Query 010185
Match_columns 516
No_of_seqs 469 out of 2531
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 21:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010185.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010185hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.9E-49 6.6E-54 398.4 40.3 449 18-493 5-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.1E-38 3.7E-43 316.6 20.3 399 20-473 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 4.4E-37 1.5E-41 303.9 30.3 378 21-471 22-430 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.5E-32 8.6E-37 273.8 28.1 395 72-477 46-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 9.8E-34 3.4E-38 273.8 10.4 361 28-463 3-366 (375)
6 2xut_A Proton/peptide symporte 100.0 1.9E-28 6.6E-33 247.6 20.3 142 77-221 51-197 (524)
7 2cfq_A Lactose permease; trans 100.0 1.1E-28 3.8E-33 241.4 10.4 355 75-477 38-404 (417)
8 3o7q_A L-fucose-proton symport 99.4 3.1E-12 1.1E-16 125.6 17.5 154 285-451 28-182 (438)
9 2gfp_A EMRD, multidrug resista 99.4 2.1E-12 7.3E-17 124.0 12.1 169 293-477 10-179 (375)
10 2cfq_A Lactose permease; trans 99.4 1.6E-12 5.4E-17 126.7 10.7 146 78-226 257-404 (417)
11 1pw4_A Glycerol-3-phosphate tr 99.4 6.6E-12 2.2E-16 123.8 14.9 144 75-221 283-432 (451)
12 2xut_A Proton/peptide symporte 99.3 2.1E-11 7.3E-16 122.7 16.6 160 298-472 27-197 (524)
13 4aps_A DI-OR tripeptide H+ sym 99.3 1.7E-11 5.7E-16 122.3 15.7 164 292-471 22-194 (491)
14 4gc0_A D-xylose-proton symport 99.1 1.4E-09 4.9E-14 108.3 14.4 150 76-226 308-467 (491)
15 2g9p_A Antimicrobial peptide l 60.9 4.9 0.00017 19.4 1.5 14 99-112 2-15 (26)
16 4dve_A Biotin transporter BIOY 27.8 1.4E+02 0.0046 24.7 6.2 25 86-110 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.9e-49 Score=398.42 Aligned_cols=449 Identities=28% Similarity=0.509 Sum_probs=360.3
Q ss_pred CchHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHH
Q 010185 18 GVTSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVAS 97 (516)
Q Consensus 18 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~ 97 (516)
..+++.+.++++++++.+++|||.++++.+. |.+.++|..+. ..+.+.++.+.|++.+++.+|..+|+
T Consensus 5 ~~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~--~~~~~~~~~~~----------~~~~~~~~~~~g~~~s~~~~G~~iG~ 72 (491)
T 4gc0_A 5 YNSSYIFSITLVATLGGLLFGYDTAVISGTV--ESLNTVFVAPQ----------NLSESAANSLLGFCVASALIGCIIGG 72 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHGGGGTH--HHHHHHHTGGG----------CCCHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cChHHHhhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCCC----------CCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999999999998764 66666663221 11124467788999999999999999
Q ss_pred HhhHHHHhhhchhHHHHHHHHHHHHHHHHHH------------------hchhhhHHHHHHHhhhhcccccccchhhhhh
Q 010185 98 FFASVVTRMYGRKMSMTVGGISFLIGAIING------------------AAVNIAMLIIGRLMLGVGVGFANQVVPVYLS 159 (516)
Q Consensus 98 ~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~ 159 (516)
+++|+++||+|||+++.++.+++.+++++++ +++|+++++++|+++|+|.|...+....+++
T Consensus 73 ~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~ 152 (491)
T 4gc0_A 73 ALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIA 152 (491)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998 4789999999999999999999999999999
Q ss_pred ccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhcccc-----CCcchhHHHHHhHHHHHHHHHhhccCCCChHHHHhcCC
Q 010185 160 EMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKIS-----GGWGWRVSLALAAVPAILMTVGSFFLPDTPNSILERGH 234 (516)
Q Consensus 160 ~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~-----~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~ 234 (516)
|+.|+++|++..++.+.+..+|.++++.++....... ....||+.+.+..++.++..+..+++||||||+..+++
T Consensus 153 E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 153 ELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp TTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred hhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 9999999999999999999999999999887665432 23479999999999988888888889999999999999
Q ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHhcC
Q 010185 235 VDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKTIG 314 (516)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 314 (516)
.+++.+.+++...++..+++..+.++...++++.. .... ....++.........+.+..+.+.+..|.+.+.+..+
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLG 308 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSS
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcC
Confidence 99999998887665443333333222222222111 1111 1234556666666777778888889999999999988
Q ss_pred CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHH
Q 010185 315 FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLIC 394 (516)
Q Consensus 315 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (516)
.+...........++..+++.++++++.||+|||+.+..+...+.++++.+...... ....+..+....
