Query 010184
Match_columns 516
No_of_seqs 380 out of 2592
Neff 8.8
Searched_HMMs 13730
Date Mon Mar 25 21:43:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010184.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010184hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fz4a1 c.37.1.19 (A:24-229) D 99.9 1.7E-27 1.3E-31 220.7 18.3 155 6-181 51-205 (206)
2 d2bmfa2 c.37.1.14 (A:178-482) 99.9 6.8E-26 5E-30 222.5 15.1 247 44-361 10-289 (305)
3 d1rifa_ c.37.1.23 (A:) DNA hel 99.9 8.9E-26 6.5E-30 218.7 14.8 162 23-198 111-279 (282)
4 d2fwra1 c.37.1.19 (A:257-456) 99.9 5.9E-24 4.3E-28 195.8 12.4 160 212-386 2-199 (200)
5 d1z63a1 c.37.1.19 (A:432-661) 99.9 5.2E-23 3.8E-27 193.7 15.2 165 23-201 10-183 (230)
6 d1z3ix2 c.37.1.19 (X:92-389) R 99.9 5.6E-23 4.1E-27 201.1 13.2 163 24-198 54-248 (298)
7 d1wp9a1 c.37.1.19 (A:1-200) pu 99.9 1.4E-22 1E-26 186.2 13.8 153 24-188 8-173 (200)
8 d1z5za1 c.37.1.19 (A:663-906) 99.8 2E-20 1.5E-24 177.3 18.0 135 250-397 68-209 (244)
9 d1z3ix1 c.37.1.19 (X:390-735) 99.8 4.3E-20 3.1E-24 182.9 20.7 138 250-399 100-244 (346)
10 d1s2ma2 c.37.1.19 (A:252-422) 99.8 2.4E-20 1.7E-24 166.8 15.5 131 249-399 16-151 (171)
11 d2j0sa2 c.37.1.19 (A:244-411) 99.8 7.6E-20 5.5E-24 162.6 15.2 117 251-385 20-141 (168)
12 d1t5ia_ c.37.1.19 (A:) Spliceo 99.8 5.8E-20 4.3E-24 163.5 13.8 108 249-361 11-123 (168)
13 d1fuka_ c.37.1.19 (A:) Initiat 99.8 4.3E-20 3.2E-24 163.2 12.8 107 250-361 12-123 (162)
14 d2p6ra3 c.37.1.19 (A:1-202) He 99.8 6.4E-20 4.7E-24 168.7 12.8 163 25-203 25-200 (202)
15 d1hv8a2 c.37.1.19 (A:211-365) 99.8 1.3E-19 9.3E-24 159.2 14.1 106 250-361 14-124 (155)
16 d1a1va1 c.37.1.14 (A:190-325) 99.8 6.9E-19 5E-23 151.0 13.1 122 44-181 9-136 (136)
17 d2rb4a1 c.37.1.19 (A:307-474) 99.8 9.9E-19 7.2E-23 155.3 14.3 118 252-386 19-146 (168)
18 d1oywa3 c.37.1.19 (A:207-406) 99.8 9.5E-19 6.9E-23 159.7 14.3 106 251-361 16-126 (200)
19 d1c4oa2 c.37.1.19 (A:410-583) 99.8 6.8E-19 5E-23 155.2 12.7 94 266-360 29-131 (174)
20 d1t5la2 c.37.1.19 (A:415-595) 99.8 1.4E-18 1E-22 155.6 13.3 94 266-360 29-131 (181)
21 d1oywa2 c.37.1.19 (A:1-206) Re 99.8 1.6E-19 1.2E-23 166.4 7.0 145 24-183 24-186 (206)
22 d1wp9a2 c.37.1.19 (A:201-486) 99.8 1E-18 7.4E-23 169.5 11.7 126 250-391 142-281 (286)
23 d1gkub1 c.37.1.16 (B:1-250) He 99.8 7.9E-19 5.7E-23 165.5 10.6 147 24-185 42-218 (237)
24 d1gm5a3 c.37.1.19 (A:286-549) 99.7 6E-18 4.4E-22 159.7 12.9 150 22-184 80-244 (264)
25 d2eyqa3 c.37.1.19 (A:546-778) 99.7 2.3E-17 1.7E-21 152.7 15.2 151 21-184 51-216 (233)
26 d2j0sa1 c.37.1.19 (A:22-243) P 99.7 1.1E-17 8.3E-22 155.2 12.9 149 24-183 38-202 (222)
27 d1yksa1 c.37.1.14 (A:185-324) 99.7 7.7E-18 5.6E-22 144.3 10.0 124 44-182 8-140 (140)
28 d1hv8a1 c.37.1.19 (A:3-210) Pu 99.7 2.1E-17 1.6E-21 152.2 11.8 148 25-182 26-187 (208)
29 d2g9na1 c.37.1.19 (A:21-238) I 99.7 4.4E-17 3.2E-21 150.9 13.3 149 24-183 33-198 (218)
30 d1veca_ c.37.1.19 (A:) DEAD bo 99.7 8.9E-17 6.5E-21 147.6 13.5 148 24-182 24-188 (206)
31 d1t6na_ c.37.1.19 (A:) Spliceo 99.7 1.7E-16 1.2E-20 145.8 13.9 149 24-183 22-189 (207)
32 d1wrba1 c.37.1.19 (A:164-401) 99.7 3.3E-16 2.4E-20 147.0 14.2 149 24-183 42-219 (238)
33 d1qdea_ c.37.1.19 (A:) Initiat 99.6 4.3E-16 3.1E-20 143.6 12.7 149 24-183 31-194 (212)
34 d2p6ra4 c.37.1.19 (A:203-403) 99.6 2.1E-15 1.5E-19 137.5 12.9 107 266-385 38-186 (201)
35 d1s2ma1 c.37.1.19 (A:46-251) P 99.6 6.8E-15 5E-19 134.9 14.5 148 24-182 22-185 (206)
36 d2eyqa5 c.37.1.19 (A:779-989) 99.5 1.9E-14 1.4E-18 129.3 13.5 121 266-400 29-156 (211)
37 d1q0ua_ c.37.1.19 (A:) Probabl 99.5 3.7E-14 2.7E-18 130.2 10.8 148 25-183 23-190 (209)
38 d1jr6a_ c.37.1.14 (A:) HCV hel 99.5 1.5E-14 1.1E-18 123.1 7.2 84 267-360 34-125 (138)
39 d1gm5a4 c.37.1.19 (A:550-755) 99.4 1.6E-14 1.2E-18 131.0 3.3 109 251-361 13-137 (206)
40 d1gkub2 c.37.1.16 (B:251-498) 99.4 6.6E-15 4.8E-19 139.1 0.5 102 249-361 10-116 (248)
41 d1a1va2 c.37.1.14 (A:326-624) 99.2 1.3E-12 9.3E-17 122.6 4.1 90 268-360 36-143 (299)
42 d1yksa2 c.37.1.14 (A:325-623) 98.7 1.5E-08 1.1E-12 96.4 9.8 88 268-361 36-146 (299)
43 d1tf5a4 c.37.1.19 (A:396-570) 98.7 1.2E-07 8.5E-12 81.8 13.8 104 252-361 19-136 (175)
44 d1w36d1 c.37.1.19 (D:2-360) Ex 98.2 1.5E-06 1.1E-10 84.8 9.2 146 23-183 146-299 (359)
45 d1tf5a3 c.37.1.19 (A:1-226,A:3 98.1 2.7E-06 2E-10 77.8 8.7 149 25-184 80-255 (273)
46 d1nkta3 c.37.1.19 (A:-15-225,A 98.1 2E-06 1.5E-10 79.0 6.3 149 25-184 97-270 (288)
47 d1nkta4 c.37.1.19 (A:397-615) 97.8 0.00016 1.2E-08 63.0 13.8 105 251-361 18-180 (219)
48 d1t5la1 c.37.1.19 (A:2-414) Nu 97.7 3.6E-05 2.7E-09 75.8 9.4 77 17-93 3-81 (413)
49 d2gnoa2 c.37.1.20 (A:11-208) g 97.5 0.00026 1.9E-08 62.5 10.6 105 30-180 2-117 (198)
50 d1a5ta2 c.37.1.20 (A:1-207) de 97.4 0.0007 5.1E-08 60.0 12.3 43 25-67 2-48 (207)
51 d1uaaa1 c.37.1.19 (A:2-307) DE 97.2 0.00021 1.5E-08 67.2 7.0 64 25-93 1-71 (306)
52 d1c4oa1 c.37.1.19 (A:2-409) Nu 96.9 0.0015 1.1E-07 64.1 10.0 69 25-93 8-78 (408)
53 d1pjra1 c.37.1.19 (A:1-318) DE 96.7 0.0011 8.1E-08 62.5 7.4 63 25-92 11-80 (318)
54 d1sxjb2 c.37.1.20 (B:7-230) Re 96.6 0.002 1.4E-07 57.5 7.7 41 28-68 21-61 (224)
55 d1ixza_ c.37.1.20 (A:) AAA dom 96.6 0.0027 2E-07 57.7 8.7 36 43-78 42-77 (247)
56 d1sxjc2 c.37.1.20 (C:12-238) R 96.6 0.0036 2.6E-07 55.8 9.2 41 27-67 19-59 (227)
57 d1njfa_ c.37.1.20 (A:) delta p 96.5 0.0085 6.2E-07 53.9 11.3 40 28-67 18-58 (239)
58 d1sxjd2 c.37.1.20 (D:26-262) R 96.4 0.0031 2.2E-07 56.5 8.0 40 28-67 18-57 (237)
59 d1xx6a1 c.37.1.24 (A:2-142) Th 96.3 0.015 1.1E-06 47.6 10.7 35 45-79 9-46 (141)
60 d1sxje2 c.37.1.20 (E:4-255) Re 96.3 0.0017 1.2E-07 58.9 5.2 41 27-67 16-57 (252)
61 d1iqpa2 c.37.1.20 (A:2-232) Re 96.3 0.0065 4.7E-07 54.2 9.2 41 27-67 29-69 (231)
62 d1e32a2 c.37.1.20 (A:201-458) 96.1 0.0035 2.5E-07 57.4 6.2 37 42-78 37-73 (258)
63 d1l8qa2 c.37.1.20 (A:77-289) C 95.9 0.027 2E-06 49.5 11.3 41 45-86 38-81 (213)
64 d1ixsb2 c.37.1.20 (B:4-242) Ho 95.8 0.025 1.8E-06 50.4 10.9 32 43-74 35-66 (239)
65 d1xbta1 c.37.1.24 (A:18-150) T 95.8 0.027 1.9E-06 45.5 9.9 34 46-79 5-41 (133)
66 d2qy9a2 c.37.1.10 (A:285-495) 95.7 0.027 2E-06 49.3 10.2 32 45-76 11-45 (211)
67 g1qhh.1 c.37.1.19 (A:,B:,C:,D: 95.6 0.0088 6.4E-07 61.5 7.4 64 25-93 11-81 (623)
68 d2b8ta1 c.37.1.24 (A:11-149) T 95.6 0.02 1.5E-06 46.7 8.1 34 46-79 5-41 (139)
69 d1d2na_ c.37.1.20 (A:) Hexamer 95.5 0.0062 4.5E-07 55.2 5.3 33 43-75 40-72 (246)
70 d1jbka_ c.37.1.20 (A:) ClpB, A 95.5 0.029 2.1E-06 48.4 9.4 41 26-66 26-66 (195)
71 d1okkd2 c.37.1.10 (D:97-303) G 95.4 0.046 3.4E-06 47.7 10.5 51 44-94 7-62 (207)
72 d1vmaa2 c.37.1.10 (A:82-294) G 95.2 0.057 4.2E-06 47.2 10.5 50 44-93 12-66 (213)
73 d1ls1a2 c.37.1.10 (A:89-295) G 95.2 0.015 1.1E-06 51.1 6.5 49 46-94 13-66 (207)
74 d1gm5a3 c.37.1.19 (A:286-549) 95.0 0.046 3.3E-06 49.6 9.6 101 249-354 114-224 (264)
75 d2eyqa3 c.37.1.19 (A:546-778) 94.4 0.084 6.1E-06 46.8 9.6 96 249-346 86-191 (233)
76 d1r7ra3 c.37.1.20 (A:471-735) 94.4 0.011 7.9E-07 54.1 3.6 34 43-76 41-74 (265)
77 d1r6bx2 c.37.1.20 (X:169-436) 94.2 0.039 2.8E-06 50.2 6.9 41 26-66 22-62 (268)
78 d1in4a2 c.37.1.20 (A:17-254) H 94.2 0.041 3E-06 48.8 7.1 35 42-76 34-68 (238)
79 d1gvnb_ c.37.1.21 (B:) Plasmid 93.9 0.028 2E-06 50.8 5.5 34 43-76 32-65 (273)
80 d1ofha_ c.37.1.20 (A:) HslU {H 93.8 0.023 1.7E-06 53.1 4.7 36 42-77 48-83 (309)
81 d1g41a_ c.37.1.20 (A:) HslU {H 93.7 0.024 1.7E-06 55.8 4.8 36 43-78 49-84 (443)
82 d1j8yf2 c.37.1.10 (F:87-297) G 93.7 0.2 1.4E-05 43.6 10.3 50 45-94 14-68 (211)
83 d1w44a_ c.37.1.11 (A:) NTPase 93.0 0.015 1.1E-06 54.4 1.9 30 47-76 127-158 (321)
84 d1sxja2 c.37.1.20 (A:295-547) 93.0 0.072 5.3E-06 47.5 6.6 34 44-77 53-86 (253)
85 d1tf7a2 c.37.1.11 (A:256-497) 92.8 0.1 7.3E-06 46.1 7.3 58 33-91 14-76 (242)
86 d1qvra2 c.37.1.20 (A:149-535) 92.7 0.24 1.8E-05 47.3 10.2 41 26-66 26-66 (387)
87 d1kaga_ c.37.1.2 (A:) Shikimat 92.7 0.041 3E-06 45.1 4.0 29 44-72 3-31 (169)
88 d1u94a1 c.37.1.11 (A:6-268) Re 92.3 0.24 1.7E-05 44.7 9.1 54 32-85 40-99 (263)
89 d1pzna2 c.37.1.11 (A:96-349) D 92.3 0.12 9E-06 45.7 7.1 59 32-90 23-92 (254)
90 d1fnna2 c.37.1.20 (A:1-276) CD 92.2 0.078 5.7E-06 47.4 5.7 45 24-68 18-68 (276)
91 d1lv7a_ c.37.1.20 (A:) AAA dom 92.1 0.058 4.2E-06 48.7 4.6 36 43-78 45-80 (256)
92 d1qvra3 c.37.1.20 (A:536-850) 92.1 0.089 6.5E-06 49.0 6.1 32 138-169 118-149 (315)
93 d1xp8a1 c.37.1.11 (A:15-282) R 91.9 0.28 2E-05 44.3 9.1 55 32-86 43-103 (268)
94 d1szpa2 c.37.1.11 (A:145-395) 91.7 0.075 5.5E-06 46.8 4.9 57 32-88 21-88 (251)
95 d1um8a_ c.37.1.20 (A:) ClpX {H 91.2 0.12 8.8E-06 49.1 6.1 34 42-75 67-100 (364)
96 d1mo6a1 c.37.1.11 (A:1-269) Re 91.1 0.36 2.6E-05 43.5 9.0 57 32-88 46-108 (269)
97 d1p9ra_ c.37.1.11 (A:) Extrace 90.6 0.13 9.2E-06 49.7 5.6 43 24-67 140-182 (401)
98 d1zp6a1 c.37.1.25 (A:6-181) Hy 90.5 0.089 6.5E-06 43.7 3.9 32 44-75 5-36 (176)
99 d2iyva1 c.37.1.2 (A:2-166) Shi 90.3 0.1 7.3E-06 43.3 4.1 29 44-72 2-30 (165)
100 d1rkba_ c.37.1.1 (A:) Adenylat 90.2 0.088 6.4E-06 43.5 3.5 28 45-72 6-33 (173)
101 d1v5wa_ c.37.1.11 (A:) Meiotic 90.0 0.24 1.8E-05 43.5 6.7 60 32-91 24-94 (258)
102 d1ye8a1 c.37.1.11 (A:1-178) Hy 89.9 0.24 1.7E-05 41.1 6.2 23 46-68 3-25 (178)
103 d1n0wa_ c.37.1.11 (A:) DNA rep 89.8 0.12 9E-06 44.2 4.3 36 32-67 10-47 (242)
104 d1ny5a2 c.37.1.20 (A:138-384) 89.6 0.38 2.8E-05 42.7 7.7 26 144-169 93-118 (247)
105 d1viaa_ c.37.1.2 (A:) Shikimat 89.5 0.11 8.2E-06 42.9 3.6 28 45-72 2-29 (161)
106 d1svma_ c.37.1.20 (A:) Papillo 89.3 0.17 1.2E-05 47.9 5.2 44 32-75 142-186 (362)
107 d1e6ca_ c.37.1.2 (A:) Shikimat 89.3 0.11 8.3E-06 43.2 3.6 29 44-72 3-31 (170)
108 d2bdta1 c.37.1.25 (A:1-176) Hy 89.3 0.13 9.3E-06 42.4 3.9 27 45-71 4-30 (176)
109 d1g6oa_ c.37.1.11 (A:) Hexamer 89.3 0.23 1.6E-05 46.3 6.0 49 30-80 155-205 (323)
110 d1tf7a1 c.37.1.11 (A:14-255) C 88.9 0.29 2.1E-05 42.5 6.2 57 33-90 14-76 (242)
111 d1lw7a2 c.37.1.1 (A:220-411) T 88.8 0.12 8.5E-06 43.1 3.3 30 43-72 7-36 (192)
112 d1qhxa_ c.37.1.3 (A:) Chloramp 88.5 0.2 1.4E-05 41.3 4.5 30 45-74 5-34 (178)
113 d1r6bx3 c.37.1.20 (X:437-751) 88.3 0.21 1.5E-05 46.3 5.0 92 45-169 54-145 (315)
114 d1em8a_ c.128.1.1 (A:) DNA pol 87.8 2 0.00015 34.4 10.4 114 256-408 25-143 (147)
115 d2i3ba1 c.37.1.11 (A:1-189) Ca 87.3 0.15 1.1E-05 42.2 3.1 25 43-67 1-25 (189)
116 d1y63a_ c.37.1.1 (A:) Probable 86.5 0.24 1.7E-05 40.8 3.8 29 45-73 7-35 (174)
117 d1knqa_ c.37.1.17 (A:) Glucona 85.9 0.25 1.8E-05 40.5 3.7 29 44-72 7-35 (171)
118 d1e4va1 c.37.1.1 (A:1-121,A:15 85.0 0.3 2.2E-05 40.7 3.8 26 45-70 2-27 (179)
119 d1zina1 c.37.1.1 (A:1-125,A:16 84.8 0.3 2.2E-05 40.7 3.7 26 45-70 2-27 (182)
120 d1ly1a_ c.37.1.1 (A:) Polynucl 84.7 0.34 2.5E-05 38.9 3.9 24 45-68 4-27 (152)
121 d1s3ga1 c.37.1.1 (A:1-125,A:16 84.7 0.31 2.3E-05 40.8 3.7 27 46-72 3-29 (182)
122 d2cdna1 c.37.1.1 (A:1-181) Ade 84.3 0.32 2.3E-05 40.6 3.6 27 45-71 2-28 (181)
123 d1cr2a_ c.37.1.11 (A:) Gene 4 84.2 1.1 8E-05 39.9 7.7 55 34-89 25-84 (277)
124 d2ak3a1 c.37.1.1 (A:0-124,A:16 84.0 0.34 2.4E-05 41.1 3.7 24 45-68 8-31 (189)
125 d1w5sa2 c.37.1.20 (A:7-293) CD 84.0 0.23 1.7E-05 44.4 2.7 44 24-67 18-70 (287)
126 d2i1qa2 c.37.1.11 (A:65-322) D 83.9 0.39 2.9E-05 41.8 4.3 36 32-67 21-58 (258)
127 d1ak2a1 c.37.1.1 (A:14-146,A:1 83.9 0.35 2.5E-05 40.7 3.7 30 45-76 5-34 (190)
128 d1qf9a_ c.37.1.1 (A:) UMP/CMP 83.8 0.3 2.2E-05 41.3 3.2 26 44-69 7-32 (194)
129 d1akya1 c.37.1.1 (A:3-130,A:16 83.0 0.36 2.6E-05 40.4 3.4 26 45-70 4-29 (180)
130 d1ukza_ c.37.1.1 (A:) Uridylat 82.2 0.44 3.2E-05 40.3 3.7 26 44-69 9-34 (196)
131 d1zaka1 c.37.1.1 (A:3-127,A:15 82.1 0.39 2.8E-05 40.4 3.3 27 45-71 5-31 (189)
132 d1byia_ c.37.1.10 (A:) Dethiob 81.3 0.64 4.7E-05 39.6 4.5 31 44-74 2-36 (224)
133 d1teva_ c.37.1.1 (A:) UMP/CMP 80.6 0.5 3.6E-05 39.8 3.5 30 45-76 3-32 (194)
134 d3adka_ c.37.1.1 (A:) Adenylat 80.6 0.61 4.4E-05 39.3 4.0 30 45-76 10-39 (194)
135 d1nlfa_ c.37.1.11 (A:) Hexamer 80.1 1.4 9.9E-05 39.1 6.5 47 44-91 30-89 (274)
136 d1m8pa3 c.37.1.15 (A:391-573) 79.8 0.52 3.8E-05 38.6 3.3 23 46-68 9-31 (183)
137 d1e9ra_ c.37.1.11 (A:) Bacteri 79.5 0.86 6.2E-05 43.6 5.2 37 44-80 51-90 (433)
138 d1tuea_ c.37.1.20 (A:) Replica 77.7 0.89 6.5E-05 38.7 4.0 37 32-68 41-78 (205)
139 d1g5ta_ c.37.1.11 (A:) ATP:cor 76.3 1.2 8.6E-05 36.3 4.3 45 138-182 87-137 (157)
140 d1gkya_ c.37.1.1 (A:) Guanylat 75.8 1 7.4E-05 37.7 4.0 26 44-69 2-27 (186)
141 d1q3ta_ c.37.1.1 (A:) CMP kina 75.2 0.88 6.4E-05 39.0 3.5 23 48-70 8-30 (223)
142 d1lvga_ c.37.1.1 (A:) Guanylat 74.3 1 7.5E-05 37.8 3.6 26 45-70 2-27 (190)
143 d1ckea_ c.37.1.1 (A:) CMP kina 74.2 0.95 6.9E-05 38.6 3.4 25 47-71 7-31 (225)
144 d2eyqa5 c.37.1.19 (A:779-989) 73.5 3.5 0.00026 35.1 6.9 89 65-169 28-125 (211)
145 d1khta_ c.37.1.1 (A:) Adenylat 71.4 0.95 7E-05 37.1 2.6 31 45-75 3-36 (190)
146 d2b2na1 c.37.1.19 (A:26-333) T 70.2 6 0.00044 35.7 8.2 69 57-128 3-92 (308)
147 d1htwa_ c.37.1.18 (A:) Hypothe 70.2 0.68 5E-05 37.9 1.3 37 46-82 36-72 (158)
148 d1rz3a_ c.37.1.6 (A:) Hypothet 70.0 2.3 0.00017 35.0 5.0 20 48-67 27-46 (198)
149 d2fnaa2 c.37.1.20 (A:1-283) Ar 69.8 2 0.00014 37.6 4.6 47 25-75 15-61 (283)
150 d1yj5a2 c.37.1.1 (A:351-522) 5 69.6 1.3 9.5E-05 36.6 3.1 22 44-65 15-36 (172)
151 d1x6va3 c.37.1.4 (A:34-228) Ad 69.4 0.68 5E-05 38.6 1.2 21 48-68 24-44 (195)
152 d1np6a_ c.37.1.10 (A:) Molybdo 69.2 2.3 0.00016 34.1 4.5 34 45-78 4-40 (170)
153 d1nksa_ c.37.1.1 (A:) Adenylat 67.7 1.3 9.1E-05 36.5 2.6 31 46-76 4-37 (194)
154 d1w36b1 c.37.1.19 (B:1-485) Ex 67.5 2.9 0.00021 39.9 5.7 48 44-91 17-79 (485)
155 d1odfa_ c.37.1.6 (A:) Hypothet 66.1 5.2 0.00038 35.7 6.7 31 34-64 16-48 (286)
156 d1ihua1 c.37.1.10 (A:1-296) Ar 63.3 3.4 0.00025 36.6 4.9 35 41-75 6-43 (296)
157 d1uj2a_ c.37.1.6 (A:) Uridine- 62.9 2 0.00015 36.4 3.0 22 47-68 6-27 (213)
158 d1xpua3 c.37.1.11 (A:129-417) 62.3 4.5 0.00033 36.2 5.4 42 26-67 26-67 (289)
159 d1znwa1 c.37.1.1 (A:20-201) Gu 62.3 2.1 0.00015 35.3 3.0 25 44-68 3-27 (182)
160 d1m7ga_ c.37.1.4 (A:) Adenosin 61.5 5.6 0.00041 33.6 5.8 38 38-75 19-60 (208)
161 d1kgda_ c.37.1.1 (A:) Guanylat 61.2 2.8 0.0002 34.6 3.6 25 44-68 4-28 (178)
162 d1ihua2 c.37.1.10 (A:308-586) 57.7 7.5 0.00055 34.0 6.2 36 40-75 17-55 (279)
163 d1g8pa_ c.37.1.20 (A:) ATPase 57.5 2.1 0.00015 39.2 2.3 25 44-68 29-53 (333)
164 d1knxa2 c.91.1.2 (A:133-309) H 56.8 2.7 0.0002 34.8 2.7 23 44-66 16-38 (177)
165 d1bifa1 c.37.1.7 (A:37-249) 6- 56.7 2.8 0.0002 35.0 2.9 30 46-75 5-37 (213)
166 d1d0xa2 c.37.1.9 (A:2-33,A:80- 55.8 3.9 0.00028 41.7 4.2 40 25-64 105-146 (712)
167 d1w7ja2 c.37.1.9 (A:63-792) My 54.7 4.1 0.0003 41.7 4.2 40 25-64 74-115 (730)
168 d1gkub1 c.37.1.16 (B:1-250) He 54.5 17 0.0012 30.8 7.9 86 250-339 69-169 (237)
169 d1br2a2 c.37.1.9 (A:80-789) My 54.1 4.3 0.00031 41.4 4.2 40 25-64 71-112 (710)
170 d1lkxa_ c.37.1.9 (A:) Myosin S 53.7 4.4 0.00032 41.1 4.2 40 25-64 66-107 (684)
171 d2mysa2 c.37.1.9 (A:4-33,A:80- 53.4 4.5 0.00033 41.8 4.3 40 25-64 103-144 (794)
172 d1tmka_ c.37.1.1 (A:) Thymidyl 52.8 8 0.00058 32.6 5.3 30 44-73 4-33 (214)
173 d1ko7a2 c.91.1.2 (A:130-298) H 51.9 4.2 0.00031 33.3 3.0 23 44-66 16-38 (169)
174 d1kkma_ c.91.1.2 (A:) HPr kina 51.9 4.1 0.0003 33.6 2.9 23 44-66 15-37 (176)
175 d1kk8a2 c.37.1.9 (A:1-28,A:77- 50.3 4.5 0.00033 41.8 3.6 40 25-64 101-142 (789)
176 d1xjca_ c.37.1.10 (A:) Molybdo 50.0 6.4 0.00047 31.4 4.0 31 47-77 5-38 (165)
177 d1v8ka_ c.37.1.9 (A:) Kinesin 49.3 5.6 0.00041 36.8 3.9 18 45-62 115-133 (362)
178 d1u0ja_ c.37.1.20 (A:) Rep 40 48.1 15 0.0011 32.1 6.5 42 25-67 85-128 (267)
179 d1ry6a_ c.37.1.9 (A:) Kinesin 48.1 4.8 0.00035 36.7 3.2 18 45-62 86-104 (330)
180 d2eyqa2 c.37.1.19 (A:349-465) 47.8 8 0.00058 29.3 3.9 70 257-339 24-97 (117)
181 d2vp4a1 c.37.1.1 (A:12-208) De 46.4 3.5 0.00026 34.1 1.7 26 45-70 11-36 (197)
182 d1bg2a_ c.37.1.9 (A:) Kinesin 45.7 7 0.00051 35.5 3.9 18 45-62 78-95 (323)
183 d1sq5a_ c.37.1.6 (A:) Pantothe 43.4 8 0.00059 34.9 3.8 21 47-67 84-104 (308)
184 d1vhta_ c.37.1.1 (A:) Dephosph 43.2 7.2 0.00052 32.7 3.3 22 48-70 8-29 (208)
185 d1uf9a_ c.37.1.1 (A:) Dephosph 42.9 8.4 0.00061 31.5 3.7 23 48-71 8-30 (191)
186 d1goja_ c.37.1.9 (A:) Kinesin 42.6 7 0.00051 36.0 3.3 17 46-62 83-99 (354)
187 d1sdma_ c.37.1.9 (A:) Kinesin 42.3 7.3 0.00053 36.0 3.5 27 34-62 67-94 (364)
188 d2ocpa1 c.37.1.1 (A:37-277) De 42.1 11 0.00079 32.0 4.5 29 44-72 3-31 (241)
189 d1s96a_ c.37.1.1 (A:) Guanylat 41.6 9.6 0.0007 31.9 3.9 24 45-68 4-27 (205)
190 d1jjva_ c.37.1.1 (A:) Dephosph 41.2 8.7 0.00064 32.0 3.5 24 48-72 7-30 (205)
191 d1hv8a1 c.37.1.19 (A:3-210) Pu 41.1 47 0.0035 27.1 8.5 75 260-340 64-153 (208)
192 d1x88a1 c.37.1.9 (A:18-362) Ki 41.0 8.6 0.00063 35.2 3.7 16 46-61 84-99 (345)
193 d1yrba1 c.37.1.10 (A:1-244) AT 41.0 11 0.00077 31.9 4.1 29 46-74 3-33 (244)
194 d2b8ea1 c.108.1.7 (A:416-434,A 40.4 68 0.005 24.3 8.7 47 266-312 35-82 (135)
195 d2ncda_ c.37.1.9 (A:) Kinesin 40.2 7.8 0.00057 35.9 3.3 27 34-61 117-143 (368)
196 d1c4oa2 c.37.1.19 (A:410-583) 40.1 34 0.0025 27.6 7.0 51 67-121 30-89 (174)
197 d2zfia1 c.37.1.9 (A:4-352) Kin 39.5 8.8 0.00064 35.2 3.5 17 46-62 90-106 (349)
198 d1g3qa_ c.37.1.10 (A:) Cell di 39.4 10 0.00076 31.8 3.9 25 50-74 10-37 (237)
199 d1jr6a_ c.37.1.14 (A:) HCV hel 38.9 30 0.0022 26.6 6.3 51 67-121 34-86 (138)
200 d2b3ta1 c.66.1.30 (A:2-275) N5 38.8 1E+02 0.0076 26.4 10.8 99 24-126 88-188 (274)
201 d2p67a1 c.37.1.10 (A:1-327) LA 36.9 22 0.0016 32.1 5.8 38 41-78 52-94 (327)
202 d1nn5a_ c.37.1.1 (A:) Thymidyl 36.6 16 0.0012 30.4 4.6 28 47-74 7-37 (209)
203 g1xew.1 c.37.1.12 (X:,Y:) Smc 36.5 9.5 0.00069 34.1 3.2 16 45-60 28-43 (329)
204 d1yksa2 c.37.1.14 (A:325-623) 35.7 30 0.0022 30.6 6.5 55 63-121 31-90 (299)
205 d2jdid3 c.37.1.11 (D:82-357) C 35.5 17 0.0012 32.0 4.5 43 24-66 49-91 (276)
206 d1l2ta_ c.37.1.12 (A:) MJ0796 35.2 11 0.00081 32.3 3.2 23 44-67 32-54 (230)
207 d1cp2a_ c.37.1.10 (A:) Nitroge 35.2 15 0.0011 31.7 4.3 30 46-75 4-36 (269)
208 d1p5zb_ c.37.1.1 (B:) Deoxycyt 35.1 6.1 0.00044 33.6 1.5 33 44-76 3-35 (241)
209 d1hyqa_ c.37.1.10 (A:) Cell di 34.8 17 0.0012 30.3 4.4 28 47-74 6-36 (232)
210 d1c9ka_ c.37.1.11 (A:) Adenosy 34.6 17 0.0012 29.7 4.2 44 47-91 3-46 (180)
211 d2afhe1 c.37.1.10 (E:1-289) Ni 34.5 16 0.0012 32.0 4.4 29 46-74 5-36 (289)
212 d2pmka1 c.37.1.12 (A:467-707) 34.4 9.2 0.00067 33.1 2.6 22 44-65 30-51 (241)
213 d4tmka_ c.37.1.1 (A:) Thymidyl 33.5 12 0.0009 30.9 3.3 23 45-67 4-26 (210)
214 d1zh2a1 c.23.1.1 (A:2-120) Tra 33.4 61 0.0044 23.7 7.2 90 266-359 22-117 (119)
215 d1w1wa_ c.37.1.12 (A:) Smc hea 32.8 9.7 0.00071 35.2 2.6 18 45-62 27-44 (427)
216 d2a9pa1 c.23.1.1 (A:2-118) DNA 32.7 74 0.0054 23.1 7.6 89 266-358 22-116 (117)
217 d1nija1 c.37.1.10 (A:2-223) Hy 32.6 15 0.0011 30.9 3.7 31 46-76 6-37 (222)
218 d1moza_ c.37.1.8 (A:) ADP-ribo 32.4 7.3 0.00053 31.5 1.5 26 37-62 11-36 (182)
219 d1hv8a2 c.37.1.19 (A:211-365) 32.1 53 0.0038 25.4 6.9 62 56-121 16-86 (155)
220 d1jj7a_ c.37.1.12 (A:) Peptide 31.6 12 0.00089 32.4 2.9 22 44-65 41-62 (251)
221 d3b60a1 c.37.1.12 (A:329-581) 31.0 12 0.00085 32.6 2.6 21 44-64 42-62 (253)
222 d2fh5b1 c.37.1.8 (B:63-269) Si 30.8 13 0.00092 30.7 2.8 22 44-65 1-22 (207)
223 d1ys7a2 c.23.1.1 (A:7-127) Tra 30.8 92 0.0067 22.7 8.0 89 266-358 23-118 (121)
224 d1deka_ c.37.1.1 (A:) Deoxynuc 30.7 11 0.00079 32.0 2.4 23 46-68 4-26 (241)
225 d2a9pa1 c.23.1.1 (A:2-118) DNA 30.6 91 0.0066 22.5 8.7 79 69-182 1-82 (117)
226 d1a7ja_ c.37.1.6 (A:) Phosphor 30.5 10 0.00074 33.7 2.2 30 46-75 7-39 (288)
227 d1mv5a_ c.37.1.12 (A:) Multidr 30.1 11 0.00082 32.5 2.4 21 44-64 29-49 (242)
228 d1r0wa_ c.37.1.12 (A:) Cystic 29.6 15 0.0011 32.5 3.2 21 44-64 63-83 (281)
229 d1t5ia_ c.37.1.19 (A:) Spliceo 29.4 76 0.0055 24.8 7.6 62 56-121 14-85 (168)
230 d1wzna1 c.66.1.43 (A:1-251) Hy 29.1 1.4E+02 0.01 24.3 11.1 113 32-153 28-145 (251)
231 d1sgwa_ c.37.1.12 (A:) Putativ 28.8 14 0.001 30.7 2.7 22 44-65 28-49 (200)
232 d1qhla_ c.37.1.12 (A:) Cell di 28.7 3.7 0.00027 33.6 -1.2 18 45-62 26-43 (222)
233 d2a5yb3 c.37.1.20 (B:109-385) 28.5 46 0.0033 28.7 6.5 54 23-76 21-84 (277)
234 d2hyda1 c.37.1.12 (A:324-578) 28.4 13 0.00092 32.5 2.4 18 44-61 45-62 (255)
235 d2onka1 c.37.1.12 (A:1-240) Mo 28.3 15 0.0011 31.6 2.8 20 45-64 26-45 (240)
236 d1g2912 c.37.1.12 (1:1-240) Ma 28.1 16 0.0012 31.4 3.1 21 44-64 30-50 (240)
237 d1e69a_ c.37.1.12 (A:) Smc hea 27.9 9.2 0.00067 33.8 1.4 15 45-59 26-40 (308)
238 d1s2ma2 c.37.1.19 (A:252-422) 27.7 78 0.0057 24.8 7.4 63 55-121 18-90 (171)
239 d1ozbi_ g.74.1.1 (I:) Preprote 26.2 8.1 0.00059 20.6 0.4 8 50-57 7-14 (26)
240 g1f2t.1 c.37.1.12 (A:,B:) Rad5 26.1 16 0.0012 31.4 2.8 16 45-60 25-40 (292)
241 d1t5la2 c.37.1.19 (A:415-595) 26.1 38 0.0028 27.4 5.0 73 67-157 30-111 (181)
242 d1f6ba_ c.37.1.8 (A:) SAR1 {Ch 25.9 20 0.0015 28.2 3.2 21 43-63 13-33 (186)
243 d2qm8a1 c.37.1.10 (A:5-327) Me 24.9 30 0.0022 31.0 4.5 35 41-75 49-86 (323)
244 d2awna2 c.37.1.12 (A:4-235) Ma 24.7 21 0.0015 30.5 3.1 20 44-63 27-46 (232)
245 d1u0la2 c.37.1.8 (A:69-293) Pr 24.7 21 0.0015 30.3 3.1 32 29-63 84-115 (225)
246 d2j0sa1 c.37.1.19 (A:22-243) P 24.4 69 0.005 26.5 6.6 68 267-339 84-166 (222)
247 d1kgsa2 c.23.1.1 (A:2-123) Pho 24.3 1E+02 0.0076 22.3 7.1 90 266-359 23-119 (122)
248 d2qtvb1 c.37.1.8 (B:24-189) SA 24.2 20 0.0015 27.4 2.8 21 45-65 2-22 (166)
249 d1xhfa1 c.23.1.1 (A:2-122) Aer 24.1 73 0.0053 23.3 6.1 89 266-358 24-118 (121)
250 d1r8sa_ c.37.1.8 (A:) ADP-ribo 24.1 20 0.0015 27.5 2.7 20 45-64 2-21 (160)
251 d3dhwc1 c.37.1.12 (C:1-240) Me 23.7 19 0.0014 30.9 2.6 19 44-62 32-50 (240)
252 d1fuka_ c.37.1.19 (A:) Initiat 22.8 1.3E+02 0.0097 23.1 7.8 51 68-122 27-86 (162)
253 d1gsia_ c.37.1.1 (A:) Thymidyl 22.7 22 0.0016 29.0 2.9 28 47-74 4-34 (208)
254 d1zj6a1 c.37.1.8 (A:2-178) ADP 22.3 37 0.0027 26.5 4.2 27 36-63 9-35 (177)
255 g1ii8.1 c.37.1.12 (A:,B:) Rad5 22.1 20 0.0015 31.4 2.6 16 45-60 25-40 (369)
256 d1ji0a_ c.37.1.12 (A:) Branche 21.8 21 0.0015 30.5 2.6 21 44-64 33-53 (240)
257 d1v43a3 c.37.1.12 (A:7-245) Hy 21.7 26 0.0019 30.0 3.1 22 44-65 33-54 (239)
258 d1oywa3 c.37.1.19 (A:207-406) 21.6 65 0.0047 26.3 5.7 50 68-121 30-88 (200)
259 d3d31a2 c.37.1.12 (A:1-229) Su 21.6 17 0.0012 31.0 1.8 22 44-65 27-48 (229)
260 d1peya_ c.23.1.1 (A:) Sporulat 21.4 1.4E+02 0.01 21.5 7.8 88 266-357 23-117 (119)
261 d3raba_ c.37.1.8 (A:) Rab3a {R 21.1 25 0.0019 27.6 2.8 21 45-65 7-27 (169)
262 d2p6ra4 c.37.1.19 (A:203-403) 20.9 76 0.0055 25.7 6.1 25 67-91 39-63 (201)
263 d1e0sa_ c.37.1.8 (A:) ADP-ribo 20.9 27 0.002 27.5 3.0 30 33-63 3-32 (173)
264 d1f9va_ c.37.1.9 (A:) Kinesin 20.6 22 0.0016 32.1 2.5 16 47-62 87-102 (342)
265 d1krwa_ c.23.1.1 (A:) NTRC rec 20.4 1.5E+02 0.011 21.5 8.9 44 137-182 39-86 (123)
266 d1ksha_ c.37.1.8 (A:) ADP-ribo 20.1 25 0.0018 27.3 2.6 19 45-63 4-22 (165)
No 1
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.95 E-value=1.7e-27 Score=220.68 Aligned_cols=155 Identities=27% Similarity=0.487 Sum_probs=128.7
Q ss_pred cCccCCCCCCccccCCCCCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHH
Q 010184 6 DFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85 (516)
Q Consensus 6 df~~~~~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~ 85 (516)
+|.++..++.........++|||||.++++.++.++ ++++++|||+|||++++.++++.++++|||||+++|+.||.
