BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010191
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QFP|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFP|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Fluoride
pdb|2QFR|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
pdb|2QFR|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase With Bound Sulfate
Length = 424
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 39/276 (14%)
Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
G+IH +R+L N Y Y++G R N T + F P G D + GD+G
Sbjct: 77 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 129
Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYIS----QWDQFTAQ 352
Q NTT + K V +GD+ YA+ Y + +WD +
Sbjct: 130 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 177
Query: 353 IEPIASTVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLVENMFYVPTE---NRAKFWY 409
E + P++ +GNHE + + + E ++VP E + + FWY
Sbjct: 178 TERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWY 230
Query: 410 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYA 469
S + + + GT QY +++ L V R + PWLI L H L Y+S +
Sbjct: 231 SIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHF 289
Query: 470 VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
+EG E M R + + KYKVD+ GHVH YER
Sbjct: 290 MEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYER 321
>pdb|4DSY|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DSY|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc24201
pdb|4DT2|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DT2|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Cc27209
pdb|4DHL|A Chain A, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|B Chain B, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|D Chain D, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
pdb|4DHL|C Chain C, Crystal Structure Of Red Kidney Bean Purple Acid
Phosphatase In Complex With Maybridge Fragment Mo07123
Length = 426
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 39/276 (14%)
Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
G+IH +R+L N Y Y++G R N T + F P G D + GD+G
Sbjct: 79 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 131
Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYIS----QWDQFTAQ 352
Q NTT + K V +GD+ YA+ Y + +WD +
Sbjct: 132 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 179
Query: 353 IEPIASTVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLVENMFYVPTE---NRAKFWY 409
E + P++ +GNHE + + + E ++VP E + + FWY
Sbjct: 180 TERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWY 232
Query: 410 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYA 469
S + + + GT QY +++ L V R + PWLI L H L Y+S +
Sbjct: 233 SIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHF 291
Query: 470 VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
+EG E M R + + KYKVD+ GHVH YER
Sbjct: 292 MEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYER 323
>pdb|1KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|1KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|3KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|A Chain A, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|B Chain B, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|C Chain C, Kidney Bean Purple Acid Phosphatase
pdb|4KBP|D Chain D, Kidney Bean Purple Acid Phosphatase
Length = 432
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/276 (28%), Positives = 118/276 (42%), Gaps = 39/276 (14%)
Query: 238 GYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGK 297
G+IH +R+L N Y Y++G R N T + F P G D + GD+G
Sbjct: 85 GFIHHTTIRKLKYNTKYYYEVGLR--NTT----RRFSFITPPQTGLDVPYTFGLIGDLG- 137
Query: 298 DEADGSNEYNNFQRGSLNTTRQLIQ-DLKNIDIVFHIGDICYANGYIS----QWDQFTAQ 352
