Query 010187
Match_columns 516
No_of_seqs 285 out of 1254
Neff 5.9
Searched_HMMs 29240
Date Mon Mar 25 21:47:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010187.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010187hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 5.7E-43 2E-47 351.9 11.4 246 210-514 5-262 (276)
2 1g9r_A Glycosyl transferase; a 100.0 3.6E-40 1.2E-44 335.9 12.3 245 211-513 1-261 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 4.1E-26 1.4E-30 235.2 9.3 218 210-513 4-229 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 4.9E-25 1.7E-29 220.4 7.6 142 329-512 82-229 (263)
5 1o7q_A N-acetyllactosaminide a 72.9 47 0.0016 33.1 13.0 127 338-475 133-261 (289)
6 3ioh_A Histo-blood group ABO s 50.5 2E+02 0.007 28.6 13.3 123 339-475 143-270 (298)
7 3pmr_A Amyloid-like protein 1; 34.7 53 0.0018 31.4 5.6 30 134-163 66-95 (219)
8 2lse_A Four helix bundle prote 36.6 11 0.00037 30.3 0.0 53 91-149 7-61 (101)
9 3umh_A Amyloid beta A4 protein 29.4 57 0.002 31.0 4.8 30 134-163 59-88 (211)
10 1dip_A Delta-sleep-inducing pe 16.7 1.7E+02 0.0059 23.2 4.4 41 139-182 17-57 (78)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=5.7e-43 Score=351.88 Aligned_cols=246 Identities=17% Similarity=0.205 Sum_probs=166.1
Q ss_pred cceEEEEeCCcc--hhHHHHHHHHhhcCCCCceEEEEEeCCCCcccchhhhhhcccccchhhhccccccccccccchhHH
Q 010187 210 FHHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (516)
Q Consensus 210 ~ihIv~~sDn~l--aasVvI~Siv~Ns~~p~~ivFHIitD~~~~~am~~wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (516)
.+|||+++|+.+ .++|+|+|+++|+++ ++++|||++++++.+..+.....
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~--------------------------- 56 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGED--------------------------- 56 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHH---------------------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHH---------------------------
Confidence 589999999865 399999999999986 67999999999985432111000
Q ss_pred HHHHHHHHHHHHhhccCcccccccchhhhhhcccCCCCccchhhHHHHhhccccC-CCCeEEEEecCeeeccCchHHhcc
Q 010187 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLEL 366 (516)
Q Consensus 288 ~~l~~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~~S~~~y~Rf~LPellP-~ldKVLYLD~DvVV~~DLseLw~i 366 (516)
...+.....+..++ ++.+. . ....+++|..+|+||++|+++| +++||||||+|+||++||++||++
T Consensus 57 ---------~~~~~~~i~~~~~~-~~~~~-~--~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~ 123 (276)
T 3tzt_A 57 ---------LKKFSYTLYPIRAT-DDLFS-F--AKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT 123 (276)
T ss_dssp ---------HHTTTCEEEEEECC-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC
T ss_pred ---------HHHcCCEEEEEEeC-HHHHh-c--CccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc
Confidence 00000000000111 00011 0 1123578999999999999999 699999999999999999999999
Q ss_pred CCCCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCC
Q 010187 367 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGL 446 (516)
Q Consensus 367 DL~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~ 446 (516)
|++|+++|||+||.... ..+..+ ..+++...+|||||||||||++||+.++++++++|++++.. .+
T Consensus 124 dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~-~~ 189 (276)
T 3tzt_A 124 DISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHM-NL 189 (276)
T ss_dssp CCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----
