Query 010192
Match_columns 515
No_of_seqs 140 out of 161
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 22:07:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010192.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010192hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07899 Frigida: Frigida-like 100.0 4.2E-89 9E-94 690.6 30.9 279 116-407 7-287 (290)
2 PF07035 Mic1: Colon cancer-as 95.4 0.04 8.7E-07 52.8 6.8 79 250-332 45-128 (167)
3 KOG0260 RNA polymerase II, lar 87.9 1.8 3.9E-05 52.1 8.5 14 359-372 1336-1349(1605)
4 KOG2236 Uncharacterized conser 79.3 17 0.00037 40.2 10.8 18 382-399 320-337 (483)
5 KOG1924 RhoA GTPase effector D 79.2 12 0.00026 43.9 10.0 19 410-428 517-535 (1102)
6 KOG2005 26S proteasome regulat 70.0 2.3E+02 0.005 33.4 16.9 74 266-339 267-346 (878)
7 TIGR01837 PHA_granule_1 poly(h 63.1 22 0.00048 32.2 6.2 34 368-401 81-114 (118)
8 KOG0921 Dosage compensation co 57.2 1.3E+02 0.0027 36.7 12.2 38 363-400 1097-1137(1282)
9 KOG3107 Predicted haloacid deh 55.4 11 0.00023 41.0 3.2 9 506-514 107-115 (468)
10 PF07223 DUF1421: Protein of u 53.6 27 0.00059 37.6 5.9 34 466-503 219-256 (358)
11 COG3937 Uncharacterized conser 52.8 40 0.00087 30.5 5.9 77 294-400 24-100 (108)
12 PF12925 APP_E2: E2 domain of 52.0 68 0.0015 31.8 7.9 92 4-105 18-122 (193)
13 PF06705 SF-assemblin: SF-asse 46.3 2.3E+02 0.005 28.4 11.0 53 120-175 180-234 (247)
14 PF09726 Macoilin: Transmembra 46.0 1.3E+02 0.0029 35.2 10.4 59 19-77 425-496 (697)
15 PRK06771 hypothetical protein; 45.1 32 0.00069 30.4 4.0 36 283-318 39-77 (93)
16 KOG3875 Peroxisomal biogenesis 44.3 46 0.001 35.4 5.7 23 462-484 42-66 (362)
17 PRK05563 DNA polymerase III su 43.2 5.5E+02 0.012 29.2 16.9 66 244-311 212-279 (559)
18 PF10873 DUF2668: Protein of u 43.1 47 0.001 31.7 5.0 9 490-498 144-152 (155)
19 KOG2893 Zn finger protein [Gen 42.2 82 0.0018 32.5 6.9 22 402-423 90-112 (341)
20 KOG2236 Uncharacterized conser 41.2 79 0.0017 35.2 7.1 12 461-472 436-447 (483)
21 KOG0608 Warts/lats-like serine 39.2 1E+02 0.0023 36.2 7.8 13 438-450 197-209 (1034)
22 smart00502 BBC B-Box C-termina 39.2 1.3E+02 0.0028 25.7 7.0 53 10-62 15-68 (127)
23 PF12825 DUF3818: Domain of un 36.8 1.6E+02 0.0034 31.6 8.5 114 127-261 96-217 (341)
24 KOG2377 Uncharacterized conser 33.7 40 0.00086 37.8 3.4 83 249-340 527-614 (657)
25 PF04156 IncA: IncA protein; 32.8 2.2E+02 0.0047 27.1 8.0 50 13-65 92-144 (191)
26 PF08711 Med26: TFIIS helical 31.5 51 0.0011 25.2 2.9 21 216-236 33-53 (53)
27 PF12718 Tropomyosin_1: Tropom 30.9 2E+02 0.0044 26.8 7.3 59 20-79 50-108 (143)
28 PF06825 HSBP1: Heat shock fac 30.9 92 0.002 24.9 4.2 33 34-66 11-43 (54)
29 TIGR00443 hisZ_biosyn_reg ATP 30.1 2.8E+02 0.0061 28.7 8.9 48 273-320 145-192 (314)
30 PF07139 DUF1387: Protein of u 29.5 1.3E+02 0.0028 31.9 6.2 127 13-177 154-290 (302)
31 PF04124 Dor1: Dor1-like famil 28.7 86 0.0019 33.0 4.9 51 296-346 109-160 (338)
32 KOG1923 Rac1 GTPase effector F 28.2 4.3E+02 0.0093 31.6 10.4 17 360-376 215-231 (830)
33 PF09849 DUF2076: Uncharacteri 27.9 2.6E+02 0.0057 28.7 8.0 17 385-401 57-73 (247)
34 COG5498 ACF2 Predicted glycosy 27.5 1E+02 0.0022 35.6 5.4 70 443-513 33-113 (760)
35 PF13874 Nup54: Nucleoporin co 26.4 1.5E+02 0.0031 27.5 5.4 38 3-46 17-54 (141)
36 PHA02086 hypothetical protein 25.8 70 0.0015 27.3 2.9 35 272-307 41-82 (88)
37 PF10873 DUF2668: Protein of u 25.0 1.2E+02 0.0027 28.9 4.6 42 434-478 106-151 (155)
38 PF10498 IFT57: Intra-flagella 24.9 2.9E+02 0.0063 29.8 8.1 42 25-66 226-267 (359)
39 KOG3088 Secretory carrier memb 23.7 43 0.00093 35.2 1.5 25 39-64 53-77 (313)
40 KOG0844 Transcription factor E 22.3 40 0.00086 35.8 0.9 12 388-399 189-200 (408)
41 PF05130 FlgN: FlgN protein; 21.5 5.4E+02 0.012 22.3 8.4 15 90-104 54-68 (143)
42 PRK14963 DNA polymerase III su 21.3 1.2E+03 0.026 26.2 13.1 21 381-401 356-376 (504)
43 PRK12704 phosphodiesterase; Pr 20.9 3.6E+02 0.0078 30.5 8.1 31 36-66 78-108 (520)
44 PF11914 DUF3432: Domain of un 20.8 1.6E+02 0.0034 26.1 4.1 19 481-499 58-76 (99)
45 PHA01750 hypothetical protein 20.1 2.6E+02 0.0056 23.5 5.0 40 355-402 35-74 (75)
No 1
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=100.00 E-value=4.2e-89 Score=690.61 Aligned_cols=279 Identities=48% Similarity=0.753 Sum_probs=264.1
Q ss_pred CCcchHHHHHHHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcccCCCCCCC--CCCchhhHHH
Q 010192 116 DGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSD--KSGNDLGWAC 193 (515)
Q Consensus 116 ~~~~~~~~L~~lCe~MD~~gL~kfi~~~~ke~~~lr~Elp~ALr~ApDPAkLVLdai~~fy~~~~~~~--~~~~~~~~aC 193 (515)
....++++|+.||++||++||++||++|+|++.+||+|||+||++|||||+||||||++||+++.+.+ ....+.+|+|
T Consensus 7 ~~~~~~~~L~~lC~~MD~~gL~~fv~~~~k~~~~lr~Ev~~AL~~A~DPAkLVLdai~~f~~~~~~~~~~~~~~~~r~~c 86 (290)
