Query 010188
Match_columns 516
No_of_seqs 161 out of 1193
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 21:48:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010188.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010188hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2iqj_A Stromal membrane-associ 100.0 7.8E-41 2.7E-45 301.5 6.2 123 5-127 4-130 (134)
2 2crr_A Stromal membrane-associ 100.0 1.3E-40 4.3E-45 302.4 6.5 122 7-128 8-133 (141)
3 2olm_A Nucleoporin-like protei 100.0 3.9E-39 1.3E-43 292.3 9.2 121 6-127 3-130 (140)
4 3jue_A Arfgap with coiled-coil 100.0 1.3E-35 4.6E-40 299.5 7.3 121 7-127 23-152 (368)
5 3lju_X ARF-GAP with dual PH do 100.0 6.1E-35 2.1E-39 298.3 9.5 120 7-127 13-139 (386)
6 2owa_A Arfgap-like finger doma 100.0 1.7E-34 5.9E-39 261.6 6.5 108 14-121 22-132 (138)
7 2crw_A ARF GAP 3, ADP-ribosyla 100.0 7.1E-34 2.4E-38 260.5 5.7 91 13-103 14-105 (149)
8 3dwd_A ADP-ribosylation factor 100.0 3.9E-33 1.3E-37 255.1 8.1 113 12-124 22-145 (147)
9 2p57_A GTPase-activating prote 100.0 1.1E-31 3.9E-36 244.8 6.9 106 14-119 23-130 (144)
10 3sub_A ADP-ribosylation factor 100.0 1E-31 3.4E-36 249.2 6.2 110 11-120 4-115 (163)
11 2b0o_E UPLC1; arfgap, structur 100.0 5.2E-31 1.8E-35 255.8 9.2 119 7-125 21-147 (301)
12 3lvq_E ARF-GAP with SH3 domain 100.0 2E-31 6.9E-36 273.6 6.2 119 8-126 3-129 (497)
13 1dcq_A PYK2-associated protein 100.0 1.2E-30 4.1E-35 250.2 7.6 114 13-126 2-123 (278)
14 3o47_A ADP-ribosylation factor 99.9 1.2E-28 4E-33 244.1 7.0 91 11-101 20-110 (329)
15 1u5k_A Hypothetical protein; O 84.7 0.5 1.7E-05 44.8 3.0 84 18-118 136-223 (244)
16 1gnf_A Transcription factor GA 63.1 1.9 6.6E-05 32.4 0.6 38 26-63 2-40 (46)
17 3dfx_A Trans-acting T-cell-spe 57.4 3.2 0.00011 33.2 1.0 39 25-63 4-43 (63)
18 2vut_I AREA, nitrogen regulato 52.8 3.8 0.00013 30.4 0.7 35 29-63 2-37 (43)
19 4gat_A Nitrogen regulatory pro 51.2 4.3 0.00015 32.6 0.8 38 26-63 7-45 (66)
20 4hc9_A Trans-acting T-cell-spe 47.9 4.5 0.00016 35.4 0.5 36 28-63 5-41 (115)
21 1tjl_A DNAK suppressor protein 46.6 5.3 0.00018 36.4 0.7 35 25-59 108-143 (151)
22 2kae_A GATA-type transcription 37.2 5.4 0.00018 32.5 -0.7 36 27-63 7-45 (71)
23 2kgo_A Uncharacterized protein 30.9 5.5 0.00019 34.9 -1.7 32 28-59 56-88 (108)
24 1d4u_A Nucleotide excision rep 29.8 5.1 0.00017 35.2 -2.2 31 27-57 4-35 (111)
25 3iz6_N 40S ribosomal protein S 28.1 31 0.0011 27.0 2.2 39 26-69 16-54 (56)
26 1ffk_W Ribosomal protein L37AE 26.9 13 0.00043 30.6 -0.1 41 14-56 12-53 (73)
27 3dzy_D Peroxisome proliferator 22.3 23 0.00079 36.4 0.7 31 26-59 48-78 (419)
28 3g9m_A Glucocorticoid receptor 21.1 17 0.00058 30.2 -0.5 30 27-59 1-30 (90)
29 4hc9_A Trans-acting T-cell-spe 21.0 31 0.001 30.1 1.1 39 26-64 57-96 (115)
No 1
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=100.00 E-value=7.8e-41 Score=301.53 Aligned_cols=123 Identities=49% Similarity=0.889 Sum_probs=107.9
Q ss_pred ccccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHH
Q 010188 5 ANVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFI 84 (516)
Q Consensus 5 a~~Sk~~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~L 84 (516)
+..+++..++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|++|
T Consensus 4 ~~~~~~~~e~~~~~l~~L~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hiS~VkSl~ld~w~~~~l~~m 83 (134)
T 2iqj_A 4 TGKSVKDVDRYQAVLANLLLEEDNKFCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTQEQIQCM 83 (134)
T ss_dssp ---------CCHHHHHHHTTSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHH
T ss_pred ccccHhHHHHHHHHHHHHHcCcCCCcCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCCCceeeccccCCCHHHHHHH
Confidence 34677778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHhhcCCCCC----ChhHHHHHHHHHHhhcccccCCC
Q 010188 85 QSMGNEKANSYWEAELPPNY----DRVGIENFIRAKYEEKRWVSRDG 127 (516)
Q Consensus 85 q~~GN~~aN~iwEa~lPps~----d~~~re~FIraKY~eKrFv~k~g 127 (516)
+.+||.++|.|||+++|+.+ ....+|+|||+||++|+|+.+..