T ss_pred CCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccc-cc
Confidence 99999999999997531 111111 11233445999999999999999999999999999998753 46
Q ss_pred CcCCCCCCChhhhhcCCcEEEcCC-ccccccCCCCch-h------h-hhhhcCCCeEEeeeCCCCCCccCCCCCCCC
Q 010187 447 ELWQPGALPPALLALDGNVHPIDP-SWHVAELGQRSL-E------A-HEETLKSAAVLHFSGPAKPWLEIGLPEKRP 514 (516)
Q Consensus 447 ~~~DQd~LN~~ll~F~~~~~~L~~-~WN~~~lgy~~~-~------~-~~~~i~~~~IIHy~G~~KPW~~~~~~~yr~ 514 (516)
.++|||+|| ++|.+++++||+ +||+++ |+... . . .....++|+||||+|+.|||...+.++||+
T Consensus 190 ~~~DQd~LN---~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~ 262 (276)
T 3tzt_A 190 LLPDQDILN---AMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTS 262 (276)
T ss_dssp ----CHHHH---HHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHH
T ss_pred cCCChhHHH---HHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHH
Confidence 789999999 589999999999 999986 33210 0 0 123457899999999999999999999875
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=3.6e-40 Score=335.93 Aligned_cols=245 Identities=20% Similarity=0.288 Sum_probs=177.8
Q ss_pred ceEEEEeCCcc--hhHHHHHHH-HhhcCCCCceEEEEEeCCCCcccchhhhhhcccccchhhhccccccccccccchhHH
Q 010187 211 HHVVLLTDNVL--AASVVVSST-VQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (516)
Q Consensus 211 ihIv~~sDn~l--aasVvI~Si-v~Ns~~p~~ivFHIitD~~~~~am~~wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (516)
||||+++|+.+ .++|+++|+ +.|+. .+++|||++|+++.+..+..-..-...+..|+
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~~~~~~~~~i~------------------ 60 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAANLRGGGGNIR------------------ 60 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHHHSGGGTTTEE------------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHHHHHHcCCEEE------------------
Confidence 69999999855 389999999 88874 47999999999886432111100000000000
Q ss_pred HHHHHHHHHHHHhhccCcccccccchhhhhhcccCCCCccchhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccC
Q 010187 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELD 367 (516)
Q Consensus 288 ~~l~~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~~S~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iD 367 (516)
...++ +..+. .+. ...+++|..+|+||++|++||+++||||||+|+||++||++||++|
T Consensus 61 ------------------~~~~~-~~~~~-~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~ 119 (311)
T 1g9r_A 61 ------------------FIDVN-PEDFA-GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTD 119 (311)
T ss_dssp ------------------EEECC-GGGGT-TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCC
T ss_pred ------------------EEEcC-HHHHh-cCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccC
Confidence 00111 00010 011 1236789999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCC
Q 010187 368 LNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLE 447 (516)
Q Consensus 368 L~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~~ 447 (516)
++|+++|||+||.... .+.+...++ +++..+||||||||+|+++||+.++++++++|++++.. ...
T Consensus 120 l~~~~~aav~d~~~~~----~~~~~~~~~---------~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~~-~~~ 185 (311)
T 1g9r_A 120 LGDNWLGASIDLFVER----QEGYKQKIG---------MADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKD-VMQ 185 (311)
T ss_dssp CTTCSEEEEECHHHHT----STTHHHHTT---------CCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTT-TCS