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~~~~ 377 (491)
T 4gc0_A 309 ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-----------QAPGIVALLSML 377 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-----------TCCHHHHHHHHH
T ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-----------ccchHHHHHHHH
Confidence 888888888888999999999999999999999999999888888887776654322 123445555566
Q ss_pred HHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhc------c-hhhHHHHHHHHHHHHH
Q 010185 395 AYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHF------K-FGLFFFFAGFVAVMTV 467 (516)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~ 467 (516)
++..++..+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+.. + ...++++++++++..+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i 457 (491)
T 4gc0_A 378 FYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAAL 457 (491)
T ss_dssp HHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 66777777888888999999999999999999999999999999999887765432 2 2356677888888888
Q ss_pred HHhhcccCCCCCCHHHHHHHHhcCcc
Q 010185 468 FVFYMVPETRNVPIEEMNRMWKAHWF 493 (516)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (516)
+.++++||||+|++||+++.+|++.+
T Consensus 458 ~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 458 FMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HHHheecCCCCCCHHHHHHHhCCCCc
Confidence 88899999999999999888765554
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.1e-38 Score=316.64 Aligned_cols=399 Identities=14% Similarity=0.046 Sum_probs=288.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHh
Q 010185 20 TSFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFF 99 (516)
Q Consensus 20 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~ 99 (516)
+++++..+...+++.+..+++...+++.. |.+ .+++ .+..+.+++.+++.++..+++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~ 81 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAM--PYL------------------VEQG-FSRGDLGFALSGISIAYGFSKFI 81 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHH--HHT------------------TSST-TCSSCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH------------------HHHh-ccHhHHHHHHHHHHHHHHHHHHh
Confidence 34567777888888888888877765443 322 3445 68899999999999999999999
Q ss_pred hHHHHhhhchhHHHHHHHHHHHHHHHHHHh----chhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHH
Q 010185 100 ASVVTRMYGRKMSMTVGGISFLIGAIINGA----AVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQ 175 (516)
Q Consensus 100 ~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 175 (516)
+|+++||+|||+++.++.++.+++.+++++ ++|++.++++|+++|++.+...+...+++.|++|+++|++++++..
T Consensus 82 ~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~ 161 (451)
T 1pw4_A 82 MGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWN 161 (451)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHH
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhccccCCcc-hhHHHHHhHHHHHHHHHhh-ccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHH
Q 010185 176 MAITIGILIANLVNYGTAKISGGWG-WRVSLALAAVPAILMTVGS-FFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDE 253 (516)
Q Consensus 176 ~~~~~G~~i~~~i~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (516)
.+..+|.+++|.+++.+.... + ||+.|++.+++.++..++. +++||+|++...+++.+.. ++ +.
T Consensus 162 ~~~~~g~~~g~~~~~~l~~~~---g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~ 227 (451)
T 1pw4_A 162 CAHNVGGGIPPLLFLLGMAWF---NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK----------ND-YP 227 (451)
T ss_dssp HHHHHHHTSHHHHHHHHHHHT---CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC----------CC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc----------cc-cc
Confidence 999999999999988765433 6 9999999998887765544 5588887543211111000 00 00
Q ss_pred HHHHHHHHHHHhhhccCchhhh-hccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHH
Q 010185 254 EFQDLYDASEAAKQVHHPWTNI-LRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVN 331 (516)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 331 (516)
+ +. +++++++.+.++. .+...+++.++...+..+...........+.|.++++ +|+++.+.+.......++.
T Consensus 228 ~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 301 (451)
T 1pw4_A 228 D-DY-----NEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 301 (451)
T ss_dssp -----------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred c-cc-----hhhhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 0 00 0001111122221 1112222333444444444555566777888888877 7999999999999999999
Q ss_pred HHHhHhHhhhhccc--CCchHHHhhhHHHH-HHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCccccc
Q 010185 332 VVATLVSVFSVDKF--GRRVLFLEGGVQMF-ICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLG 408 (516)
Q Consensus 332 ~~~~~~~g~l~d~~--g~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (516)
+++.++.+++.||+ +||+.+..+..+.. ++.+++.. ....+.+.......+.+. ......+..