T Consensus 84 ~~~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~ 130 (134)
T 2iqj_A 84 QEMGNGKANRLYEAYLPETFRRPQIDPAVEGFIRDKYEKKKYMDRSL 130 (134)
T ss_dssp HTCHHHHHHHHHTTTCCSSCCCCCSHHHHHHHHHHHHTSCTTCCTTC
T ss_pred HHHchHHHHHHHHhcCCccCCCCCchHHHHHHHHHHHhCCeeeCCcc
Confidence 99999999999999998653 23578999999999999998654
No 2
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=302.40 Aligned_cols=122 Identities=51% Similarity=0.975 Sum_probs=112.7
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHh
Q 010188 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (516)
Q Consensus 7 ~Sk~~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~ 86 (516)
..++++++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|++|+.
T Consensus 8 ~~~~~~e~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VkSl~ld~w~~~~l~~m~~ 87 (141)
T 2crr_A 8 KAQKLNEQHQLILSKLLREEDNKYCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHISRVKSVNLDQWTAEQIQCMQD 87 (141)
T ss_dssp CTTTTTTCHHHHHHHHHHSGGGSSCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTTCCCBCSSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccCCcCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCCCeeeECCCCCCCHHHHHHHHH
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHhhcCCCCC----ChhHHHHHHHHHHhhcccccCCCC
Q 010188 87 MGNEKANSYWEAELPPNY----DRVGIENFIRAKYEEKRWVSRDGQ 128 (516)
Q Consensus 87 ~GN~~aN~iwEa~lPps~----d~~~re~FIraKY~eKrFv~k~g~ 128 (516)
+||.++|.|||+++|+.+ ....+|+|||+||++|+|+.+...
T Consensus 88 ~GN~~an~~~e~~lp~~~~~P~~~~~~e~fIr~KY~~k~f~~~~~~ 133 (141)
T 2crr_A 88 MGNTKARLLYEANLPENFRRPQTDQAVEFFIRDKYEKKKYYDKNAI 133 (141)
T ss_dssp THHHHHHHHGGGSCCTTCCCCCSHHHHHHHHHHHHTSCTTCCCGGG
T ss_pred HccHHHHHHHHhcCCcccCCCCchHHHHHHHHHHHhcCcccCCCcc
Confidence 999999999999998653 235689999999999999976543
No 3
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=100.00 E-value=3.9e-39 Score=292.34 Aligned_cols=121 Identities=31% Similarity=0.687 Sum_probs=110.3
Q ss_pred cccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHH
Q 010188 6 NVSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 85 (516)
Q Consensus 6 ~~Sk~~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq 85 (516)
..+++.+++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+| |+||||+||.|++++|++|+
T Consensus 3 ~~~~~~~e~~~~~l~~l~~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~-s~VrSl~ld~w~~~~l~~m~ 81 (140)
T 2olm_A 3 SAKRKQEEKHLKMLRDMTGLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP-HRVKSISMTTFTQQEIEFLQ 81 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHTSGGGGSCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC-CCEEETTTCCCCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhcCcCCCcCCCCCCCCCCceeeccCEEEchhccchhccCCCc-ceeeecCCCCCCHHHHHHHH
Confidence 34567788999999999999999999999999999999999999999999999999996 99999999999999999999
Q ss_pred hhChHHHHHHHhhcCCC-------CCChhHHHHHHHHHHhhcccccCCC
Q 010188 86 SMGNEKANSYWEAELPP-------NYDRVGIENFIRAKYEEKRWVSRDG 127 (516)
Q Consensus 86 ~~GN~~aN~iwEa~lPp-------s~d~~~re~FIraKY~eKrFv~k~g 127 (516)
.+||.++|.|||+++++ ..|...+++|||+||++|+|+.+..
T Consensus 82 ~~GN~~an~~~e~~~~~~~~~~P~~~d~~~~~~fIr~KYe~k~f~~~~~ 130 (140)
T 2olm_A 82 KHGNEVCKQIWLGLFDDRSSAIPDFRDPQKVKEFLQEKYEKKRWYVPPE 130 (140)
T ss_dssp HCHHHHHHHHHTTTCCTTTSCCCCTTCHHHHHHHHHHHHTSCTTCCCHH
T ss_pred HhccHHHHHHHHhhCCcccCCCCCCCCHHHHHHHHHHHHcCCeeeCCcc
Confidence 99999999999998753 2244578999999999999997643
No 4
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=100.00 E-value=1.3e-35 Score=299.46 Aligned_cols=121 Identities=40% Similarity=0.754 Sum_probs=106.2
Q ss_pred ccHHH-HHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHH
Q 010188 7 VSKEL-NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQ 85 (516)
Q Consensus 7 ~Sk~~-~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq 85 (516)
++++. +++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|++|+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~s~v~s~~~d~w~~~~~~~~~ 102 (368)
T 3jue_A 23 MARGREPGGVGHVVAQVQSVDGNAQCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHFSKVRSLTLDSWEPELVKLMC 102 (368)
T ss_dssp ---------CCCHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHH
T ss_pred ccchhhhhHHHHHHHHHHcCCCcCcCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCcCeeEEeecccccHHHHHHHH
Confidence 44443 44488999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHHhhcCCCC--------CChhHHHHHHHHHHhhcccccCCC
Q 010188 86 SMGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRDG 127 (516)
Q Consensus 86 ~~GN~~aN~iwEa~lPps--------~d~~~re~FIraKY~eKrFv~k~g 127 (516)
.+||.++|.|||+++++. .++..+++|||+||++|+|+.+..