T Consensus 51 ~~~d~~~~~~~~~~~~~~~~Lr~yQ~eav~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p~~~L~~q~~ 127 (206)
T d2fz4a1 51 EFVDNAADPIPTPYFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWK 127 (206)
T ss_dssp CEEEESCCCCCCCCCCCCCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHH
T ss_pred ceeeccccccCCCCCCCCCCcCHHHHHHHHHHHhCC---CcEEEeCCCCCceehHHhHHHHhcCceeEEEcccchHHHHH
Confidence 455544444445556677899999999999988765 78999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHH
Q 010184 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (516)
Q Consensus 86 ~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (516)
++|.+|.. ..+..+.+..+. ...|+|+|++.+... .+.+ ..+|++||+||||+++++.+.++
T Consensus 128 ~~~~~~~~---~~~~~~~~~~~~----~~~i~i~t~~~~~~~----------~~~~-~~~~~lvIiDEaH~~~a~~~~~i 189 (206)
T d2fz4a1 128 ERLGIFGE---EYVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQI 189 (206)
T ss_dssp HHHGGGCG---GGEEEESSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEECSSCCCTTTHHHH
T ss_pred HHHHhhcc---cchhhccccccc----ccccccceehhhhhh----------hHhh-CCcCCEEEEECCeeCCcHHHHHH
Confidence 99999743 356777776543 367999999988553 2222 36899999999999999999999
Q ss_pred HhhcccceEEEEeccC
Q 010184 166 ISLTKSHCKLGLTATL 181 (516)
Q Consensus 166 l~~~~~~~~l~LTATp 181 (516)
+..+.++++||||||+
T Consensus 190 ~~~~~~~~~lgLTATl 205 (206)
T d2fz4a1 190 AQMSIAPFRLGLTATF 205 (206)
T ss_dssp HHTCCCSEEEEEEESC
T ss_pred HhccCCCcEEEEecCC
Confidence 9998899999999998
No 2
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}
Probab=99.93 E-value=6.8e-26 Score=222.50 Aligned_cols=247 Identities=19% Similarity=0.139 Sum_probs=157.9
Q ss_pred cccEEEecCCCcHHHHHHHHH----HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
+++++.+|||+|||++++.++ ...+.++||++|+++|+.||.++|+..... .......+ ...+...|+++
T Consensus 10 ~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~Ptr~La~q~~~~l~~~~~~--~~~~~~~~----~~~~~~~i~~~ 83 (305)
T d2bmfa2 10 RLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIR--YQTPAIRA----EHTGREIVDLM 83 (305)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHTTTSCCB--CCC------------CCCSEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEccHHHHHHHHHHHHhcCCcc--eeeeEEee----cccCccccccC
Confidence 588999999999998765433 223678999999999999999998875311 11111111 12345779999
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh--HHHHHhh---cccceEEEEeccCCCCccchhhhHhh
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--FRKVISL---TKSHCKLGLTATLVREDERITDLNFL 194 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~--~~~~l~~---~~~~~~l~LTATp~~~~~~~~~l~~~ 194 (516)
|++.+.....+ .....+++++|+||+|++.... +...+.. -.....+++|||+.........
T Consensus 84 t~~~l~~~~~~---------~~~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~~~~~~~~v~~SAT~~~~~~~~~~---- 150 (305)
T d2bmfa2 84 CHATFTMRLLS---------PIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQ---- 150 (305)
T ss_dssp EHHHHHHHHTS---------SSCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC----
T ss_pred CcHHHHHHHhc---------CccccceeEEEeeeeeecchhhHHHHHHHHHhhccccceEEEeecCCCcceeeecc----
Confidence 99887543211 1112568999999999998653 2222222 2345789999999753322000
Q ss_pred hCCccccccHHHHHhCCCcccceeEEEeccCCHHHHHHHHHhhhhHHHHHHhhhCcchHHHHHHHHHHHhhcCCCeEEEE
Q 010184 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (516)
Q Consensus 195 ~gp~~~~~~~~~l~~~g~l~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~k~~~~~~ll~~~~~~~~~k~iVF 274 (516)
...++.......+.. .+..... ... ..+++++||
T Consensus 151 -----------------~~~~~~~~~~~~~~~------------------------~~~~~~~----~~~-~~~~~~lvf 184 (305)
T d2bmfa2 151 -----------------SNAPIMDEEREIPER------------------------SWNSGHE----WVT-DFKGKTVWF 184 (305)
T ss_dssp -----------------CSSCEEEEECCCCCS------------------------CCSSCCH----HHH-SSCSCEEEE
T ss_pred -----------------cCCcceEEEEeccHH------------------------HHHHHHH----HHH-hhCCCEEEE
Confidence 000000000000000 0000000 111 457799999
Q ss_pred eccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEe----------
Q 010184 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI---------- 339 (516)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~---------- 339 (516)
|+++..++.++..| ++..+||+++...| ..|+++ ..+++|+|+++++|+|++ ++.||..
T Consensus 185 ~~~~~~~~~l~~~L~~~~~~~~~l~~~~~~~~~----~~~~~~-~~~~lvaT~~~~~G~~~~-~~~Vi~~~~~~~~~~~~ 258 (305)
T d2bmfa2 185 VPSIKAGNDIAACLRKNGKKVIQLSRKTFDSEY----IKTRTN-DWDFVVTTDISEMGANFK-AERVIDPRRCMKPVILT 258 (305)
T ss_dssp CSCHHHHHHHHHHHHHHTCCCEECCTTCHHHHG----GGGGTS-CCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEEC
T ss_pred eccHHHHHHHHHHHHhCCCCEEEeCCcChHHHH----hhhhcc-chhhhhhhHHHHhcCCCC-ccEEEEcCCceeeeEec
Confidence 99999999999999 35678999875544 467776 899999999999999995 6665521
Q ss_pred cCC---------CCCHHHHHHHhhcccccCC
Q 010184 340 SSH---------AGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 340 ~~~---------~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++ +.|+..|+||+||+||.|+
T Consensus 259 ~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~ 289 (305)
T d2bmfa2 259 DGEERVILAGPMPVTHSSAAQRRGRVGRNPK 289 (305)
T ss_dssp SSSCEEEEEEEEECCHHHHHHHHTTSSCSSS
T ss_pred CCCCceEEeccccCCHHHHhhhhcCcCcCCC
Confidence 111 1378899999999999995
No 3
>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}
Probab=99.93 E-value=8.9e-26 Score=218.67 Aligned_cols=162 Identities=23% Similarity=0.318 Sum_probs=131.3
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~ 98 (516)
.++||+||.+|+..++.++ ++++++|||+|||+++..++. ...+++|||||+++|+.||.++|.+|.......
T Consensus 111 ~~~~rdyQ~~av~~~l~~~---~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~~~~~~~~~ 187 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGG
T ss_pred ccccchHHHHHHHHHHhcC---CceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHHhhcccccc
Confidence 4789999999999999876 899999999999999887763 335789999999999999999999997666666
Q ss_pred EEEEeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc-ccceEE
Q 010184 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKL 175 (516)
Q Consensus 99 v~~~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~-~~~~~l 175 (516)
+....++.... ......|+|+|++++....+ ..+ ..+++||+||||++.++.+.+++..+ ++.+++
T Consensus 188 ~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~~---------~~~--~~f~~VIvDEaH~~~a~~~~~il~~~~~~~~rl 256 (282)
T d1rifa_ 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EWF--SQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (282)
T ss_dssp EEECSTTCSSTTCCCTTCSEEEECHHHHTTSCG---------GGG--GGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEE
T ss_pred ceeecceecccccccccceEEEEeeehhhhhcc---------ccc--CCCCEEEEECCCCCCchhHHHHHHhccCCCeEE
Confidence 66665553321 23467899999998866432 122 56899999999999999999888776 567889
Q ss_pred EEeccCCCCccchhhhHhhhCCc
Q 010184 176 GLTATLVREDERITDLNFLIGPK 198 (516)
Q Consensus 176 ~LTATp~~~~~~~~~l~~~~gp~ 198 (516)
||||||.+.+.....+..++||.
T Consensus 257 GlTaT~~~~~~~~~~l~g~~Gpv 279 (282)
T d1rifa_ 257 GLSGSLRDGKANIMQYVGMFGEI 279 (282)
T ss_dssp EECSSCCTTSTTHHHHHHHHCEE
T ss_pred EEEeecCCCCcceEEEeeecCCc
Confidence 99999987776666788889975
No 4
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.90 E-value=5.9e-24 Score=195.82 Aligned_cols=160 Identities=32% Similarity=0.455 Sum_probs=133.9
Q ss_pred CcccceeEEEeccCCHHHHHHHHHhhh--------------------------------------hHHHHHHhhhCcchH
Q 010184 212 FIANVQCAEVWCPMTKEFFSEYLKKEN--------------------------------------SKKKQALYVMNPNKF 253 (516)
Q Consensus 212 ~l~~~~~~~v~~~~~~~~~~~~l~~~~--------------------------------------~~~~~~l~~~~~~k~ 253 (516)
+++|+.+..++++++++....|..... ......+....+.|+
T Consensus 2 ~L~py~v~~i~V~Lt~~E~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~K~ 81 (200)
T d2fwra1 2 HLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKI 81 (200)
T ss_dssp CCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHH
T ss_pred cCCCcEEEEEEecCCHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhCcHHHH
Confidence 577888888888888877665431100 011223344556788
Q ss_pred HHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCccccccccc
Q 010184 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA 333 (516)
Q Consensus 254 ~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a 333 (516)
..+..+++.+ ++.|+||||++...++.+++.|++..+||+++..+|.++++.|+++ +++|||+|+++++|+|+|.+
T Consensus 82 ~~l~~ll~~~---~~~k~lvf~~~~~~~~~l~~~l~~~~i~g~~~~~~R~~~l~~F~~~-~~~vLv~~~~~~~Gidl~~~ 157 (200)
T d2fwra1 82 RKLREILERH---RKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTG-RFRAIVSSQVLDEGIDVPDA 157 (200)
T ss_dssp HHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCSHHHHTHHHHHHHS-SCSBCBCSSCCCSSSCSCCB
T ss_pred HHHHHHHHhC---CCCcEEEEeCcHHHHHHHHhhcCcceeeCCCCHHHHHHHHHHhhcC-CeeeeeecchhhcccCCCCC
Confidence 8888888765 4789999999999999999999999999999999999999999997 89999999999999999999
Q ss_pred CEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 334 NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 334 ~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
++||+++++| |+..++||+||++|.|++ +..+++|++++.||
T Consensus 158 ~~vi~~~~~~-s~~~~~Q~iGR~~R~~~~----------k~~~~i~~~v~~~T 199 (200)
T d2fwra1 158 NVGVIMSGSG-SAREYIQRLGRILRPSKG----------KKEAVLYELISRGT 199 (200)
T ss_dssp SEEEEECCSS-CCHHHHHHHHHSBCCCTT----------TCCEEEEEEEECSC
T ss_pred CEEEEeCCCC-CHHHHHHHHHhcCCCCCC----------CcEEEEEEEecCCC
Confidence 9999998886 999999999999999953 34799999999988
No 5
>d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.89 E-value=5.2e-23 Score=193.66 Aligned_cols=165 Identities=19% Similarity=0.269 Sum_probs=123.2
Q ss_pred CCCCCHHHHHHHHHHHhC-CCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCC
Q 010184 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~ 96 (516)
+.+|+|||.+|+++|... ..+.+|||+++||+|||+++++++... ..++|||||.. ++.||.+++.+|+. .
T Consensus 10 ~~~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~~-l~~~W~~e~~~~~~--~ 86 (230)
T d1z63a1 10 KANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLS-VLKNWEEELSKFAP--H 86 (230)
T ss_dssp SSCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECST-THHHHHHHHHHHCT--T
T ss_pred hcchhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecchh-hhhHHHHHHHhhcc--c
Confidence 357999999999987553 233578999999999999999887653 26899999966 69999999999964 3
Q ss_pred CcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch--hHHHHHhhcccceE
Q 010184 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHCK 174 (516)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~--~~~~~l~~~~~~~~ 174 (516)
..+..+..........+.+|+++||+++... ..+...+|++||+||+|++.++ ...+.+..+.+.++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~vvi~~~~~~~~~-----------~~l~~~~~~~vI~DEah~~k~~~s~~~~~~~~l~a~~r 155 (230)
T d1z63a1 87 LRFAVFHEDRSKIKLEDYDIILTTYAVLLRD-----------TRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKELKSKYR 155 (230)
T ss_dssp SCEEECSSSTTSCCGGGSSEEEEEHHHHTTC-----------HHHHTCCEEEEEEETGGGGSCTTSHHHHHHHTSCEEEE
T ss_pred ccceeeccccchhhccCcCEEEeeHHHHHhH-----------HHHhcccceEEEEEhhhcccccchhhhhhhhhhccceE
Confidence 3455555444333345678999999998653 2345679999999999999875 33445666788899
Q ss_pred EEEeccCCCCccch-hhhHhhhCCcccc
Q 010184 175 LGLTATLVREDERI-TDLNFLIGPKLYE 201 (516)
Q Consensus 175 l~LTATp~~~~~~~-~~l~~~~gp~~~~ 201 (516)
++|||||..++... ..+..+++|..+.
T Consensus 156 ~~LTgTPi~n~~~dl~~ll~~l~p~~~~ 183 (230)
T d1z63a1 156 IALTGTPIENKVDDLWSIMTFLNPGLLG 183 (230)
T ss_dssp EEECSSCSTTCHHHHHHHHHHHSTTTTC
T ss_pred EEEecchHHhHHHHHHHHHHhhCCCcCC
Confidence 99999999876442 2455556665543
No 6
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.88 E-value=5.6e-23 Score=201.10 Aligned_cols=163 Identities=15% Similarity=0.236 Sum_probs=117.9
Q ss_pred CCCCHHHHHHHHHHHhC------CCCcccEEEecCCCcHHHHHHHHHHhc----------CCCEEEEEeChhhHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQ 87 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~------~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~e 87 (516)
..|||||.+|+++|+.. ....+|||+++||+|||+++++++..+ .+++|||||.+ |+.||.+|
T Consensus 54 ~~Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s-l~~qW~~E 132 (298)
T d1z3ix2 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS-LVRNWYNE 132 (298)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH-HHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch-hhHHHHHH
Confidence 47999999999988642 223579999999999999999876432 14699999976 79999999
Q ss_pred HHHhhCCCCCcEEEEeCCcccc-------------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccC
Q 010184 88 FKLWSTIQDDQICRFTSDSKER-------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (516)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~-------------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEa 154 (516)
|.+|++... .+..++++.+.. ......|+|+||+.+... .+.+...+|++||+||+
T Consensus 133 i~k~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~sy~~~~~~----------~~~l~~~~~~~vI~DEa 201 (298)
T d1z3ix2 133 VGKWLGGRV-QPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH----------AEVLHKGKVGLVICDEG 201 (298)
T ss_dssp HHHHHGGGC-CEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH----------TTTTTTSCCCEEEETTG
T ss_pred HHhhcCCce-eEEEEeCchHHHHHHHHHHhhhccCccccceEEEEeecccccc----------hhcccccceeeeecccc
Confidence 999976433 333444443221 113467999999988543 34455678999999999
Q ss_pred ccCCch--hHHHHHhhcccceEEEEeccCCCCccch-hhhHhhhCCc
Q 010184 155 HVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPK 198 (516)
Q Consensus 155 H~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~~~gp~ 198 (516)
|++.+. ...+.+..+++.++++|||||.+++-.. ..+..++.|.
T Consensus 202 H~ikn~~s~~~~a~~~l~~~~rllLTGTPi~N~~~dl~~ll~fl~p~ 248 (298)
T d1z3ix2 202 HRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSG 248 (298)
T ss_dssp GGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHH
T ss_pred cccccccchhhhhhhccccceeeeecchHHhhhhHHHHHHHHHhCCC
Confidence 999875 3444566678899999999999876432 2333444443
No 7
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.88 E-value=1.4e-22 Score=186.24 Aligned_cols=153 Identities=27% Similarity=0.289 Sum_probs=114.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
++||+||.++++++.++ ++++++|||+|||++++.++. ..++++||++|+++|+.||.++|.++++.....+
T Consensus 8 ~~pr~~Q~~~~~~~~~~----n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~~~~~~~v 83 (200)
T d1wp9a1 8 IQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKI 83 (200)
T ss_dssp HCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGE
T ss_pred CCCCHHHHHHHHHHhcC----CeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhhcccccce
Confidence 57999999999987543 789999999999998887664 3467899999999999999999999998888888
Q ss_pred EEEeCCccccc----cCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhH-H----HHHhhcc
Q 010184 100 CRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF-R----KVISLTK 170 (516)
Q Consensus 100 ~~~~~~~~~~~----~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~-~----~~l~~~~ 170 (516)
..+.++..... .....|+++|++.+.....+ ..+....+++||+||||++.+... . .......
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~--------~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~~~~~~~~ 155 (200)
T d1wp9a1 84 VALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAK 155 (200)
T ss_dssp EEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCS
T ss_pred eeeecccchhHHHHhhhcccccccccchhHHHHhh--------hhhhccccceEEEEehhhhhcchhHHHHHHHHHhcCC
Confidence 87777644321 23467999999988653221 122236789999999999886522 2 2222334
Q ss_pred cceEEEEeccCCCCccch
Q 010184 171 SHCKLGLTATLVREDERI 188 (516)
Q Consensus 171 ~~~~l~LTATp~~~~~~~ 188 (516)
..+.++|||||.......
T Consensus 156 ~~~~l~~SATp~~~~~~~ 173 (200)
T d1wp9a1 156 NPLVIGLTASPGSTPEKI 173 (200)
T ss_dssp SCCEEEEESCSCSSHHHH
T ss_pred CCcEEEEEecCCCcHHHH
Confidence 456899999997654443
No 8
>d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.84 E-value=2e-20 Score=177.32 Aligned_cols=135 Identities=24% Similarity=0.268 Sum_probs=105.1
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh------CCceEecCCCHHHHHHHHHHHhcCCCccEEEE-eC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSRDLNTIFL-SK 322 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~-t~ 322 (516)
+.|+..+..++.... ..|+|+||||++...++.+...+ .+..+||+++..+|.+++++|++++...++++ +.
T Consensus 68 S~K~~~l~~~l~~~~-~~g~kviIFs~~~~~~~~l~~~l~~~~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~ 146 (244)
T d1z5za1 68 SGKMIRTMEIIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 146 (244)
T ss_dssp CHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred hhHHHHHHHHHHhhc-ccccceEEEeeceehHHHHHHHHHhhccceEEEEecccchhccchhhhhhhccccchhcccccc
Confidence 458888888887665 67999999999999998877655 35679999999999999999999877787766 58
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHH
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (516)
++++|+|++.|++||+++++| |+..+.|++||++|.| |.+++.+|.|++.+|+|+.+......
T Consensus 147 ~~g~Glnl~~a~~vi~~~~~w-n~~~~~Qa~~R~~R~G-----------q~~~v~i~~l~~~~Tiee~i~~~~~~ 209 (244)
T d1z5za1 147 AGGFGINLTSANRVIHFDRWW-NPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQLLAF 209 (244)
T ss_dssp TTCCCCCCTTCSEEEECSCCS-CTTTC-------------------------CCEEEEEEETTSHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhcCchh-hhHHHhhhcceeeecC-----------CCCceEEEEEeeCCCHHHHHHHHHHH
Confidence 999999999999999998887 9999999999999999 78889999999999999977665443
No 9
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]}
Probab=99.84 E-value=4.3e-20 Score=182.92 Aligned_cols=138 Identities=18% Similarity=0.283 Sum_probs=119.2
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---C--CceEecCCCHHHHHHHHHHHhcCC-Ccc-EEEEeC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSR-DLN-TIFLSK 322 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~~l~~F~~~~-~~~-vLv~t~ 322 (516)
++|+.++..++......+|+|+||||+++..++.+...| + +..++|.++..+|.+++++|+++. ... +|++|+
T Consensus 100 S~Kl~~L~~ll~~~~~~~g~KvlIFs~~~~~ld~l~~~l~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~ 179 (346)
T d1z3ix1 100 SGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 179 (346)
T ss_dssp SHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CHHHHHHHHHHHHHHHhcCCceeEEeehhhhhHHHHHHHhhhhccccccccchhHHHHHHHHHhhhcccccceeeeecch
Confidence 568888888887654367899999999999999998888 3 456999999999999999999863 233 556689
Q ss_pred CCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHH
Q 010184 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (516)
Q Consensus 323 ~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (516)
+|+.|+|++.|+.||+++++| ||..+.|++||++|+| |.+.+++|++++.+|+|+.+..+...+.
T Consensus 180 agg~GlnL~~a~~vi~~d~~w-np~~~~Qa~~R~~R~G-----------Q~~~V~v~rli~~~TiEe~i~~~~~~K~ 244 (346)
T d1z3ix1 180 AGGCGLNLIGANRLVMFDPDW-NPANDEQAMARVWRDG-----------QKKTCYIYRLLSTGTIEEKILQRQAHKK 244 (346)
T ss_dssp GSCTTCCCTTEEEEEECSCCS-SHHHHHHHHTTSSSTT-----------CCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred hhhhccccccceEEEEecCCC-ccchHhHhhhcccccC-----------CCCceEEEEEEeCCCHHHHHHHHHHHHH
Confidence 999999999999999999887 9999999999999999 7788999999999999998876655544
No 10
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.83 E-value=2.4e-20 Score=166.75 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=109.2
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
+..|...+..+++.+ ++.|+||||+++..++.++..| .+..+||++++.+|..+++.|+.+ ..++||||++
T Consensus 16 ~~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~g~~~~~~h~~~~~~~r~~~~~~f~~~-~~~ilv~Td~ 91 (171)
T d1s2ma2 16 ERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLVCSDL 91 (171)
T ss_dssp GGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEESSC
T ss_pred HHHHHHHHHHHHHhC---CCCceEEEEeeeehhhHhHHhhhcccccccccccccchhhhhhhhhhcccC-ccccccchhH
Confidence 345777788888654 4789999999999999999999 355799999999999999999998 9999999999
Q ss_pred CcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHH
Q 010184 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (516)
+++|+|+|.+++||+++.|+ |+..|+||+||+||.|. . ..++.+++.+ |......-++.+
T Consensus 92 ~~~Gid~~~v~~VI~~d~p~-~~~~y~qr~GR~gR~g~-----------~--g~~i~~v~~~--e~~~~~~i~~~l 151 (171)
T d1s2ma2 92 LTRGIDIQAVNVVINFDFPK-TAETYLHRIGRSGRFGH-----------L--GLAINLINWN--DRFNLYKIEQEL 151 (171)
T ss_dssp SSSSCCCTTEEEEEESSCCS-SHHHHHHHHCBSSCTTC-----------C--EEEEEEECGG--GHHHHHHHHHHH
T ss_pred hhhccccceeEEEEecCCcc-hHHHHHHHhhhcccCCC-----------c--cEEEEEeCHH--HHHHHHHHHHHH
Confidence 99999999999999998886 99999999999999883 2 3556777764 444444444433
No 11
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.82 E-value=7.6e-20 Score=162.58 Aligned_cols=117 Identities=19% Similarity=0.257 Sum_probs=103.1
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
.|+..+..+++.+. +.++||||++...++.++..| .+..+||++++.+|.++++.|+++ +.++||||++++
T Consensus 20 ~K~~~L~~ll~~~~---~~k~iiF~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~fk~g-~~~iLv~Td~~~ 95 (168)
T d2j0sa2 20 WKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTDVWA 95 (168)
T ss_dssp HHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECGGGS
T ss_pred HHHHHHHHHHHhCC---CCceEEEeeeHHHHHHHHHHhhhcccchhhhhhhhhHHHHHHHHHHHhcC-CccEEeccchhc
Confidence 46777777886654 789999999999999999988 356799999999999999999998 999999999999
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCC
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (516)
+|+|+|++++||+++.|+ |+..|+||+||++|.|. ...+|.+++.+
T Consensus 96 rGiDi~~v~~VIn~d~P~-~~~~yihR~GR~gR~g~-------------~G~~i~~~~~~ 141 (168)
T d2j0sa2 96 RGLDVPQVSLIINYDLPN-NRELYIHRIGRSGRYGR-------------KGVAINFVKND 141 (168)
T ss_dssp SSCCCTTEEEEEESSCCS-SHHHHHHHHTTSSGGGC-------------CEEEEEEEEGG
T ss_pred ccccccCcceEEEecCCc-CHHHHHhhhccccccCC-------------CcEEEEEECHH
Confidence 999999999999998886 99999999999999883 24556777655
No 12
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.81 E-value=5.8e-20 Score=163.48 Aligned_cols=108 Identities=18% Similarity=0.151 Sum_probs=98.1
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~ 323 (516)
+..|+..+..+++.+. +.|+||||+++..++.+++.| .+..+||++++.+|..+++.|+++ ++++||+|++
T Consensus 11 ~~~K~~~L~~ll~~~~---~~k~iIF~~~~~~~~~l~~~L~~~~~~~~~ihg~~~~~~r~~~l~~F~~g-~~~iLv~T~~ 86 (168)
T d1t5ia_ 11 DNEKNRKLFDLLDVLE---FNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNL 86 (168)
T ss_dssp GGGHHHHHHHHHHHSC---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEESSC
T ss_pred hHHHHHHHHHHHHhCC---CCeEEEEEeeeecchhhhhhhccccccccccccccchhhhhhhhhhhccc-cceeeecccc
Confidence 4567788888887764 679999999999999999988 356899999999999999999997 9999999999
Q ss_pred CcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 324 ~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++|+|+|.+++||++++|+ |+..|+||+||++|.|.