Q NTT + K V +GD+ YA+ Y + +WD +
Sbjct: 138 ------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADRYPNHDNVRWDTWGRF 185
Query: 353 IEPIASTVPYMIASGNHERDWPGTGSFYGNMDSGGECGVLVENMFYVPTE---NRAKFWY 409
E + P++ +GNHE + + + E ++VP E + + FWY
Sbjct: 186 TERSVAYQPWIWTAGNHEIE-------FAPEINETEPFKPFSYRYHVPYEASQSTSPFWY 238
Query: 410 STDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAHRVLGYSSDLSYA 469
S + + + GT QY +++ L V R + PWLI L H L Y+S +
Sbjct: 239 SIKRASAHIIVLSSYSAYGRGTPQYTWLKKELRKVKRSETPWLIVLMHSPL-YNSYNHHF 297
Query: 470 VEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
+EG E M R + + KYKVD+ GHVH YER
Sbjct: 298 MEG---EAM-RTKFEAWFVKYKVDVVFAGHVHAYER 329
>pdb|1XZW|A Chain A, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
pdb|1XZW|B Chain B, Sweet Potato Purple Acid PhosphatasePHOSPHATE COMPLEX
Length = 426
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 138/348 (39%), Gaps = 51/348 (14%)
Query: 167 NAPVYPRLAQGKVWNE-MTVTWTSGYGINEAEPFVEWGPKGGDRTYSPAGTLTFGRGSMC 225
NAP + QG + ++WT+ Y A W + + +T+ +
Sbjct: 23 NAPQQVHITQGDYEGRGVIISWTTPYDKAGANKVFYWSENSKSQKRAMGTVVTYKYYNYT 82
Query: 226 GAPARTVGWRDPGYIHTGFLRELWPNAMYTYKLGHRLFNGTYIWSSEYQFKASPYPGQDS 285
A +IH +++L + Y Y+LG F ++ F P PG D
Sbjct: 83 SA-----------FIHHCTIKDLEYDTKYYYRLG---FGDA---KRQFWFVTPPKPGPDV 125
Query: 286 LQQVIIFGDMGKDEADGSNEYNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYANGYIS- 344
+ GD+G+ S T Q+ V +GD+ Y+N + +
Sbjct: 126 PYVFGLIGDIGQ------------THDSNTTLTHYEQNSAKGQAVLFMGDLSYSNRWPNH 173
Query: 345 ---QWDQFTAQIEPIASTVPYMIASGNHERDW-PGTGSFYGNMDSGGECGVLVENMFYVP 400
+WD + E + P++ +GNHE D+ P G + + V N + P
Sbjct: 174 DNNRWDTWGRFSERSVAYQPWIWTAGNHEIDYAPDIGEY--------QPFVPFTNRYPTP 225
Query: 401 TENRAK---FWYSTDYGMFRFCIADTEQDWREGTEQYRFIEHCLASVDRQKQPWLIFLAH 457
E WY+ + + + + + QY++ L V+R + PWLI L H
Sbjct: 226 HEASGSGDPLWYAIKRASAHIIVLSSYSGFVKYSPQYKWFTSELEKVNRSETPWLIVLVH 285
Query: 458 RVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVFGHVHNYER 505
L Y+S ++ +EG E M R + + YKVDI GHVH+YER
Sbjct: 286 APL-YNSYEAHYMEG---EAM-RAIFEPYFVYYKVDIVFSGHVHSYER 328
>pdb|3THN|A Chain A, Crystal Structure Of Mre11 Core With Manganese
Length = 319
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 26/192 (13%)
Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
+ +D++ GD+ ++ N + ++ + T P ++ GN DW G +GN
Sbjct: 42 REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNQ--DWKGL-KLFGN 98
Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
+ + M + P + AK + F D + R+ +RF +E L
Sbjct: 99 FVTSISSDITF-VMSFEPVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 155
Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
+ + K+ + IF+ H + VEG GRE + + VD
Sbjct: 156 NKLYEEALKKEDFAIFMGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 205
Query: 495 AVFGHVHNYERI 506
A GH+H++ I
Sbjct: 206 AALGHIHSFREI 217
>pdb|2Q8U|A Chain A, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
(Tm1635) At 2.20 A Resolution
pdb|2Q8U|B Chain B, Crystal Structure Of Mre11 From Thermotoga Maritima Msb8
(Tm1635) At 2.20 A Resolution
Length = 336
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 26/192 (13%)
Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
+ +D++ GD+ ++ N + ++ T P ++ GNH DW G +GN
Sbjct: 60 REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRXXRTAPVVVLPGNH--DWKGL-KLFGN 116
Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
+ + F P + AK + F D + R+ +RF +E L
Sbjct: 117 FVTSISSDITFVXSFE-PVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 173
Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
+ + K+ + IF H + VEG GRE + + VD
Sbjct: 174 NKLYEEALKKEDFAIFXGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 223
Query: 495 AVFGHVHNYERI 506
A GH+H++ I