T PF07899_consen 7 VEVKPRPELKSLCEKMDGKGLRKFVSENRKELASLREEVPAALRCAPDPAKLVLDAIEGFYPPGSKNKKDSKLVDVRRAC 86 (290)
T ss_pred CCcchHHHHHHHHHHCCHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCChHHHHHHHHHcccCCccccccCcchhhHHHHH
Confidence 45568999999999999999999999999999999999999999999999999999999999876542 3345788999
Q ss_pred HHHHHhhcccccCccccccCCCCChhHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHhcCCcccCHHHHHHH
Q 010192 194 VLVLESLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGIVKKEDVDLYRKL 273 (515)
Q Consensus 194 ilLLE~L~~~l~~p~~G~~~p~vs~~vkeeAk~lA~~WK~kl~~~g~~~~~~~lea~gFLqlLa~fGI~seFd~del~~L 273 (515)
|+|||+|++. +|.++++||++|++||.+||++|+ ++++.+++|||||||||++|||+++||.|||++|
T Consensus 87 ilLLE~L~~~---------~~~is~~vke~A~~lA~~WK~~l~---~~~~~~~lea~gFL~lla~fgi~s~Fd~del~~L 154 (290)
T PF07899_consen 87 ILLLEQLMRI---------SPEISPEVKEEAKKLAEEWKSKLD---GVNNENSLEALGFLQLLAAFGIVSEFDEDELLKL 154 (290)
T ss_pred HHHHHHHhhc---------CCCCCHHHHHHHHHHHHHHHHHHH---hcccCCCHHHHHHHHHHHHcCCccccCHHHHHHH
Confidence 9999999862 578999999999999999999996 4567889999999999999999999999999999
Q ss_pred hhcccchhhhHHHHHhcCCCCChhHHHHHHHHcCcchHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHhcCCCCch
Q 010192 274 VVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAG 353 (515)
Q Consensus 274 v~~va~rkq~~eL~~sLGL~~KmpdiIe~LI~kGk~IeAV~fi~aF~L~dkFpPvpLLKsyl~~akk~~~~~~~~g~~s~ 353 (515)
|..+++|+|+++||++|||++||||||++||++||||+||+|||+|||+||||||||||+||+++|++++.++++++++
T Consensus 155 v~~va~~~~a~~L~~sLgl~~k~~d~V~~LI~~g~~ieAv~fi~~f~L~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~- 233 (290)
T PF07899_consen 155 VVSVARRKQAPELCRSLGLSDKMPDIVEKLIKKGKQIEAVRFIYAFGLVDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS- 233 (290)
T ss_pred HHHhcchHhhHHHHHHcCchhhhHHHHHHHHHCCCccchHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhccCCCC
Q 010192 354 RAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEKKKPAA 407 (515)
Q Consensus 354 ~a~~eA~~kEl~aLksViKcIEd~KLese~p~~~L~krI~qLEK~k~ekKr~~~ 407 (515)
+++++|++||+++||+|||||||||||++||+++|++||.||||+|++|||+++
T Consensus 234 ~a~~ea~~kel~aL~~vikcIee~kLes~~~~~~l~kri~~Lek~~~~~kr~~~ 287 (290)
T PF07899_consen 234 EAQNEANEKELAALKSVIKCIEEHKLESEFPLEPLQKRIEQLEKQKADRKRAAE 287 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccChHHHHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999999999875
No 2
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.44 E-value=0.04 Score=52.82 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=60.0
Q ss_pred HHHHHHHHHhcCCcccCHHHHHHHhhccc-----chhhhHHHHHhcCCCCChhHHHHHHHHcCcchHHHHHHHHhcCCCC
Q 010192 250 HTFLQLLVTFGIVKKEDVDLYRKLVVGSA-----WRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVDK 324 (515)
Q Consensus 250 ~gFLqlLa~fGI~seFd~del~~Lv~~va-----~rkq~~eL~~sLGL~~KmpdiIe~LI~kGk~IeAV~fi~aF~L~dk 324 (515)
...|+.+..|++.. |...+...+++.. .++-+.+.++.||..+. .||+.|+.+|++++|++||...+-++.
T Consensus 45 ~~~L~qllq~~Vi~--DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~--~iievLL~~g~vl~ALr~ar~~~~~~~ 120 (167)
T PF07035_consen 45 FSQLHQLLQYHVIP--DSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYE--EIIEVLLSKGQVLEALRYARQYHKVDS 120 (167)
T ss_pred HHHHHHHHhhcccC--CcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHH--HHHHHHHhCCCHHHHHHHHHHcCCccc
Confidence 47788888999998 7666665555443 23345666677775543 577899999999999999999999999
Q ss_pred CCChHHHH
Q 010192 325 FPPVPLLK 332 (515)
Q Consensus 325 FpPvpLLK 332 (515)
.||.-+|.
T Consensus 121 ~~~~~fLe 128 (167)
T PF07035_consen 121 VPARKFLE 128 (167)
T ss_pred CCHHHHHH
Confidence 98877665
No 3
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=87.92 E-value=1.8 Score=52.14 Aligned_cols=14 Identities=14% Similarity=0.166 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHH
Q 010192 359 AARKEQSALRAVIK 372 (515)
Q Consensus 359 A~~kEl~aLksViK 372 (515)
.|=+-++.|..|+-
T Consensus 1336 VnyrhlaLl~dvmT 1349 (1605)
T KOG0260|consen 1336 VNYRHLALLCDVMT 1349 (1605)
T ss_pred hhHHHHHHHHHHHh
Confidence 33444444444443
No 4
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.32 E-value=17 Score=40.20 Aligned_cols=18 Identities=17% Similarity=0.455 Sum_probs=8.6
Q ss_pred CCChhHHHHHHHHHHHhh
Q 010192 382 EFPPENLKKRLEQLEKAK 399 (515)
Q Consensus 382 e~p~~~L~krI~qLEK~k 399 (515)
+|+-+.-+.--.|+.|++
T Consensus 320 dfSDDEkEaeak~~kKQr 337 (483)
T KOG2236|consen 320 DFSDDEKEAEAKQMKKQR 337 (483)
T ss_pred ccchHHHHHHHHHHHHHh
Confidence 454444444445554544
No 5
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=79.23 E-value=12 Score=43.88 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=11.0
Q ss_pred CccCcccCCCCCCCCcccc
Q 010192 410 ATKRTRASNGGPMPPAKAG 428 (515)
Q Consensus 410 ~~KR~R~s~g~~~p~a~~~ 428 (515)
+++-+-..+|-++||+...