T Consensus 87 ~~~Gid~~~~~~vi~~~~p~-~~~~yiqr~GR~gR~g~ 123 (168)
T d1t5ia_ 87 FGRGMDIERVNIAFNYDMPE-DSDTYLHRVARAGRFGT 123 (168)
T ss_dssp CSTTCCGGGCSEEEESSCCS-SHHHHHHHHHHHTGGGC
T ss_pred ccchhhcccchhhhhhhccc-chhhHhhhhhhcccCCC
Confidence 99999999999999998876 99999999999999883
No 13
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.81 E-value=4.3e-20 Score=163.24 Aligned_cols=107 Identities=19% Similarity=0.283 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|++.+..|++.+. +.|+||||+++..++.++..| .+..+||++++.+|.++++.|+.+ +.++||||+++
T Consensus 12 e~K~~~L~~ll~~~~---~~k~iIF~~s~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~l~~f~~~-~~~iLv~Tdv~ 87 (162)
T d1fuka_ 12 EYKYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLL 87 (162)
T ss_dssp GGHHHHHHHHHHHTT---CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGGG
T ss_pred HHHHHHHHHHHHhCC---CCcEEEEEEEEchHHHHHHHHhhcCceEEEeccCCchhhHHHHHHHHhhc-ccceeeccccc
Confidence 347888888887654 789999999999999999998 356799999999999999999998 99999999999
Q ss_pred cccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|++++||+++.|+ |+..|+||+||++|.|.
T Consensus 88 ~rGiDi~~v~~VI~~d~P~-~~~~yihR~GR~gR~g~ 123 (162)
T d1fuka_ 88 ARGIDVQQVSLVINYDLPA-NKENYIHRIGRGGRFGR 123 (162)
T ss_dssp TTTCCCCSCSEEEESSCCS-SGGGGGGSSCSCC----
T ss_pred cccccCCCceEEEEeccch-hHHHHHhhccccccCCC
Confidence 9999999999999998886 99999999999999983
No 14
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.81 E-value=6.4e-20 Score=168.69 Aligned_cols=163 Identities=21% Similarity=0.295 Sum_probs=115.5
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
+|+|||.+++..+++++ ++++++|||+|||.+++.++.. ..+++|+|+|+++|+.||.++|++|++.. ..+..
T Consensus 25 ~l~~~Q~~ai~~l~~~~---~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~~~L~~q~~~~~~~~~~~~-~~v~~ 100 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFSGK---NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKIG-LRIGI 100 (202)
T ss_dssp CCCCCCHHHHHHHTTCS---CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTTT-CCEEE
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCCchhHHHHHHHHHHhhccCcceeecccHHHHHHHHHHHHHHhhcc-cccee
Confidence 69999999999988754 8999999999999998765533 35789999999999999999999986543 45666
Q ss_pred EeCCcccc--ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhhc----cc
Q 010184 102 FTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT----KS 171 (516)
Q Consensus 102 ~~~~~~~~--~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~~----~~ 171 (516)
..++.... ......|+++|+..+....++.. .. ...+++||+||+|++.++. +..++..+ +.
T Consensus 101 ~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~------~~--~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~ 172 (202)
T d2p6ra3 101 STGDYESRDEHLGDCDIIVTTSEKADSLIRNRA------SW--IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (202)
T ss_dssp ECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTC------SG--GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred eccCcccccccccccceeeeccHHHHHHHhccc------hh--hhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCC
Confidence 66553322 23568899999988865432211 11 1457899999999987652 22233222 34
Q ss_pred ceEEEEeccCCCCccchhhhHhhhCCcccccc
Q 010184 172 HCKLGLTATLVREDERITDLNFLIGPKLYEAN 203 (516)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~~~gp~~~~~~ 203 (516)
.++|+||||..+ ..++..+++...|..+
T Consensus 173 ~~~l~lSATl~n----~~~~~~~l~~~~~~s~ 200 (202)
T d2p6ra3 173 LRVIGLSATAPN----VTEIAEWLDADYYVSD 200 (202)
T ss_dssp CEEEEEECCCTT----HHHHHHHTTCEEEECC
T ss_pred CcEEEEcCCCCc----HHHHHHHcCCCeeeCC
Confidence 578999999643 2335566676665543
No 15
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.81 E-value=1.3e-19 Score=159.24 Aligned_cols=106 Identities=24% Similarity=0.313 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
..|+..+..+++ ..+.++||||+++..++.++..| .+..+||++++.+|..+++.|+++ +.++||||+++
T Consensus 14 ~~K~~~L~~ll~----~~~~k~IIF~~s~~~~~~l~~~L~~~g~~~~~~~~~~~~~~r~~~~~~f~~~-~~~ilv~T~~~ 88 (155)
T d1hv8a2 14 NERFEALCRLLK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVM 88 (155)
T ss_dssp GGHHHHHHHHHC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEECTTH
T ss_pred HHHHHHHHHHHc----cCCCCEEEEECchHHHHHHHhhhcccccccccccccchhhhhhhhhhhhhcc-cceeeeehhHH
Confidence 346666666664 34568999999999999999999 355799999999999999999998 99999999999
Q ss_pred cccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|+|+|.+++||+++.|+ |+..|+||+||++|.|.
T Consensus 89 ~~Gid~~~v~~Vi~~d~p~-~~~~y~qr~GR~gR~g~ 124 (155)
T d1hv8a2 89 SRGIDVNDLNCVINYHLPQ-NPESYMHRIGRTGRAGK 124 (155)
T ss_dssp HHHCCCSCCSEEEESSCCS-CHHHHHHHSTTTCCSSS
T ss_pred hhhhhhccCcEEEEecCCC-CHHHHHHHHHhcCcCCC
Confidence 9999999999999998886 99999999999999984
No 16
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.78 E-value=6.9e-19 Score=151.01 Aligned_cols=122 Identities=16% Similarity=0.115 Sum_probs=92.1
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~ 123 (516)
+.++|.+|||+|||+++..++...+.++||++|+++|++||.+.+.++++... ....++... .....++++|++.
T Consensus 9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P~~~l~~q~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~ 83 (136)
T d1a1va1 9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDP---NIRTGVRTI--TTGSPITYSTYGK 83 (136)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHHSCCC---EEECSSCEE--CCCCSEEEEEHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcChHHHHHHHHHHHHHHhhccc---ccccccccc--ccccceEEEeeee
Confidence 58899999999999999888888899999999999999999999999876432 222333221 2345688888887
Q ss_pred hhccCCCChhHHHHHHHHccCCccEEEEccCccCCch---hHHHHHhhcc---cceEEEEeccC
Q 010184 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTK---SHCKLGLTATL 181 (516)
Q Consensus 124 l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~---~~~~~l~~~~---~~~~l~LTATp 181 (516)
+..... ..+ .+|++||+||+|++.+. .+..++..+. ....|+|||||
T Consensus 84 ~~~~~~---------~~~--~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TATP 136 (136)
T d1a1va1 84 FLADGG---------CSG--GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATATP 136 (136)
T ss_dssp HHHTTG---------GGG--CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSC
T ss_pred eccccc---------hhh--hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCCC
Confidence 654321 122 67999999999999876 3555555443 33689999998
No 17
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.78 E-value=9.9e-19 Score=155.33 Aligned_cols=118 Identities=14% Similarity=0.250 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcc
Q 010184 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (516)
Q Consensus 252 k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~ 326 (516)
|+..+..+++. ....++||||+++..++.++..|. +..+||++++.+|.+++++|+++ ..++||||+++++
T Consensus 19 K~~~L~~ll~~---~~~~~~lIF~~~~~~~~~l~~~l~~~~~~~~~~hg~~~~~~R~~~~~~F~~g-~~~ilv~Td~~~~ 94 (168)
T d2rb4a1 19 KYQALCNIYGS---ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVCAR 94 (168)
T ss_dssp HHHHHHHHHTT---SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSCCT
T ss_pred HHHHHHHHHHh---CCCCcEEEEcCHHHHHHHHHHHHHhcCCcceecccchhhHHHHHHhhhhcCC-ceeeeechhhhhh
Confidence 55566666644 347899999999999999999883 55799999999999999999998 9999999999999
Q ss_pred cccccccCEEEEecCCCC-----CHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCc
Q 010184 327 SIDIPEANVIIQISSHAG-----SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (516)
Q Consensus 327 GlDlp~a~~vI~~~~~~~-----s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (516)
|+|+|++++||+++.|+. +...|+||+||++|.|. .+..|.+++.+.
T Consensus 95 Gid~~~v~~Vi~yd~P~~~~~~~~~~~yihR~GR~gR~g~-------------~g~~i~~~~~~d 146 (168)
T d2rb4a1 95 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK-------------KGLAFNMIEVDE 146 (168)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C-------------CEEEEEEECGGG
T ss_pred hhccccccEEEeecCCCcccccCCHHHHHHHhhhcccCCC-------------ceEEEEEEcHHH
Confidence 999999999999987752 57889999999999883 345677887663
No 18
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.78 E-value=9.5e-19 Score=159.66 Aligned_cols=106 Identities=14% Similarity=0.184 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
+|+..+..++..+ ++.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ ++++||+|++++
T Consensus 16 ~k~~~L~~~l~~~---~~~~~IIF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~ilvaTd~~~ 91 (200)
T d1oywa3 16 KPLDQLMRYVQEQ---RGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQIVVATVAFG 91 (200)
T ss_dssp SHHHHHHHHHHHT---TTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECTTSC
T ss_pred cHHHHHHHHHHhc---CCCCEEEEEeeehhhHHhhhhhccCCceeEEecCCCcHHHHHHHHHHHhcc-cceEEEecchhh
Confidence 4555555555444 4789999999999999999988 356799999999999999999998 999999999999
Q ss_pred ccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 326 ~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|||+|++++||+++.|+ |+..|+||+||++|.|.
T Consensus 92 ~GiD~p~v~~VI~~~~P~-~~~~y~qr~GR~gR~g~ 126 (200)
T d1oywa3 92 MGINKPNVRFVVHFDIPR-NIESYYQETGRAGRDGL 126 (200)
T ss_dssp TTTCCTTCCEEEESSCCS-SHHHHHHHHTTSCTTSS
T ss_pred hccCCCCCCEEEECCCcc-chHHHHHHhhhhhcCCC
Confidence 999999999999998875 99999999999999884
No 19
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=99.77 E-value=6.8e-19 Score=155.23 Aligned_cols=94 Identities=18% Similarity=0.297 Sum_probs=86.4
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
.+|.++||||+++.+++.++..| .+..+||++++.+|.+++++|+++ ++.|||+|.++++|||+|++++||+++
T Consensus 29 ~~g~r~lvfc~t~~~~~~l~~~L~~~Gi~a~~~Hg~~~~~eR~~~l~~F~~G-~~~vLVaT~v~~~GiDip~V~~Vi~~~ 107 (174)
T d1c4oa2 29 ARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIPEVSLVAILD 107 (174)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred hcCCcEEEEEcchhHHHHHHHHHHhcCCceEEEecccchHHHHHHHHHHHCC-CeEEEEeeeeeeeeccCCCCcEEEEec
Confidence 46899999999999999999999 356899999999999999999998 999999999999999999999999997
Q ss_pred CCC----CCHHHHHHHhhcccccC
Q 010184 341 SHA----GSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~~~----~s~~~~~Qr~GR~~R~g 360 (516)
++. .|..+|+|++||++|.+
T Consensus 108 ~~~~~~~~~~~~~iq~~GR~gR~~ 131 (174)
T d1c4oa2 108 ADKEGFLRSERSLIQTIGRAARNA 131 (174)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTST
T ss_pred cccccccchhHHHHHHhhhhhhcC
Confidence 542 25688999999999988
No 20
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=99.77 E-value=1.4e-18 Score=155.59 Aligned_cols=94 Identities=17% Similarity=0.291 Sum_probs=86.9
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-----CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEec
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~ 340 (516)
..+.++||||+++..++.++..| .+.++||++++.+|.+++++|+++ +++|||||+++++|||+|++++||+++
T Consensus 29 ~~~~~~iif~~~~~~~~~~~~~l~~~g~~~~~~hg~~~~~eR~~~l~~Fr~g-~~~vLVaTdv~~rGiDip~v~~VI~~d 107 (181)
T d1t5la2 29 ERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIPEVSLVAILD 107 (181)
T ss_dssp HTTCEEEEECSSHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHHT-SCSEEEESCCCSSSCCCTTEEEEEETT
T ss_pred hcCCeEEEEeehhhhhHHHHHHHHhCCcceeEecCCccHHHHHHHHHHHHCC-CCCEEEehhHHHccCCCCCCCEEEEec
Confidence 35779999999999999999999 356899999999999999999998 999999999999999999999999998
Q ss_pred CCC----CCHHHHHHHhhcccccC
Q 010184 341 SHA----GSRRQEAQRLGRILRAK 360 (516)
Q Consensus 341 ~~~----~s~~~~~Qr~GR~~R~g 360 (516)
.|. .|..+|+||+||++|.|
T Consensus 108 ~p~~~~~~s~~~yi~R~GRagR~g 131 (181)
T d1t5la2 108 ADKEGFLRSERSLIQTIGRAARNA 131 (181)
T ss_dssp TTSCSGGGSHHHHHHHHGGGTTST
T ss_pred CCcccccccHHHHHHHHHhhcccc
Confidence 773 37899999999999988
No 21
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=99.76 E-value=1.6e-19 Score=166.42 Aligned_cols=145 Identities=18% Similarity=0.185 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEe
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~ 103 (516)
.++||||.++++.++.+. ++++++|||+|||+++..++....+++++++|+++|+.|+.++|+.+... .....
T Consensus 24 ~~~rp~Q~~ai~~~l~g~---~vlv~apTGsGKT~~~~~~~~~~~~~~~~v~P~~~L~~q~~~~l~~~~~~----~~~~~ 96 (206)
T d1oywa2 24 QQFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQANGVA----AACLN 96 (206)
T ss_dssp SSCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHTTCC----EEEEC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCCCcchhhhhhhhccCceEEeccchhhhhhHHHHHHhhccc----ccccc
Confidence 489999999999988764 99999999999999999999888999999999999999999999987432 22222
Q ss_pred CCcc---------ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch------hH---HHH
Q 010184 104 SDSK---------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MF---RKV 165 (516)
Q Consensus 104 ~~~~---------~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~------~~---~~~ 165 (516)
.... ....+...|+++|+..+.... .........++++|+||+|++... .+ ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~--------~~~~~~~~~v~~lviDEaH~~~~~~~~~~~~~~~~~~l 168 (206)
T d1oywa2 97 STQTREQQLEVMTGCRTGQIRLLYIAPERLMLDN--------FLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168 (206)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTT--------HHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGH
T ss_pred cccccccchhHHHHHhcCCceEEEEechhhhchh--------hcccchhheeeeeeeeeeeeeeccccchHHHHHHHHHH
Confidence 2111 012356889999998775532 123344567899999999988643 11 233
Q ss_pred HhhcccceEEEEeccCCC
Q 010184 166 ISLTKSHCKLGLTATLVR 183 (516)
Q Consensus 166 l~~~~~~~~l~LTATp~~ 183 (516)
...++..++++||||+..
T Consensus 169 ~~~~~~~~ii~lSATl~~ 186 (206)
T d1oywa2 169 RQRFPTLPFMALTATADD 186 (206)
T ss_dssp HHHCTTSCEEEEESCCCH
T ss_pred HHhCCCCceEEEEeCCCH
Confidence 444556679999999853
No 22
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Probab=99.76 E-value=1e-18 Score=169.47 Aligned_cols=126 Identities=24% Similarity=0.342 Sum_probs=104.0
Q ss_pred cchHHHHHHHHHH-HhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEec--------CCCHHHHHHHHHHHhcCCCc
Q 010184 250 PNKFRACEFLIRF-HEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYG--------ATSHVERTKILQAFKCSRDL 315 (516)
Q Consensus 250 ~~k~~~~~~ll~~-~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g--------~~~~~eR~~~l~~F~~~~~~ 315 (516)
..|+..+..++.. ....++.++||||+++..++.+++.|. +..++| +++..+|.++++.|+++ ++
T Consensus 142 ~pK~~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g-~~ 220 (286)
T d1wp9a2 142 HPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKENDRGLSQREQKLILDEFARG-EF 220 (286)
T ss_dssp CHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC-------CCHHHHHHHHHHHT-SC
T ss_pred CcHHHHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHcCCceEEeeccccccccchhchHHHHHHHHHHHcC-CC
Confidence 3577777777743 233668899999999999999999982 234544 45666899999999998 89
Q ss_pred cEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhH
Q 010184 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (516)
Q Consensus 316 ~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (516)
+|||+|+++++|||+|++++||++++|| |+..|+||+||++|.+ .+.+|.|++.+|.|+.+
T Consensus 221 ~vLv~T~~~~~Gld~~~~~~Vi~~d~~~-~~~~~~Qr~GR~gR~~--------------~~~~~~l~~~~~~ee~~ 281 (286)
T d1wp9a2 221 NVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHM--------------PGRVIILMAKGTRDEAY 281 (286)
T ss_dssp SEEEECGGGGGGGGSTTCCEEEESSCCH-HHHHHHHHHTTSCSCC--------------CSEEEEEEETTSHHHHH
T ss_pred cEEEEccceeccccCCCCCEEEEeCCCC-CHHHHHHHHHhCCCCC--------------CCEEEEEEeCCCHHHHH
Confidence 9999999999999999999999999887 9999999999999977 24578999999999844
No 23
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.76 E-value=7.9e-19 Score=165.45 Aligned_cols=147 Identities=20% Similarity=0.245 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCc--
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ-- 98 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~-- 98 (516)
.+|+|+|++++..++.+. ++++++|||+|||++++.++.. .++++|||+|+++|+.||.++|++|+...+..
T Consensus 42 ~~p~~~Q~~~i~~~l~g~---~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~ 118 (237)
T d1gkub1 42 GEPRAIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTE 118 (237)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGG
T ss_pred CCCCHHHHHHHHHHHCCC---CEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceE
Confidence 479999999999988764 9999999999999988776643 35789999999999999999999886433222
Q ss_pred --EEEEeCCcccc-------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc--hhHHHHHh
Q 010184 99 --ICRFTSDSKER-------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVIS 167 (516)
Q Consensus 99 --v~~~~~~~~~~-------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~--~~~~~~l~ 167 (516)
+..+.+..... .....+|+|+|++++.... .. ..++++||+||+|.+.. ....+.+.
T Consensus 119 ~~~~~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~~~----------~~--~~~~~~vVvDE~d~~l~~~~~~~~~~~ 186 (237)
T d1gkub1 119 NLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHY----------RE--LGHFDFIFVDDVDAILKASKNVDKLLH 186 (237)
T ss_dssp GSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCS----------TT--SCCCSEEEESCHHHHHTSTHHHHHHHH
T ss_pred EEEeeeecccchhhhhhhhccccccceeccChHHHHHhh----------hh--cCCCCEEEEEChhhhhhcccchhHHHH
Confidence 23333332211 1234789999999885432 11 25789999999998743 23333333
Q ss_pred hcc--------------cceEEEEeccCCCCc
Q 010184 168 LTK--------------SHCKLGLTATLVRED 185 (516)
Q Consensus 168 ~~~--------------~~~~l~LTATp~~~~ 185 (516)
.+. ....+++|||+.+..
T Consensus 187 ~~g~~~~~~~~~~~~~~~~~~i~~SAT~~~~~ 218 (237)
T d1gkub1 187 LLGFHYDLKTKSWVGEARGCLMVSTATAKKGK 218 (237)
T ss_dssp HTTEEEETTTTEEEECCSSEEEECCCCSCCCT
T ss_pred hcCChHHHHHHHhhCCCCCeEEEEeCCCCccc
Confidence 321 124688999986543
No 24
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.73 E-value=6e-18 Score=159.68 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=114.1
Q ss_pred CCCCCCHHHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCCC
Q 010184 22 PHAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (516)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~ 95 (516)
..++|.+-|.+|++.+.. .+.+-..+|.+.||||||.+++.++.. .++.+++++|+..|+.|+.+.|.+++.-.
T Consensus 80 LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~ 159 (264)
T d1gm5a3 80 LPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKF 159 (264)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCS
T ss_pred ccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHHHHHHHHhhhhc
Confidence 446899999999998754 344457899999999999999987744 47899999999999999999999998766
Q ss_pred CCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHH
Q 010184 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (516)
Q Consensus 96 ~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l 166 (516)
+..+..++|+...+ ..|+.+|+|+|...+.. .+.-.+.|+||+||-|+.+-..-..+.
T Consensus 160 ~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~-------------~~~f~~LglviiDEqH~fgv~Qr~~l~ 226 (264)
T d1gm5a3 160 NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-------------DVHFKNLGLVIIDEQHRFGVKQREALM 226 (264)
T ss_dssp SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-------------CCCCSCCCEEEEESCCCC-----CCCC
T ss_pred cccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcC-------------CCCccccceeeeccccccchhhHHHHH
Confidence 67888988875432 14789999999987733 222357899999999999865443333
Q ss_pred hhcccceEEEEeccCCCC
Q 010184 167 SLTKSHCKLGLTATLVRE 184 (516)
Q Consensus 167 ~~~~~~~~l~LTATp~~~ 184 (516)
..-.....|.+||||..+
T Consensus 227 ~~~~~~~~l~~SATPipr 244 (264)
T d1gm5a3 227 NKGKMVDTLVMSATPIPR 244 (264)
T ss_dssp SSSSCCCEEEEESSCCCH
T ss_pred HhCcCCCEEEEECCCCHH
Confidence 333345789999999853
No 25
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.72 E-value=2.3e-17 Score=152.73 Aligned_cols=151 Identities=18% Similarity=0.200 Sum_probs=119.2
Q ss_pred CCCCCCCHHHHHHHHHHHh---CCCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHHHHhhCC
Q 010184 21 KPHAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~ 94 (516)
...+.|.+-|..++..+.. .+.+-..+|+++||+|||.+++.++.. .++.+++++|+..|+.|+.+.|+++++.
T Consensus 51 ~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~ 130 (233)
T d2eyqa3 51 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 130 (233)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred ccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHHHHHhh
Confidence 4567899999999988754 344457799999999999999987754 4789999999999999999999998877
Q ss_pred CCCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHH
Q 010184 95 QDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~ 165 (516)
-+..|..+++..... ..+..+|+|.|...+.. .+.-.++++||+||-|+.....-..+
T Consensus 131 ~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~-------------~~~f~~LgLiIiDEeH~fg~kQ~~~l 197 (233)
T d2eyqa3 131 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS-------------DVKFKDLGLLIVDEEHRFGVRHKERI 197 (233)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS-------------CCCCSSEEEEEEESGGGSCHHHHHHH
T ss_pred CCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhcc-------------CCccccccceeeechhhhhhHHHHHH
Confidence 677899988865422 24778999999976633 22236789999999999987755544
Q ss_pred HhhcccceEEEEeccCCCC
Q 010184 166 ISLTKSHCKLGLTATLVRE 184 (516)
Q Consensus 166 l~~~~~~~~l~LTATp~~~ 184 (516)
.........|.+||||..+
T Consensus 198 ~~~~~~~~~l~~SATPipr 216 (233)
T d2eyqa3 198 KAMRANVDILTLTATPIPR 216 (233)
T ss_dssp HHHHTTSEEEEEESSCCCH
T ss_pred HhhCCCCCEEEEecchhHH
Confidence 4444455789999999853
No 26
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72 E-value=1.1e-17 Score=155.17 Aligned_cols=149 Identities=17% Similarity=0.143 Sum_probs=114.1
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|.|.|.+++..++.+. +.++.+|||+|||++++.++... .-.++|++|+++|+.|..+.+.++......
T Consensus 38 ~~pt~IQ~~aIp~il~g~---dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i 114 (222)
T d2j0sa1 38 EKPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNV 114 (222)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCHHHHHHHHHHHCCC---CeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHHHHHhCccce
Confidence 479999999999988764 99999999999999999887542 236999999999999999999998777777
Q ss_pred cEEEEeCCcccc-----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----HHhh
Q 010184 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISL 168 (516)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~~ 168 (516)
.+..+.|+.... +....+|+|+||+.+.....+ ..+.-....++|+||||++.+..|.. ++..
T Consensus 115 ~~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~--------~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~ 186 (222)
T d2j0sa1 115 QCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRY 186 (222)
T ss_dssp CEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTT
T ss_pred eEEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc--------cccccccceeeeecchhHhhhcCcHHHHHHHHHh
Confidence 787777765421 234689999999988653211 11222556799999999998865544 4444
Q ss_pred cc-cceEEEEeccCCC
Q 010184 169 TK-SHCKLGLTATLVR 183 (516)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (516)
++ .++.+++|||...
T Consensus 187 l~~~~Q~ilfSAT~~~ 202 (222)
T d2j0sa1 187 LPPATQVVLISATLPH 202 (222)
T ss_dssp SCTTCEEEEEESCCCH
T ss_pred CCCCCEEEEEEEeCCH
Confidence 43 3568999999853
No 27
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=99.72 E-value=7.7e-18 Score=144.33 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=83.7
Q ss_pred cccEEEecCCCcHHHHHHHHH----HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~ 119 (516)
++++|.+|||+|||++++.++ ...+..+++++|++.++.||.+.+..+ .+................+.+.
T Consensus 8 ~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T d1yksa1 8 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFSAHGSGREVIDAM 81 (140)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCCCCCCSSCCEEEE
T ss_pred CcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHhhhh------hhhhcccccccccccccchhhh
Confidence 589999999999998887554 234678999999999999988776543 2222222222222334567777
Q ss_pred chhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh-----HHHHHhhcccceEEEEeccCC
Q 010184 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-----FRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~-----~~~~l~~~~~~~~l~LTATp~ 182 (516)
|+..+... ........+|++||+||||++.... +...+...+..++|+|||||+
T Consensus 82 ~~~~l~~~---------~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~l~lTATPp 140 (140)
T d1yksa1 82 CHATLTYR---------MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPP 140 (140)
T ss_dssp EHHHHHHH---------HTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCT
T ss_pred hHHHHHHH---------HhccccccceeEEEEccccccChhhHHHHHHHHHHhhCCCCCEEEEEcCCC
Confidence 77766432 2223334789999999999986542 222333345678999999995
No 28
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=99.70 E-value=2.1e-17 Score=152.18 Aligned_cols=148 Identities=15% Similarity=0.104 Sum_probs=112.6
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v 99 (516)
+|.|.|.++++.+++++ .+.++.+|||+|||++++.++... +..+||+||+++|+.|+.+.+..+.......+
T Consensus 26 ~pt~iQ~~~ip~~l~g~--~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v 103 (208)
T d1hv8a1 26 KPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKI 103 (208)
T ss_dssp SCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCE
T ss_pred CCCHHHHHHHHHHHcCC--CCeeeechhcccccceeecccccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEE
Confidence 69999999999988764 378888999999999998877543 24799999999999999999999887777788
Q ss_pred EEEeCCcccc----ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHhhcc-
Q 010184 100 CRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK- 170 (516)
Q Consensus 100 ~~~~~~~~~~----~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~- 170 (516)
..+.|+.... ....++|+|+||+.+....++. .+.-.+..++|+||||++... ...+++..++
T Consensus 104 ~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~--------~~~~~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~ 175 (208)
T d1hv8a1 104 AKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG--------TLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNK 175 (208)
T ss_dssp EEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT--------CSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCS
T ss_pred EEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcC--------CCCcccCcEEEEEChHHhhcCCChHHHHHHHHhCCC
Confidence 8887764321 1135789999999875532211 122366789999999987544 4555666664
Q ss_pred cceEEEEeccCC
Q 010184 171 SHCKLGLTATLV 182 (516)
Q Consensus 171 ~~~~l~LTATp~ 182 (516)
..+++++|||..
T Consensus 176 ~~Q~i~~SAT~~ 187 (208)
T d1hv8a1 176 DKRILLFSATMP 187 (208)
T ss_dssp SCEEEEECSSCC
T ss_pred CCeEEEEEccCC
Confidence 457899999985
No 29
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=4.4e-17 Score=150.93 Aligned_cols=149 Identities=13% Similarity=0.061 Sum_probs=112.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|.|.|..|+..++.+. +.++.+|||+|||++++.++... ..++||++|+++|+.|..+++..+......
T Consensus 33 ~~pt~iQ~~aip~il~g~---dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~~~~~~ 109 (218)
T d2g9na1 33 EKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 109 (218)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHHTTTTC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhccccce
Confidence 369999999999998775 89999999999999999877432 246999999999999999999998776666
Q ss_pred cEEEEeCCccc------cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch----hHHHHHh
Q 010184 98 QICRFTSDSKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVIS 167 (516)
Q Consensus 98 ~v~~~~~~~~~------~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~ 167 (516)
.+....++... ...+.++|+|+||+.+.....+. .+......++|+||||++.+. ....++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~--------~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~ 181 (218)
T d2g9na1 110 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR--------YLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 181 (218)
T ss_dssp CEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTT--------SSCSTTCCEEEEESHHHHHHTTCHHHHHHHHH
T ss_pred eEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcC--------CcccccceEEEeeecchhhcCchHHHHHHHHH
Confidence 66655553221 12356899999999886543221 122356789999999998865 3445556
Q ss_pred hccc-ceEEEEeccCCC
Q 010184 168 LTKS-HCKLGLTATLVR 183 (516)
Q Consensus 168 ~~~~-~~~l~LTATp~~ 183 (516)
.++. .+++++|||...
T Consensus 182 ~~~~~~Q~il~SAT~~~ 198 (218)
T d2g9na1 182 KLNSNTQVVLLSATMPS 198 (218)
T ss_dssp HSCTTCEEEEEESCCCH
T ss_pred hCCCCCeEEEEEecCCH
Confidence 6543 578899999964
No 30
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.69 E-value=8.9e-17 Score=147.64 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c-----CCCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
..|+|.|.+++..++++. +.++.+|||+|||++++.++.. . +..+||++|+++|+.|..+.+..+... ..
T Consensus 24 ~~pt~iQ~~aip~il~g~---dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 100 (206)
T d1veca_ 24 EKPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCCHHHHHHHHHHHcCC---CEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccC
Confidence 379999999999988764 9999999999999999987743 2 246999999999999999999887543 23
Q ss_pred CcEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHH----HHHh
Q 010184 97 DQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVIS 167 (516)
Q Consensus 97 ~~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~----~~l~ 167 (516)
..+....|+.. ..+...++|+|+||+.+.....+ ..+......++|+||||.+.+..|. .++.
