45566777777766533
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.98 E-value=4.7e-31 Score=292.51 Aligned_cols=317 Identities=16% Similarity=0.206 Sum_probs=212.1
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
+|+|+|.+++..++..+ ++.++++|||+|||+++..++. ..+++++|++|+++|+.||.++++++... +..+.
T Consensus 30 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~-g~~v~ 106 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELI-GFKVA 106 (715)
T ss_dssp BCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGG-TCCEE
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcC-CCEEE
Confidence 89999999999844444 4999999999999999976663 24679999999999999999999765432 45788
Q ss_pred EEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcccceE
Q 010184 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCK 174 (516)
Q Consensus 101 ~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~~~~~ 174 (516)
..+|+.... ..+..+|+|+|++++.....+. ...+ ..+++||+||+|.+.+. .+..++..++..++
T Consensus 107 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~------~~~l--~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 107 MTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR------PEWL--NEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp ECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHC------CGGG--GGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCC------hhHh--hccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 888764321 1236899999999885532110 0112 56799999999998653 44555555667789
Q ss_pred EEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHH-HHHHhhhhHHHHHHhhhCcchH
Q 010184 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS-EYLKKENSKKKQALYVMNPNKF 253 (516)
Q Consensus 175 l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~-~~l~~~~~~~~~~l~~~~~~k~ 253 (516)
++||||+.+. .++..+++...+...+ -..++.......+.....+. .|. .... ........+
T Consensus 179 i~lSATl~n~----~~~~~~l~~~~~~~~~-------r~~~l~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~- 241 (715)
T 2va8_A 179 LALSATISNY----KQIAKWLGAEPVATNW-------RPVPLIEGVIYPERKKKEYNVIFK-DNTT----KKVHGDDAI- 241 (715)
T ss_dssp EEEESCCTTH----HHHHHHHTCEEEECCC-------CSSCEEEEEEEECSSTTEEEEEET-TSCE----EEEESSSHH-
T ss_pred EEEcCCCCCH----HHHHHHhCCCccCCCC-------CCCCceEEEEecCCcccceeeecC-cchh----hhcccchHH-
Confidence 9999999742 2344555544332111 01111111100000000000 000 0000 000001112
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----------------------------------------Cce
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------------------------------------KPM 292 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----------------------------------------~~~ 292 (516)
+..+.+.+ ..+.++||||+++..++.++..|. +.+
T Consensus 242 --~~~~~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 242 --IAYTLDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp --HHHHHHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred --HHHHHHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 22223333 357899999999999988887762 457
Q ss_pred EecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ec-------CCCCCHHHHHHHhhcccccCC
Q 010184 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS-------SHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 293 i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~-------~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+||+++..+|..+++.|+++ .++|||||+++++|+|+|++++||. ++ .+ .|...+.||+||+||.|
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~-~s~~~~~Qr~GRaGR~g- 394 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQR-KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDE-IPIMEYKQMSGRAGRPG- 394 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTT-CSCEEEECGGGGGSSCCCBSEEEECCC---------------CHHHHHHHHTTBCCTT-
T ss_pred ECCCCCHHHHHHHHHHHHcC-CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCc-CCHHHHHHHhhhcCCCC-
Confidence 99999999999999999998 9999999999999999999999997 65 34 49999999999999998
Q ss_pred CccccccCCCCceeEEEEEEEcCCc
Q 010184 362 KLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 362 ~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
.+..+..|.+.+...
T Consensus 395 ----------~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 395 ----------FDQIGESIVVVRDKE 409 (715)
T ss_dssp ----------TCSCEEEEEECSCGG
T ss_pred ----------CCCCceEEEEeCCch
Confidence 444566677766543
No 42
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=2e-29 Score=288.20 Aligned_cols=262 Identities=18% Similarity=0.167 Sum_probs=185.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.++|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+.++|||+|+++|+.|+.+.|.++. ..+..+
T Consensus 76 gf~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v 151 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKI 151 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCE
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeE
Confidence 4589999999999988764 8999999999999988776644 45789999999999999999999975 455678
Q ss_pred EEEeCCcccc--------c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----------
Q 010184 100 CRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------- 160 (516)
Q Consensus 100 ~~~~~~~~~~--------~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---------- 160 (516)
..++|+.... + .+..+|+|+|++.+... +..+....+++||+||||++...
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~----------l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS----------HHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH----------HHhhcccCcCEEEEeCCCccccccccchhhhHh
Confidence 8888876431 1 24589999999998553 23344578999999999986531
Q ss_pred -----h-HHHHHhhcc------------cceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEe
Q 010184 161 -----M-FRKVISLTK------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (516)
Q Consensus 161 -----~-~~~~l~~~~------------~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~ 222 (516)
. ...++..++ ..+.+++||||.........+...++..+... .....++....+.
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~-------~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-------VSVARNITHVRIS 294 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBC-------CCCCCCEEEEEES
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccC-------CCCcCCceeEEEe
Confidence 1 445555443 45789999996543322112222222111000 0011111111111
Q ss_pred ccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----Cc-eEecC
Q 010184 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MIYGA 296 (516)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~-~i~g~ 296 (516)
+ .|...+..++... +.++||||+++..++.++..|. +. .+||
T Consensus 295 ~---------------------------~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg- 342 (1104)
T 4ddu_A 295 S---------------------------RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE- 342 (1104)
T ss_dssp C---------------------------CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-
T ss_pred c---------------------------CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-
Confidence 1 1223344444432 4799999999999999999982 44 6677
Q ss_pred CCHHHHHHHHHHHhcCCCccEEEE----eCCCcccccccc-cCEEEEecCCC
Q 010184 297 TSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA 343 (516)
Q Consensus 297 ~~~~eR~~~l~~F~~~~~~~vLv~----t~~~~~GlDlp~-a~~vI~~~~~~ 343 (516)
+|.+ ++.|+++ +++|||| |+++++|||+|+ +++||+++.|.
T Consensus 343 ----~rr~-l~~F~~G-~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 343 ----FEKN-FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ----HHHH-HHHHHHT-SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ----cHHH-HHHHHCC-CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 2555 9999998 9999999 999999999999 99999997763
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=1.1e-28 Score=291.55 Aligned_cols=297 Identities=17% Similarity=0.201 Sum_probs=202.9
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc--------------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
+|.+.|.++++.++..+ ++.++++|||+|||++|..++.+. +.++|+|+|+++|+.|..++|.+
T Consensus 79 ~ln~iQs~~~~~al~~~--~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~~ 156 (1724)
T 4f92_B 79 TLNRIQSKLYRAALETD--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFGK 156 (1724)
T ss_dssp BCCHHHHHTHHHHHTCC--CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcCC--CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHHH
Confidence 58899999999999876 499999999999999998776321 35799999999999999999998
Q ss_pred hhCCCCCcEEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHH
Q 010184 91 WSTIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKV 165 (516)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~ 165 (516)
.+.-.+..|..++|+.... ....++|+||||+.+....++..+. ..+ ...++||+||+|.+.++ .+..+
T Consensus 157 ~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~----~~l--~~v~~vIiDEvH~l~d~RG~~lE~~ 230 (1724)
T 4f92_B 157 RLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER----TYT--QLVRLIILDEIHLLHDDRGPVLEAL 230 (1724)
T ss_dssp HHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTH----HHH--TTEEEEEETTGGGGGSTTHHHHHHH
T ss_pred HHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccc----hhh--cCcCEEEEecchhcCCccHHHHHHH
Confidence 7766667899999875421 2245899999999886655443221 223 56899999999988753 22222
Q ss_pred Hhh-------c-ccceEEEEeccCCCCccchhhhHhhhCCc------cccccHHHHHhCCCcccceeEEEeccCCHH-HH
Q 010184 166 ISL-------T-KSHCKLGLTATLVREDERITDLNFLIGPK------LYEANWLDLVKGGFIANVQCAEVWCPMTKE-FF 230 (516)
Q Consensus 166 l~~-------~-~~~~~l~LTATp~~~~~~~~~l~~~~gp~------~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~-~~ 230 (516)
+.. . ...++|+||||..+.. ++..+++.. .+..++ .|+......+..... ..
T Consensus 231 l~rl~~~~~~~~~~~riI~LSATl~N~~----dvA~wL~~~~~~~~~~~~~~~---------RPvpL~~~~~~~~~~~~~ 297 (1724)
T 4f92_B 231 VARAIRNIEMTQEDVRLIGLSATLPNYE----DVATFLRVDPAKGLFYFDNSF---------RPVPLEQTYVGITEKKAI 297 (1724)
T ss_dssp HHHHHHHHHHHTCCCEEEEEECSCTTHH----HHHHHTTCCHHHHEEECCGGG---------CSSCEEEECCEECCCCHH
T ss_pred HHHHHHHHHhCCCCCcEEEEecccCCHH----HHHHHhCCCCCCCeEEECCCC---------ccCccEEEEeccCCcchh
Confidence 221 1 2347899999986432 233344321 111110 122222111111100 00
Q ss_pred HHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----------------------
Q 010184 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------- 288 (516)
Q Consensus 231 ~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------------------- 288 (516)
..+. .+ ...+...+..+ ..++.+||||+++..++.+|..|
T Consensus 298 ~~~~------------~~----~~~~~~~v~~~--~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~ 359 (1724)
T 4f92_B 298 KRFQ------------IM----NEIVYEKIMEH--AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTE 359 (1724)
T ss_dssp HHHH------------HH----HHHHHHHHTTC--CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSS
T ss_pred hhhH------------HH----HHHHHHHHHHH--hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHH
Confidence 0000 00 01122222222 34678999999987776666554
Q ss_pred --------------------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----ecCC--
Q 010184 289 --------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISSH-- 342 (516)
Q Consensus 289 --------------------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----~~~~-- 342 (516)
++.++||++++.+|..+.+.|++| .++|||||.+++.|+|+|+.++||. +++.
T Consensus 360 ~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G-~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~ 438 (1724)
T 4f92_B 360 VLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKG 438 (1724)
T ss_dssp HHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT-CCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTT
T ss_pred HHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC-CCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCC
Confidence 134689999999999999999998 9999999999999999999888884 3322
Q ss_pred ---CCCHHHHHHHhhcccccCC
Q 010184 343 ---AGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 343 ---~~s~~~~~Qr~GR~~R~g~ 361 (516)
.-|..+|.||+||+||+|.
T Consensus 439 ~~~~ls~~~~~Qm~GRAGR~g~ 460 (1724)
T 4f92_B 439 RWTELGALDILQMLGRAGRPQY 460 (1724)
T ss_dssp EEEECCHHHHHHHHTTBSCTTT
T ss_pred CcccCCHHHHHHhhhhccCCCC
Confidence 1289999999999999984
No 44
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=8.7e-28 Score=283.86 Aligned_cols=300 Identities=15% Similarity=0.197 Sum_probs=202.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhC-CCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~-~~~~~ 98 (516)
.+.|.|.+++..++..+ .+.++++|||+|||+++..++.+. ++++|+++|+++|+.|..++|.+.++ ..+..
T Consensus 926 ~fnpiQ~q~~~~l~~~~--~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~ 1003 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003 (1724)
T ss_dssp BCCHHHHHHHHHHHSCC--SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE
Confidence 48899999999999876 489999999999999998776432 56899999999999999999986543 34567
Q ss_pred EEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhc----
Q 010184 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT---- 169 (516)
Q Consensus 99 v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~---- 169 (516)
|..++|+.... .....+|+|+||+.+....++... ...+ .+.++||+||+|.+... .+..++..+
T Consensus 1004 V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~----~~~l--~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~ 1077 (1724)
T 4f92_B 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ----RKNV--QNINLFVVDEVHLIGGENGPVLEVICSRMRYIS 1077 (1724)
T ss_dssp EEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTT----CHHH--HSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCccc----cccc--ceeeEEEeechhhcCCCCCccHHHHHHHHHHHH
Confidence 88889875432 124578999999987554332211 1222 46789999999998764 333333322
Q ss_pred ----ccceEEEEeccCCCCccchhhhHhhhCCcc---ccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHH
Q 010184 170 ----KSHCKLGLTATLVREDERITDLNFLIGPKL---YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (516)
Q Consensus 170 ----~~~~~l~LTATp~~~~~~~~~l~~~~gp~~---~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~ 242 (516)
+..+.++||||..+.. ++..+++... +..... . --.+.+......+.... ...+.
T Consensus 1078 ~~~~~~~riI~lSATl~N~~----dla~WL~~~~~~~~~~~~~--~---RPvpL~~~i~~~~~~~~-~~~~~-------- 1139 (1724)
T 4f92_B 1078 SQIERPIRIVALSSSLSNAK----DVAHWLGCSATSTFNFHPN--V---RPVPLELHIQGFNISHT-QTRLL-------- 1139 (1724)
T ss_dssp HTTSSCCEEEEEESCBTTHH----HHHHHHTCCSTTEEECCGG--G---CSSCEEEEEEEECCCSH-HHHHH--------
T ss_pred hhcCCCceEEEEeCCCCCHH----HHHHHhCCCCCCeEEeCCC--C---CCCCeEEEEEeccCCCc-hhhhh--------
Confidence 2347899999986432 3444444221 110000 0 00111111111111111 00000
Q ss_pred HHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----------------------------------
Q 010184 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------------------- 288 (516)
Q Consensus 243 ~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------------------------------- 288 (516)
.++ ..+...+..+ .++..+||||+++..++.+|..|
T Consensus 1140 ----~~~----~~~~~~i~~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1140 ----SMA----KPVYHAITKH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp ----TTH----HHHHHHHHHH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred ----hhc----chHHHHHHHh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 000 1122233333 46778999999999888776544
Q ss_pred -----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe----cCC-----CCCHHHHHHHhh
Q 010184 289 -----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI----SSH-----AGSRRQEAQRLG 354 (516)
Q Consensus 289 -----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~----~~~-----~~s~~~~~Qr~G 354 (516)
++.++||++++.+|..+.+.|++| .++|||||++++.|+|+|+..+||.. +.. .-+..+|.|++|
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~G 1288 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSG-AIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVG 1288 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHT
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhc
Confidence 245799999999999999999998 99999999999999999988888742 111 127899999999
Q ss_pred cccccCC
Q 010184 355 RILRAKG 361 (516)
Q Consensus 355 R~~R~g~ 361 (516)
|+||+|.
T Consensus 1289 RAGR~g~ 1295 (1724)
T 4f92_B 1289 HANRPLQ 1295 (1724)
T ss_dssp TBCCTTT
T ss_pred cccCCCC
Confidence 9999994
No 45
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.95 E-value=1.2e-27 Score=273.49 Aligned_cols=259 Identities=14% Similarity=0.200 Sum_probs=176.6
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCC--
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD-- 97 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~-- 97 (516)
.+.+ |+|.++++.++.+. ++++++|||+|||+.++.++... +.++|||+|+++|+.|+.+.+.+++...+.
T Consensus 55 g~~p-~iQ~~ai~~il~g~---dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp CSCC-HHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred CCCH-HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 4558 99999999998764 89999999999998555555433 578999999999999999999998755455
Q ss_pred --cEEEEeCCcccc--------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--hhHHHH
Q 010184 98 --QICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKV 165 (516)
Q Consensus 98 --~v~~~~~~~~~~--------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~ 165 (516)
.+..++|+.... +.. .+|+|+|++.+.....+ + ..+++||+||||++.+ ..+..+
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----------L--~~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----------L--GHFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----------S--CCCSEEEESCHHHHHTSTHHHHHH
T ss_pred cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----------h--ccCCEEEEeChhhhhhccccHHHH
Confidence 688888865321 233 89999999999765432 3 4788999999999876 455666
Q ss_pred Hhhcc------------cceEEEEeccCCCCccchhhh-HhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHH
Q 010184 166 ISLTK------------SHCKLGLTATLVREDERITDL-NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSE 232 (516)
Q Consensus 166 l~~~~------------~~~~l~LTATp~~~~~~~~~l-~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~ 232 (516)
+..+. ..+.+++|||+.........+ ..... .... ..............
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~---i~v~------~~~~~~~~i~~~~~--------- 259 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN---FDIG------SSRITVRNVEDVAV--------- 259 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC---CCCS------CCEECCCCEEEEEE---------
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE---EEcc------CcccCcCCceEEEe---------
Confidence 65543 235689999987652211111 11111 0000 00000001111111
Q ss_pred HHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC----CceEecCCCHHHHHHHHHH
Q 010184 233 YLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQA 308 (516)
Q Consensus 233 ~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~----~~~i~g~~~~~eR~~~l~~ 308 (516)
...|...+..++. ..+.++||||+++..++.++..|. +..+||++ .++++.
T Consensus 260 ----------------~~~k~~~L~~ll~----~~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~ 314 (1054)
T 1gku_B 260 ----------------NDESISTLSSILE----KLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEK 314 (1054)
T ss_dssp ----------------SCCCTTTTHHHHT----TSCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHH
T ss_pred ----------------chhHHHHHHHHHh----hcCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHH
Confidence 1122233444443 225789999999999999999995 35688987 377899
Q ss_pred HhcCCCccEEEE----eCCCccccccccc-CEEEEecCC
Q 010184 309 FKCSRDLNTIFL----SKVGDNSIDIPEA-NVIIQISSH 342 (516)
Q Consensus 309 F~~~~~~~vLv~----t~~~~~GlDlp~a-~~vI~~~~~ 342 (516)
|+++ +++|||| |+++++|||+|++ ++||+++.+
T Consensus 315 F~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 315 FVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHT-SCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHcC-CCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 9998 9999999 8999999999995 999999777
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=1.6e-27 Score=248.22 Aligned_cols=246 Identities=17% Similarity=0.145 Sum_probs=160.5
Q ss_pred cccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
++.++++|||+|||++++.++. ..+.++||++|+++|+.|+.+.|.. ..+...++.....-.....+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~------~~v~~~~~~~~~~~~~~~~~~~~ 76 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG------EPIRYMTPAVQSERTGNEIVDFM 76 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT------SCEEEC---------CCCSEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC------CeEEEEecCccccCCCCceEEEE
Confidence 5899999999999999855443 3457999999999999999987762 24555555433222233556667
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHHhhc---ccceEEEEeccCCCCccchhhhHhh
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLT---KSHCKLGLTATLVREDERITDLNFL 194 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~~---~~~~~l~LTATp~~~~~~~~~l~~~ 194 (516)
|.+.+.. .++....-.++++||+||+|++... .....+..+ ...++|+|||||...-...
T Consensus 77 ~~~~l~~---------~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~------ 141 (431)
T 2v6i_A 77 CHSTFTM---------KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAF------ 141 (431)
T ss_dssp EHHHHHH---------HHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSS------
T ss_pred chHHHHH---------HHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhh------
Confidence 7776632 1222222367899999999998421 112222222 3567899999998642210
Q ss_pred hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEE
Q 010184 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (516)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF 274 (516)
.. + -.+ ...+....... ....++. ++ . ..+.++|||
T Consensus 142 ~~--------------~-~~~--i~~~~~~~~~~----------------------~~~~~~~-~l---~-~~~~~~lVF 177 (431)
T 2v6i_A 142 PP--------------S-NSP--IIDEETRIPDK----------------------AWNSGYE-WI---T-EFDGRTVWF 177 (431)
T ss_dssp CC--------------C-SSC--CEEEECCCCSS----------------------CCSSCCH-HH---H-SCSSCEEEE
T ss_pred cC--------------C-CCc--eeeccccCCHH----------------------HHHHHHH-HH---H-cCCCCEEEE
Confidence 00 0 000 00110000000 0000111 11 1 235689999
Q ss_pred eccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCE--------------
Q 010184 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANV-------------- 335 (516)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~-------------- 335 (516)
|+++..++.+++.| .+..+||+ +|.++++.|+++ +.+|||||+++++|+|+| +.+
T Consensus 178 ~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~ 251 (431)
T 2v6i_A 178 VHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLD 251 (431)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEET
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEEECchHHcCcccC-CcEEEecCccccceecc
Confidence 99999999999998 35578886 678899999998 999999999999999999 554
Q ss_pred ---EEEecCCCCCHHHHHHHhhcccccCC
Q 010184 336 ---IIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 336 ---vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
||+++.+. +..+|.||+||+||.|.
T Consensus 252 ~~~vi~~~~p~-~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 252 GRVSMQGPIAI-TPASAAQRRGRIGRNPE 279 (431)
T ss_dssp TEEEEEEEEEC-CHHHHHHHHTTSSCCTT
T ss_pred cceeecccccC-CHHHHHHhhhccCCCCC
Confidence 45555554 99999999999999984
No 47
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=4.5e-28 Score=253.87 Aligned_cols=260 Identities=18% Similarity=0.137 Sum_probs=170.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
++.|.|+ ++..++.++ ...++.+|||+|||++++.++. ..+.++||++|+++|+.|+.+++... .+.
T Consensus 4 q~~~iq~-~i~~~l~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 74 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL------PIR 74 (451)
T ss_dssp CCSCCCC-CCGGGGSTT--CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE
T ss_pred CCCCcHH-HHHHHHhcC--CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc------eee
Confidence 4555664 577677664 2558889999999997665542 23578999999999999999988532 233
Q ss_pred EEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH---HH---hhcccceE
Q 010184 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VI---SLTKSHCK 174 (516)
Q Consensus 101 ~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~---~l---~~~~~~~~ 174 (516)
.-.............|.++|++.+... +.....-..+++||+||||++ +..+.. .+ ...+..++
T Consensus 75 ~~~~~~~~~~~~~~~i~~~t~~~l~~~---------l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 75 YQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp ECCTTCSCCCCSSCCEEEEEHHHHHHH---------HHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeccccccCCCCceEEEEChHHHHHH---------hhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 222222212234467889999877432 122222357899999999987 322111 11 11235678
Q ss_pred EEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchH
Q 010184 175 LGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (516)
Q Consensus 175 l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~ 253 (516)
++|||||....... +.+ +.. ..+..+.+.. .|. .+
T Consensus 145 i~~SAT~~~~~~~~-----~~~~~~~-------------------~~~~~~~p~~---~~~----------------~~- 180 (451)
T 2jlq_A 145 IFMTATPPGSTDPF-----PQSNSPI-------------------EDIEREIPER---SWN----------------TG- 180 (451)
T ss_dssp EEECSSCTTCCCSS-----CCCSSCE-------------------EEEECCCCSS---CCS----------------SS-
T ss_pred EEEccCCCccchhh-----hcCCCce-------------------EecCccCCch---hhH----------------HH-
Confidence 99999996532210 011 110 0000011100 000 00
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccc
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~Gl 328 (516)
. ..+ . ..+.++||||+++..++.++..|. +..+||++ +.++++.|+++ +.+|||||+++++|+
T Consensus 181 --~-~~l---~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~vLVaT~v~~~Gi 248 (451)
T 2jlq_A 181 --F-DWI---T-DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDFVVTTDISEMGA 248 (451)
T ss_dssp --C-HHH---H-HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSEEEECGGGGSSC
T ss_pred --H-HHH---H-hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceEEEECCHHHhCc
Confidence 0 111 1 235699999999999999999993 34577764 45789999997 999999999999999
Q ss_pred cccccCEEEEec--------------------CCCCCHHHHHHHhhcccccCC
Q 010184 329 DIPEANVIIQIS--------------------SHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 329 Dlp~a~~vI~~~--------------------~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+|+ ++||.++ .| .|..+|+||+||+||.|.
T Consensus 249 Dip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p-~s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 249 NFRA-GRVIDPRRCLKPVILTDGPERVILAGPIP-VTPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEE-CCHHHHHHHHTTSSCCTT
T ss_pred CCCC-CEEEECCCcccccccccccceeeeccccc-CCHHHHHHhccccCCCCC
Confidence 9999 9999765 44 499999999999999994
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=4.5e-28 Score=252.93 Aligned_cols=245 Identities=15% Similarity=0.128 Sum_probs=151.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
++.++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.|..+ .+....+... .|+
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~---------~v~ 73 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS---------AHG 73 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---------CCC
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---------ecc
Confidence 58999999999999998655432 3468999999999999999988754 2332222111 256
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhhcccceEEEEeccCCCCccchhhhHhh
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~ 194 (516)
|++.+........-...+.....-..+++||+||+|++... .+...+......++++|||||.......
T Consensus 74 Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~------ 147 (440)
T 1yks_A 74 SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEF------ 147 (440)
T ss_dssp CSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS------
T ss_pred CCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhh------
Confidence 66555433221110111111111367899999999999221 1221111124568999999997543321
Q ss_pred hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEE
Q 010184 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (516)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF 274 (516)
..+ ..++......++.. .+...+..+. ..+.++|||
T Consensus 148 ~~~---------------~~~~~~~~~~~~~~------------------------~~~~~~~~l~-----~~~~~~lVF 183 (440)
T 1yks_A 148 PHS---------------NGEIEDVQTDIPSE------------------------PWNTGHDWIL-----ADKRPTAWF 183 (440)
T ss_dssp CCC---------------SSCEEEEECCCCSS------------------------CCSSSCHHHH-----HCCSCEEEE
T ss_pred hhc---------------CCCeeEeeeccChH------------------------HHHHHHHHHH-----hcCCCEEEE
Confidence 000 00111111111000 0000111122 236799999
Q ss_pred eccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE-----------
Q 010184 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----------- 338 (516)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----------- 338 (516)
|+++..++.+++.| ++..+|| ++|.++++.|+++ +++|||||+++++|+|+| +++||+
T Consensus 184 ~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~ 257 (440)
T 1yks_A 184 LPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVD 257 (440)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEET
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEEECChhheeeccC-ceEEEeCCccceeeecc
Confidence 99999999999998 3557888 3688999999998 999999999999999999 999884
Q ss_pred --------ecCCCCCHHHHHHHhhcccccC
Q 010184 339 --------ISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 339 --------~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
++.+. +..+|.||+||+||.|
T Consensus 258 ~~~~~vi~~~~p~-~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 258 EGRKVAIKGPLRI-SASSAAQRRGRIGRNP 286 (440)
T ss_dssp TTTEEEEEEEEEC-CHHHHHHHHTTSSCCT
T ss_pred cccceeecccccc-CHHHHHHhccccCCCC
Confidence 55554 9999999999999985
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=8.2e-28 Score=252.40 Aligned_cols=245 Identities=17% Similarity=0.152 Sum_probs=157.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
+++++++|||+|||++++.++.. .+.++||++|+++|+.|+.+.+..+ .+....+...........+.+.
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~~~t~~~~i~~~ 95 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQREHQGNEIVDVM 95 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS------CEEECC--------CCCSEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc------eEeEEecccccCCCCCcEEEEE
Confidence 48999999999999997655432 4578999999999999999988732 2332222211111223456677
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-----hhHHHHHhhcccceEEEEeccCCCCccchhhhHhh
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-----HMFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-----~~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~~ 194 (516)
|.+.+... .+....-..+++||+||||+... ..+.......+..++++|||||.......
T Consensus 96 ~~~~l~~~---------l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~~------ 160 (459)
T 2z83_A 96 CHATLTHR---------LMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDPF------ 160 (459)
T ss_dssp EHHHHHHH---------HHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSS------
T ss_pred chHHHHHH---------hhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhhh------
Confidence 77665321 11111135789999999999632 23333333335678999999997542210
Q ss_pred hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEE
Q 010184 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (516)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF 274 (516)
... -.++.. +........+ ...+ .++. ..+.++|||
T Consensus 161 ~~~---------------~~pi~~--~~~~~~~~~~-------------------~~~~----~~l~----~~~~~~LVF 196 (459)
T 2z83_A 161 PDS---------------NAPIHD--LQDEIPDRAW-------------------SSGY----EWIT----EYAGKTVWF 196 (459)
T ss_dssp CCC---------------SSCEEE--EECCCCSSCC-------------------SSCC----HHHH----HCCSCEEEE
T ss_pred ccC---------------CCCeEE--ecccCCcchh-------------------HHHH----HHHH----hcCCCEEEE
Confidence 000 001100 0000000000 0000 1111 236799999
Q ss_pred eccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE-----------
Q 010184 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----------- 338 (516)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~----------- 338 (516)
|+++..++.+++.| .+..+||+ +|.++++.|+++ +.+|||||+++++|+|+|+ ++||.
T Consensus 197 ~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~ 270 (459)
T 2z83_A 197 VASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILE 270 (459)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEEEESSCC---CCCSC-SEEEECCEECCEEEEC
T ss_pred eCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEEEECChHHhCeecCC-CEEEECCccccccccc
Confidence 99999999999999 24467874 678899999997 9999999999999999999 99997
Q ss_pred ---------ecCCCCCHHHHHHHhhcccccC
Q 010184 339 ---------ISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 339 ---------~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
++.| .|+..|+||+||+||.|
T Consensus 271 ~~~~~~~~~~d~p-~s~~~~~QR~GRaGR~g 300 (459)
T 2z83_A 271 EGEGRVILGNPSP-ITSASAAQRRGRVGRNP 300 (459)
T ss_dssp SSSCEEEECSCEE-CCHHHHHHHHTTSSCCT
T ss_pred ccccccccccCCC-CCHHHHHHhccccCCCC
Confidence 4355 49999999999999998
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=2.8e-26 Score=253.91 Aligned_cols=287 Identities=16% Similarity=0.205 Sum_probs=191.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----c--CCCEEEEEeChhhHHHHHHHHHHhhCCCCC-
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----I--KKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~--~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~- 97 (516)
.+.+.|.+++..++..+ ...++++|||+|||.+.-.++.. . +..++|++|+++|+.|+.+.+...++....