T ss_pred CCCcEEEEEeccchhh----hHHHHHhcC---------CCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhccC-cCc
Confidence 9999999999986421 112233333 34467899999999999999999999999999998753 467
Q ss_pred cCCCCCCChhhhhcCCcEEEcCCccccccCCC---Cc--------hhh--hhhhcCCCeEEeeeCCCCCCccCCCCCCC
Q 010187 448 LWQPGALPPALLALDGNVHPIDPSWHVAELGQ---RS--------LEA--HEETLKSAAVLHFSGPAKPWLEIGLPEKR 513 (516)
Q Consensus 448 ~~DQd~LN~~ll~F~~~~~~L~~~WN~~~lgy---~~--------~~~--~~~~i~~~~IIHy~G~~KPW~~~~~~~yr 513 (516)
+.|||+|| .+|.++++.||.+||++..++ .. ... ..+..++++||||+|+.|||...+.+.++
T Consensus 186 ~~DQd~lN---~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~ 261 (311)
T 1g9r_A 186 YQDQDILN---GLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGA 261 (311)
T ss_dssp SHHHHHHH---HHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTT
T ss_pred cCCcCHHH---HHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccH
Confidence 89999998 579999999999999985221 00 000 12234688999999999999988766543
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.92 E-value=4.1e-26 Score=235.15 Aligned_cols=218 Identities=17% Similarity=0.170 Sum_probs=143.9
Q ss_pred cceEEEEeCCcc--hhHHHHHHHHhhcCCCCceEEEEEeCCCCcccchhhhhhcccccchhhhccccccccccccchhHH
Q 010187 210 FHHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 287 (516)
Q Consensus 210 ~ihIv~~sDn~l--aasVvI~Siv~Ns~~p~~ivFHIitD~~~~~am~~wf~~n~~~~a~v~v~ni~~F~wl~~~~~~vl 287 (516)
..+|++++|+.| .+.|++.|+..|+.+ .+++| +++++++.+..+..-. ... +|..++..+
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~---~~~---~v~~v~~l~---------- 65 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEI---VFD---EVITVDILD---------- 65 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHH---HCS---EEEECCTTS----------
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHH---hCC---EEEEEeecC----------
Confidence 467888888744 388899999999865 45666 6777876533211110 000 111111000
Q ss_pred HHHHHHHHHHHHhhccCcccccccchhhhhhcccCCCCccchhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccC
Q 010187 288 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELD 367 (516)
Q Consensus 288 ~~l~~~~~i~~~y~~~~~~~~i~~p~~~~~~l~~~~~~~~S~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iD 367 (516)
.+ ....+.... ......+|+||++|++ ++++||||||+|+||.+||++||+++
T Consensus 66 -----------------------~~--~~~~~~~~~-~~~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~~ 118 (333)
T 1ll2_A 66 -----------------------SG--DSAHLTLMK-RPELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFERE 118 (333)
T ss_dssp -----------------------TT--STTHHHHHH-CGGGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGSC
T ss_pred -----------------------Cc--chhhccccc-ccchHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCCC
Confidence 00 000010000 1124578999999996 78999999999999999999999986
Q ss_pred CCCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCC
Q 010187 368 LNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLE 447 (516)
Q Consensus 368 L~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~~ 447 (516)
.+|||.|.+ + .+||||||||||++. +..+++++++.++. .+.
T Consensus 119 ----~~aAv~d~~----------------~------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~--~~~ 160 (333)
T 1ll2_A 119 ----ELSAAPDPG----------------W------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG--SFD 160 (333)