T Consensus 517 ~~~~~~~~~~iP~PP~~pp 535 (1102)
T KOG1924|consen 517 PSQLLPIDGGIPPPPPLPP 535 (1102)
T ss_pred cccCCCCCCCCCCCCCCCC
Confidence 4555555566667765554
No 6
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=70.00 E-value=2.3e+02 Score=33.39 Aligned_cols=74 Identities=18% Similarity=0.351 Sum_probs=54.0
Q ss_pred CHHHHHHHhhccc---chhhhHHHHHhcCCCCCh--hHHHHHHHHcCcchHHH-HHHHHhcCCCCCCChHHHHHHHHHHH
Q 010192 266 DVDLYRKLVVGSA---WRKQMPKLAVSLGLGDKM--PEMIEELISRGQQLDAV-HFTYEVGLVDKFPPVPLLKAFLKDAK 339 (515)
Q Consensus 266 d~del~~Lv~~va---~rkq~~eL~~sLGL~~Km--pdiIe~LI~kGk~IeAV-~fi~aF~L~dkFpPvpLLKsyl~~ak 339 (515)
|.+++...|.+.. .+||+.=+...-|+.-.+ .+=++..++||+--|-. .++.+.++.+-=-|-.|+|+|+.++|
T Consensus 267 ~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~Lse~f~~LarELeimepk~pedIyK~hl~~~r 346 (878)
T KOG2005|consen 267 DMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKLSEHFLYLARELEIMEPKVPEDIYKSHLEDSR 346 (878)
T ss_pred cHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccHHHHHHHHHHHhcccCCCChHHHHHHHHhccc
Confidence 4455555554432 467776655555555555 36778889999888765 46889999999999999999999977
No 7
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=63.07 E-value=22 Score=32.15 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=27.0
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhh
Q 010192 368 RAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTE 401 (515)
Q Consensus 368 ksViKcIEd~KLese~p~~~L~krI~qLEK~k~e 401 (515)
..|-+.+...++-+.=-++.|.+||.+||++-.+
T Consensus 81 ~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~ 114 (118)
T TIGR01837 81 ERVEQALNRLNIPSREEIEALSAKIEQLAVQVEE 114 (118)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888866678999999999987543
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=57.16 E-value=1.3e+02 Score=36.70 Aligned_cols=38 Identities=16% Similarity=0.166 Sum_probs=26.3
Q ss_pred HHHHHHHHHHH--HHhhcCCCC-CChhHHHHHHHHHHHhhh
Q 010192 363 EQSALRAVIKC--IEDYKLQGE-FPPENLKKRLEQLEKAKT 400 (515)
Q Consensus 363 El~aLksViKc--IEd~KLese-~p~~~L~krI~qLEK~k~ 400 (515)
-|.+||+.++- +|-.|--+. -.+|+..+|+.++=++..
T Consensus 1097 cItgLr~AmEaLvvev~knPaiIsqLdpvnarllnmiRdIs 1137 (1282)
T KOG0921|consen 1097 CITGLRPAMEALVVEVCKNPAIISQLDPVNARLLNMIRDIS 1137 (1282)
T ss_pred HHhhhHHHHHHHHHHHhcChhHhhccCchhHHHHHHHHHhc
Confidence 46778887765 455555443 446888899988888776
No 9
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=55.43 E-value=11 Score=40.99 Aligned_cols=9 Identities=44% Similarity=0.907 Sum_probs=5.4
Q ss_pred Ccccccccc
Q 010192 506 APAYQQAYY 514 (515)
Q Consensus 506 ~~~~~~~y~ 514 (515)
|-+||+.||
T Consensus 107 q~qY~~yY~ 115 (468)
T KOG3107|consen 107 QAQYQNYYY 115 (468)
T ss_pred hHhhccccc
Confidence 346776665
No 10
>PF07223 DUF1421: Protein of unknown function (DUF1421); InterPro: IPR010820 This family represents a conserved region approximately 350 residues long within a number of plant proteins of unknown function.
Probab=53.58 E-value=27 Score=37.59 Aligned_cols=34 Identities=41% Similarity=0.879 Sum_probs=17.2
Q ss_pred CCCCCCC-CCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCC
Q 010192 466 VYGSRSP-PYAYSPEAAPPLA---GSYPGAPMNYPAYGGYGN 503 (515)
Q Consensus 466 ~y~~~~~-~y~y~~~~~~~~~---~~y~~~~~~~~~~~~y~~ 503 (515)
.||...+ +|.|++....+.+ ..|..++ +|+|||+
T Consensus 219 ~~~~~~~~~y~y~~~~~~p~~~~~~~~~~~p----~~~Gy~~ 256 (358)
T PF07223_consen 219 FYGEPDPSPYMYGPPASRPPSGMPQHQQPPP----SQGGYGY 256 (358)
T ss_pred cCCCCCCCCcccCCCCCCCCccccccCCCCc----ccccccC
Confidence 3443333 7888877544432 3454444 3444544
No 11
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=52.81 E-value=40 Score=30.47 Aligned_cols=77 Identities=18% Similarity=0.361 Sum_probs=45.7
Q ss_pred CChhHHHHHHHHcCcchHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHhcCCCCchHHhhHHHHHHHHHHHHHHHH
Q 010192 294 DKMPEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKC 373 (515)
Q Consensus 294 ~KmpdiIe~LI~kGk~IeAV~fi~aF~L~dkFpPvpLLKsyl~~akk~~~~~~~~g~~s~~a~~eA~~kEl~aLksViKc 373 (515)
+|..++|+.|+++|+-- .+.+|+.+..+.+... .++.+...|.-.-++ ..
T Consensus 24 ek~~klvDelVkkGeln------------------------~eEak~~vddl~~q~k---~~~~e~e~K~~r~i~---~m 73 (108)
T COG3937 24 EKVQKLVDELVKKGELN------------------------AEEAKRFVDDLLRQAK---EAQGELEEKIPRKIE---EM 73 (108)
T ss_pred HHHHHHHHHHHHcCCCC------------------------HHHHHHHHHHHHHHHH---HHhhhHHHhhhHHHH---HH
Confidence 57889999999999742 1233333333332211 223444555333333 33
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhhh
Q 010192 374 IEDYKLQGEFPPENLKKRLEQLEKAKT 400 (515)
Q Consensus 374 IEd~KLese~p~~~L~krI~qLEK~k~ 400 (515)
++++.+--.=+.+.+..||..||++.+
T Consensus 74 l~~~~~~r~~~~~~l~~rvd~Lerqv~ 100 (108)
T COG3937 74 LSDLEVARQSEMDELTERVDALERQVA 100 (108)
T ss_pred HhhccccccchHHHHHHHHHHHHHHHH
Confidence 556665555666888999999988754
No 12
>PF12925 APP_E2: E2 domain of amyloid precursor protein; InterPro: IPR024329 Amyloid-beta precursor protein (APP, or A4) is associated with Alzheimer's disease (AD), because one of its breakdown products, amyloid-beta (A-beta), aggregates to form amyloid or senile plaques [, ]. Mutations in APP or in proteins that process APP have been linked with early-onset, familial AD. Individuals with Down's syndrome carry an extra copy of chromosome 21, which contains the APP gene, and almost invariably develop amyloid plaques and Alzheimer's symptoms. APP is important for the neurogenesis and neuronal regeneration, either through the intact protein, or through its many breakdown products []. APP consists of a large N-terminal extracellular region containing heparin-binding and copper-binding sites, a short hydrophobic transmembrane domain, and a short C-terminal intracellular domain. The N-terminal region is similar in structure to cysteine-rich growth factors and appears to function as a cell surface receptor, contributing to neurite growth, neuronal adhesion, axonogenesis and cell mobility []. APP acts as a kinesin I membrane receptor to mediate the axonal transport of beta-secretase and presenilin 1. The N-terminal domain can regulate neurite outgrowth through its binding to heparin and collagen I and IV, which are components of the extracellular matrix. APP is also coupled to apoptosis-inducing pathways, and is involved in copper homeostasis/oxidative stress through copper ion reduction, where copper-metallated APP induces neuronal death []. The C-terminal intracellular domain appears to be involved in transcription regulation through protein-protein interactions. APP can promote transcription activation through binding to APBB1/Tip60, and may bind to the adaptor protein FE65 to transactivate a wide variety of different promoters. APP can be processed by different sets of enzymes: In the non-amyloidogenic (non-plaque-forming) pathway, APP is cleaved by alpha-secretase to yield a soluble N-terminal sAPP-alpha (neuroprotective) and a membrane-bound CTF-alpha. CTF-alpha is broken-down by presenilin-containing gamma-secretase to yield soluble p3 and membrane-bound AICD (nuclear signalling). In the amyloidogenic pathway (plaque-forming), APP is broken down by beta-secretase to yield soluble sAPP-beta and membrane-bound CTF-beta. CTF-beta is broken down by gamma-secretase to yield soluble amyloid-beta and membrane-bound AICD. Amyloid-beta is required for neuronal function, but can aggregate to form amyloid plaques that seem to disrupt brain cells by clogging points of cell-cell contact. The E2 domain is the largest of the conserved domains in the amyloidogenic glycoproteins. The structure of E2 consists of two coiled-coil sub-structures connected through a continuous helix, and bears an unexpected resemblance to the spectrin family of protein structures. E2 can reversibly dimerise in solution, and the dimerisation occurs along the longest dimension of the molecule in an antiparallel orientation, which enables the N-terminal substructure of one monomer to pack against the C-terminal substructure of a second monomer. The high degree of conservation of residues at the putative dimer interface suggests that the E2 dimer observed in the crystal could be physiologically relevant. Heparin sulphate proteoglycans, the putative ligands for the precursor present in extracellular matrix, bind to E2 at a conserved and positively charged site near the dimer interface [].; PDB: 3K6B_A 3K66_A 1TKN_A 3NYL_A 3NYJ_A 3UMH_A 3UMK_A 3UMI_A 3QMK_B 3PMR_B ....