T Consensus 302 ~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g~-~~~~~~~~~ 367 (451)
T 1pw4_A 302 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM-------------NPAGNPTVDMICMIVIGF-LIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS-------------CCTTCHHHHHHHHHHHHH-HHTHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH-------------hcccCHHHHHHHHHHHHH-HHhchHHHH
Confidence 99999999999999 99888776665554 33333221 011122222223222222 223334555
Q ss_pred ceeecccCchhhhhhhHHHHHHHHHH-HHHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010185 409 WLVPSEVCALEIRSAGQAINVSTNMI-FTFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMV 473 (516)
Q Consensus 409 ~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (516)
..+..|.+|++.|+++.|+.+...++ +..++|.+.|.+.+..++...+.+.+++.+.+.+..++.
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999 999999999999999887666655555555555444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=4.4e-37 Score=303.85 Aligned_cols=378 Identities=11% Similarity=0.090 Sum_probs=280.7
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhh
Q 010185 21 SFVLVTCLVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFA 100 (516)
Q Consensus 21 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~ 100 (516)
++.+.....+++..+..+++....++.. |.+.+++ |++..+.+++.+++.+++.++++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~i~~~~~ 81 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILL--PQFQQAF------------------TLTNFQAGLIQSAFYFGYFIIPIPA 81 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHS------------------CCCSHHHHHHHHHHHHHHHTTHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHhH
Confidence 3445556666777788888877666553 5555554 8999999999999999999999999
Q ss_pred HHHHhhhchhHHHHHHHHHHHHHHHHH---HhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHH
Q 010185 101 SVVTRMYGRKMSMTVGGISFLIGAIIN---GAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMA 177 (516)
Q Consensus 101 g~l~dr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~ 177 (516)
|+++||+|||+++.++.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+
T Consensus 82 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 82 GILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHH
Confidence 999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc-cccCC----------------------cchhHHHHHhHHHHHHHHHhhcc--CCCChHHHHhc
Q 010185 178 ITIGILIANLVNYGTA-KISGG----------------------WGWRVSLALAAVPAILMTVGSFF--LPDTPNSILER 232 (516)
Q Consensus 178 ~~~G~~i~~~i~~~~~-~~~~~----------------------~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~ 232 (516)
..+|.++++.+++.+. ...+. .+||+.|++.+++.++..+..++ .||+++...
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-- 239 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNH-- 239 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCC--
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccc--
Confidence 9999999999988876 44321 01999998877776655544333 566552100
Q ss_pred CCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHH-HH
Q 010185 233 GHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVL-FK 311 (516)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 311 (516)
+.+ ++++.+.++++++++ ++.+... +..+...........+.|.+ .+
T Consensus 240 -~~~---------------------------~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 287 (438)
T 3o7q_A 240 -SDA---------------------------KQGSFSASLSRLARI---RHWRWAV-LAQFCYVGAQTACWSYLIRYAVE 287 (438)
T ss_dssp -CCS---------------------------STTSHHHHHHHHTTC---SHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccc---------------------------cccchhhhHHHHHhC---hHHHHHH-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 000 000111223344442 2333332 33333444455666777777 77
Q ss_pred hc-CCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHH
Q 010185 312 TI-GFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVL 390 (516)
Q Consensus 312 ~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (516)
+. |++..+++.......++.+++.++.+++.||++||+.+..+..+..++.+++... ......
T Consensus 288 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 351 (438)
T 3o7q_A 288 EIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----------------GGHVGL 351 (438)
T ss_dssp HSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc----------------CCcHHH
Confidence 75 9999999999999999999999999999999999999988887777766655441 122223
Q ss_pred HHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcc-hhhHHHHHHHHHHHHHHH
Q 010185 391 FLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFK-FGLFFFFAGFVAVMTVFV 469 (516)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~ 469 (516)
....+.+.+ .....+....+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.+..+ +...+.+.+++.+...+.