T ss_dssp ----SSEEEECSS----------------S------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC--CTT
T ss_pred ----ceeEEecCC----------------C------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC--CCC
Confidence 478887742 1 158999999998753 34466777777653 467
Q ss_pred cCCCCCCChhhhhcCCcE-----EEcCCccccccCC-CCchhhhhhhcCCCeEEeeeCCCCCCccCCCCCCC
Q 010187 448 LWQPGALPPALLALDGNV-----HPIDPSWHVAELG-QRSLEAHEETLKSAAVLHFSGPAKPWLEIGLPEKR 513 (516)
Q Consensus 448 ~~DQd~LN~~ll~F~~~~-----~~L~~~WN~~~lg-y~~~~~~~~~i~~~~IIHy~G~~KPW~~~~~~~yr 513 (516)
++|||+||. +|.+.. +.||.+||++... |..........++++||||+|..|||.....++++
T Consensus 161 ~~DQ~~LN~---~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~ 229 (333)
T 1ll2_A 161 GGDQGLLNT---FFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTK 229 (333)
T ss_dssp SSHHHHHHH---HTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTT
T ss_pred CCCHHHHHH---HHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCcc
Confidence 889999994 676533 7899999998532 32211012345789999999999999987666554
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.91 E-value=4.9e-25 Score=220.37 Aligned_cols=142 Identities=17% Similarity=0.172 Sum_probs=110.9
Q ss_pred hhhHHHHhhccccCCCCeEEEEecCeeeccCchHHhccCCCCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCC
Q 010187 329 LMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDH 408 (516)
Q Consensus 329 ~~~y~Rf~LPellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~ 408 (516)
..+|.|++++++. +++||||||+|++|.+||++||+++ .+|||.|.+ +
T Consensus 82 ~~~~~kl~~~~l~-~~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~----------------~----------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLT-QYSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPG----------------W----------- 129 (263)
T ss_dssp GGGGGGGGGGGCT-TCSEEEEECTTEEECSCCGGGGGSC----SSEEEECTT----------------S-----------
T ss_pred hHHhHHHHhcccc-CcceEEEEcCCEeeccCHHHHhCCC----cceEeccCC----------------C-----------
Confidence 4678999999987 4899999999999999999999987 478888742 1
Q ss_pred CCcccccceeeeehHHHHHhhHHHHHHHHHHHhccCCCCcCCCCCCChhhhhcCC-----cEEEcCCcccccc-CCCCch
Q 010187 409 DHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDG-----NVHPIDPSWHVAE-LGQRSL 482 (516)
Q Consensus 409 ~~~yfNsGVmLiNL~~WR~~nit~~~~~~l~~~~~~~~~~~DQd~LN~~ll~F~~-----~~~~L~~~WN~~~-lgy~~~ 482 (516)
..||||||||||++ .++.++++++++++. ...++|||+||. +|.+ .++.||..||++. ..|...
T Consensus 130 -~~~fNsGv~li~p~----~~~~~~l~~~~~~~~--~~~~~DQd~LN~---~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~ 199 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPS----VETYNQLLHLASEQG--SFDGGDQGILNT---FFSSWATTDIRKHLPFIYNLSSISIYSYL 199 (263)
T ss_dssp -TTSEEEEEEEECCC----HHHHHHHHHHHHHHC--CTTSSHHHHHHH---HTTTTTTSCGGGBCCGGGSEEHHHHHSSH
T ss_pred -CccccCeEEEEccc----HHHHHHHHHHHHhcC--CCCcccHHHHHH---HhccccccCeeEeCCcccccccchhcccc
Confidence 14899999999986 456777888887653 477899999994 6776 7899999999984 233322
Q ss_pred hhhhhhcCCCeEEeeeCCCCCCccCCCCCC
Q 010187 483 EAHEETLKSAAVLHFSGPAKPWLEIGLPEK 512 (516)
Q Consensus 483 ~~~~~~i~~~~IIHy~G~~KPW~~~~~~~y 512 (516)
....+..++++||||+|+.|||.....+.-
T Consensus 200 ~~~~~~~~~~~IIHf~g~~KPW~~~~~~~~ 229 (263)
T 3u2u_A 200 PAFKVFGASAKVVHFLGRVKPWNYTYDPKT 229 (263)
T ss_dssp HHHHHHGGGCSEEECCSSSCGGGSEEETTT
T ss_pred HHHHhhcCCeEEEEECCCCcCCCCCCCCCC
Confidence 112234578999999999999988655443
No 5