T Consensus 103 ~~gn~~~n~~~e~~~~~~~~~kp~~~~~~~~re~fIr~KY~~k~f~~~l~ 152 (368)
T 3jue_A 103 ELGNVIINQIYEARVEAMAVKKPGPSCSRQEKEAWIHAKYVEKKFLTKLP 152 (368)
T ss_dssp HSCHHHHHHHHTTTTTTTTCCCCCTTSCHHHHHHHHHHHHTSCTTCCSCC
T ss_pred HHccHHHHHHHHhhcccccCcCCCCCCCHHHHHHHHHHHHHhhcccccch
Confidence 999999999999998642 234679999999999999998754
No 5
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=100.00 E-value=6.1e-35 Score=298.28 Aligned_cols=120 Identities=42% Similarity=0.777 Sum_probs=111.9
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHh
Q 010188 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (516)
Q Consensus 7 ~Sk~~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~ 86 (516)
-+++++++++++|+.|++.|+|+.|||||+++|+|||+|||||||++|+||||+| +|||+||||+||.|++++|++|+.
T Consensus 13 ~~~~q~~~~~~~l~~l~~~~~N~~C~dC~~~~p~w~s~~~g~~~C~~Csg~hr~l-~his~v~s~~ld~w~~~~~~~~~~ 91 (386)
T 3lju_X 13 NLYFQGKERRRAVLELLQRPGNARCADCGAPDPDWASYTLGVFICLSCSGIHRNI-PQVSKVKSVRLDAWEEAQVEFMAS 91 (386)
T ss_dssp SHHHHHHHHHHHHHHHTTSGGGSBCTTTCCBSCCEEETTTTEEECHHHHHHHHTC-TTTCCEEETTTSCCCHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhcCcCCCcCccCCCCCCCeEEecccEEEhhhhchHhhCC-CccceeeeecccCCCHHHHHHHHH
Confidence 4688999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hChHHHHHHHhhcCCCCC------C-hhHHHHHHHHHHhhcccccCCC
Q 010188 87 MGNEKANSYWEAELPPNY------D-RVGIENFIRAKYEEKRWVSRDG 127 (516)
Q Consensus 87 ~GN~~aN~iwEa~lPps~------d-~~~re~FIraKY~eKrFv~k~g 127 (516)
+||.++|.|||+++|+.. | ...+|+|||+||++++|+....
T Consensus 92 ~gN~~~~~~~e~~~~~~~~~p~~~~~~~~~e~fIr~KY~~~~f~~~~~ 139 (386)
T 3lju_X 92 HGNDAARARFESKVPSFYYRPTPSDCQLLREQWIRAKYERQEFIYPEK 139 (386)
T ss_dssp SSHHHHHHHHTTTCCTTSCCCCTTSCHHHHHHHHHHHHTSCTTTSGGG
T ss_pred hcchHHHHHHhccCCccCCCCCCccchHHHHHEHHhhhCCCEEECCcc
Confidence 999999999999987532 2 3468999999999999998765
No 6
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.7e-34 Score=261.59 Aligned_cols=108 Identities=32% Similarity=0.628 Sum_probs=98.3
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhhChHHHH
Q 010188 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKAN 93 (516)
Q Consensus 14 r~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~GN~~aN 93 (516)
..+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||+||+|||+||||+||+|++++|++|+.+||.++|
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~lD~w~~~~l~~m~~~GN~~an 101 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHISFVRSSDLDKFTPIQLVRMDIGGNGRAR 101 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTTCCEEETTTSCCCHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCCCeeeecCcCcCCHHHHHHHHhhccHHHH
Confidence 35778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCC--C-CChhHHHHHHHHHHhhcc
Q 010188 94 SYWEAELPP--N-YDRVGIENFIRAKYEEKR 121 (516)
Q Consensus 94 ~iwEa~lPp--s-~d~~~re~FIraKY~eKr 121 (516)
+|||++... . ..+.+.+.||.+||+++.
T Consensus 102 ~~~e~~~~~~~~~~~~~kY~s~~a~~Y~~kL 132 (138)
T 2owa_A 102 NYFKQVLGVNFSPKTKEYASSICGRQYKQIL 132 (138)
T ss_dssp HHHHHHTCTTCCGGGCHHHHSHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHhhHHHHHHHHHH
Confidence 999985432 2 235678899999999873
No 7
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.98 E-value=7.1e-34 Score=260.51 Aligned_cols=91 Identities=42% Similarity=0.773 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCC-CCHHHHHHHHhhChHH
Q 010188 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNEK 91 (516)
Q Consensus 13 ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDs-Wt~eeV~~Lq~~GN~~ 91 (516)
++.+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+||||.||+|||+||||+||. |++++|+.|+.+||.+
T Consensus 14 ~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hiS~VrSl~LD~~W~~~~l~~m~~~GN~~ 93 (149)
T 2crw_A 14 QDILTIFKRLRSVPTNKVCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHLSFIRSTELDSNWSWFQLRCMQVGGNAS 93 (149)
T ss_dssp HHHHHHHHHHHHSTTTSBCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTTCCEECSSSCCCCCHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhcCcCCCcCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCCCeeeccccCCCCCHHHHHHHHHHhhHH
Confidence 467899999999999999999999999999999999999999999999999999999999996 9999999999999999
Q ss_pred HHHHHhhcCCCC
Q 010188 92 ANSYWEAELPPN 103 (516)
Q Consensus 92 aN~iwEa~lPps 103 (516)
+|.|||+++...