T Consensus 352 ~~~~~~g~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 352 IALTLCSAF-MSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp HHHHHHHHH-HTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 333333333 3344567777777899966 888888876 677999999999999999988 766666655555544443
Q ss_pred hh
Q 010185 470 FY 471 (516)
Q Consensus 470 ~~ 471 (516)
.+
T Consensus 429 ~~ 430 (438)
T 3o7q_A 429 AR 430 (438)
T ss_dssp HT
T ss_pred HH
Confidence 33
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.5e-32 Score=273.84 Aligned_cols=395 Identities=12% Similarity=0.065 Sum_probs=252.6
Q ss_pred CccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhh-hchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhccccc
Q 010185 72 SAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRM-YGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 72 ~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 150 (516)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 34569999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred ccchhhhhhccCCcCc--cchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccC-CC---
Q 010185 151 NQVVPVYLSEMAPAKV--RGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFL-PD--- 224 (516)
Q Consensus 151 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e--- 224 (516)
.+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+.. +||+.|++.++..++..+...+. |+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~---g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAA---GYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 677888899999999999999998877543 89999999877766655443321 11
Q ss_pred -ChHHHHhcCCHHHHHHHHHH----------------HhCCCCcHHHHHHHHH-----H-HHHhhhccCchhhhhccCCc
Q 010185 225 -TPNSILERGHVDEAKKMLQK----------------IRGTPNVDEEFQDLYD-----A-SEAAKQVHHPWTNILRGRYR 281 (516)
Q Consensus 225 -~p~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~ 281 (516)
..+....+.+.++.++..+. ..+..+.+........ . .......+.........+..
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRV 282 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 11000111122233332221 1111111111100000 0 00000000000000000111
Q ss_pred chHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHH-----hhh
Q 010185 282 PQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFL-----EGG 355 (516)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~-----~~~ 355 (516)
.. .....+..+.....+.....+.|.+.++ .+.+..+.+.......+..+++.++.+++.||++||+... .+.
T Consensus 283 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~ 361 (491)
T 4aps_A 283 VS-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGL 361 (491)
T ss_dssp TT-HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHH
Confidence 11 1222222222223333445556666655 5776667788888889999999999999999999986654 555
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHH
Q 010185 356 VQMFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIF 435 (516)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 435 (516)
.+.+++.+++......... ..+.+.+.......+.+.+ .....+....++.|.+|++.|+++.|+.+....+|
T Consensus 362 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 362 MFAGLSFLLMAIPGALYGT------SGKVSPLWLVGSWALVILG-EMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHTTTHHHHHHCCC------CTTCCTHHHHHHHHHHHHH-HHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCC------CCCccHHHHHHHHHHHHHH-HHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 5555555554443211000 0011222233333333333 33445666778889999999999999999999999
Q ss_pred HHHHHHHhHHHHhhcchhhHHHHHHHHHHHHHHHhhcccCCC
Q 010185 436 TFVVGQVFLSMLCHFKFGLFFFFAGFVAVMTVFVFYMVPETR 477 (516)
Q Consensus 436 ~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (516)
..+++.+.+.+.+......+..+++++.+.+++.++..++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998887654445555566666565555555544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=9.8e-34 Score=273.82 Aligned_cols=361 Identities=12% Similarity=0.114 Sum_probs=263.9
Q ss_pred HHHHHHHHhhhhcccccccccchhhhhhhhchhhhhhcccCCCCCccccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh
Q 010185 28 LVAAMGGLLFGYDLGISGGVTSMDQFLKDFFPKVYRKQLNKGHESAYCKFDSQLLTLFTSSLYLAALVASFFASVVTRMY 107 (516)
Q Consensus 28 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~ 107 (516)
+.++++.+..+++.....+.. |.+.+++ |.++.+.+++.+.+.++..+++++.|+++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------------------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~ 62 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAI--ADMARDL------------------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRV 62 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HHHHTTS------------------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHhhhh--HHHHHHc------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777776665443 4454444 88999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHH
Q 010185 108 GRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANL 187 (516)
Q Consensus 108 Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~ 187 (516)
|||+++..+.++.+++.++++++++++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|..++|.
T Consensus 63 g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 142 (375)
T 2gfp_A 63 GRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPL 142 (375)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccccCCcchhHHHHHhHHHHHHHHHh-hccCCCChHHHHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhh
Q 010185 188 VNYGTAKISGGWGWRVSLALAAVPAILMTVG-SFFLPDTPNSILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAK 266 (516)
Q Consensus 188 i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (516)
+++.+.+. .+||+.|++.+++.++..+. .+++||+|++..+ ++
T Consensus 143 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~ 186 (375)
T 2gfp_A 143 IGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVDAP---------------------------------RT 186 (375)
T ss_dssp HHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTCC---------------------------------CC
T ss_pred HHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCcc---------------------------------cc
Confidence 98887644 38999999988888777664 4458887632100 01
Q ss_pred hccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHHHHHh-cCCCchhHHHHHHHHHHHHHHHhHhHhhhhccc
Q 010185 267 QVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPVLFKT-IGFGAEASLMSAVITGVVNVVATLVSVFSVDKF 345 (516)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 345 (516)
+.+.++++.+++ ++.+. ..+..+...........+.|.+.++ .|.++.+.+.......++.+++.++.+++.||.