Probab=52.02 E-value=68 Score=31.84 Aligned_cols=92 Identities=13% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCCCchhhhhchHHHHHHHh-hhhhhhhhccchhHHHhhHHHH-----------HHHHHHHHHHHHHHHhhhhhhhh-hH
Q 010192 4 IPDPGELSELNPLSFDEFQR-QTSLMTSCTLLWKELSDHFTSL-----------EQNLQKKSAALRHKIQTLDTQTK-AS 70 (515)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs-~~s~l~s~tl~W~eL~~HF~sL-----------e~sL~~r~e~L~~~~~~~e~~~~-~~ 70 (515)
.|||..--+..++|=..|+. |+-=++..--.|+|+++++..| .+.|.+||+..-..+.+ ... +.
T Consensus 18 ~~~~~~Eh~~f~~Ak~rLe~~hr~r~~~VmkeW~eaE~~~~~l~~~DPk~Ae~~k~~m~~rFQ~~v~aLE~---e~~~er 94 (193)
T PF12925_consen 18 HPDPENEHQRFKEAKERLEEKHRERMTKVMKEWSEAEERYKELPKADPKKAEQFKKEMTQRFQKTVQALEQ---EAAAER 94 (193)
T ss_dssp SSTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 46777777888888888864 4445566678999999999766 66778888776544322 211 11
Q ss_pred HHHhhhhcccccccHHHHHHhhhhhHHHHHhhhhc
Q 010192 71 LDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR 105 (515)
Q Consensus 71 ~~~l~~re~~i~~~~~~~l~~l~e~~~aa~~s~~~ 105 (515)
.++. ..-.+-...-|.++|.+|+.....
T Consensus 95 ~qL~-------~~H~qRV~a~Lnerkr~al~~y~~ 122 (193)
T PF12925_consen 95 QQLV-------ETHQQRVQAMLNERKRAALENYTA 122 (193)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1221 122233345567888888877544
No 13
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=46.34 E-value=2.3e+02 Score=28.39 Aligned_cols=53 Identities=25% Similarity=0.257 Sum_probs=28.7
Q ss_pred hHHHHHHHhhh--cchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcc
Q 010192 120 LLMILMSYCLK--MEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEV 175 (515)
Q Consensus 120 ~~~~L~~lCe~--MD~~gL~kfi~~~~ke~~~lr~Elp~ALr~ApDPAkLVLdai~~f 175 (515)
++.+|..+|.. -+-.+|+.|+.+ |+..|+..|-..-..=-+---.+++||..+
T Consensus 180 l~~~le~~~~~~~~~~e~f~~~v~~---Ei~~lk~~l~~e~~~R~~~Dd~Iv~aln~y 234 (247)
T PF06705_consen 180 LRSELEEVKRRREKGDEQFQNFVLE---EIAALKNALALESQEREQSDDDIVQALNHY 234 (247)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45566666642 223455555554 566677666444444444445566666554
No 14
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=46.00 E-value=1.3e+02 Score=35.15 Aligned_cols=59 Identities=29% Similarity=0.402 Sum_probs=36.1
Q ss_pred HHHHhhhhhhhhhccchhHHHhhHHHHHHH----------HHHHHHHHHHHHhhhhhhh---hhHHHHhhhh
Q 010192 19 DEFQRQTSLMTSCTLLWKELSDHFTSLEQN----------LQKKSAALRHKIQTLDTQT---KASLDVLKKR 77 (515)
Q Consensus 19 ~eLqs~~s~l~s~tl~W~eL~~HF~sLe~s----------L~~r~e~L~~~~~~~e~~~---~~~~~~l~~r 77 (515)
.|+++.++-|.+....=.||-.|-++|..+ |++.-|+|+.|...+...- +.++..|++|
T Consensus 425 ~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkr 496 (697)
T PF09726_consen 425 ADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKR 496 (697)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555667888887777665 6667777777666553322 3555666665
No 15
>PRK06771 hypothetical protein; Provisional
Probab=45.09 E-value=32 Score=30.36 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=30.3
Q ss_pred hHHHHHhcCCCCC---hhHHHHHHHHcCcchHHHHHHHH
Q 010192 283 MPKLAVSLGLGDK---MPEMIEELISRGQQLDAVHFTYE 318 (515)
Q Consensus 283 ~~eL~~sLGL~~K---mpdiIe~LI~kGk~IeAV~fi~a 318 (515)
.-.++.-+|+.+- +++=|..|+..||.|+||+..++
T Consensus 39 L~~I~~~~Gi~~~~~~~~~e~~~Li~~Gkki~AIK~~Re 77 (93)
T PRK06771 39 LQLITKEMGIVDREPPVNKELRQLMEEGQTVTAVKRVRE 77 (93)
T ss_pred HHHHHHHcCCCCCcccccHHHHHHHHcCCchHHHHHHHH
Confidence 3457788999887 67778899999999999998875
No 16
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.31 E-value=46 Score=35.37 Aligned_cols=23 Identities=17% Similarity=0.416 Sum_probs=12.1
Q ss_pred CCCCCCCCC--CCCCCCCCCCCCCC
Q 010192 462 SPPAVYGSR--SPPYAYSPEAAPPL 484 (515)
Q Consensus 462 ~~~~~y~~~--~~~y~y~~~~~~~~ 484 (515)
+.+++|+++ -++|+..+--++++
T Consensus 42 T~~G~~~~~~~g~s~~~g~~~mN~f 66 (362)
T KOG3875|consen 42 TGPGIYGNSNYGISYVTGHYSMNTF 66 (362)
T ss_pred CCCCccccccCCCccccCCcccccc
Confidence 334444333 23677776666664
No 17
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=43.21 E-value=5.5e+02 Score=29.20 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=43.4
Q ss_pred CCchhHHHHHHHHHHhcCCcccCHHHHHHHhhcccchhhhHHHHHhcCCCC--ChhHHHHHHHHcCcchH
Q 010192 244 VKTPDVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGD--KMPEMIEELISRGQQLD 311 (515)
Q Consensus 244 ~~~lea~gFLqlLa~fGI~seFd~del~~Lv~~va~rkq~~eL~~sLGL~~--KmpdiIe~LI~kGk~Ie 311 (515)
++..+|+..|+-+.+|| -..-+.+++.+++. ........+|+.+++-.+ ++-++++.|++.|+.+.