T Consensus 94 an~~~e~~~~~~ 105 (149)
T 2crw_A 94 ASSFFHQHGCST 105 (149)
T ss_dssp HHHHHHHHCCCC
T ss_pred HHHHHHhcCCCC
Confidence 999999998764
No 8
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=99.98 E-value=3.9e-33 Score=255.06 Aligned_cols=113 Identities=36% Similarity=0.676 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhhChHH
Q 010188 12 NARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEK 91 (516)
Q Consensus 12 ~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~GN~~ 91 (516)
+++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|+.|+.+||.+
T Consensus 22 ~~~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hISkVkSl~LD~W~~~el~~m~~~GN~~ 101 (147)
T 3dwd_A 22 SPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNAK 101 (147)
T ss_dssp CHHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEESCC--CCHHHHHHHHHCCHHH
T ss_pred CHHHHHHHHHHHcCcCCCccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCCCccccccccCCCHHHHHHHHHHhhHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCC--CCCCh---------hHHHHHHHHHHhhccccc
Q 010188 92 ANSYWEAELP--PNYDR---------VGIENFIRAKYEEKRWVS 124 (516)
Q Consensus 92 aN~iwEa~lP--ps~d~---------~~re~FIraKY~eKrFv~ 124 (516)
+|+|||++.. +..+. ...++-|+++++.|.|..
T Consensus 102 an~~~ea~~~~~~~~~~~~KY~s~aA~~Yr~~l~~~~eg~~w~~ 145 (147)
T 3dwd_A 102 FREFLESQEDYDPCWSLQEKYNSRAAALFRDKVVALAEGREWSL 145 (147)
T ss_dssp HHHHHHTSTTCCTTCCHHHHHTSHHHHHHHHHHHHHHC------
T ss_pred HHHHHHhCCCCCCCCCHHHhhCCHHHHHHHHHHHHHHcCCcCCC
Confidence 9999998742 22221 125677777777777764
No 9
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=244.79 Aligned_cols=106 Identities=37% Similarity=0.715 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCC-CCHHHHHHHHhhChHHH
Q 010188 14 RHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDT-WLPEQVAFIQSMGNEKA 92 (516)
Q Consensus 14 r~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDs-Wt~eeV~~Lq~~GN~~a 92 (516)
+.+++|+.|++.|+|+.|+|||+++|+|+|+|||||||+.|+||||+||+|||+||||+||. |++++|++|+.+||.++
T Consensus 23 ~~~~~l~~L~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hIS~VrSl~LD~~W~~~~l~~m~~~GN~~a 102 (144)
T 2p57_A 23 EIQTLFKRLRAVPTNKACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHLSFIRSTELDSNWNWFQLRCMQVGGNANA 102 (144)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCCHHHHHHHHHCCHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCCCeeeecccCCCCCHHHHHHHHHhCHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999996 99999999999999999
Q ss_pred HHHHhhcCCCCCC-hhHHHHHHHHHHhh
Q 010188 93 NSYWEAELPPNYD-RVGIENFIRAKYEE 119 (516)
Q Consensus 93 N~iwEa~lPps~d-~~~re~FIraKY~e 119 (516)
|.|||++.-...+ +.+.......+|++
T Consensus 103 n~~~e~~g~~~~~~~~KY~s~aA~~Yr~ 130 (144)
T 2p57_A 103 TAFFRQHGCTANDANTKYNSRAAQMYRE 130 (144)
T ss_dssp HHHHHHTTCCCCSHHHHHTSHHHHHHHH
T ss_pred HHHHHHcCCCCCchhhccCcHHHHHHHH
Confidence 9999988543322 12233334444444
No 10
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=99.97 E-value=1e-31 Score=249.16 Aligned_cols=110 Identities=38% Similarity=0.667 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHhcC-CCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhhCh
Q 010188 11 LNARHRKILEGLLKL-PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGN 89 (516)
Q Consensus 11 ~~ar~~kiL~~Llk~-PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~GN 89 (516)
+++..+++|+.|++. |+|+.|+|||+++|+|||++||||||++|+||||.||+|||+||||+||.|++++|++|+.+||
T Consensus 4 m~a~a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hISkVKSltLD~Wt~e~l~~m~~~GN 83 (163)
T 3sub_A 4 MNAAAVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHISIVRSIKMDIFTDEQLKYIDKGGN 83 (163)
T ss_dssp HHHHHHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTTCCEEETTTCCCCHHHHHHHHHCCH
T ss_pred ccHHHHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCCCeeeeccccCcCHHHHHHHHhhCH
Confidence 577889999999975 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCh-hHHHHHHHHHHhhc
Q 010188 90 EKANSYWEAELPPNYDR-VGIENFIRAKYEEK 120 (516)
Q Consensus 90 ~~aN~iwEa~lPps~d~-~~re~FIraKY~eK 120 (516)
.++|.|||.+....... .....-...+|+++
T Consensus 84 ~~an~~~e~~g~~~~~p~~KY~s~aA~~Yr~~ 115 (163)
T 3sub_A 84 KKCQTYLENYGISDFIPERKYRTKAADHYRKI 115 (163)
T ss_dssp HHHHHHHHHTTCTTSCHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccChhhcCCCHHHHHHHHH
Confidence 99999999987655432 12223344556555
No 11
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.97 E-value=5.2e-31 Score=255.81 Aligned_cols=119 Identities=38% Similarity=0.678 Sum_probs=105.8
Q ss_pred ccHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHh
Q 010188 7 VSKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQS 86 (516)
Q Consensus 7 ~Sk~~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~ 86 (516)
.+.+.+++.+++|+.|++.|+|+.|+|||+++|+|+|+|||||||++|+|+||.||+|||+|||++||.|+.++|.+|..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~cs~~hr~lg~~is~v~sl~lD~w~~~~l~~~~~ 100 (301)
T 2b0o_E 21 HDGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALN 100 (301)