T Consensus 101 ~~~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~~~--------~~~~~~~l~~lVlDEaD~ll~~~f~~~i~~I~~ 172 (206)
T d1veca_ 101 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKK--------GVAKVDHVQMIVLDEADKLLSQDFVQIMEDIIL 172 (206)
T ss_dssp CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred cccccccCCccHHHHHHHHHhccCeEEeCCccccccccc--------hhccccccceEEEeccccccccchHHHHHHHHH
Confidence 34555555432 12346789999999988653221 1122356789999999999876444 4555
Q ss_pred hcc-cceEEEEeccCC
Q 010184 168 LTK-SHCKLGLTATLV 182 (516)
Q Consensus 168 ~~~-~~~~l~LTATp~ 182 (516)
.++ .++++++|||..
T Consensus 173 ~~~~~~Q~~l~SAT~~ 188 (206)
T d1veca_ 173 TLPKNRQILLYSATFP 188 (206)
T ss_dssp HSCTTCEEEEEESCCC
T ss_pred hCCCCCEEEEEEecCC
Confidence 553 457899999985
No 31
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=1.7e-16 Score=145.84 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=110.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCC-CC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~-~~ 96 (516)
.+|+|.|.+++..++++. +.++.+|||+|||++++.++... +.+++|++|+++|+.|..+.+..+... +.
T Consensus 22 ~~pt~iQ~~aip~il~g~---dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~~~~~~~~ 98 (207)
T d1t6na_ 22 EHPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 98 (207)
T ss_dssp CCCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHcCC---CeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHHHHhhCCC
Confidence 479999999999998764 99999999999999999887443 236999999999999999999987644 33
Q ss_pred CcEEEEeCCcccc------ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCch-hHH----HH
Q 010184 97 DQICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR----KV 165 (516)
Q Consensus 97 ~~v~~~~~~~~~~------~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~-~~~----~~ 165 (516)
..+....|+.... ....++|+|+||+.+....++ ..+.-....++|+||||++... .|. .+
T Consensus 99 ~~~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~~~--------~~~~l~~l~~lVlDEaD~ll~~~~~~~~i~~I 170 (207)
T d1t6na_ 99 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEI 170 (207)
T ss_dssp CCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHH
T ss_pred ceeEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhccC--------CceeccccceeehhhhhhhhhcCCcHHHHHHH
Confidence 4556666654321 135689999999988654321 1122356679999999988764 443 34
Q ss_pred Hhhcc-cceEEEEeccCCC
Q 010184 166 ISLTK-SHCKLGLTATLVR 183 (516)
Q Consensus 166 l~~~~-~~~~l~LTATp~~ 183 (516)
++.++ .++++++|||...
T Consensus 171 ~~~~~~~~Q~il~SAT~~~ 189 (207)
T d1t6na_ 171 FRMTPHEKQVMMFSATLSK 189 (207)
T ss_dssp HHTSCSSSEEEEEESCCCT
T ss_pred HHhCCCCCEEEEEeeeCCH
Confidence 45553 4567888999864
No 32
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Probab=99.66 E-value=3.3e-16 Score=146.96 Aligned_cols=149 Identities=16% Similarity=0.177 Sum_probs=112.4
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c--------------CCCEEEEEeChhhHHHHHHHH
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--------------KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~--------------~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..+.|.|.+++..++++. +.++.+|||+|||++++.++.. + .-.+||++|+++|+.|+.+++
T Consensus 42 ~~pt~iQ~~~ip~il~g~---dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~ 118 (238)
T d1wrba1 42 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 118 (238)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHhhhhhCCC---CEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchheee
Confidence 479999999999988764 9999999999999999887632 1 135999999999999999999
Q ss_pred HHhhCCCCCcEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh--
Q 010184 89 KLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-- 161 (516)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~-- 161 (516)
..+....+..+..+.|+.. +.....++|+|+||+.+....+. ..+.-..+.++|+||||++....
T Consensus 119 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~--------~~~~l~~v~~lViDEaD~ll~~~f~ 190 (238)
T d1wrba1 119 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEK--------NKISLEFCKYIVLDEADRMLDMGFE 190 (238)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHT--------TSBCCTTCCEEEEETHHHHHHTTCH
T ss_pred eecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHcc--------CceeccccceeeeehhhhhhhhccH
Confidence 9887666677777776643 22345689999999988654221 11223567899999999987553
Q ss_pred --HHHHHhhcc-----cceEEEEeccCCC
Q 010184 162 --FRKVISLTK-----SHCKLGLTATLVR 183 (516)
Q Consensus 162 --~~~~l~~~~-----~~~~l~LTATp~~ 183 (516)
...+++.+. .++++++|||..+
T Consensus 191 ~~i~~Il~~~~~~~~~~~Q~il~SAT~~~ 219 (238)
T d1wrba1 191 PQIRKIIEESNMPSGINRQTLMFSATFPK 219 (238)
T ss_dssp HHHHHHHHSSCCCCGGGCEEEEEESSCCH
T ss_pred HHHHHHHHHhcCCCCCCCEEEEEeeeCCH
Confidence 344555432 3478999999753
No 33
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.64 E-value=4.3e-16 Score=143.57 Aligned_cols=149 Identities=17% Similarity=0.126 Sum_probs=108.0
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh-c-----CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
..|+|.|.+++..++.+. +.++.+|||+|||++++.++.. + +-.++|++|+++|+.|....+..+......
T Consensus 31 ~~pt~iQ~~aip~il~g~---dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~ 107 (212)
T d1qdea_ 31 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 107 (212)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccccccccc
Confidence 479999999999998875 9999999999999999887633 2 246999999999999999999877554444
Q ss_pred cEEEEeCCccc----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHHHhhc
Q 010184 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT 169 (516)
Q Consensus 98 ~v~~~~~~~~~----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~l~~~ 169 (516)
.+....++... .....++|+|+||+.+...... ..+.-....++|+||||.+.+.. ...+++.+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~--------~~~~l~~l~~lVlDEad~lld~~f~~~v~~I~~~~ 179 (212)
T d1qdea_ 108 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 179 (212)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred ceeeEeeccchhHHHHHhcCCcEEEECCCcccccccc--------CceecCcceEEeehhhhhhcccchHHHHHHHHHhC
Confidence 55554443211 1123579999999988664221 11223567899999999988653 34455555
Q ss_pred c-cceEEEEeccCCC
Q 010184 170 K-SHCKLGLTATLVR 183 (516)
Q Consensus 170 ~-~~~~l~LTATp~~ 183 (516)
+ ..+.+++|||...
T Consensus 180 ~~~~Q~vl~SAT~~~ 194 (212)
T d1qdea_ 180 PPTTQVVLLSATMPN 194 (212)
T ss_dssp CTTCEEEEEESSCCH
T ss_pred CCCCeEEEEEeeCCH
Confidence 4 4578999999853
No 34
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.60 E-value=2.1e-15 Score=137.53 Aligned_cols=107 Identities=16% Similarity=0.191 Sum_probs=87.7
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-----------------------------------CCceEecCCCHHHHHHHHHHHh
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-----------------------------------RKPMIYGATSHVERTKILQAFK 310 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-----------------------------------~~~~i~g~~~~~eR~~~l~~F~ 310 (516)
..+..+||||+++..++.+|..| ++.++||++++.+|..+.+.|+
T Consensus 38 ~~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~ 117 (201)
T d2p6ra4 38 AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFR 117 (201)
T ss_dssp HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHH
T ss_pred HcCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHh
Confidence 35778999999998887777655 2678999999999999999999
Q ss_pred cCCCccEEEEeCCCcccccccccCEEEE-------ecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEc
Q 010184 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQ-------ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383 (516)
Q Consensus 311 ~~~~~~vLv~t~~~~~GlDlp~a~~vI~-------~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~ 383 (516)
++ .+++||||+++++|+|+|..++||. ...+ .+..+|.|++||+||.| .+....+|.+..
T Consensus 118 ~g-~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~~~-~~~~~~~q~~GRAGR~g-----------~~~~G~~~l~~~ 184 (201)
T d2p6ra4 118 RG-NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKR-IKVSEYKQMAGRAGRPG-----------MDERGEAIIIVG 184 (201)
T ss_dssp TT-SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEE-CCHHHHHHHHTTBSCTT-----------TCSCEEEEEECC
T ss_pred CC-CceEEEechHHHhhcCCCCceEEEecceeccCCcCC-CCHHHHHHHhcccCCCC-----------CCCeeEEEEEeC
Confidence 98 9999999999999999998888885 2222 38999999999999999 334455565555
Q ss_pred CC
Q 010184 384 TD 385 (516)
Q Consensus 384 ~~ 385 (516)
..
T Consensus 185 ~~ 186 (201)
T d2p6ra4 185 KR 186 (201)
T ss_dssp GG
T ss_pred CC
Confidence 44
No 35
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.58 E-value=6.8e-15 Score=134.93 Aligned_cols=148 Identities=18% Similarity=0.159 Sum_probs=113.7
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCCCC
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~ 97 (516)
.+|+|.|.+++..++.+. +.++.+|||+|||++++.++... +..+++++|+..++.|-...+..+......
T Consensus 22 ~~pt~iQ~~aip~il~g~---dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (206)
T d1s2ma1 22 EKPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGI 98 (206)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhhcccccCe
Confidence 479999999999998875 89999999999999998766432 246999999999999988888887777777
Q ss_pred cEEEEeCCccc-----cccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH----HHhh
Q 010184 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISL 168 (516)
Q Consensus 98 ~v~~~~~~~~~-----~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~----~l~~ 168 (516)
.+....|+... .+...++|+|+||+.+....+. ..+.-.+..++|+||||++.+..|.. +++.
T Consensus 99 ~~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~--------~~~~l~~l~~lV~DEaD~l~~~~f~~~v~~I~~~ 170 (206)
T d1s2ma1 99 SCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--------KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSF 170 (206)
T ss_dssp CEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTT
T ss_pred eEEeecCccchhhHHHHhcccceEEEECCccccccccc--------ceeecccceEEEeechhhhhhhhhHHHHHHHHHh
Confidence 88888776432 2346799999999988654321 11222566799999999999875544 4445
Q ss_pred cc-cceEEEEeccCC
Q 010184 169 TK-SHCKLGLTATLV 182 (516)
Q Consensus 169 ~~-~~~~l~LTATp~ 182 (516)
++ .++++++|||..
T Consensus 171 l~~~~Q~il~SATl~ 185 (206)
T d1s2ma1 171 LPPTHQSLLFSATFP 185 (206)
T ss_dssp SCSSCEEEEEESCCC
T ss_pred CCCCCEEEEEEEeCC
Confidence 54 357899999985
No 36
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=99.55 E-value=1.9e-14 Score=129.31 Aligned_cols=121 Identities=21% Similarity=0.280 Sum_probs=99.0
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ 338 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~ 338 (516)
.+|.++.+.|+.++..+.++..+ ++.++||+|+.+++.+++.+|.++ +++|||||.+.+.|+|+|+|+++|+
T Consensus 29 ~rGgQvy~V~p~I~~~e~~~~~l~~~~p~~~i~~lHGkm~~~eke~im~~F~~g-~~~ILv~TtvIEvGiDvpnA~~iiI 107 (211)
T d2eyqa5 29 LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVLVCTTIIETGIDIPTANTIII 107 (211)
T ss_dssp TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEEEESSTTGGGSCCTTEEEEEE
T ss_pred HcCCeEEEEEcCccchhhHHHHHHHhCCceEEEEEEeccCHHHHHHHHHHHHcC-CcceEEEehhhhhccCCCCCcEEEE
Confidence 68999999999998888777776 466799999999999999999998 9999999999999999999999998
Q ss_pred ecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHH
Q 010184 339 ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (516)
Q Consensus 339 ~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (516)
.++..-...++.|..||+||-+. .++.|-+..........+.+|-..+.
T Consensus 108 ~~a~rfGLaQLhQLRGRVGR~~~-------------~s~c~l~~~~~~~~~~~a~~RL~~l~ 156 (211)
T d2eyqa5 108 ERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLEAIA 156 (211)
T ss_dssp TTTTSSCHHHHHHHHTTCCBTTB-------------CEEEEEEECCGGGSCHHHHHHHHHHT
T ss_pred ecchhccccccccccceeeecCc-------------cceEEEEecCCcCCCchHHHHHHHHH
Confidence 87765589999999999999663 45666555443323344566655553
No 37
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}
Probab=99.49 E-value=3.7e-14 Score=130.24 Aligned_cols=148 Identities=13% Similarity=0.058 Sum_probs=104.4
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc------CCCEEEEEeChhhHHHHHHHHHHhhCCC---
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ--- 95 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~--- 95 (516)
.|+|.|.+|++.++++. +.++.+|||+|||++++.++... ....++++|...+..+....+.......
T Consensus 23 ~pt~iQ~~aip~~l~G~---dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (209)
T d1q0ua_ 23 KPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKD 99 (209)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGG
T ss_pred CCCHHHHHHHHHHHCCC---CeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhhhcccccc
Confidence 79999999999998875 99999999999999998877443 2468999999988888777766543222
Q ss_pred -CCcEEEEeCCcc-----ccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchh----HHHH
Q 010184 96 -DDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKV 165 (516)
Q Consensus 96 -~~~v~~~~~~~~-----~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~----~~~~ 165 (516)
...+....+... ......++|+|+|++.+.....+. .....+..++|+||||++.+.. ...+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~--------~~~~~~l~~lViDEad~ll~~~f~~~v~~I 171 (209)
T d1q0ua_ 100 RMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQ--------ALDVHTAHILVVDEADLMLDMGFITDVDQI 171 (209)
T ss_dssp GCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTT--------CCCGGGCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred ccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhh--------ccccccceEEEEeecccccccccHHHHHHH
Confidence 123333333321 123456899999999886542211 1112456899999999998754 4455
Q ss_pred Hhhc-ccceEEEEeccCCC
Q 010184 166 ISLT-KSHCKLGLTATLVR 183 (516)
Q Consensus 166 l~~~-~~~~~l~LTATp~~ 183 (516)
+..+ +..+.+++|||...
T Consensus 172 ~~~~~~~~Q~il~SATl~~ 190 (209)
T d1q0ua_ 172 AARMPKDLQMLVFSATIPE 190 (209)
T ss_dssp HHTSCTTCEEEEEESCCCG
T ss_pred HHHCCCCCEEEEEEccCCH
Confidence 5555 34678999999843
No 38
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.49 E-value=1.5e-14 Score=123.14 Aligned_cols=84 Identities=15% Similarity=0.179 Sum_probs=72.4
Q ss_pred CCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEEecC
Q 010184 267 RGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341 (516)
Q Consensus 267 ~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~~~~ 341 (516)
++.++||||+++..++.+++.|. +..+||+++.+ .|+++ ..++||||+++++|+| |+++.||+++.
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~G~~~~~~H~~~~~~-------~~~~~-~~~vlvaTd~~~~GiD-~~v~~Vi~~~~ 104 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVS-------VIPTN-GDVVVVATDALMTGFT-GDFDSVIDCNT 104 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHHTCEEEEECTTCCSC-------CCTTS-SCEEEEESSSSCSSSC-CCBSEEEECSE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhccccchhhhhccchhh-------hhhhh-hcceeehhHHHHhccc-cccceEEEEEe
Confidence 46799999999999999999993 56799999854 46776 9999999999999999 99999998632
Q ss_pred ---CCCCHHHHHHHhhcccccC
Q 010184 342 ---HAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 342 ---~~~s~~~~~Qr~GR~~R~g 360 (516)
.+.+...|+||+||++| |
T Consensus 105 ~~~~P~~~~~y~qr~GR~gR-g 125 (138)
T d1jr6a_ 105 SDGKPQDAVSRTQRRGRTGR-G 125 (138)
T ss_dssp ETTEECCHHHHHHHHTTBCS-S
T ss_pred cCCCCCCHHHHHhHhccccC-C
Confidence 12499999999999999 7
No 39
>d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=99.43 E-value=1.6e-14 Score=130.99 Aligned_cols=109 Identities=18% Similarity=0.224 Sum_probs=83.7
Q ss_pred chHHHHHHHHHHHhhcCCCeEEEEeccHHHHHH--------HHHHh--------CCceEecCCCHHHHHHHHHHHhcCCC
Q 010184 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTE--------YAMKL--------RKPMIYGATSHVERTKILQAFKCSRD 314 (516)
Q Consensus 251 ~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~--------l~~~L--------~~~~i~g~~~~~eR~~~l~~F~~~~~ 314 (516)
++...+...++..- .+|..+.|+|+.++..+. ..+.| ++..+||+|++++|.+++++|+++ +
T Consensus 13 ~~~~~v~~~I~~el-~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g-~ 90 (206)
T d1gm5a4 13 DRVNEVYEFVRQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEG-R 90 (206)
T ss_dssp STHHHHHHHHHHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTT-S
T ss_pred ccHHHHHHHHHHHH-HcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCC-C
Confidence 34333344444433 578888888987654332 22222 355799999999999999999998 9
Q ss_pred ccEEEEeCCCcccccccccCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 315 ~~vLv~t~~~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|||||.+.++|||+|+|+++|+++++.-+..++.|..||+||.+.
T Consensus 91 ~~iLVaTtViE~GIDip~a~~iii~~a~~fglsqlhQlrGRvGR~~~ 137 (206)
T d1gm5a4 91 YDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQ 137 (206)
T ss_dssp SSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSST
T ss_pred EEEEEEehhhhccccccCCcEEEEEccCCccHHHHHhhhhheeeccc
Confidence 99999999999999999999988887775589999999999999884
No 40
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=99.43 E-value=6.6e-15 Score=139.08 Aligned_cols=102 Identities=11% Similarity=0.087 Sum_probs=84.8
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhCCceEecCCCHHHHHHHHHHHhcCCCccEEEEe----CCC
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLS----KVG 324 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t----~~~ 324 (516)
+..|+..+..+++. -|.++||||++...++.+++.|.. .+||++++.+|.++++.|++| +++||||| +++
T Consensus 10 ~~~~~~~l~~~l~~----~~~~~iif~~~~~~~~~l~~~l~~-~~hg~~~~~~R~~~~~~f~~g-~~~vLVaT~a~~~v~ 83 (248)
T d1gkub2 10 NDESISTLSSILEK----LGTGGIIYARTGEEAEEIYESLKN-KFRIGIVTATKKGDYEKFVEG-EIDHLIGTAHYYGTL 83 (248)
T ss_dssp SCCCTTTTHHHHTT----SCSCEEEEESSHHHHHHHHHTTTT-SSCEEECTTSSSHHHHHHHHT-SCSEEEEECC-----
T ss_pred CchHHHHHHHHHHH----hCCCEEEEECCHHHHHHHHHHHHH-hccCCCCHHHHHHHHHHHHhC-CCeEEEEeccccchh
Confidence 34456666666653 257899999999999999999975 489999999999999999998 99999999 678
Q ss_pred cccccccc-cCEEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 325 DNSIDIPE-ANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 325 ~~GlDlp~-a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
++|||+|+ +++||+++.|+ |.|++||++|.|.
T Consensus 84 ~rGlDip~~v~~VI~~d~P~-----~~~r~gR~~R~g~ 116 (248)
T d1gkub2 84 VRGLDLPERIRFAVFVGCPS-----FRVTIEDIDSLSP 116 (248)
T ss_dssp -CCSCCTTTCCEEEEESCCE-----EEEECSCGGGSCH
T ss_pred hhccCccccccEEEEeCCCc-----chhhhhhhhccCc
Confidence 99999996 99999998774 6799999999983
No 41
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=99.24 E-value=1.3e-12 Score=122.58 Aligned_cols=90 Identities=18% Similarity=0.146 Sum_probs=76.0
Q ss_pred CCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHH----------HHHHHHHhcCCCccEEEEeCCCcc---ccc
Q 010184 268 GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVER----------TKILQAFKCSRDLNTIFLSKVGDN---SID 329 (516)
Q Consensus 268 ~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR----------~~~l~~F~~~~~~~vLv~t~~~~~---GlD 329 (516)
+.|+||||+++..++.++..|+ +..+||+++++.| .++++.|..+ +.+++|+|++..+ |+|
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G-~~dvVVaT~~~a~g~~giD 114 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTG-DFDSVIDCNTCVTQTVDFS 114 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCC-CBSEEEECCEEEEEEEECC
T ss_pred CCCEEEECCcHHHHHHHHHHHHHCCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcC-CCcEEEEEeehhccCCCCC
Confidence 7799999999999999999993 4568999998876 4578899987 9999999998887 677
Q ss_pred ccccCEEEEecCCCCCHHHHHHHhhcccccC
Q 010184 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (516)
Q Consensus 330 lp~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g 360 (516)
++.+.+||+++.+. |...|+||+||+|| |
T Consensus 115 id~V~~VI~~d~P~-SvesyIQRiGRTGR-G 143 (299)
T d1a1va2 115 LDPTFTIETTTLPQ-DAVSRTQRRGRTGR-G 143 (299)
T ss_dssp CSSSCEEEEEEEEC-BHHHHHHHHTTBCS-S
T ss_pred CCcceEEEeCCCCC-CHHHHHhhccccCC-C
Confidence 77778999997764 99999999999999 6
No 42
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=98.72 E-value=1.5e-08 Score=96.38 Aligned_cols=88 Identities=19% Similarity=0.185 Sum_probs=66.3
Q ss_pred CCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccccCEEEE----
Q 010184 268 GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ---- 338 (516)
Q Consensus 268 ~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~a~~vI~---- 338 (516)
+.+++|||+++..++.++..|. +..+||.++..++. +|+++ +.++||+|+++++|+|++ +..||-
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~g~~V~~l~~~~~~~e~~----~~~~~-~~~~~~~t~~~~~~~~~~-~~~vid~g~~ 109 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYP----TIKQK-KPDFILATDIAEMGANLC-VERVLDCRTA 109 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC------------C-CCSEEEESSSTTCCTTCC-CSEEEECCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCcCcHhHHh----hhhcC-CcCEEEEechhhhceecC-ceEEEecCce
Confidence 5689999999999999999993 45799999987755 46676 899999999999999995 887762
Q ss_pred -----ecCC---------CCCHHHHHHHhhcccccCC
Q 010184 339 -----ISSH---------AGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 339 -----~~~~---------~~s~~~~~Qr~GR~~R~g~ 361 (516)
+++. +-|..+..||.||+||.+.
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~ 146 (299)
T d1yksa2 110 FKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPN 146 (299)
T ss_dssp EEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTT
T ss_pred eceeeecCCCCeeEEeeeecCHHHHHHhcccccccCC
Confidence 2111 1378888999999999863
No 43
>d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.70 E-value=1.2e-07 Score=81.77 Aligned_cols=104 Identities=17% Similarity=0.212 Sum_probs=73.6
Q ss_pred hHHHHHHHH-HHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc
Q 010184 252 KFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (516)
Q Consensus 252 k~~~~~~ll-~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~ 325 (516)
|+.++..-+ ..| ..|..+||++.+++..+.++..|. ..+++......| .+++. +.+..-.|.|+|++++
T Consensus 19 K~~AIi~eV~~~~--~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLnAk~~~~E-a~II~--~Ag~~g~VtIATNmAG 93 (175)
T d1tf5a4 19 KFKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHERE-AQIIE--EAGQKGAVTIATNMAG 93 (175)
T ss_dssp HHHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHHH-HHHHT--TTTSTTCEEEEETTSS
T ss_pred HHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCceeehhhhHHHH-HHHHH--hccCCCceeehhhHHH
Confidence 444444444 444 568899999999999999999993 235666554333 33333 3333557999999999
Q ss_pred cccccccc------C--EEEEecCCCCCHHHHHHHhhcccccCC
Q 010184 326 NSIDIPEA------N--VIIQISSHAGSRRQEAQRLGRILRAKG 361 (516)
Q Consensus 326 ~GlDlp~a------~--~vI~~~~~~~s~~~~~Qr~GR~~R~g~ 361 (516)
+|.|+.-- . +||....+ .|.+.+.|..||++|-|.
T Consensus 94 RGtDikl~~~v~~~GGLhVI~t~~~-~s~Rid~Ql~GR~gRQGd 136 (175)
T d1tf5a4 94 RGTDIKLGEGVKELGGLAVVGTERH-ESRRIDNQLRGRSGRQGD 136 (175)
T ss_dssp TTCCCCCCTTSGGGTSEEEEESSCC-SSHHHHHHHHTTSSGGGC
T ss_pred cCCCccchHHHHhCCCcEEEEeccC-cchhHHHHHhcchhhhCC
Confidence 99988532 2 56665455 599999999999999984
No 44
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}
Probab=98.20 E-value=1.5e-06 Score=84.76 Aligned_cols=146 Identities=10% Similarity=0.043 Sum_probs=88.1
Q ss_pred CCCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH---h----cCCCEEEEEeChhhHHHHHHHHHHhh-CC
Q 010184 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---R----IKKSCLCLATNAVSVDQWAFQFKLWS-TI 94 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~----~~~~~Lvl~P~~~L~~Qw~~e~~~~~-~~ 94 (516)
...+-+.|..|+..++.++ -.+|.+|.|+|||.+...++. . .+.++++++||..-+.+..+.+.... .+
T Consensus 146 ~~~~~~~Q~~A~~~al~~~---~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~~~~~ 222 (359)
T d1w36d1 146 VSDEINWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 222 (359)
T ss_dssp CTTSCCHHHHHHHHHHTBS---EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CcccccHHHHHHHHHHcCC---eEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHHHhhc
Confidence 3456789999999988764 889999999999988654332 2 23579999999876776665554321 11
Q ss_pred CCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhcccceE
Q 010184 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174 (516)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~~~~~~ 174 (516)
... ... .. ....-..|...+.........+. ........++++|+||+-.+..+.+..++..++...+
T Consensus 223 ~~~-----~~~-~~----~~~~~~~t~~~ll~~~~~~~~~~--~~~~~~l~~d~lIIDEaSmv~~~l~~~ll~~~~~~~~ 290 (359)
T d1w36d1 223 PLT-----DEQ-KK----RIPEDASTLHRLLGAQPGSQRLR--HHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHAR 290 (359)
T ss_dssp SCC-----SCC-CC----SCSCCCBTTTSCC-------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCE
T ss_pred Cch-----hhh-hh----hhhhhhhHHHHHHhhhhcchHHH--HhhhcccccceeeehhhhccCHHHHHHHHHHhcCCCE
Confidence 100 000 00 00011223322221110000000 0011124678999999999988888889998888888
Q ss_pred EEEeccCCC
Q 010184 175 LGLTATLVR 183 (516)
Q Consensus 175 l~LTATp~~ 183 (516)
|.|.|=|.+
T Consensus 291 lILvGD~~Q 299 (359)
T d1w36d1 291 VIFLGDRDQ 299 (359)
T ss_dssp EEEEECTTS
T ss_pred EEEECChhh
Confidence 999887654
No 45
>d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]}
Probab=98.13 E-value=2.7e-06 Score=77.81 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=96.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHH---HHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~---Qw~~e~~~~~~~~~~~ 98 (516)
.+++-|.-+--.+.. +.|..+.||-|||+++..++ +..++++-||+.+-.|+. +|...+-+|++++
T Consensus 80 RhyDVQLiGgi~L~~-----G~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDae~m~~iy~~lGls--- 151 (273)
T d1tf5a3 80 FPFKVQLMGGVALHD-----GNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLT--- 151 (273)
T ss_dssp CCCHHHHHHHHHHHT-----TSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCC---
T ss_pred EEehhHHHHHHHHHh-----hhheeecCCCcchhHHHHHHHHHHhcCCCceEEecCccccchhhhHHhHHHHHcCCC---
Confidence 445556655554433 34889999999999988766 334688999999988875 4888888998874
Q ss_pred EEEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc-----h----------
Q 010184 99 ICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-----H---------- 160 (516)
Q Consensus 99 v~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~-----~---------- 160 (516)
|+....+.... -.-.++|+-+|...+....-|.+... ..+....+.+.+.|+||++.+.- |
T Consensus 152 vg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~fDyLrd~~~~-~~~~~~~r~~~~aIvDEvDsiliDeartpliisg~~~~~ 230 (273)
T d1tf5a3 152 VGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVL-YKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQSMTL 230 (273)
T ss_dssp EEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCS-SGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEEEE
T ss_pred ccccccccCHHHHHHHhhCCceecchhhhhhhhcchhhhc-ChhhhccCCCCEEEEEcchhhhhhccCCceEeccCccch
Confidence 66555543221 11247899999887755321110000 01122246678999999987641 1
Q ss_pred ---hHHHHHhhcccceEEEEeccCCCC
Q 010184 161 ---MFRKVISLTKSHCKLGLTATLVRE 184 (516)
Q Consensus 161 ---~~~~~l~~~~~~~~l~LTATp~~~ 184 (516)
+|+...+.+ .+.-|||||...+
T Consensus 231 a~it~q~~f~~y--~~l~gmtgta~~~ 255 (273)
T d1tf5a3 231 ATITFQNYFRMY--EKLAGMTGTAKTE 255 (273)
T ss_dssp EEEEHHHHHTTS--SEEEEEESCCGGG
T ss_pred hhhhHHHHHHHH--HHHhCCccccHHH
Confidence 577777765 4678999998543
No 46
>d1nkta3 c.37.1.19 (A:-15-225,A:350-396) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=98.06 E-value=2e-06 Score=79.02 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEEeChhhHH---HHHHHHHHhhCCCCCc
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDDQ 98 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~---Qw~~e~~~~~~~~~~~ 98 (516)
.+++-|.-+--.+.. +.|..+.||-|||+++..++ +..++++-||+..-.|+. +|...+-+|+++ .
T Consensus 97 RhyDVQLiGgi~l~~-----g~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNdyLA~RDa~~m~~~y~~lGl---s 168 (288)
T d1nkta3 97 RPFDVQVMGAAALHL-----GNVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGL---Q 168 (288)
T ss_dssp CCCHHHHHHHHHHHT-----TEEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTC---C
T ss_pred eeeeehhHHHHHHhh-----hhhhcccCCCchhHHHHHHHHHHHhcCCCeEEEecCchhhhhhHHHHHHHHHHhCC---C
Confidence 345557666554432 35888999999999987766 334688999999988875 488888898887 4
Q ss_pred EEEEeCCcccc---ccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCc----------------
Q 010184 99 ICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---------------- 159 (516)
Q Consensus 99 v~~~~~~~~~~---~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~---------------- 159 (516)
|+....+.... -.-.++|+-+|...+....-|.+... ..+..-.+.+.+.|+||++.+.-
T Consensus 169 vg~~~~~~~~~~~~~~Y~~di~Y~t~~e~gfDyLrd~~~~-~~~~~~~r~~~~aIvDEvDsiLiDeartpLiis~~~~a~ 247 (288)
T d1nkta3 169 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAH-SLDDLVQRGHHYAIVDEVDSILIDEARTPLIISNQTLAT 247 (288)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCS-SGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEEEEEE
T ss_pred cCcccccCChHHHHHHhhcccccccHHHHhhhhhhhhhcc-ChhhhcccCCcEEEEEcccccccccccCceEeccCCcch
Confidence 66666554321 12347899999887755321111000 01122245678999999987641
Q ss_pred hhHHHHHhhcccceEEEEeccCCCC
Q 010184 160 HMFRKVISLTKSHCKLGLTATLVRE 184 (516)
Q Consensus 160 ~~~~~~l~~~~~~~~l~LTATp~~~ 184 (516)
-+|+...+.+ ...-+||||...+
T Consensus 248 it~qn~fr~y--~kl~gmtgta~te 270 (288)
T d1nkta3 248 ITLQNYFRLY--DKLAGMTGTAQTE 270 (288)
T ss_dssp ECHHHHHTTS--SEEEEEESCCGGG
T ss_pred hhHHHHHHHH--HHHhCCcccHHHH
Confidence 1566666654 4578899998643
No 47
>d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=97.82 E-value=0.00016 Score=63.01 Aligned_cols=105 Identities=16% Similarity=0.193 Sum_probs=75.3
Q ss_pred chHHH-HHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-----CceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCC
Q 010184 251 NKFRA-CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (516)
Q Consensus 251 ~k~~~-~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~ 324 (516)
.|+.+ +..+...| ..|..+||.+.+++..+.+...|. ..+++......| .+|+. +.|..-.|-|+|+++
T Consensus 18 ~K~~Avv~ei~~~h--~~GqPVLVGT~SVe~SE~lS~lL~~~gi~h~vLNAK~herE-AeIIA--qAG~~GaVTIATNMA 92 (219)
T d1nkta4 18 AKYIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQE-ATIIA--VAGRRGGVTVATNMA 92 (219)
T ss_dssp HHHHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHH-HHHHH--TTTSTTCEEEEETTC
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEeeCcHHHHHHHHHHHHHhccchhccchhhHHHH-HHHHH--hcccCCcEEeecccc
Confidence 34444 44444556 579999999999999999999993 345666644222 23333 344355788999999
Q ss_pred cccccccc--------------------------------------------------cC--EEEEecCCCCCHHHHHHH
Q 010184 325 DNSIDIPE--------------------------------------------------AN--VIIQISSHAGSRRQEAQR 352 (516)
Q Consensus 325 ~~GlDlp~--------------------------------------------------a~--~vI~~~~~~~s~~~~~Qr 352 (516)
++|.|+.- +. +||-...|- |++..-|-
T Consensus 93 GRGTDI~LGgn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIGTErHe-SrRIDnQL 171 (219)
T d1nkta4 93 GRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHE-SRRIDNQL 171 (219)
T ss_dssp STTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCS-SHHHHHHH
T ss_pred CCCCceeecCchhhhhHHHhhhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeccccc-cccccccc
Confidence 99999932 12 566666674 99999999
Q ss_pred hhcccccCC
Q 010184 353 LGRILRAKG 361 (516)
Q Consensus 353 ~GR~~R~g~ 361 (516)
.||+||-|.