T Consensus 187 ~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~ 262 (375)
T 2gfp_A 187 RLLTSYKTLFGN---SGFNC-YLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRF 262 (375)
T ss_dssp CTTTCSTHHHHH---HHHHH-HHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHH
T ss_pred cHHHHHHHHhcC---cchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112334444442 22222 2233333344445566666766655 788899999999999999999999999999998
Q ss_pred CCchHHHhhhHH-HHHHHHHHHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhh
Q 010185 346 GRRVLFLEGGVQ-MFICQCLVGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAG 424 (516)
Q Consensus 346 g~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 424 (516)
+++ +..+... ...+..++...... ..+.+.......+.+.+.+ ...+....+..|..| +.|+++
T Consensus 263 ~~~--~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~p-~~~g~~ 327 (375)
T 2gfp_A 263 STL--MWQSVICCLLAGLLMWIPDWFG-----------VMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPFP-FLAGTA 327 (375)
T ss_dssp HHH--HHHHHHHHHHTSSSSSHHHHHH-----------HHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHHH-HHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHHhhhc-----------cccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhCC-cccchH
Confidence 872 2222222 22222211111000 0122222233333333333 335666777789988 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 425 QAINVSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 425 ~g~~~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
.|+.+....++..++|.+.+.+.+..++...+.+.++..
T Consensus 328 ~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 328 GALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 999999999999999999999988777666665544443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=1.9e-28 Score=247.63 Aligned_cols=142 Identities=13% Similarity=0.205 Sum_probs=129.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhHHHHhhh-chhHHHHHHHHHHHHHHHHHHhch-hhhHHHHHHHhhhhcccccccch
Q 010185 77 FDSQLLTLFTSSLYLAALVASFFASVVTRMY-GRKMSMTVGGISFLIGAIINGAAV-NIAMLIIGRLMLGVGVGFANQVV 154 (516)
Q Consensus 77 ~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 154 (516)
++..+.+++.+++.++..+++++.|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhccCCcCccchhHHH---HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 155 PVYLSEMAPAKVRGALNIG---FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 155 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
.+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+. .+||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 8999999999999998877643 38999999988877766555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=1.1e-28 Score=241.41 Aligned_cols=355 Identities=12% Similarity=0.061 Sum_probs=218.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHH---HHHHhchhh-hHHHHHHHhhhhccccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGA---IINGAAVNI-AMLIIGRLMLGVGVGFA 150 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~~~~ 150 (516)
+|+++.+.|++.+.+.+++.++++++|+++||+|||++++++..+++++. ..+.+++.. ..++..+++.|++.+..
T Consensus 38 ~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 117 (417)
T 2cfq_A 38 NHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFC 117 (417)
T ss_dssp TCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999888776532 222333322 12445677777766665
Q ss_pred ccchhhhhhccCCc--CccchhHHHHHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhccCCCChHH
Q 010185 151 NQVVPVYLSEMAPA--KVRGALNIGFQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFFLPDTPNS 228 (516)
Q Consensus 151 ~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 228 (516)
.+.....+.++.++ ++|+...+....+..+|..++|.+++.+... +||+.|++.++..++..+..++.+|+|++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~----~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 118 FNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI----NNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHH----CSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHh----chhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 55555555555543 3457777888778889999999998877643 79999998877765555555554443311
Q ss_pred HHhcCCHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHhhhccCchhhhhccCCcchHHHHHHHHHHHHhhhhHHHHHhHHH
Q 010185 229 ILERGHVDEAKKMLQKIRGTPNVDEEFQDLYDASEAAKQVHHPWTNILRGRYRPQLTMCTLIPFFQQFTGINVIMFYAPV 308 (516)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (516)
+.+.++.. ..+. ++....+++++++ +++.+..... .+.....+.....+.|.