T Consensus 212 G~~R~al~~Ldq~~~~~-~~~It~~~V~~vlg-~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~ 279 (559)
T PRK05563 212 GGMRDALSILDQAISFG-DGKVTYEDALEVTG-SVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPN 279 (559)
T ss_pred CCHHHHHHHHHHHHHhc-cCCCCHHHHHHHhC-CCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHH
Confidence 34568999998888897 44566777776653 333445566776665443 45677778888777553
No 18
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=43.06 E-value=47 Score=31.67 Aligned_cols=9 Identities=33% Similarity=0.722 Sum_probs=4.8
Q ss_pred CCCCCCCCC
Q 010192 490 GAPMNYPAY 498 (515)
Q Consensus 490 ~~~~~~~~~ 498 (515)
+||+.||++
T Consensus 144 spPppYpg~ 152 (155)
T PF10873_consen 144 SPPPPYPGN 152 (155)
T ss_pred CCccCCCCC
Confidence 355556654
No 19
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=42.20 E-value=82 Score=32.49 Aligned_cols=22 Identities=45% Similarity=0.749 Sum_probs=16.1
Q ss_pred ccCCCC-CCCccCcccCCCCCCC
Q 010192 402 KKKPAA-VPATKRTRASNGGPMP 423 (515)
Q Consensus 402 kKr~~~-~~~~KR~R~s~g~~~p 423 (515)
+++++. +++.||.|.-+|.+|+
T Consensus 90 ~r~~~de~~~ekr~~~d~~~~~~ 112 (341)
T KOG2893|consen 90 YRGAADEEPDEKRSRMDNGPPMP 112 (341)
T ss_pred hhhhhhcCchhhhhcccCCCCCC
Confidence 344443 6788999998987777
No 20
>KOG2236 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.17 E-value=79 Score=35.22 Aligned_cols=12 Identities=42% Similarity=1.032 Sum_probs=6.4
Q ss_pred CCCCCCCCCCCC
Q 010192 461 ASPPAVYGSRSP 472 (515)
Q Consensus 461 p~~~~~y~~~~~ 472 (515)
+.|++.||..+|
T Consensus 436 ~~p~~~~g~~~P 447 (483)
T KOG2236|consen 436 SNPPANFGQANP 447 (483)
T ss_pred CCCcccccccCc
Confidence 344555555555
No 21
>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]
Probab=39.24 E-value=1e+02 Score=36.19 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=6.8
Q ss_pred CCCCCccccCCCC
Q 010192 438 FPAPPTFVRSPSH 450 (515)
Q Consensus 438 ~~~~~~~~~~~~~ 450 (515)
|+.|++.+|....
T Consensus 197 ~~~~pp~vr~~~P 209 (1034)
T KOG0608|consen 197 FRSPPPMVRNGNP 209 (1034)
T ss_pred CCCCcccccCCCC
Confidence 3445666666433
No 22
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=39.17 E-value=1.3e+02 Score=25.73 Aligned_cols=53 Identities=9% Similarity=0.116 Sum_probs=37.4
Q ss_pred hhhhchHHHHHHHhhhhhh-hhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 010192 10 LSELNPLSFDEFQRQTSLM-TSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQT 62 (515)
Q Consensus 10 ~~e~l~kaF~eLqs~~s~l-~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~~~~ 62 (515)
+.+.+..+...|+.....+ .++.-.+.++..+|..|.+.|..|=..|-++...
T Consensus 15 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~ 68 (127)
T smart00502 15 KAAELEDALKQLISIIQEVEENAADVEAQIKAAFDELRNALNKRKKQLLEDLEE 68 (127)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665555 4677888889999999988888887777655543
No 23
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=36.82 E-value=1.6e+02 Score=31.57 Aligned_cols=114 Identities=16% Similarity=0.179 Sum_probs=64.5
Q ss_pred HhhhcchHHHHHHHHhhhchhHHHHhhHHHHhhcCCChhhHHHHHhhcccCCCCCCCCCCchhh--------HHHHHHHH
Q 010192 127 YCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDPAKFVMEAISEVFPVDKRSDKSGNDLG--------WACVLVLE 198 (515)
Q Consensus 127 lCe~MD~~gL~kfi~~~~ke~~~lr~Elp~ALr~ApDPAkLVLdai~~fy~~~~~~~~~~~~~~--------~aCilLLE 198 (515)
|..+|-+-.|-.=+.+-.|.+..++..+. -..-++++|..|.-.+.. ..+ ..| -.++.+|+
T Consensus 96 LlQrifs~~L~~d~~~~~k~i~~le~~i~--------~~~~~~~~ik~~v~~~~~-~~~--~ir~~s~~~~~~iv~~IL~ 164 (341)
T PF12825_consen 96 LLQRIFSMVLNDDIKEFEKEIDKLEKKIG--------DSPEMCEKIKAFVYAPRE-EKD--EIREESEEENEDIVVAILR 164 (341)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhc--------CHHHHHHHHHHHHcCCHH-HHH--HHHHHHHHcCCCchHHHHh
Confidence 44444444444333344445555555443 288999999998753321 111 111 12455555
Q ss_pred hhcccccCccccccCCCCChhHHHHHHHHHHHHHHHhhhccCCCCCCchhHHHHHHHHHHhcC
Q 010192 199 SLIPVMVDPVIGKMRMLVTPSVKEKAKEIAERWKASLEERGGIENVKTPDVHTFLQLLVTFGI 261 (515)
Q Consensus 199 ~L~~~l~~p~~G~~~p~vs~~vkeeAk~lA~~WK~kl~~~g~~~~~~~lea~gFLqlLa~fGI 261 (515)
..- ..|.+++...++-..--..|+..+.......+...-+|+-|.++---+.+
T Consensus 165 ~~~----------~~p~L~~~~~~~v~~sy~~~~~~~~~~~~~~~~~~~~a~lf~~lk~yl~l 217 (341)
T PF12825_consen 165 SSD----------IEPKLSPEQLQRVLESYKAWKNAVESVPDDDGEENEDAWLFSDLKEYLKL 217 (341)
T ss_pred CCC----------CCCCCCHHHHHHHHHHHHHHHHhhhccccCCCccchhhHHHHHHHHHHHH
Confidence 331 13678888888888888999998854322233345678888766554444
No 24
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.66 E-value=40 Score=37.80 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhcCCcccCHHHHHHHhhccc-----chhhhHHHHHhcCCCCChhHHHHHHHHcCcchHHHHHHHHhcCCC
Q 010192 249 VHTFLQLLVTFGIVKKEDVDLYRKLVVGSA-----WRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVD 323 (515)
Q Consensus 249 a~gFLqlLa~fGI~seFd~del~~Lv~~va-----~rkq~~eL~~sLGL~~KmpdiIe~LI~kGk~IeAV~fi~aF~L~d 323 (515)
-..-|..+.+|-|.++ ..++..+++..+ -|+-+-+..+.|.+ --|+|+.|+.+|++|+|+|||.--+=+|
T Consensus 527 ~F~~L~~f~~y~il~~--SK~VAc~LLs~~~~~~~~~ql~lDML~rlsa---H~~iIevll~~G~vl~ALR~A~~~~g~~ 601 (657)
T KOG2377|consen 527 LFYMLHQFLQYHVLSD--SKPVACLLLSLESFYPPAHQLSLDMLKRLSA---HDEIIEVLLSKGQVLAALRFARGIGGHD 601 (657)
T ss_pred hHHHHHHHHhhhhccC--CcceeEEEecccCcCccHHHHhHHHHhhhhh---hHHHHHHHHcCchHHHHHHHHhhccCcc
Confidence 3455677778887763 333222222222 22223333333333 3489999999999999999999666666
Q ss_pred CCCChHHHHHHHHHHHH
Q 010192 324 KFPPVPLLKAFLKDAKK 340 (515)
Q Consensus 324 kFpPvpLLKsyl~~akk 340 (515)
+-+-- -||+-|++
T Consensus 602 ~V~ar----kFLEAA~~ 614 (657)
T KOG2377|consen 602 NVSAR----KFLEAAKQ 614 (657)
T ss_pred cccHH----HHHHHHhc
Confidence 55432 25544443
No 25
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=32.77 E-value=2.2e+02 Score=27.05 Aligned_cols=50 Identities=14% Similarity=0.257 Sum_probs=23.9
Q ss_pred hchHHHHHHHhhhhhhhhhccchhHHHhhHHHHH---HHHHHHHHHHHHHHhhhhh
Q 010192 13 LNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLE---QNLQKKSAALRHKIQTLDT 65 (515)
Q Consensus 13 ~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe---~sL~~r~e~L~~~~~~~e~ 65 (515)
++++-+++++.+... ..-.+.++.+-+..++ ++...|.+.+++..+.+..