T Consensus 93 lP~~~q~~~i~~~l~~~--~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~ 170 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNN--QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE 170 (773)
T ss_dssp SGGGGGHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTT
T ss_pred CChHHHHHHHHHHHhCC--CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhh
Confidence 45668888888888765 37899999999999943333321 1 345999999999999999988877654432
Q ss_pred cEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCcc-CCch-----hHHHHHhhccc
Q 010184 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAH-----MFRKVISLTKS 171 (516)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~-~~~~-----~~~~~l~~~~~ 171 (516)
.++ +.............|+++|++++.... +....-..+++||+||+|. ..+. ....+....+.
T Consensus 171 ~vG-~~i~~~~~~~~~~~I~v~T~G~l~r~l---------~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~ 240 (773)
T 2xau_A 171 EVG-YSIRFENKTSNKTILKYMTDGMLLREA---------MEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPD 240 (773)
T ss_dssp TEE-EEETTEEECCTTCSEEEEEHHHHHHHH---------HHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTT
T ss_pred eec-ceeccccccCCCCCEEEECHHHHHHHH---------hhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCC
Confidence 222 111111122346789999999885421 1112236789999999995 4332 22333333345
Q ss_pred ceEEEEeccCCCCccchhhhHhhhC-CccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCc
Q 010184 172 HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~~~g-p~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 250 (516)
.+.++||||+.. . .+..+++ +.+... .|-..++.. .+.+.... .|.
T Consensus 241 ~~iIl~SAT~~~--~---~l~~~~~~~~vi~v-------~gr~~pv~~--~~~~~~~~---~~~---------------- 287 (773)
T 2xau_A 241 LKIIIMSATLDA--E---KFQRYFNDAPLLAV-------PGRTYPVEL--YYTPEFQR---DYL---------------- 287 (773)
T ss_dssp CEEEEEESCSCC--H---HHHHHTTSCCEEEC-------CCCCCCEEE--ECCSSCCS---CHH----------------
T ss_pred ceEEEEeccccH--H---HHHHHhcCCCcccc-------cCcccceEE--EEecCCch---hHH----------------
Confidence 678999999942 1 2333444 222111 121222221 12111100 000
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC----------------CceEecCCCHHHHHHHHHHHh----
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----------------KPMIYGATSHVERTKILQAFK---- 310 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~----------------~~~i~g~~~~~eR~~~l~~F~---- 310 (516)
...+..++..+....+.++||||+++..++.++..|. +..+||++++++|.++++.|.
T Consensus 288 --~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~ 365 (773)
T 2xau_A 288 --DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHN 365 (773)
T ss_dssp --HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSS
T ss_pred --HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccC
Confidence 1223344444432457899999999999998888763 346999999999999999999
Q ss_pred -cCCCccEEEEeCCCcccccccccCEEEEecC------------------CCCCHHHHHHHhhcccccC
Q 010184 311 -CSRDLNTIFLSKVGDNSIDIPEANVIIQISS------------------HAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 311 -~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~------------------~~~s~~~~~Qr~GR~~R~g 360 (516)
++ ..+|||||+++++|||+|++++||.++. | .|...|.||+||+||.+
T Consensus 366 ~~g-~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p-~S~~s~~QR~GRaGR~~ 432 (773)
T 2xau_A 366 GRP-GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSP-ISKASAQQRAGRAGRTR 432 (773)
T ss_dssp SSC-CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEE-CCHHHHHHHHHGGGSSS
T ss_pred CCC-ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCcccccccc-CCHHHHHhhccccCCCC
Confidence 76 9999999999999999999999998533 4 49999999999999985
No 51
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=9.8e-27 Score=251.50 Aligned_cols=261 Identities=16% Similarity=0.138 Sum_probs=170.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-H---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-C---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
...|.|..++..+..+ ++.++.+|||+|||++++..+ . ..+.++||++|+++|+.|+.+.|... .+.
T Consensus 171 ~~lpiq~~~i~~l~~g---~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~------~v~ 241 (618)
T 2whx_A 171 IGEPDYEVDEDIFRKK---RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL------PIR 241 (618)
T ss_dssp CCCCCCCCCGGGGSTT---CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE
T ss_pred cCCCccccCHHHHhcC---CeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC------cee
Confidence 3445555455544443 499999999999999975543 2 23568999999999999999888632 343
Q ss_pred EEeCCc-cccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhc--ccceE
Q 010184 101 RFTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT--KSHCK 174 (516)
Q Consensus 101 ~~~~~~-~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~--~~~~~ 174 (516)
+.... .........+.++|.+.+... .+.......+++||+||||++... ....++..+ ...+.
T Consensus 242 -~~~~~l~~~~tp~~~i~~~t~~~l~~~---------l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~ 311 (618)
T 2whx_A 242 -YQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAA 311 (618)
T ss_dssp -ECCTTSSCCCCSSSCEEEEEHHHHHHH---------HHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEE
T ss_pred -EecccceeccCCCceEEEEChHHHHHH---------HhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccE
Confidence 33222 111123355667777766431 122212367899999999998322 223333333 34678
Q ss_pred EEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHH
Q 010184 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (516)
Q Consensus 175 l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~ 254 (516)
++|||||......... ..+. ...+......+ ....
T Consensus 312 il~SAT~~~~~~~~~~----~~~~-------------------~~~v~~~~~~~----------------------~~~~ 346 (618)
T 2whx_A 312 IFMTATPPGSTDPFPQ----SNSP-------------------IEDIEREIPER----------------------SWNT 346 (618)
T ss_dssp EEECSSCTTCCCSSCC----CSSC-------------------EEEEECCCCSS----------------------CCSS
T ss_pred EEEECCCchhhhhhhc----cCCc-------------------eeeecccCCHH----------------------HHHH
Confidence 9999999754322000 0011 11111110000 0000
Q ss_pred HHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccc
Q 010184 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSID 329 (516)
Q Consensus 255 ~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlD 329 (516)
++..+. ..+.++||||+++..++.+++.| ++..+||+ +|.++++.|+++ +.+|||||+++++|+|
T Consensus 347 ll~~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLVaTdv~~rGiD 416 (618)
T 2whx_A 347 GFDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVVTTDISEMGAN 416 (618)
T ss_dssp SCHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEEECGGGGTTCC
T ss_pred HHHHHH-----hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEEECcHHHcCcc
Confidence 111222 23569999999999999999999 35568884 788899999998 9999999999999999
Q ss_pred ccccCEE--------------------EEecCCCCCHHHHHHHhhcccccCC
Q 010184 330 IPEANVI--------------------IQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 330 lp~a~~v--------------------I~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+| +++| |+++.| .|..+|+||+||++|.|.
T Consensus 417 i~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P-~s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 417 FR-AGRVIDPRRCLKPVILTDGPERVILAGPIP-VTPASAAQRRGRIGRNPA 466 (618)
T ss_dssp CC-CSEEEECCEEEEEEEECSSSCEEEEEEEEE-CCHHHHHHHHTTSSCCTT
T ss_pred cC-ceEEEECcceecceecccCCCceEEccccc-CCHHHHHHhccccCCCCC
Confidence 98 8887 555555 499999999999999973
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=6.3e-27 Score=254.67 Aligned_cols=264 Identities=16% Similarity=0.170 Sum_probs=164.8
Q ss_pred CCCHHHH-----HHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 25 QPRPYQE-----KSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 25 ~Lr~yQ~-----~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.++|.|. +++..++. -..+++.++.+|||+|||++++.++. ..+.++||++|+++|+.|+.+.|..+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~- 293 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL- 293 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcC-
Confidence 5777788 88876551 01124899999999999999765543 23568999999999999999988865
Q ss_pred CCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhc
Q 010184 93 TIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT 169 (516)
Q Consensus 93 ~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~ 169 (516)
+ +....+.....-....-+-+.+...+. ..++....-..+++||+||+|++... ....+...+
T Consensus 294 ~-----i~~~~~~l~~v~tp~~ll~~l~~~~l~---------~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~ 359 (673)
T 2wv9_A 294 P-----VRYLTPAVQREHSGNEIVDVMCHATLT---------HRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRV 359 (673)
T ss_dssp C-----CEECCC---CCCCSCCCEEEEEHHHHH---------HHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHHHH
T ss_pred C-----eeeecccccccCCHHHHHHHHHhhhhH---------HHHhcccccccceEEEEeCCcccCccHHHHHHHHHHhc
Confidence 1 221111111000111122233333221 11111112367899999999999321 111112222
Q ss_pred --ccceEEEEeccCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhh
Q 010184 170 --KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (516)
Q Consensus 170 --~~~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~ 247 (516)
...++|+|||||...-.. +... -.+ ...+......
T Consensus 360 ~~~~~~vl~~SAT~~~~i~~------~~~~---------------~~~--i~~v~~~~~~-------------------- 396 (673)
T 2wv9_A 360 EAGEAAAIFMTATPPGTSDP------FPDT---------------NSP--VHDVSSEIPD-------------------- 396 (673)
T ss_dssp HTTSCEEEEECSSCTTCCCS------SCCC---------------SSC--EEEEECCCCS--------------------
T ss_pred cccCCcEEEEcCCCChhhhh------hccc---------------CCc--eEEEeeecCH--------------------
Confidence 456889999999754221 0000 001 1111111100
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
..+...+..+ . ..+.++||||+++..++.++..| .+..+||+ +|.++++.|+++ +.+|||||+
T Consensus 397 --~~~~~~l~~l----~-~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLVaTd 464 (673)
T 2wv9_A 397 --RAWSSGFEWI----T-DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVITTD 464 (673)
T ss_dssp --SCCSSCCHHH----H-SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEEECG
T ss_pred --HHHHHHHHHH----H-hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEEECc
Confidence 0000111122 2 35779999999999999999999 34578983 799999999998 999999999
Q ss_pred CCcccccccccCEEEE--------------------ecCCCCCHHHHHHHhhcccccC
Q 010184 323 VGDNSIDIPEANVIIQ--------------------ISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~--------------------~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
++++|||+| +++||+ ++.| .|..+|.||+||+||.+
T Consensus 465 v~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P-~s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 465 ISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSA-ITSASAAQRRGRVGRNP 520 (673)
T ss_dssp GGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEE-CCHHHHHHHHTTSSCCS
T ss_pred hhhcceeeC-CcEEEECCCcccceeeecccccceecccCC-CCHHHHHHHhhccCCCC
Confidence 999999999 999986 2334 48999999999999984
No 53
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=2.1e-26 Score=249.47 Aligned_cols=323 Identities=17% Similarity=0.129 Sum_probs=193.4
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.+.++|.|..++..++.+ . |..++||+|||+++..++. ..++.++||+|+++|+.|..+++..+....+..+
T Consensus 81 G~~pt~VQ~~~ip~ll~G----~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDG----N-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTT----S-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHhhHHHhCC----C-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 347999999999987754 2 8999999999999988774 2357899999999999986666655443334567
Q ss_pred EEEeCCcccc---ccCCCcEEEEchhhhhc-----cCCCChhHHHHHHHHccCCccEEEEccCccCC-ch----------
Q 010184 100 CRFTSDSKER---FRGNAGVVVTTYNMVAF-----GGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH---------- 160 (516)
Q Consensus 100 ~~~~~~~~~~---~~~~~~IvV~T~~~l~~-----~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~-~~---------- 160 (516)
..+.|+.... ....++|+++|++.|.. ..... ...+......++|+||||++. ..
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~------~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~ 229 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLY------KEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQ 229 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSS------GGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEE
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcc------hhhhcccCCCEEEECchhhhhhhccccchhhcCC
Confidence 7777764321 12348999999998832 11000 012223677899999999975 21
Q ss_pred ---------hHHHHHhhccc----------ceEE-----------------EEeccCCCCccchh-hh--H---------
Q 010184 161 ---------MFRKVISLTKS----------HCKL-----------------GLTATLVREDERIT-DL--N--------- 192 (516)
Q Consensus 161 ---------~~~~~l~~~~~----------~~~l-----------------~LTATp~~~~~~~~-~l--~--------- 192 (516)
...+++..++. +..+ ++|||.......+. .+ .
T Consensus 230 ~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dY 309 (844)
T 1tf5_A 230 AAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDY 309 (844)
T ss_dssp EECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTE
T ss_pred cccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCce
Confidence 23345555531 2222 44555321000000 00 0
Q ss_pred -----------hhhCCccccccH----HHHH--hCCCcc-cce--eEEEe-----------ccCC-------HHHHHHHH
Q 010184 193 -----------FLIGPKLYEANW----LDLV--KGGFIA-NVQ--CAEVW-----------CPMT-------KEFFSEYL 234 (516)
Q Consensus 193 -----------~~~gp~~~~~~~----~~l~--~~g~l~-~~~--~~~v~-----------~~~~-------~~~~~~~l 234 (516)
.+.|.......| .+.+ ..+.-. +.. ...+. +.|+ .++...|.
T Consensus 310 iv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~ 389 (844)
T 1tf5_A 310 VVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYN 389 (844)
T ss_dssp EEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHC
T ss_pred EEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhC
Confidence 001111111111 1111 011110 000 00000 0000 11111121
Q ss_pred Hhh---hh-HH------HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCH
Q 010184 235 KKE---NS-KK------KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSH 299 (516)
Q Consensus 235 ~~~---~~-~~------~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~ 299 (516)
-.. .. +. ...++.....|+.++..++.... ..+.++||||+++..++.++..|. ...+||++.+
T Consensus 390 l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~ 468 (844)
T 1tf5_A 390 MQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHE 468 (844)
T ss_dssp CCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHH
T ss_pred CceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccH
Confidence 000 00 00 00111222356776666664321 347789999999999999999993 4579999988
Q ss_pred HHHHHHHHHHhcCCCccEEEEeCCCccccccc--------ccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIP--------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 300 ~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp--------~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.+|..+.+.|+.+ .|+|||+++++|+|++ +..+||.++.|. |++.|.||+||+||.|.
T Consensus 469 rEr~ii~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~-s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 469 REAQIIEEAGQKG---AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE-SRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp HHHHHHTTTTSTT---CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS-SHHHHHHHHTTSSGGGC
T ss_pred HHHHHHHHcCCCC---eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC-CHHHHHhhcCccccCCC
Confidence 8887666566554 7999999999999999 677999998875 99999999999999984
No 54
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=4e-27 Score=252.91 Aligned_cols=254 Identities=17% Similarity=0.087 Sum_probs=173.1
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
++++|.+.+..+.+ + ++.++.+|||+|||.++..++...+.++||++|+++|+.|+.+.+.+.++. .+....+.
T Consensus 218 ~~~~q~~i~~~L~~-~--~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~---~vg~~vG~ 291 (666)
T 3o8b_A 218 VFTDNSSPPAVPQS-F--QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGI---DPNIRTGV 291 (666)
T ss_dssp SCCCCCSCCCCCSS-C--EEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSC---CCEEECSS
T ss_pred cHHHHHHHHHHHHc-C--CeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCC---CeeEEECc
Confidence 34445444443322 2 488999999999999998888777779999999999999999999887654 35555555
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhcccc---eEEEEec
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTKSH---CKLGLTA 179 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~~~~---~~l~LTA 179 (516)
.. .....+|+|+|++.|... ..+...++++||+||||.+... .+..++..++.. ..+++||
T Consensus 292 ~~--~~~~~~IlV~TPGrLl~~-----------~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 292 RT--ITTGAPVTYSTYGKFLAD-----------GGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp CE--ECCCCSEEEEEHHHHHHT-----------TSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred Ee--ccCCCCEEEECcHHHHhC-----------CCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 43 345689999999988432 1222367899999999887644 244455555432 3678899
Q ss_pred cCCCCccchhhhHhhhCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHH
Q 010184 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259 (516)
Q Consensus 180 Tp~~~~~~~~~l~~~~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~l 259 (516)
||...-.. -.|... .+....... ..+..... .
T Consensus 359 T~~~~i~~-------~~p~i~-------------------~v~~~~~~~--i~~~~~~~-------------~------- 390 (666)
T 3o8b_A 359 TPPGSVTV-------PHPNIE-------------------EVALSNTGE--IPFYGKAI-------------P------- 390 (666)
T ss_dssp SCTTCCCC-------CCTTEE-------------------EEECBSCSS--EEETTEEE-------------C-------
T ss_pred CCCccccc-------CCcceE-------------------EEeecccch--hHHHHhhh-------------h-------
Confidence 99753111 001100 000000000 00000000 0
Q ss_pred HHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccC
Q 010184 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN 334 (516)
Q Consensus 260 l~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~ 334 (516)
+ .. ..+.++||||++++.++.+++.|. +..+||++++++ |.++ ..+|||+|+++++|||+| ++
T Consensus 391 l--~~-~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 I--EA-IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp G--GG-SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCEEEEECTTHHHHCCCC-BS
T ss_pred h--hh-ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCcEEEECChHHccCCCC-Cc
Confidence 0 01 347899999999999999999993 457999999865 4454 569999999999999997 99
Q ss_pred EEEE----------ec-----------CCCCCHHHHHHHhhcccccC
Q 010184 335 VIIQ----------IS-----------SHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 335 ~vI~----------~~-----------~~~~s~~~~~Qr~GR~~R~g 360 (516)
+||+ ++ .| .|..+|+||+||++| |
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P-~s~~syiQRiGRtGR-g 503 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVP-QDAVSRSQRRGRTGR-G 503 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEE-CBHHHHHHHHTTBCS-S
T ss_pred EEEecCcccccccccccccccccccccCc-CCHHHHHHHhccCCC-C
Confidence 9884 33 33 489999999999999 6
No 55
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=1.6e-25 Score=241.88 Aligned_cols=323 Identities=19% Similarity=0.109 Sum_probs=183.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
..++|.|..++..++.+ . |..++||+|||+++..++.. .+..++||+||++|+.|..+.+..+....+..+.
T Consensus 73 ~~p~~VQ~~~i~~ll~G----~-Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~ 147 (853)
T 2fsf_A 73 MRHFDVQLLGGMVLNER----C-IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVG 147 (853)
T ss_dssp CCCCHHHHHHHHHHHSS----E-EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCChHHHhhcccccCC----e-eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEE
Confidence 57899999999977654 2 88999999999999877642 3578999999999999877776665544455788
Q ss_pred EEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHH----HHHHccCCccEEEEccCccCCch-------------
Q 010184 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKI----IEEIRNREWGLLLMDEVHVVPAH------------- 160 (516)
Q Consensus 101 ~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~----~~~l~~~~~~~vIlDEaH~~~~~------------- 160 (516)
.+.|+.... ....++|+|+|++.+....- ... ...+......++|+||||++...
T Consensus 148 ~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyL-----rd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIiSg~~~ 222 (853)
T 2fsf_A 148 INLPGMPAPAKREAYAADITYGTNNEYGFDYL-----RDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLIISGPAE 222 (853)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHH-----HHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEEEEC--
T ss_pred EEeCCCCHHHHHHhcCCCEEEECCchhhHHHH-----HhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccccCCCc
Confidence 877774321 12347999999988731100 000 01223467889999999987621
Q ss_pred -------hHHHHHhhccc--------------------ceEE-------------------------EEeccCCCCccch
Q 010184 161 -------MFRKVISLTKS--------------------HCKL-------------------------GLTATLVREDERI 188 (516)
Q Consensus 161 -------~~~~~l~~~~~--------------------~~~l-------------------------~LTATp~~~~~~~ 188 (516)
....++..++. .+.+ ++|||.......+
T Consensus 223 ~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~~~~~i 302 (853)
T 2fsf_A 223 DSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIMLMHHV 302 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccchHHHHH
Confidence 11223333321 1112 3344421100000
Q ss_pred h-----------------------hhHhhhCCccccccHHHHHhC------CC-cccc--eeEEEe-----------ccC
Q 010184 189 T-----------------------DLNFLIGPKLYEANWLDLVKG------GF-IANV--QCAEVW-----------CPM 225 (516)
Q Consensus 189 ~-----------------------~l~~~~gp~~~~~~~~~l~~~------g~-l~~~--~~~~v~-----------~~~ 225 (516)
. .+..+.|..+....|.+-..+ +. +.+. ....+. +.|
T Consensus 303 ~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~tla~It~qnyfr~Y~kl~Gm 382 (853)
T 2fsf_A 303 TAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQTLASITFQNYFRLYEKLAGM 382 (853)
T ss_dssp ------------------------------------------------------CCCCCEEEEEEEHHHHHTTSSEEEEE
T ss_pred HHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccccceeehHHHHhhhhhhhcC
Confidence 0 000000000000111110000 00 0000 000000 000
Q ss_pred C-------HHHHHHHHHhh---hh-----HH--HHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh
Q 010184 226 T-------KEFFSEYLKKE---NS-----KK--KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (516)
Q Consensus 226 ~-------~~~~~~~l~~~---~~-----~~--~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L 288 (516)
| .++...|.-.. .+ +. ...++.....|+.++..++.... ..+..+||||+++..++.++..|
T Consensus 383 TGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L 461 (853)
T 2fsf_A 383 TGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNEL 461 (853)
T ss_dssp ECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHH
Confidence 0 11111110000 00 00 00112223457777777664332 46789999999999999999999
Q ss_pred C-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccccccc------------------------------
Q 010184 289 R-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA------------------------------ 333 (516)
Q Consensus 289 ~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a------------------------------ 333 (516)
. ..++||+..+.+|..+.+.|+.+ .|+|+|+++++|+|++..
T Consensus 462 ~~~gi~~~vLnak~~~rEa~iia~agr~G---~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (853)
T 2fsf_A 462 TKAGIKHNVLNAKFHANEAAIVAQAGYPA---AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHD 538 (853)
T ss_dssp HHTTCCCEECCTTCHHHHHHHHHTTTSTT---CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHH
T ss_pred HHCCCCEEEecCChhHHHHHHHHhcCCCC---eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhh
Confidence 2 55799999888888788888876 699999999999999973
Q ss_pred -------CEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 334 -------NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 334 -------~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.+||.++.|. |++.|.||.||+||.|.
T Consensus 539 ~V~~~GGl~VI~te~pe-s~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 539 AVLEAGGLHIIGTERHE-SRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp HHHHTTSEEEEESSCCS-SHHHHHHHHTTSSGGGC
T ss_pred HHHhcCCcEEEEccCCC-CHHHHHhhccccccCCC
Confidence 4899998775 99999999999999984
No 56
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=3.2e-25 Score=240.67 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=179.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccccc---CCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR---GNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~---~~~~IvV~T 120 (516)
++.++++|||+|||+.++..+... +..+|++|+++|+.|+.+.+.+. + ..+..++|+...... ...+++++|
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~-g---~~v~lltG~~~~iv~TpGr~~~il~~T 230 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAA-G---VPCDLVTGEERVTVQPNGKQASHVSCT 230 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-SSEEEEESSHHHHHHHHHHHHHT-T---CCEEEECSSCEECCSTTCCCCSEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhc-C---CcEEEEECCeeEEecCCCcccceeEec
Confidence 478999999999999777766554 45699999999999999999885 3 367888887654321 236789999
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc--cceEEEEeccCCCCccchhhhHhh
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK--SHCKLGLTATLVREDERITDLNFL 194 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~--~~~~l~LTATp~~~~~~~~~l~~~ 194 (516)
++++.. ...++++|+||+|++.+. .+..++..+. ..+.+++|||.. ....+...
T Consensus 231 ~e~~~l----------------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~----~i~~l~~~ 290 (677)
T 3rc3_A 231 VEMCSV----------------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID----LVMELMYT 290 (677)
T ss_dssp GGGCCS----------------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH----HHHHHHHH
T ss_pred HhHhhh----------------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH----HHHHHHHh
Confidence 876632 266799999999998755 3445555554 346788899831 11122222
Q ss_pred hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEE
Q 010184 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (516)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF 274 (516)
.+....-.. .....+... . . . .+.. + . .-....+||
T Consensus 291 ~~~~~~v~~------~~r~~~l~~---~-------------~--------------~---~l~~-l---~-~~~~g~iIf 326 (677)
T 3rc3_A 291 TGEEVEVRD------YKRLTPISV---L-------------D--------------H---ALES-L---D-NLRPGDCIV 326 (677)
T ss_dssp HTCCEEEEE------CCCSSCEEE---C-------------S--------------S---CCCS-G---G-GCCTTEEEE
T ss_pred cCCceEEEE------eeecchHHH---H-------------H--------------H---HHHH-H---H-hcCCCCEEE
Confidence 221110000 000000000 0 0 0 0000 0 0 112234888
Q ss_pred eccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhc--CCCccEEEEeCCCcccccccccCEEEEecCC-----
Q 010184 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKC--SRDLNTIFLSKVGDNSIDIPEANVIIQISSH----- 342 (516)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~--~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~~----- 342 (516)
|.++..++.++..| ++..+||++++++|.++++.|++ + ..+|||||+++++|||+ .+++||+++..
T Consensus 327 ~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~ 404 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLIKPSIN 404 (677)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSBC----
T ss_pred EcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCccccccc
Confidence 99999999999988 47789999999999999999998 5 79999999999999999 89999998651
Q ss_pred --------CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcC
Q 010184 343 --------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (516)
Q Consensus 343 --------~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (516)
+.|..++.||+||+||.|. .+..+.+|.+...
T Consensus 405 ~~G~~~~~p~s~~~~~QR~GRAGR~g~----------~g~~G~v~~l~~~ 444 (677)
T 3rc3_A 405 EKGERELEPITTSQALQIAGRAGRFSS----------RFKEGEVTTMNHE 444 (677)
T ss_dssp -------CBCCHHHHHHHHTTBTCTTS----------SCSSEEEEESSTT
T ss_pred cCCccccccCCHHHHHHHhcCCCCCCC----------CCCCEEEEEEecc
Confidence 2389999999999999994 2234566666443
No 57
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=1.7e-24 Score=234.29 Aligned_cols=322 Identities=15% Similarity=0.117 Sum_probs=193.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
+.++|.|..++..++.+ . |..++||+|||+++..++. ..++.++||+|++.|+.|..+.+..+....+..++
T Consensus 110 ~rP~~VQ~~~ip~Ll~G----~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~ 184 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLG----N-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVG 184 (922)
T ss_dssp CCCCHHHHHHHHHHHTT----E-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHhHhcC----C-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 57899999999977653 2 8899999999999987763 23578999999999997755544443333334677
Q ss_pred EEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHH----HHHHccCCccEEEEccCccCCc--------------
Q 010184 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKI----IEEIRNREWGLLLMDEVHVVPA-------------- 159 (516)
Q Consensus 101 ~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~----~~~l~~~~~~~vIlDEaH~~~~-------------- 159 (516)
.+.|+.... ....++|+++|++.|....- ... ...+....+.++|+||||++..
T Consensus 185 ~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyL-----rD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~ 259 (922)
T 1nkt_A 185 VILATMTPDERRVAYNADITYGTNNEFGFDYL-----RDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPAD 259 (922)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHH-----HHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECC
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchHhhHHHH-----HhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCC
Confidence 777764321 12347999999988732100 000 0123336788999999998752
Q ss_pred ------hhHHHHHhhcc----------cceEE-----------------EEeccCCCCccchh-hh--Hhh---------
Q 010184 160 ------HMFRKVISLTK----------SHCKL-----------------GLTATLVREDERIT-DL--NFL--------- 194 (516)
Q Consensus 160 ------~~~~~~l~~~~----------~~~~l-----------------~LTATp~~~~~~~~-~l--~~~--------- 194 (516)
..+.+++..++ .+..+ ++|||.......+. .+ ..+
T Consensus 260 ~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV 339 (922)
T 1nkt_A 260 GASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIV 339 (922)
T ss_dssp CCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEE
T ss_pred cchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceee
Confidence 13445666664 23333 45566431100000 00 001
Q ss_pred -----------hCCccccccH----HHHH--hCCCcccceeEEEeccCC----------------------HHHHHHHHH
Q 010184 195 -----------IGPKLYEANW----LDLV--KGGFIANVQCAEVWCPMT----------------------KEFFSEYLK 235 (516)
Q Consensus 195 -----------~gp~~~~~~~----~~l~--~~g~l~~~~~~~v~~~~~----------------------~~~~~~~l~ 235 (516)
.|.......| .+.+ +.+.-....- ......+ .++..-|.-
T Consensus 340 ~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~-~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l 418 (922)
T 1nkt_A 340 RDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAEN-QTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKL 418 (922)
T ss_dssp CSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCE-EEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCC
T ss_pred ecCceEEEecccCcccCCccccchhhHHHhccccccccccc-cccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCC
Confidence 1111111111 1111 0111110000 0000111 111111110
Q ss_pred hh---hh-----H--HHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHH
Q 010184 236 KE---NS-----K--KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHV 300 (516)
Q Consensus 236 ~~---~~-----~--~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~ 300 (516)
.. .+ + ....++.....|+.++...+.... ..+..+||||+++..++.++..|. ..++||+..+.
T Consensus 419 ~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~r 497 (922)
T 1nkt_A 419 GVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQ 497 (922)
T ss_dssp EEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHH
T ss_pred CeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHH
Confidence 00 00 0 000112222347776666664322 457899999999999999999992 55899998877
Q ss_pred HHHHHHHHHhcCCCccEEEEeCCCccccccccc-----------------------------------------------
Q 010184 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA----------------------------------------------- 333 (516)
Q Consensus 301 eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a----------------------------------------------- 333 (516)
++..+.+.|+.+ .|+|+|+++++|+|++..
T Consensus 498 Ea~iia~agr~G---~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V 574 (922)
T 1nkt_A 498 EATIIAVAGRRG---GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEV 574 (922)
T ss_dssp HHHHHHTTTSTT---CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHhcCCCC---eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHH
Confidence 777777778776 799999999999999975
Q ss_pred -----CEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 334 -----NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 334 -----~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
.+||.++.|. |++.|.|+.||+||.|.