T Consensus 172 RGRsGRQGD 180 (219)
T d1nkta4 172 RGRSGRQGD 180 (219)
T ss_dssp HHTSSGGGC
T ss_pred cccccccCC
Confidence 999999884
No 48
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=97.74 E-value=3.6e-05 Score=75.79 Aligned_cols=77 Identities=17% Similarity=0.262 Sum_probs=65.2
Q ss_pred cccCCCCCCCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 17 NMELKPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 17 ~~~l~~~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.+.+...+.+.--|-+||+++..+ .+.+..+|.+-||+|||++...++.+.++|+|||+|+..++.||++++..|++
T Consensus 3 ~f~~~~~~~p~gDQP~aI~~l~~~l~~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~~~A~qL~~dL~~~l~ 81 (413)
T d1t5la1 3 RFQLVAPYEPQGDQPQAIAKLVDGLRRGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNKTLAGQLYSELKEFFP 81 (413)
T ss_dssp CCCCCCSSCCCTTHHHHHHHHHHHHHHTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHCT
T ss_pred ceEEecCCCCCCCCHHHHHHHHHHHhcCCCcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHcC
Confidence 355667788888899999887653 12246789999999999999999999999999999999999999999999953
No 49
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}
Probab=97.49 E-value=0.00026 Score=62.50 Aligned_cols=105 Identities=10% Similarity=0.051 Sum_probs=67.8
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCC------CEEEEEeChh--hHHHHHHHHHHhhCCCCCcEEE
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK------SCLCLATNAV--SVDQWAFQFKLWSTIQDDQICR 101 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~------~~Lvl~P~~~--L~~Qw~~e~~~~~~~~~~~v~~ 101 (516)
|.+.++.+++++...+.++.+|.|+|||-.+..++....+ -++++.|... -++|.++ +.+++...+.
T Consensus 2 ~~~~l~~~i~~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~-i~~~~~~~~~---- 76 (198)
T d2gnoa2 2 QLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRT-IKDFLNYSPE---- 76 (198)
T ss_dssp HHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHH-HHHHHTSCCS----
T ss_pred HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHH-HHHHHhhCcc----
Confidence 7888999999877778999999999999999987754321 2666655421 1344332 3333221100
Q ss_pred EeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHH---HHhhcccceEEEEe
Q 010184 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VISLTKSHCKLGLT 178 (516)
Q Consensus 102 ~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~---~l~~~~~~~~l~LT 178 (516)
...+.++|+||||++....... .+...+...++.|+
T Consensus 77 -----------------------------------------~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLi 115 (198)
T d2gnoa2 77 -----------------------------------------LYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLN 115 (198)
T ss_dssp -----------------------------------------SSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEE
T ss_pred -----------------------------------------cCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeec
Confidence 1456799999999998765544 44444455555555
Q ss_pred cc
Q 010184 179 AT 180 (516)
Q Consensus 179 AT 180 (516)
.+
T Consensus 116 t~ 117 (198)
T d2gnoa2 116 TR 117 (198)
T ss_dssp ES
T ss_pred cC
Confidence 33
No 50
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=97.40 E-value=0.0007 Score=60.05 Aligned_cols=43 Identities=16% Similarity=0.249 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHH---HhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKM---FGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~---~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.++|||.++.+.+ +..++ ++..++.+|.|+|||..+..++..+
T Consensus 2 ~~yPw~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 2 RWYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp CCCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhc
Confidence 5789998887765 34444 3457889999999999999988765
No 51
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}
Probab=97.22 E-value=0.00021 Score=67.18 Aligned_cols=64 Identities=9% Similarity=0.057 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHH----hcC---CCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIK---KSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~---~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
+|.|-|.+++.. .. +..+|.++.|+|||.+.+.-+. ..+ .++||++++++++......+.+..+
T Consensus 1 ~L~~eQ~~av~~--~~---~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~ 71 (306)
T d1uaaa1 1 RLNPGQQQAVEF--VT---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 71 (306)
T ss_dssp CCCHHHHHHHHC--CS---SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHhC--CC---CCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhcC
Confidence 588999999974 22 3789999999999998765432 212 5799999999999988888877643
No 52
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=96.92 E-value=0.0015 Score=64.06 Aligned_cols=69 Identities=20% Similarity=0.264 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHHhC--CCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
++..-|-+||+.++.. .+.+...|.+.+|+|||++...++...++|+|||||+...+.+|.+++..|++
T Consensus 8 ~p~~dqp~aI~~l~~~L~~g~~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~~~~A~~l~~dL~~~l~ 78 (408)
T d1c4oa1 8 SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNKILAAQLAAEFRELFP 78 (408)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHHHCT
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEecCCCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHhcC
Confidence 5666787888776443 12235688899999999999999999999999999999999999999999853
No 53
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=96.75 E-value=0.0011 Score=62.49 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc---C----CCEEEEEeChhhHHHHHHHHHHhh
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K----KSCLCLATNAVSVDQWAFQFKLWS 92 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~----~~~Lvl~P~~~L~~Qw~~e~~~~~ 92 (516)
.|.|-|.++++.. . +..+|.++.|+|||.+.+.-+..+ + .++|++++++..+......+..+.
T Consensus 11 ~L~~eQ~~~v~~~--~---g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~ 80 (318)
T d1pjra1 11 HLNKEQQEAVRTT--E---GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLL 80 (318)
T ss_dssp TSCHHHHHHHHCC--S---SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHhCC--C---CCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhc
Confidence 4889999999841 2 378999999999999987644221 1 479999999999999888887764
No 54
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.62 E-value=0.002 Score=57.55 Aligned_cols=41 Identities=20% Similarity=0.088 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+...+.+..|+.++...+.++.||+|+|||.++-.++..+.
T Consensus 21 ~~~~~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 21 KETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp THHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence 45567777888877666799999999999999988876543
No 55
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}
Probab=96.60 E-value=0.0027 Score=57.68 Aligned_cols=36 Identities=17% Similarity=0.271 Sum_probs=31.0
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
+++.++.+|+|+|||.++-+++...+.+++.+-++.
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~ 77 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 77 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHH
Confidence 456899999999999999999999998988886643
No 56
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.57 E-value=0.0036 Score=55.77 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+...+.+..|+.++...+.++.+|+|+|||.++-.++..+
T Consensus 19 ~~~~~~~L~~~i~~~~~~~lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 19 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEECCCCCChhHHHHHHHHHh
Confidence 45667778888887765678999999999999988888654
No 57
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}
Probab=96.49 E-value=0.0085 Score=53.88 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhCCC-CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.-.+.+..++.+++ ++..++.+|.|+|||..+..++..+
T Consensus 18 ~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l 58 (239)
T d1njfa_ 18 EHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 58 (239)
T ss_dssp HHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 333444555665554 3447889999999999998877665
No 58
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.44 E-value=0.0031 Score=56.46 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+...+.+..++.++...+.++.+|+|+|||.++-.++..+
T Consensus 18 ~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 18 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence 4556778888887665678999999999999998887653
No 59
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}
Probab=96.31 E-value=0.015 Score=47.63 Aligned_cols=35 Identities=23% Similarity=0.147 Sum_probs=27.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
=-+|.+||.||||.-.+..+.+ .+++++++-|...
T Consensus 9 l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~~~D 46 (141)
T d1xx6a1 9 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEID 46 (141)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred EEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEeccc
Confidence 3478899999999988877643 4689999999765
No 60
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=96.30 E-value=0.0017 Score=58.91 Aligned_cols=41 Identities=15% Similarity=0.072 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHhCC-CCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+...+.+..++..+ ...+.+|.+|+|+|||.++..++..+
T Consensus 16 ~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 16 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 445555566555543 23468999999999999999888765
No 61
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=96.29 E-value=0.0065 Score=54.17 Aligned_cols=41 Identities=20% Similarity=0.234 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+...+.+..|+.++...+.+|.||+|+|||.++-.++..+
T Consensus 29 ~~~~~~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 29 QEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp CHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34555667777777766688999999999999998887665
No 62
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.08 E-value=0.0035 Score=57.36 Aligned_cols=37 Identities=19% Similarity=0.238 Sum_probs=30.8
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
.+++.+|.+|+|+|||..+-+++...+.+++.+.++.
T Consensus 37 ~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~ 73 (258)
T d1e32a2 37 PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPE 73 (258)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CCceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchh
Confidence 3467899999999999999888888888888876544
No 63
>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}
Probab=95.92 E-value=0.027 Score=49.47 Aligned_cols=41 Identities=12% Similarity=-0.013 Sum_probs=26.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~ 86 (516)
..+|.+|+|+|||-.+.+++... +.+++++ +...+..+...
T Consensus 38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~-~~~~~~~~~~~ 81 (213)
T d1l8qa2 38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYS-SADDFAQAMVE 81 (213)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEE-EHHHHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHHHHhccCccceEEe-chHHHHHHHHH
Confidence 47899999999998877766443 3445444 44444443333
No 64
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}
Probab=95.81 E-value=0.025 Score=50.36 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=25.2
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
..+.++.+|+|+|||..+-+++...+.++..+
T Consensus 35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~ 66 (239)
T d1ixsb2 35 LEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 66 (239)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 46889999999999999988877665554443
No 65
>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.81 E-value=0.027 Score=45.54 Aligned_cols=34 Identities=24% Similarity=0.247 Sum_probs=27.7
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
-++.+||.||||.--+..+.. .+++++++-|...
T Consensus 5 ~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D 41 (133)
T d1xbta1 5 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 41 (133)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EEEEecccCHHHHHHHHHHHHHHHcCCcEEEEecccc
Confidence 478899999999887776643 4688999999865
No 66
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}
Probab=95.72 E-value=0.027 Score=49.31 Aligned_cols=32 Identities=25% Similarity=0.121 Sum_probs=22.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (516)
-.++++|||+|||.+..-++... ++++.+++.
T Consensus 11 vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~ 45 (211)
T d2qy9a2 11 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 45 (211)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEec
Confidence 35678999999999888776443 455655553
No 67
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}
Probab=95.56 E-value=0.0088 Score=61.46 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc----C---CCEEEEEeChhhHHHHHHHHHHhhC
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWST 93 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~e~~~~~~ 93 (516)
.|.+-|.+++.. ..+ +.+|.+..|||||.+.+.-+..+ + .++|+|+.|+..+.+..+.+...++
T Consensus 11 ~L~~eQ~~~v~~--~~~---~~lV~A~AGSGKT~~lv~ri~~ll~~~~~~p~~Il~ltft~~Aa~ei~~Ri~~~l~ 81 (623)
T g1qhh.1 11 HLNKEQQEAVRT--TEG---PLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (623)
T ss_dssp TSCHHHHHHHHC--CSS---CEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hcCHHHHHHHcC--CCC---CEEEEEeCchHHHHHHHHHHHHHHHcCCCCcccEEEEeccHHHHHHHHHHHHHhcc
Confidence 688999999973 223 78889999999999988754322 1 4699999999989988888877643
No 68
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}
Probab=95.56 E-value=0.02 Score=46.71 Aligned_cols=34 Identities=21% Similarity=0.124 Sum_probs=28.1
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChh
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (516)
-++.+||.||||.--+..+.+ .+++++++-|...
T Consensus 5 ~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D 41 (139)
T d2b8ta1 5 EFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 41 (139)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEccc
Confidence 478899999999888776643 4789999999875
No 69
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=95.51 E-value=0.0062 Score=55.17 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=27.7
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
.++.++.+|+|+|||..+-+++...+.+++-+.
T Consensus 40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~ 72 (246)
T d1d2na_ 40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 72 (246)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHhhcccccccccc
Confidence 357899999999999999998888887777654
No 70
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=95.51 E-value=0.029 Score=48.40 Aligned_cols=41 Identities=15% Similarity=0.165 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
-|+-..+-+..++......+.+|++|.|.|||-+.-.++..
T Consensus 26 gRd~Ei~~l~~iL~r~~k~n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 26 GRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccCCCCeEEEecCCcccHHHHHHHHHH
Confidence 46666666667777655569999999999999887766643
No 71
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}
Probab=95.40 E-value=0.046 Score=47.66 Aligned_cols=51 Identities=16% Similarity=0.076 Sum_probs=31.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEe-C-hhhHHHHHHHHHHhhCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT-N-AVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P-~-~~L~~Qw~~e~~~~~~~ 94 (516)
+-.++++|||+|||.+..-++.. .++++.+++. + +.-+.++.+.+.+..++
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 62 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCc
Confidence 45577999999999988776643 2456655553 2 33344445555555554
No 72
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}
Probab=95.20 E-value=0.057 Score=47.25 Aligned_cols=50 Identities=16% Similarity=-0.070 Sum_probs=30.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE-eC-hhhHHHHHHHHHHhhC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA-TN-AVSVDQWAFQFKLWST 93 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~-P~-~~L~~Qw~~e~~~~~~ 93 (516)
.-.++++|||+|||.+...++.+ .++++.+++ .+ +.=+.++.+.+.+..+
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~ 66 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVG 66 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcC
Confidence 34577899999999987766643 345655555 33 3334444555555443
No 73
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=95.19 E-value=0.015 Score=51.05 Aligned_cols=49 Identities=14% Similarity=0.024 Sum_probs=29.8
Q ss_pred cEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeC--hhhHHHHHHHHHHhhCC
Q 010184 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN--AVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~--~~L~~Qw~~e~~~~~~~ 94 (516)
.++++|||+|||.+...++.. .++++.+++.- +.-+.++.+.+.+.+++
T Consensus 13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v 66 (207)
T d1ls1a2 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV 66 (207)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCC
Confidence 466899999999988776643 34667666643 33333344444444333
No 74
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}
Probab=95.02 E-value=0.046 Score=49.56 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=71.6
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---------CCceEecCCCHHHHHHHHHHHhcCCCccEEE
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv 319 (516)
.++|-.+....+...- ..|.++++.+++.--+...+..+ .+..+||+++..+|.++....++| +++++|
T Consensus 114 GSGKT~Va~~a~~~~~-~~g~q~~~m~Pt~~La~Qh~~~~~~~f~~~~~~v~~l~~~~~~~~r~~~~~~~~~g-~~~iiI 191 (264)
T d1gm5a3 114 GSGKTVVAQLAILDNY-EAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVI 191 (264)
T ss_dssp SSSHHHHHHHHHHHHH-HHTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEE
T ss_pred cccccHHHHHHHHHHH-hcccceeEEeehHhhhHHHHHHHHHhhhhccccceeeccccchHHHHHHHHHHHCC-CCCEEE
Confidence 4577666655554433 56889999999987666555444 245689999999999999999997 999999
Q ss_pred EeCC-CcccccccccCEEEEecCCCCCHHHHHHHhh
Q 010184 320 LSKV-GDNSIDIPEANVIIQISSHAGSRRQEAQRLG 354 (516)
Q Consensus 320 ~t~~-~~~GlDlp~a~~vI~~~~~~~s~~~~~Qr~G 354 (516)
+|.+ +...+.+.+...||+..-|--+ +.||.+
T Consensus 192 GThsl~~~~~~f~~LglviiDEqH~fg---v~Qr~~ 224 (264)
T d1gm5a3 192 GTHALIQEDVHFKNLGLVIIDEQHRFG---VKQREA 224 (264)
T ss_dssp ECTTHHHHCCCCSCCCEEEEESCCCC--------CC
T ss_pred eehHHhcCCCCccccceeeeccccccc---hhhHHH
Confidence 9954 4556777788889987655323 467653
No 75
>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=94.44 E-value=0.084 Score=46.79 Aligned_cols=96 Identities=13% Similarity=0.079 Sum_probs=74.2
Q ss_pred CcchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh---------CCceEecCCCHHHHHHHHHHHhcCCCccEEE
Q 010184 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (516)
Q Consensus 249 ~~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv 319 (516)
.++|-.+....+...- ..|.++++.++..--+...+..+ ++..+||.++..+|.++.+.+.+| ++++||
T Consensus 86 GsGKT~V~~~a~~~~~-~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~g-~~~ivi 163 (233)
T d2eyqa3 86 GFGKTEVAMRAAFLAV-DNHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEG-KIDILI 163 (233)
T ss_dssp CTTTHHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTT-CCSEEE
T ss_pred CCCcHHHHHHHHHHHH-HcCCceEEEccHHHhHHHHHHHHHHHHhhCCCEEEeccCcccchhHHHHHHHHhCC-CCCEEE
Confidence 4577766666664444 67899999999988777766655 234689999999999999999998 999999
Q ss_pred EeCCC-cccccccccCEEEEecCCCCCH
Q 010184 320 LSKVG-DNSIDIPEANVIIQISSHAGSR 346 (516)
Q Consensus 320 ~t~~~-~~GlDlp~a~~vI~~~~~~~s~ 346 (516)
.|.++ ...+.+++...||+..-|--+.
T Consensus 164 Gths~l~~~~~f~~LgLiIiDEeH~fg~ 191 (233)
T d2eyqa3 164 GTHKLLQSDVKFKDLGLLIVDEEHRFGV 191 (233)
T ss_dssp ECTHHHHSCCCCSSEEEEEEESGGGSCH
T ss_pred eehhhhccCCccccccceeeechhhhhh
Confidence 99654 4568888888888876554354
No 76
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=94.39 E-value=0.011 Score=54.12 Aligned_cols=34 Identities=18% Similarity=0.318 Sum_probs=29.6
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
.++.+|.+|.|+|||..+-+++...+.+++.+.+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~ 74 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 74 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEH
Confidence 4567888999999999999999999988877764
No 77
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=94.18 E-value=0.039 Score=50.20 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
-|+--.+-+-.++......+.+|++|.|.|||-+.-.++..
T Consensus 22 gRd~Ei~~l~~iL~r~~k~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 22 GREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence 45544555555666555568999999999999887776644
No 78
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=94.16 E-value=0.041 Score=48.80 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=29.0
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
...+.++.+|+|+|||.++-.++...+.+++++..
T Consensus 34 ~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~ 68 (238)
T d1in4a2 34 VLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSG 68 (238)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEET
T ss_pred CCCeEEEECCCCCcHHHHHHHHHhccCCCcccccC
Confidence 34579999999999999999998888877776543
No 79
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}
Probab=93.94 E-value=0.028 Score=50.83 Aligned_cols=34 Identities=9% Similarity=0.092 Sum_probs=28.5
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
++..+|.+|+|+|||.++-.++...+.++++|-+
T Consensus 32 P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~ 65 (273)
T d1gvnb_ 32 PTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 65 (273)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhhcceEEEec
Confidence 3457899999999999999999988888777643
No 80
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=93.81 E-value=0.023 Score=53.07 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
..++.++++|||+|||..|-+++..+..+++.+-.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s 83 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 83 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccccchhccccc
Confidence 346889999999999999999888888776666543
No 81
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Probab=93.74 E-value=0.024 Score=55.75 Aligned_cols=36 Identities=14% Similarity=0.233 Sum_probs=30.8
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
+.+.++.+|||+|||+.+=+++..+.-|++++=-|+
T Consensus 49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~ 84 (443)
T d1g41a_ 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 84 (443)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecce
Confidence 348999999999999999999999999988875443
No 82
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}
Probab=93.66 E-value=0.2 Score=43.58 Aligned_cols=50 Identities=12% Similarity=-0.094 Sum_probs=26.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEe-C-hhhHHHHHHHHHHhhCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N-AVSVDQWAFQFKLWSTI 94 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P-~-~~L~~Qw~~e~~~~~~~ 94 (516)
-.++++|||+|||.+..-++... ++++.+++- + +.=+..+.+.+.+..++
T Consensus 14 vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v 68 (211)
T d1j8yf2 14 VIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV 68 (211)
T ss_dssp EEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCc
Confidence 45668999999999877666433 456655554 2 33344444555554443
No 83
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}
Probab=93.05 E-value=0.015 Score=54.41 Aligned_cols=30 Identities=10% Similarity=0.036 Sum_probs=22.4
Q ss_pred EEEecCCCcHHHHHHHHHHhcC--CCEEEEEe
Q 010184 47 IIVLPCGAGKSLVGVSAACRIK--KSCLCLAT 76 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P 76 (516)
++.+|+|+|||+.+-+++..++ .+++.|.+
T Consensus 127 l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 127 IVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred EEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence 4479999999999999887764 34444444
No 84
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=92.99 E-value=0.072 Score=47.49 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=28.3
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (516)
+..+|.||+|+|||.++-+++...+..+..+-.+
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~ 86 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 86 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhhhhccccc
Confidence 4689999999999999999999888777665443
No 85
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=92.82 E-value=0.1 Score=46.15 Aligned_cols=58 Identities=21% Similarity=0.244 Sum_probs=41.9
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.|+.++.++ ++.-.+|.+|+|+|||..++.++... +.++++++.... ..++.+.+..+
T Consensus 14 ~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~~-~~~~~~~~~~~ 76 (242)
T d1tf7a2 14 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSW 76 (242)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTT
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccCC-HHHHHHHHHHc
Confidence 477777754 33467889999999999998877553 567888886543 66666666654
No 86
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=92.69 E-value=0.24 Score=47.26 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
-|+--.+-+-.++......+.+|++|.|.|||-+.-.++..
T Consensus 26 gr~~ei~~~~~~L~r~~k~n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 26 GRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp SCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCCCCeEECCCCCCHHHHHHHHHHH
Confidence 46655555555666555568999999999999887666543
No 87
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}
Probab=92.66 E-value=0.041 Score=45.10 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
++.+|.+|+|+|||.+|-.++.+++.+++
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L~~~~i 31 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 31 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 47889999999999999999999887764
No 88
>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}
Probab=92.29 E-value=0.24 Score=44.65 Aligned_cols=54 Identities=22% Similarity=0.262 Sum_probs=38.8
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHH
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWA 85 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~ 85 (516)
.+++.+++ ++ ..+-..|.+|.|+|||..++.++.. .+..++++-.-..+..+|.
T Consensus 40 ~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a 99 (263)
T d1u94a1 40 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYA 99 (263)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHH
T ss_pred HHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHH
Confidence 36888886 43 3345678899999999988877643 4578888887776555553
No 89
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=92.26 E-value=0.12 Score=45.66 Aligned_cols=59 Identities=20% Similarity=0.255 Sum_probs=39.2
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhhHHHHHHHHHH
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
..+..++.+| .+.-.+|.+|+|+|||..++.++.+. +..++++.-......++......
T Consensus 23 ~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (254)
T d1pzna2 23 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQ 92 (254)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHH
T ss_pred HHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccchhHHHHHHHHHH
Confidence 3467788765 33567889999999999999887553 24566665544434445544444
No 90
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=92.18 E-value=0.078 Score=47.44 Aligned_cols=45 Identities=20% Similarity=0.133 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHHhC------CCCcccEEEecCCCcHHHHHHHHHHhcC
Q 010184 24 AQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~------~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..=|+.|.+.+..++.. ...++.+|.+|+|+|||.++-.++..++
T Consensus 18 l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~ 68 (276)
T d1fnna2 18 LPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 68 (276)
T ss_dssp CTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHh
Confidence 34567888777766542 2335789999999999999888877654
No 91
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}
Probab=92.09 E-value=0.058 Score=48.75 Aligned_cols=36 Identities=22% Similarity=0.356 Sum_probs=30.7
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeCh
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (516)
++..++.+|+|+|||.++-+++...+.+++.+-++.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~ 80 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHH
Confidence 457899999999999999999988888888876654
No 92
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=92.09 E-value=0.089 Score=49.00 Aligned_cols=32 Identities=22% Similarity=0.552 Sum_probs=23.8
Q ss_pred HHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 138 IEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 138 ~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
.+.+....+++|++||++.+....+..++..+
T Consensus 118 ~~~~~~~p~~Vvl~DEieK~~~~v~~~ll~~l 149 (315)
T d1qvra3 118 TEAVRRRPYSVILFDEIEKAHPDVFNILLQIL 149 (315)
T ss_dssp HHHHHHCSSEEEEESSGGGSCHHHHHHHHHHH
T ss_pred HHHHHhCCCcEEEEehHhhcCHHHHHHHHHHh
Confidence 34455577899999999999887666655554
No 93
>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}
Probab=91.91 E-value=0.28 Score=44.30 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=39.6
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHH
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAF 86 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~ 86 (516)
.+++.++. ++ .++-..+.+|.|+|||..++.++.. .++.++++-.-..+-..|.+
T Consensus 43 ~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~ 103 (268)
T d1xp8a1 43 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYAR 103 (268)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHH
T ss_pred HHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHH
Confidence 36888886 43 3345678899999999998877643 35789999887776665544
No 94
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=91.67 E-value=0.075 Score=46.80 Aligned_cols=57 Identities=19% Similarity=0.242 Sum_probs=37.8
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhhHHHHHHHH
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
..+..++.+| +++-.+|.+|+|+|||..++.++... +.+++++.-....-.++....
T Consensus 21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 88 (251)
T d1szpa2 21 KNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSI 88 (251)
T ss_dssp HHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCCCGGGGHHH
T ss_pred HHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchHHHHHHHHH
Confidence 4577788764 33567889999999999999887543 246777765444333343333
No 95
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Probab=91.23 E-value=0.12 Score=49.08 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
...+.++.+|||.|||.++=.++.....+++.+=
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D 100 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 100 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcceeeeCCCCccHHHHHHHHHhhcccceeehh
Confidence 3457899999999999999888877776655443
No 96
>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=91.14 E-value=0.36 Score=43.48 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=39.6
Q ss_pred HHHHHHHh-CC--CCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEEeChhhHHHHHHHH
Q 010184 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (516)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~e~ 88 (516)
.+++.++. .| .++-..+.+|.|+|||..++.++.. .++.+++|-.-..+-.+|.+.+
T Consensus 46 ~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~ 108 (269)
T d1mo6a1 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKL 108 (269)
T ss_dssp HHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHH
T ss_pred HHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHh
Confidence 46788886 43 2345577899999999988876643 4577888887777666664443
No 97
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}
Probab=90.60 E-value=0.13 Score=49.68 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.-+.+.|.+.+..+..... +-.++++|||+|||.+..+++..+
T Consensus 140 LG~~~~~~~~l~~l~~~~~-GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 140 LGMTAHNHDNFRRLIKRPH-GIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SCCCHHHHHHHHHHHTSSS-EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHhhhh-ceEEEEcCCCCCccHHHHHHhhhh
Confidence 4578899999998886531 356778999999999988887665
No 98
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=90.53 E-value=0.089 Score=43.68 Aligned_cols=32 Identities=16% Similarity=0.027 Sum_probs=25.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+-.+|.+|+|+|||.++-.++...+.+++.+-
T Consensus 5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~ 36 (176)
T d1zp6a1 5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFH 36 (176)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 34678899999999999888887777776653
No 99
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=90.35 E-value=0.1 Score=43.33 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=25.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
.+.+|.+++|+|||.++-.++.+++-+++
T Consensus 2 p~IvliG~~G~GKSTig~~La~~l~~~fi 30 (165)
T d2iyva1 2 PKAVLVGLPGSGKSTIGRRLAKALGVGLL 30 (165)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 36788899999999999999999988865
No 100
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}
Probab=90.18 E-value=0.088 Score=43.50 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
..+|.+|+|+|||.++-.++.+.+.+++
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~~~~i 33 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSGLKYI 33 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence 5788999999999999999988887765
No 101
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.98 E-value=0.24 Score=43.54 Aligned_cols=60 Identities=10% Similarity=0.065 Sum_probs=42.0
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc---------CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.+|+.+++++ .+.-.+|++|+|+|||..++.++... ...++++.....+..+|...+...
T Consensus 24 ~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (258)
T d1v5wa_ 24 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 94 (258)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHHHHHHHHHHHHHhh
Confidence 4577788765 23456888999999999999988543 134777776666666666666543
No 102
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Probab=89.88 E-value=0.24 Score=41.09 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=18.8
Q ss_pred cEEEecCCCcHHHHHHHHHHhcC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.+|.+|+|+|||...-.++..+.
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~ 25 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCcHHHHHHHHHHhcCC
Confidence 57999999999998777775554
No 103
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=89.75 E-value=0.12 Score=44.18 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=28.0
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
..|..++.++ ++.-.+|.+|+|+|||..++.++.+.
T Consensus 10 ~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 10 KELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4577777754 34577899999999999999888654
No 104
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=89.59 E-value=0.38 Score=42.74 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=19.9
Q ss_pred CCccEEEEccCccCCchhHHHHHhhc
Q 010184 144 REWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 144 ~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
.+-|.+++||+|.++......++..+
T Consensus 93 a~gGtL~l~~i~~L~~~~Q~~L~~~l 118 (247)
T d1ny5a2 93 ADGGTLFLDEIGELSLEAQAKLLRVI 118 (247)
T ss_dssp TTTSEEEEESGGGCCHHHHHHHHHHH
T ss_pred cCCCEEEEeChHhCCHHHHHHHHHHH
Confidence 44579999999999987666666555
No 105
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}
Probab=89.45 E-value=0.11 Score=42.94 Aligned_cols=28 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
+.+|.+++|+|||.++-.++..++-+++
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l~~~~~ 29 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDLDLVFL 29 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5788999999999999999999887655
No 106
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}
Probab=89.33 E-value=0.17 Score=47.93 Aligned_cols=44 Identities=18% Similarity=0.094 Sum_probs=33.1
Q ss_pred HHHHHHHhCC-CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
+.+..++.+. ..+..++.+|+|+|||..+.+++..++.+++-+-
T Consensus 142 ~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in 186 (362)
T d1svma_ 142 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN 186 (362)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS
T ss_pred HHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE
Confidence 3344444443 2346788899999999999999999999887764
No 107
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}
Probab=89.30 E-value=0.11 Score=43.22 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=25.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
+..+|.+++|+|||.+|-.++.+++-+++
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~i 31 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36788999999999999999999987755
No 108
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}
Probab=89.28 E-value=0.13 Score=42.36 Aligned_cols=27 Identities=33% Similarity=0.361 Sum_probs=22.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
-.+|.+|+|+|||.+|-.++...+..+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~~~~ 30 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLDNSA 30 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCE
Confidence 468889999999999988888876543
No 109
>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}
Probab=89.26 E-value=0.23 Score=46.27 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcC--CCEEEEEeChhh
Q 010184 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVS 80 (516)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L 80 (516)
+...+..+...+ ++.+++++||+|||...-+++..+. .+++.|-.+.+|
T Consensus 155 ~~~~l~~~v~~~--~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~~El 205 (323)
T d1g6oa_ 155 AISAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEI 205 (323)
T ss_dssp HHHHHHHHHHHT--CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCC
T ss_pred HHHHHHHHHHhC--CCEEEEeeccccchHHHHHHhhhcccccceeeccchhhh
Confidence 344455555555 4899999999999988777666654 577777777764
No 110
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}
Probab=88.95 E-value=0.29 Score=42.47 Aligned_cols=57 Identities=12% Similarity=0.190 Sum_probs=37.4
Q ss_pred HHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHHH
Q 010184 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL 90 (516)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~~ 90 (516)
+|+.++.+| ++.-.+|.+++|+|||..++.++.. .+.+++++...-. .......+..