T Consensus 92 ~l~~el~~l~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~ 144 (191)
T PF04156_consen 92 QLQEELDQLQERIQE---LESELEKLKEDLQELRELLKSVEERLDSLDESIKELEK 144 (191)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555443 4444555555554444 4444444444444444433
No 26
>PF08711 Med26: TFIIS helical bundle-like domain; InterPro: IPR017923 Transcription factor IIS (TFIIS) is a transcription elongation factor that increases the overall transcription rate of RNA polymerase II by reactivating transcription elongation complexes that have arrested transcription. The three structural domains of TFIIS are conserved from yeast to human. The 80 or so N-terminal residues form a protein interaction domain containing a conserved motif, which has been called the LW motif because of the invariant leucine and tryptophan residues it contains. Although the N-terminal domain is not needed for transcriptional activity, a similar sequence has been identified in other transcription factors and proteins that are predominantly nuclear localized [, ]: MED26 (also known as CRSP70 and ARC70), a subunit of the Mediator complex, which is required for the activity of the enhancer-binding protein Sp1. Elongin A, a subunit of a transcription elongation factor previously known as SIII. It increases the rate of transcription by suppressing transient pausing of the elongation complex. PPP1R10, a nuclear regulatory subunit of protein phosphatase 1 that was previously known as p99, FB19 or PNUTS. PIBP, a small hypothetical protein that could be a phosphoinositide binding protein. IWS1, which is thought to function in both transcription initiation and elongation. The TFIIS N-terminal domain is a compact four-helix bundle. The hydrophobic core residues of helices 2, 3, and 4 are well conserved among TFIIS domains, although helix 1 is less conserved []. ; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent, 0005634 nucleus; PDB: 1EO0_A 3OAK_A 3NFQ_B 3O8Z_A 1WJT_A 2XPL_A 2XPO_A 2XPP_A 2XPN_A.
Probab=31.52 E-value=51 Score=25.16 Aligned_cols=21 Identities=29% Similarity=0.729 Sum_probs=17.5
Q ss_pred CChhHHHHHHHHHHHHHHHhh
Q 010192 216 VTPSVKEKAKEIAERWKASLE 236 (515)
Q Consensus 216 vs~~vkeeAk~lA~~WK~kl~ 236 (515)
-++++++.|+.|-..||..++
T Consensus 33 ~~~~i~~~A~~Li~~Wk~~v~ 53 (53)
T PF08711_consen 33 ENPEIRKLAKELIKKWKRIVD 53 (53)
T ss_dssp S-HHHHHHHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHhHhcC
Confidence 568999999999999999863
No 27
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=30.93 E-value=2e+02 Score=26.83 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=33.2
Q ss_pred HHHhhhhhhhhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhcc
Q 010192 20 EFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREV 79 (515)
Q Consensus 20 eLqs~~s~l~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~~~~~e~~~~~~~~~l~~re~ 79 (515)
+|+.-..-|....-.-.+-+.|++..| +|.+|...|+......+.+-.++..-|+.-+.
T Consensus 50 eld~~~~~l~~~k~~lee~~~~~~~~E-~l~rriq~LEeele~ae~~L~e~~ekl~e~d~ 108 (143)
T PF12718_consen 50 ELDKLEEQLKEAKEKLEESEKRKSNAE-QLNRRIQLLEEELEEAEKKLKETTEKLREADV 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhHH-HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333334445555566666666666 67777777766666666555555555443333
No 28
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=30.87 E-value=92 Score=24.88 Aligned_cols=33 Identities=15% Similarity=0.462 Sum_probs=28.0
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010192 34 LWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQ 66 (515)
Q Consensus 34 ~W~eL~~HF~sLe~sL~~r~e~L~~~~~~~e~~ 66 (515)
.-.+++++|..+-..|-.|.++...++-.+|..
T Consensus 11 lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~s 43 (54)
T PF06825_consen 11 LLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKS 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 347889999999999999999998888887754
No 29
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=30.10 E-value=2.8e+02 Score=28.67 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=30.6
Q ss_pred HhhcccchhhhHHHHHhcCCCCChhHHHHHHHHcCcchHHHHHHHHhc
Q 010192 273 LVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVG 320 (515)
Q Consensus 273 Lv~~va~rkq~~eL~~sLGL~~KmpdiIe~LI~kGk~IeAV~fi~aF~ 320 (515)
+.+.+++.+....++..+|+.+...+.|-.++.+......-.++...+
T Consensus 145 ~~i~l~~~~il~~il~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 192 (314)
T TIGR00443 145 FKIELGHVGLVRALLEEAGLPEEAREALREALARKDLVALEELLAELG 192 (314)
T ss_pred eEEEeCcHHHHHHHHHHcCCCHHHHHHHHHHHHhcCHHHHHHHHHhcC
Confidence 345567777777777788887776666667777666655444444333
No 30
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=29.52 E-value=1.3e+02 Score=31.89 Aligned_cols=127 Identities=19% Similarity=0.293 Sum_probs=77.4
Q ss_pred hchHHHHHHH-------hhhhhh-hhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHhhhhccccccc
Q 010192 13 LNPLSFDEFQ-------RQTSLM-TSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLDVLKKREVTIDGS 84 (515)
Q Consensus 13 ~l~kaF~eLq-------s~~s~l-~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~~~~~e~~~~~~~~~l~~re~~i~~~ 84 (515)
.|.|+.-||| +++.+| .-|..+-+.+..-|..|++-|.-|--.| ..++|....+++++|..|+..+.