T ss_dssp ------CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCcCCCCCCCCCCeEEeecCeEEcHHHHHHHHhhCCCcccccccCcCCCCHHHHHHHHH
Confidence 34455677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHhhcCCCC--------CChhHHHHHHHHHHhhcccccC
Q 010188 87 MGNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSR 125 (516)
Q Consensus 87 ~GN~~aN~iwEa~lPps--------~d~~~re~FIraKY~eKrFv~k 125 (516)
+||.++|.+||+.++.. .+...+++||++||++++|..+
T Consensus 101 ~GN~~~n~i~E~~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~ 147 (301)
T 2b0o_E 101 MGNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARR 147 (301)
T ss_dssp CCHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCC
T ss_pred cCCHHHHHHHHHhhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcc
Confidence 99999999999987642 2456799999999999999764
No 12
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.97 E-value=2e-31 Score=273.62 Aligned_cols=119 Identities=38% Similarity=0.675 Sum_probs=107.2
Q ss_pred cHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhh
Q 010188 8 SKELNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSM 87 (516)
Q Consensus 8 Sk~~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~ 87 (516)
+..+++.++++|+.|++.|+|+.|+|||+++|+|+|+|+|||||++||||||+||+|||+||||+||.|+.+++.+|+.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~~~~~c~~c~~~hr~lg~~~s~vrsl~ld~w~~~~~~l~~~~ 82 (497)
T 3lvq_E 3 DGEPHDLTKLLIAEVKSRPGNSQCCDCGAADPTWLSTNLGVLTCIQCSGVHRELGVRFSRMQSLTLDLLGPSELLLALNM 82 (497)
T ss_dssp -----CHHHHHHHHHHTSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGTTTTTC
T ss_pred cchhHHHHHHHHHHHhcCCCCCcccCCCCCCCCEEEechhHHhHHhhHHHHHhhccccceecccccCCCCHHHHHHHHHH
Confidence 34567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhhcCCCC--------CChhHHHHHHHHHHhhcccccCC
Q 010188 88 GNEKANSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 126 (516)
Q Consensus 88 GN~~aN~iwEa~lPps--------~d~~~re~FIraKY~eKrFv~k~ 126 (516)
||..+|.+||+.+|.. .+...+++||++||++++|..+.
T Consensus 83 GN~~an~i~E~~lp~~~~~kP~~~s~~~~re~fIraky~~~~f~~~~ 129 (497)
T 3lvq_E 83 GNTSFNEVMEAQLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRC 129 (497)
T ss_dssp CHHHHHHHHTTTCCSSSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred hhHHHHHHHHhhcccccCCCCCCcCcHHHHHHHHHHHhhcccccccc
Confidence 9999999999998632 24567999999999999998764
No 13
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.96 E-value=1.2e-30 Score=250.19 Aligned_cols=114 Identities=37% Similarity=0.723 Sum_probs=105.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhhChHHH
Q 010188 13 ARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKA 92 (516)
Q Consensus 13 ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~GN~~a 92 (516)
++++++|+.|++.|+|+.|+|||+.+|.|+|++||+|||++|+||||+||+|||+||||+||.|+.+++.+|..+||..+
T Consensus 2 ~~~~~~~~~~~~~~~n~~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~is~v~s~~~d~~~~~~l~~~~~~GN~~~ 81 (278)
T 1dcq_A 2 ELTKEIISEVQRMTGNDVCCDCGAPDPTWLSTNLGILTCIECSGIHRELGVHYSRMQSLTLDVLGTSELLLAKNIGNAGF 81 (278)
T ss_dssp -CHHHHHHHHHHSTTTTBCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTTCCEEETTTSCCCGGGGHHHHHSCHHHH
T ss_pred chHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCeEEcHHHHHHHhhcCCCcceeeeeecCCCCHHHHHHHHHcCcHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCC--------CChhHHHHHHHHHHhhcccccCC
Q 010188 93 NSYWEAELPPN--------YDRVGIENFIRAKYEEKRWVSRD 126 (516)
Q Consensus 93 N~iwEa~lPps--------~d~~~re~FIraKY~eKrFv~k~ 126 (516)
|+|||+.+|.. .+...+++||++||+.++|..+.
T Consensus 82 n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~ 123 (278)
T 1dcq_A 82 NEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKK 123 (278)
T ss_dssp HHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCC
T ss_pred HHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhccccc
Confidence 99999987632 34567899999999999998753
No 14
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=1.2e-28 Score=244.08 Aligned_cols=91 Identities=41% Similarity=0.760 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhhChH
Q 010188 11 LNARHRKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNE 90 (516)
Q Consensus 11 ~~ar~~kiL~~Llk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~GN~ 90 (516)
.+++++++|+.|++.|+|+.|+|||+++|+|||+|||||||++|+||||+||+|||+||||+||.|++++|++|+.+||.
T Consensus 20 ~~~~~~~~~~~~~~~~~n~~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s~v~s~~~~~~~~~~~~~~~~~gN~ 99 (329)
T 3o47_A 20 ASPRTRKVLKEVRVQDENNVCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLSFVRSVTMDKWKDIELEKMKAGGNA 99 (329)
T ss_dssp ---CHHHHHHHHHHSTTTTBCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTCCEEESSSCCCCHHHHHHHHHCCHH
T ss_pred CCHHHHHHHHHHHcCCCCCcCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcCEEeeccccCCCHHHHHHHHHhCcH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 010188 91 KANSYWEAELP 101 (516)
Q Consensus 91 ~aN~iwEa~lP 101 (516)
++|+|||++..