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~~-~~~~~~~~~~ 76 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARS 76 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGG
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccCC-HHHHHHHHHH
Confidence 367777654 3456789999999999988765532 2467888775433 4444444443
No 111
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}
Probab=88.76 E-value=0.12 Score=43.11 Aligned_cols=30 Identities=20% Similarity=0.146 Sum_probs=25.6
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
.+..+|.||+|+|||.++-.++.+.+.+++
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i 36 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTSA 36 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence 357899999999999999999988876654
No 112
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}
Probab=88.47 E-value=0.2 Score=41.31 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=25.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (516)
-.+|.+++|+|||.++-.++..++.+.+.+
T Consensus 5 iI~l~G~~GsGKsTva~~L~~~l~~~~~~~ 34 (178)
T d1qhxa_ 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeEEe
Confidence 457779999999999999999988776554
No 113
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=88.29 E-value=0.21 Score=46.32 Aligned_cols=92 Identities=17% Similarity=0.244 Sum_probs=52.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l 124 (516)
..++++|||.|||..|-.++..+..+++.+--+ ... . . ..+..+.|.. .+.+-...+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s-~~~--------~---~--~~~~~l~g~~-------~gy~g~~~~-- 110 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDMS-EYM--------E---R--HTVSRLIGAP-------PGYVGFDQG-- 110 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGG-GCS--------S---S--SCCSSSCCCC-------SCSHHHHHT--
T ss_pred EEEEECCCcchhHHHHHHHHhhccCCeeEeccc-ccc--------c---h--hhhhhhcccC-------CCccccccC--
Confidence 568889999999999999888877665544432 211 0 0 0011111111 000000000
Q ss_pred hccCCCChhHHHHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
......+....++++++||++.+....+..++..+
T Consensus 111 ----------~~l~~~~~~~~~~vvl~DeieKa~~~V~~~lLqil 145 (315)
T d1r6bx3 111 ----------GLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVM 145 (315)
T ss_dssp ----------THHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHH
T ss_pred ----------ChhhHHHHhCccchhhhcccccccchHhhhhHHhh
Confidence 11223444578899999999999887766666654
No 114
>d1em8a_ c.128.1.1 (A:) DNA polymerase III chi subunit {Escherichia coli [TaxId: 562]}
Probab=87.76 E-value=2 Score=34.43 Aligned_cols=114 Identities=6% Similarity=0.028 Sum_probs=70.1
Q ss_pred HHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHh----CCceE-ecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccc
Q 010184 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKPMI-YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (516)
Q Consensus 256 ~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L----~~~~i-~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDl 330 (516)
+-.|++..- ..|.+++|+|++...++.+-+.| .-.+| ||-.... .. ....|++++.-. -..
T Consensus 25 ~crL~~K~~-~~g~ri~I~~~d~~~~~~lD~~LWt~~~~sFiPH~~~~~~---------~~-~~~PI~l~~~~~---~~~ 90 (147)
T d1em8a_ 25 VCEIAAERW-RSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEG---------PR-GGAPVEIAWPQK---RSS 90 (147)
T ss_dssp HHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHCSTTCCCCEEETTCS---------ST-TCCSEEEECTTS---CCC
T ss_pred HHHHHHHHH-HCCCEEEEEeCCHHHHHHHHHHHhCCCCcccccccccCCC---------cc-CCCCEEecCCCC---CCC
Confidence 334444443 56899999999999999999999 22232 3322110 01 245677776311 223
Q ss_pred cccCEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEcCCchhhhHHHHHHHHHHHcCCceEE
Q 010184 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408 (516)
Q Consensus 331 p~a~~vI~~~~~~~s~~~~~Qr~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~v 408 (516)
+..+++|..++.. + .+.++. . .++.+|..+......++.|=+++.+.||....
T Consensus 91 ~~~dvlinl~~~~--p-~~~~~f---------------------~-Rvieiv~~de~~~~~aR~rwk~yk~~G~~l~~ 143 (147)
T d1em8a_ 91 SRRDILISLRTSF--A-DFATAF---------------------T-EVVDFVPYEDSLKQLARERYKAYRVAGFNLNT 143 (147)
T ss_dssp SCCSEEEECCSSC--C-GGGGGC---------------------S-EEEEEECSSHHHHHHHHHHHHHHHHTTEEEEE
T ss_pred ccceEEEECCCCC--c-hhhhcc---------------------C-EEEEEECcCHHHHHHHHHHHHHHHHCCCCccc
Confidence 4567888875432 1 112211 1 35678887766667889999999999987653
No 115
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}
Probab=87.34 E-value=0.15 Score=42.25 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=20.7
Q ss_pred CcccEEEecCCCcHHHHHHHHHHhc
Q 010184 43 ARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+++.+|.+|.|+|||..+-.++..+
T Consensus 1 ~k~v~ItG~~GtGKTtl~~~i~~~l 25 (189)
T d2i3ba1 1 ARHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 3688999999999999888777554
No 116
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}
Probab=86.52 E-value=0.24 Score=40.83 Aligned_cols=29 Identities=17% Similarity=0.084 Sum_probs=24.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (516)
+.+|.+|+|+|||.++-.++.+++...++
T Consensus 7 ~I~i~G~~GsGKTT~~~~La~~l~~~~~~ 35 (174)
T d1y63a_ 7 NILITGTPGTGKTSMAEMIAAELDGFQHL 35 (174)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSTTEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHhCCCcEE
Confidence 57899999999999999998887654443
No 117
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}
Probab=85.91 E-value=0.25 Score=40.53 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=23.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
+-.+|.+|+|+|||.++-.++..++.+.+
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~~l~~~~~ 35 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 35 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence 45678899999999999998887765443
No 118
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}
Probab=85.01 E-value=0.3 Score=40.75 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=21.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
+.+|.+|+|||||.++-.++.+.+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~~~ 27 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 35788999999999998888877643
No 119
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=84.80 E-value=0.3 Score=40.68 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=21.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
+.+|.+|+|||||.++-.++.+.+-+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~~~~ 27 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAYGIP 27 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 35789999999999999888887644
No 120
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}
Probab=84.75 E-value=0.34 Score=38.86 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=18.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+|++++|+|||.++-.++....
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~~ 27 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKNP 27 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 457889999999998877665543
No 121
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}
Probab=84.72 E-value=0.31 Score=40.79 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=22.8
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
.+|.+|+|||||.++-.++.+.+-+.+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g~~~i 29 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYGTPHI 29 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCcee
Confidence 578899999999999999988865544
No 122
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=84.34 E-value=0.32 Score=40.65 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=22.6
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
+.+|.+|+|||||.++-.++.+.+-..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~g~~~ 28 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQ 28 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCce
Confidence 457889999999999999998886443
No 123
>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}
Probab=84.21 E-value=1.1 Score=39.89 Aligned_cols=55 Identities=15% Similarity=0.041 Sum_probs=35.7
Q ss_pred HHHHHhCC-CCcccEEEecCCCcHHHHHHHHHHh----cCCCEEEEEeChhhHHHHHHHHH
Q 010184 34 LSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFK 89 (516)
Q Consensus 34 l~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~e~~ 89 (516)
++.++.+- ++.-.+|.+++|+|||..++.++.. .+.+++++..--. ..+....+.
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~~-~~~~~~r~~ 84 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDLI 84 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeeccc-hhhHHhHHH
Confidence 55555431 2246788899999999877766533 3678999987644 455444433
No 124
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Probab=84.04 E-value=0.34 Score=41.09 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+.+|.+|+|||||.++-.++.+.+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~g 31 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHFE 31 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHBC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHC
Confidence 668889999999999999998876
No 125
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}
Probab=84.04 E-value=0.23 Score=44.40 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHh----CCC-Ccc----cEEEecCCCcHHHHHHHHHHhc
Q 010184 24 AQPRPYQEKSLSKMFG----NGR-ARS----GIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~----~~~-~~~----~il~~~tG~GKTl~~i~~i~~~ 67 (516)
+.=|+-|.+.+..++. ++. +.+ .++.+|+|+|||.++-.++..+
T Consensus 18 ~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 18 LRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp CSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4557888888766432 221 111 2345999999999998877554
No 126
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=83.94 E-value=0.39 Score=41.79 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=27.3
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
..|..++.++ .+.-.+|.+++|+|||..++.++.+.
T Consensus 21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred HHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3467777653 23467889999999999999988654
No 127
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Probab=83.91 E-value=0.35 Score=40.74 Aligned_cols=30 Identities=30% Similarity=0.294 Sum_probs=23.9
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
+.+|.+|+|||||.++-.++.+.+ +..|.+
T Consensus 5 riil~G~pGSGKsT~a~~La~~~g--~~~i~~ 34 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQAPKLAKNFC--VCHLAT 34 (190)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeEEeH
Confidence 667889999999999999888775 334444
No 128
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}
Probab=83.81 E-value=0.3 Score=41.31 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=21.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
.-.+|.+|+|||||.++-.++.+.+-
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~g~ 32 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDFGW 32 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 45678899999999999888887763
No 129
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.97 E-value=0.36 Score=40.36 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=21.8
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|.+|+|||||.++-.++.+.+-+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~g~~ 29 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERFHAA 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 46788999999999999998887633
No 130
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=82.23 E-value=0.44 Score=40.32 Aligned_cols=26 Identities=15% Similarity=-0.054 Sum_probs=21.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
...+|.+|+|||||.+|-.++.+.+-
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~ 34 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSF 34 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35677899999999999999888754
No 131
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=82.08 E-value=0.39 Score=40.43 Aligned_cols=27 Identities=11% Similarity=-0.027 Sum_probs=22.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
..+|.+|+|+|||.++-.++.+.+-+.
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~~~~ 31 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQLAH 31 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcE
Confidence 578899999999999988887776443
No 132
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}
Probab=81.28 E-value=0.64 Score=39.62 Aligned_cols=31 Identities=6% Similarity=-0.018 Sum_probs=23.1
Q ss_pred cccEEEec-CCCcHHHHHHHHH---HhcCCCEEEE
Q 010184 44 RSGIIVLP-CGAGKSLVGVSAA---CRIKKSCLCL 74 (516)
Q Consensus 44 ~~~il~~~-tG~GKTl~~i~~i---~~~~~~~Lvl 74 (516)
++..|++- ||.|||.+++.++ ++.+++++++
T Consensus 2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~i 36 (224)
T d1byia_ 2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY 36 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 35566766 7999999988766 4456788886
No 133
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=80.65 E-value=0.5 Score=39.79 Aligned_cols=30 Identities=17% Similarity=0.058 Sum_probs=23.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
-.+|.+|+|||||.+|-.++.+.+- ..|.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~g~--~~i~~ 32 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKYGY--THLSA 32 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC--EEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC--ceEcH
Confidence 3578899999999999988887753 44443
No 134
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=80.61 E-value=0.61 Score=39.32 Aligned_cols=30 Identities=20% Similarity=0.066 Sum_probs=23.7
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
-.+|.+|+|||||.++-.++.+.+ +..|.+
T Consensus 10 iI~l~G~pGSGKsT~a~~La~~~g--~~~is~ 39 (194)
T d3adka_ 10 IIFVVGGPGSGKGTQCEKIVQKYG--YTHLST 39 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTC--CEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CeeEec
Confidence 567889999999999999888775 344554
No 135
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}
Probab=80.10 E-value=1.4 Score=39.10 Aligned_cols=47 Identities=23% Similarity=0.389 Sum_probs=33.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc-------------CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-------------~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
.-++|++++|+|||..++.++..+ +.+++++.--- -..++...+..+
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~-~~~~~~~Rl~~~ 89 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED-PPTAIHHRLHAL 89 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS-CHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc-hHHHHHHHHHHH
Confidence 377899999999999888766432 24688877544 356666666655
No 136
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=79.77 E-value=0.52 Score=38.58 Aligned_cols=23 Identities=9% Similarity=0.092 Sum_probs=18.9
Q ss_pred cEEEecCCCcHHHHHHHHHHhcC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..|.+++|+|||.+|-.++.++.
T Consensus 9 I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 9 IFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 34779999999999988887653
No 137
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}
Probab=79.48 E-value=0.86 Score=43.62 Aligned_cols=37 Identities=19% Similarity=0.115 Sum_probs=27.5
Q ss_pred cccEEEecCCCcHHHHHHHHHH---hcCCCEEEEEeChhh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVS 80 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L 80 (516)
++.+|.++||+|||.....++. ..+.+++|+=|..++
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~kge~ 90 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 90 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeCChhH
Confidence 4789999999999987544443 345688888887664
No 138
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=77.70 E-value=0.89 Score=38.72 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCCccc-EEEecCCCcHHHHHHHHHHhcC
Q 010184 32 KSLSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 32 ~al~~~~~~~~~~~~-il~~~tG~GKTl~~i~~i~~~~ 68 (516)
.++..++.+...+++ ++.+|.++|||+.+.+++..++
T Consensus 41 ~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~ 78 (205)
T d1tuea_ 41 GALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQ 78 (205)
T ss_dssp HHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence 556667766544455 6679999999999887775543
No 139
>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}
Probab=76.29 E-value=1.2 Score=36.34 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=30.9
Q ss_pred HHHHccCCccEEEEccCccCCc------hhHHHHHhhcccceEEEEeccCC
Q 010184 138 IEEIRNREWGLLLMDEVHVVPA------HMFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 138 ~~~l~~~~~~~vIlDEaH~~~~------~~~~~~l~~~~~~~~l~LTATp~ 182 (516)
...+....+++||+||+-...+ .....++..-+...-+.|||--.
T Consensus 87 ~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~ 137 (157)
T d1g5ta_ 87 KRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 137 (157)
T ss_dssp HHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 3456678899999999976543 34445555555666799998744
No 140
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=75.83 E-value=1 Score=37.68 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=21.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (516)
|..+|++|.|+|||-++-.++.....
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~ 27 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCc
Confidence 46799999999999988877776553
No 141
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}
Probab=75.15 E-value=0.88 Score=38.99 Aligned_cols=23 Identities=30% Similarity=0.205 Sum_probs=20.0
Q ss_pred EEecCCCcHHHHHHHHHHhcCCC
Q 010184 48 IVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
|.+|.|+|||.+|-.++.+.+-+
T Consensus 8 IdGp~GsGKgT~ak~La~~lg~~ 30 (223)
T d1q3ta_ 8 IDGPASSGKSTVAKIIAKDFGFT 30 (223)
T ss_dssp EECSSCSSHHHHHHHHHHHHCCE
T ss_pred EECCCCCCHHHHHHHHHHHhCCc
Confidence 44999999999999999988744
No 142
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=74.28 E-value=1 Score=37.84 Aligned_cols=26 Identities=23% Similarity=0.150 Sum_probs=21.2
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
..+|++|.|+|||-++-.++......
T Consensus 2 pIvl~GPsGsGK~tl~~~L~~~~~~~ 27 (190)
T d1lvga_ 2 PVVLSGPSGAGKSTLLKKLFQEHSSI 27 (190)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 47899999999999988777766544
No 143
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Probab=74.23 E-value=0.95 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.243 Sum_probs=20.7
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCE
Q 010184 47 IIVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
.|.+|+|||||.++-.++.+.+-+.
T Consensus 7 ~I~GppGSGKgT~ak~La~~~gl~~ 31 (225)
T d1ckea_ 7 TIDGPSGAGKGTLCKAMAEALQWHL 31 (225)
T ss_dssp EEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcE
Confidence 4559999999999999999886433
No 144
>d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=73.51 E-value=3.5 Score=35.09 Aligned_cols=89 Identities=10% Similarity=0.047 Sum_probs=64.0
Q ss_pred HhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHH
Q 010184 65 CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESE 135 (516)
Q Consensus 65 ~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~ 135 (516)
...++.+.||||...-++.....+.+. ++..+|...+|..+.. ..+..+|+|+|-=.=..
T Consensus 28 l~rGgQvy~V~p~I~~~e~~~~~l~~~--~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvG--------- 96 (211)
T d2eyqa5 28 ILRGGQVYYLYNDVENIQKAAERLAEL--VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETG--------- 96 (211)
T ss_dssp HTTTCEEEEECCCSSCHHHHHHHHHHH--CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGG---------
T ss_pred HHcCCeEEEEEcCccchhhHHHHHHHh--CCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhc---------
Confidence 334689999999998899899989887 5677899999986532 24789999999521111
Q ss_pred HHHHHHccCCccEEEEccCccCCchhHHHHHhhc
Q 010184 136 KIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (516)
Q Consensus 136 ~~~~~l~~~~~~~vIlDEaH~~~~~~~~~~l~~~ 169 (516)
+.-.+-.++|+..|+++.-.....+-..+
T Consensus 97 -----iDvpnA~~iiI~~a~rfGLaQLhQLRGRV 125 (211)
T d2eyqa5 97 -----IDIPTANTIIIERADHFGLAQLHQLRGRV 125 (211)
T ss_dssp -----SCCTTEEEEEETTTTSSCHHHHHHHHTTC
T ss_pred -----cCCCCCcEEEEecchhcccccccccccee
Confidence 11144568999999999876655554443
No 145
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}
Probab=71.44 E-value=0.95 Score=37.11 Aligned_cols=31 Identities=10% Similarity=0.055 Sum_probs=23.1
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC---CCEEEEE
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA 75 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~ 75 (516)
-.+|.+++|+|||.++-.++..++ .++.++.
T Consensus 3 iI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 36 (190)
T d1khta_ 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 36 (190)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEe
Confidence 467889999999999888776543 4555554
No 146
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=70.24 E-value=6 Score=35.75 Aligned_cols=69 Identities=9% Similarity=0.036 Sum_probs=47.5
Q ss_pred HHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcc---------------------ccccCCCc
Q 010184 57 SLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK---------------------ERFRGNAG 115 (516)
Q Consensus 57 Tl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~---------------------~~~~~~~~ 115 (516)
.+....++.+..+|+|||||....+.++.+++..|.+ ..|..|-+-.. ....+...
T Consensus 3 a~~~a~~~~~~~~p~lvv~~~~~~A~~l~~~L~~~~~---~~v~~fP~~e~lpyd~~s~~~~i~~~R~~~L~~l~~~~~~ 79 (308)
T d2b2na1 3 ATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTD---QMVMNLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG 79 (308)
T ss_dssp HHHHHHHHHHCSSCEEEEESSHHHHHHHHHHHHTTCS---SCEEECCCCCSCTTCSSCCCHHHHHHHHHHHHHGGGCCSS
T ss_pred HHHHHHHHHhhCCCEEEEcCCHHHHHHHHHHHHhcCC---CceEEcCCcccCccccCCCChHHHHHHHHHHHHHhhcCCc
Confidence 3444455567789999999999999999999987743 24555532210 01235678
Q ss_pred EEEEchhhhhccC
Q 010184 116 VVVTTYNMVAFGG 128 (516)
Q Consensus 116 IvV~T~~~l~~~~ 128 (516)
|+|||...+....
T Consensus 80 iiits~~al~~~~ 92 (308)
T d2b2na1 80 VLIVPVNTLMQRV 92 (308)
T ss_dssp EEEEEHHHHTBCC
T ss_pred eEEeechhhhhhc
Confidence 9999998886643
No 147
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}
Probab=70.22 E-value=0.68 Score=37.90 Aligned_cols=37 Identities=16% Similarity=0.029 Sum_probs=29.4
Q ss_pred cEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHH
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVD 82 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~ 82 (516)
..|.++.|+|||.-+=.++..++.+--|-.||=.|+.
T Consensus 36 i~L~G~LGaGKTtfvr~~~~~lg~~~~V~SPTF~l~~ 72 (158)
T d1htwa_ 36 VYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVE 72 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEE
T ss_pred EEEecCCCccHHHHHHHHHhhcccccccCCCceEEEE
Confidence 4467999999999988888888766667788877654
No 148
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}
Probab=69.99 E-value=2.3 Score=34.99 Aligned_cols=20 Identities=15% Similarity=0.086 Sum_probs=16.6
Q ss_pred EEecCCCcHHHHHHHHHHhc
Q 010184 48 IVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~ 67 (516)
|.+|+|||||.++-.+....
T Consensus 27 I~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 27 IDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEECTTSSHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHh
Confidence 67999999999988776554
No 149
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=69.79 E-value=2 Score=37.56 Aligned_cols=47 Identities=17% Similarity=0.084 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEE
Q 010184 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (516)
-=|....+-+.. . ..+..+|.+|.|+|||-....++...+..+.++.
T Consensus 15 ~GR~~el~~l~~---~-~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~ 61 (283)
T d2fnaa2 15 FDREKEIEKLKG---L-RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLD 61 (283)
T ss_dssp CCCHHHHHHHHH---T-CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CChHHHHHHHHh---c-cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEE
Confidence 345544444433 2 2246778899999999998888877777666654
No 150
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=69.63 E-value=1.3 Score=36.56 Aligned_cols=22 Identities=27% Similarity=0.040 Sum_probs=16.8
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.-.++++++|||||..+-.++.
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3568889999999987755543
No 151
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Probab=69.39 E-value=0.68 Score=38.60 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=17.6
Q ss_pred EEecCCCcHHHHHHHHHHhcC
Q 010184 48 IVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~ 68 (516)
|.+++|+|||.+|-.++..++
T Consensus 24 L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 24 LTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp EESSCHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHHHHHHH
Confidence 569999999999988876653
No 152
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}
Probab=69.16 E-value=2.3 Score=34.12 Aligned_cols=34 Identities=9% Similarity=-0.123 Sum_probs=25.3
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc---CCCEEEEEeCh
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~ 78 (516)
-..|+++.|||||..+-.++..+ +.++.++....
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~ 40 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 40 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccc
Confidence 35788999999999888877553 45677776543
No 153
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
Probab=67.68 E-value=1.3 Score=36.52 Aligned_cols=31 Identities=23% Similarity=0.133 Sum_probs=23.2
Q ss_pred cEEEecCCCcHHHHHHHHHHhcC---CCEEEEEe
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIK---KSCLCLAT 76 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~P 76 (516)
.+|.++.|+|||.++-.++..++ .++.++.+
T Consensus 4 ivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~ 37 (194)
T d1nksa_ 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY 37 (194)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 46789999999999888776653 45666654
No 154
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=67.50 E-value=2.9 Score=39.92 Aligned_cols=48 Identities=13% Similarity=0.149 Sum_probs=34.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc---------------CCCEEEEEeChhhHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI---------------KKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---------------~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+..+|.+.-|+|||.+...-+..+ ...+|+|+=|+.-+...++.+...
T Consensus 17 g~~lv~A~AGsGKT~~l~~r~~~ll~~~~~~~~~~~~~~~~~IL~lTFT~kAA~Emk~RI~~~ 79 (485)
T d1w36b1 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (485)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCeEEEEcCchHHHHHHHHHHHHHHhhCcccccccCCCCcccEeEeccHHHHHHHHHHHHHHH
Confidence 378999999999998776533221 034999998887677777666544
No 155
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=66.05 E-value=5.2 Score=35.75 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=20.1
Q ss_pred HHHHHhCCCCcccE--EEecCCCcHHHHHHHHH
Q 010184 34 LSKMFGNGRARSGI--IVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 34 l~~~~~~~~~~~~i--l~~~tG~GKTl~~i~~i 64 (516)
+..++..+..+..| |++++|+|||..+..++
T Consensus 16 ~~~~~~~~~~~P~iIGi~G~qGSGKSTl~~~l~ 48 (286)
T d1odfa_ 16 IPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIY 48 (286)
T ss_dssp HHHHHTTTCCSCEEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeECCCCCCHHHHHHHHH
Confidence 45556554433444 46999999997775544
No 156
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=63.31 E-value=3.4 Score=36.64 Aligned_cols=35 Identities=17% Similarity=0.153 Sum_probs=26.5
Q ss_pred CCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
+.++-.++.+-=|.|||.++..++ ++.++++|+|-
T Consensus 6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD 43 (296)
T d1ihua1 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (296)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence 345666777888999999988766 34568888876
No 157
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=62.86 E-value=2 Score=36.39 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=17.7
Q ss_pred EEEecCCCcHHHHHHHHHHhcC
Q 010184 47 IIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-|.+++|||||.++-.+...++
T Consensus 6 gI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 6 GVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEECSTTSSHHHHHHHHHHHTT
T ss_pred EEECCCCCCHHHHHHHHHHHhc
Confidence 3679999999999877776654
No 158
>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}
Probab=62.35 E-value=4.5 Score=36.20 Aligned_cols=42 Identities=29% Similarity=0.354 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHhc
Q 010184 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
.-+.=.++|..++--+++....|.++.|+|||.....++...
T Consensus 26 ~~~~~~r~ID~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 26 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp STHHHHHHHHHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cccccceeeeecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 334555788877665555689999999999999887776543
No 159
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=62.27 E-value=2.1 Score=35.29 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=19.2
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+-.+|++|.|+|||.++-.++....
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3568899999999998766665543
No 160
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Probab=61.52 E-value=5.6 Score=33.58 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=23.9
Q ss_pred HhCCCCcccEEEecCCCcHHHHHHHHHHhc----CCCEEEEE
Q 010184 38 FGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (516)
Q Consensus 38 ~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~ 75 (516)
+.++.+.-..+.+.+|+|||..+-.+..++ +.+++++-
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ld 60 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 60 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEc
Confidence 333332345566999999999887776543 34555553
No 161
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}
Probab=61.24 E-value=2.8 Score=34.62 Aligned_cols=25 Identities=8% Similarity=0.198 Sum_probs=20.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
+..+|++|.|+|||-+.-.++....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~ 28 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCC
Confidence 5688999999999999877776544
No 162
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}
Probab=57.73 E-value=7.5 Score=33.96 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=24.8
Q ss_pred CCCCcccEEEecCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 40 NGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 40 ~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
.+.++-.++.+-=|.|||.++..++ +..++++|+|=
T Consensus 17 ~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD 55 (279)
T d1ihua2 17 RNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT 55 (279)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3333455666889999999987765 34467777664
No 163
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}
Probab=57.47 E-value=2.1 Score=39.22 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=20.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcC
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
++.+|.+|+|+|||..+=.++.-+.
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp 53 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLP 53 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCC
Confidence 3789999999999999877775543
No 164
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=56.83 E-value=2.7 Score=34.77 Aligned_cols=23 Identities=17% Similarity=0.179 Sum_probs=19.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
...+|.++.|+|||.+++.++.+
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46788899999999999888754
No 165
>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=56.66 E-value=2.8 Score=34.97 Aligned_cols=30 Identities=10% Similarity=-0.002 Sum_probs=22.8
Q ss_pred cEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
.++++.+|+|||..+-.++..+ +.++-++.
T Consensus 5 i~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~ 37 (213)
T d1bifa1 5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFN 37 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEc
Confidence 4778999999999998877544 45666664
No 166
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}
Probab=55.77 E-value=3.9 Score=41.74 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=29.3
Q ss_pred CCCHHH--HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQ--EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ--~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.|..|. ..|...|+..++....||.++.|+|||..+=.++
T Consensus 105 ~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il 146 (712)
T d1d0xa2 105 APHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 146 (712)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHH
Confidence 355554 3677788876665688999999999998765544
No 167
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}
Probab=54.68 E-value=4.1 Score=41.75 Aligned_cols=40 Identities=28% Similarity=0.384 Sum_probs=29.7
Q ss_pred CCCHHH--HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQ--EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ--~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.|..|. ..|+..|+..++.-..||.++.|+|||..+=.++
T Consensus 74 ~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il 115 (730)
T d1w7ja2 74 DPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 115 (730)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 455554 4677888877666688899999999998765554
No 168
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=54.53 E-value=17 Score=30.80 Aligned_cols=86 Identities=12% Similarity=0.133 Sum_probs=52.7
Q ss_pred cchHHHHHHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC-------C------ceEecCCCHHHHHHHHHHHhcCCCcc
Q 010184 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------K------PMIYGATSHVERTKILQAFKCSRDLN 316 (516)
Q Consensus 250 ~~k~~~~~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~-------~------~~i~g~~~~~eR~~~l~~F~~~~~~~ 316 (516)
.+|-......+.... .++.++||.++++.-+...++.+. . ...++..+..++.+.+.... ...
T Consensus 69 sGKT~~~~~~~~~~~-~~~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~ 144 (237)
T d1gkub1 69 VGKTSFGLAMSLFLA-LKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLR---NFK 144 (237)
T ss_dssp SCSHHHHHHHHHHHH-TTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGG---GCS
T ss_pred ChHHHHHHHHHHHHH-HhcCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEEEeeeecccchhhhhhhhcccc---ccc
Confidence 356543333333333 567899999999988877776651 1 12456666666666655443 357
Q ss_pred EEEEeC-CCcc-cccccccCEEEEe
Q 010184 317 TIFLSK-VGDN-SIDIPEANVIIQI 339 (516)
Q Consensus 317 vLv~t~-~~~~-GlDlp~a~~vI~~ 339 (516)
+||+|. .+.. -.++...++||+.
T Consensus 145 Ilv~Tp~~l~~~~~~~~~~~~vVvD 169 (237)
T d1gkub1 145 IVITTTQFLSKHYRELGHFDFIFVD 169 (237)
T ss_dssp EEEEEHHHHHHCSTTSCCCSEEEES
T ss_pred eeccChHHHHHhhhhcCCCCEEEEE
Confidence 888883 3222 2456778888875
No 169
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=54.10 E-value=4.3 Score=41.45 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=29.4
Q ss_pred CCCHHH--HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQ--EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ--~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.|..|. ..|+..|+..++....||.++.|+|||..+=.++
T Consensus 71 ~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il 112 (710)
T d1br2a2 71 PPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 112 (710)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 345554 4677888877655688999999999998765544
No 170
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}
Probab=53.70 E-value=4.4 Score=41.11 Aligned_cols=40 Identities=23% Similarity=0.230 Sum_probs=30.1
Q ss_pred CCCHHHH--HHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQE--KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ~--~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.|..|.. .|+..|...++....|+.++.|+|||..+=.++
T Consensus 66 ~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il 107 (684)
T d1lkxa_ 66 PPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIM 107 (684)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHH
Confidence 4555554 777888877665688999999999998875554
No 171
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=53.40 E-value=4.5 Score=41.82 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=29.6
Q ss_pred CCCHHH--HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQ--EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ--~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.|..|- ..|+..|+..++.-+.|+.++.|+|||..+=.++
T Consensus 103 pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il 144 (794)
T d2mysa2 103 PPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVI 144 (794)
T ss_dssp CSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 455554 3778888877666688999999999998765443
No 172
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.78 E-value=8 Score=32.62 Aligned_cols=30 Identities=13% Similarity=0.027 Sum_probs=22.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (516)
+-.++.++-|+|||.++-.+...+...+.+
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~~~~~~ 33 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQPNCKL 33 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTTTSEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhCCEE
Confidence 345667999999999998888777655433
No 173
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=51.94 E-value=4.2 Score=33.29 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=19.5
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
...+|.++.|+|||.+++.++.+
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 46788899999999988887765
No 174
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}
Probab=51.85 E-value=4.1 Score=33.64 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=19.4
Q ss_pred cccEEEecCCCcHHHHHHHHHHh
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
+..+|.++.|+|||-+++.++..
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 46788899999999999887764
No 175
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}
Probab=50.33 E-value=4.5 Score=41.81 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=29.2
Q ss_pred CCCHHH--HHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHH
Q 010184 25 QPRPYQ--EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 25 ~Lr~yQ--~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (516)
.|..|- ..|+..|+..++....||.++.|+|||..+=.++
T Consensus 101 ~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il 142 (789)
T d1kk8a2 101 PPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 142 (789)
T ss_dssp CCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 355554 4778888877655688999999999997754443
No 176
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}
Probab=50.01 E-value=6.4 Score=31.44 Aligned_cols=31 Identities=10% Similarity=-0.119 Sum_probs=22.6
Q ss_pred EEEecCCCcHHHHHHHHHHhc---CCCEEEEEeC
Q 010184 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCLATN 77 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~ 77 (516)
.|++..|||||...-.++..+ +.++-++...
T Consensus 5 ~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d 38 (165)
T d1xjca_ 5 QVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 38 (165)
T ss_dssp EEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEec
Confidence 478999999999887776543 4566666543
No 177
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=49.34 E-value=5.6 Score=36.83 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=13.7
Q ss_pred ccEEE-ecCCCcHHHHHHH
Q 010184 45 SGIIV-LPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~-~~tG~GKTl~~i~ 62 (516)
.+|++ ++||+|||.+...