T Consensus 154 nIEKSvKDLqRctvSL~RYr~~lkee~d~S~k~ik~~F~~l~~cL~dREvaL---l~EmdkVK~EAmeiL~aRqkkAe-- 228 (302)
T PF07139_consen 154 NIEKSVKDLQRCTVSLTRYRVVLKEEMDSSIKKIKQTFAELQSCLMDREVAL---LAEMDKVKAEAMEILDARQKKAE-- 228 (302)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH--
Confidence 4455555555 455555 4677788899999999999998888777 45667777789999988866432
Q ss_pred HHHHHHhhhhhHHHHHhhhhccCCCCCCCCCCCcchHHHHHHHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhhcCCCh
Q 010192 85 VEIAMEKLEDRTEATLNSISRGQELGDGEVDDGDGLLMILMSYCLKMEARGFWKFVVTKKKEIEELRNALPAALSECVDP 164 (515)
Q Consensus 85 ~~~~l~~l~e~~~aa~~s~~~~~~~~~~~v~~~~~~~~~L~~lCe~MD~~gL~kfi~~~~ke~~~lr~Elp~ALr~ApDP 164 (515)
.|.|+- |-|.. +++ .+|..|= .-+.-||.++.-| +||--|.|..=|+
T Consensus 229 ---eLkrlt---d~A~~-MsE----------------~Ql~ELR-----adIK~fvs~rk~d-----e~lg~~~rf~~d~ 275 (302)
T PF07139_consen 229 ---ELKRLT---DRASQ-MSE----------------EQLAELR-----ADIKHFVSERKYD-----EELGRAARFTCDP 275 (302)
T ss_pred ---HHHHHH---HHHhh-cCH----------------HHHHHHH-----HHHHHHhhhhhhH-----HHHhHhhhcccCH
Confidence 123321 11111 111 2222221 1234577776544 7888888888887
Q ss_pred hhH--HHHHhhcccC
Q 010192 165 AKF--VMEAISEVFP 177 (515)
Q Consensus 165 AkL--VLdai~~fy~ 177 (515)
-.| +++..+.+++
T Consensus 276 ~~l~~~i~~~g~v~~ 290 (302)
T PF07139_consen 276 EQLKKSIMSFGEVSH 290 (302)
T ss_pred HHHHHHHHhcCcccc
Confidence 665 3444444454
No 31
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=28.70 E-value=86 Score=32.98 Aligned_cols=51 Identities=24% Similarity=0.532 Sum_probs=43.0
Q ss_pred hhHHHHHHHHcCcchHHHHHH-HHhcCCCCCCChHHHHHHHHHHHHHHHHHh
Q 010192 296 MPEMIEELISRGQQLDAVHFT-YEVGLVDKFPPVPLLKAFLKDAKKAAVSIL 346 (515)
Q Consensus 296 mpdiIe~LI~kGk~IeAV~fi-~aF~L~dkFpPvpLLKsyl~~akk~~~~~~ 346 (515)
+|.+++.+|.+|.|=+|+.|. |.=.|..+||-+++.++-..++....+.+.
T Consensus 109 lP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~ml 160 (338)
T PF04124_consen 109 LPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQML 160 (338)
T ss_pred hHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHH
Confidence 577788999999999999985 455799999999999999998877666544
No 32
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=28.17 E-value=4.3e+02 Score=31.56 Aligned_cols=17 Identities=18% Similarity=0.038 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHh
Q 010192 360 ARKEQSALRAVIKCIED 376 (515)
Q Consensus 360 ~~kEl~aLksViKcIEd 376 (515)
-..|++-|.-..+|.|+
T Consensus 215 ~~dels~m~k~~~~~e~ 231 (830)
T KOG1923|consen 215 LLDELSCMQKLSIEKER 231 (830)
T ss_pred hcchhHHHHHHHHHHHH
Confidence 33466666665555554
No 33
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=27.87 E-value=2.6e+02 Score=28.71 Aligned_cols=17 Identities=18% Similarity=0.335 Sum_probs=14.2
Q ss_pred hhHHHHHHHHHHHhhhh
Q 010192 385 PENLKKRLEQLEKAKTE 401 (515)
Q Consensus 385 ~~~L~krI~qLEK~k~e 401 (515)
++.++.||.+||.+...
T Consensus 57 L~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 57 LKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 56899999999998753
No 34
>COG5498 ACF2 Predicted glycosyl hydrolase [Cell envelope biogenesis, outer membrane]
Probab=27.47 E-value=1e+02 Score=35.64 Aligned_cols=70 Identities=23% Similarity=0.398 Sum_probs=42.0
Q ss_pred ccccCCCCCCCCCCCC--CC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCC-----CCCccccc
Q 010192 443 TFVRSPSHTQYPAGVT--AY--ASPPAVYGSRSPPYAYSPEAAPPLAGSYPGAPMNYPAYGG--YGN-----GLAPAYQQ 511 (515)
Q Consensus 443 ~~~~~~~~~~~~~~~p--~y--p~~~~~y~~~~~~y~y~~~~~~~~~~~y~~~~~~~~~~~~--y~~-----~~~~~~~~ 511 (515)
-|...++-++|...+| +| +.||..+|.-+||+.|+-..++.....|.+-+ +-|-+++ ||| -..|+|-.
T Consensus 33 ~f~tg~s~s~~s~S~~~~d~~v~~~pi~~~~inp~~~F~s~qhpvpp~~v~s~s-~~PiqTNkfy~nl~vg~~t~p~~~h 111 (760)
T COG5498 33 LFPTGASASPHSVSVPKGDSNVEFPPILSGTINPPSTFRSVQHPVPPPGVRSDS-TGPIQTNKFYGNLLVGSRTNPQYPH 111 (760)
T ss_pred ccccCcccCccccccCCCcccccCCchhcCCCCCccccccccCCCCCCccccCC-CCcceecchhhceeeccccCCCCCC
Confidence 3555555556666666 33 45677778888888777765544333344333 5566777 777 33677766
Q ss_pred cc
Q 010192 512 AY 513 (515)
Q Consensus 512 ~y 513 (515)
||
T Consensus 112 Py 113 (760)
T COG5498 112 PY 113 (760)
T ss_pred Ce
Confidence 65
No 35
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=26.40 E-value=1.5e+02 Score=27.53 Aligned_cols=38 Identities=21% Similarity=0.455 Sum_probs=4.4
Q ss_pred CCCCCchhhhhchHHHHHHHhhhhhhhhhccchhHHHhhHHHHH
Q 010192 3 SIPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLE 46 (515)
Q Consensus 3 ~~~~~~~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe 46 (515)
.-|||+.+.--.=..|+||... .+.|=.++..|-..|+
T Consensus 17 ~nPdP~~~~Pv~i~GF~dL~~R------~~~Q~~~~~~~~~~l~ 54 (141)
T PF13874_consen 17 DNPDPSRLIPVPIIGFEDLKKR------VEAQEEEIAQHRERLK 54 (141)
T ss_dssp -----------------------------------HHHHHHHHH
T ss_pred HCcCCcCeeeehhhhHHHHHHH------HHHHHHHHHHHHHHHH
Confidence 3599988888888999998654 2344445555544444
No 36
>PHA02086 hypothetical protein
Probab=25.81 E-value=70 Score=27.27 Aligned_cols=35 Identities=31% Similarity=0.590 Sum_probs=26.5
Q ss_pred HHhhcccchhhhHHHHHhcCCCC-------ChhHHHHHHHHcC
Q 010192 272 KLVVGSAWRKQMPKLAVSLGLGD-------KMPEMIEELISRG 307 (515)
Q Consensus 272 ~Lv~~va~rkq~~eL~~sLGL~~-------KmpdiIe~LI~kG 307 (515)
+|-...|.||.+-.||. +|+++ .+|.||.+||.+=
T Consensus 41 ~~~~g~asr~~~g~lc~-~g~vheanl~g~~~~~ii~~m~~~m 82 (88)
T PHA02086 41 RLRIGQASRRDMGVLCA-SGIVHEANLFGANIPNVIDEMIEKM 82 (88)
T ss_pred HHHHhhhhHHHHHHHHH-hhhhhhhhhcccchhHHHHHHHHHH
Confidence 44466788999999985 57665 4799999998763
No 37
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=24.98 E-value=1.2e+02 Score=28.88 Aligned_cols=42 Identities=40% Similarity=0.808 Sum_probs=21.7
Q ss_pred ccCCCCC-CCccccCCCCCC-CCCCC-CCC-CCCCCCCCCCCCCCCCCC
Q 010192 434 YVSSFPA-PPTFVRSPSHTQ-YPAGV-TAY-ASPPAVYGSRSPPYAYSP 478 (515)
Q Consensus 434 ~~~s~~~-~~~~~~~~~~~~-~~~~~-p~y-p~~~~~y~~~~~~y~y~~ 478 (515)
.++|+|+ ||++.- +|++ |+... |+| |.+ ..+.+++||-.|+.
