Query 010192
Match_columns 515
No_of_seqs 140 out of 161
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 21:54:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkq_B Coatomer subunit alpha; 43.1 36 0.0012 31.8 5.8 58 266-323 75-132 (177)
2 4h22_A Leucine-rich repeat fli 38.4 1.1E+02 0.0036 26.4 7.5 82 9-90 6-97 (103)
3 1p16_C Phosphorylated peptide 37.6 23 0.00079 23.3 2.5 6 467-472 15-20 (26)
4 2z73_A Rhodopsin; visual pigme 37.0 7.2 0.00025 39.1 0.0 9 364-372 323-331 (448)
5 3h0g_A DNA-directed RNA polyme 36.6 7.4 0.00025 47.9 0.0 19 10-28 927-945 (1752)
6 3ljm_A Coil Ser L9C; de novo d 34.2 45 0.0015 22.2 3.5 17 49-65 6-22 (31)
7 3swy_A Cyclic nucleotide-gated 31.7 1E+02 0.0035 22.8 5.5 41 9-59 5-45 (46)
8 3ci9_A Heat shock factor-bindi 31.4 59 0.002 24.3 4.2 32 34-65 14-45 (48)
9 3pmr_A Amyloid-like protein 1; 30.4 1.8E+02 0.006 28.2 8.5 93 4-105 20-117 (219)
10 3swf_A CGMP-gated cation chann 30.2 82 0.0028 25.6 5.2 45 8-62 6-50 (74)
11 3k66_A Beta-amyloid-like prote 28.9 1.7E+02 0.0057 28.7 8.0 92 4-105 8-112 (239)
12 1m1j_B Fibrinogen beta chain; 28.1 3.1E+02 0.011 29.2 10.7 47 37-83 86-139 (464)
13 3fx7_A Putative uncharacterize 25.8 1.1E+02 0.0037 25.9 5.4 64 4-74 5-75 (94)
14 3umh_A Amyloid beta A4 protein 24.2 2.2E+02 0.0076 27.3 7.9 93 4-105 13-110 (211)
15 2xus_A Breast cancer metastasi 24.0 94 0.0032 23.4 4.1 33 31-63 11-44 (49)
16 3k1h_A HP1076, putative unchar 23.5 41 0.0014 30.9 2.6 47 126-177 103-153 (158)
17 1twf_A B220, DNA-directed RNA 20.6 21 0.00072 44.0 0.0 7 162-168 1058-1064(1733)
18 3igm_B PF14_0633 protein; AP2 20.4 58 0.002 26.7 2.5 20 221-240 44-63 (77)
No 1
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=43.14 E-value=36 Score=31.75 Aligned_cols=58 Identities=14% Similarity=0.023 Sum_probs=41.0
Q ss_pred CHHHHHHHhhcccchhhhHHHHHhcCCCCChhHHHHHHHHcCcchHHHHHHHHhcCCC
Q 010192 266 DVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQQLDAVHFTYEVGLVD 323 (515)
Q Consensus 266 d~del~~Lv~~va~rkq~~eL~~sLGL~~KmpdiIe~LI~kGk~IeAV~fi~aF~L~d 323 (515)
|.+.+.++.-....+++.---+...-+...+-+-|+-|++.|+.-+|+-|+.++|+.+
T Consensus 75 ~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~ 132 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEA 132 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHH
Confidence 4466665543333444444444555566788899999999999999999999988743
No 2
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=38.38 E-value=1.1e+02 Score=26.44 Aligned_cols=82 Identities=15% Similarity=0.221 Sum_probs=50.1
Q ss_pred hhhhhchHH---HHHHHhhhhhh----hhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhhh---hhhhhhHHHHhhhhc
Q 010192 9 ELSELNPLS---FDEFQRQTSLM----TSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQTL---DTQTKASLDVLKKRE 78 (515)
Q Consensus 9 ~~~e~l~ka---F~eLqs~~s~l----~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~~~~~---e~~~~~~~~~l~~re 78 (515)
++-|..+|| .+.|..-++.| -.+...-.|+++.|..+.+.+..+..+++..-.+. ..+.......|++|+
T Consensus 6 EvEEKyrKAMVsnAQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD 85 (103)
T 4h22_A 6 EVEEKYKKAMVSNAQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQRE 85 (103)
T ss_dssp --CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566665 46777777766 25567778888999999988888877776555443 333345667888998
Q ss_pred ccccccHHHHHH
Q 010192 79 VTIDGSVEIAME 90 (515)
Q Consensus 79 ~~i~~~~~~~l~ 90 (515)
.=|..++..+|.