T Consensus 115 ~tifaYGqTGSGKTyTm~G 133 (362)
T d1v8ka_ 115 ATCFAYGQTGSGKTHTMGG 133 (362)
T ss_dssp EEEEEEESTTSSHHHHHHC
T ss_pred ceEEeeccCCCCCceeeee
Confidence 34444 8999999999764
No 178
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Probab=48.14 E-value=15 Score=32.12 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=26.4
Q ss_pred CCCHHHHHHHHHHHhCC-CCccc-EEEecCCCcHHHHHHHHHHhc
Q 010184 25 QPRPYQEKSLSKMFGNG-RARSG-IIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~-~~~~~-il~~~tG~GKTl~~i~~i~~~ 67 (516)
.+..++. ++..++.++ ..+++ ++.+|.++|||..+-+++..+
T Consensus 85 ~~~~f~~-~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 85 DPQYAAS-VFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp CHHHHHH-HHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CHHHHHH-HHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3344443 566677543 23344 677999999999876666443
No 179
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=48.09 E-value=4.8 Score=36.74 Aligned_cols=18 Identities=17% Similarity=0.244 Sum_probs=13.6
Q ss_pred ccEEE-ecCCCcHHHHHHH
Q 010184 45 SGIIV-LPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~-~~tG~GKTl~~i~ 62 (516)
.+|++ +.||+|||.+...
T Consensus 86 ~~i~aYGqTGSGKTyTm~G 104 (330)
T d1ry6a_ 86 CSCFAYGQTGSGKTYTMLG 104 (330)
T ss_dssp EEEEEECCTTSSHHHHHHB
T ss_pred eEEEeeeccccccceeeec
Confidence 33444 8999999999764
No 180
>d2eyqa2 c.37.1.19 (A:349-465) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}
Probab=47.84 E-value=8 Score=29.27 Aligned_cols=70 Identities=7% Similarity=-0.039 Sum_probs=46.8
Q ss_pred HHHHHHHhhcCCCeEEEEeccHHHHHHHHHHhC---Cce-EecCCCHHHHHHHHHHHhcCCCccEEEEeCCCcccccccc
Q 010184 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---KPM-IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (516)
Q Consensus 257 ~~ll~~~~~~~~~k~iVF~~~~~~~~~l~~~L~---~~~-i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~~GlDlp~ 332 (516)
..|..+.. ..+.++|+.|.+....+.+.+.|. +.. ...+. ..|.++ .+-++...+..|+-+|+
T Consensus 24 ~~L~~~i~-~~~~~Vli~a~s~g~~erl~e~L~~~~i~~~~~~~~---------~~~~~~---~~~i~~~~l~~GF~~~~ 90 (117)
T d2eyqa2 24 DALRKFLE-TFDGPVVFSVESEGRREALGELLARIKIAPQRIMRL---------DEASDR---GRYLMIGAAEHGFVDTV 90 (117)
T ss_dssp HHHHHHHT-TCCSCCCEEESSHHHHHHHHHHHGGGTCCCEECSSG---------GGCCTT---CCEEEECCCCSCEEETT
T ss_pred HHHHHHHH-hCCCeEEEEECCccHHHHHHHHHHHcCCCceEecCh---------hhhcCc---eEEEEEecCccccccCC
Confidence 33445554 446689999999999999999994 222 11111 123333 34556677899999999
Q ss_pred cCEEEEe
Q 010184 333 ANVIIQI 339 (516)
Q Consensus 333 a~~vI~~ 339 (516)
.+.+|+.
T Consensus 91 ~~l~vIt 97 (117)
T d2eyqa2 91 RNLALIC 97 (117)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9988875
No 181
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=46.39 E-value=3.5 Score=34.10 Aligned_cols=26 Identities=15% Similarity=-0.036 Sum_probs=19.4
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcCCC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
-.+|.|+.|+|||.++-.+.......
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~~~ 36 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKNDI 36 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 35667999999998887766666543
No 182
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=45.69 E-value=7 Score=35.45 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=13.8
Q ss_pred ccEEEecCCCcHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (516)
..+..++||+|||.+...
T Consensus 78 ~i~aYGqtgSGKTyT~~G 95 (323)
T d1bg2a_ 78 TIFAYGQTSSGKTHTMEG 95 (323)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred ceeeecccCCCCceeccC
Confidence 444559999999998754
No 183
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}
Probab=43.36 E-value=8 Score=34.85 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=16.5
Q ss_pred EEEecCCCcHHHHHHHHHHhc
Q 010184 47 IIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~ 67 (516)
-|+++.|+|||..+-.+...+
T Consensus 84 GIaG~sgSGKSTla~~L~~lL 104 (308)
T d1sq5a_ 84 SIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEECTTSSHHHHHHHHHHHH
T ss_pred EEeCCCCCCCcHHHHHHHHHH
Confidence 467999999999887766544
No 184
>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}
Probab=43.21 E-value=7.2 Score=32.70 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=16.4
Q ss_pred EEecCCCcHHHHHHHHHHhcCCC
Q 010184 48 IVLPCGAGKSLVGVSAACRIKKS 70 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~~~ 70 (516)
|.++.|||||.++=.+ ...+-+
T Consensus 8 itG~igSGKStv~~~l-~~~G~~ 29 (208)
T d1vhta_ 8 LTGGIGSGKSTVANAF-ADLGIN 29 (208)
T ss_dssp EECCTTSCHHHHHHHH-HHTTCE
T ss_pred EECCCcCCHHHHHHHH-HHCCCc
Confidence 6899999999988654 455543
No 185
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}
Probab=42.85 E-value=8.4 Score=31.45 Aligned_cols=23 Identities=26% Similarity=0.143 Sum_probs=16.7
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCE
Q 010184 48 IVLPCGAGKSLVGVSAACRIKKSC 71 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~~~~ 71 (516)
|+++.|||||.++=.+ ...+-++
T Consensus 8 itG~~gSGKstva~~l-~~~g~~~ 30 (191)
T d1uf9a_ 8 ITGNIGSGKSTVAALL-RSWGYPV 30 (191)
T ss_dssp EEECTTSCHHHHHHHH-HHTTCCE
T ss_pred EECCCCCCHHHHHHHH-HHCCCeE
Confidence 5699999999987655 4555444
No 186
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=42.62 E-value=7 Score=35.99 Aligned_cols=17 Identities=29% Similarity=0.202 Sum_probs=13.0
Q ss_pred cEEEecCCCcHHHHHHH
Q 010184 46 GIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~ 62 (516)
.+..++||+|||.+...
T Consensus 83 i~aYG~tgSGKT~Tm~G 99 (354)
T d1goja_ 83 VFAYGQTGAGKSYTMMG 99 (354)
T ss_dssp EEEECSTTSSHHHHHTB
T ss_pred EEecccCCCCcceeeec
Confidence 34449999999998754
No 187
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=42.30 E-value=7.3 Score=36.02 Aligned_cols=27 Identities=15% Similarity=0.124 Sum_probs=17.1
Q ss_pred HHHHHhCCCCcccEE-EecCCCcHHHHHHH
Q 010184 34 LSKMFGNGRARSGII-VLPCGAGKSLVGVS 62 (516)
Q Consensus 34 l~~~~~~~~~~~~il-~~~tG~GKTl~~i~ 62 (516)
+..++++. ..+|+ .++||+|||.+...
T Consensus 67 v~~~l~G~--n~~i~aYGqTGSGKTyTm~G 94 (364)
T d1sdma_ 67 VQSAVDGY--NVCIFAYGQTGSGKTFTIYG 94 (364)
T ss_dssp HHHHHTTC--EEEEEEECSTTSSHHHHHTB
T ss_pred HHHHhcCC--ceeeeccccCCCCccccccc
Confidence 44445443 23444 48999999998753
No 188
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.11 E-value=11 Score=31.95 Aligned_cols=29 Identities=17% Similarity=-0.091 Sum_probs=22.6
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
+-.+|-|+.|+|||.++-.+...+....+
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~~~i 31 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence 45678899999999998887777665443
No 189
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}
Probab=41.56 E-value=9.6 Score=31.92 Aligned_cols=24 Identities=29% Similarity=0.202 Sum_probs=19.5
Q ss_pred ccEEEecCCCcHHHHHHHHHHhcC
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
-.+|++|.|+|||-+.-.++....
T Consensus 4 livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 4 LYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 568889999999998877776654
No 190
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}
Probab=41.20 E-value=8.7 Score=31.99 Aligned_cols=24 Identities=13% Similarity=0.145 Sum_probs=17.2
Q ss_pred EEecCCCcHHHHHHHHHHhcCCCEE
Q 010184 48 IVLPCGAGKSLVGVSAACRIKKSCL 72 (516)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~~~~L 72 (516)
|.++.|||||.++-.+ ...+-+++
T Consensus 7 ITG~igSGKStv~~~l-~~~G~~vi 30 (205)
T d1jjva_ 7 LTGGIGSGKTTIANLF-TDLGVPLV 30 (205)
T ss_dssp EECSTTSCHHHHHHHH-HTTTCCEE
T ss_pred EECCCCCCHHHHHHHH-HHCCCeEE
Confidence 6899999999887544 45554543
No 191
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=41.05 E-value=47 Score=27.14 Aligned_cols=75 Identities=16% Similarity=0.212 Sum_probs=51.5
Q ss_pred HHHHhhcCCCeEEEEeccHHHHHHHHHHh---------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC-----C-
Q 010184 260 IRFHEQQRGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV-----G- 324 (516)
Q Consensus 260 l~~~~~~~~~k~iVF~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~-----~- 324 (516)
+......++.+++|.+++.+.+..+...+ ++...+|..+..+..+.+ + ..++||+|.- +
T Consensus 64 ~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l---~---~~~IlV~TP~~l~~~l~ 137 (208)
T d1hv8a1 64 IELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL---K---NANIVVGTPGRILDHIN 137 (208)
T ss_dssp HHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH---H---TCSEEEECHHHHHHHHH
T ss_pred ccccccccCcceEEEeeccccchhhhhhhhhhcccCCeEEEEeeCCCChHHHHHhc---C---CCCEEEEChHHHHHHHH
Confidence 33333366779999999999988876665 234577887766655443 2 3579999831 2
Q ss_pred cccccccccCEEEEec
Q 010184 325 DNSIDIPEANVIIQIS 340 (516)
Q Consensus 325 ~~GlDlp~a~~vI~~~ 340 (516)
...+++..+.++|+..
T Consensus 138 ~~~~~~~~l~~lViDE 153 (208)
T d1hv8a1 138 RGTLNLKNVKYFILDE 153 (208)
T ss_dssp TTCSCTTSCCEEEEET
T ss_pred cCCCCcccCcEEEEEC
Confidence 3457889999998863
No 192
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=41.02 E-value=8.6 Score=35.16 Aligned_cols=16 Identities=19% Similarity=0.098 Sum_probs=12.6
Q ss_pred cEEEecCCCcHHHHHH
Q 010184 46 GIIVLPCGAGKSLVGV 61 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (516)
.+..++||+|||.+..
T Consensus 84 i~aYGqtgSGKTyTm~ 99 (345)
T d1x88a1 84 IFAYGQTGTGKTFTME 99 (345)
T ss_dssp EEEEECTTSSHHHHHT
T ss_pred EEeeeeccccceEEee
Confidence 3445999999999865
No 193
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}
Probab=40.95 E-value=11 Score=31.89 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=20.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhc--CCCEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI--KKSCLCL 74 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl 74 (516)
.++.++.|+|||...-.+.... ++.+.+|
T Consensus 3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~iv 33 (244)
T d1yrba1 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYV 33 (244)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTTTSCEEEE
T ss_pred EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEE
Confidence 4678999999998766665433 3455555
No 194
>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=40.43 E-value=68 Score=24.31 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=40.2
Q ss_pred cCCCeEEEEe-ccHHHHHHHHHHhCCceEecCCCHHHHHHHHHHHhcC
Q 010184 266 QRGDKIIVFA-DNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCS 312 (516)
Q Consensus 266 ~~~~k~iVF~-~~~~~~~~l~~~L~~~~i~g~~~~~eR~~~l~~F~~~ 312 (516)
..|-++.+.+ ++...+..+++.|+...++++++++++...+++++.+
T Consensus 35 ~~Gi~v~ilTGD~~~~a~~ia~~lgI~~v~~~~~p~~k~~~v~~~q~~ 82 (135)
T d2b8ea1 35 RMGIKVGMITGDNWRSAEAISRELNLDLVIAEVLPHQKSEEVKKLQAK 82 (135)
T ss_dssp HTTCEEEEECSSCHHHHHHHHHHHTCSEEECSCCHHHHHHHHHHHTTT
T ss_pred HcCCEEEEEcCcchhhhhHHHhhhhhhhhccccchhHHHHHHHHHHcC
Confidence 4566666654 6677899999999999999999999999999999987
No 195
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=40.25 E-value=7.8 Score=35.88 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=16.7
Q ss_pred HHHHHhCCCCcccEEEecCCCcHHHHHH
Q 010184 34 LSKMFGNGRARSGIIVLPCGAGKSLVGV 61 (516)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i 61 (516)
+..++++. ....+..++||+|||.+..
T Consensus 117 v~~vl~G~-n~ti~aYGqtGSGKT~Tm~ 143 (368)
T d2ncda_ 117 IQSALDGY-NICIFAYGQTGSGKTYTMD 143 (368)
T ss_dssp HHHHHTTC-EEEEEEECSTTSSHHHHHT
T ss_pred HHHHhccc-ceeEEeeccCCCccceEec
Confidence 44455443 1233444899999998864
No 196
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}
Probab=40.06 E-value=34 Score=27.62 Aligned_cols=51 Identities=6% Similarity=-0.087 Sum_probs=37.8
Q ss_pred cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCCcEEEEch
Q 010184 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTY 121 (516)
Q Consensus 67 ~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~ 121 (516)
.+.++||.|+++.-++.....|.+. +..+..++|+.... ..+..+|+|+|-
T Consensus 30 ~g~r~lvfc~t~~~~~~l~~~L~~~----Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~ 89 (174)
T d1c4oa2 30 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN 89 (174)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC
T ss_pred cCCcEEEEEcchhHHHHHHHHHHhc----CCceEEEecccchHHHHHHHHHHHCCCeEEEEeee
Confidence 3578999999999777766666664 34678889886532 147788999885
No 197
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=39.48 E-value=8.8 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=12.9
Q ss_pred cEEEecCCCcHHHHHHH
Q 010184 46 GIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~ 62 (516)
.+..++||+|||.+.+.
T Consensus 90 i~aYGqTgSGKT~Tm~G 106 (349)
T d2zfia1 90 IFAYGQTGAGKSYTMMG 106 (349)
T ss_dssp EEEECSTTSSHHHHHTB
T ss_pred eeeeccCCCCCceeecc
Confidence 34449999999998643
No 198
>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=39.37 E-value=10 Score=31.77 Aligned_cols=25 Identities=20% Similarity=0.225 Sum_probs=19.1
Q ss_pred ecCCCcHHHHHHHHH---HhcCCCEEEE
Q 010184 50 LPCGAGKSLVGVSAA---CRIKKSCLCL 74 (516)
Q Consensus 50 ~~tG~GKTl~~i~~i---~~~~~~~Lvl 74 (516)
.--|.|||.++..++ +..+++++++
T Consensus 10 ~kGGvGKTtia~nLA~~la~~g~~Vlli 37 (237)
T d1g3qa_ 10 GKGGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 556999999988766 3456788877
No 199
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}
Probab=38.94 E-value=30 Score=26.60 Aligned_cols=51 Identities=14% Similarity=0.012 Sum_probs=37.2
Q ss_pred cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc--ccCCCcEEEEch
Q 010184 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--FRGNAGVVVTTY 121 (516)
Q Consensus 67 ~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~--~~~~~~IvV~T~ 121 (516)
..+++||.|+++.-+++..+.|... + ..+..++++.... ..+...|+|+|-
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~-G---~~~~~~H~~~~~~~~~~~~~~vlvaTd 86 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVAL-G---INAVAYYRGLDVSVIPTNGDVVVVATD 86 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHH-T---CEEEEECTTCCSCCCTTSSCEEEEESS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhcc-c---cchhhhhccchhhhhhhhhcceeehhH
Confidence 4578999999999888877777664 3 3567777764322 246788999986
No 200
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}
Probab=38.84 E-value=1e+02 Score=26.41 Aligned_cols=99 Identities=15% Similarity=0.126 Sum_probs=64.8
Q ss_pred CCCCHHHHHHHHHHHhCCCCc-ccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010184 24 AQPRPYQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~ 102 (516)
.-|||.=+..+...+...... .-++-..||+| .++++++......-++.+.-+.-+-++.++=.+..++. +|..+
T Consensus 88 lIPRpeTE~lv~~~l~~~~~~~~~vlDlGtGSG--~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~--~v~~~ 163 (274)
T d2b3ta1 88 LIPRPDTECLVEQALARLPEQPCRILDLGTGTG--AIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK--NIHIL 163 (274)
T ss_dssp CCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTS--HHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC--SEEEE
T ss_pred cccccchhhhhhhHhhhhcccccceeeeehhhh--HHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcc--cceee
Confidence 468888777777665532211 22555556666 66777777777777777777666666665544444553 47788
Q ss_pred eCCcccccc-CCCcEEEEchhhhhc
Q 010184 103 TSDSKERFR-GNAGVVVTTYNMVAF 126 (516)
Q Consensus 103 ~~~~~~~~~-~~~~IvV~T~~~l~~ 126 (516)
.++..+.+. ...+++|++|-.+..
T Consensus 164 ~~d~~~~~~~~~fDlIvsNPPYi~~ 188 (274)
T d2b3ta1 164 QSDWFSALAGQQFAMIVSNPPYIDE 188 (274)
T ss_dssp CCSTTGGGTTCCEEEEEECCCCBCT
T ss_pred ecccccccCCCceeEEEecchhhhh
Confidence 887665554 468999999877643
No 201
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}
Probab=36.89 E-value=22 Score=32.09 Aligned_cols=38 Identities=18% Similarity=0.019 Sum_probs=23.8
Q ss_pred CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE--eCh
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA--TNA 78 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~--P~~ 78 (516)
+++...-|.+|+|+|||-..-.++.. .+.++-|++ |++
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss 94 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSS 94 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCce
Confidence 34445677899999999876665533 345554444 554
No 202
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.58 E-value=16 Score=30.39 Aligned_cols=28 Identities=18% Similarity=0.018 Sum_probs=19.8
Q ss_pred EEEecCCCcHHHHHHHHHHhc---CCCEEEE
Q 010184 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (516)
+|.++-|+|||.++-.+...+ +.+++++
T Consensus 7 ~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~ 37 (209)
T d1nn5a_ 7 VLEGVDRAGKSTQSRKLVEALCAAGHRAELL 37 (209)
T ss_dssp EEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 444999999999887776543 4556544
No 203
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus [TaxId: 2261]}
Probab=36.53 E-value=9.5 Score=34.06 Aligned_cols=16 Identities=44% Similarity=0.484 Sum_probs=13.4
Q ss_pred ccEEEecCCCcHHHHH
Q 010184 45 SGIIVLPCGAGKSLVG 60 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (516)
-.+|++|+|+|||.+.
T Consensus 28 lnvi~G~NGsGKS~il 43 (329)
T g1xew.1 28 FTAIVGANGSGKSNIG 43 (329)
T ss_dssp EEEEEECTTSSSHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4479999999999764
No 204
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]}
Probab=35.65 E-value=30 Score=30.59 Aligned_cols=55 Identities=9% Similarity=0.039 Sum_probs=38.9
Q ss_pred HHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc-----ccCCCcEEEEch
Q 010184 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-----FRGNAGVVVTTY 121 (516)
Q Consensus 63 ~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~IvV~T~ 121 (516)
.+....+++||+||+..-+++....+.+. + ..|..++|...+. ..+..+|+|+|-
T Consensus 31 ~i~~~~g~~~~F~~s~~~~~~~a~~L~~~-g---~~V~~l~~~~~~~e~~~~~~~~~~~~~~t~ 90 (299)
T d1yksa2 31 WILADKRPTAWFLPSIRAANVMAASLRKA-G---KSVVVLNRKTFEREYPTIKQKKPDFILATD 90 (299)
T ss_dssp HHHHCCSCEEEECSCHHHHHHHHHHHHHT-T---CCEEECCSSSCC--------CCCSEEEESS
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHHhc-C---CeEEEEcCcCcHhHHhhhhcCCcCEEEEec
Confidence 34456789999999998888888888874 2 3577777764322 235678999885
No 205
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=35.54 E-value=17 Score=32.04 Aligned_cols=43 Identities=9% Similarity=-0.030 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHHHHh
Q 010184 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (516)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (516)
.++.+-=.++++.++--+++.+..|.++.|+|||..+..++..
T Consensus 49 ~~~l~TGIraID~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 49 QEILVTGIKVVDLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp CCEECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcccccCceeeeeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 3443344577887765444457899999999999998888765
No 206
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=35.20 E-value=11 Score=32.29 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=16.8
Q ss_pred cccEEEecCCCcHHHHHHHHHHhc
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
....|.+|.|+|||.. +..+.-+
T Consensus 32 e~~~iiG~sGsGKSTL-l~~i~gl 54 (230)
T d1l2ta_ 32 EFVSIMGPSGSGKSTM-LNIIGCL 54 (230)
T ss_dssp CEEEEECSTTSSHHHH-HHHHTTS
T ss_pred CEEEEECCCCCCcchh-hHhccCC
Confidence 4678899999999965 4444443
No 207
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}
Probab=35.18 E-value=15 Score=31.66 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=21.2
Q ss_pred cEEEecCCCcHHHHHHHHH---HhcCCCEEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAA---CRIKKSCLCLA 75 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~ 75 (516)
..|++-=|.|||.+++.++ +..++++|+|=
T Consensus 4 Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID 36 (269)
T d1cp2a_ 4 VAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3456777999999988755 34467777763
No 208
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.15 E-value=6.1 Score=33.55 Aligned_cols=33 Identities=15% Similarity=-0.135 Sum_probs=24.7
Q ss_pred cccEEEecCCCcHHHHHHHHHHhcCCCEEEEEe
Q 010184 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (516)
+..+|-|+-|+|||.++-.++..+.+.-+...|
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~~~~~~~e~ 35 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCEDWEVVPEP 35 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCTTEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhcCCCeeee
Confidence 356788999999999998888777655544444
No 209
>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=34.78 E-value=17 Score=30.34 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=20.3
Q ss_pred EEEecCCCcHHHHHHHHH---HhcCCCEEEE
Q 010184 47 IIVLPCGAGKSLVGVSAA---CRIKKSCLCL 74 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i---~~~~~~~Lvl 74 (516)
+...-=|.|||.++..++ ++.++++++|
T Consensus 6 v~s~KGGvGKTtia~nlA~~la~~g~~Vlli 36 (232)
T d1hyqa_ 6 VASGKGGTGKTTITANLGVALAQLGHDVTIV 36 (232)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCChHHHHHHHHHHHHHhCCCCEEEE
Confidence 344667999999988765 3446788776
No 210
>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}
Probab=34.56 E-value=17 Score=29.73 Aligned_cols=44 Identities=18% Similarity=0.132 Sum_probs=30.6
Q ss_pred EEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 47 IIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
+|.++.+|||+--|-.++ ....++++|++....=..|.+.+.++
T Consensus 3 LVtGGarSGKS~~AE~l~-~~~~~~~YiAT~~~~D~em~~RI~~H 46 (180)
T d1c9ka_ 3 LVTGGARSGKSRHAEALI-GDAPQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEECTTSSHHHHHHHHH-CSCSSEEEEECCCC------CHHHHH
T ss_pred EEECCCCccHHHHHHHHH-hcCCCcEEEEccCCCCHHHHHHHHHH
Confidence 678999999998887765 33578999999887666688777765
No 211
>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}
Probab=34.51 E-value=16 Score=31.97 Aligned_cols=29 Identities=21% Similarity=0.185 Sum_probs=21.1
Q ss_pred cEEEecCCCcHHHHHHHHH---HhcCCCEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAA---CRIKKSCLCL 74 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl 74 (516)
.++.+-=|.|||.+++.++ ++.++++|+|
T Consensus 5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlI 36 (289)
T d2afhe1 5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3456677999999887654 4457787776
No 212
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}
Probab=34.43 E-value=9.2 Score=33.06 Aligned_cols=22 Identities=27% Similarity=0.074 Sum_probs=17.3
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
....|++|+|+|||...-.+..
T Consensus 30 e~vaIvG~sGsGKSTLl~ll~g 51 (241)
T d2pmka1 30 EVIGIVGRSGSGKSTLTKLIQR 51 (241)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4778999999999976655553
No 213
>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}
Probab=33.46 E-value=12 Score=30.94 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=18.0
Q ss_pred ccEEEecCCCcHHHHHHHHHHhc
Q 010184 45 SGIIVLPCGAGKSLVGVSAACRI 67 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (516)
-.++.++-|+|||.++-.+...+
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45666999999999987776544
No 214
>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=33.44 E-value=61 Score=23.69 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=55.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc-----ccccccccCEEEEe
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD-----NSIDIPEANVIIQI 339 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~-----~GlDlp~a~~vI~~ 339 (516)
..|.++..+.+-.+.++.+.+.- +..+++-.+|...-.++++..++.+...+|+.|.... +++.....+.+.
T Consensus 22 ~~g~~v~~a~~~~eal~~l~~~~~dliilD~~mP~~~G~e~~~~ir~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~-- 99 (119)
T d1zh2a1 22 GDGMRVFEAETLQRGLLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADDYLS-- 99 (119)
T ss_dssp TTTCEEEEESSHHHHHHHHHHHCCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEE--
T ss_pred HCCCEEEEeCCHHHHHHHHHhcCCCEEEeccccCCCCCchHHHHHHhccCCcEEEEeccCCHHHHHHHHHcCCCEEEE--
Confidence 55778877776666666655432 3445666666555556667777666667777764433 445554333333
Q ss_pred cCCCCCHHHHHHHhhccccc
Q 010184 340 SSHAGSRRQEAQRLGRILRA 359 (516)
Q Consensus 340 ~~~~~s~~~~~Qr~GR~~R~ 359 (516)
-|+ ++..+..++.++.|.
T Consensus 100 -KP~-~~~~L~~~i~~~lrr 117 (119)
T d1zh2a1 100 -KPF-GIGELQARLRVALRR 117 (119)
T ss_dssp -SSC-CHHHHHHHHHHHHHH
T ss_pred -CCC-CHHHHHHHHHHHHhh
Confidence 455 898999888887763
No 215
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=32.77 E-value=9.7 Score=35.20 Aligned_cols=18 Identities=33% Similarity=0.294 Sum_probs=14.1
Q ss_pred ccEEEecCCCcHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (516)
-.+|++|+|+|||.+.-+
T Consensus 27 l~~i~G~NGsGKS~ileA 44 (427)
T d1w1wa_ 27 FTSIIGPNGSGKSNMMDA 44 (427)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 458999999999976433
No 216
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=32.71 E-value=74 Score=23.09 Aligned_cols=89 Identities=11% Similarity=0.212 Sum_probs=52.7
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc-----ccccccccCEEEEe
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD-----NSIDIPEANVIIQI 339 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~-----~GlDlp~a~~vI~~ 339 (516)
..|..+..+.+-.+.++.+...- ...+++-.++...-.++++..+..+.+.+|+.|.... ++++....+.+.
T Consensus 22 ~~g~~v~~a~~~~eal~~~~~~~~dlillD~~mp~~~G~~~~~~i~~~~~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~-- 99 (117)
T d2a9pa1 22 KEGYEVVTAFNGREALEQFEAEQPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVT-- 99 (117)
T ss_dssp HTTCEEEEESSHHHHHHHHHHHCCSEEEECSSCSSSCHHHHHHHHHTTCCCCEEEEESCCSHHHHHHHHHHTCSEEEE--
T ss_pred HCCCEEEEECCHHHHHHHHHhcCCCEEEeccccCCCCccHHHHHHHhCCCCCEEEEecCCCHHHHHHHHHcCCCEEEE--
Confidence 44777776666666655554432 3334554555444456666666666778887765433 345554333332
Q ss_pred cCCCCCHHHHHHHhhcccc
Q 010184 340 SSHAGSRRQEAQRLGRILR 358 (516)
Q Consensus 340 ~~~~~s~~~~~Qr~GR~~R 358 (516)
-|+ ++..+..++.++.|
T Consensus 100 -KP~-~~~~L~~~i~~~lr 116 (117)
T d2a9pa1 100 -KPF-SNRELQARVKALLR 116 (117)
T ss_dssp -SSC-CHHHHHHHHHHHHH
T ss_pred -CCC-CHHHHHHHHHHHhC
Confidence 455 88888888877655
No 217
>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=32.62 E-value=15 Score=30.95 Aligned_cols=31 Identities=13% Similarity=0.020 Sum_probs=21.7
Q ss_pred cEEEecCCCcHHHHHHHHHHhc-CCCEEEEEe
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI-KKSCLCLAT 76 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P 76 (516)
.+|.+.-|||||..--.++... +.++.||+.
T Consensus 6 ~iitGFLGaGKTTll~~lL~~~~~~riaVI~N 37 (222)
T d1nija1 6 TLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 37 (222)
T ss_dssp EEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred EEEeeCCCCCHHHHHHHHHhcCCCCcEEEEEe
Confidence 5788999999997655555443 356766664
No 218
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Probab=32.42 E-value=7.3 Score=31.55 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=18.5
Q ss_pred HHhCCCCcccEEEecCCCcHHHHHHH
Q 010184 37 MFGNGRARSGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 37 ~~~~~~~~~~il~~~tG~GKTl~~i~ 62 (516)
++...+.-..++++++|+|||-..-.
T Consensus 11 l~~~~k~~KI~lvG~~~vGKTsLi~~ 36 (182)
T d1moza_ 11 LWGSNKELRILILGLDGAGKTTILYR 36 (182)
T ss_dssp GTTCSSCEEEEEEEETTSSHHHHHHH
T ss_pred HhCCCceEEEEEECCCCCCHHHHHHH
Confidence 33444445789999999999975543
No 219
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=32.11 E-value=53 Score=25.37 Aligned_cols=62 Identities=6% Similarity=-0.072 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCCcEEEEch
Q 010184 56 KSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTY 121 (516)
Q Consensus 56 KTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~ 121 (516)
|--.-..++.....++||.|+++.-+..+...|.+. + ..+..++++.... ..+...|+|+|-
T Consensus 16 K~~~L~~ll~~~~~k~IIF~~s~~~~~~l~~~L~~~-g---~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~ 86 (155)
T d1hv8a2 16 RFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDI-G---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD 86 (155)
T ss_dssp HHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHT-T---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT
T ss_pred HHHHHHHHHccCCCCEEEEECchHHHHHHHhhhccc-c---cccccccccchhhhhhhhhhhhhcccceeeeehh
Confidence 444444455555678999999998888877777764 2 3577777764321 136678888884
No 220
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.60 E-value=12 Score=32.44 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=17.7
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
....|++|.|+|||...-.+..
T Consensus 41 e~vaivG~sGsGKSTLl~li~g 62 (251)
T d1jj7a_ 41 EVTALVGPNGSGKSTVAALLQN 62 (251)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 4778999999999987766553
No 221
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=30.99 E-value=12 Score=32.63 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=16.7
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
....|++|.|+|||...-.++
T Consensus 42 e~iaivG~sGsGKSTLl~ll~ 62 (253)
T d3b60a1 42 KTVALVGRSGSGKSTIASLIT 62 (253)
T ss_dssp CEEEEEECTTSSHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 477899999999997765544
No 222
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.85 E-value=13 Score=30.70 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.5
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
++.+|++++|+|||-..-.+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999987665553
No 223
>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.79 E-value=92 Score=22.70 Aligned_cols=89 Identities=12% Similarity=0.126 Sum_probs=54.2
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-CCceEecCCCHHHHHHHHHHHhcC-CCccEEEEeCCC-----cccccccccCEEEE
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-RKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVG-----DNSIDIPEANVIIQ 338 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-~~~~i~g~~~~~eR~~~l~~F~~~-~~~~vLv~t~~~-----~~GlDlp~a~~vI~ 338 (516)
..|..+..+.+-.+.++.+.+.- ...+++-.+|...-.++++..++. +.+.+|+.|... .++++.-..+.+.