T Consensus 106 ~v~SyP~apPpysy--~~e~~~~~d~PPpYsp~~-~~~~~~spPppYpg 151 (155)
T PF10873_consen 106 AVSSYPAAPPPYSY--DHEMEYPPDLPPPYSPTP-QQSAQRSPPPPYPG 151 (155)
T ss_pred cccccCCCCCCccc--cccccccCCCCcCCCCcc-cccccCCCccCCCC
Confidence 4557773 444433 2332 44444 478 543 44677777555543
No 38
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=24.92 E-value=2.9e+02 Score=29.83 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=24.4
Q ss_pred hhhhhhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010192 25 TSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTLDTQ 66 (515)
Q Consensus 25 ~s~l~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~~~~~e~~ 66 (515)
+.+..++.-.+.+...|...|++.+.+-.+.+.++++.+.++
T Consensus 226 ~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~q 267 (359)
T PF10498_consen 226 KQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQ 267 (359)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555566666666666666666666666666555433
No 39
>KOG3088 consensus Secretory carrier membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.71 E-value=43 Score=35.22 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=14.1
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhh
Q 010192 39 SDHFTSLEQNLQKKSAALRHKIQTLD 64 (515)
Q Consensus 39 ~~HF~sLe~sL~~r~e~L~~~~~~~e 64 (515)
++| +..-+.++++-.+|+.|+++|+
T Consensus 53 ~~~-~~~a~~~~~kq~eL~~rqeEL~ 77 (313)
T KOG3088|consen 53 DSP-STQAKDLAKKQAELLKKQEELR 77 (313)
T ss_pred CCC-cchhhHHHHHHHHHHHHHHHHH
Confidence 344 5555566666666666655553
No 40
>KOG0844 consensus Transcription factor EVX1, contains HOX domain [Transcription]
Probab=22.33 E-value=40 Score=35.75 Aligned_cols=12 Identities=25% Similarity=0.443 Sum_probs=9.3
Q ss_pred HHHHHHHHHHhh
Q 010192 388 LKKRLEQLEKAK 399 (515)
Q Consensus 388 L~krI~qLEK~k 399 (515)
-+++|..|||+=
T Consensus 189 TReQIaRLEKEF 200 (408)
T KOG0844|consen 189 TREQIARLEKEF 200 (408)
T ss_pred hHHHHHHHHHHH
Confidence 467889999974
No 41
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=21.51 E-value=5.4e+02 Score=22.28 Aligned_cols=15 Identities=20% Similarity=0.406 Sum_probs=6.9
Q ss_pred HhhhhhHHHHHhhhh
Q 010192 90 EKLEDRTEATLNSIS 104 (515)
Q Consensus 90 ~~l~e~~~aa~~s~~ 104 (515)
..++++|...+..+.
T Consensus 54 ~~le~~r~~~~~~~~ 68 (143)
T PF05130_consen 54 RELEKQRQQLLAKLG 68 (143)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 444445544444443
No 42
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=21.30 E-value=1.2e+03 Score=26.24 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=17.7
Q ss_pred CCCChhHHHHHHHHHHHhhhh
Q 010192 381 GEFPPENLKKRLEQLEKAKTE 401 (515)
Q Consensus 381 se~p~~~L~krI~qLEK~k~e 401 (515)
.+-+.+.|-+||..|||..+.
T Consensus 356 ~~~~~~~~~~r~~~le~~~~~ 376 (504)
T PRK14963 356 PAPAPADLTQRLNRLEKEVRS 376 (504)
T ss_pred cCCCHHHHHHHHHHHHHHhcc
Confidence 466779999999999997774
No 43
>PRK12704 phosphodiesterase; Provisional
Probab=20.90 E-value=3.6e+02 Score=30.51 Aligned_cols=31 Identities=26% Similarity=0.474 Sum_probs=16.8
Q ss_pred hHHHhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010192 36 KELSDHFTSLEQNLQKKSAALRHKIQTLDTQ 66 (515)
Q Consensus 36 ~eL~~HF~sLe~sL~~r~e~L~~~~~~~e~~ 66 (515)
++-+......|+.|.+|-+.|+.+.+.++.+
T Consensus 78 ~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekk 108 (520)
T PRK12704 78 RERRNELQKLEKRLLQKEENLDRKLELLEKR 108 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335555555556666666655555555443
No 44
>PF11914 DUF3432: Domain of unknown function (DUF3432); InterPro: IPR021839 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 100 amino acids in length. This domain is found associated with PF00096 from PFAM. This domain has two conserved sequence motifs: YPSPV and PSP.
Probab=20.76 E-value=1.6e+02 Score=26.11 Aligned_cols=19 Identities=21% Similarity=0.483 Sum_probs=13.0
Q ss_pred CCCCCCCCCCCCCCCCCCC
Q 010192 481 APPLAGSYPGAPMNYPAYG 499 (515)
Q Consensus 481 ~~~~~~~y~~~~~~~~~~~ 499 (515)
-++++-.|++.+-+||.|.
T Consensus 58 SPsvAtTy~S~~~aF~tqv 76 (99)
T PF11914_consen 58 SPSVATTYPSVTPAFQTQV 76 (99)
T ss_pred CcceeeeccCCCccccccc
Confidence 3447777777777777665
No 45
>PHA01750 hypothetical protein
Probab=20.11 E-value=2.6e+02 Score=23.47 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=26.2
Q ss_pred HhhHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhc
Q 010192 355 AAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAKTEK 402 (515)
Q Consensus 355 a~~eA~~kEl~aLksViKcIEd~KLese~p~~~L~krI~qLEK~k~ek 402 (515)
|..+.-.+|+..|+.-|.-+. .-.|.|+++|.++.| |-+|
T Consensus 35 AvkeIV~~ELdNL~~ei~~~k-------ikqDnl~~qv~eik~-k~dk 74 (75)
T PHA01750 35 AVKEIVNSELDNLKTEIEELK-------IKQDELSRQVEEIKR-KLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHH-hhcc
Confidence 467778889998887655443 234567888887744 4443
Done!