T Consensus 575 ~~~GGlhVI~te~pe-s~riy~qr~GRTGRqGd 606 (922)
T 1nkt_A 575 IEAGGLYVLGTERHE-SRRIDNQLRGRSGRQGD 606 (922)
T ss_dssp HHTTSEEEEECSCCS-SHHHHHHHHHTSSGGGC
T ss_pred HhcCCcEEEeccCCC-CHHHHHHHhcccccCCC
Confidence 4899998775 99999999999999884
No 58
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.92 E-value=1.9e-24 Score=206.66 Aligned_cols=154 Identities=29% Similarity=0.492 Sum_probs=126.9
Q ss_pred CCCccc-cCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 13 NPDLNM-ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 13 ~~~~~~-~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+..++ .+.+..+|+|||.+++..++.++ ++++++|||+|||++++.++...++++||++|+++|+.||.+++.+|
T Consensus 80 ~~~~~~p~~~~~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 80 ADPIPTPYFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCCCCCCCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cccCCCccccCCCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 444555 67788899999999999988764 69999999999999999999888999999999999999999999994
Q ss_pred hCCCCCc-EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 92 STIQDDQ-ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 92 ~~~~~~~-v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
+ .. +..++++.+. ..+|+|+||+.+... ...+ ...|++||+||+|++.+..+..++..++
T Consensus 157 -~---~~~v~~~~g~~~~----~~~i~v~T~~~l~~~----------~~~~-~~~~~llIiDEaH~l~~~~~~~i~~~~~ 217 (237)
T 2fz4_A 157 -G---EEYVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQIAQMSI 217 (237)
T ss_dssp -C---GGGEEEESSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEECSSCCCTTTHHHHHHTCC
T ss_pred -C---CCeEEEEeCCCCC----cCCEEEEeHHHHHhh----------HHHh-cccCCEEEEECCccCCChHHHHHHHhcc
Confidence 3 35 8888887654 478999999988543 2233 3569999999999999999999999989
Q ss_pred cceEEEEeccCCCCccch
Q 010184 171 SHCKLGLTATLVREDERI 188 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~ 188 (516)
..++|+|||||.+.|+..
T Consensus 218 ~~~~l~LSATp~r~D~~~ 235 (237)
T 2fz4_A 218 APFRLGLTATFEREDGRH 235 (237)
T ss_dssp CSEEEEEEESCC------
T ss_pred CCEEEEEecCCCCCCCCC
Confidence 999999999999988763
No 59
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.90 E-value=7e-24 Score=208.39 Aligned_cols=162 Identities=23% Similarity=0.308 Sum_probs=132.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
++|+|||.+++..++.++ ++++++|||+|||++++.++... ++++|||||+++|+.||.++|.+|...+...+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred cCccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 589999999999988874 78999999999999998876532 35999999999999999999999976666667
Q ss_pred EEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-ccceEEE
Q 010184 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLG 176 (516)
Q Consensus 100 ~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~-~~~~~l~ 176 (516)
..+.++.... .....+|+|+||+.+..... .. ...+++||+||||++.++.+..++..+ ...++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~---------~~--~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EW--FSQFGMMMNDECHLATGKSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSCG---------GG--GGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhHH---------HH--HhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEE
Confidence 7766654331 12568899999998865421 11 257899999999999999999888887 5788999
Q ss_pred EeccCCCCccchhhhHhhhCCcc
Q 010184 177 LTATLVREDERITDLNFLIGPKL 199 (516)
Q Consensus 177 LTATp~~~~~~~~~l~~~~gp~~ 199 (516)
|||||.+.++....+..++||..
T Consensus 258 lSATp~~~~~~~~~l~~l~g~i~ 280 (282)
T 1rif_A 258 LSGSLRDGKANIMQYVGMFGEIF 280 (282)
T ss_dssp ECSSCCTTSTTHHHHHHHHCEEE
T ss_pred EeCCCCCcchHHHHHHHhcCCcc
Confidence 99999988888788888898864
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=2.9e-22 Score=218.67 Aligned_cols=93 Identities=17% Similarity=0.269 Sum_probs=85.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
..+.++||||+++..++.++..|. +.++||++++.+|.++++.|+.+ .++|||+|+++++|+|+|++++||+++
T Consensus 437 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 437 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred hcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCCCCCEEEEeC
Confidence 357899999999999999999982 55789999999999999999997 999999999999999999999999987
Q ss_pred C-----CCCCHHHHHHHhhcccccC
Q 010184 341 S-----HAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~-----~~~s~~~~~Qr~GR~~R~g 360 (516)
. + .|...|+||+||++|.+
T Consensus 516 ~d~~G~p-~s~~~~iQr~GRagR~~ 539 (664)
T 1c4o_A 516 ADKEGFL-RSERSLIQTIGRAARNA 539 (664)
T ss_dssp TTSCSGG-GSHHHHHHHHGGGTTST
T ss_pred CcccCCC-CCHHHHHHHHCccCcCC
Confidence 5 4 49999999999999987
No 61
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.89 E-value=2.8e-22 Score=195.15 Aligned_cols=174 Identities=22% Similarity=0.252 Sum_probs=125.5
Q ss_pred CcccceeEEEeccCCHHHHHHHHHhhhh------------HHHHHH---------------------hhhCcchHHHHHH
Q 010184 212 FIANVQCAEVWCPMTKEFFSEYLKKENS------------KKKQAL---------------------YVMNPNKFRACEF 258 (516)
Q Consensus 212 ~l~~~~~~~v~~~~~~~~~~~~l~~~~~------------~~~~~l---------------------~~~~~~k~~~~~~ 258 (516)
.+++.....++|+|++.+...|...... .....+ ....+.|+..+..
T Consensus 24 ~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~~~~s~K~~~L~~ 103 (271)
T 1z5z_A 24 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 103 (271)
T ss_dssp ----CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCccccccCHHHHHHHH
Confidence 5778888899999999876655411000 000011 1124578999999
Q ss_pred HHHHHhhcCCCeEEEEeccHHHHHHHHHHh------CCceEecCCCHHHHHHHHHHHhcCCCcc-EEEEeCCCccccccc
Q 010184 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIP 331 (516)
Q Consensus 259 ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L------~~~~i~g~~~~~eR~~~l~~F~~~~~~~-vLv~t~~~~~GlDlp 331 (516)
++.... ..++|+||||+++..++.++..| .+..+||++++.+|.+++++|+++++++ +|++|+++++|+|+|
T Consensus 104 ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 104 IIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp HHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred HHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 987765 56899999999999999998887 2567999999999999999999986777 677899999999999
Q ss_pred ccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHH
Q 010184 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (516)
Q Consensus 332 ~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~ 398 (516)
.+++||++++|| |+..+.||+||++|+| |.+.+.+|.+++.+|+|+.+......+
T Consensus 183 ~a~~VI~~d~~w-np~~~~Q~~gR~~R~G-----------q~~~v~v~~li~~~TiEe~i~~~~~~K 237 (271)
T 1z5z_A 183 SANRVIHFDRWW-NPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQLLAFK 237 (271)
T ss_dssp TCSEEEECSCCS-CTTTC-------------------------CCEEEEEEETTSHHHHHHHHHHHC
T ss_pred cCCEEEEECCCC-ChhHHHHHHHhccccC-----------CCCceEEEEEeeCCCHHHHHHHHHHHH
Confidence 999999999887 9999999999999999 777899999999999999877655443
No 62
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.88 E-value=2.2e-21 Score=211.53 Aligned_cols=94 Identities=17% Similarity=0.293 Sum_probs=85.3
Q ss_pred cCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
..+.++||||+++..++.++..|. +.++||++++.+|.++++.|+.+ .++|||+|+++++|+|+|++++||+++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccCCCCEEEEeC
Confidence 457899999999999999999982 55789999999999999999997 999999999999999999999999987
Q ss_pred CC----CCCHHHHHHHhhcccccC
Q 010184 341 SH----AGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~~----~~s~~~~~Qr~GR~~R~g 360 (516)
.+ +.|...|+||+||++|.+
T Consensus 522 ~d~~G~p~s~~~~iQr~GRagR~~ 545 (661)
T 2d7d_A 522 ADKEGFLRSERSLIQTIGRAARNA 545 (661)
T ss_dssp TTCCTTTTSHHHHHHHHHTTTTST
T ss_pred cccccCCCCHHHHHHHhCcccCCC
Confidence 51 349999999999999975
No 63
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=1.2e-20 Score=177.08 Aligned_cols=155 Identities=21% Similarity=0.321 Sum_probs=105.3
Q ss_pred CCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhhHHH-HHHHHH
Q 010184 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQ-WAFQFK 89 (516)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Q-w~~e~~ 89 (516)
..+.++|+|||.++++.++.+. ++++.+|||+|||++++.++... ..++||+||+++|+.| |.+.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~---~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGK---NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred ccCCCCchHHHHHHHHHHhcCC---CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4456799999999999988754 89999999999999998877543 5799999999999999 999999
Q ss_pred HhhCCCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHH
Q 010184 90 LWSTIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR 163 (516)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~ 163 (516)
+|... ...+..+.|+.... .....+|+|+||+.+.....+..... ...+....+++||+||||++... .+.
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~--~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGE--DAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC---------CCCGGGCSEEEETTC-------CHH
T ss_pred HHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCccc--ccccchhcccEEEEECchhhccCCcHH
Confidence 98654 44677777664321 11347899999999865432210000 00022356899999999999765 444
Q ss_pred HHHhhc------------------ccceEEEEecc
Q 010184 164 KVISLT------------------KSHCKLGLTAT 180 (516)
Q Consensus 164 ~~l~~~------------------~~~~~l~LTAT 180 (516)
.++..+ +..++|+||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 443322 34579999998
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.84 E-value=1.8e-20 Score=176.88 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=112.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC-CC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~~ 97 (516)
.|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.... ..
T Consensus 36 ~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 112 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 112 (220)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 59999999999988764 89999999999999998877543 2489999999999999999999986543 56
Q ss_pred cEEEEeCCcccc-----c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-hhH----HHHH
Q 010184 98 QICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMF----RKVI 166 (516)
Q Consensus 98 ~v~~~~~~~~~~-----~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~----~~~l 166 (516)
.+..+.|+.... + .+..+|+|+|++.+.....+ ..+....++++|+||||++.+ ..+ ..++
T Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp CEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred eEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--------CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 788888764321 1 23468999999988653221 112235789999999999865 333 3344
Q ss_pred hhcc-cceEEEEeccCCCCc
Q 010184 167 SLTK-SHCKLGLTATLVRED 185 (516)
Q Consensus 167 ~~~~-~~~~l~LTATp~~~~ 185 (516)
..++ ..++++|||||....
T Consensus 185 ~~~~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 185 RMTPHEKQVMMFSATLSKEI 204 (220)
T ss_dssp HTSCSSSEEEEEESCCCTTT
T ss_pred HhCCCcCeEEEEEeecCHHH
Confidence 4443 457899999997543
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=1.9e-20 Score=174.79 Aligned_cols=149 Identities=16% Similarity=0.099 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC-C
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-D 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-~ 96 (516)
.+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++.... .
T Consensus 24 ~~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCCHHHHHHHHHHccCC---CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 379999999999988764 89999999999999988766432 2479999999999999999999986443 5
Q ss_pred CcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHHh
Q 010184 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~ 167 (516)
..+..+.|+... ......+|+|+|++.+.....+. .+....++++|+||||++....|. .++.
T Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 172 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIIL 172 (206)
T ss_dssp CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--------CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC--------CcCcccCCEEEEEChHHhHhhCcHHHHHHHHH
Confidence 577777776432 13456899999999885432111 112356889999999998775443 4444
Q ss_pred hcc-cceEEEEeccCCC
Q 010184 168 LTK-SHCKLGLTATLVR 183 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~~ 183 (516)
.++ ..++++||||+..
T Consensus 173 ~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 173 TLPKNRQILLYSATFPL 189 (206)
T ss_dssp HSCTTCEEEEEESCCCH
T ss_pred hCCccceEEEEEeeCCH
Confidence 444 5678999999963
No 66
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.83 E-value=1.6e-20 Score=199.18 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.|+..+..++.... ..+.++||||+++..++.++..|. ...+||+..+.+|..+.+.|+.+ .|+|||++++
T Consensus 458 eK~~al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~VtVATdmAg 533 (822)
T 3jux_A 458 EKYEKIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---CEEEEETTTT
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---eEEEEcchhh
Confidence 46676666664432 357899999999999999999993 45799986655665556666665 6999999999
Q ss_pred cccccc--------ccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 326 NSIDIP--------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 326 ~GlDlp--------~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|+|++ ...+||.++.|. |++.|.||+||+||.|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pe-s~r~y~qriGRTGRqG~ 576 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHE-SRRIDNQLRGRAGRQGD 576 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCS-SHHHHHHHHTTSSCSSC
T ss_pred CCcCccCCcchhhcCCCEEEecCCCC-CHHHHHHhhCccccCCC
Confidence 999998 556999997775 99999999999999994
No 67
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.82 E-value=3e-20 Score=175.31 Aligned_cols=149 Identities=11% Similarity=0.039 Sum_probs=111.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC--
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-- 95 (516)
.+|+|+|.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++....
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 479999999999998764 89999999999999987766432 3589999999999999999999987543
Q ss_pred --CCcEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHH
Q 010184 96 --DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRK 164 (516)
Q Consensus 96 --~~~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~ 164 (516)
...+..+.|+... .+....+|+|+|++.+.....+. .+....++++|+||||++.+.. ...
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~ 173 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--------ALDVHTAHILVVDEADLMLDMGFITDVDQ 173 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--------CCCGGGCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcC--------CCCcCcceEEEEcCchHHhhhChHHHHHH
Confidence 3466666666432 12346789999999885432110 1112567899999999987553 444
Q ss_pred HHhhcc-cceEEEEeccCCC
Q 010184 165 VISLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 165 ~l~~~~-~~~~l~LTATp~~ 183 (516)
++..++ ..++++||||+..
T Consensus 174 i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 174 IAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTSCTTCEEEEEESCCCG
T ss_pred HHHhCCcccEEEEEecCCCH
Confidence 555554 4568999999964
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.82 E-value=3e-20 Score=173.39 Aligned_cols=147 Identities=19% Similarity=0.120 Sum_probs=109.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c--------CCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~--------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
.+|+|||.++++.++++. ++++.+|||+|||++++.++.. + +.++||++|+++|+.||.+++.+++..
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 479999999999988764 8999999999999998776633 2 357999999999999999999998543
Q ss_pred CCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----HHH
Q 010184 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKV 165 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~ 165 (516)
..+..+.|+.... +....+|+|+|++.+.....+ ..+....++++|+||||++.+..| ..+
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 99 --LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp --SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred --ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--------CCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 4566676664321 224588999999988553210 112236789999999999865533 344
Q ss_pred Hhhcc-cceEEEEeccCCC
Q 010184 166 ISLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 166 l~~~~-~~~~l~LTATp~~ 183 (516)
+..++ ..+++++|||+..
T Consensus 169 ~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 169 LSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HHTSCTTSEEEEECSSCCH
T ss_pred HHhCCccCeEEEEEEecCH
Confidence 44443 4578999999964
No 69
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.82 E-value=5.3e-20 Score=175.62 Aligned_cols=150 Identities=13% Similarity=0.053 Sum_probs=112.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----------cCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
..|+|+|.+++..++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK---DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 479999999999988764 8999999999999998776532 246799999999999999999999876
Q ss_pred CCCCcEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHH
Q 010184 94 IQDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKV 165 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~ 165 (516)
..+..+..+.|+.... .....+|+|+||+.+.....+. ..+....++++|+||||++.+. .+..+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 195 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-------VSFHATDLQMLVLDEADRILDMGFADTMNAV 195 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-------SSCCCTTCCEEEETTHHHHHHTTTHHHHHHH
T ss_pred CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-------CCcccccccEEEEeChHHHhcCCcHHHHHHH
Confidence 5556788877765321 1246899999999885421100 0122357889999999998754 44555
Q ss_pred Hhhcc-cceEEEEeccCCC
Q 010184 166 ISLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 166 l~~~~-~~~~l~LTATp~~ 183 (516)
+..++ ..++++||||+..
T Consensus 196 ~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 196 IENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp HHTSCTTSEEEEEESSCCH
T ss_pred HHhCCCCCeEEEEEeeCCH
Confidence 66554 4468999999964
No 70
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.82 E-value=5.1e-20 Score=174.18 Aligned_cols=149 Identities=18% Similarity=0.128 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH-hc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|+|||.+++..++.+. ++++.+|||+|||++++.++. .+ +.++||++|+++|+.||.+++.++....+.
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 379999999999988764 899999999999999766553 22 358999999999999999999998765566
Q ss_pred cEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhhc
Q 010184 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT 169 (516)
Q Consensus 98 ~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~~ 169 (516)
.+..+.|+.... .....+|+|+|++.+.....+ ..+....++++|+||||++.+.. +..++..+
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--------CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 777777764321 112489999999988543211 11223568999999999987643 34444444
Q ss_pred c-cceEEEEeccCCC
Q 010184 170 K-SHCKLGLTATLVR 183 (516)
Q Consensus 170 ~-~~~~l~LTATp~~ 183 (516)
+ ..++++||||+..
T Consensus 184 ~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 184 PPTTQVVLLSATMPN 198 (224)
T ss_dssp CTTCEEEEEESSCCH
T ss_pred CccCeEEEEEeecCH
Confidence 3 4568999999964
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=178.68 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=112.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++....+.
T Consensus 64 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR---DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 379999999999988764 89999999999999988766432 346999999999999999999998655455
Q ss_pred cEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhh
Q 010184 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISL 168 (516)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~ 168 (516)
.+..+.|+.... +....+|+|+|++++.....+ ...+....++++|+||||++.+.. +..++..
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-------~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN-------TKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp CEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHH-------STTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHS
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-------CCCcCccccCEEEEcChhhhhccChHHHHHHHHHh
Confidence 777777764321 235689999999988543210 011223568899999999987653 3445555
Q ss_pred cc-cceEEEEeccCCC
Q 010184 169 TK-SHCKLGLTATLVR 183 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (516)
++ ..++++||||+..
T Consensus 214 ~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 214 IPRDRKTFLFSATMTK 229 (249)
T ss_dssp SCSSSEEEEEESSCCH
T ss_pred CCCCCeEEEEeccCCH
Confidence 54 4678999999974
No 72
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.82 E-value=6.2e-19 Score=188.42 Aligned_cols=67 Identities=21% Similarity=0.267 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 23 HAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+++||+|.+++..+. ..+ +++++.+|||+|||++++.++...+.+++|++||++|+.|+.+++.++
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhc
Confidence 4689999999887553 344 489999999999999999988888899999999999999999999874
No 73
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.82 E-value=1.5e-19 Score=174.37 Aligned_cols=150 Identities=17% Similarity=0.175 Sum_probs=111.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---------------CCCEEEEEeChhhHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------------KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------------~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++|||+|+++|+.||.+++
T Consensus 44 ~~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 369999999999988764 89999999999999988766321 248999999999999999999
Q ss_pred HHhhCCCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---
Q 010184 89 KLWSTIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--- 160 (516)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--- 160 (516)
.++.......+..+.|+.... +....+|+|+||+.+.....+. .+....++++|+||||++.+.
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~ 192 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--------KISLEFCKYIVLDEADRMLDMGFE 192 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--------SBCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CCChhhCCEEEEeCHHHHHhCchH
Confidence 998765556677777664321 2356899999999885532211 112356789999999998754
Q ss_pred -hHHHHHhhc--c---cceEEEEeccCCCC
Q 010184 161 -MFRKVISLT--K---SHCKLGLTATLVRE 184 (516)
Q Consensus 161 -~~~~~l~~~--~---~~~~l~LTATp~~~ 184 (516)
.+..++..+ . ..++++|||||.+.
T Consensus 193 ~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 193 PQIRKIIEESNMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp HHHHHHHHSSCCCCGGGCEEEEEESSCCHH
T ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCCHH
Confidence 344555532 2 34689999999643
No 74
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.81 E-value=6.5e-20 Score=174.08 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=108.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh------------cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~------------~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+|+|+|.++++.++.+. ++++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 379999999999988764 8999999999999998876533 3467999999999999999999998
Q ss_pred hCCCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hH
Q 010184 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (516)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~ 162 (516)
. .....+..+.|+.... +....+|+|+|++.+.....+ ..+....++++|+||||++.+. .+
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~ 188 (228)
T 3iuy_A 118 S-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--------NSVNLRSITYLVIDEADKMLDMEFEPQI 188 (228)
T ss_dssp C-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--------TCCCCTTCCEEEECCHHHHHHTTCHHHH
T ss_pred c-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcCcccceEEEEECHHHHhccchHHHH
Confidence 5 3344566666553321 235679999999988653211 1112356889999999998754 34
Q ss_pred HHHHhhcc-cceEEEEeccCCC
Q 010184 163 RKVISLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 163 ~~~l~~~~-~~~~l~LTATp~~ 183 (516)
..++..++ ..++++||||+..
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCCH
T ss_pred HHHHHhCCcCCeEEEEEeeCCH
Confidence 45555554 4578999999864
No 75
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.81 E-value=1.2e-19 Score=172.50 Aligned_cols=148 Identities=16% Similarity=0.069 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-Hhc-----CCCEEEEEeChhhHHHHHHHHHHhhCC-CCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QDD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~~ 97 (516)
.|+|||.++++.++.+. ++++.+|||+|||++++.++ ..+ +.++||++|+++|+.||.+++.++... +..
T Consensus 46 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 122 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL---DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 122 (230)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCc
Confidence 59999999999888754 89999999999999977655 332 358999999999999999999998643 356
Q ss_pred cEEEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-----hHHHHHhh
Q 010184 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISL 168 (516)
Q Consensus 98 ~v~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-----~~~~~l~~ 168 (516)
.+..+.|+.... .....+|+|+|++.+.....+ ..+....++++|+||||++.+. ....++..
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~ 194 (230)
T 2oxc_A 123 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS 194 (230)
T ss_dssp CEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--------TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--------CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHh
Confidence 788888765321 124589999999988653211 1112246789999999998654 33445555
Q ss_pred cc-cceEEEEeccCCC
Q 010184 169 TK-SHCKLGLTATLVR 183 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (516)
++ ..++++||||+..
T Consensus 195 ~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 195 LPASKQMLAVSATYPE 210 (230)
T ss_dssp SCSSCEEEEEESCCCH
T ss_pred CCCCCeEEEEEeccCH
Confidence 54 4568999999863
No 76
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.81 E-value=5.6e-20 Score=178.48 Aligned_cols=150 Identities=17% Similarity=0.125 Sum_probs=113.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----------cCCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
+|+|+|.+++..++.+. ++++++|||+|||++++.++.. .+.++||++|+++|+.||.+++.+++..
T Consensus 76 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 152 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGR---DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH 152 (262)
T ss_dssp BCCHHHHHHHHHHHHTC---CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 49999999999988864 8999999999999998876642 3567999999999999999999998766
Q ss_pred CCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH----HHH
Q 010184 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKV 165 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~----~~~ 165 (516)
....+..+.|+.... +....+|+|+|++.+.....+. ..+....+++||+||||++.+..| ..+
T Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~-------~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 225 (262)
T 3ly5_A 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNT-------PGFMYKNLQCLVIDEADRILDVGFEEELKQI 225 (262)
T ss_dssp CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHC-------TTCCCTTCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHcc-------CCcccccCCEEEEcChHHHhhhhHHHHHHHH
Confidence 666777777765421 2245789999999885432110 112235689999999999876543 445
Q ss_pred Hhhcc-cceEEEEeccCCCC
Q 010184 166 ISLTK-SHCKLGLTATLVRE 184 (516)
Q Consensus 166 l~~~~-~~~~l~LTATp~~~ 184 (516)
+..++ ..++++||||+.+.
T Consensus 226 ~~~~~~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 226 IKLLPTRRQTMLFSATQTRK 245 (262)
T ss_dssp HHHSCSSSEEEEECSSCCHH
T ss_pred HHhCCCCCeEEEEEecCCHH
Confidence 55554 35689999999753
No 77
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.80 E-value=9.5e-20 Score=174.69 Aligned_cols=148 Identities=16% Similarity=0.097 Sum_probs=111.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-----------cCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----------IKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-----------~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.|+|+|.++++.++.+. ++++.+|||+|||++++.++.. .+.++|||+|+++|+.||.+.+.++..
T Consensus 51 ~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~ 127 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCR 127 (242)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHh
Confidence 59999999999988764 8999999999999998876642 245799999999999999999998865
Q ss_pred CCCCcEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHH
Q 010184 94 IQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (516)
Q Consensus 94 ~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~ 164 (516)
.....+..+.|+.... +....+|+|+|++.+.....+ ..+....++++|+||||++... .+..
T Consensus 128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~l~~~~~~~~~~~ 199 (242)
T 3fe2_A 128 ACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--------GKTNLRRTTYLVLDEADRMLDMGFEPQIRK 199 (242)
T ss_dssp HTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSCCCTTCCEEEETTHHHHHHTTCHHHHHH
T ss_pred hcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCCCcccccEEEEeCHHHHhhhCcHHHHHH
Confidence 5556777777764321 234578999999988553211 1122357789999999998764 3445
Q ss_pred HHhhcc-cceEEEEeccCCC
Q 010184 165 VISLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 165 ~l~~~~-~~~~l~LTATp~~ 183 (516)
++..++ ..++++||||+..
T Consensus 200 i~~~~~~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 200 IVDQIRPDRQTLMWSATWPK 219 (242)
T ss_dssp HHTTSCSSCEEEEEESCCCH
T ss_pred HHHhCCccceEEEEEeecCH
Confidence 555553 4568999999864
No 78
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.80 E-value=1.2e-19 Score=173.38 Aligned_cols=148 Identities=15% Similarity=0.084 Sum_probs=107.9
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.|+|+|.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.......
T Consensus 52 ~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 128 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGY---DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT 128 (237)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCce
Confidence 59999999999988764 89999999999999988766432 3589999999999999999999987655556
Q ss_pred EEEEeCCcccc-----c-cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhh
Q 010184 99 ICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISL 168 (516)
Q Consensus 99 v~~~~~~~~~~-----~-~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~ 168 (516)
+....|+.... + .+..+|+|+||+.+.....+ ..+....+++||+||||++.+.. ...++..
T Consensus 129 ~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 129 CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--------RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp EEEECC-------------CCCSEEEECHHHHHHHHHT--------TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--------CCcCcccCcEEEECCchHhhccCcHHHHHHHHHh
Confidence 66666654321 1 23479999999988543211 11223568899999999986543 3444554
Q ss_pred cc-cceEEEEeccCCC
Q 010184 169 TK-SHCKLGLTATLVR 183 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (516)
++ ..++++||||+..
T Consensus 201 ~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 201 LNTSIQVVLLSATMPT 216 (237)
T ss_dssp SCTTCEEEEECSSCCH
T ss_pred CCCCCeEEEEEEecCH
Confidence 43 4578999999964
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.80 E-value=1.2e-19 Score=174.25 Aligned_cols=151 Identities=17% Similarity=0.130 Sum_probs=108.9
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c------CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
..|+|+|.++++.++.+. ++++.+|||+|||++++.++.. + +.++||++|+++|+.||.+++.+++...+
T Consensus 50 ~~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGR---ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 359999999999988764 8999999999999998776633 2 34799999999999999999999876555
Q ss_pred CcEEEEeCCcc------ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHH----
Q 010184 97 DQICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFR---- 163 (516)
Q Consensus 97 ~~v~~~~~~~~------~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~---- 163 (516)
..+..+.++.. .......+|+|+|++.+.....+.. ..+....++++|+||||++.+. .|.
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP------PGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS------CSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC------CCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 56666655422 1123567999999999855322110 0112256789999999998752 333
Q ss_pred HHHhhc--ccceEEEEeccCCC
Q 010184 164 KVISLT--KSHCKLGLTATLVR 183 (516)
Q Consensus 164 ~~l~~~--~~~~~l~LTATp~~ 183 (516)
.++..+ ...++++||||+..
T Consensus 201 ~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 201 SIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp HHHHHCCCTTCEEEEEESSCCH
T ss_pred HHHHhcCCCCcEEEEEeccCCH
Confidence 333332 24578999999954
No 80
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.79 E-value=1.4e-18 Score=156.17 Aligned_cols=107 Identities=21% Similarity=0.288 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|+..+..++... .+.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ ++++||+|+++
T Consensus 20 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 95 (163)
T 2hjv_A 20 ENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLVATDVA 95 (163)
T ss_dssp GGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECGGG
T ss_pred HHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 45667777777654 3679999999999999999998 356799999999999999999998 99999999999
Q ss_pred cccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|++++||+++.|+ |+..|.||+||++|.|+
T Consensus 96 ~~Gld~~~~~~Vi~~~~p~-~~~~~~qr~GR~~R~g~ 131 (163)
T 2hjv_A 96 ARGIDIENISLVINYDLPL-EKESYVHRTGRTGRAGN 131 (163)
T ss_dssp TTTCCCSCCSEEEESSCCS-SHHHHHHHTTTSSCTTC
T ss_pred hcCCchhcCCEEEEeCCCC-CHHHHHHhccccCcCCC
Confidence 9999999999999998876 99999999999999983
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=1.5e-18 Score=157.40 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=96.4
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|+..+..+++.. ++.++||||+++..++.++..| ++..+||++++.+|.++++.|+++ +.++||+|+++
T Consensus 16 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 91 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNLF 91 (172)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEESSCC
T ss_pred HHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEECCch
Confidence 45667777777654 4779999999999999999998 356799999999999999999997 99999999999
Q ss_pred cccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|++++||+++.|+ |+..|.||+||++|.|+
T Consensus 92 ~~Gldi~~~~~Vi~~d~p~-~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYDMPE-DSDTYLHRVARAGRFGT 127 (172)
T ss_dssp STTCCGGGCSEEEESSCCS-SHHHHHHHHHHHTGGGC
T ss_pred hcCcchhhCCEEEEECCCC-CHHHHHHHhcccccCCC
Confidence 9999999999999998886 99999999999999983
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.76 E-value=5.7e-18 Score=153.96 Aligned_cols=118 Identities=14% Similarity=0.248 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcc
Q 010184 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (516)
Q Consensus 252 k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~ 326 (516)
|+..+..++... ++.++||||+++..++.++..|. +..+||++++.+|.++++.|+++ .+++||+|+++++
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSCCT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecchhc
Confidence 455555666433 46799999999999999999993 56799999999999999999997 9999999999999
Q ss_pred cccccccCEEEEecCCC-----CCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 327 SIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 327 GlDlp~a~~vI~~~~~~-----~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
|+|+|.+++||+++.|| .+...|+||+||++|.|. ...++.+++.+.