T Consensus 100 ~~n~~~e~~~~ 110 (329)
T 3o47_A 100 KFREFLESQED 110 (329)
T ss_dssp HHHHHHHTCSS
T ss_pred HHHHHHHhcCC
Confidence 99999998753
No 15
>1u5k_A Hypothetical protein; OBD-fold, Zn-binding, recombination,replication; 2.00A {Deinococcus radiodurans} SCOP: b.40.4.13 g.45.1.2 PDB: 1w3s_A 2v1c_C
Probab=84.68 E-value=0.5 Score=44.81 Aligned_cols=84 Identities=20% Similarity=0.447 Sum_probs=52.6
Q ss_pred HHHHHhc----CCCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCccccccccccCCCCHHHHHHHHhhChHHHH
Q 010188 18 ILEGLLK----LPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKAN 93 (516)
Q Consensus 18 iL~~Llk----~PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVKSLtLDsWt~eeV~~Lq~~GN~~aN 93 (516)
.+-.|+. .|.-..|+.||..+..|.+...|.++|..|...+ .++.+++..|+.+-+....
T Consensus 136 Fel~lL~~~G~~p~l~~C~~cg~~~~~~fs~~~Gg~~c~~~~~~~----------------~l~~~~l~~l~~l~~~~~~ 199 (244)
T 1u5k_A 136 MSYKLLGLAGVIPQTARCARCGAPDPEHPDPLGGQLLCSKCAALP----------------PYPPAVLDFLRHAVRRTVR 199 (244)
T ss_dssp HHHHHHTTSSSCCCCSBCTTTCCBSCCEECTTTSSEECTTTCSSC----------------CCCHHHHHHHHHTTTSCHH
T ss_pred HHHHHHHHCCCCCCcCccccCCCCCCCcEecccCEEECcccCCCC----------------CCCHHHHHHHHHHHhCCHH
Confidence 3444554 3566899999998777889999999999985321 3567888888776554444
Q ss_pred HHHhhcCCCCCChhHHHHHHHHHHh
Q 010188 94 SYWEAELPPNYDRVGIENFIRAKYE 118 (516)
Q Consensus 94 ~iwEa~lPps~d~~~re~FIraKY~ 118 (516)
.+..-.+++. .....+++++.-|.
T Consensus 200 ~~~~~~~~~~-~~~~~~~ll~~~~~ 223 (244)
T 1u5k_A 200 ASFEQPVPSA-DRPALWRALEKFVT 223 (244)
T ss_dssp HHHHSCCCGG-GHHHHHHHHHHHHH
T ss_pred HHhhCCCCHH-HHHHHHHHHHHHHH
Confidence 4333333221 23344555555443
No 16
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=63.06 E-value=1.9 Score=32.43 Aligned_cols=38 Identities=34% Similarity=0.790 Sum_probs=32.0
Q ss_pred CCCCCCcCCCCC-CCCceecchhHHHHHHhhhhhhcCCC
Q 010188 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (516)
Q Consensus 26 PgNk~CADCGA~-~P~WASvn~GVFLC~~CSgIHRsLG~ 63 (516)
...+.|.+|+.. -|.|=.-..|..||-.|.-.++..|+
T Consensus 2 ~~~~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 40 (46)
T 1gnf_A 2 SEARECVNCGATATPLWRRDRTGHYLCNACGLYHKMNGQ 40 (46)
T ss_dssp CCSCCCTTTCCCCCSSCBCCTTCCCBCSHHHHHHHHTCS
T ss_pred CCCCCCCCcCCCCCCcCccCCCCCccchHHHHHHHHcCC
Confidence 356889999986 67899988999999999988887664
No 17
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=57.44 E-value=3.2 Score=33.15 Aligned_cols=39 Identities=18% Similarity=0.427 Sum_probs=32.8
Q ss_pred CCCCCCCcCCCCC-CCCceecchhHHHHHHhhhhhhcCCC
Q 010188 25 LPENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (516)
Q Consensus 25 ~PgNk~CADCGA~-~P~WASvn~GVFLC~~CSgIHRsLG~ 63 (516)
......|.+|+.. -|.|=.-..|-.||-.|.-..+..|.
T Consensus 4 ~~~~~~C~~C~tt~Tp~WR~gp~G~~LCNACGl~~~~~~~ 43 (63)
T 3dfx_A 4 RRAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNI 43 (63)
T ss_dssp CCTTCCCTTTCCSCCSSCCCCTTSCCCCHHHHHHHHHHSS
T ss_pred CCCCCcCCCcCCCCCCccCCCCCCCchhhHHHHHHHHcCC
Confidence 3567899999986 67999999999999999888877664
No 18
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=52.76 E-value=3.8 Score=30.36 Aligned_cols=35 Identities=26% Similarity=0.612 Sum_probs=29.3
Q ss_pred CCCcCCCCC-CCCceecchhHHHHHHhhhhhhcCCC
Q 010188 29 RECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (516)
Q Consensus 29 k~CADCGA~-~P~WASvn~GVFLC~~CSgIHRsLG~ 63 (516)
+.|.+|+.. -|.|=.-..|-.||-.|.-..|.-|+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~~LCNaCGl~~k~~~~ 37 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 37 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSCEECHHHHHHHHHHSS
T ss_pred CcCCccCCCCCCccccCCCCCcccHHHHHHHHHhCC
Confidence 479999986 67999999999999999887776553
No 19
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=51.20 E-value=4.3 Score=32.63 Aligned_cols=38 Identities=24% Similarity=0.541 Sum_probs=32.1
Q ss_pred CCCCCCcCCCCC-CCCceecchhHHHHHHhhhhhhcCCC
Q 010188 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (516)
Q Consensus 26 PgNk~CADCGA~-~P~WASvn~GVFLC~~CSgIHRsLG~ 63 (516)
.....|++|+.. -|.|-.-..|-.||-.|.-..+..|.
