BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010192
(515 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0DH90|FRIGI_ARATH Protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1
Length = 609
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 135/289 (46%), Gaps = 37/289 (12%)
Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
C M ++G K++ + +L +P+AL +PAKFV++ I + + +R+ +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208
Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
+ A +L+LES ++ P GK ++ + +K++A+ A W+ L GG+
Sbjct: 209 PMSSARQVSLLILESF---LLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265
Query: 245 KTPDVHTFLQLLVTFGI---VKKED-VDLYR----KLVVGSAWRKQMPKLAVSLGLGDKM 296
+ D L L+ FG+ + D +DL R + G+ R Q VS
Sbjct: 266 EKMDARGLLLLVACFGVPSNFRSTDLLDLIRMSGSNEIAGALKRSQFLVPMVS------- 318
Query: 297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAA 356
++E I RG ++A+ Y G+ DKF +L +FLK +K E A R A
Sbjct: 319 -GIVESSIKRGMHIEALEMVYTFGMEDKFSAALVLTSFLKMSK-------ESFERAKRKA 370
Query: 357 HL------AARKEQSALRAVIKCIEDYKLQ--GEFPPENLKKRLEQLEK 397
AA K+ + L +V++C+E +KL E P +K+++ LEK
Sbjct: 371 QSPLAFKEAATKQLAVLSSVMQCMETHKLDPAKELPGWQIKEQIVSLEK 419
>sp|Q67Z93|FRIG0_ARATH Inactive protein FRIGIDA OS=Arabidopsis thaliana GN=FRI PE=2 SV=1
Length = 314
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 68/137 (49%), Gaps = 6/137 (4%)
Query: 128 CLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGN 187
C M ++G K++ + +L +P+AL +PAKFV++ I + + +R+ +
Sbjct: 149 CELMCSKGLRKYIYANISDQAKLMEEIPSALKLAKEPAKFVLDCIGKFYLQGRRAFTKES 208
Query: 188 DLGWA---CVLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENV 244
+ A +L+LES ++ P GK ++ + +K++A+ A W+ L GG+
Sbjct: 209 PMSSARQVSLLILESF---LLMPDRGKGKVKIESWIKDEAETAAVAWRKRLMTEGGLAAA 265
Query: 245 KTPDVHTFLQLLVTFGI 261
+ D L L+ FG+
Sbjct: 266 EKMDARGLLLLVACFGV 282
>sp|B2A611|ADDB_NATTJ ATP-dependent helicase/deoxyribonuclease subunit B
OS=Natranaerobius thermophilus (strain ATCC BAA-1301 /
DSM 18059 / JW/NM-WN-LF) GN=addB PE=3 SV=1
Length = 1186
Score = 36.6 bits (83), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 235 LEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGD 294
LEE+GGI D + ++ + +K+D+++ K+ V S + +++ +L + +
Sbjct: 76 LEEQGGIAKADLSDTGKEM-IIKNILLQRKDDLEILEKVAVKSGFSEKLSRLISEARMYE 134
Query: 295 KMPEMIEELISRGQQLDAVHF 315
PEM+E++ Q+LD +H
Sbjct: 135 ITPEMLEQI---SQELDLIHL 152
>sp|Q6F0U4|NADE_MESFL NH(3)-dependent NAD(+) synthetase OS=Mesoplasma florum (strain ATCC
33453 / NBRC 100688 / NCTC 11704 / L1) GN=nadE PE=3 SV=1
Length = 244
Score = 36.2 bits (82), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 50/114 (43%), Gaps = 11/114 (9%)
Query: 303 LISRGQQLDAVHFTYEV----GLVDKFPPVPLLKAFLKDAKKAA---VSILEDPNNAGRA 355
L+ LD H Y G VD P V LLK +++A + SI+ N A A
Sbjct: 129 LVLGTDNLDEWHIGYFTKFGDGGVDMVPLVHLLKREVREAARILGVPTSII---NRAPTA 185
Query: 356 AHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAAVP 409
+ + ++S L I+ Y L GE EN+K R++ L K K+ A P
Sbjct: 186 SLWEDQTDESELGITYDQIDAY-LAGEINDENVKSRVDHLHKISEHKRNGAVAP 238
>sp|Q21338|SPT5H_CAEEL Transcription elongation factor SPT5 OS=Caenorhabditis elegans
GN=spt-5 PE=3 SV=3
Length = 1208
Score = 34.7 bits (78), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 420 GPMPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPE 479
G M PA G T AY P ++P++ ++ SR+P Y +
Sbjct: 826 GSMTPAYDGGRTPAYGEGGRTPAYGSKTPAYGDLDEHSSSRTPAYGNDSSRTPAYGSADG 885
Query: 480 AAPPLAGSYPGAPMNYPAYGGYGNGLAPAYQQA 512
A P GS G PAYG N PAY +
Sbjct: 886 ARTPAYGSTEGG--RTPAYGSMDNSRTPAYDDS 916
>sp|Q5ND29|RILP_MOUSE Rab-interacting lysosomal protein OS=Mus musculus GN=Rilp PE=1 SV=1
Length = 369
Score = 34.7 bits (78), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 53 SAALRHKIQTLDTQTKASLDVLKKREVTIDGSVEIAMEK 91
++ LRHK+ + TQ +A+ D ++R++ DGS ++A E+
Sbjct: 154 NSELRHKLAAVQTQLRAAQDRERERQIAQDGSSQLAKEQ 192