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~-------------~g~~~~~~~~~~ 148 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK-------------KGLAFNMIEVDE 148 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C-------------CEEEEEEECGGG
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCC-------------CceEEEEEccch
Confidence 99999999999998773 489999999999999883 244566676554
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.76 E-value=3.7e-18 Score=153.62 Aligned_cols=105 Identities=20% Similarity=0.309 Sum_probs=92.6
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcc
Q 010184 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (516)
Q Consensus 252 k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~ 326 (516)
|...+..++..+ ++.++||||+++..++.++..|. +..+||++++.+|.++++.|+++ +.++||+|+++++
T Consensus 17 K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 17 KYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGGGTT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcChhhc
Confidence 777777777665 37899999999999999999983 56799999999999999999997 9999999999999
Q ss_pred cccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 327 GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 93 G~d~~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~g~ 126 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPA-NKENYIHRIGRGGRFGR 126 (165)
T ss_dssp TCCCCSCSEEEESSCCS-SGGGGGGSSCSCC----
T ss_pred CCCcccCCEEEEeCCCC-CHHHHHHHhcccccCCC
Confidence 99999999999998876 99999999999999983
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.75 E-value=3.6e-18 Score=156.71 Aligned_cols=109 Identities=17% Similarity=0.221 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
.+.|+..+..++... .++.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ ++++||+|++
T Consensus 29 ~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~ 105 (185)
T 2jgn_A 29 ESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAV 105 (185)
T ss_dssp GGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEEEEC-
T ss_pred cHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEcCh
Confidence 345666777777654 25789999999999999999998 356799999999999999999997 9999999999
Q ss_pred CcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++|+|+|++++||+++.|+ |+..|.||+||++|.|+
T Consensus 106 ~~~Gldi~~~~~VI~~d~p~-s~~~~~Qr~GR~~R~g~ 142 (185)
T 2jgn_A 106 AARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGN 142 (185)
T ss_dssp -----CCCSBSEEEESSCCS-SHHHHHHHHTTBCCTTS
T ss_pred hhcCCCcccCCEEEEeCCCC-CHHHHHHHccccCCCCC
Confidence 99999999999999998886 99999999999999983
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.75 E-value=7.8e-18 Score=157.93 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=97.3
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
...|+..+..++.... +.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ ..+|||+|++
T Consensus 15 ~~~k~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vlvaT~~ 90 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVLVATDV 90 (212)
T ss_dssp TTSHHHHHHHHHHHHC---CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEEEECTT
T ss_pred HHHHHHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEEEecCh
Confidence 4567788888887543 779999999999999999988 356799999999999999999998 9999999999
Q ss_pred CcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~ 127 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPD-RAEAYQHRSGRTGRAGR 127 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCS-SHHHHHHHHTTBCCCC-
T ss_pred hhcCCCCccCcEEEECCCCc-CHHHHHHHhcccCCCCC
Confidence 99999999999999998876 99999999999999983
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.74 E-value=1.7e-17 Score=152.86 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=90.2
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.|...+..++. ..+.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ ++++||+|++++
T Consensus 41 ~K~~~L~~~l~----~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~ 115 (191)
T 2p6n_A 41 AKMVYLLECLQ----KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLVATDVAS 115 (191)
T ss_dssp GHHHHHHHHHT----TSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEEECHHHH
T ss_pred HHHHHHHHHHH----hCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEEEcCchh
Confidence 45555555543 33568999999999999999998 356799999999999999999998 999999999999
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|+|+|++++||+++.++ |+..|+||+||++|.|.
T Consensus 116 ~Gldi~~v~~VI~~d~p~-~~~~~~qr~GR~gR~g~ 150 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDMPE-EIENYVHRIGRTGCSGN 150 (191)
T ss_dssp TTCCCCCCSEEEESSCCS-SHHHHHHHHTTSCC---
T ss_pred cCCCcccCCEEEEeCCCC-CHHHHHHHhCccccCCC
Confidence 999999999999998876 99999999999999983
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=164.28 Aligned_cols=152 Identities=18% Similarity=0.189 Sum_probs=109.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH-hcC-----CCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-----KSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~~-----~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
..|+|+|.++++.++.+ .+++.++.+|||+|||++++.++. .+. .++|||+|+++|+.|+.+.+..+... +.
T Consensus 113 ~~pt~iQ~~ai~~il~~-~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAE-PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp CSCCHHHHHHHHHHTSS-SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHcC-CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 46999999999988875 125899999999999999886653 321 26999999999999999999988653 34
Q ss_pred CcEEEEeCCccc--cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-hhHH----HHHhhc
Q 010184 97 DQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFR----KVISLT 169 (516)
Q Consensus 97 ~~v~~~~~~~~~--~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-~~~~----~~l~~~ 169 (516)
..+....++... ......+|+|+||+.+.....+. ..+....++++|+||||++.. ..|. .++..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-------~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-------CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred cEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-------CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 566766665432 12345789999999885533210 111124678999999999875 3443 344444
Q ss_pred c-cceEEEEeccCCC
Q 010184 170 K-SHCKLGLTATLVR 183 (516)
Q Consensus 170 ~-~~~~l~LTATp~~ 183 (516)
+ ..+++++|||+..
T Consensus 265 ~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 265 PRNCQMLLFSATFED 279 (300)
T ss_dssp CTTCEEEEEESCCCH
T ss_pred CCCCEEEEEeccCCH
Confidence 3 3568999999974
No 88
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.71 E-value=2.9e-15 Score=160.54 Aligned_cols=126 Identities=17% Similarity=0.152 Sum_probs=92.8
Q ss_pred CCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEE
Q 010184 24 AQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~ 100 (516)
+++||+|.+.+..+. ..+ +++++.+|||+|||++++.++...+.+++|++||++|+.|+.+++..+.......+.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 579999999887654 344 489999999999999999988887889999999999999999999887444344555
Q ss_pred EEeCCcc--------------------------------------------------------ccccCCCcEEEEchhhh
Q 010184 101 RFTSDSK--------------------------------------------------------ERFRGNAGVVVTTYNMV 124 (516)
Q Consensus 101 ~~~~~~~--------------------------------------------------------~~~~~~~~IvV~T~~~l 124 (516)
.+.|... ......++|||+||+.+
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 5555211 00013579999999999
Q ss_pred hccCCCChhHHHHHHHHc-cCCccEEEEccCccCCc
Q 010184 125 AFGGKRSEESEKIIEEIR-NREWGLLLMDEVHVVPA 159 (516)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~-~~~~~~vIlDEaH~~~~ 159 (516)
..... ...+. ..+..++|+||||++.+
T Consensus 160 ~~~~~--------~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 160 FIDRY--------REFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HCHHH--------HTTSCCCSTTEEEEETTGGGGGG
T ss_pred cCHHH--------HHhcCCCcCCeEEEEecccchHH
Confidence 76311 11111 13456899999999875
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.52 E-value=1.6e-18 Score=156.92 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=95.7
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|...+..++... .+.++||||+++..++.++..| ++..+||++++.+|.++++.|+++ ++++||+|+++
T Consensus 15 ~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVA 90 (170)
Confidence 45667777777543 3679999999999999999998 356899999999999999999997 99999999999
Q ss_pred cccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~-~~~~~~qr~GR~~R~g~ 126 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPR-SGDTYLHRIGRTARAGR 126 (170)
Confidence 9999999999999998776 99999999999999983
No 90
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.69 E-value=8.8e-17 Score=158.22 Aligned_cols=109 Identities=20% Similarity=0.313 Sum_probs=95.4
Q ss_pred hCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC
Q 010184 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (516)
Q Consensus 248 ~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~ 322 (516)
....|+..+..++..+. +.++||||+++..++.++..| .+..+||++++.+|..+++.|+++ ..+|||+|+
T Consensus 11 ~~~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLVaT~ 86 (300)
T 3i32_A 11 PVRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLVATD 86 (300)
T ss_dssp CSSSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEEECS
T ss_pred CHHHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEec
Confidence 34568888888887654 789999999999999999998 355799999999999999999998 999999999
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++++|+|+|++++||+++.++ |+..|.||+||+||.|.
T Consensus 87 va~~Gidi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 87 VAARGLDIPQVDLVVHYRMPD-RAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp TTTCSTTCCCCSEEEESSCCS-STTHHHHHHTCCC----
T ss_pred hhhcCccccceeEEEEcCCCC-CHHHHHHHccCcCcCCC
Confidence 999999999999999998876 99999999999999983
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.63 E-value=2.5e-15 Score=162.51 Aligned_cols=126 Identities=16% Similarity=0.035 Sum_probs=90.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
.+.++|.|..++..++.+. |..+.||+|||+++..++. ..++.++||+||..|+.|..+.+..++...+..+
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~-----IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK-----IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS-----EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcHHHHhhcccccCCc-----eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 3578999999999877642 8899999999999987762 2357899999999999998877777665556678
Q ss_pred EEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHH----HHHccC---CccEEEEccCccCC
Q 010184 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKII----EEIRNR---EWGLLLMDEVHVVP 158 (516)
Q Consensus 100 ~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~----~~l~~~---~~~~vIlDEaH~~~ 158 (516)
..+.|+.... ....++|+++|++.+....- ...+ +.+... ...++|+||+|.+.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyL-----rd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYL-----RDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHH-----HHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHH-----HHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 8888775421 12358999999988731100 0000 112224 68899999999754
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.56 E-value=6e-14 Score=133.54 Aligned_cols=146 Identities=14% Similarity=0.047 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cC----CCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK----KSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~----~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..++++|.+++..+..+. ..++.+|||+|||.+...++.. .+ ..+++++|+++++.|..+.+...++..
T Consensus 60 ~p~~~~q~~~i~~i~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 60 LPVKKFESEILEAISQNS---VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp SGGGGGHHHHHHHHHHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred CChHHHHHHHHHHHhcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 468999999999887764 8999999999999765554422 12 379999999999999999998776543
Q ss_pred C-CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccC-Cch-----hHHHHHhh
Q 010184 96 D-DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAH-----MFRKVISL 168 (516)
Q Consensus 96 ~-~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~-~~~-----~~~~~l~~ 168 (516)
. ..++.-............+|+|+|++++.... .. .-..+++||+||||.. ... ..+.++..
T Consensus 137 ~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l----------~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 137 PGKSCGYSVRFESILPRPHASIMFCTVGVLLRKL----------EA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp TTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHH----------HH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred cCceEEEeechhhccCCCCCeEEEECHHHHHHHH----------Hh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 2 23332222111111245789999999885431 11 1367899999999985 332 22334444
Q ss_pred cccceEEEEeccCCC
Q 010184 169 TKSHCKLGLTATLVR 183 (516)
Q Consensus 169 ~~~~~~l~LTATp~~ 183 (516)
.+..+.+++|||+..
T Consensus 206 ~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 206 YPEVRIVLMSATIDT 220 (235)
T ss_dssp CTTSEEEEEECSSCC
T ss_pred CCCCeEEEEecCCCH
Confidence 455678999999964
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.44 E-value=3e-12 Score=138.48 Aligned_cols=67 Identities=19% Similarity=0.259 Sum_probs=53.6
Q ss_pred CCCCHHHHHHHHHHH---hCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 24 AQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
+++||+|.+.+..+. ..+ +++++.+|||+|||++++.++.. .+.+++|++||+++..|+.+++.++.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~--~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKS--YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHS--SEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 578999999988653 333 48999999999999999876643 36899999999999999999988753
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.33 E-value=3.6e-12 Score=124.39 Aligned_cols=128 Identities=15% Similarity=0.075 Sum_probs=95.2
Q ss_pred hhCcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010184 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (516)
Q Consensus 247 ~~~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t 321 (516)
+..++|+.+++.|+.... ..++|++|||+++..++.+..++. +..++|.....+ .+. .+ .++.+.+.|
T Consensus 105 ~~~SGKf~~L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~-~~~~i~Llt 177 (328)
T 3hgt_A 105 AENSGKFSVLRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----ND-FSCTVHLFS 177 (328)
T ss_dssp HHTCHHHHHHHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------C-CSEEEEEEE
T ss_pred HHcCccHHHHHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----cc-CCceEEEEE
Confidence 348899999999998887 789999999999999999999993 346888865432 111 12 255555557
Q ss_pred CCCccccc-----ccccCEEEEecCCCCCHHHH-HHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 322 KVGDNSID-----IPEANVIIQISSHAGSRRQE-AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 322 ~~~~~GlD-----lp~a~~vI~~~~~~~s~~~~-~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
.+|+-|+| +..+|+||.+|+.| |+... +|++.|++|.+.+ |++.+.+|+|++.+|+|+..
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~Dsdw-Np~~d~iQa~~r~~R~~~g---------q~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTV-DTSQKDIQYLLQYKRERKG---------LERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTC-CTTSHHHHHHHCCC------------------CCEEEEEETTSHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCC-CCCChHHHHHHHHhhhccC---------CCCcceEEEEeCCCCHHHHH
Confidence 88888886 78999999999998 77776 9999999999632 67889999999999999844
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.33 E-value=3.2e-06 Score=90.31 Aligned_cols=128 Identities=13% Similarity=0.091 Sum_probs=86.9
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
...|.+.|.+++..++..+ ..+|.++.|+|||.+...++. ..+.++++++||...+....+.+ +..
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~---~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~----~~~---- 255 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHR---LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT----GRT---- 255 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCS---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH----TSC----
T ss_pred cCCCCHHHHHHHHHHHhCC---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh----ccc----
Confidence 5679999999999887654 889999999999987766553 45689999999998665443322 211
Q ss_pred EEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEec
Q 010184 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (516)
Q Consensus 100 ~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTA 179 (516)
..|...+..... . ... ...-....+++||+||++.+....+..++..++...++.|.|
T Consensus 256 ------------------a~Tih~ll~~~~-~-~~~--~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 256 ------------------ASTVHRLLGYGP-Q-GFR--HNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp ------------------EEEHHHHTTEET-T-EES--CSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred ------------------HHHHHHHHcCCc-c-hhh--hhhcccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEe
Confidence 111111110000 0 000 000012467899999999999999999999888788899988
Q ss_pred cCCC
Q 010184 180 TLVR 183 (516)
Q Consensus 180 Tp~~ 183 (516)
-|.+
T Consensus 314 D~~Q 317 (574)
T 3e1s_A 314 DTDQ 317 (574)
T ss_dssp CTTS
T ss_pred cccc
Confidence 8765
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.29 E-value=1.8e-05 Score=85.72 Aligned_cols=65 Identities=17% Similarity=0.181 Sum_probs=54.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..|.+.|.+|+..++..+ ..+|.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~~~---~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCS---EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCC---CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999988653 7899999999999987766543 3578999999999899888887653
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.22 E-value=2.2e-06 Score=93.34 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=55.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..|-+.|.+|+..++... .-.+|.+|+|+|||.+.+.++.. .+.++|+++||..-+++..+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999998754 26899999999999988776644 4689999999999899988887654
No 98
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.20 E-value=2.7e-06 Score=91.66 Aligned_cols=140 Identities=12% Similarity=0.083 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---Hh----cCCCEEEEEeChhhHHHHHHHHHHhh---CCCC
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CR----IKKSCLCLATNAVSVDQWAFQFKLWS---TIQD 96 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~---~~~~ 96 (516)
.+.|.+|+..++.++ ..++.+++|+|||.+...++ .. .+.++++++||..++.+..+.+..+. ++..
T Consensus 151 ~~~Q~~Ai~~~l~~~---~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBS---EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 578999999888654 89999999999996554433 22 23589999999999998877766532 2111
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEE
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~ 176 (516)
. ..... ..-..|...+........... ........++++|+||++.+..+.+..++..++...++.
T Consensus 228 ~--------~~~~~----~~~~~Tih~ll~~~~~~~~~~--~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~li 293 (608)
T 1w36_D 228 E--------QKKRI----PEDASTLHRLLGAQPGSQRLR--HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVI 293 (608)
T ss_dssp C--------CCCSC----SCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEEE
T ss_pred H--------HHhcc----chhhhhhHhhhccCCCchHHH--hccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEEE
Confidence 0 00000 001122222111000000000 000012367899999999888788888999888888888
Q ss_pred EeccCCC
Q 010184 177 LTATLVR 183 (516)
Q Consensus 177 LTATp~~ 183 (516)
|-|=|.+
T Consensus 294 LvGD~~Q 300 (608)
T 1w36_D 294 FLGDRDQ 300 (608)
T ss_dssp EEECTTS
T ss_pred EEcchhh
Confidence 8887654
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.19 E-value=1.7e-05 Score=87.85 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..|.+.|.+|+..++..+ ..+|.+|+|+|||.+...++.. .+.++|+++||...+++..+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRP---LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCS---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 468999999999887643 6899999999999887766543 3679999999999899988888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.07 E-value=5.9e-05 Score=83.50 Aligned_cols=66 Identities=17% Similarity=0.169 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
...|.+.|.+|+..++..+ ..+|.+|+|+|||.+...++.. .+.++|+++||...+.+..+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSS---EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCC---eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3568999999999988654 7899999999999887766543 3578999999999888888877653
No 101
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=3.4e-05 Score=80.34 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=83.4
Q ss_pred CCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhc---C-CCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI---K-KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~---~-~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
-.|.+.|.+++..++.. ...+..+|.++.|+|||.+...++..+ + .++++++||...+....+.+ +..
T Consensus 24 ~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~~~-- 97 (459)
T 3upu_A 24 DDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----GKE-- 97 (459)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----SSC--
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----ccc--
Confidence 46999999999976543 111388999999999998877666443 3 37999999987665444333 211
Q ss_pred cEEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEE
Q 010184 98 QICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175 (516)
Q Consensus 98 ~v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l 175 (516)
+..+++-.... .......+.... . . ....++++|+||+|.+....+..++..+.....+
T Consensus 98 -~~T~h~~~~~~~~~~~~~~~~~~~~-------~---------~--~~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~~ 158 (459)
T 3upu_A 98 -ASTIHSILKINPVTYEENVLFEQKE-------V---------P--DLAKCRVLICDEVSMYDRKLFKILLSTIPPWCTI 158 (459)
T ss_dssp -EEEHHHHHTEEEEECSSCEEEEECS-------C---------C--CCSSCSEEEESCGGGCCHHHHHHHHHHSCTTCEE
T ss_pred -hhhHHHHhccCcccccccchhcccc-------c---------c--cccCCCEEEEECchhCCHHHHHHHHHhccCCCEE
Confidence 11111100000 000011111100 0 0 0146789999999999888888888887767778
Q ss_pred EEeccCCC
Q 010184 176 GLTATLVR 183 (516)
Q Consensus 176 ~LTATp~~ 183 (516)
.+.|=+.+
T Consensus 159 ~~vGD~~Q 166 (459)
T 3upu_A 159 IGIGDNKQ 166 (459)
T ss_dssp EEEECTTS
T ss_pred EEECCHHH
Confidence 88877654
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.71 E-value=0.0006 Score=68.68 Aligned_cols=142 Identities=16% Similarity=0.174 Sum_probs=87.6
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-----cCCCEEEEEeChhhHHHHHHHHHHhhCCCCC-
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~- 97 (516)
+.|.|||...+..+... +..++..+-+.|||.++...+.. .+.++++++|+..-+..+.+.+..+....+.
T Consensus 162 ~~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~l 238 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (385)
T ss_dssp CCCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHh
Confidence 68999999999876432 46889999999999876554322 2357999999998777777777766432111
Q ss_pred ---cEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--hhHHHHHhhccc-
Q 010184 98 ---QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS- 171 (516)
Q Consensus 98 ---~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~l~~~~~- 171 (516)
.+...+ ...-.+..+..|.+.+-+ -+.+......++|+||+|..++ ..+..+...+..
T Consensus 239 l~~~~~~~~-~~~I~f~nGs~i~~lsa~---------------~~slrG~~~~~viiDE~a~~~~~~el~~al~~~ls~~ 302 (385)
T 2o0j_A 239 LQPGIVEWN-KGSIELDNGSSIGAYASS---------------PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSG 302 (385)
T ss_dssp TSCCEEEEC-SSEEEETTSCEEEEEECS---------------HHHHHTSCCSEEEEESGGGSTTHHHHHHHHHHHHHST
T ss_pred hhhhhccCC-ccEEEeCCCCEEEEEECC---------------CCCccCCCCCEEEechhhhcCCCHHHHHHHHHHhhcC
Confidence 111111 111112222333332210 1334457788999999999985 345444333332
Q ss_pred -ceEEEEeccCCCC
Q 010184 172 -HCKLGLTATLVRE 184 (516)
Q Consensus 172 -~~~l~LTATp~~~ 184 (516)
..++.+..||...
T Consensus 303 ~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 303 RRSKIIITTTPNGL 316 (385)
T ss_dssp TCCEEEEEECCCSS
T ss_pred CCCcEEEEeCCCCc
Confidence 3577888888654
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.67 E-value=0.0001 Score=75.34 Aligned_cols=109 Identities=11% Similarity=-0.027 Sum_probs=76.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l 124 (516)
-.++.++.|+|||......+.. ++.+|++|+++++..|.+.+.+. +.. ....+-|.|++.+
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~aa~~l~~kl~~~-~~~----------------~~~~~~V~T~dsf 223 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQAAEMIRRRANAS-GII----------------VATKDNVRTVDSF 223 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHHHHHHHHHHHTTT-SCC----------------CCCTTTEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHHHHHHHHHHhhhc-Ccc----------------ccccceEEEeHHh
Confidence 4578899999999988766532 68999999999999999988542 110 0112348888766
Q ss_pred hccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccCCC
Q 010184 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (516)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (516)
...... ......+++|+||+-.+....+..++..++. .++.|.|=|.+
T Consensus 224 L~~~~~----------~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 224 LMNYGK----------GARCQFKRLFIDEGLMLHTGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp HHTTTS----------SCCCCCSEEEEETGGGSCHHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred hcCCCC----------CCCCcCCEEEEeCcccCCHHHHHHHHHhCCC-CEEEEecCccc
Confidence 432110 0012378999999999988777777776665 67777777754
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.53 E-value=0.0014 Score=70.18 Aligned_cols=142 Identities=18% Similarity=0.198 Sum_probs=87.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH----Hh-cCCCEEEEEeChhhHHHHHHHHHHhhCCCCC-
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CR-IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~-~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~- 97 (516)
+.|.|||...+..+... +..++..+-|.|||.++...+ .. .+.++++++|+...+..+.+.++.+....+.
T Consensus 162 ~~l~p~Q~~i~~~l~~~---r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~ 238 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (592)
T ss_dssp CCCCHHHHHHHHHHHHC---SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTT
T ss_pred CcCCHHHHHHHHhhccc---cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHh
Confidence 67999999999877332 478999999999998765433 11 2347999999999888888888776543221
Q ss_pred -c--EEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--hhHHHHHhhccc-
Q 010184 98 -Q--ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS- 171 (516)
Q Consensus 98 -~--v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~l~~~~~- 171 (516)
. +...+ ...-.+.++..|.+.+- + -..+.....+++|+||+|..+. ..+..+...+..
T Consensus 239 ~~~~~~~~~-~~~i~~~nGs~i~~~s~-----------~----~~~lrG~~~~~~iiDE~~~~~~~~~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 239 LQPGIVEWN-KGSIELDNGSSIGAYAS-----------S----PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSG 302 (592)
T ss_dssp TSCCEEEEC-SSEEEETTSCEEEEEEC-----------C----HHHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSSS
T ss_pred hccccccCC-ccEEEecCCCEEEEEeC-----------C----CCCccCCCcceEEEehhccCCchhHHHHHHHHHhccC
Confidence 1 11111 11111222233332211 0 1223345678999999999987 445544444432
Q ss_pred -ceEEEEeccCCCC
Q 010184 172 -HCKLGLTATLVRE 184 (516)
Q Consensus 172 -~~~l~LTATp~~~ 184 (516)
..++.++.||...
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 3578888899654
No 105
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.46 E-value=0.00028 Score=76.60 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----C---CCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
.|.+.|.+++.. .. +..+|.++.|+|||.+.+.-+..+ + .++|++++|...+.+..+.+.+..+.
T Consensus 9 ~Ln~~Q~~av~~--~~---~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 9 SLNDKQREAVAA--PR---SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TCCHHHHHHHTC--CS---SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHhC--CC---CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 689999999972 12 378999999999999887644321 1 57999999999999999999887543
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.18 E-value=0.0015 Score=59.86 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=26.6
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
-++.+|||+|||..++..+.+ .+++++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 357899999999999887754 4689999999764
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.15 E-value=0.0019 Score=58.08 Aligned_cols=34 Identities=21% Similarity=0.060 Sum_probs=27.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeCh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~ 78 (516)
-.++.+|+|+|||..++..+.. .+.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4678999999999998877654 357899999874
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.14 E-value=0.0015 Score=59.09 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=28.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeCh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~ 78 (516)
+-.++.+|||+|||..++..+.+. +.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 355778999999999998877553 68999999974
No 109
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.13 E-value=0.0011 Score=68.58 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=33.0
Q ss_pred HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
..+..++..+...+.+|.+|+|+|||.++-.++.....++.-+.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 34555666665567899999999999999988888776655443
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.12 E-value=0.00057 Score=63.56 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=28.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (516)
.-.++.+|||+|||..++..+.+. +.+++++.|...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 355777999999999998877554 578999988763
No 111
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.97 E-value=0.0031 Score=55.88 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-++.+.+.+...+.....++.+|.+|+|+|||..+-.++...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 26 GRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 355566666666665555678999999999999988777554
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.95 E-value=0.006 Score=59.84 Aligned_cols=53 Identities=11% Similarity=0.235 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEE-EecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.-.+...+.+..++..+...+.++ .+|+|+|||.++-.++...+.+++.+-++
T Consensus 29 vg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 29 ILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp CCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 345666777777777654445544 46699999999999888887666655543
No 113
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.93 E-value=0.0058 Score=60.47 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=33.2
Q ss_pred CCHHHHHHHHHHH---hCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 26 PRPYQEKSLSKMF---GNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 26 Lr~yQ~~al~~~~---~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+.|+|.++++.+. .+++ ++..++.+|.|+|||.++..++..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 6899998877653 3443 34578899999999999998887654
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.90 E-value=0.0063 Score=54.00 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-++-+.+.+...+..+..+..+|.+|+|+|||..+-.++...
T Consensus 26 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 456666666666666555688999999999999987776553
No 115
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.83 E-value=0.0035 Score=61.70 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
++.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 468999999999999999998888777766644
No 116
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.79 E-value=0.016 Score=56.89 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=30.3
Q ss_pred HHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe
Q 010184 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (516)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (516)
+..+.... .....+|.+|+|+|||..+-.++... +.+++++..
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 44444442 23578999999999999988877655 567776653
No 117
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.66 E-value=0.0048 Score=62.40 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.++.+|.+|+|+|||.++-+++...+.+++.+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 3578999999999999999998887777766654
No 118
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.65 E-value=0.016 Score=52.58 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-++...+.+..++..+.....+|.+|+|+|||..+-.++...
T Consensus 21 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 21 GQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp SCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 456667777777776554568999999999999887776553
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.65 E-value=0.0094 Score=59.72 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHh----CCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+--|+.+.+.+..++. .+..+..+|.+|+|+|||.++-.++...
T Consensus 22 l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 22 IPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 4456777766664443 3444578999999999999988877654
No 120
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.64 E-value=0.0051 Score=58.79 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
..++.+|.+|+|+|||.++-.++...+.+++.+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 3467899999999999999998888777766654
No 121
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.60 E-value=0.011 Score=54.17 Aligned_cols=36 Identities=17% Similarity=-0.000 Sum_probs=26.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
.--++.+|||+|||...+..+.+ .+.+++|+.|...
T Consensus 29 ~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 29 WIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 34578899999999877766533 3578999999764
No 122
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.52 E-value=0.004 Score=59.83 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.5
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
..++.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 44578999999999999999988888777666543
No 123
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.48 E-value=0.013 Score=51.95 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHH---hC---CCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHH
Q 010184 27 RPYQEKSLSKMF---GN---GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQ 87 (516)
Q Consensus 27 r~yQ~~al~~~~---~~---~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e 87 (516)
.+.|.+++..+. .+ ..+...+|.+|+|+|||..+-.++... +.+++++ +...+...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 85 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHL 85 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 467888887653 22 123477889999999999887766443 3344443 344445544433
No 124
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.48 E-value=0.0049 Score=63.57 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=26.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc-CCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P 76 (516)
.++.+|.+|+|+|||.++-+++... +.+++.+..