T Consensus 7 ~~~~~C~~C~t~~Tp~WR~gp~G~~LCNaCGl~~~~~~~ 45 (66)
T 4gat_A 7 NGPTTCTNCFTQTTPLWRRNPEGQPLCNACGLFLKLHGV 45 (66)
T ss_dssp SSSCCCTTTCCCCCSSCEEETTTEEECHHHHHHHHHHCS
T ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCccHHHHHHHHHcCC
Confidence 456899999975 78999999999999999888777664
No 20
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=47.90 E-value=4.5 Score=35.41 Aligned_cols=36 Identities=33% Similarity=0.804 Sum_probs=29.7
Q ss_pred CCCCcCCCCC-CCCceecchhHHHHHHhhhhhhcCCC
Q 010188 28 NRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGV 63 (516)
Q Consensus 28 Nk~CADCGA~-~P~WASvn~GVFLC~~CSgIHRsLG~ 63 (516)
-+.|++||+. -|.|=.-..|-+||-.|.-.++..|.
T Consensus 5 ~~~C~~Cg~~~Tp~WRr~~~g~~lCnaCgl~~Kl~G~ 41 (115)
T 4hc9_A 5 GRECVNCGATSTPLWRRDGTGHYLCNACGLYHKMNGQ 41 (115)
T ss_dssp -CCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSS
T ss_pred CCCCCCCCCccCCcceECCCCCCcCcchhhhhhhccc
Confidence 4789999975 78999889999999999887775554
No 21
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA polymerase, stringent response, PPGPP, riken structural genomics/proteomics initiative; 2.00A {Escherichia coli} SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Probab=46.64 E-value=5.3 Score=36.43 Aligned_cols=35 Identities=11% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCCCCCCcCCCCCCCC-ceecchhHHHHHHhhhhhh
Q 010188 25 LPENRECADCKAKGPR-WASVNLGIFICMQCSGIHR 59 (516)
Q Consensus 25 ~PgNk~CADCGA~~P~-WASvn~GVFLC~~CSgIHR 59 (516)
...--+|.+||.+=|. -.-.-=++-+|+.|...|-
T Consensus 108 ~g~yg~C~~Cg~~Ip~~Rl~a~P~a~~Ci~Cq~~~E 143 (151)
T 1tjl_A 108 DEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAE 143 (151)
T ss_dssp TTCCSBCSSSSCBCCHHHHHHCTTCCSCHHHHHHHH
T ss_pred CCCCceeCCCCCcchHHHHhcCCCcchhHHHHHHHH
Confidence 3456799999987321 1122235667999998764
No 22
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=37.21 E-value=5.4 Score=32.54 Aligned_cols=36 Identities=22% Similarity=0.581 Sum_probs=29.0
Q ss_pred CCCCCcCCCCC-CCCcee--cchhHHHHHHhhhhhhcCCC
Q 010188 27 ENRECADCKAK-GPRWAS--VNLGIFICMQCSGIHRSLGV 63 (516)
Q Consensus 27 gNk~CADCGA~-~P~WAS--vn~GVFLC~~CSgIHRsLG~ 63 (516)
....|.+|+.. -|.|=. -.-| .||-.|.-.+|..+.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g-~LCNACGl~~~~~~~ 45 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEG-IQCNACFIYQRKYNK 45 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSC-CCSSHHHHHHHHHHS
T ss_pred CCCcCCccCCCCCCccccCCCCCC-ccchHHHHHHHHhCC
Confidence 45789999985 789988 6778 899999888887664
No 23
>2kgo_A Uncharacterized protein YBII; Zn finger, partially disordered, structural proteomics, META binding, zinc-finger, structural genomics; NMR {Escherichia coli}
Probab=30.94 E-value=5.5 Score=34.88 Aligned_cols=32 Identities=25% Similarity=0.573 Sum_probs=21.3
Q ss_pred CCCCcCCCCCCC-CceecchhHHHHHHhhhhhh
Q 010188 28 NRECADCKAKGP-RWASVNLGIFICMQCSGIHR 59 (516)
Q Consensus 28 Nk~CADCGA~~P-~WASvn~GVFLC~~CSgIHR 59 (516)
--+|.+||.+=| .-.-.-=++.+|+.|...+-
T Consensus 56 yG~C~~CGe~Ip~~RL~A~P~a~~Cv~Cq~~~E 88 (108)
T 2kgo_A 56 LDECEECGAPIPQARREAIPGVRLCIHCQQEKD 88 (108)
T ss_dssp CSBCTTTCCBCCHHHHHHSTTCCSCHHHHHHHH
T ss_pred CceecccCCcccHHHHhcCCCccccHHHHHHHH
Confidence 579999998732 11222335667999998764
No 24
>1d4u_A Nucleotide excision repair protein XPA (XPA-MBD); DNA repair, loop-rich domain, relaxation, DNA binding protein; NMR {Homo sapiens} SCOP: a.6.1.2 g.39.1.5 PDB: 1xpa_A
Probab=29.78 E-value=5.1 Score=35.21 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=23.9
Q ss_pred CCCCCcCCCCCCCCce-ecchhHHHHHHhhhh
Q 010188 27 ENRECADCKAKGPRWA-SVNLGIFICMQCSGI 57 (516)
Q Consensus 27 gNk~CADCGA~~P~WA-Svn~GVFLC~~CSgI 57 (516)
+...|.+||...-.|. .-+|++-||..|...