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 34.3 bits (77), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 434 YVSSFPAPPTFVRSPSHTQYPAGVT-AYASPPAVYGSRSPPYAYSPE------AAPPLAG 486
Y F P+ SP+H+ + +GVT Y+ P + G SP +SP A+P G
Sbjct: 1490 YGGGFAGSPSREFSPAHSPWNSGVTPNYSGPWSPTGGMSPSAGFSPAGNLDGGASPFNEG 1549
Query: 487 SY----PGAPMN-----YPAYGGYGNGL 505
+ PG P+ PAYGG G+
Sbjct: 1550 GWSPASPGDPLGALSPRTPAYGGMSPGV 1577
>sp|P17931|LEG3_HUMAN Galectin-3 OS=Homo sapiens GN=LGALS3 PE=1 SV=5
Length = 250
Score = 33.5 bits (75), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 454 PAGVTAY--ASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPA 497
PAG Y AS P Y ++PP AY +A P G+YPGAP YP
Sbjct: 30 PAGAGGYPGASYPGAYPGQAPPGAYPGQAPP---GAYPGAPGAYPG 72
>sp|A4IH17|BAG6_XENTR Large proline-rich protein bag6 OS=Xenopus tropicalis GN=Bag6 PE=2
SV=1
Length = 1129
Score = 33.1 bits (74), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 54/122 (44%), Gaps = 5/122 (4%)
Query: 382 EFPPENLKKRLEQLEKAKTEKKKPAAVPATKRTRASNGGP--MPPAKAGRLTNAYVSSFP 439
E PP ++ ++ + + +P + + GGP +PP AG +A++
Sbjct: 391 EIPPTSVPHPHPRVVRITHQTVEPVMMMHMNIQDSGPGGPTNIPPPTAGHGGSAHIHMPG 450
Query: 440 APPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPP-YAYSPEAAPPLAGSYPGAPMNYPAY 498
PP F+++ SH Q A AS + G ++PP + ++ AAP PG P
Sbjct: 451 LPPEFMQAISH-QITQQAVAAASGQQIPGFQAPPRFVFTRPAAPSFP-PQPGVATTPPGP 508
Query: 499 GG 500
GG
Sbjct: 509 GG 510
>sp|Q9MZT1|CLCN1_CANFA Chloride channel protein 1 OS=Canis familiaris GN=CLCN1 PE=1 SV=1
Length = 976
Score = 32.7 bits (73), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 378 KLQGEFPPENLKKRLEQLEKAKTEKKKP-AAVPATKRTRASNGGPMPPAKAGRL 430
KL+G E L+K +E K+ + + P A+ +T TR + GGP PP +A L
Sbjct: 851 KLRGVLALEELQKAIEGHTKSGVQLRPPLASFRSTTSTRKNPGGPPPPTEAWSL 904
>sp|Q9YHD3|BAG6A_XENLA Large proline-rich protein bag6-A OS=Xenopus laevis GN=Bag6-a PE=2
SV=1
Length = 1135
Score = 32.7 bits (73), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 44/88 (50%), Gaps = 5/88 (5%)
Query: 416 ASNGGP--MPPAKAGRLTNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPP 473
+++GGP +PP AG +A++ PP F+++ SH Q A AS + G ++PP
Sbjct: 429 SASGGPTTIPPPTAGHGGSAHIHMPGLPPEFMQAISH-QITQQAMAAASGQQIPGFQAPP 487
Query: 474 -YAYSPEAAPPLAGSYPGAPMNYPAYGG 500
+ ++ AAP PG P GG
Sbjct: 488 RFVFTRPAAPSFQ-FQPGTATTPPGPGG 514
>sp|Q5R9T2|VP37C_PONAB Vacuolar protein sorting-associated protein 37C OS=Pongo abelii
GN=VPS37C PE=2 SV=1
Length = 355
Score = 32.7 bits (73), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 431 TNAYVSSFPAPPTFVRSPSHTQYPAGVTAYASPPAVYGSRSPPYAYSPEAAPPLAGSYPG 490
+ A+ + PAP V PS P G T A+ P G+ Y++SP+ + P YPG
Sbjct: 217 STAHGALPPAPFPVVSQPSFYSGPLGPTYPAAQPGPRGAAG--YSWSPQRSTPPRPGYPG 274
Query: 491 APM-----NYPAYGGYGNGLAPAY-QQAYY 514
P YP G G L+P Y QQ+ Y
Sbjct: 275 TPTGASGPGYPLAG--GRALSPGYPQQSPY 302
>sp|B0S1D0|RNY_FINM2 Ribonuclease Y OS=Finegoldia magna (strain ATCC 29328) GN=rny PE=3
SV=1
Length = 513
Score = 32.7 bits (73), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 21 FQRQTSLMTSCTLLWKELS---DHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKR 77
F+ ++ L KE+S D S E+NL++K+A+L K + LD++ K + D+ K
Sbjct: 67 FKMKSDLDRENKSRLKEISRQEDRLNSKEENLERKNASLEKKHKKLDSELKKADDMQLKI 126
Query: 78 EVTIDGSVEIAMEKL 92
+ ID E+ +EK+
Sbjct: 127 QSLIDEK-ELELEKV 140
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 196,956,101
Number of Sequences: 539616
Number of extensions: 8581237
Number of successful extensions: 28913
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 422
Number of HSP's that attempted gapping in prelim test: 27359
Number of HSP's gapped (non-prelim): 1658
length of query: 515
length of database: 191,569,459
effective HSP length: 122
effective length of query: 393
effective length of database: 125,736,307
effective search space: 49414368651
effective search space used: 49414368651
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 64 (29.3 bits)