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~ 201 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 201 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeH
Confidence 3578999999999999999998887 444444433
No 125
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.42 E-value=0.011 Score=56.03 Aligned_cols=32 Identities=19% Similarity=0.261 Sum_probs=24.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC---CCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~ 75 (516)
.+.+|.+|+|+|||.++-.+..... .+++.+-
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 5889999999999999888776654 4555543
No 126
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.39 E-value=0.015 Score=57.32 Aligned_cols=48 Identities=15% Similarity=0.154 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHh-----CCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 27 RPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 27 r~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
++...+.+..++. .....+.+|.+|+|+|||.++-.++...+.+++.+
T Consensus 34 ~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 34 QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 4445555554443 22335789999999999999998888877765544
No 127
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.39 E-value=0.0037 Score=62.45 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=27.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
++.+|.+|+|+|||.++-+++...+.+++.+.
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 46889999999999999999988887776664
No 128
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.37 E-value=0.025 Score=54.83 Aligned_cols=24 Identities=21% Similarity=0.116 Sum_probs=20.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+.+|.+|+|+|||.++-.++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999998776554
No 129
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.33 E-value=0.0025 Score=62.78 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=26.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-CCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P 76 (516)
+..+|.+|+|+|||..+-+++... +.+++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 578899999999999999998887 445544443
No 130
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.33 E-value=0.0046 Score=52.96 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=20.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.+|.+|+|+|||.++-.+.....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 5899999999999998876655444
No 131
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.31 E-value=0.024 Score=55.25 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=25.9
Q ss_pred HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH
Q 010184 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (516)
+.+...+.+++....++.+|.|+|||..+..++.
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3445556665556789999999999998888775
No 132
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.29 E-value=0.029 Score=56.13 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHHHhC----CCCc--ccEEEecCCCcHHHHHHHHHHhcC----CCEEEEE
Q 010184 24 AQPRPYQEKSLSKMFGN----GRAR--SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLA 75 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~----~~~~--~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~ 75 (516)
+.=|+.+.+.+..++.. +.+. ..+|.+|+|+|||..+-.++.... .+++.+-
T Consensus 19 l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 19 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 34467777666655543 3334 688999999999999888776653 3455554
No 133
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.23 E-value=0.013 Score=62.85 Aligned_cols=120 Identities=20% Similarity=0.251 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~ 102 (516)
...+.+-|.+++..++.... ...+|.++-|-|||...-.++......++|.+|+..-+. ...+|.. .
T Consensus 173 ~~~~T~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~-~l~~~~~---~-------- 239 (671)
T 2zpa_A 173 TGAPQPEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTD-VLAQFAG---E-------- 239 (671)
T ss_dssp CSSCCHHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCH-HHHHHHG---G--------
T ss_pred CCCCCHHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHH-HHHHHhh---C--------
Confidence 45788899999998876421 356899999999997766667777778899999987444 3333321 0
Q ss_pred eCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceEEEEeccCC
Q 010184 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 103 ~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~ 182 (516)
.|-...|+.+ ... ....+++|||||=.++.+...+++.. ..++.||.|..
T Consensus 240 ------------~i~~~~Pd~~-------------~~~--~~~~dlliVDEAAaIp~pll~~ll~~---~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ------------KFRFIAPDAL-------------LAS--DEQADWLVVDEAAAIPAPLLHQLVSR---FPRTLLTTTVQ 289 (671)
T ss_dssp ------------GCCBCCHHHH-------------HHS--CCCCSEEEEETGGGSCHHHHHHHHTT---SSEEEEEEEBS
T ss_pred ------------CeEEeCchhh-------------hhC--cccCCEEEEEchhcCCHHHHHHHHhh---CCeEEEEecCC
Confidence 0112233222 111 24578999999999999998887773 33688888876
Q ss_pred CCc
Q 010184 183 RED 185 (516)
Q Consensus 183 ~~~ 185 (516)
...
T Consensus 290 GYE 292 (671)
T 2zpa_A 290 GYE 292 (671)
T ss_dssp STT
T ss_pred cCC
Confidence 543
No 134
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.18 E-value=0.0065 Score=61.23 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.1
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
.+++.+|.+|+|+|||+.+-+++...+.+++.+..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 4578899999999999999999999998888877654
No 135
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.18 E-value=0.016 Score=53.71 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=28.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
.--++.++||+|||..++..+.+ .+++++++-|...
T Consensus 20 ~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 20 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 35577899999999988877644 3679999999874
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.17 E-value=0.016 Score=56.39 Aligned_cols=42 Identities=19% Similarity=0.093 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-++...+.+..++..+.....++.+|.|+|||..+-.++..+
T Consensus 25 g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 25 GNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp SCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 355666777777777654458999999999999988877654
No 137
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.12 E-value=0.0089 Score=59.70 Aligned_cols=35 Identities=20% Similarity=0.397 Sum_probs=28.6
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
..+..+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 34678999999999999999998888777666554
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.10 E-value=0.027 Score=54.79 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++...+.+..++..+...+.++.+|+|+|||.++-.++..+
T Consensus 30 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 30 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 56666677777776654468999999999999988877654
No 139
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.0051 Score=60.93 Aligned_cols=39 Identities=15% Similarity=0.136 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+.+..++..+...+.+|.+|+|+|||..+-.++..+
T Consensus 44 ~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 44 HAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp TTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 345566666666544468999999999999988777553
No 140
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.07 E-value=0.0069 Score=56.15 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+.+..+...+..+..+|.+|+|+|||..+-.++...
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 334445555554445688999999999999887776543
No 141
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.02 E-value=0.047 Score=53.16 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHh-----CCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 26 PRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 26 Lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
-++...+.+..++. .......+|.+|+|+|||..+-.++...+.+++++
T Consensus 16 g~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 16 GQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34555555554443 12335889999999999999988887766665543
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.01 E-value=0.062 Score=49.24 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=31.4
Q ss_pred CCCHHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
--++...+.+..++..+. ++..+|.+|.|+|||..+-.++...
T Consensus 26 ~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 26 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346667777777776543 2357899999999999888777554
No 143
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.99 E-value=0.088 Score=53.99 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=25.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P 76 (516)
....+|.+|+|+|||..+-+++... +.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4578999999999999887776554 455665543
No 144
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.96 E-value=0.011 Score=55.67 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=28.1
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.++.+|.+|+|+|||..+-.++...+.+++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechH
Confidence 34678999999999999998888877777666543
No 145
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.86 E-value=0.026 Score=50.86 Aligned_cols=34 Identities=21% Similarity=0.207 Sum_probs=26.3
Q ss_pred cccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATN 77 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~ 77 (516)
.-.++.+|||+|||...+..+. ..+++++++.|.
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 4567889999999976666553 346899999987
No 146
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.82 E-value=0.0096 Score=51.03 Aligned_cols=24 Identities=8% Similarity=-0.231 Sum_probs=20.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+.+|.+|+|+|||.++-.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999998776554
No 147
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.79 E-value=0.007 Score=61.84 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.1
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.+++.+|.+|+|+|||+.+-+++...+.+++.+..+
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s 249 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPAS 249 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehh
Confidence 457889999999999999999999999888877654
No 148
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.78 E-value=0.03 Score=58.12 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=62.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcc-----------------
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK----------------- 107 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~----------------- 107 (516)
...+.+-+|+|||++...++...++++|||||+...+.||+++|+.|++ . .|..|-+...
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~--~-~v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD--Q-MVMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCS--S-CEEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCC--C-cEEEEeCcccccccccCCChHHHHHHH
Confidence 5688899999999999999988899999999999999999999999854 2 2655543210
Q ss_pred ----ccccCCCcEEEEchhhhhccC
Q 010184 108 ----ERFRGNAGVVVTTYNMVAFGG 128 (516)
Q Consensus 108 ----~~~~~~~~IvV~T~~~l~~~~ 128 (516)
....+...|+|+|.+.+....
T Consensus 93 ~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred HHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 001345679999998887643
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.75 E-value=0.054 Score=53.93 Aligned_cols=44 Identities=16% Similarity=0.257 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHHh----CCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.-|+.+.+.+..++. .+..+..+|.+|+|+|||..+-.++...
T Consensus 21 ~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 21 LPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3447777777776653 2344678999999999999988777655
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.74 E-value=0.014 Score=59.81 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=31.0
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.+++.+|.+|+|+|||+.+-+++...+.+++.+..+
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s 277 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGS 277 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhH
Confidence 457888899999999999999999998888777654
No 151
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.74 E-value=0.012 Score=59.07 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.+.+|.+|+|+|||.++-.++...+.+++.+-
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 47899999999999999999888877766553
No 152
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.74 E-value=0.02 Score=55.60 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=27.5
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.+..+|.+|+|+|||.++-+++...+.+++.+-
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 457889999999999999999888877766654
No 153
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.71 E-value=0.039 Score=53.93 Aligned_cols=41 Identities=5% Similarity=-0.165 Sum_probs=29.0
Q ss_pred CHHHHHHHHH----HHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSK----MFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~----~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|+-|.+.+.. .+..+.+.+.+|.+|+|+|||.++-.++..+
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3345444443 3445566788999999999999998887665
No 154
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.69 E-value=0.02 Score=62.26 Aligned_cols=81 Identities=10% Similarity=0.169 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hc---CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~---~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.|.|.|.+++... . +..+|.++.|+|||.+.+.-+. .. ..++|+|+.|...+.+.++.+.+..+..
T Consensus 2 ~L~~~Q~~av~~~--~---~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~-- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK-- 74 (673)
T ss_dssp CCCHHHHHHHHCC--S---SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT--
T ss_pred CCCHHHHHHHhCC--C---CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc--
Confidence 5889999999842 2 3788899999999988765332 21 2579999999998999999998874321
Q ss_pred cEEEEeCCccccccCCCcEEEEchhhhhc
Q 010184 98 QICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (516)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~IvV~T~~~l~~ 126 (516)
....+.|.|+..+..
T Consensus 75 --------------~~~~~~v~Tfhs~~~ 89 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGL 89 (673)
T ss_dssp --------------TTTTSEEEEHHHHHH
T ss_pred --------------cccCCEEEeHHHHHH
Confidence 013477999988865
No 155
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0089 Score=60.57 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=31.0
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.++..+|.+|+|+|||+.+-+++...+.+++.+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 457889999999999999999999998888877654
No 156
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.55 E-value=0.078 Score=52.65 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=25.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC--CEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~--~~Lvl~ 75 (516)
+..+|.+|+|+|||.++-.++..+.. +++.+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 57899999999999999998877763 555544
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.47 E-value=0.021 Score=55.48 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++...+.+..++..+...+.++.+|.|+|||..+-.++..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 44555556655555544468999999999999988887664
No 158
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.0078 Score=61.46 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.8
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
.+++.+|.+|+|+|||+.+-+++...+.+++.+..+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 4578899999999999999999999998888877543
No 159
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.41 E-value=0.042 Score=57.65 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHHhC-----------------CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 26 PRPYQEKSLSKMFGN-----------------GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~-----------------~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
-++.+.+.+..++.. +..+..+|.+|+|+|||.++-.++...+.+++.+-.+
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 355666666666543 1235789999999999999999998887777666543
No 160
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.38 E-value=0.017 Score=55.85 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=28.6
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
++..+|.+|+|+|||.++-+++..++.+++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSA 69 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH
Confidence 3466788999999999999999988888877764
No 161
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.36 E-value=0.044 Score=54.54 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHHh----CCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEE
Q 010184 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLA 75 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~ 75 (516)
.+--|+.+.+.+..++. .+.++..+|.+|.|+|||..+-.++... +.+++++-
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 34457778777776665 3344678999999999999988777655 44555554
No 162
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.34 E-value=0.028 Score=58.53 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=27.9
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
..++.+|.+|+|+|||.++-+++...+.+++.+-
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 3457899999999999999998888877766654
No 163
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.27 E-value=0.078 Score=52.65 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 26 PRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-++...+.+..++..++ ++..+|.+|.|+|||..+-.++....
T Consensus 20 g~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 20 GQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp SCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35666667776666553 23468999999999999988876654
No 164
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.27 E-value=0.017 Score=56.33 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=24.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
.+.+|.+|+|+|||.++-.+.... ..+++.+-
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 588999999999999988877644 35665554
No 165
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.23 E-value=0.056 Score=60.46 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.0
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++...+.+..++..+..++.+|++|+|+|||.++-.++..+
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34444444445555555689999999999999988877654
No 166
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.98 E-value=0.17 Score=45.47 Aligned_cols=126 Identities=13% Similarity=0.005 Sum_probs=66.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
...++..+.|.|||-+|+..+.+ .+.+|+|+--.+.-...=...+.+-++ +.....+. .+. ..+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~-----v~~~~~g~--gf~------~~~ 95 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG-----VEFQVMAT--GFT------WET 95 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT-----CEEEECCT--TCC------CCG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC-----cEEEEccc--ccc------cCC
Confidence 37788899999999999987643 468999995444210101112222111 22222221 111 111
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccC------ccCCchhHHHHHhhcccceEEEEeccCC
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV------HVVPAHMFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa------H~~~~~~~~~~l~~~~~~~~l~LTATp~ 182 (516)
.+.-..............+.+...++++||+||. ..+..+....++..-+...-+.+|+--.
T Consensus 96 ~~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 96 QNREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp GGHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 1100000000111244455566678999999999 4455555555666555566788887654
No 167
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.98 E-value=0.015 Score=59.30 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=30.9
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.+++.++.+|+|+|||+.+-+++...+.+++.+..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 456789999999999999999999998888877654
No 168
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.83 E-value=0.21 Score=49.11 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+...+.+..++..++..+.++.+|.|+|||.++-.++..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 3444555566666643348999999999999998887664
No 169
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.75 E-value=0.018 Score=55.53 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.1
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.+..+|.+|+|+|||.++-.++...+.+++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 4578999999999999999888877766655443
No 170
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.59 E-value=0.16 Score=50.12 Aligned_cols=40 Identities=15% Similarity=0.054 Sum_probs=27.1
Q ss_pred HHHHHHHHHHH-hCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 28 PYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 28 ~yQ~~al~~~~-~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+...+.+..++ ..++....+|.+|.|+|||..+-.++..+
T Consensus 20 ~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 20 EELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp HHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34444555555 44433348899999999999988777643
No 171
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.54 E-value=0.046 Score=60.26 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++.+.+.+..++......+.+|.+|+|+|||.++-.++..+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 44555555556665555688999999999999988777543
No 172
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.48 E-value=0.014 Score=53.06 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=17.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (516)
-.++.+++|+|||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999998876533
No 173
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.44 E-value=0.053 Score=52.44 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
..+|.+|+|+|||.++-.++... ..+++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 67999999999999998877665 24455553
No 174
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.44 E-value=0.06 Score=49.05 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=36.8
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChh-hHHHHHH
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV-SVDQWAF 86 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~-L~~Qw~~ 86 (516)
.++..++.++ .+.-.+|.+|+|+|||..+..++...+.+++++..... -..+|.+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~ 64 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQ 64 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHH
Confidence 3566776532 23456889999999999888877655678888875431 2344544
No 175
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.28 E-value=0.074 Score=54.99 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.2
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+++.+|.+|+|+|||..+-+++...+.+++.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 356889999999999999988887777766554
No 176
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.08 E-value=0.077 Score=58.15 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=54.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh----cC---CCEEEEEeChhhHHHHHHHHHHhhCCC--
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK---KSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~---~~~Lvl~P~~~L~~Qw~~e~~~~~~~~-- 95 (516)
.|.|.|.+++.. .. +..+|.++.|||||.+...-+.. .+ .++|+|+.|+..+.+.++.+.+.++..
T Consensus 11 ~Ln~~Q~~av~~--~~---g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TE---GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TSCHHHHHHHHC--CS---SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hCCHHHHHHHhC--CC---CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 589999999984 12 37899999999999887654322 12 579999999998999988888765432
Q ss_pred CCcEEEEe
Q 010184 96 DDQICRFT 103 (516)
Q Consensus 96 ~~~v~~~~ 103 (516)
...|..|+
T Consensus 86 ~~~v~Tfh 93 (724)
T 1pjr_A 86 DVWISTFH 93 (724)
T ss_dssp TSEEEEHH
T ss_pred CcEEeeHH
Confidence 23444444
No 177
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=93.77 E-value=0.15 Score=47.28 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=37.5
Q ss_pred HHHHHhCC--CCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhhHHHHHHHHHH
Q 010184 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
++.++.++ .+...+|.+|+|+|||..++.++. ..+.+++++..... ..+..+.+..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHH
Confidence 45555442 224668899999999999877654 34678888886543 5666655553
No 178
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.34 E-value=0.11 Score=57.02 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.++..+|.+|+|+|||+.+-+++..++.+++.|-
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~ 270 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence 3567899999999999999999988887766654
No 179
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.25 E-value=0.3 Score=45.02 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.3
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh--c-------CCCEEEEEeCh
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNA 78 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~--~-------~~~~Lvl~P~~ 78 (516)
.+..++.++ .+.-..|.+|.|+|||..+..++.. . ..+++++....
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 466677543 2346788999999999998887763 2 35677776543
No 180
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=92.87 E-value=0.13 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.013 Sum_probs=18.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
...+|.+|+|+|||..+-+++..
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999887766643
No 181
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.81 E-value=0.25 Score=49.60 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=31.4
Q ss_pred CCCCHHHHHHHHHHH-h----C--CCCcccEE--EecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMF-G----N--GRARSGII--VLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~-~----~--~~~~~~il--~~~tG~GKTl~~i~~i~~~ 67 (516)
+-=|+.+.+.+..++ . + ...+..+| .+|.|+|||..+-.++...
T Consensus 24 l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 24 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 445778888887776 3 2 23346677 7999999999888777544
No 182
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.74 E-value=0.48 Score=50.60 Aligned_cols=32 Identities=22% Similarity=0.326 Sum_probs=24.5
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+...+..+ ...+|.+|+|+|||..+-.++...
T Consensus 53 l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 53 IKTAANQK--RHVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp HHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTS
T ss_pred ccccccCC--CEEEEEeCCCCCHHHHHHHHhccC
Confidence 33444444 488999999999999998887655
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=92.57 E-value=0.45 Score=47.37 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=37.3
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHH
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW 84 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw 84 (516)
..+..++. ++ ++.-.+|.+|+|+|||..++.++.. .+++++++..... ..++
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s-~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC-hhHH
Confidence 45777776 33 3346788899999999999887644 3578999887654 4444
No 184
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.56 E-value=0.16 Score=55.90 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=24.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
+.++.+|+|+|||.++-.++...+.+++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 579999999999999998887776655544
No 185
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.42 E-value=0.06 Score=59.33 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=19.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.++.+|+|+|||.++-+++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999998877654
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.39 E-value=0.11 Score=56.97 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
..++.++.+|+|+|||+.+-+++...+.+++.+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 3467899999999999999999999888777654
No 187
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.26 E-value=0.56 Score=46.34 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=35.7
Q ss_pred HHHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
...+..++. ++ ++.-.+|.+|.|+|||..++.++.. .+++++++.....
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 346777887 43 3346788899999999998887643 3578998886544
No 188
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=92.05 E-value=0.68 Score=45.87 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=35.2
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
..+..++. ++ +++-.+|.+++|+|||..++.++.. .+.+++++.....
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 45777776 33 3346788899999999999887643 3578999887544
No 189
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=91.58 E-value=0.8 Score=44.46 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=58.5
Q ss_pred HHHHHHHh----CCCC-cccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 32 KSLSKMFG----NGRA-RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 32 ~al~~~~~----~~~~-~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
..++.++. ++-. +...|.+|+|+|||..++.++... +++++++.+...+... ..++ ++++..+
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~-lGvd~d~--- 84 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRS-MGVDPER--- 84 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHH-TTCCGGG---
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHH-hCCCHHH---
Confidence 45777787 5421 245778999999999988776432 5789999877664332 1333 3443322
Q ss_pred EeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHH---HccCCccEEEEccCccCC
Q 010184 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE---IRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 102 ~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~---l~~~~~~~vIlDEaH~~~ 158 (516)
+++..+..+-.. .....+. +....+++||+|=+..+.
T Consensus 85 --------------llv~~~~~~E~~------~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 85 --------------VIHTPVQSLEQL------RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------------EEEEECSBHHHH------HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------------eEEEcCCCHHHH------HHHHHHHHHHhhccCceEEEEecccccc
Confidence 344433322110 0111222 355678999999887763
No 190
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.31 E-value=0.15 Score=56.93 Aligned_cols=28 Identities=18% Similarity=0.508 Sum_probs=22.4
Q ss_pred cCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 143 NREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 143 ~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
...+++++|||++.+....+..++..+.
T Consensus 658 ~~~~~vl~lDEi~~l~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 658 RRPYSVILFDEIEKAHPDVFNILLQILD 685 (854)
T ss_dssp HCSSEEEEESSGGGSCHHHHHHHHHHHT
T ss_pred hCCCeEEEEecccccCHHHHHHHHHHhc
Confidence 3567899999999998887777777664
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.24 E-value=0.78 Score=45.14 Aligned_cols=48 Identities=13% Similarity=0.170 Sum_probs=34.3
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---------cCCCEEEEEeChh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---------IKKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---------~~~~~Lvl~P~~~ 79 (516)
..+..+++++ .+.-.+|.+|+|+|||..++.++.. .+++++++.....
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 3466677543 2335688899999999999988765 2467888886553
No 192
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=91.22 E-value=0.91 Score=44.91 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=36.2
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhh
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVS 80 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L 80 (516)
..++.++. ++ ++.-.+|.+|+|+|||..++.++.. .+++++++.+...+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 56888887 43 2345678899999999998887754 45789998876543
No 193
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=91.21 E-value=0.31 Score=56.14 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=61.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcc---c--------------
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK---E-------------- 108 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~---~-------------- 108 (516)
..+.+-+|+|||++...++....+++|||+|+...+.||+++|..|+ +..|..|-+... +
T Consensus 20 ~~l~G~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~el~~f~---~~~V~~fP~~~~~~y~~~~p~~~i~~~Rl~ 96 (1151)
T 2eyq_A 20 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYDSFSPHQDIISSRLS 96 (1151)
T ss_dssp CCBCCCCTTHHHHHHHHHHHSSSSEEEEEESSHHHHHHHHHHHGGGC---SSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHHHhhCCCEEEEeCCHHHHHHHHHHHHhhc---CCcEEEecccccCcccccCCChHHHHHHHH
Confidence 57788999999999988887778899999999999999999999985 335666544311 0
Q ss_pred ---cc-cCCCcEEEEchhhhhcc
Q 010184 109 ---RF-RGNAGVVVTTYNMVAFG 127 (516)
Q Consensus 109 ---~~-~~~~~IvV~T~~~l~~~ 127 (516)
.+ .+..+|+|+|...+...
T Consensus 97 ~L~~L~~~~~~viV~~~~al~~~ 119 (1151)
T 2eyq_A 97 TLYQLPTMQRGVLIVPVNTLMQR 119 (1151)
T ss_dssp HHHHGGGCCSEEEEEEHHHHTBB
T ss_pred HHHHHHhCCCCEEEEeHHHHhcc
Confidence 01 23468999998877665
No 194
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.05 E-value=1.1 Score=45.63 Aligned_cols=32 Identities=19% Similarity=-0.040 Sum_probs=23.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
...++++++|+|||.++..++.. .+++++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34577799999999987766533 356777766
No 195
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.94 E-value=0.44 Score=48.92 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=37.0
Q ss_pred HHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHH
Q 010184 33 SLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 33 al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
.+..++.+ .++.-.+|++++|+|||..++.++.. .+.+++++...-. ..|+...+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 46666632 22346688899999999988876643 2458999886543 55655554
No 196
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.32 E-value=3.1 Score=42.30 Aligned_cols=32 Identities=16% Similarity=-0.028 Sum_probs=24.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
...++++++|+|||.++..++.. .++++++++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 45678899999999988776643 356777776
No 197
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.18 E-value=0.43 Score=45.68 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.0
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
+.+.+|.+|+|+|||.++-.++...+.+++.+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4578999999999999999888887777666543
No 198
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.09 E-value=0.54 Score=44.44 Aligned_cols=35 Identities=14% Similarity=0.088 Sum_probs=25.7
Q ss_pred HHHHHHHhCC-CCc-ccEEEecCCCcHHHHHHHHHHh
Q 010184 32 KSLSKMFGNG-RAR-SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 32 ~al~~~~~~~-~~~-~~il~~~tG~GKTl~~i~~i~~ 66 (516)
.++..|+.+. ..+ ..+|.+|+|+|||+.+.+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 4466667664 323 4678899999999999988764
No 199
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.72 E-value=0.41 Score=55.64 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=48.8
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH-Hhc--------CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA-CRI--------KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i-~~~--------~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..++.+-|.+++..- + ++.++.+..|||||.+.+.-+ ..+ ..++|+|++|+..+...++.+...
T Consensus 8 ~~~~t~eQ~~~i~~~--~---~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--G---QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp --CCCHHHHHHHHCC--S---SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--C---CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 368999999999852 2 488999999999999876533 221 147999999999899888887764
No 200
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.68 E-value=0.82 Score=55.01 Aligned_cols=48 Identities=25% Similarity=0.339 Sum_probs=36.5
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChh
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~ 79 (516)
..+..++. .+ +++..+|.+|+|+|||..+..++. ..+.+++++.....
T Consensus 1413 ~~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1413 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 34778887 43 456889999999999999987763 34678888887654
No 201
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.93 E-value=0.35 Score=47.94 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=28.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
.+.+|.+|+|+|||.++-+++...+.+++.+-.+
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 5789999999999999999998888887776543
No 202
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=88.61 E-value=0.58 Score=41.83 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
++.+|.+|+|+|||..+..++... +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 578999999999999887776544 45666553
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.08 E-value=0.3 Score=44.31 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCCCc-ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 31 EKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 31 ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
...+..++.+-..+ ..++.+|+|+|||..+.+++..+.++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 45566666653223 46778999999999999888776554
No 204
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.02 E-value=0.68 Score=42.10 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=31.1
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeCh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (516)
..+..++.++ .+.-..|.+|.|+|||..+..++... ...++++....
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4566666542 23467888999999999887776432 34477776543
No 205
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.78 E-value=0.42 Score=44.69 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=25.8
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
.++.+|.+|+|+|||..+-+++...+.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 34678999999999999988887777666544
No 206
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.74 E-value=5.1 Score=36.69 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=22.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
+.++.++.|.|||..++..+.. .+.+++++.
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 5677899999999998877643 355665444
No 207
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=87.48 E-value=2.1 Score=43.00 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=31.2
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeCh
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (516)
.+..++.++ .+.-..|.+|.|+|||..+..++... ..+++++....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 466666543 33467889999999999988655321 24588887554
No 208
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=87.41 E-value=1.1 Score=43.74 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=38.8
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhh-HHHHHHHHHH
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVS-VDQWAFQFKL 90 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L-~~Qw~~e~~~ 90 (516)
..+..+++++ .+.-.+|.+|+|+|||..++.++... +++++++.....+ ..+..+.+..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4566666543 23466889999999999999887653 4678888865432 3444433333
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=87.15 E-value=0.31 Score=53.90 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.3
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
++..+|.+|+|+|||.++-+++...+.+++.+
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v 269 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLI 269 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEE
Confidence 45788999999999999988887776655444
No 210
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=87.05 E-value=0.31 Score=47.78 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.-.+|++|||+|||-+++.++..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3578899999999999999998775
No 211
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=86.37 E-value=0.52 Score=41.43 Aligned_cols=29 Identities=28% Similarity=0.225 Sum_probs=24.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
+..+|.+++|+|||.++-.++..++.+++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i 34 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILY 34 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36789999999999999999888775543
No 212
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.28 E-value=0.46 Score=44.64 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=25.4
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
.++.+|.+|+|+|||.++-+++...+.+++.+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v 75 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSM 75 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEe
Confidence 35688999999999999998887776655443
No 213
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=86.10 E-value=0.73 Score=40.12 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=25.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
..+|.+++|+|||.++-.++..++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 568889999999999999998887666544
No 214
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.08 E-value=2.2 Score=46.85 Aligned_cols=76 Identities=12% Similarity=0.207 Sum_probs=61.3
Q ss_pred CCCeEEEEeccHHHHHHHHHHh---------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC-CCcccccccccCEE
Q 010184 267 RGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-VGDNSIDIPEANVI 336 (516)
Q Consensus 267 ~~~k~iVF~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~-~~~~GlDlp~a~~v 336 (516)
.|.+++|.+++..-+...++.+ ++..++|+++..+|...++.+.++ ..+|+|+|. .+...+++..+++|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhhhhhccCCceE
Confidence 4779999999988776666544 245689999999999999999997 899999995 44556788899999
Q ss_pred EEecCCC
Q 010184 337 IQISSHA 343 (516)
Q Consensus 337 I~~~~~~ 343 (516)
|+...|.
T Consensus 495 VIDEaHr 501 (780)
T 1gm5_A 495 IIDEQHR 501 (780)
T ss_dssp EEESCCC
T ss_pred Eecccch
Confidence 9876653
No 215
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=85.31 E-value=0.72 Score=40.86 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=32.1
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+|.++.|||||..+..++.. +.+++++++....-..|.+.+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 368899999999999988877 779999998765555566666654
No 216
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.07 E-value=0.56 Score=45.36 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=21.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.-.+|++|||+|||-.+..++...+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3567899999999999999988765
No 217
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.79 E-value=0.99 Score=43.87 Aligned_cols=32 Identities=13% Similarity=-0.043 Sum_probs=27.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
++.+|.+|+|+|||..+-.++...+.++..+.
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999988888887766554
No 218
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.48 E-value=1.2 Score=45.58 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.1
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P 76 (516)
+++.++.+|+|+|||..+-+++..++ .+++.+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 35789999999999999999988877 45555443
No 219
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=84.42 E-value=0.61 Score=45.15 Aligned_cols=33 Identities=21% Similarity=0.105 Sum_probs=24.7
Q ss_pred CcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~ 75 (516)
..+.+|.+|+|+|||..+.+++. ..+.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 35889999999999998877664 3345666654
No 220
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=83.75 E-value=1 Score=46.35 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++...+.+..++......+.+|.+|+|+|||.++-.++..+
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 44555555556655545688999999999999998887664
No 221
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=83.55 E-value=1.6 Score=40.03 Aligned_cols=56 Identities=7% Similarity=0.149 Sum_probs=37.8
Q ss_pred HHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHH
Q 010184 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
++.++.+| .+.-.+|++++|+|||..++.++.+ .+++++++...-. ..+..+.+..