T Consensus 4 ~~~~C~eC~~~~~d~~l~~~F~~~VC~~Cr~~ 35 (111)
T 1d4u_A 4 DYVICEECGKEFMDSYLMDHFDLPTCDDCRDA 35 (111)
T ss_dssp CCEECTTTCCEESCSSSTTTTSCCCCTTTCSS
T ss_pred CCCccccCCChhhHHHHHHhCCeeechhhccc
Confidence 4567999998744443 459999999999864
No 25
>3iz6_N 40S ribosomal protein S29 (S14P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_n
Probab=28.06 E-value=31 Score=26.97 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=28.9
Q ss_pred CCCCCCcCCCCCCCCceecchhHHHHHHhhhhhhcCCCcccccc
Q 010188 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVR 69 (516)
Q Consensus 26 PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHRsLG~hISkVK 69 (516)
+|-+.|.-||.+. =+-=.||..+|-.|- |++...|-+||
T Consensus 16 ~g~~rC~vcGr~~--g~iRkfGL~~cR~cf---Re~A~~iGF~k 54 (56)
T 3iz6_N 16 AGSRVCRVCGNSH--GLIRKYGLMCCRQCF---RSDAKDIGFIK 54 (56)
T ss_dssp CCCCCCSSCCCSC--CCTTTTSCTTHHHHH---HTTCCSTTCCS
T ss_pred CCcceeecCCCCc--ccccccCCcHHHHHH---HHHHHhcCcee
Confidence 5679999999764 344489999999996 66666666655
No 26
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=26.90 E-value=13 Score=30.56 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=31.8
Q ss_pred HHHHHHHHH-hcCCCCCCCcCCCCCCCCceecchhHHHHHHhhh
Q 010188 14 RHRKILEGL-LKLPENRECADCKAKGPRWASVNLGIFICMQCSG 56 (516)
Q Consensus 14 r~~kiL~~L-lk~PgNk~CADCGA~~P~WASvn~GVFLC~~CSg 56 (516)
..|+.+.++ ........|.-||.....+.. .||+.|..|.-
T Consensus 12 slRK~vkkie~~q~~ky~C~fCgk~~vkR~a--~GIW~C~~C~~ 53 (73)
T 1ffk_W 12 KIRVRVRDVEIKHKKKYKCPVCGFPKLKRAS--TSIWVCGHCGY 53 (73)
T ss_pred hHHHHHHHHHHhcccCccCCCCCCceeEEEE--eEEEECCCCCc
Confidence 346666777 567888999999987777665 59999999954
No 27
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Probab=22.29 E-value=23 Score=36.43 Aligned_cols=31 Identities=29% Similarity=0.648 Sum_probs=24.5
Q ss_pred CCCCCCcCCCCCCCCceecchhHHHHHHhhhhhh
Q 010188 26 PENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (516)
Q Consensus 26 PgNk~CADCGA~~P~WASvn~GVFLC~~CSgIHR 59 (516)
..+..|.=||..... ..|||+.|..|.+..|
T Consensus 48 ~~~~~C~vC~~~~~g---~hygv~~C~~C~~FFr 78 (419)
T 3dzy_D 48 LMAIECRVCGDKASG---FHYGVHACEGCKGFFR 78 (419)
T ss_dssp --CCCCSSSCSCCCS---BCSSSBCCHHHHHHHH
T ss_pred CCCCcCeECCCcCCC---CccCcccchhhhHHHc
Confidence 346779999987543 4899999999999876
No 28
>3g9m_A Glucocorticoid receptor; glucocorticoid, DNA-binding, allostery, lever ARM, transcription, hormone; HET: DNA; 1.61A {Rattus norvegicus} SCOP: g.39.1.2 PDB: 3g6p_A* 3g6q_B* 3g6r_B* 3g6u_A* 3g8u_A* 3g8x_A* 3g97_B* 3g99_A* 3g9i_A* 3g9j_A* 3fyl_A* 3g9o_B* 3g9p_B* 3g6t_A* 1r4o_A 1r4r_A 1glu_A* 1gdc_A 2gda_A 1rgd_A ...
Probab=21.13 E-value=17 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.582 Sum_probs=24.0
Q ss_pred CCCCCcCCCCCCCCceecchhHHHHHHhhhhhh
Q 010188 27 ENRECADCKAKGPRWASVNLGIFICMQCSGIHR 59 (516)
Q Consensus 27 gNk~CADCGA~~P~WASvn~GVFLC~~CSgIHR 59 (516)
|+..|.=||.... ...||++.|..|.+.-|
T Consensus 1 g~~~C~VCg~~a~---g~hyGv~sC~~Ck~FFR 30 (90)
T 3g9m_A 1 GSHMCLVCSDEAS---GCHYGVLTCGSCKVFFK 30 (90)
T ss_dssp -CCBCTTTCSBCC---EEETTEEECHHHHHHHH
T ss_pred CCCcCccCCCcCc---ccccCCccchhHhHHhh
Confidence 5788999997643 45899999999999776
No 29
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=20.97 E-value=31 Score=30.15 Aligned_cols=39 Identities=18% Similarity=0.456 Sum_probs=32.6
Q ss_pred CCCCCCcCCCCC-CCCceecchhHHHHHHhhhhhhcCCCc
Q 010188 26 PENRECADCKAK-GPRWASVNLGIFICMQCSGIHRSLGVH 64 (516)
Q Consensus 26 PgNk~CADCGA~-~P~WASvn~GVFLC~~CSgIHRsLG~h 64 (516)
.....|++|+.. -|.|=.-..|-.||-.|.-..+..+.+
T Consensus 57 ~~~~~C~~C~t~~tp~WRr~~~g~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 57 RAGTSCANCQTTTTTLWRRNANGDPVCNACGLYYKLHNIN 96 (115)
T ss_dssp CTTCCCTTTCCSCCSSCEECTTSCEECHHHHHHHHHHSSC
T ss_pred cccccCCCcCCCCcceeEECCCCCCcchHHHHHHHHhCCC
Confidence 456899999975 789999999989999998888776643
Done!