T Consensus 194 ---~~~~~~~~-------~~~~--------------~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 194 ---SATVANAV-------GANH--------------SAFSLKLALELFR---QPKLWFLSLY-VIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp ---SSCSSSSS-------SSCC--------------CCCCHHHHHHHTT---CHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred ---cccccccc-------cccc--------------ccccHHHHHHHhc---CCchhhHHHH-HHHHHHHHHHHHHHHHH
Confidence 00000000 0000 0000011222333 2222222222 22222223333344665
Q ss_pred HHHh-cC---CCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHhcCCCCCCCcccc
Q 010185 309 LFKT-IG---FGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALKFGLRGEGTLTKF 384 (516)
Q Consensus 309 ~~~~-~g---~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (516)
++++ ++ .+....+.......++.+++.++.++++||++||+.+..+..+.++..+++... +
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~---------------~ 310 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA---------------T 310 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC---------------C
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh---------------c
Confidence 5554 22 223445677777788889999999999999999998887776666554443220 1
Q ss_pred hhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHH-HHHHHHHHHHHHHHhHHHHhhcchhhHHHHHHHHH
Q 010185 385 DADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAIN-VSTNMIFTFVVGQVFLSMLCHFKFGLFFFFAGFVA 463 (516)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (516)
+.+..+....+...... ...+..+.+++|.+|++.|+++.++. +....+|++++|.+.|.+.+..++...+.+.++..
T Consensus 311 ~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~ 389 (417)
T 2cfq_A 311 SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389 (417)
T ss_dssp SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHH
Confidence 22222222222222211 22233456888999999999999994 78889999999999999999877655555544444
Q ss_pred HHHHH-HhhcccCCC
Q 010185 464 VMTVF-VFYMVPETR 477 (516)
Q Consensus 464 ~~~~~-~~~~~~~~~ 477 (516)
+.+.+ .+...+|++
T Consensus 390 l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 390 LGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHTTSSCCSC
T ss_pred HHHHHHHHhhhcCCC
Confidence 44443 344444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.43 E-value=3.1e-12 Score=125.62 Aligned_cols=154 Identities=7% Similarity=-0.063 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHH
Q 010185 285 TMCTLIPFFQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~ 364 (516)
+....+.++.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+..+.+++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44444445555555566777788888999999999999999999999999999999999999999999999998888887
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFL 444 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 444 (516)
....... ++.+..++..++.+.+ .....+....++.|.+|++.|+++.++.+....+|..++|.+.+
T Consensus 108 ~~~~~~~------------~~~~~l~~~~~l~G~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~ 174 (438)
T 3o7q_A 108 FWPAAEI------------MNYTLFLVGLFIIAAG-LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQ 174 (438)
T ss_dssp HHHHHHT------------TCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhcccc------------ccHHHHHHHHHHHHhh-HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7432111 1223333333333333 33445566788889999999999999999999999999999999
Q ss_pred HHH-hhcc
Q 010185 445 SML-CHFK 451 (516)
Q Consensus 445 ~~~-~~~g 451 (516)
.+. +..+
T Consensus 175 ~l~~~~~~ 182 (438)
T 3o7q_A 175 SLILSNVP 182 (438)
T ss_dssp HHHHTSSC
T ss_pred HHHhcccc
Confidence 988 4443
No 9
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.38 E-value=2.1e-12 Score=123.99 Aligned_cols=169 Identities=12% Similarity=0.048 Sum_probs=126.0
Q ss_pred HHHhhhhHHHHHhHHHHHHhcCCCchhHHHHHHHHHHHHHHHhHhHhhhhcccCCchHHHhhhHHHHHHHHHHHHHHHHh
Q 010185 293 FQQFTGINVIMFYAPVLFKTIGFGAEASLMSAVITGVVNVVATLVSVFSVDKFGRRVLFLEGGVQMFICQCLVGIMLALK 372 (516)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~ 372 (516)
+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---- 85 (375)
T 2gfp_A 10 AVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----
Confidence 3344445556666777888899999999999999999999999999999999999999999988888888777653
Q ss_pred cCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHhhcch
Q 010185 373 FGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAINVSTNMIFTFVVGQVFLSMLCHFKF 452 (516)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~~~~~~g~ 452 (516)
++...+.......+.......+....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|
T Consensus 86 ------------~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 86 ------------SSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------ccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 22222222233333333334566677888999999999999999999999999999999999888787