Sbjct: 224 AALGHIHSFREI 235
>pdb|3THO|B Chain B, Crystal Structure Of Mre11:rad50 In Its AtpADP BOUND STATE
Length = 379
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 75/192 (39%), Gaps = 26/192 (13%)
Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
+ +D++ GD+ ++ N + ++ + T P ++ GN DW G +GN
Sbjct: 42 REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRMMRTAPVVVLPGNQ--DWKGL-KLFGN 98
Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
+ + M + P + AK + F D + R+ +RF +E L
Sbjct: 99 FVTSISSDITF-VMSFEPVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 155
Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
+ + K+ + IF+ H + VEG GRE + + VD
Sbjct: 156 NKLYEEALKKEDFAIFMGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 205
Query: 495 AVFGHVHNYERI 506
A GH+H++ I
Sbjct: 206 AALGHIHSFREI 217
>pdb|3QG5|C Chain C, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|D Chain D, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 379
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 73/192 (38%), Gaps = 26/192 (13%)
Query: 325 KNIDIVFHIGDICYA--NGYISQWDQFTAQIEPIASTVPYMIASGNHERDWPGTGSFYGN 382
+ +D++ GD+ ++ N + ++ T P ++ GNH DW G +GN
Sbjct: 42 REVDLILLTGDLLHSRNNPSVVALHDLLDYLKRXXRTAPVVVLPGNH--DWKGL-KLFGN 98
Query: 383 MDSGGECGVLVENMFYVPTENRAKFWYSTDYGMFRFCIADTEQDWREGTEQYRF-IEHCL 441
+ + F P + AK + F D + R+ +RF +E L
Sbjct: 99 FVTSISSDITFVXSFE-PVDVEAK--RGQKVRILPFPYPDESEALRKNEGDFRFFLESRL 155
Query: 442 ASVDRQ---KQPWLIFLAHRVLGYSSDLSYAVEGSFAEP---MGRESL-QKLWQKYKVDI 494
+ + K+ + IF H + VEG GRE + + VD
Sbjct: 156 NKLYEEALKKEDFAIFXGH----------FTVEGLAGYAGIEQGREIIINRALIPSVVDY 205
Query: 495 AVFGHVHNYERI 506
A GH+H++ I
Sbjct: 206 AALGHIHSFREI 217
>pdb|2YEQ|A Chain A, Structure Of Phod
pdb|2YEQ|B Chain B, Structure Of Phod
Length = 527
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 25/103 (24%)
Query: 248 LWPNAMYTY--KLGHRLFNGTYIWSSEYQFKASPYPGQDSLQQVIIFGDMGKDEADGSNE 305
L PN +Y Y K GH L S + K P PG + Q F +
Sbjct: 82 LEPNKVYYYRFKTGHEL-------SPVGKTKTLPAPGANVPQMTFAFASCQQ-------- 126
Query: 306 YNNFQRGSLNTTRQLIQDLKNIDIVFHIGDICYA---NGYISQ 345
++ G + + ++ +D+VFH+GD Y N Y+S+
Sbjct: 127 ---YEHGYYTAYKHMAKE--KLDLVFHLGDYIYEYGPNEYVSK 164
>pdb|3NAW|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NAW|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|A Chain A, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|B Chain B, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|C Chain C, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
pdb|3NB2|D Chain D, Crystal Structure Of E. Coli O157:h7 Effector Protein Nlel
Length = 613
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 439 HCLASVDRQKQPWLIF-LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVF 497
H L + +KQ ++F L YSS + E E + R + + Q YK D VF
Sbjct: 503 HVLKDMPLRKQAEILFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF 562
Query: 498 GHVHNYERICPIYQ 511
G V+ Y I Q
Sbjct: 563 GSVYYYNDILDRLQ 576
>pdb|3SQV|A Chain A, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|B Chain B, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
Length = 616
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
Query: 439 HCLASVDRQKQPWLIF-LAHRVLGYSSDLSYAVEGSFAEPMGRESLQKLWQKYKVDIAVF 497
H L + +KQ ++F L YSS + E E + R + + Q YK D VF
Sbjct: 506 HVLKDMPLRKQAEILFCLGGVFCKYSSSDMFGTEYDSPEILRRYANGLIEQAYKTDPQVF 565
Query: 498 GHVHNYERICPIYQ 511
G V+ Y I Q
Sbjct: 566 GSVYYYNDILDRLQ 579
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,961,778
Number of Sequences: 62578
Number of extensions: 839586
Number of successful extensions: 1552
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1537
Number of HSP's gapped (non-prelim): 15
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)