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=72.91 E-value=47 Score=33.07 Aligned_cols=127 Identities=14% Similarity=0.108 Sum_probs=75.9
Q ss_pred ccccCCCCeEEEEecCeeeccCchHHhccCCCCCeEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccce
Q 010187 338 PELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGM 417 (516)
Q Consensus 338 PellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~~~~~~~~Lnfs~P~i~~~~d~~~~yfNsGV 417 (516)
.+++.+.|-+.++|.|+++++++..= .| |..+|...-........ .-.|.+.- -|...| .++.+..|+.+|+
T Consensus 133 ~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~~~-~fpYERrp-~S~AyI--p~~eGdfYY~Ga~ 204 (289)
T 1o7q_A 133 AHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKADPN-DFTYERRK-ESAAYI--PFGEGDFYYHAAI 204 (289)
T ss_dssp HTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSCGG-GSCCCCCT-TSTTCC--CTTCCSCCEEEEE
T ss_pred HHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCCCC-CCCCCCCc-Cceeee--cCCCCCEEEEcee
Confidence 45566899999999999999998541 22 45666654432211000 00011000 011112 3567889999998
Q ss_pred eeeehHHHHHhhHHHHHHHHHHHhccCCC--CcCCCCCCChhhhhcCCcEEEcCCccccc
Q 010187 418 NVLDLEAWRRTNITATYHKWLKLNLKSGL--ELWQPGALPPALLALDGNVHPIDPSWHVA 475 (516)
Q Consensus 418 mLiNL~~WR~~nit~~~~~~l~~~~~~~~--~~~DQd~LN~~ll~F~~~~~~L~~~WN~~ 475 (516)
+==-..+-.+ +++.|.+-+.+....++ ...|-.-||-.+ ..+...+.|++.|...
T Consensus 205 fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNKYf-~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 205 FGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKYF-LLNKPTKILSPEYCWD 261 (289)
T ss_dssp EEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred eCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhHHH-hhcCCCEEECHHHCCC
Confidence 8666665554 67777776655433232 355777788753 4456778899998876
No 6
>3ioh_A Histo-blood group ABO system transferase; GTA, cisab mutant, AA(Gly)B, rossman fold, unliganded, conformation, blood group antigen, glycoprotein; HET: GOL; 1.25A {Homo sapiens} SCOP: c.68.1.9 PDB: 3ioi_A* 3ioj_A* 3u0y_A* 3u0x_A* 1zhj_A* 2o1h_A* 2o1g_A* 3sx5_A* 3sx3_A* 2o1f_A 2rj6_A* 2rj5_A* 2rj7_A* 1zi4_A* 2y7a_A* 3sxb_A* 3sxa_A* 2riz_A 2rj0_A* 2rj1_A* ...
Probab=50.46 E-value=2e+02 Score=28.63 Aligned_cols=123 Identities=11% Similarity=0.176 Sum_probs=68.3
Q ss_pred cccCCCCeEEEEecCeeeccCchHHhccCCCCCeEEEEecCCCCCCCCCCccccccccc-CCccccC--CCCCCCccccc
Q 010187 339 ELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNF-SYPIISS--NFDHDHCAWLY 415 (516)
Q Consensus 339 ellP~ldKVLYLD~DvVV~~DLseLw~iDL~g~~iaAV~d~~~~~~~~~~~~~~~~Lnf-s~P~i~~--~~d~~~~yfNs 415 (516)
.++.+.|-+..+|.|+++++++..= .| |..+|...--... .-++.+.+ .+|.-.. .++.+..|+.+
T Consensus 143 ~~~~EvDyLfc~dvd~~F~~~vG~E---~L-g~lva~lHp~~y~-------~~~~~FpYERrp~S~AyIp~~eGdfYY~g 211 (298)
T 3ioh_A 143 RFLSEVDYLVCVDVDMEFRDHVGVE---IL-TPLFGTLHPGFYG-------SSREAFTYERRPQSQAYIPKDEGDFYYGG 211 (298)
T ss_dssp THHHHCSEEEEEESSEEECSCBCGG---GC-SSEEEEBCTTTTT-------SCGGGSCCCCCTTSTTCCCTTCCSCCBCT
T ss_pred HHhhcCCEEEEecCCCeeccCccHH---Hh-HhhHhhcChhhhc-------CCcccCcccCCccccccccCCCCCeEEee
Confidence 3555899999999999999987530 11 3344443322111 00011110 1111000 24567788888
Q ss_pred ceeeeehHHHHHhhHHHHHHHHHHHhccCCC--CcCCCCCCChhhhhcCCcEEEcCCccccc
Q 010187 416 GMNVLDLEAWRRTNITATYHKWLKLNLKSGL--ELWQPGALPPALLALDGNVHPIDPSWHVA 475 (516)
Q Consensus 416 GVmLiNL~~WR~~nit~~~~~~l~~~~~~~~--~~~DQd~LN~~ll~F~~~~~~L~~~WN~~ 475 (516)
|++==-..+-.+ +++.|++-+.+...+++ ...|-.-||-.+ ..+..++.|++.|++.