Q ss_pred hhHHHHHHHHHHHHHH-HhhcccCCC
Q 010185 453 GLFFFFAGFVAVMTVF-VFYMVPETR 477 (516)
Q Consensus 453 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 477 (516)
...+.+.++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6655555444444433 444555543
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.37 E-value=1.6e-12 Score=126.72 Aligned_cols=146 Identities=14% Similarity=0.168 Sum_probs=123.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHhhhhcccccccchhhh
Q 010185 78 DSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAAVNIAMLIIGRLMLGVGVGFANQVVPVY 157 (516)
Q Consensus 78 s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 157 (516)
+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999999998888888888888888888888888877777777899
Q ss_pred hhccCCcCccchhHHH-HHHHHHHHHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc-CCCCh
Q 010185 158 LSEMAPAKVRGALNIG-FQMAITIGILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF-LPDTP 226 (516)
Q Consensus 158 i~~~~~~~~r~~~~~~-~~~~~~~G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p 226 (516)
+.|.+|++.|+++.+. ++....+|..++|.+++.+.+. .+++..|.+.+++.++..+..++ .||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 4788889999999998877643 37888998888887776655444 66654
No 11
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.36 E-value=6.6e-12 Score=123.78 Aligned_cols=144 Identities=15% Similarity=0.092 Sum_probs=126.2
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHhhHHHHhhh--chhHHHHHHHHHHH-HHHHHHHhc--hhhhHHHHHHHhhhhcccc
Q 010185 75 CKFDSQLLTLFTSSLYLAALVASFFASVVTRMY--GRKMSMTVGGISFL-IGAIINGAA--VNIAMLIIGRLMLGVGVGF 149 (516)
Q Consensus 75 ~~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~~~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~~~ 149 (516)
+|.+..+.+++.+...++..++.++.|+++||+ |||+.+.++.++.. ++.++..+. .+.+.+.+..++.|++.+.
T Consensus 283 ~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 362 (451)
T 1pw4_A 283 KHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYG 362 (451)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHTH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhc
Confidence 488999999999999999999999999999999 99999988887777 777777666 3778888888999999998
Q ss_pred cccchhhhhhccCCcCccchhHHHHHHHHHH-HHHHHHHHHhhhccccCCcchhHHHHHhHHHHHHHHHhhcc
Q 010185 150 ANQVVPVYLSEMAPAKVRGALNIGFQMAITI-GILIANLVNYGTAKISGGWGWRVSLALAAVPAILMTVGSFF 221 (516)
Q Consensus 150 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~-G~~i~~~i~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 221 (516)
..+....++.|.+|+++|++++++......+ |..++|.+.+.+.+.. +|+..|++.+++.++..++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999 9999999988876543 8999999988887776665554
No 12
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.33 E-value=2.1e-11 Score=122.65 Aligned_cols=160 Identities=11% Similarity=0.033 Sum_probs=116.5
Q ss_pred hhHHHHHhHHHH-HHhcC------CCchhHHHHHHHHHHHHHHHhHhHhhhhccc-CCchHHHhhhHHHHHHHHHHHHHH
Q 010185 298 GINVIMFYAPVL-FKTIG------FGAEASLMSAVITGVVNVVATLVSVFSVDKF-GRRVLFLEGGVQMFICQCLVGIML 369 (516)
Q Consensus 298 ~~~~~~~~~~~~-~~~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~r~~~~~~~~~~~~~~~~~~~~~ 369 (516)
.++....+.+.+ .+++| ++..+.++..+...++..++.++.|+++||+ |||+.+..+.++..++.+++...
T Consensus 27 ~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~- 105 (524)
T 2xut_A 27 SFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF- 105 (524)
T ss_dssp HHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh-
Confidence 334455555544 45678 9999999999999999999999999999999 99999998888888877776652
Q ss_pred HHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhhhhhhHHH---HHHHHHHHHHHHHHHhHHH
Q 010185 370 ALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEIRSAGQAI---NVSTNMIFTFVVGQVFLSM 446 (516)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~i~~~~~~~~ 446 (516)
+.+.+.......+. +.......+....++.|.+|++.|+++.+. .+....+|..++|.+.+.+
T Consensus 106 -------------~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l 171 (524)
T 2xut_A 106 -------------EHSVQGFYTGLFLI-ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLL 171 (524)
T ss_dssp -------------SSCHHHHHHHHHHH-HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHH
T ss_pred -------------cccHHHHHHHHHHH-HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00222233333333 333334456777888899999999876666 8889999999999999999
Q ss_pred HhhcchhhHHHHHHHHHHHHHHHhhc
Q 010185 447 LCHFKFGLFFFFAGFVAVMTVFVFYM 472 (516)
Q Consensus 447 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (516)
.+..++...+.+.++..+.+.+..+.