T Consensus 23 ~~g~~v~~a~~~~eal~~~~~~~~dlvl~D~~mP~~~G~el~~~ir~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~- 101 (121)
T d1ys7a2 23 LSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARSSVDDRVAGLEAGADDYLV- 101 (121)
T ss_dssp HTTCEEEEESSHHHHHHHHHHSCCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEEEECCCTTTCCCTTTTTTCSEEEE-
T ss_pred HCCCEEEEECCHHHHHHHHHhCCCCEEEEEeeccCcccHHHHHHHHhcCCCCEEEEEEeeCCHHHHHHHHHCCCCEEEE-
Confidence 45778887777666666554422 344566666665555666666543 467788776443 3455553333332
Q ss_pred ecCCCCCHHHHHHHhhcccc
Q 010184 339 ISSHAGSRRQEAQRLGRILR 358 (516)
Q Consensus 339 ~~~~~~s~~~~~Qr~GR~~R 358 (516)
-|+ ++..+..++-|+.|
T Consensus 102 --KP~-~~~~L~~~i~~~l~ 118 (121)
T d1ys7a2 102 --KPF-VLAELVARVKALLR 118 (121)
T ss_dssp --SSC-CHHHHHHHHHHHHH
T ss_pred --CCC-CHHHHHHHHHHHHH
Confidence 455 89899888887765
No 224
>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}
Probab=30.75 E-value=11 Score=32.04 Aligned_cols=23 Identities=9% Similarity=-0.120 Sum_probs=18.5
Q ss_pred cEEEecCCCcHHHHHHHHHHhcC
Q 010184 46 GIIVLPCGAGKSLVGVSAACRIK 68 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~ 68 (516)
..|.++.|||||.++-.+....+
T Consensus 4 IgiTG~igSGKsTva~~l~e~~g 26 (241)
T d1deka_ 4 IFLSGVKRSGKDTTADFIMSNYS 26 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 35789999999999988776654
No 225
>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}
Probab=30.60 E-value=91 Score=22.54 Aligned_cols=79 Identities=20% Similarity=0.167 Sum_probs=44.2
Q ss_pred CCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccccccCCCcEEEEchhhhhccCCCChhHHHHHHHHccCCccE
Q 010184 69 KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGL 148 (516)
Q Consensus 69 ~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~~~~~~ 148 (516)
|++|||=....+.......|..+ + ..|..++-. ...++.+....+++
T Consensus 1 KrILiVdDd~~~~~~l~~~L~~~-g--------------------~~v~~a~~~------------~eal~~~~~~~~dl 47 (117)
T d2a9pa1 1 KKILIVDDEKPISDIIKFNMTKE-G--------------------YEVVTAFNG------------REALEQFEAEQPDI 47 (117)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHT-T--------------------CEEEEESSH------------HHHHHHHHHHCCSE
T ss_pred CEEEEEECCHHHHHHHHHHHHHC-C--------------------CEEEEECCH------------HHHHHHHHhcCCCE
Confidence 46777777777666666666654 2 223322211 33345555678999
Q ss_pred EEEccCccCCch-hH--HHHHhhcccceEEEEeccCC
Q 010184 149 LLMDEVHVVPAH-MF--RKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 149 vIlDEaH~~~~~-~~--~~~l~~~~~~~~l~LTATp~ 182 (516)
||+|= .++.. .+ .+.+...+...++.+||...
T Consensus 48 illD~--~mp~~~G~~~~~~i~~~~~~pvI~lt~~~~ 82 (117)
T d2a9pa1 48 IILDL--MLPEIDGLEVAKTIRKTSSVPILMLSAKDS 82 (117)
T ss_dssp EEECS--SCSSSCHHHHHHHHHTTCCCCEEEEESCCS
T ss_pred EEecc--ccCCCCccHHHHHHHhCCCCCEEEEecCCC
Confidence 99993 34432 22 22233334445788888764
No 226
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=30.47 E-value=10 Score=33.75 Aligned_cols=30 Identities=17% Similarity=0.084 Sum_probs=18.0
Q ss_pred cEEEecCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010184 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (516)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (516)
.-|+++.|||||.++-.+.... +.++.+|.
T Consensus 7 IgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~ 39 (288)
T d1a7ja_ 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 39 (288)
T ss_dssp EEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEe
Confidence 4567999999999987765433 44566654
No 227
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Probab=30.08 E-value=11 Score=32.47 Aligned_cols=21 Identities=24% Similarity=0.137 Sum_probs=16.0
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
....|++|.|+|||...-.+.
T Consensus 29 e~vaivG~sGsGKSTLl~ll~ 49 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLE 49 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 467889999999996554443
No 228
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=29.63 E-value=15 Score=32.45 Aligned_cols=21 Identities=19% Similarity=0.083 Sum_probs=16.5
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
....|++|.|+|||...-.++
T Consensus 63 e~vaivG~nGsGKSTLl~~i~ 83 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLIL 83 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 466789999999997665554
No 229
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}
Probab=29.35 E-value=76 Score=24.84 Aligned_cols=62 Identities=8% Similarity=-0.081 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhc-CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc--------c-cCCCcEEEEch
Q 010184 56 KSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTY 121 (516)
Q Consensus 56 KTl~~i~~i~~~-~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~IvV~T~ 121 (516)
|.-.-..++... ..++||.|+++.-++.....|.+. + ..+..++|+.... + .+...|+|+|-
T Consensus 14 K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~-~---~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~ 85 (168)
T d1t5ia_ 14 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-N---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN 85 (168)
T ss_dssp HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESS
T ss_pred HHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccc-c---ccccccccccchhhhhhhhhhhccccceeeeccc
Confidence 444444444433 468999999998777776666664 2 3577888875422 1 36677888884
No 230
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.13 E-value=1.4e+02 Score=24.29 Aligned_cols=113 Identities=15% Similarity=0.259 Sum_probs=61.5
Q ss_pred HHHHHHHhCC--CCcccEEEecCCCcHHHHHHHHHHhcCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCccc-
Q 010184 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKE- 108 (516)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~- 108 (516)
.-+..++... ....-||-..||+|.....++ +.+..+.-|=++...+..-++.+.+. +. ++....++..+
T Consensus 28 ~~~~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~---~~~~~v~gvD~s~~mi~~a~~~~~~~-~~---~i~~~~~d~~~l 100 (251)
T d1wzna1 28 DFVEEIFKEDAKREVRRVLDLACGTGIPTLELA---ERGYEVVGLDLHEEMLRVARRKAKER-NL---KIEFLQGDVLEI 100 (251)
T ss_dssp HHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHH---HTTCEEEEEESCHHHHHHHHHHHHHT-TC---CCEEEESCGGGC
T ss_pred HHHHHHHHHhcCCCCCEEEEeCCCCCccchhhc---ccceEEEEEeeccccccccccccccc-cc---cchheehhhhhc
Confidence 3455555432 112458999999997755433 34556777777777666666665543 22 35555555333
Q ss_pred cccCCCcEEEEchhhhhccCCCChhHHHHHHHHcc--CCccEEEEcc
Q 010184 109 RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN--REWGLLLMDE 153 (516)
Q Consensus 109 ~~~~~~~IvV~T~~~l~~~~~r~~~~~~~~~~l~~--~~~~~vIlDE 153 (516)
.+.+..+++++....+..... .+....+..+.. ..=|++|+|-
T Consensus 101 ~~~~~fD~I~~~~~~~~~~~~--~~~~~~L~~~~~~LkpgG~lii~~ 145 (251)
T d1wzna1 101 AFKNEFDAVTMFFSTIMYFDE--EDLRKLFSKVAEALKPGGVFITDF 145 (251)
T ss_dssp CCCSCEEEEEECSSGGGGSCH--HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchHhhhhhhhhcCCh--HHHHHHHHHHHHHcCCCcEEEEEe
Confidence 234567888887766654311 111222222211 2336788874
No 231
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}
Probab=28.78 E-value=14 Score=30.70 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=17.2
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.-..|.+|.|+|||...-.++.
T Consensus 28 ei~~l~G~NGsGKSTLl~~i~g 49 (200)
T d1sgwa_ 28 NVVNFHGPNGIGKTTLLKTIST 49 (200)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCChHHHHHHHHhc
Confidence 3667899999999987666553
No 232
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}
Probab=28.73 E-value=3.7 Score=33.56 Aligned_cols=18 Identities=28% Similarity=0.163 Sum_probs=13.7
Q ss_pred ccEEEecCCCcHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (516)
-.+|++|.|+|||.+.-+
T Consensus 26 ~tvi~G~NGsGKStil~A 43 (222)
T d1qhla_ 26 VTTLSGGNGAGKSTTMAA 43 (222)
T ss_dssp HHHHHSCCSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 447889999999965433
No 233
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}
Probab=28.52 E-value=46 Score=28.70 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHHHhC---CCCcccEEEecCCCcHHHHHHHHHHhcC-------CCEEEEEe
Q 010184 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACRIK-------KSCLCLAT 76 (516)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~~~-------~~~Lvl~P 76 (516)
.+--|+.-.+-+-.++.. ...+-..|++.-|.|||..|..++.... ..++|++-
T Consensus 21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~v 84 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKD 84 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEEC
T ss_pred ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEe
Confidence 334588877666555532 2223446889999999999988876522 23667753
No 234
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=28.42 E-value=13 Score=32.45 Aligned_cols=18 Identities=28% Similarity=0.157 Sum_probs=14.9
Q ss_pred cccEEEecCCCcHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGV 61 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i 61 (516)
....|++|.|+|||...-
T Consensus 45 e~vaivG~sGsGKSTLl~ 62 (255)
T d2hyda1 45 ETVAFVGMSGGGKSTLIN 62 (255)
T ss_dssp CEEEEECSTTSSHHHHHT
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 477899999999997653
No 235
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=28.30 E-value=15 Score=31.64 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=15.1
Q ss_pred ccEEEecCCCcHHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i 64 (516)
-+.|.+|.|+|||...-.++
T Consensus 26 ~~~liGpnGaGKSTll~~i~ 45 (240)
T d2onka1 26 YCVLLGPTGAGKSVFLELIA 45 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHH
Confidence 45678999999996655544
No 236
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Probab=28.10 E-value=16 Score=31.35 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=15.6
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
....|.+|.|+|||...-.++
T Consensus 30 e~~~liG~sGaGKSTll~~i~ 50 (240)
T d1g2912 30 EFMILLGPSGCGKTTTLRMIA 50 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHh
Confidence 366789999999996644433
No 237
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}
Probab=27.93 E-value=9.2 Score=33.77 Aligned_cols=15 Identities=47% Similarity=0.572 Sum_probs=13.1
Q ss_pred ccEEEecCCCcHHHH
Q 010184 45 SGIIVLPCGAGKSLV 59 (516)
Q Consensus 45 ~~il~~~tG~GKTl~ 59 (516)
-.+|++|.|+|||-+
T Consensus 26 lnvlvG~NgsGKS~i 40 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNI 40 (308)
T ss_dssp EEEEECCTTTCSTHH
T ss_pred eEEEECCCCCcHHHH
Confidence 358999999999976
No 238
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=27.69 E-value=78 Score=24.75 Aligned_cols=63 Identities=10% Similarity=0.018 Sum_probs=42.1
Q ss_pred cHHHHHHHHHHhc-CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCCcEEEEch
Q 010184 55 GKSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTY 121 (516)
Q Consensus 55 GKTl~~i~~i~~~-~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~ 121 (516)
-|.-+-..++... ..++||.|+++.-++.....|... + ..+..++|+.... ..+...|+|+|-
T Consensus 18 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~-g---~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td 90 (171)
T d1s2ma2 18 QKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL-G---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD 90 (171)
T ss_dssp GHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH-T---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS
T ss_pred HHHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcc-c---ccccccccccchhhhhhhhhhcccCccccccchh
Confidence 4555555555554 478999999998777776666664 3 3567777765422 136678888886
No 239
>d1ozbi_ g.74.1.1 (I:) Preprotein translocase SecA C-terminal domain {Haemophilus influenzae [TaxId: 727]}
Probab=26.17 E-value=8.1 Score=20.56 Aligned_cols=8 Identities=63% Similarity=1.464 Sum_probs=5.7
Q ss_pred ecCCCcHH
Q 010184 50 LPCGAGKS 57 (516)
Q Consensus 50 ~~tG~GKT 57 (516)
-||||||-
T Consensus 7 CpCgSgkk 14 (26)
T d1ozbi_ 7 CPCGSGKK 14 (26)
T ss_dssp CTTTCSSB
T ss_pred CCCCCCcc
Confidence 37788874
No 240
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=26.08 E-value=16 Score=31.37 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.3
Q ss_pred ccEEEecCCCcHHHHH
Q 010184 45 SGIIVLPCGAGKSLVG 60 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (516)
-.+|+++.|+|||-+-
T Consensus 25 ln~IvG~NGsGKStiL 40 (292)
T g1f2t.1 25 INLIIGQNGSGKSSLL 40 (292)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3489999999999764
No 241
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}
Probab=26.06 E-value=38 Score=27.39 Aligned_cols=73 Identities=14% Similarity=0.068 Sum_probs=48.0
Q ss_pred cCCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCCcEEEEchhhhhccCCCChhHHHH
Q 010184 67 IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKI 137 (516)
Q Consensus 67 ~~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~~~l~~~~~r~~~~~~~ 137 (516)
.+.++||.|+++.-++.....|.+. +..+..++|+.... -.+..+|+|+|- .+..-
T Consensus 30 ~~~~~iif~~~~~~~~~~~~~l~~~----g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTd-v~~rG---------- 94 (181)
T d1t5la2 30 RNERTLVTTLTKKMAEDLTDYLKEA----GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-LLREG---------- 94 (181)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESC-CCSSS----------
T ss_pred cCCeEEEEeehhhhhHHHHHHHHhC----CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehh-HHHcc----------
Confidence 3578999999998666555555543 34688888886532 147899999994 22111
Q ss_pred HHHHccCCccEEEEccCccC
Q 010184 138 IEEIRNREWGLLLMDEVHVV 157 (516)
Q Consensus 138 ~~~l~~~~~~~vIlDEaH~~ 157 (516)
+.-....+||.-.+...
T Consensus 95 ---iDip~v~~VI~~d~p~~ 111 (181)
T d1t5la2 95 ---LDIPEVSLVAILDADKE 111 (181)
T ss_dssp ---CCCTTEEEEEETTTTSC
T ss_pred ---CCCCCCCEEEEecCCcc
Confidence 11255678888777654
No 242
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}
Probab=25.86 E-value=20 Score=28.22 Aligned_cols=21 Identities=14% Similarity=-0.047 Sum_probs=16.8
Q ss_pred CcccEEEecCCCcHHHHHHHH
Q 010184 43 ARSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~ 63 (516)
....+|++++|+|||-..-.+
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l 33 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHML 33 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHH
Confidence 357899999999999875444
No 243
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}
Probab=24.91 E-value=30 Score=30.98 Aligned_cols=35 Identities=29% Similarity=0.100 Sum_probs=22.5
Q ss_pred CCCcccEEEecCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010184 41 GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (516)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (516)
+++...-|.+|+|+|||-..-.++.. .+.++-||+
T Consensus 49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaVia 86 (323)
T d2qm8a1 49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLA 86 (323)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeee
Confidence 33344567799999999876666543 345555554
No 244
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.70 E-value=21 Score=30.49 Aligned_cols=20 Identities=30% Similarity=0.270 Sum_probs=15.0
Q ss_pred cccEEEecCCCcHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~ 63 (516)
.-..|.+|.|+|||...-.+
T Consensus 27 ei~~liGpsGsGKSTLl~~i 46 (232)
T d2awna2 27 EFVVFVGPSGCGKSTLLRMI 46 (232)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHH
Confidence 36788899999999664333
No 245
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.65 E-value=21 Score=30.29 Aligned_cols=32 Identities=16% Similarity=0.095 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCcccEEEecCCCcHHHHHHHH
Q 010184 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (516)
...+.+..++.+. ..+++++.|.|||-..-++
T Consensus 84 ~g~~~L~~~l~~k---t~~~~G~SGVGKSTLiN~L 115 (225)
T d1u0la2 84 MGIEELKEYLKGK---ISTMAGLSGVGKSSLLNAI 115 (225)
T ss_dssp TTHHHHHHHHSSS---EEEEECSTTSSHHHHHHHH
T ss_pred hhHhhHHHHhcCC---eEEEECCCCCCHHHHHHhh
Confidence 3456666666543 7889999999998665443
No 246
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.43 E-value=69 Score=26.53 Aligned_cols=68 Identities=12% Similarity=0.071 Sum_probs=47.1
Q ss_pred CCCeEEEEeccHHHHHHHHHHh---------CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCC------Cccccccc
Q 010184 267 RGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV------GDNSIDIP 331 (516)
Q Consensus 267 ~~~k~iVF~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~------~~~GlDlp 331 (516)
..-+++|++++.+.+..+++.+ ++..+.|+.+..+....+ +. ...+||+|.- -...+++.
T Consensus 84 ~~~~~lil~PtreLa~Qi~~~~~~l~~~~~i~~~~~~g~~~~~~~~~~l---~~--~~~Ilv~TPgrl~~~~~~~~~~~~ 158 (222)
T d2j0sa1 84 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKL---DY--GQHVVAGTPGRVFDMIRRRSLRTR 158 (222)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHH---HH--CCSEEEECHHHHHHHHHTTSSCCT
T ss_pred cCceeEEecchHHHHHHHHHHHHHHhCccceeEEEEeecccchhhHHHh---cc--CCeEEeCCCCcHHhcccccccccc
Confidence 3457899999999988877655 133577887765544433 33 4579999831 24567888
Q ss_pred ccCEEEEe
Q 010184 332 EANVIIQI 339 (516)
Q Consensus 332 ~a~~vI~~ 339 (516)
.+.++|+.
T Consensus 159 ~l~~lVlD 166 (222)
T d2j0sa1 159 AIKMLVLD 166 (222)
T ss_dssp TCCEEEEE
T ss_pred cceeeeec
Confidence 89999875
No 247
>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.34 E-value=1e+02 Score=22.31 Aligned_cols=90 Identities=11% Similarity=0.064 Sum_probs=54.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-CCceEecCCCHHHHHHHHHHHhcC-CCccEEEEeCCC-----cccccccccCEEEE
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-RKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVG-----DNSIDIPEANVIIQ 338 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-~~~~i~g~~~~~eR~~~l~~F~~~-~~~~vLv~t~~~-----~~GlDlp~a~~vI~ 338 (516)
..|..+.++.+..+.++.+...- +..+++-.+|...-.+.++.++.. +...+|+.|... .++++.. ++-.+.
T Consensus 23 ~~g~~v~~a~~~~~al~~l~~~~~dlillD~~mp~~~g~~~~~~lr~~~~~~piI~lt~~~~~~~~~~~~~~G-a~~yl~ 101 (122)
T d1kgsa2 23 KEMFTVDVCYDGEEGMYMALNEPFDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMG-ADDYLP 101 (122)
T ss_dssp HTTCEEEEESSHHHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEEEESSCHHHHHHHTCCCC-CSEEEE
T ss_pred HCCCEEEEEcchHHHHHHHHhhCccccccccccccchhHHHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHHcC-Cceeec
Confidence 45778777766666655554421 344566666665555666666544 466788777553 3456664 333332
Q ss_pred ecCCCCCHHHHHHHhhccccc
Q 010184 339 ISSHAGSRRQEAQRLGRILRA 359 (516)
Q Consensus 339 ~~~~~~s~~~~~Qr~GR~~R~ 359 (516)
-|+ ++..+..++-++.|.
T Consensus 102 --KP~-~~~~L~~~i~~~l~r 119 (122)
T d1kgsa2 102 --KPF-DLRELIARVRALIRR 119 (122)
T ss_dssp --SSC-CHHHHHHHHHHHHHH
T ss_pred --CCC-CHHHHHHHHHHHHHH
Confidence 455 888888888777663
No 248
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.21 E-value=20 Score=27.37 Aligned_cols=21 Identities=14% Similarity=-0.080 Sum_probs=17.1
Q ss_pred ccEEEecCCCcHHHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~ 65 (516)
..++++++|+|||-..-.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~ 22 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKN 22 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 568999999999987766553
No 249
>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=24.14 E-value=73 Score=23.33 Aligned_cols=89 Identities=10% Similarity=0.069 Sum_probs=50.1
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-CCceEecCCCHHHHHHHHHHHhcCCCccEEEEeCCCc-----ccccccccCEEEEe
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD-----NSIDIPEANVIIQI 339 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-~~~~i~g~~~~~eR~~~l~~F~~~~~~~vLv~t~~~~-----~GlDlp~a~~vI~~ 339 (516)
..|.++..+.+..+.++.+...- +..+++-.++...-.++++.+++.+.+.+|+.|...+ ++++....+++.
T Consensus 24 ~~g~~v~~a~~~~~al~~l~~~~~dlii~D~~mp~~~G~~~~~~~r~~~~~pii~lt~~~~~~~~~~a~~~Ga~dyl~-- 101 (121)
T d1xhfa1 24 AEGYDVFEATDGAEMHQILSEYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT-- 101 (121)
T ss_dssp TTTCEEEEESSHHHHHHHHHHSCCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEESCCSHHHHHHHHHHTCSEEEE--
T ss_pred HCCCEEEEECChHHHHHHHHhcCCCEEEeecccCCccCcHHHHHHHhcCCCcEEEEECCCCHHHHHHHHHcCCCEEEe--
Confidence 45777776666555555554321 2334444555444456666666666788888775433 445554333333
Q ss_pred cCCCCCHHHHHHHhhcccc
Q 010184 340 SSHAGSRRQEAQRLGRILR 358 (516)
Q Consensus 340 ~~~~~s~~~~~Qr~GR~~R 358 (516)
-|+ ++..+..++-++.|
T Consensus 102 -KP~-~~~~L~~~v~~~l~ 118 (121)
T d1xhfa1 102 -KPF-NPRELTIRARNLLS 118 (121)
T ss_dssp -SSC-CHHHHHHHHHHHHH
T ss_pred -CCC-CHHHHHHHHHHHHh
Confidence 455 77777766655443
No 250
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}
Probab=24.13 E-value=20 Score=27.48 Aligned_cols=20 Identities=20% Similarity=0.054 Sum_probs=16.3
Q ss_pred ccEEEecCCCcHHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i 64 (516)
..+++++.|+|||-..-.++
T Consensus 2 kivlvG~~~vGKSsLi~~l~ 21 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLK 21 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 36899999999998776654
No 251
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}
Probab=23.71 E-value=19 Score=30.94 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=14.8
Q ss_pred cccEEEecCCCcHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVS 62 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~ 62 (516)
....|.+|.|+|||...-.
T Consensus 32 e~~~iiG~sGsGKSTLl~~ 50 (240)
T d3dhwc1 32 QIYGVIGASGAGKSTLIRC 50 (240)
T ss_dssp CEEEEEESTTSSHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 3678899999999966433
No 252
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.85 E-value=1.3e+02 Score=23.10 Aligned_cols=51 Identities=12% Similarity=0.195 Sum_probs=36.5
Q ss_pred CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc--------c-cCCCcEEEEchh
Q 010184 68 KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTYN 122 (516)
Q Consensus 68 ~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~IvV~T~~ 122 (516)
.+++||.|.++.-+++..+.+... + ..+..++|+.... + .+...|+|+|--
T Consensus 27 ~~k~iIF~~s~~~~~~l~~~L~~~-~---~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv 86 (162)
T d1fuka_ 27 VTQAVIFCNTRRKVEELTTKLRND-K---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL 86 (162)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT-T---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGG
T ss_pred CCcEEEEEEEEchHHHHHHHHhhc-C---ceEEEeccCCchhhHHHHHHHHhhcccceeecccc
Confidence 478999999999888877777664 2 2577777764421 1 367889998863
No 253
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.72 E-value=22 Score=28.95 Aligned_cols=28 Identities=25% Similarity=0.125 Sum_probs=20.3
Q ss_pred EEEecCCCcHHHHHHHHHHhc---CCCEEEE
Q 010184 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (516)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (516)
+|.+.-|+|||.++-.+...+ +.++.++
T Consensus 4 ~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~ 34 (208)
T d1gsia_ 4 AIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (208)
T ss_dssp EEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 567999999999988777554 3455544
No 254
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}
Probab=22.35 E-value=37 Score=26.48 Aligned_cols=27 Identities=26% Similarity=0.252 Sum_probs=19.3
Q ss_pred HHHhCCCCcccEEEecCCCcHHHHHHHH
Q 010184 36 KMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 36 ~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (516)
+++++. ....++++..|+|||-..-.+
T Consensus 9 ~~~~~k-~~kI~vvG~~~~GKSsLi~rl 35 (177)
T d1zj6a1 9 RLFNHQ-EHKVIIVGLDNAGKTTILYQF 35 (177)
T ss_dssp HHHTTS-CEEEEEEESTTSSHHHHHHHH
T ss_pred HHhCCC-eEEEEEECCCCCCHHHHHHHH
Confidence 456553 247899999999999655443
No 255
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=22.08 E-value=20 Score=31.40 Aligned_cols=16 Identities=31% Similarity=0.358 Sum_probs=13.4
Q ss_pred ccEEEecCCCcHHHHH
Q 010184 45 SGIIVLPCGAGKSLVG 60 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (516)
-.+|+++.|+|||-+.
T Consensus 25 ~~vi~G~NgsGKTtil 40 (369)
T g1ii8.1 25 INLIIGQNGSGKSSLL 40 (369)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999654
No 256
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}
Probab=21.83 E-value=21 Score=30.55 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=16.2
Q ss_pred cccEEEecCCCcHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAA 64 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (516)
.-..|.+|.|+|||...-.+.
T Consensus 33 ei~~liGpnGaGKSTl~~~i~ 53 (240)
T d1ji0a_ 33 QIVTLIGANGAGKTTTLSAIA 53 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHh
Confidence 356788999999997765554
No 257
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=21.70 E-value=26 Score=30.01 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=16.9
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.-..|.+|.|+|||...-.+..
T Consensus 33 e~~~liGpsGaGKSTLl~~i~G 54 (239)
T d1v43a3 33 EFLVLLGPSGCGKTTTLRMIAG 54 (239)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCChHHHHHHHHHc
Confidence 3668899999999977655543
No 258
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]}
Probab=21.64 E-value=65 Score=26.26 Aligned_cols=50 Identities=16% Similarity=0.165 Sum_probs=36.0
Q ss_pred CCCEEEEEeChhhHHHHHHHHHHhhCCCCCcEEEEeCCcccc---------ccCCCcEEEEch
Q 010184 68 KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTY 121 (516)
Q Consensus 68 ~~~~Lvl~P~~~L~~Qw~~e~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~IvV~T~ 121 (516)
..++||.|+++.-++.+...+... +..+..++|+.... ..+...|+|+|-
T Consensus 30 ~~~~IIF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd 88 (200)
T d1oywa3 30 GKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 88 (200)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred CCCEEEEEeeehhhHHhhhhhccC----CceeEEecCCCcHHHHHHHHHHHhcccceEEEecc
Confidence 468999999999788777766654 23678888875422 136678888886
No 259
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=21.61 E-value=17 Score=31.05 Aligned_cols=22 Identities=36% Similarity=0.312 Sum_probs=16.9
Q ss_pred cccEEEecCCCcHHHHHHHHHH
Q 010184 44 RSGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (516)
.-..|.+|.|+|||...-.++-
T Consensus 27 e~~~liGpsGaGKSTll~~l~G 48 (229)
T d3d31a2 27 EYFVILGPTGAGKTLFLELIAG 48 (229)
T ss_dssp CEEEEECCCTHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 3678899999999977655553
No 260
>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}
Probab=21.44 E-value=1.4e+02 Score=21.52 Aligned_cols=88 Identities=15% Similarity=0.179 Sum_probs=52.8
Q ss_pred cCCCeEEEEeccHHHHHHHHHHh-CCceEecCCCHHHHHHHHHHHhcC-CCccEEEEeCCCc-----ccccccccCEEEE
Q 010184 266 QRGDKIIVFADNLFALTEYAMKL-RKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGD-----NSIDIPEANVIIQ 338 (516)
Q Consensus 266 ~~~~k~iVF~~~~~~~~~l~~~L-~~~~i~g~~~~~eR~~~l~~F~~~-~~~~vLv~t~~~~-----~GlDlp~a~~vI~ 338 (516)
..|..+..+.+..+.++.+.+.- +..+++-.+|...-.+++++.+.. +...+++.|.... +++... ++-.+
T Consensus 23 ~~g~~v~~a~~g~eal~~~~~~~~dlillD~~mP~~~G~el~~~lr~~~~~~pvi~lt~~~~~~~~~~a~~~G-a~~yl- 100 (119)
T d1peya_ 23 KEGYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIMTAYGELDMIQESKELG-ALTHF- 100 (119)
T ss_dssp HTTCEEEEESSHHHHHHHHHHHCCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEEESSCCHHHHHHHHHTT-CCEEE-
T ss_pred HcCCEEEEeCCHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHCC-CCEEE-
Confidence 34778877777666666655542 445566666655555555555442 4677888875544 344553 33323
Q ss_pred ecCCCCCHHHHHHHhhccc
Q 010184 339 ISSHAGSRRQEAQRLGRIL 357 (516)
Q Consensus 339 ~~~~~~s~~~~~Qr~GR~~ 357 (516)
.-|+ ++....+++.|+.
T Consensus 101 -~KP~-~~~~L~~~v~~~L 117 (119)
T d1peya_ 101 -AKPF-DIDEIRDAVKKYL 117 (119)
T ss_dssp -ESSC-CHHHHHHHHHHHS
T ss_pred -ECCC-CHHHHHHHHHHHC
Confidence 2555 8888888887753
No 261
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=21.06 E-value=25 Score=27.58 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=17.0
Q ss_pred ccEEEecCCCcHHHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSAAC 65 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~ 65 (516)
..+++++.|+|||-..-.++.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 368999999999987776654
No 262
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=20.93 E-value=76 Score=25.74 Aligned_cols=25 Identities=8% Similarity=0.097 Sum_probs=19.2
Q ss_pred cCCCEEEEEeChhhHHHHHHHHHHh
Q 010184 67 IKKSCLCLATNAVSVDQWAFQFKLW 91 (516)
Q Consensus 67 ~~~~~Lvl~P~~~L~~Qw~~e~~~~ 91 (516)
-++++||.||++.-+......+..+
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~ 63 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAI 63 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 3679999999987777777676654
No 263
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}
Probab=20.86 E-value=27 Score=27.46 Aligned_cols=30 Identities=30% Similarity=0.306 Sum_probs=20.3
Q ss_pred HHHHHHhCCCCcccEEEecCCCcHHHHHHHH
Q 010184 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~ 63 (516)
.+++++++. .-..+++++.|+|||-..-.+
T Consensus 3 ~~~~~~~~k-~~kIvlvG~~~vGKTSli~rl 32 (173)
T d1e0sa_ 3 VLSKIFGNK-EMRILMLGLDAAGKTTILYKL 32 (173)
T ss_dssp HHHHHHTTC-CEEEEEEEETTSSHHHHHHHT
T ss_pred hhhhhhCCC-eEEEEEECCCCCCHHHHHHHH
Confidence 345556543 236889999999999665443
No 264
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=20.63 E-value=22 Score=32.15 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=12.8
Q ss_pred EEEecCCCcHHHHHHH
Q 010184 47 IIVLPCGAGKSLVGVS 62 (516)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (516)
+..+.||+|||.+...
T Consensus 87 ~aYGqtgSGKT~T~~G 102 (342)
T d1f9va_ 87 FAYGQTGSGKTFTMLN 102 (342)
T ss_dssp EEECCTTSSHHHHHHS
T ss_pred eeeeccCCcccccccc
Confidence 3458999999998764
No 265
>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}
Probab=20.42 E-value=1.5e+02 Score=21.46 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=27.6
Q ss_pred HHHHHccCCccEEEEccCccCCch----hHHHHHhhcccceEEEEeccCC
Q 010184 137 IIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCKLGLTATLV 182 (516)
Q Consensus 137 ~~~~l~~~~~~~vIlDEaH~~~~~----~~~~~l~~~~~~~~l~LTATp~ 182 (516)
.++.+....+++||+| ..++.. ..+++....+.-.+|.+||...
T Consensus 39 a~~~l~~~~~dlii~D--~~mp~~~G~el~~~l~~~~~~~piI~~t~~~~ 86 (123)
T d1krwa_ 39 VLAALASKTPDVLLSD--IRMPGMDGLALLKQIKQRHPMLPVIIMTAHSD 86 (123)
T ss_dssp HHHHHTTCCCSEEEEC--CSSSSSTTHHHHHHHHHHSSSCCEEESCCCSC
T ss_pred HHHHHHhCCCCEEEeh--hhcCCchHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 3566667889999999 335543 2333333334446788888764
No 266
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}
Probab=20.06 E-value=25 Score=27.32 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=15.0
Q ss_pred ccEEEecCCCcHHHHHHHH
Q 010184 45 SGIIVLPCGAGKSLVGVSA 63 (516)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~ 63 (516)
..+++++.|+|||-..-.+
T Consensus 4 ki~ivG~~~~GKTsLi~~l 22 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKF 22 (165)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5689999999999655443
Done!