T Consensus 212 a~fGGt~~~vl~--Lt~~C~~~i~~D~~n~IeA~WhDESHLNKYf-l~hKPtKvLSPEY~Wd 270 (298)
T 3ioh_A 212 AFFGGSVQEVQR--LTRACHQAMMVDQANGIEAVWHDESHLNKYL-LRHKPTKVLSPEYLWD 270 (298)
T ss_dssp TEEEEEHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHHH-HHSCCSEEECGGGSBC
T ss_pred eecCCcHHHHHH--HHHHHHHHHHHHHhCCceEeccchhhhhhhh-hhcCCCceeCHHHcCC
Confidence 877544444433 66666665554332222 455777788753 3456679999998764
No 7
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=34.69 E-value=53 Score=31.42 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010187 134 DIKAFAFKTKAMLLKMEHEVQSSRQRESIY 163 (516)
Q Consensus 134 ~~~~~~~kl~~~~~~~ee~~~~~~~~~~~~ 163 (516)
|-.++.+...+++.++|++..+.|+|..-.
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL~et 95 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRLVET 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346889999999999999999988876543
No 8
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=36.62 E-value=11 Score=30.34 Aligned_cols=53 Identities=30% Similarity=0.383 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhcCCCCCCCccccccccHHHHHHHHhc--ccCCHHHHHHHHHHHHHHH
Q 010187 91 KLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTS--KRQDIKAFAFKTKAMLLKM 149 (516)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~kl~~~~~~~ 149 (516)
++.+.+.++|.|.++| .|+.+++ -++.+-...++ ..-|+++|+.|.|+-+.+|
T Consensus 7 klleklekildevtdg-apdeare-----rieklakdvkdeleegdaknmiekfrdemeqm 61 (101)
T 2lse_A 7 KLLEKLEKILDEVTDG-APDEARE-----RIEKLAKDVKDELEEGDAKNMIEKFRDEMEQM 61 (101)
Confidence 5777888889988886 3333332 22333333333 2367888888887655443
No 9
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=29.42 E-value=57 Score=31.02 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 010187 134 DIKAFAFKTKAMLLKMEHEVQSSRQRESIY 163 (516)
Q Consensus 134 ~~~~~~~kl~~~~~~~ee~~~~~~~~~~~~ 163 (516)
|-.++.+...+++.++|+++.+.|+|..-.
T Consensus 59 dkk~~~~rFQ~~v~aLE~E~~~ErqqL~et 88 (211)
T 3umh_A 59 DKKAVIQHFQEKVESLEQEAANERQQLVET 88 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 456899999999999999999988876543
No 10
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=16.68 E-value=1.7e+02 Score=23.24 Aligned_cols=41 Identities=17% Similarity=0.185 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCCCcccchhHHHH
Q 010187 139 AFKTKAMLLKMEHEVQSSRQRESIYWHLASHGVPKSLHCLCLKL 182 (516)
Q Consensus 139 ~~kl~~~~~~~ee~~~~~~~~~~~~~~la~~~~Pk~~hcl~~rl 182 (516)
+.-||..|..+||++.......++++++|+ |..+-=++.++
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~as---pEql~q~q~~l 57 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLAS---PEQLEKFQSRL 57 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTS---SSCSCCCSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHhcc
Confidence 346889999999999999999999999998 44454444444
Done!