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHH
Confidence 44555543 2346788999999999988876533 3578888876543 6666666554
No 222
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=83.26 E-value=0.89 Score=40.61 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
...+|.+++|+|||.++-.++..++.++
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 4778999999999999999888876554
No 223
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=83.24 E-value=0.78 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=21.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
-.+|.+|+|+|||..+..++...+..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 35789999999999999988877643
No 224
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=82.54 E-value=1.1 Score=45.58 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.8
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.++.++.+|+|+|||..+-.++..++.+++.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3578999999999999999999888888776653
No 225
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.53 E-value=3.1 Score=49.46 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=64.0
Q ss_pred HHHHHHHhC-C--CCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCC
Q 010184 32 KSLSKMFGN-G--RARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (516)
Q Consensus 32 ~al~~~~~~-~--~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~ 105 (516)
.++..++.. + +++...|.+|.|+|||..++.++ ++.++.|+++.+--+|-..+ .+++ +++-..
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~-Gv~~~~------- 1485 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKL-GVDIDN------- 1485 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHT-TCCGGG-------
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHc-CCCHHH-------
Confidence 456677774 3 33456788999999999998876 44578999999988766655 3443 554322
Q ss_pred ccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 106 ~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
++|+-|+.--.. .+..-..++...+++||+|.+-.+.
T Consensus 1486 ----------l~~~~p~~~e~~------l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1486 ----------LLCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ----------CEEECCSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ----------eEEeCCCcHHHH------HHHHHHHHHcCCCCEEEEccHHhCC
Confidence 445444322110 1222333455788999999987664
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=82.37 E-value=0.72 Score=44.68 Aligned_cols=24 Identities=33% Similarity=0.318 Sum_probs=20.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+|++|||+|||-++..++...+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc
Confidence 467889999999999999987764
No 227
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.95 E-value=2.1 Score=43.34 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+.+-+...+..++.. .....+|.+|||+|||.+.-+++..+
T Consensus 150 g~~~~~~~~L~~l~~~-~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3556677788877642 22356788999999998776666444
No 228
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.64 E-value=1.3 Score=41.14 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
++.+|.+|+|+|||..+-+++...+.+.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 35789999999999999888877766655553
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=81.58 E-value=2.3 Score=41.09 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=38.8
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------------C----CCEEEEEeChhh-HHHHHHHHH
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------------K----KSCLCLATNAVS-VDQWAFQFK 89 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------------~----~~~Lvl~P~~~L-~~Qw~~e~~ 89 (516)
..+..+++++ .+.-.+|.+|+|+|||..++.++... + ++++++.....+ ..+..+.+.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4566777543 23456889999999999998877542 2 578888865532 444444444
Q ss_pred H
Q 010184 90 L 90 (516)
Q Consensus 90 ~ 90 (516)
+
T Consensus 165 ~ 165 (322)
T 2i1q_A 165 H 165 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 230
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=81.11 E-value=3.3 Score=49.21 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=55.0
Q ss_pred HHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcc
Q 010184 34 LSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK 107 (516)
Q Consensus 34 l~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~ 107 (516)
++.++. .+ ++...+|.+|+|+|||..++.++.. .+.+++++.-.-. ..|.. .+.++++..+
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees-~~ql~---A~~lGvd~~~--------- 786 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY---ARKLGVDIDN--------- 786 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC-CCHHH---HHHTTCCGGG---------
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch-HHHHH---HHHcCCChhh---------
Confidence 455554 22 3346788899999999999887644 3568888875443 44432 3333443222
Q ss_pred ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCC
Q 010184 108 ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (516)
Q Consensus 108 ~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~ 158 (516)
+++.....+... ............+++||||+...+.
T Consensus 787 --------L~i~~~~~leei------~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 787 --------LLCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp --------CEEECCSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred --------eEEecCCcHHHH------HHHHHHHHHccCCCEEEEechhhhc
Confidence 223222222110 0111112224678999999999886
No 231
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=81.08 E-value=0.87 Score=44.33 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+|++|||+|||.++..++...+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578899999999999999988776
No 232
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=81.04 E-value=3.5 Score=39.81 Aligned_cols=58 Identities=12% Similarity=0.026 Sum_probs=38.9
Q ss_pred HHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHH
Q 010184 32 KSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 32 ~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..+..++.+ .++.-.+|++++|+|||..++.++.. .+.+++++..-- -..|....+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHH
Confidence 456666632 22345788899999999988877643 246888888653 36666655543
No 233
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=80.64 E-value=1.7 Score=41.08 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=23.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
++.+|.+|.|+|||..+-+++...+...+.+
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 4578999999999999888877666544443
No 234
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=80.44 E-value=2.1 Score=42.40 Aligned_cols=92 Identities=16% Similarity=0.129 Sum_probs=51.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhhHHH-HHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQ-WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Q-w~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
...++.+++|+||+.++-.+-.... .+ +|.+.-.++-.+ +..++ |+.. -+.|+|....+
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~-fv~vnc~~~~~~~~~~~l---fg~~---~g~~tga~~~~----------- 214 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGA-FVDLNCASIPQELAESEL---FGHE---KGAFTGALTRK----------- 214 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSC-EEEEESSSSCTTTHHHHH---HEEC---SCSSSSCCCCE-----------
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCC-cEEEEcccCChHHHHHHh---cCcc---ccccCCccccc-----------
Confidence 4788999999999998876554332 34 555544443332 22222 2211 11223322110
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
.+.+ . ...-|.+++||+|.++.....+++..+.
T Consensus 215 ~g~~--------------~---~a~~gtlfldei~~l~~~~Q~~Ll~~l~ 247 (368)
T 3dzd_A 215 KGKL--------------E---LADQGTLFLDEVGELDQRVQAKLLRVLE 247 (368)
T ss_dssp ECHH--------------H---HTTTSEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CChH--------------h---hcCCCeEEecChhhCCHHHHHHHHHHHH
Confidence 0111 1 1334799999999999887777776664
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=80.34 E-value=1.2 Score=38.23 Aligned_cols=26 Identities=23% Similarity=0.023 Sum_probs=21.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++...+.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 45789999999999999888777644
No 236
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=80.13 E-value=1.4 Score=38.53 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
...+|.+++|+|||.++-.++...+.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 4678999999999999998887776443
No 237
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=79.61 E-value=1.3 Score=38.08 Aligned_cols=27 Identities=19% Similarity=0.009 Sum_probs=21.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
-.+|.+++|+|||.++-.+ ...+.+++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i 29 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVI 29 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEE
Confidence 4578899999999999888 66665533
No 238
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.26 E-value=1.1 Score=40.38 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=20.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+..+|.+|||+|||-+++.++.+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3568899999999999999886643
No 239
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=79.12 E-value=3.8 Score=41.69 Aligned_cols=57 Identities=18% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHH
Q 010184 32 KSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 32 ~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
..+..++++ .++.-.+|++++|+|||..++.++.. .+.+++++..--. ..|+...+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~-~~~l~~R~~ 249 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP-AAQLTLRMM 249 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC-HHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC-HHHHHHHHH
Confidence 346777732 12345688899999999988876643 2568999886543 666665543
No 240
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.95 E-value=1.8 Score=40.92 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
++.+|.+|+|+|||..+-+++.....+.+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 35789999999999999888877776665554
No 241
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=78.87 E-value=1.4 Score=37.92 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=23.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
..+|.+++|+|||.++-.++..++-+++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 6788999999999999999888776543
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=78.86 E-value=3.4 Score=37.18 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=34.7
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHH
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
+++.++.++ .+...+|.+|+|+|||..+..++.. .+++++++..... ..+....+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHH
Confidence 455555422 2346788899999999887766533 3578888775432 444444443
No 243
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=78.23 E-value=1.7 Score=37.91 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++..++-+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 56889999999999999888877754
No 244
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=78.05 E-value=5 Score=48.41 Aligned_cols=48 Identities=23% Similarity=0.315 Sum_probs=35.1
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChh
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (516)
..+..++. ++ ++.-.+|.+|+|+|||..++.++... +.+++++..--.
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s 422 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 422 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC
Confidence 45777776 32 33567888999999999998877543 468888876554
No 245
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=77.95 E-value=7 Score=37.36 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=23.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P 76 (516)
..+++++.|+|||.++..++.. .+++++++.-
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3466799999999887766533 3667777763
No 246
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=77.78 E-value=4.9 Score=39.27 Aligned_cols=56 Identities=13% Similarity=0.092 Sum_probs=38.6
Q ss_pred HHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHH
Q 010184 32 KSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 32 ~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..+..++.+ .++.-.+|++++|+|||..++.++.. .+.+++++..--. ..|....+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms-~~ql~~Rl 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMS-AEQLALRA 93 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSC-HHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC-HHHHHHHH
Confidence 456666653 22345788899999999988877644 4678999886543 66655554
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=77.74 E-value=1.3 Score=43.48 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+|++|||+|||.++..++...+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 567899999999999999988776
No 248
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=77.64 E-value=2 Score=37.71 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=22.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
...+|.+|+|+|||.++-.++.......+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i 40 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHF 40 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEE
Confidence 4678899999999999887776544444433
No 249
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=77.54 E-value=1.8 Score=38.01 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=22.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
...+|.+++|+|||.++-.++..++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 356788999999999998888777644
No 250
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.53 E-value=3.6 Score=42.73 Aligned_cols=40 Identities=18% Similarity=-0.044 Sum_probs=27.2
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.+.+.+.+...+..+ ...+|++|||||||.+.-+++..+
T Consensus 245 ~~~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp SCHHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 3344455555555554 378999999999998876666544
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=77.52 E-value=1.6 Score=37.84 Aligned_cols=26 Identities=19% Similarity=0.164 Sum_probs=22.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++..++-+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 57889999999999999888877643
No 252
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=77.38 E-value=11 Score=38.02 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=22.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
..+++++.|+|||.++..++.. .+++++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 4567799999999887776643 356777766
No 253
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=77.28 E-value=2.6 Score=46.22 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
++...+.+..++......+.+|.+|+|+|||.++-.++..+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45555555556655555689999999999999998887664
No 254
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=77.24 E-value=1.5 Score=38.49 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
...+|.+++|+|||.++-.++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999888877
No 255
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=76.99 E-value=0.91 Score=44.15 Aligned_cols=32 Identities=9% Similarity=-0.065 Sum_probs=25.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
..+|.+|+|+|||..+..++...+.+++++.-
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45889999999999999888665566666654
No 256
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=76.86 E-value=2.7 Score=41.96 Aligned_cols=93 Identities=15% Similarity=0.102 Sum_probs=51.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC---CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T 120 (516)
...+|.+++|+|||.++-.+-.... ++++. +...++..+..+ ...++.... .|+|.... .
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~-v~~~~~~~~~~~--~elfg~~~g---~~tga~~~-----------~ 223 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVA-LNVASIPRDIFE--AELFGYEKG---AFTGAVSS-----------K 223 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEE-EETTTSCHHHHH--HHHHCBCTT---SSTTCCSC-----------B
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEE-EecCCCCHHHHH--HHhcCCCCC---CCCCcccc-----------c
Confidence 4679999999999998765543332 45544 444444443221 123333211 12222111 0
Q ss_pred hhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc
Q 010184 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (516)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~ 170 (516)
.+.+ . ..+-|.+++||++.++.....++++.+.
T Consensus 224 ~g~~--------------~---~a~~gtlfldei~~l~~~~q~~Ll~~l~ 256 (387)
T 1ny5_A 224 EGFF--------------E---LADGGTLFLDEIGELSLEAQAKLLRVIE 256 (387)
T ss_dssp CCHH--------------H---HTTTSEEEEESGGGCCHHHHHHHHHHHH
T ss_pred CCce--------------e---eCCCcEEEEcChhhCCHHHHHHHHHHHh
Confidence 1111 1 1344899999999999887776766554
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=76.58 E-value=2.1 Score=36.88 Aligned_cols=26 Identities=38% Similarity=0.522 Sum_probs=21.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+|+|+|||.++-.++...+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788999999999999888777653
No 258
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.21 E-value=1.6 Score=39.60 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=22.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
...+|.+++|+|||.++-.++...+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCce
Confidence 356888999999999999888877643
No 259
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=76.18 E-value=1.9 Score=39.22 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+++|+|||.++-.++...+.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36788999999999999888877764
No 260
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=76.14 E-value=1.9 Score=37.88 Aligned_cols=27 Identities=15% Similarity=0.014 Sum_probs=22.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
...+|.+++|+|||.++-.++...+.+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 367888999999999999888777643
No 261
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=76.11 E-value=3.3 Score=42.21 Aligned_cols=57 Identities=12% Similarity=0.025 Sum_probs=37.9
Q ss_pred HHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHH
Q 010184 32 KSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 32 ~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
..+..++++ .++.-.+|++++|.|||..++.++... +.+++++..--. ..|+...+.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEms-~~ql~~R~~ 245 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEMG-KKENIKRLI 245 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSSC-TTHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCCC-HHHHHHHHH
Confidence 346667643 123457888999999999988776432 568888875433 555555543
No 262
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=76.08 E-value=2.2 Score=44.25 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=26.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
+..+|.+|+|+|||..+-+++...+.+++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 457999999999999998888877777666543
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=75.76 E-value=2 Score=38.30 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=20.9
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+...+|.+|.|+|||.++-.++...+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 34678889999999999888776663
No 264
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=75.66 E-value=1.9 Score=37.04 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++..++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 56889999999999999888877644
No 265
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=75.48 E-value=1.5 Score=44.08 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=20.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+|++|||+|||-++..++...+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 457899999999999999887765
No 266
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=75.44 E-value=2 Score=38.86 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=21.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+++|+|||.++-.++...+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36788899999999999988887764
No 267
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=75.41 E-value=3.5 Score=40.10 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=22.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
...+|.+|+|+|||..+-.++...+.++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 4789999999999999888887765443
No 268
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=75.02 E-value=2.2 Score=38.40 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=21.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++...+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 35789999999999999888777543
No 269
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=74.50 E-value=5.2 Score=37.52 Aligned_cols=59 Identities=5% Similarity=-0.082 Sum_probs=39.8
Q ss_pred HHHHHHHhCCC--CcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
..+..++.++- +...+|.+++|+|||..++.++ +..+.++++++-.- -..+..+.++.+
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~ 71 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRF 71 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHc
Confidence 45778887752 2344555688888887777665 34467888888644 477777777765
No 270
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=74.49 E-value=3.7 Score=41.55 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=28.8
Q ss_pred cccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD 82 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~ 82 (516)
.+.++.++||+|||...-.++ ...+.+++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 478999999999998753333 334678888888877543
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=74.32 E-value=2.1 Score=37.42 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+|.+++|+|||.++-.++...+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999988887765
No 272
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=74.30 E-value=39 Score=28.54 Aligned_cols=117 Identities=5% Similarity=-0.017 Sum_probs=72.7
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccc
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~Gl 328 (516)
..+-.|+...- ..|.+++|.|.+...++.|-+.| ...+=||-..... . ....|++++.-..
T Consensus 26 ~~aCrL~~ka~-~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~-~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 26 QLVCEIAAERW-RSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------R-GGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------T-TCCSEEEECTTSC---
T ss_pred HHHHHHHHHHH-HcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------C-CCCCEEEeCCCCC---
Confidence 33445555544 57999999999999999999999 1222233211000 0 1456777763211
Q ss_pred cccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHcCCceEE
Q 010184 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408 (516)
Q Consensus 329 Dlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~v 408 (516)
.-+..+++|+++... + .+ .+|-- .++.+|..+......++.|=+.+.+.||....
T Consensus 92 ~~~~~~vLinL~~~~--p-~~---~~~f~-------------------Rvie~v~~d~~~~~~AR~r~k~yr~~G~~l~~ 146 (150)
T 3sxu_A 92 SSSRRDILISLRTSF--A-DF---ATAFT-------------------EVVDFVPYEDSLKQLARERYKAYRVAGFNLNT 146 (150)
T ss_dssp CCSCCSEEEECCSSC--C-GG---GGGCS-------------------EEEEEECSSGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCCEEEECCCCC--C-cc---ccCCC-------------------EEEEEeCCCHHHHHHHHHHHHHHHHCCCCcEE
Confidence 123467999885542 2 11 12222 23458887777778889999999999997765
Q ss_pred E
Q 010184 409 I 409 (516)
Q Consensus 409 i 409 (516)
.
T Consensus 147 ~ 147 (150)
T 3sxu_A 147 A 147 (150)
T ss_dssp E
T ss_pred e
Confidence 4
No 273
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=74.12 E-value=2.3 Score=38.25 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=21.4
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
.+|.+++|+|||.++-.++...+.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~~ 28 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIPH 28 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 57899999999999988887776443
No 274
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=73.95 E-value=2.1 Score=37.48 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=20.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
..+|.+++|+|||.++-.++...+.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5678899999999999888777653
No 275
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=73.86 E-value=3.9 Score=39.56 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+--|+.+.+.+.. +.. +..+|.+|.|.|||...-.++.....+++++.
T Consensus 15 ~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 62 (357)
T 2fna_A 15 FFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLD 62 (357)
T ss_dssp SCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred hcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 4568888888888 665 37889999999999998888877766666664
No 276
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=73.85 E-value=2.5 Score=37.49 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=21.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++...+.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 56788999999999999888877654
No 277
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=73.75 E-value=2.3 Score=37.22 Aligned_cols=25 Identities=12% Similarity=0.050 Sum_probs=21.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+|.+++|+|||.++-.++...+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567889999999999988887766
No 278
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=73.67 E-value=2.4 Score=36.23 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=22.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
..+|.+++|+|||.++-.+...++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 357889999999999998888777543
No 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=73.43 E-value=2.4 Score=40.42 Aligned_cols=31 Identities=10% Similarity=0.096 Sum_probs=23.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
.-.+|++|+|+|||.++-.++.......++|
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~I 64 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 64 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4568889999999999988887765444444
No 280
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=73.35 E-value=2.7 Score=37.36 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+|.+++|+|||.++-.++...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678899999999999988877765
No 281
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=73.13 E-value=4.3 Score=39.84 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=32.9
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeCh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (516)
.++..+++.+ .+.-..|.+|.|+|||..+..++... +++++++....
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3567777653 33456788999999999988877554 24667776543
No 282
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=72.98 E-value=2.5 Score=37.28 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=21.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+|.+++|+|||.++-.++...+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678889999999999988887776
No 283
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=72.96 E-value=2.5 Score=38.72 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+++|+|||.++-.++...+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788899999999999998887763
No 284
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=72.93 E-value=2.4 Score=38.64 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=21.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
+-.+|.+|+|+|||.++-.++.+.+-
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45577899999999999888877753
No 285
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=72.77 E-value=2.3 Score=38.54 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=22.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+++|+|||.++-.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46788999999999999998887763
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=72.63 E-value=2.4 Score=38.28 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=20.4
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
.+|.+|+||||+.++-.++.+.+-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 477899999999999988887753
No 287
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=72.59 E-value=2 Score=37.32 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=20.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
..+|.+++|+|||.++-.++..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5678899999999999998888877755
No 288
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=72.33 E-value=3.1 Score=36.92 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=20.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
|..+|++|.|+|||-+.-.++......
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 467999999999998877766665433
No 289
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=72.22 E-value=8.3 Score=33.93 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=19.2
Q ss_pred ecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 50 LPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 50 ~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
..-|.|||.++..++. ..+++++++=
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4568999999887663 3467787775
No 290
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=71.83 E-value=2.8 Score=37.72 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=21.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+++|+|||.++-.++...+.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 35788999999999999888777543
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=71.76 E-value=3.3 Score=36.10 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=19.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+|.+++|+|||.++-.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999988877654
No 292
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=71.75 E-value=2.1 Score=37.37 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+|.+++|+|||.++-.++..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 568889999999999988887655
No 293
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=71.72 E-value=2.1 Score=39.92 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
...++.+++|+|||.++-.++...+..++++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 45678899999999999888877765444443
No 294
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=71.60 E-value=3.5 Score=38.53 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=23.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl 74 (516)
..++.|++|+|||.++-.++.. .+.+++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 5688899999999999888766 45555544
No 295
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=71.02 E-value=2.7 Score=37.11 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.4
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
.+|.+++|+|||.++-.++..++.+
T Consensus 3 I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 3 IAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEECCCccCHHHHHHHHHHhcCCc
Confidence 5788999999999999888877753
No 296
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=70.64 E-value=3.3 Score=36.62 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=24.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC-CCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK-KSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~-~~~Lvl 74 (516)
...+|.+++|+|||.++-.++...+ .+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 3568889999999999999888773 455543
No 297
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=70.44 E-value=5.9 Score=38.13 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+--|+.+.+.+..++..+ +..+|.+|.|.|||...-.++...+ ++++-
T Consensus 14 ~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~ 61 (350)
T 2qen_A 14 IFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP--GILID 61 (350)
T ss_dssp SCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS--EEEEE
T ss_pred cCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC--cEEEE
Confidence 456888888888887754 4789999999999999888877764 55543
No 298
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=70.27 E-value=3.2 Score=36.78 Aligned_cols=26 Identities=15% Similarity=-0.054 Sum_probs=21.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+++|+|||.++-.++...+.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35678899999999999888877653
No 299
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=70.17 E-value=4 Score=35.36 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=22.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (516)
...+|.+++|+|||.++-.+...+ +.+++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 356788999999999988777654 4455544
No 300
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=69.78 E-value=3.4 Score=38.56 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=23.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
...+|.+++|+|||.++-.++..++-+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 478999999999999998888777643
No 301
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=69.67 E-value=3.8 Score=35.91 Aligned_cols=28 Identities=21% Similarity=-0.046 Sum_probs=21.5
Q ss_pred cEEEecCCCcHHHHHHHHHHhc---CCCEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLC 73 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lv 73 (516)
.+|.++.|+|||.++-.+...+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4678999999999998888766 556543
No 302
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=69.57 E-value=5.5 Score=45.94 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=33.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhh
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
-+|.+..|+|||.+.+.-+..+ +.++|+|||... ..+....+...+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhh
Confidence 3788999999999887644321 368999999884 555566666543
No 303
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=69.47 E-value=2.8 Score=36.13 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=18.2
Q ss_pred ccEEEecCCCcHHHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~ 65 (516)
..+|.+++|+|||.++-.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467889999999999988776
No 304
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=69.40 E-value=3.6 Score=36.00 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=18.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+|.+|+|+|||.++-.++....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 457889999999998877765443
No 305
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=68.95 E-value=2.9 Score=40.61 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=21.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+.+|.+|+|+|||.++-.++....
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4789999999999999988887665
No 306
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=68.60 E-value=3.3 Score=35.73 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=19.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+|.++.|+|||.++-.++...+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3567889999999999877776554
No 307
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.47 E-value=4.9 Score=41.59 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=21.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++.+|.+|+|+|||..+-+++....
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 3899999999999999988887664
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.30 E-value=3.3 Score=37.18 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.-.+|.+|+|+|||.++-.++....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4578889999999999888776653
No 309
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=67.74 E-value=4.6 Score=35.23 Aligned_cols=28 Identities=11% Similarity=-0.191 Sum_probs=21.8
Q ss_pred cEEEecCCCcHHHHHHHHHHhc---CCCEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLC 73 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lv 73 (516)
.+|.+++|+|||.++-.++..+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 4688999999999998888765 445443
No 310
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=67.64 E-value=3.6 Score=36.60 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=19.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+++|||||.++-.++...+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 456779999999999988887655
No 311
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=67.38 E-value=6.9 Score=40.40 Aligned_cols=55 Identities=11% Similarity=-0.066 Sum_probs=37.0
Q ss_pred HHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeChhhHHHHHHHH
Q 010184 33 SLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 33 al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
.+..++++ ..+.-.+|.+++|+|||..++.++... +.+++++..--. ..|....+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 35566642 122356888999999999998877543 458988876543 56666554
No 312
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=67.20 E-value=3.9 Score=36.46 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.-.+|++|+|+|||.++-.++....
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4678889999999999888776653
No 313
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=67.14 E-value=5.1 Score=36.14 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=25.4
Q ss_pred CCCCHH-HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 24 AQPRPY-QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 24 ~~Lr~y-Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
++++.| |..+++.+-.+. ...|.+|.|+|||...-.++
T Consensus 5 i~pk~~g~~~~l~~i~~Ge---~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNT---IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCS---EEEEECCTTSSTTHHHHHHH
T ss_pred cccCCHhHHHHHHhccCCC---EEEEECCCCCCHHHHHHHHh
Confidence 344445 667777764332 67789999999997654433
No 314
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=66.77 E-value=3.8 Score=37.82 Aligned_cols=27 Identities=15% Similarity=0.025 Sum_probs=22.3
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++...+|.+|.|+|||.++-.++...+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 334678899999999999988887765
No 315
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=66.77 E-value=3.9 Score=35.70 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=19.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+-.+|++|+|+|||.+.-.++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367889999999999887776554
No 316
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=66.75 E-value=14 Score=37.31 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=24.0
Q ss_pred cccEEEecCCCcHHHHHHHHHH---hc-CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC---RI-KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~---~~-~~~~Lvl~ 75 (516)
+..+++++.|+|||.++..++. .. +++++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3556779999999998877663 33 67788776
No 317
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=66.67 E-value=6 Score=37.84 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh----cCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~ 75 (516)
+..++++++|+|||.++..++.. .+++++++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678899999999887765532 345777665
No 318
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=66.20 E-value=5.1 Score=35.27 Aligned_cols=23 Identities=26% Similarity=0.023 Sum_probs=19.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
....|.+++|||||.++-.++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35678899999999999888776
No 319
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=66.11 E-value=3.9 Score=37.15 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhcC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+|.+++|+|||.++-.++...+
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57889999999999988887765
No 320
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=66.01 E-value=10 Score=35.55 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=29.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHh--c-----------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR--I-----------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~--~-----------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
.-.+|.+|.|+|||..+..++.. . ..+++++...-. ..+....+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~ 89 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHA 89 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHH
Confidence 46788999999999988776532 2 246777764433 3444444433
No 321
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=65.51 E-value=4.3 Score=36.07 Aligned_cols=24 Identities=13% Similarity=-0.022 Sum_probs=18.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...|.+++|+|||.++-.++. .+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~ 27 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGV 27 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 356889999999999877765 443
No 322
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=63.77 E-value=5.1 Score=35.43 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+++|+|||.++-.++..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 456789999999999998887776
No 323
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=63.65 E-value=4.6 Score=36.41 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+|+|+|||.++-.++...+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999988877665
No 324
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=63.58 E-value=5.6 Score=35.24 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+|.+|+|+|||.++-.++..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 466788999999999887777554
No 325
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=63.49 E-value=6.5 Score=34.22 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=22.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (516)
...++.+++|+|||.++-.++..+ +.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 356788999999999988777554 3455554
No 326
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=63.49 E-value=6.8 Score=40.96 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=25.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
...+|.+|+|+|||..+-.++...+.+...+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 4678999999999999988887776655544
No 327
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=62.94 E-value=7.1 Score=37.51 Aligned_cols=31 Identities=26% Similarity=0.070 Sum_probs=22.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
-.++++|+|+|||.++..++.. .+++++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4568899999999887766533 356777665
No 328
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=62.88 E-value=23 Score=34.99 Aligned_cols=75 Identities=12% Similarity=0.193 Sum_probs=56.7
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh--------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeC-CCc---cccccccc
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL--------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-VGD---NSIDIPEA 333 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L--------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~-~~~---~GlDlp~a 333 (516)
..+.++||.++++.-+..+++.+ ++..++|+.+..++....+.+..+ +.+|+|+|. .+. .-+++...
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECHHHHHHHHHHhccccc
Confidence 46789999999998877776655 234689999998888888888886 789999984 221 12566678
Q ss_pred CEEEEecC
Q 010184 334 NVIIQISS 341 (516)
Q Consensus 334 ~~vI~~~~ 341 (516)
++||+...
T Consensus 141 ~~iViDEa 148 (414)
T 3oiy_A 141 DFVFVDDV 148 (414)
T ss_dssp SEEEESCH
T ss_pred cEEEEeCh
Confidence 88887644
No 329
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=62.64 E-value=5.5 Score=35.25 Aligned_cols=23 Identities=22% Similarity=0.029 Sum_probs=19.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+++|+|||.++-.++. .+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 457899999999999888777 54
No 330
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=62.49 E-value=6.3 Score=35.18 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=23.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
-..|.+++|+|||.++-.++.+++-+++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4567789999999999999999987754
No 331
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=62.46 E-value=8.2 Score=37.41 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=23.5
Q ss_pred cccEEEecCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
.-.+..+..|.|||.++..++ ++.++++++|-
T Consensus 20 ~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 20 KWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 345566788999999888765 34467888875
No 332
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=62.41 E-value=8.1 Score=48.18 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=34.7
Q ss_pred HHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh--hhHHHHHHHHHHh
Q 010184 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA--VSVDQWAFQFKLW 91 (516)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~--~L~~Qw~~e~~~~ 91 (516)
.+..++..+ ++.++++|+|+|||..+-.++.....-.++.++.+ +-..+..+.+...