T Consensus 172 ~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 172 LKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred hccccHHHHHHHHHHHHHHHHHHHHH
Confidence 98888776666555555554444433
No 13
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.33 E-value=1.7e-11 Score=122.34 Aligned_cols=164 Identities=13% Similarity=0.099 Sum_probs=119.1
Q ss_pred HHHHhhhhHHHHHhHHHH-HHh-----cCCCchhHHHHHHHHHHHHHHHhHhHhhhhcc-cCCchHHHhhhHHHHHHHHH
Q 010185 292 FFQQFTGINVIMFYAPVL-FKT-----IGFGAEASLMSAVITGVVNVVATLVSVFSVDK-FGRRVLFLEGGVQMFICQCL 364 (516)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~-~~~-----~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~r~~~~~~~~~~~~~~~~ 364 (516)
.+.....++....+.+.+ .+. +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+..+..++.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~ 101 (491)
T 4aps_A 22 EMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIV 101 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 333333444454445544 444 89999999999999999999999999999999 89999999998888887776
Q ss_pred HHHHHHHhcCCCCCCCcccchhHHHHHHHHHHHHhhhcCcccccceeecccCchhh--hhhhHHHHHHHHHHHHHHHHHH
Q 010185 365 VGIMLALKFGLRGEGTLTKFDADFVLFLICAYVAAFAWSWGPLGWLVPSEVCALEI--RSAGQAINVSTNMIFTFVVGQV 442 (516)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~i~~~~ 442 (516)
+... ++.+.......+.+.+ .....+....++.|.+|++. |+.+.++.+....+|..++|.+
T Consensus 102 ~~~~---------------~~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~ 165 (491)
T 4aps_A 102 LALP---------------FGASALFGSIILIIIG-TGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI 165 (491)
T ss_dssp HHSC---------------CSTTHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh---------------hhHHHHHHHHHHHHHH-HHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH
Confidence 6541 1223333333333333 33345667788889999988 7788888999999999999999
Q ss_pred hHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010185 443 FLSMLCHFKFGLFFFFAGFVAVMTVFVFY 471 (516)
Q Consensus 443 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (516)
.+.+.+..+|...+...++..+.+.+..+
T Consensus 166 ~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 166 VGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999988887666665555444444433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=1.4e-09 Score=108.26 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=106.6
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHhhHHHHhhhchhHHHHHHHHHHHHHHHHHHhc-----hhhhHHHHHH-Hhhhhcccc
Q 010185 76 KFDSQLLTLFTSSLYLAALVASFFASVVTRMYGRKMSMTVGGISFLIGAIINGAA-----VNIAMLIIGR-LMLGVGVGF 149 (516)
Q Consensus 76 ~~s~~~~~~~~s~~~l~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~r-~l~G~~~~~ 149 (516)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+...- +..+++ ..
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA-MS 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH-hH
Confidence 4566666777777888899999999999999999999999988888877766543 1122222222 222222 23
Q ss_pred cccchhhhhhccCCcCccchhHHHHHHHHHHHHHHHHHHHhhhccc---cCCcchhHHHHHhHHHHHHHHHhh-ccCCCC
Q 010185 150 ANQVVPVYLSEMAPAKVRGALNIGFQMAITIGILIANLVNYGTAKI---SGGWGWRVSLALAAVPAILMTVGS-FFLPDT 225 (516)
Q Consensus 150 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~i~~~i~~~~~~~---~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~ 225 (516)
..+....+.+|.+|.+.|++++++......+|..+++.+...+... ....++.+.|++.++++++..+.. +++|||
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4466778999999999999999999999999988887764443221 011245667888888877766554 559999
Q ss_pred h
Q 010185 226 P 226 (516)
Q Consensus 226 p 226 (516)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 6
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=60.86 E-value=4.9 Score=19.45 Aligned_cols=14 Identities=21% Similarity=0.430 Sum_probs=11.4
Q ss_pred hhHHHHhhhchhHH
Q 010185 99 FASVVTRMYGRKMS 112 (516)
Q Consensus 99 ~~g~l~dr~Grr~~ 112 (516)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.82 E-value=1.4e+02 Score=24.66 Aligned_cols=25 Identities=12% Similarity=0.170 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhHHHHhhhchh
Q 010185 86 TSSLYLAALVASFFASVVTRMYGRK 110 (516)
Q Consensus 86 ~s~~~l~~~i~~~~~g~l~dr~Grr 110 (516)
+.-|.+|..+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 4567788888999999999997643
Done!