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~ 1317 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH 1317 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH
Confidence 344555555 48999999999999998666665543333333322 2244455555543
No 333
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=61.33 E-value=7.7 Score=38.52 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=27.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
.+.+|.+|+|+|||...-.++.. .+.+++|+=|..+
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 48899999999999876555433 3567888777765
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=61.32 E-value=7.2 Score=37.74 Aligned_cols=31 Identities=23% Similarity=0.108 Sum_probs=22.6
Q ss_pred ccEEEecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
...++++.|+|||.++..++. ..+++++++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456779999999988776553 3357777775
No 335
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=61.03 E-value=5 Score=35.58 Aligned_cols=25 Identities=20% Similarity=-0.094 Sum_probs=20.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
..+|.+++|+|||.++-.++..++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5678899999999999888876553
No 336
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=60.99 E-value=39 Score=38.61 Aligned_cols=52 Identities=15% Similarity=0.097 Sum_probs=36.1
Q ss_pred CCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhc-------CCCEEEEE
Q 010184 24 AQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLA 75 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~ 75 (516)
+.=|+-..+.+..++.. +..+-..|+++-|.|||..|..++... ...++++.
T Consensus 126 ~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~ 186 (1249)
T 3sfz_A 126 FVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186 (1249)
T ss_dssp CCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE
T ss_pred eccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE
Confidence 55677778888877742 233456788999999999998776441 23466666
No 337
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=60.93 E-value=5.9 Score=35.42 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=20.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+-.+|++|+|+|||.+.-.++....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678899999999998877776543
No 338
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=60.27 E-value=4.7 Score=37.77 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=16.7
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
...+|++|+|+|||...-.++
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~ 46 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMI 46 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHH
Confidence 467889999999998765554
No 339
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=59.78 E-value=9.9 Score=47.41 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=39.8
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
..-+.|.=.+++..+... .....+.+.+|+|+|||.++-.++..++++++++--
T Consensus 624 rlViTPltdr~~~tl~~Al~~~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc 678 (2695)
T 4akg_A 624 RLIYTPLLLIGFATLTDSLHQKYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNC 678 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEET
T ss_pred cceecHHHHHHHHHHHHHHHhCCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEEC
Confidence 345677766666655432 112478999999999999999999999988877753
No 340
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=59.78 E-value=5.9 Score=38.93 Aligned_cols=28 Identities=25% Similarity=0.203 Sum_probs=20.8
Q ss_pred CCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 40 NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 40 ~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+...+.+|.+++|+|||.++-.++..+
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3433457899999999999987766544
No 341
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=59.73 E-value=8.6 Score=37.44 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEe
Q 010184 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (516)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P 76 (516)
+.++.....+-.++.+.-|.|||.++..++.. .++++|+|--
T Consensus 8 ~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 8 QSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp HHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred HHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 34555543345566678899999998876643 4578877764
No 342
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=59.63 E-value=5.6 Score=35.09 Aligned_cols=24 Identities=21% Similarity=0.092 Sum_probs=19.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+|.+|.|+|||.++-.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 356788999999999887776554
No 343
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=59.53 E-value=6.1 Score=34.54 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=18.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-.+|.+|.|+|||.+.-.++...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999998876666443
No 344
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=59.47 E-value=15 Score=37.94 Aligned_cols=33 Identities=15% Similarity=0.004 Sum_probs=25.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P 76 (516)
+..++++++|+|||.++..++.. .+++++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35677899999999988776643 3577888775
No 345
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=59.27 E-value=8.7 Score=37.82 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=25.8
Q ss_pred HHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEE
Q 010184 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (516)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~ 75 (516)
+..+..+ ...+|++|+|+|||...-.++.... ...+.+-
T Consensus 169 ~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 169 RRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 3334444 4889999999999988777765543 3344443
No 346
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=58.28 E-value=7.2 Score=38.38 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=21.3
Q ss_pred HHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH
Q 010184 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.+..+.... ....+|.+|+|+|||...-+++.
T Consensus 114 ~l~~l~~~~-~g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 114 VFKRVSDVP-RGLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp HHHHHHHCS-SEEEEEECSTTSCHHHHHHHHHH
T ss_pred HHHHHHhCC-CCEEEEECCCCCCHHHHHHHHHh
Confidence 455544432 13678889999999987665553
No 347
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=58.20 E-value=9 Score=36.23 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=29.2
Q ss_pred HHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEEeC
Q 010184 33 SLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATN 77 (516)
Q Consensus 33 al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~ 77 (516)
++..+... ..+.-.+|.+|+|+|||..+..++... +.+++++...
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 35555422 223467889999999998877665332 3478777643
No 348
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=58.20 E-value=31 Score=33.80 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=19.8
Q ss_pred ecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 50 LPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 50 ~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
+--|.|||.+++.++. ..++++|+|=
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 4679999999887663 3467888875
No 349
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=57.77 E-value=9.4 Score=34.03 Aligned_cols=24 Identities=17% Similarity=0.130 Sum_probs=19.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+|.+++|+|||.++-.+...+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 466788999999999988776554
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=57.58 E-value=7.2 Score=34.93 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=18.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.++.|||||.++-.+.. .+
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-cC
Confidence 467889999999998877765 44
No 351
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=57.56 E-value=6 Score=35.11 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=18.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
+..+|++|+|+|||.+.-.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46789999999999877665543
No 352
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=57.52 E-value=6.2 Score=34.79 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-..|.+|.|+|||.++-.++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 56788999999998877766543
No 353
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=57.41 E-value=6.4 Score=34.90 Aligned_cols=24 Identities=13% Similarity=-0.129 Sum_probs=19.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+|.++.|+|||.++-.++..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356788999999999998887654
No 354
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=56.84 E-value=8.7 Score=34.32 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...|.+++|+|||.++-.++...+-
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5678899999999999888877763
No 355
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=56.62 E-value=15 Score=34.98 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=21.5
Q ss_pred ccEEEec-CCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 45 SGIIVLP-CGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~-tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
...+..+ .|.|||.++..++ +..++++|+|=
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 3444454 6999999988765 34567888874
No 356
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=56.39 E-value=10 Score=33.62 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=21.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (516)
-..|.++.|+|||.++-.+...+ +.++.++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 45677999999999887666543 4555554
No 357
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=56.37 E-value=8.1 Score=35.22 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=20.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
....|.+++|+|||.++-.++..++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567889999999999988887666
No 358
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=56.30 E-value=7.4 Score=35.77 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=20.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+|+|+|||.++-.++..++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999988887776
No 359
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=55.93 E-value=7.2 Score=34.63 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=19.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...+|.++.|+|||.++-.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367888999999999998887654
No 360
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=55.77 E-value=8.5 Score=37.87 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.5
Q ss_pred ccEEE-ecCCCcHHHHHHH
Q 010184 45 SGIIV-LPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~-~~tG~GKTl~~i~ 62 (516)
.+|++ +.||+|||.+...
T Consensus 106 ~tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 106 GTIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp EEEEEEESTTSSHHHHHTB
T ss_pred EEEEEeCCCCCCccEEeCC
Confidence 34444 8999999998754
No 361
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=55.27 E-value=9 Score=35.42 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...|.+|+|+|||.++-.++..++-
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5678899999999999888877763
No 362
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.12 E-value=13 Score=47.10 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=35.1
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC--hhhHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN--AVSVDQWAFQFK 89 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~--~~L~~Qw~~e~~ 89 (516)
...+..++..+ +..++++|||+|||.....++....+..++.++- .....+....+.
T Consensus 1294 ~~ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e 1352 (3245)
T 3vkg_A 1294 VDVLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFD 1352 (3245)
T ss_dssp HHHHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHh
Confidence 34455666665 4899999999999987766666554433333332 233444555554
No 363
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=55.02 E-value=13 Score=33.73 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=24.7
Q ss_pred cccEEEecCCCcHHHHHHHHH--H--hcCCCEEEEEeCh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA--C--RIKKSCLCLATNA 78 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i--~--~~~~~~Lvl~P~~ 78 (516)
.-..|.+|.|+|||.....++ . .....++++....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 467888999999998776554 2 3456777776543
No 364
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=55.00 E-value=12 Score=36.74 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHhCCCCcccEEEecCCCcHHHHHHHHH---H--hcCCCEEEEEe
Q 010184 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAA---C--RIKKSCLCLAT 76 (516)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~--~~~~~~Lvl~P 76 (516)
..++..+...-.+..+-.|.|||.++..++ + ..++++|+|-.
T Consensus 10 ~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 10 HSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp HHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 445543322344555788999999887654 4 55678888864
No 365
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=54.90 E-value=12 Score=36.59 Aligned_cols=44 Identities=18% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHHHHH---H--hcCCCEEEEEeC
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---C--RIKKSCLCLATN 77 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~--~~~~~~Lvl~P~ 77 (516)
++.++.....+-.++.+.-|.|||.++..++ + ..++++|+|-.-
T Consensus 9 L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 9 LESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp SHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred HHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 4455555433455666788999999887755 3 456788887643
No 366
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=54.86 E-value=6.5 Score=39.82 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=24.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
+..++++++|+|||.++..++... +++++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 356788999999999887766443 46777765
No 367
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=53.81 E-value=12 Score=33.50 Aligned_cols=28 Identities=7% Similarity=-0.061 Sum_probs=20.6
Q ss_pred EecCCCcHHHHHHHHHH---hcCCCEEEEEe
Q 010184 49 VLPCGAGKSLVGVSAAC---RIKKSCLCLAT 76 (516)
Q Consensus 49 ~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P 76 (516)
....|.|||.+++.++. +.+++++++=|
T Consensus 8 s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 8 GTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp ESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 34589999999887663 44678888644
No 368
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=53.05 E-value=17 Score=45.97 Aligned_cols=54 Identities=13% Similarity=0.217 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHH---HhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChh
Q 010184 24 AQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~ 79 (516)
.-+.|-=.++.-.+ +..+ ..|.+.+|.|+|||.++-.++..++++++++..+..
T Consensus 584 LViTPLTdrcy~tl~~Al~~~--~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~ 640 (3245)
T 3vkg_A 584 LVQTPLTDRCYLTLTQALESR--MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEG 640 (3245)
T ss_dssp CCCCHHHHHHHHHHHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred CcCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCC
Confidence 34556555565544 3333 378899999999999999999999999988865443
No 369
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=52.68 E-value=8.5 Score=35.52 Aligned_cols=25 Identities=16% Similarity=-0.057 Sum_probs=20.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...|.+++|+|||.++-.++..++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4678899999999999888776653
No 370
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=52.34 E-value=8.4 Score=35.34 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=20.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+|.+|.|+|||.++-.++...+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678899999999999888776654
No 371
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=52.29 E-value=6 Score=38.02 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=22.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
....|++|.|+|||...-.++....+.+++.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v 158 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFA 158 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTCEEECGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcCceEEEEe
Confidence 46789999999999877666644455664433
No 372
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=52.21 E-value=10 Score=33.61 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=18.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+|.|+|||.++-.++...+
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999988776665443
No 373
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=52.16 E-value=10 Score=33.57 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=18.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...|.+++|+|||.++-.+....
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999999888777654
No 374
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=51.98 E-value=7.2 Score=38.59 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=17.4
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
...+|++|+|+|||.+.-.++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4678899999999987666553
No 375
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=51.87 E-value=10 Score=37.00 Aligned_cols=16 Identities=25% Similarity=0.200 Sum_probs=12.5
Q ss_pred ccEE-EecCCCcHHHHH
Q 010184 45 SGII-VLPCGAGKSLVG 60 (516)
Q Consensus 45 ~~il-~~~tG~GKTl~~ 60 (516)
.+|+ .+.||+|||.+.
T Consensus 96 ~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 96 CTALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred eEEEEecCCCCCCCeEE
Confidence 3444 489999999987
No 376
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=51.77 E-value=13 Score=39.17 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=24.9
Q ss_pred cccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P 76 (516)
+-.++.+..|.|||.++..++ +..++++|+|--
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~ 44 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVST 44 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 456677889999999988765 345778888763
No 377
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=51.76 E-value=9 Score=33.54 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=19.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
+..+|.++.|+|||.+++.++.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46788899999999999998864
No 378
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=51.49 E-value=17 Score=34.21 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=18.1
Q ss_pred cCCCcHHHHHHHHHH---hcCCCEEEE
Q 010184 51 PCGAGKSLVGVSAAC---RIKKSCLCL 74 (516)
Q Consensus 51 ~tG~GKTl~~i~~i~---~~~~~~Lvl 74 (516)
.-|.|||.++..++. ..++++|+|
T Consensus 45 KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 45 KGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 679999999887663 346788775
No 379
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=51.40 E-value=10 Score=34.76 Aligned_cols=26 Identities=19% Similarity=0.071 Sum_probs=21.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
+..|.+++|+|||.++-.++...+-+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 55688999999999999888777644
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=51.28 E-value=14 Score=35.32 Aligned_cols=32 Identities=22% Similarity=0.182 Sum_probs=22.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
....|++|.|+|||.+.-.++.. .++++++..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678899999999876655533 245666654
No 381
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=51.26 E-value=15 Score=32.98 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=20.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (516)
.-..|++|.|+|||...-.++....+.+.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 467899999999998776655443233433
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=51.26 E-value=17 Score=36.07 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=24.7
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (516)
.++..+|.+|.|+|||..+-.++....+.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33467889999999999888777666666555
No 383
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=51.21 E-value=11 Score=37.81 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=12.7
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 159 fAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 159 FAYGQTGSGKTHTMGG 174 (410)
T ss_dssp EEEESTTSSHHHHHHC
T ss_pred EeecCCCCCCCeEeec
Confidence 3348999999998764
No 384
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=51.11 E-value=14 Score=35.70 Aligned_cols=32 Identities=28% Similarity=0.298 Sum_probs=23.8
Q ss_pred ccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P 76 (516)
-.+..+..|.|||.++..++ +..++++|+|-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 34556789999999988765 345788888764
No 385
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=50.70 E-value=17 Score=32.39 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
|.+.++..+...+....+++++.|+|||-....++...
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45555655554444577888999999998887777543
No 386
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=50.70 E-value=10 Score=36.85 Aligned_cols=42 Identities=17% Similarity=0.170 Sum_probs=26.1
Q ss_pred HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEE
Q 010184 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (516)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~ 75 (516)
+.++..+..+ ....|++|+|+|||...-.++.... ...+.+-
T Consensus 162 ~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 162 SAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp HHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred hhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 3344444444 3788999999999987666554432 3344444
No 387
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=50.50 E-value=6.9 Score=33.74 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=15.2
Q ss_pred ccEEEecCCCcHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (516)
-..|.+|.|+|||..+-.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567889999999987765
No 388
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=50.36 E-value=14 Score=35.11 Aligned_cols=31 Identities=23% Similarity=0.131 Sum_probs=22.4
Q ss_pred ccEEEecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
...++++.|+|||.++..++. ..+++++++-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 455679999999988776553 3357777765
No 389
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=49.98 E-value=10 Score=35.81 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=18.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...|.+++|+|||.++-.+. ..+
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC
Confidence 46788999999999987777 444
No 390
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=49.97 E-value=18 Score=33.91 Aligned_cols=30 Identities=27% Similarity=0.273 Sum_probs=20.6
Q ss_pred cEEEec-CCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 46 GIIVLP-CGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 46 ~il~~~-tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
..+..+ .|.|||.++..++ +..++++|+|=
T Consensus 85 I~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 85 IVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp EEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 344444 6999999988765 34567888773
No 391
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=49.90 E-value=22 Score=34.42 Aligned_cols=32 Identities=22% Similarity=-0.015 Sum_probs=21.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
.-..+++|.|+|||.+.-.++.. .++++++..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678899999999876555432 345666654
No 392
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=49.72 E-value=12 Score=36.74 Aligned_cols=18 Identities=28% Similarity=0.362 Sum_probs=13.5
Q ss_pred ccEEE-ecCCCcHHHHHHH
Q 010184 45 SGIIV-LPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~-~~tG~GKTl~~i~ 62 (516)
.+|++ +.||+|||.+...
T Consensus 105 ~tIfAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 105 GTIMCYGQTGAGKTYTMMG 123 (358)
T ss_dssp EEEEEEESTTSSHHHHHTB
T ss_pred eEEEEECCCCCCCceEecc
Confidence 34444 8999999998754
No 393
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=49.56 E-value=12 Score=40.22 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 82 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 82 NDAYRSMRQSQENQCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3667778776655688899999999998765443
No 394
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=49.43 E-value=13 Score=33.90 Aligned_cols=25 Identities=16% Similarity=-0.132 Sum_probs=20.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
..++.++.|+|||.++-.++..+..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4678899999999999888877754
No 395
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=49.42 E-value=12 Score=37.56 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.2
Q ss_pred ccEEE-ecCCCcHHHHHH
Q 010184 45 SGIIV-LPCGAGKSLVGV 61 (516)
Q Consensus 45 ~~il~-~~tG~GKTl~~i 61 (516)
.+|++ +.||+|||.+..
T Consensus 142 ~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 142 VAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp EEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCCceEeC
Confidence 34444 899999999985
No 396
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=49.38 E-value=12 Score=36.63 Aligned_cols=18 Identities=28% Similarity=0.300 Sum_probs=13.3
Q ss_pred ccEE-EecCCCcHHHHHHH
Q 010184 45 SGII-VLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il-~~~tG~GKTl~~i~ 62 (516)
.+|+ .+.||+|||.+...
T Consensus 94 ~tifAYGqTGSGKTyTm~G 112 (354)
T 3gbj_A 94 ACIFAYGQTGSGKSYTMMG 112 (354)
T ss_dssp EEEEEEECTTSSHHHHHTB
T ss_pred eEEEeeCCCCCCCceEEec
Confidence 3444 48999999998753
No 397
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=49.36 E-value=12 Score=36.88 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=12.6
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 106 fAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 106 FAYGQTGTGKTYTMEG 121 (372)
T ss_dssp EEEESTTSSHHHHHTB
T ss_pred EeecCCCCCCCEeEec
Confidence 3348999999998754
No 398
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=49.35 E-value=12 Score=36.19 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=12.7
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 82 fAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 82 FAYGQTSSGKTHTMEG 97 (325)
T ss_dssp EEECSTTSSHHHHHTB
T ss_pred EEECCCCCCCceEecc
Confidence 3348999999999764
No 399
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=49.30 E-value=4.8 Score=44.38 Aligned_cols=30 Identities=20% Similarity=0.345 Sum_probs=23.9
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
.+..+|.+|+|+|||..+-+++...+.+++
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 356889999999999999888877655433
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=49.26 E-value=25 Score=33.51 Aligned_cols=23 Identities=17% Similarity=-0.057 Sum_probs=17.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
.-..|.+|.|+|||.++-.+...
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 34567799999999887766654
No 401
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=49.21 E-value=11 Score=32.40 Aligned_cols=22 Identities=32% Similarity=0.253 Sum_probs=16.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (516)
-.+|++|.|+|||.+.-++...
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999876554433
No 402
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=49.13 E-value=11 Score=36.00 Aligned_cols=31 Identities=29% Similarity=0.112 Sum_probs=21.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
-..+++|+|+|||.+.-.++.. .++++++..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4568899999999876655533 246777664
No 403
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=48.59 E-value=13 Score=36.39 Aligned_cols=16 Identities=13% Similarity=0.115 Sum_probs=12.5
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 82 fAYGqTGSGKTyTM~G 97 (349)
T 1t5c_A 82 FAYGQTASGKTYTMMG 97 (349)
T ss_dssp EEEESTTSSHHHHHTB
T ss_pred eeecCCCCCCCeEEec
Confidence 3348999999998753
No 404
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=48.38 E-value=14 Score=32.86 Aligned_cols=44 Identities=16% Similarity=0.089 Sum_probs=27.9
Q ss_pred HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEE
Q 010184 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (516)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~ 75 (516)
+.+...+...+....+++++.|+|||.....++.... .++.++.
T Consensus 19 ~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 19 EKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML 64 (221)
T ss_dssp HHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence 3344444433345788999999999988777665432 3444444
No 405
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=48.33 E-value=41 Score=38.34 Aligned_cols=90 Identities=11% Similarity=0.127 Sum_probs=63.7
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC--------CceEecCCCHHHHHHHHHHHhcCCCccEEEEe
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t 321 (516)
.+|-.+....+.... ..+.++||.++++.-+..+++.+. +..++|+++..+|...++.+..+ ..+|+|+|
T Consensus 104 SGKTl~~l~~il~~~-~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV~T 181 (1104)
T 4ddu_A 104 VGKTTFGMMTALWLA-RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFS 181 (1104)
T ss_dssp CCHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEEEE
T ss_pred CcHHHHHHHHHHHHH-hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEEEC
Confidence 356443333322222 567899999999999888887773 34689999988888889999987 78999998
Q ss_pred C-CCc---ccccccccCEEEEecC
Q 010184 322 K-VGD---NSIDIPEANVIIQISS 341 (516)
Q Consensus 322 ~-~~~---~GlDlp~a~~vI~~~~ 341 (516)
. .+. .-+++..+++||+...
T Consensus 182 p~rL~~~l~~l~~~~l~~lViDEa 205 (1104)
T 4ddu_A 182 TQFVSKNREKLSQKRFDFVFVDDV 205 (1104)
T ss_dssp HHHHHHSHHHHHTSCCSEEEESCH
T ss_pred HHHHHHHHHhhcccCcCEEEEeCC
Confidence 3 221 1256678888888644
No 406
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=48.06 E-value=25 Score=34.19 Aligned_cols=31 Identities=10% Similarity=0.079 Sum_probs=23.0
Q ss_pred ccEEEecCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
-.+..+.-|.|||.++..++ +..++++|+|-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34555778999999988765 34477888886
No 407
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=48.02 E-value=13 Score=36.39 Aligned_cols=15 Identities=27% Similarity=0.153 Sum_probs=12.0
Q ss_pred EEEecCCCcHHHHHH
Q 010184 47 IIVLPCGAGKSLVGV 61 (516)
Q Consensus 47 il~~~tG~GKTl~~i 61 (516)
+..+.||+|||.+..
T Consensus 94 fAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 94 FAYGQTGAGKTWTMG 108 (350)
T ss_dssp EEECSTTSSHHHHHT
T ss_pred EeecCCCCCCCEEee
Confidence 334899999999874
No 408
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=47.91 E-value=13 Score=36.62 Aligned_cols=16 Identities=13% Similarity=0.001 Sum_probs=12.5
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 89 fAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 89 FAYGQTSSGKTHTMEG 104 (365)
T ss_dssp EEECSTTSSHHHHHTB
T ss_pred EeecCCCCCCceEEec
Confidence 3348999999998753
No 409
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.82 E-value=34 Score=35.38 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=34.3
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHH
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQ 87 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e 87 (516)
.+..+++.+ .+....|.+|.|+|||..+..++.. .+.+++++++... ..|....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~ 327 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRN 327 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHH
Confidence 356666542 2235678899999999887766532 3457888887543 3444433
No 410
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=47.78 E-value=13 Score=36.66 Aligned_cols=15 Identities=20% Similarity=0.191 Sum_probs=12.3
Q ss_pred EEecCCCcHHHHHHH
Q 010184 48 IVLPCGAGKSLVGVS 62 (516)
Q Consensus 48 l~~~tG~GKTl~~i~ 62 (516)
..+.||+|||.+...
T Consensus 94 AYGqTGSGKTyTM~G 108 (359)
T 1x88_A 94 AYGQTGTGKTFTMEG 108 (359)
T ss_dssp EEECTTSSHHHHHTB
T ss_pred EeCCCCCCCceEEec
Confidence 348999999998764
No 411
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=47.60 E-value=13 Score=41.96 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
=..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 131 A~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im 165 (1052)
T 4anj_A 131 ADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165 (1052)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHH
Confidence 35677788877666688999999999998765444
No 412
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=47.46 E-value=17 Score=33.49 Aligned_cols=29 Identities=10% Similarity=0.200 Sum_probs=21.4
Q ss_pred EEEecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
+.....|.|||.+++.++. ..++++++|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4456789999999887663 3467888875
No 413
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=47.23 E-value=11 Score=37.12 Aligned_cols=16 Identities=19% Similarity=0.245 Sum_probs=13.0
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+-.+.||+|||.+...
T Consensus 89 fAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 89 FAYGQTGSGKTYTMLG 104 (360)
T ss_dssp EEECCTTSSHHHHHHB
T ss_pred EeeCCCCCCCCEEEec
Confidence 4459999999998864
No 414
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=47.06 E-value=14 Score=35.92 Aligned_cols=27 Identities=19% Similarity=0.128 Sum_probs=16.9
Q ss_pred HHHHHhCCCCcccEE-EecCCCcHHHHHHH
Q 010184 34 LSKMFGNGRARSGII-VLPCGAGKSLVGVS 62 (516)
Q Consensus 34 l~~~~~~~~~~~~il-~~~tG~GKTl~~i~ 62 (516)
+..++.+. ..+|+ .+.||+|||.+...
T Consensus 73 v~~~l~G~--n~tifAYGqTGSGKTyTm~G 100 (330)
T 2h58_A 73 VTSCIDGF--NVCIFAYGQTGAGKTYTMEG 100 (330)
T ss_dssp HHHHHTTC--CEEEEEESSTTSSHHHHHTB
T ss_pred HHHHhCCC--EEEEEeECCCCCCCcEEEec
Confidence 34445443 13343 48999999998753
No 415
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=46.89 E-value=11 Score=31.70 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.4
Q ss_pred ccEEEecCCCcHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (516)
-.+|.+|+|+|||-+.-+
T Consensus 25 ~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 568999999999976433
No 416
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=46.87 E-value=14 Score=40.38 Aligned_cols=34 Identities=24% Similarity=0.109 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
..|.+.|+..+...+.||.++.|+|||..+-.++
T Consensus 128 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 128 DKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 3667778776555688889999999997764443
No 417
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=46.83 E-value=14 Score=36.14 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=11.9
Q ss_pred EEEecCCCcHHHHHH
Q 010184 47 IIVLPCGAGKSLVGV 61 (516)
Q Consensus 47 il~~~tG~GKTl~~i 61 (516)
+..+.||+|||.+..
T Consensus 88 fAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 88 FAYGQTGSGKTYTMG 102 (344)
T ss_dssp EEESSTTSSHHHHHC
T ss_pred EEecccCCCceEeec
Confidence 334899999999873
No 418
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=46.71 E-value=15 Score=33.17 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=20.5
Q ss_pred EecCCCcHHHHHHHHHH---hcCCCEEEEEe
Q 010184 49 VLPCGAGKSLVGVSAAC---RIKKSCLCLAT 76 (516)
Q Consensus 49 ~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P 76 (516)
....|.|||.+++.++. +.++++++|=.
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 9 SGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 35679999999887663 34678888753
No 419
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=46.67 E-value=10 Score=33.77 Aligned_cols=23 Identities=22% Similarity=0.144 Sum_probs=17.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
....|.+|.|+|||..+-.++..
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45578899999999877655543
No 420
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=46.60 E-value=14 Score=36.42 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=12.4
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+-.+.||+|||.+...
T Consensus 94 fAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 94 FAYGQTGAGKSYTMMG 109 (366)
T ss_dssp EEECSTTSSHHHHHTB
T ss_pred EEeCCCCCCCceEeeC
Confidence 3348999999998754
No 421
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=46.49 E-value=12 Score=36.74 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=12.5
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 110 fAYGqTGSGKTyTm~G 125 (355)
T 3lre_A 110 LAYGATGAGKTHTMLG 125 (355)
T ss_dssp EEECCTTSSHHHHHTB
T ss_pred EEeCCCCCCceeeecc
Confidence 3348999999998753
No 422
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=46.47 E-value=24 Score=36.93 Aligned_cols=43 Identities=19% Similarity=0.154 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHH
Q 010184 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.+.-|+-..+.+..++.. +..+-..|+++.|.|||..+..++.
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 355688888888888763 2335678899999999999887763
No 423
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=46.43 E-value=12 Score=39.59 Aligned_cols=24 Identities=17% Similarity=-0.052 Sum_probs=20.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+.+|.+|+|+|||..+-.++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 789999999999998877665554
No 424
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=46.42 E-value=16 Score=33.48 Aligned_cols=31 Identities=13% Similarity=0.034 Sum_probs=23.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHh--cCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR--IKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~--~~~~~Lvl~ 75 (516)
-.++.+..|+|||..+..++.. .+++++++-
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4567799999999888776533 356777776
No 425
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=46.15 E-value=15 Score=40.01 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.1
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (516)
..|...|+..+...+.||.++.|+|||..+=.+
T Consensus 160 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i 192 (770)
T 1w9i_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192 (770)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHHhhcCCcEEEEecCCCCcchHHHHHH
Confidence 367777877665568889999999999775443
No 426
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=45.90 E-value=36 Score=33.13 Aligned_cols=35 Identities=23% Similarity=0.034 Sum_probs=25.1
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P 76 (516)
+....+|++++|+|||.....++.. .+++++++..
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~ 115 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV 115 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence 3346788899999999888776543 3567766653
No 427
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=45.71 E-value=15 Score=33.92 Aligned_cols=27 Identities=33% Similarity=0.176 Sum_probs=19.7
Q ss_pred EecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 49 VLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 49 ~~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
....|.|||.++..++. ..++++|+|=
T Consensus 25 s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 25 SGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35679999999887663 3467888764
No 428
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=45.62 E-value=14 Score=36.79 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=12.1
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 139 fAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 139 FAYGQTGSGKTHTMGG 154 (387)
T ss_dssp EEESCTTSSHHHHHC-
T ss_pred EEecCCCCCCCeEecc
Confidence 3348999999998765
No 429
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=45.52 E-value=15 Score=36.30 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=12.6
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 105 fAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 105 FAYGQTGTGKTHTMVG 120 (373)
T ss_dssp EEECSTTSSHHHHHTB
T ss_pred EeecCCCCCcceeccc
Confidence 3348999999998754
No 430
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=45.49 E-value=12 Score=37.45 Aligned_cols=27 Identities=15% Similarity=0.131 Sum_probs=17.4
Q ss_pred HHHHHhCCCCcccEEE-ecCCCcHHHHHHH
Q 010184 34 LSKMFGNGRARSGIIV-LPCGAGKSLVGVS 62 (516)
Q Consensus 34 l~~~~~~~~~~~~il~-~~tG~GKTl~~i~ 62 (516)
+..++.+. ..+|++ +.||+|||.+...
T Consensus 131 v~~~l~G~--n~tifAYGqTGSGKTyTM~G 158 (412)
T 3u06_A 131 IQSALDGY--NICIFAYGQTGSGKTYTMDG 158 (412)
T ss_dssp HHHHHTTC--CEEEEEESSTTSSHHHHHTE
T ss_pred HHHHHCCC--ceEEEEecCCCCCCeeEecC
Confidence 44455543 234444 8999999998753
No 431
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=45.27 E-value=8.3 Score=34.94 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=13.0
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
.-..|.+|.|+|||.++-.++
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp CEEEEECSCC----CHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 356788999999998876666
No 432
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=45.16 E-value=15 Score=40.10 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 144 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 144 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 4677778776655688899999999998765443
No 433
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=44.99 E-value=16 Score=34.47 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=19.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
..+|.+++|+|||.++-.++...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46788999999999998877653
No 434
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=44.99 E-value=16 Score=39.93 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
=..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 158 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 158 SDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 34667778776655688999999999998764443
No 435
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=44.97 E-value=12 Score=32.58 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
...|.+|.|+|||...-.++...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999998776655444
No 436
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.95 E-value=13 Score=32.99 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=18.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.-..|.+|.|+|||...-.++...
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367889999999998876666544
No 437
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=44.84 E-value=13 Score=36.79 Aligned_cols=13 Identities=23% Similarity=0.238 Sum_probs=11.3
Q ss_pred EecCCCcHHHHHH
Q 010184 49 VLPCGAGKSLVGV 61 (516)
Q Consensus 49 ~~~tG~GKTl~~i 61 (516)
.+.||+|||.+..
T Consensus 86 YGqTGSGKTyTM~ 98 (369)
T 3cob_A 86 YGQTGSGKTFTIY 98 (369)
T ss_dssp EECTTSSHHHHHT
T ss_pred ECCCCCCCeEeec
Confidence 4899999999875
No 438
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=44.78 E-value=24 Score=36.86 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE----eChhhHHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA----TNAVSVDQWAFQFKL 90 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~----P~~~L~~Qw~~e~~~ 90 (516)
.+++..++--+++....|.++.|+|||.....++.....-+.|++ -.++ +.+..++|.+
T Consensus 220 irvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~~~iGER~~E-v~e~~~~~~e 282 (600)
T 3vr4_A 220 QRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVYVGCGERGNE-MTDVVNEFPE 282 (600)
T ss_dssp CHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSSCSEEEEEEEEECHHH-HHHHHHHTTT
T ss_pred chhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccCCCEEEEEEecccHHH-HHHHHHHHHh
Confidence 477887766555568899999999999999888876655544443 2233 4444555544
No 439
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=44.56 E-value=18 Score=35.60 Aligned_cols=31 Identities=29% Similarity=0.112 Sum_probs=21.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
-..|++|.|+|||.+.-.++.. .++++++..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 4568899999999876655533 246666664
No 440
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=44.28 E-value=17 Score=33.31 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=19.7
Q ss_pred EecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 49 VLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 49 ~~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
....|.|||.+++.++. ..++++|+|=
T Consensus 9 s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 9 SGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35678999999887663 3467888764
No 441
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=44.17 E-value=14 Score=36.31 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=12.6
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 85 fAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 85 FAYGQTGAGKSYTMMG 100 (355)
T ss_dssp EEECSTTSSHHHHHTB
T ss_pred EEECCCCCCcceEeec
Confidence 3348999999998754
No 442
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=43.81 E-value=16 Score=37.04 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=13.4
Q ss_pred ccEE-EecCCCcHHHHHHH
Q 010184 45 SGII-VLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il-~~~tG~GKTl~~i~ 62 (516)
.+|+ .+.||+|||.+...
T Consensus 138 ~tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 138 TCIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp EEEEEESSTTSSHHHHHTC
T ss_pred eEEEEeCCCCCCCCEEeec
Confidence 3444 48999999998753
No 443
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=43.68 E-value=11 Score=37.01 Aligned_cols=17 Identities=29% Similarity=0.161 Sum_probs=14.1
Q ss_pred ccEEEecCCCcHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGV 61 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (516)
-.+|.+|||+|||.+.-
T Consensus 27 l~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE 43 (371)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56899999999997643
No 444
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=43.63 E-value=13 Score=32.13 Aligned_cols=31 Identities=10% Similarity=-0.182 Sum_probs=22.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
-..++++.|+|||.....++..+ +.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 46788999999998877766443 34665555
No 445
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=43.54 E-value=27 Score=32.12 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=33.1
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHH
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..|.++.|+|||.++-.+....+ +-++.|...+...+...|-.
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g--~~~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSC--EEECCTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CeEEecChHHHHHHHHHccc
Confidence 35789999999999988877655 33578888877888777653
No 446
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=42.71 E-value=18 Score=35.32 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..+++.++.-+++....|.+|.|+|||...-.++....
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57888875544445788999999999998555554443
No 447
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=42.51 E-value=13 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.1
Q ss_pred EEecCCCcHHHHHHH
Q 010184 48 IVLPCGAGKSLVGVS 62 (516)
Q Consensus 48 l~~~tG~GKTl~~i~ 62 (516)
..+.||+|||.+...
T Consensus 104 AYGqTGSGKTyTM~G 118 (388)
T 3bfn_A 104 AYGPTGAGKTHTMLG 118 (388)
T ss_dssp EESCTTSSHHHHHTB
T ss_pred eecCCCCCCCeEeec
Confidence 348999999998753
No 448
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=42.45 E-value=58 Score=28.38 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=46.9
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc--------c-cCCCcEEEEch
Q 010184 53 GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTY 121 (516)
Q Consensus 53 G~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~IvV~T~ 121 (516)
...|....+.++...+.++||+|+++.-+......|... + ..+..++|+.... + .+...|+|+|-
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~-g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-G---VEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH-T---CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHc-C---CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 457776666666666789999999999888888877764 3 3577788874321 1 36688999993
No 449
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=42.37 E-value=24 Score=31.77 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=21.9
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
.-.++.++.|+|||.++-.++..+..+
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 356777999999999998888777654
No 450
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=42.05 E-value=55 Score=33.60 Aligned_cols=66 Identities=15% Similarity=0.198 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC-CCE-EEE--E--eChhhHHHHHHHHHHh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK-KSC-LCL--A--TNAVSVDQWAFQFKLW 91 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~-~~~-Lvl--~--P~~~L~~Qw~~e~~~~ 91 (516)
++-.-=.+++..++.-+++.+..|.++-|+|||..++..+.+.+ ..+ .|+ + ..++ +.+..++|..-
T Consensus 144 epl~TGikaID~l~PigrGQR~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IGeR~~e-v~e~~~~l~~~ 215 (513)
T 3oaa_A 144 QPVQTGYKAVDSMIPIGRGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKAST-ISNVVRKLEEH 215 (513)
T ss_dssp CBCCCSCHHHHHHSCCBTTCBCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEESCCHHH-HHHHHHHHHHH
T ss_pred cccccceeeeccccccccCCEEEeecCCCCCcchHHHHHHHhhccCCceEEEEEecCChHH-HHHHHHHHhhc
Confidence 33334457888887666556889999999999999876665443 332 222 2 2233 55566666653
No 451
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=41.61 E-value=18 Score=36.09 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (516)
+-.--.+++..++.-+++....|++|.|+|||..+..++.
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHH
Confidence 4445567777766655556899999999999998866554
No 452
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=41.52 E-value=18 Score=32.83 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
-..|.+++|+|||.++-.++..++-++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 356678999999999999998888554
No 453
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=41.50 E-value=16 Score=40.22 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.2
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 157 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 157 DNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp HHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHH
Confidence 3667778776555578889999999998764433
No 454
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=41.21 E-value=13 Score=36.49 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=13.2
Q ss_pred ccEEE-ecCCCcHHHHHH
Q 010184 45 SGIIV-LPCGAGKSLVGV 61 (516)
Q Consensus 45 ~~il~-~~tG~GKTl~~i 61 (516)
.+|++ +.||+|||.+..
T Consensus 87 ~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 87 VCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eeEEEeCCCCCCCceEeC
Confidence 34444 899999999986
No 455
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=41.01 E-value=23 Score=33.45 Aligned_cols=31 Identities=16% Similarity=0.155 Sum_probs=21.0
Q ss_pred ccEEEe-cCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 45 SGIIVL-PCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 45 ~~il~~-~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
...+.. -.|.|||.++..++ +..++++|+|=
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 333444 46999999988765 33467888773
No 456
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=40.90 E-value=22 Score=34.29 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=16.7
Q ss_pred cEEEecCCCcHHHHHHHHHHhc
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~ 67 (516)
..|.+|.|+|||.++-.+....
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4667999999998876665443
No 457
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=40.89 E-value=16 Score=33.19 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=20.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
...+|.++.|+|||.++-.++..+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567779999999999888776654
No 458
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=40.87 E-value=20 Score=40.47 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (516)
..|...|+..+...+.||.++.|+|||..+=.+
T Consensus 160 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i 192 (1010)
T 1g8x_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192 (1010)
T ss_dssp HHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHH
Confidence 366777877665568888999999999875443
No 459
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=40.62 E-value=8.4 Score=34.16 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=18.7
Q ss_pred cEEEecCCCcHHHHHHHHHHhcC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+|.++.|+|||.++-.++..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 47889999999999887776653
No 460
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=40.56 E-value=17 Score=34.55 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=17.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-..|++++|+|||..+-.+....
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45677999999998886655443
No 461
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=40.24 E-value=20 Score=40.38 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
..|...|+..+...+.||.++.|+|||..+=.++
T Consensus 134 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 134 EGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp HHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3667778776655688899999999998764433
No 462
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=40.09 E-value=26 Score=33.13 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=22.3
Q ss_pred cccEEEecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
+...+.+--|.|||.+++.++. ..++++|+|=
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3444557779999999887653 3467777773
No 463
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=39.93 E-value=13 Score=37.34 Aligned_cols=25 Identities=24% Similarity=0.008 Sum_probs=20.0
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.-.++++++|+|||.++-.++...+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4567889999999999888776553
No 464
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=39.60 E-value=21 Score=34.24 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=25.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc-CCCEEEEEeCh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI-KKSCLCLATNA 78 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P~~ 78 (516)
-.+|.++.|+|||...-.++... +.++.||.|..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~ 40 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEF 40 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecC
Confidence 46889999999998766555443 56888888864
No 465
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=39.54 E-value=21 Score=32.26 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=18.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.-.+|.+|.|+|||...-.++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 467888999999998776655443
No 466
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=39.52 E-value=23 Score=31.90 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=19.4
Q ss_pred EecCCCcHHHHHHHHHH---hc-CCCEEEEE
Q 010184 49 VLPCGAGKSLVGVSAAC---RI-KKSCLCLA 75 (516)
Q Consensus 49 ~~~tG~GKTl~~i~~i~---~~-~~~~Lvl~ 75 (516)
..--|.|||.+++.++. .. ++++|+|=
T Consensus 11 s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 11 SAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp ESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 35579999999887663 33 66787774
No 467
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=39.43 E-value=14 Score=34.16 Aligned_cols=45 Identities=20% Similarity=0.165 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCCCCcccEE-EecCCCcHHHHHHHHHHh--cCCCEEEEE
Q 010184 30 QEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACR--IKKSCLCLA 75 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~i~~--~~~~~Lvl~ 75 (516)
|.++...|-.... +...+ ..--|.|||.+++.++.. .++++|+|=
T Consensus 15 ~~~~~~~~~~~~~-~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD 62 (267)
T 3k9g_A 15 QTQGPGSMDNKKP-KIITIASIKGGVGKSTSAIILATLLSKNNKVLLID 62 (267)
T ss_dssp -----------CC-EEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred hhcCcccCCCCCC-eEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEE
Confidence 4455555543321 22222 245689999998876533 456777763
No 468
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=38.56 E-value=22 Score=40.48 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
..|...|+..+..-+.||.++.|+|||..+=.++
T Consensus 144 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 177 (1080)
T 2dfs_A 144 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (1080)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHH
Confidence 3667778776655688889999999998765444
No 469
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=38.44 E-value=21 Score=32.12 Aligned_cols=24 Identities=25% Similarity=0.033 Sum_probs=18.5
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
.-|.+..|+|||.++-.+.. .+-+
T Consensus 12 iglTGgigsGKStv~~~l~~-~g~~ 35 (210)
T 4i1u_A 12 IGLTGGIGSGKTTVADLFAA-RGAS 35 (210)
T ss_dssp EEEECCTTSCHHHHHHHHHH-TTCE
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCc
Confidence 45779999999999887765 5433
No 470
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=38.31 E-value=30 Score=35.46 Aligned_cols=65 Identities=14% Similarity=0.212 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-CCCEE-EEE--e--ChhhHHHHHHHHHH
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-KKSCL-CLA--T--NAVSVDQWAFQFKL 90 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~~~~L-vl~--P--~~~L~~Qw~~e~~~ 90 (516)
++-.-=.+++..++.-+++.+..|.++.|+|||..++..+.+. ...+. |++ - .++ +.++.+++..
T Consensus 144 epl~TGiraID~l~PigrGQR~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iGeR~~E-v~~~~~~~~~ 214 (502)
T 2qe7_A 144 EPLQTGIKAIDSMIPIGRGQRELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIGQKQST-VAGVVETLRQ 214 (502)
T ss_dssp SBCCCSCHHHHHSSCCBTTCBCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEESCCHHH-HHHHHHHHHH
T ss_pred CccccceeecccccccccCCEEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECCCcchH-HHHHHHHHhh
Confidence 3333345778877665555689999999999999988655443 33322 222 1 233 5556666665
No 471
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=37.94 E-value=25 Score=37.34 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=24.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---CCCEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (516)
...+|.+.+|+|||.++-.+...+ +.+++.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 346778999999999998888776 5566655
No 472
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=37.81 E-value=28 Score=35.81 Aligned_cols=60 Identities=12% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-CCCEE-EEE--e--ChhhHHHHHHHHHH
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-KKSCL-CLA--T--NAVSVDQWAFQFKL 90 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~~~~L-vl~--P--~~~L~~Qw~~e~~~ 90 (516)
=.+++..++.-+++.+..|.++.|+|||..++..+.+. ...+. |++ - .++ +.++.+++..
T Consensus 162 GiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~IGeR~~E-v~e~~~~~~~ 227 (515)
T 2r9v_A 162 GIKAIDSMIPIGRGQRELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVAIGQKKSA-IARIIDKLRQ 227 (515)
T ss_dssp SCHHHHHHSCEETTCBEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEEESCCHHH-HHHHHHHHHH
T ss_pred CccccccccccccCCEEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEEcCCCcHH-HHHHHHHHHh
Confidence 35788877665555689999999999999988666544 33322 222 1 223 5555566654
No 473
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=37.62 E-value=1.4e+02 Score=25.57 Aligned_cols=65 Identities=14% Similarity=0.090 Sum_probs=42.1
Q ss_pred CCCcHHHHHHHHHHhc--CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc--------c-cCCCcEEEEc
Q 010184 52 CGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTT 120 (516)
Q Consensus 52 tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~IvV~T 120 (516)
....|--..+.++... .+++||.|+++.-+......|... +..+..++|+.... + .+...|+|+|
T Consensus 28 ~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 28 EESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp CGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 3467766666666554 478999999998888777777663 23577777764321 1 3567899998
No 474
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=37.60 E-value=10 Score=32.84 Aligned_cols=22 Identities=18% Similarity=-0.049 Sum_probs=17.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (516)
...|++++|+|||...-.++..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4578899999999887666543
No 475
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=37.52 E-value=14 Score=36.57 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=13.4
Q ss_pred ccEE-EecCCCcHHHHHHH
Q 010184 45 SGII-VLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il-~~~tG~GKTl~~i~ 62 (516)
.+|+ .+.||+|||.+...
T Consensus 117 ~tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 117 VCIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp EEEEEECSTTSSHHHHHTB
T ss_pred eEEEEeCCCCCCCceEeec
Confidence 3344 48999999998754
No 476
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=37.40 E-value=20 Score=31.48 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=15.7
Q ss_pred ccEEEecCCCcHHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i 64 (516)
...|.+|.|+|||...-.++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~ 22 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 56789999999997665544
No 477
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=37.29 E-value=46 Score=33.45 Aligned_cols=54 Identities=9% Similarity=0.066 Sum_probs=39.3
Q ss_pred HHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccc-----cCCCcEEEEch
Q 010184 64 ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-----RGNAGVVVTTY 121 (516)
Q Consensus 64 i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~IvV~T~ 121 (516)
+...++++||+||++.-+....+.|... ...+..++|..++.. .+...|+|+|-
T Consensus 173 l~~~~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 173 ILADKRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HHHCCSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSCC--------CCCSEEEESS
T ss_pred HHhcCCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 3444679999999999888888888875 246888888654321 36789999994
No 478
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=37.17 E-value=18 Score=33.12 Aligned_cols=24 Identities=17% Similarity=-0.116 Sum_probs=18.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-..|.+|.|+|||.++-.++..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 456779999999998876665443
No 479
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=36.60 E-value=28 Score=35.83 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=21.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl 74 (516)
-..|+++.|+|||.+.-.++.. .++.+++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4568899999999876655433 34677776
No 480
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=36.33 E-value=18 Score=32.69 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=20.9
Q ss_pred EEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 48 IVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
+.+.-|.|||.++..++.. .++++|+|=
T Consensus 5 vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 5 VAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3677899999999887644 356777773
No 481
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=36.20 E-value=31 Score=30.61 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=24.2
Q ss_pred EEEecCCCcHHHHHHHHHH---hcCCCEEEEE--eChhhHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVSAAC---RIKKSCLCLA--TNAVSVDQWAF 86 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~--P~~~L~~Qw~~ 86 (516)
+....-|.|||.+++.++. ..+ ++++|= |... ...|..
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~-~~~~~~ 47 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS-ATGWGK 47 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH-HHHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC-HHHHhc
Confidence 4456679999999887663 345 777753 4433 444543
No 482
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=35.60 E-value=18 Score=33.30 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.3
Q ss_pred ecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 50 LPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 50 ~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
...|.|||.++..++. ..++++|+|=
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 4569999999887663 3467888874
No 483
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=35.29 E-value=1.4e+02 Score=26.11 Aligned_cols=119 Identities=11% Similarity=0.030 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHH---HH-HHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLV---GV-SAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~---~i-~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
+-|..++..++.... .-.++.++-|++||.. .+ ......++.+.+|+|+..... ++.+-.++....
T Consensus 37 ~~~~~a~~~l~~s~~-~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~----~l~~~~~l~~~t----- 106 (189)
T 2l8b_A 37 AGYSDAVSVLAQDRP-SLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQM----NMKQDERLSGEL----- 106 (189)
T ss_dssp HHHHHHHHHHHHHSC-CEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHH----HHSCTTTCSSCS-----
T ss_pred ccchhHHHHHhccCC-ceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHH----HHHhhcCcCcce-----
Confidence 568888888876532 3677889999999988 33 244667899999999986322 233211111111
Q ss_pred CCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcc-cceEEEEeccCC
Q 010184 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGLTATLV 182 (516)
Q Consensus 104 ~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~-~~~~l~LTATp~ 182 (516)
++....+.... .| ..-+.+|||||-.+..+....++.... ...++.|..+.-
T Consensus 107 --------------~t~~~ll~~~~-----------~~--tp~s~lIVD~AekLS~kE~~~Lld~A~~~naqvvll~~~~ 159 (189)
T 2l8b_A 107 --------------ITGRRQLLEGM-----------AF--TPGSTVIVDQGEKLSLKETLTLLDGAARHNVQVLITDSGQ 159 (189)
T ss_dssp --------------SSTTTTTTTSC-----------CC--CCCCEEEEEESSSHHHHHHHHHHHHHHHTTCCEEEEESST
T ss_pred --------------eehhhhhcCCC-----------CC--CCCCEEEEechhhcCHHHHHHHHHHHHhcCCEEEEeCCcc
Confidence 12222111110 01 223489999999998886666665432 234566655554
Q ss_pred C
Q 010184 183 R 183 (516)
Q Consensus 183 ~ 183 (516)
|
T Consensus 160 R 160 (189)
T 2l8b_A 160 R 160 (189)
T ss_dssp T
T ss_pred c
Confidence 3
No 484
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=35.24 E-value=20 Score=31.90 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=15.0
Q ss_pred ccEEEecCCCcHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~ 63 (516)
-.+|.+|+|+|||.+.-++
T Consensus 25 ~~~I~G~NgsGKStil~ai 43 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAI 43 (203)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHH
Confidence 5689999999999764443
No 485
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=35.03 E-value=21 Score=32.20 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=19.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
-..|.++.|+|||.++-.++.. ++.+.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4567799999999876555544 4444443
No 486
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=34.93 E-value=85 Score=30.94 Aligned_cols=71 Identities=20% Similarity=0.273 Sum_probs=47.7
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh----C-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEe-CCCcc-----cccc
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL----R-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDN-----SIDI 330 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L----~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t-~~~~~-----GlDl 330 (516)
.++.++||.|+++.-+...++.+ + +..++|+....++..... ...|+|+| ..+.. .+.+
T Consensus 50 ~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~------~~~ivv~T~~~l~~~~~~~~~~~ 123 (494)
T 1wp9_A 50 KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA------RAKVIVATPQTIENDLLAGRISL 123 (494)
T ss_dssp HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEEEECSCSCHHHHHHHHH------HCSEEEECHHHHHHHHHTTSCCT
T ss_pred cCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheEEeeCCcchhhhhhhcc------CCCEEEecHHHHHHHHhcCCcch
Confidence 46789999999987766555544 3 345889888776554332 35788887 33222 3567
Q ss_pred cccCEEEEecCC
Q 010184 331 PEANVIIQISSH 342 (516)
Q Consensus 331 p~a~~vI~~~~~ 342 (516)
...++||+...|
T Consensus 124 ~~~~~vIiDEaH 135 (494)
T 1wp9_A 124 EDVSLIVFDEAH 135 (494)
T ss_dssp TSCSEEEEETGG
T ss_pred hhceEEEEECCc
Confidence 788899987555
No 487
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=34.86 E-value=20 Score=35.27 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=13.3
Q ss_pred ccEEEecCCCcHHHHH
Q 010184 45 SGIIVLPCGAGKSLVG 60 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (516)
-.+|.+|+|+|||-..
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5678999999999654
No 488
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=34.81 E-value=21 Score=36.83 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=17.1
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
.+.+|+++||+|||...-+++
T Consensus 168 pHlLIaG~TGSGKSt~L~~li 188 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMI 188 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 478999999999998765554
No 489
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=34.60 E-value=34 Score=31.96 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=20.0
Q ss_pred EEecCCCcHHHHHHHHHH---hcCCCEEEE
Q 010184 48 IVLPCGAGKSLVGVSAAC---RIKKSCLCL 74 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~---~~~~~~Lvl 74 (516)
+...-|.|||.++..++. ..++++|+|
T Consensus 7 vs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 7 IYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 457789999999887663 346677776
No 490
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=34.55 E-value=33 Score=35.01 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC---CCEEEEE--e--ChhhHHHHHHHHHHh
Q 010184 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA--T--NAVSVDQWAFQFKLW 91 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~--P--~~~L~~Qw~~e~~~~ 91 (516)
-=.++|..++--+++.+..|.++.|+|||.....++.... .-+.|++ - .++ +.++.+++..-
T Consensus 139 TGir~ID~l~pigkGQr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER~rE-v~e~~~~~~~~ 207 (482)
T 2ck3_D 139 TGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTRE-GNDLYHEMIES 207 (482)
T ss_dssp CSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCCHHH-HHHHHHHHHHH
T ss_pred cceEEEecccccccCCeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCcchH-HHHHHHHhhhc
Confidence 3358888776545556889999999999999988887642 1233333 2 223 44555666553
No 491
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=34.52 E-value=23 Score=30.76 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=17.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (516)
-.+|+++.|+|||...-.++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5678899999999876665543
No 492
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=34.48 E-value=24 Score=33.10 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=19.0
Q ss_pred ecCCCcHHHHHHHHHH---hcCCCEEEEE
Q 010184 50 LPCGAGKSLVGVSAAC---RIKKSCLCLA 75 (516)
Q Consensus 50 ~~tG~GKTl~~i~~i~---~~~~~~Lvl~ 75 (516)
...|.|||.++..++. ..++++|+|=
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4579999999887663 3467777753
No 493
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=34.16 E-value=34 Score=31.37 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=19.8
Q ss_pred EEecCCCcHHHHHHHHHH---hcCCCEEEE
Q 010184 48 IVLPCGAGKSLVGVSAAC---RIKKSCLCL 74 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~---~~~~~~Lvl 74 (516)
+...-|.|||.++..++. +.++++|+|
T Consensus 6 vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 356789999999887663 346688775
No 494
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=33.47 E-value=51 Score=32.96 Aligned_cols=54 Identities=7% Similarity=-0.013 Sum_probs=40.7
Q ss_pred HHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccc-----cCCCcEEEEch
Q 010184 64 ACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-----RGNAGVVVTTY 121 (516)
Q Consensus 64 i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~IvV~T~ 121 (516)
+...++++||+||++.-++...+.+.+. +..+..++|..++.. .+..+|+|+|-
T Consensus 167 l~~~~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 167 ITEFDGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKTFESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp HHSCSSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTTHHHHTTHHHHSCCSEEEECG
T ss_pred HHcCCCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCccHHHHHHhhcCCCCeEEEECc
Confidence 3444678999999999888888888875 346888888755331 36789999994
No 495
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=33.33 E-value=24 Score=36.68 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=31.9
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.+++..++--+++....|.++.|+|||.....++.....-+.|++
T Consensus 209 irvID~l~PigrGqr~~Ifg~~g~GKT~l~~~ia~~~~~~v~V~~ 253 (578)
T 3gqb_A 209 MRILDVLFPVAMGGTAAIPGPFGSGKSVTQQSLAKWSNADVVVYV 253 (578)
T ss_dssp CHHHHTTSCEETTCEEEECCCTTSCHHHHHHHHHHHSSCSEEEEE
T ss_pred chhhhhcccccCCCEEeeeCCCCccHHHHHHHHHhccCCCEEEEE
Confidence 366776654444458899999999999999888776554444433
No 496
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=33.11 E-value=31 Score=35.50 Aligned_cols=40 Identities=18% Similarity=0.292 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (516)
+-.-=.+++..++.-+++.+..|.++.|+|||..++..+.
T Consensus 145 pl~TGiraID~l~PigrGQR~~I~g~~g~GKT~Lal~~I~ 184 (510)
T 2ck3_A 145 PMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTSIAIDTII 184 (510)
T ss_dssp BCCCSCHHHHHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred cccccceeeccccccccCCEEEEecCCCCCchHHHHHHHH
Confidence 3333457888877655556899999999999999876553
No 497
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=33.01 E-value=1.3e+02 Score=25.45 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=44.1
Q ss_pred CCcHHHHHHHHHHhc-CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc--------c-cCCCcEEEEc
Q 010184 53 GAGKSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTT 120 (516)
Q Consensus 53 G~GKTl~~i~~i~~~-~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~IvV~T 120 (516)
...|.-....++... .+++||.|+++.-+......|... + ..+..++|+.... + .+...|+|+|
T Consensus 15 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-~---~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-N---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-C---CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 345665555555554 468999999999888888877764 2 3577788774321 1 3567899988
No 498
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=32.89 E-value=24 Score=36.71 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=39.7
Q ss_pred HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE----eChhhHHHHHHHHHH
Q 010184 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA----TNAVSVDQWAFQFKL 90 (516)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~----P~~~L~~Qw~~e~~~ 90 (516)
.+++..++--+++....|.++.|+|||.....++.....-+.|++ -.++ +.+..++|.+
T Consensus 215 irvID~l~PigkGqr~~I~g~~g~GKT~L~~~ia~~~~~~~~V~~~iGER~~E-v~e~~~~~~e 277 (588)
T 3mfy_A 215 QRVIDTFFPQAKGGTAAIPGPAGSGKTVTQHQLAKWSDAQVVIYIGCGERGNE-MTDVLEEFPK 277 (588)
T ss_dssp CHHHHHHSCEETTCEEEECSCCSHHHHHHHHHHHHHSSCSEEEEEECCSSSSH-HHHHHHHTTT
T ss_pred cchhhccCCcccCCeEEeecCCCCCHHHHHHHHHhccCCCEEEEEEecccHHH-HHHHHHHHHH
Confidence 477887765455568899999999999888777665554444443 2334 5556666654
No 499
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=32.78 E-value=44 Score=33.28 Aligned_cols=42 Identities=26% Similarity=0.409 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
++-..=.+++..++.-+++.+..|.++.|+|||..+..++..
T Consensus 157 e~~~tGiraID~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~ 198 (427)
T 3l0o_A 157 DPKIYSTRLIDLFAPIGKGQRGMIVAPPKAGKTTILKEIANG 198 (427)
T ss_dssp STTCHHHHHHHHHSCCBTTCEEEEEECTTCCHHHHHHHHHHH
T ss_pred cchhccchhhhhcccccCCceEEEecCCCCChhHHHHHHHHH
Confidence 344556688887766555568999999999999988665543
No 500
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=32.53 E-value=23 Score=33.96 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=18.8
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
+..+|.++.|+|||-+++.++.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 4678889999999999988775
Done!