T Consensus 86 ~LI~E~~~~~~~ 97 (103)
T 4h22_A 86 EMLEPKLAAALE 97 (103)
T ss_dssp SCC---------
T ss_pred HHHHHHHHHHHH
Confidence 888877665554
No 3
>1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans}
Probab=37.57 E-value=23 Score=23.35 Aligned_cols=6 Identities=50% Similarity=1.010 Sum_probs=2.6
Q ss_pred CCCCCC
Q 010192 467 YGSRSP 472 (515)
Q Consensus 467 y~~~~~ 472 (515)
|+-.||
T Consensus 15 YsPtSp 20 (26)
T 1p16_C 15 YSPTSP 20 (26)
T ss_pred CCCCCc
Confidence 344444
No 4
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=37.01 E-value=7.2 Score=39.14 Aligned_cols=9 Identities=11% Similarity=0.257 Sum_probs=4.5
Q ss_pred HHHHHHHHH
Q 010192 364 QSALRAVIK 372 (515)
Q Consensus 364 l~aLksViK 372 (515)
..+++.+++
T Consensus 323 R~~~~~~~~ 331 (448)
T 2z73_A 323 REAISQTFP 331 (448)
T ss_dssp HHHHHHHCG
T ss_pred HHHHHHHHH
Confidence 345555554
No 5
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=36.57 E-value=7.4 Score=47.89 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=10.5
Q ss_pred hhhhchHHHHHHHhhhhhh
Q 010192 10 LSELNPLSFDEFQRQTSLM 28 (515)
Q Consensus 10 ~~e~l~kaF~eLqs~~s~l 28 (515)
++..|.+-|+.|...+..|
T Consensus 927 ~~~~l~~E~~~l~~dr~~l 945 (1752)
T 3h0g_A 927 VQDLLDEEYTQLVADRELL 945 (1752)
T ss_dssp STHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445555666666555544
No 6
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=34.20 E-value=45 Score=22.23 Aligned_cols=17 Identities=53% Similarity=0.731 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhhhhh
Q 010192 49 LQKKSAALRHKIQTLDT 65 (515)
Q Consensus 49 L~~r~e~L~~~~~~~e~ 65 (515)
|.+++..|++|.+++|.
T Consensus 6 lekkcaalesklqalek 22 (31)
T 3ljm_A 6 LEKKCAALESKLQALEK 22 (31)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556666666665553
No 7
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=31.72 E-value=1e+02 Score=22.84 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=29.7
Q ss_pred hhhhhchHHHHHHHhhhhhhhhhccchhHHHhhHHHHHHHHHHHHHHHHHH
Q 010192 9 ELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHK 59 (515)
Q Consensus 9 ~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~ 59 (515)
++.++|.-..+.||.. +..|-.-|++-++-|++|...|+.+
T Consensus 5 ekv~~Le~~ld~LqTr----------~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTR----------FARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4556666666665543 5567888999999999999988653
No 8
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=31.36 E-value=59 Score=24.30 Aligned_cols=32 Identities=16% Similarity=0.468 Sum_probs=26.5
Q ss_pred chhHHHhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 010192 34 LWKELSDHFTSLEQNLQKKSAALRHKIQTLDT 65 (515)
Q Consensus 34 ~W~eL~~HF~sLe~sL~~r~e~L~~~~~~~e~ 65 (515)
.-.++++||..+-..|-.|.++...++-+||.
T Consensus 14 LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~ 45 (48)
T 3ci9_A 14 LLQQMQDKFQTISDQIIGRIDDMSSRIDDLEK 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Confidence 35788899999999999999999888877764
No 9
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=30.44 E-value=1.8e+02 Score=28.18 Aligned_cols=93 Identities=14% Similarity=0.188 Sum_probs=54.1
Q ss_pred CCCCchhhhhchHHHHHHHh-hhhhhhhhccchhHHHhhHHHHHHH----HHHHHHHHHHHHhhhhhhhhhHHHHhhhhc
Q 010192 4 IPDPGELSELNPLSFDEFQR-QTSLMTSCTLLWKELSDHFTSLEQN----LQKKSAALRHKIQTLDTQTKASLDVLKKRE 78 (515)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs-~~s~l~s~tl~W~eL~~HF~sLe~s----L~~r~e~L~~~~~~~e~~~~~~~~~l~~re 78 (515)
.|++..--+..++|=..|+. |+.=++..-..|+|+++++..|.+. |..||++.- +++|.... .+|+
T Consensus 20 ~~~~~~EH~~f~~Ak~rLe~~hr~k~~~VmkEW~eae~q~k~lpkadkk~m~~rFQ~~v---~aLE~E~~------~Erq 90 (219)
T 3pmr_A 20 MPGEISEHEGFLRAKMDLEERRMRQINEVMREWAMADNQSKNLPKADRQALNEHFQSIL---QTLEEQVS------GERQ 90 (219)
T ss_dssp SCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHH---HHHHHHHH------HHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH---HHHhhhhH------HHHH
Confidence 56666666677788777764 4444566779999999999887654 455555443 23332221 1122
Q ss_pred ccccccHHHHHHhhhhhHHHHHhhhhc
Q 010192 79 VTIDGSVEIAMEKLEDRTEATLNSISR 105 (515)
Q Consensus 79 ~~i~~~~~~~l~~l~e~~~aa~~s~~~ 105 (515)
.-+..-.+....-|.++|..|+...-.
T Consensus 91 qL~etH~~RV~a~Ln~rrr~Ale~y~~ 117 (219)
T 3pmr_A 91 RLVETHATRVIALINDQRRAALEGFLA 117 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223334456788888887544
No 10
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.22 E-value=82 Score=25.61 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=33.9
Q ss_pred chhhhhchHHHHHHHhhhhhhhhhccchhHHHhhHHHHHHHHHHHHHHHHHHHhh
Q 010192 8 GELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQNLQKKSAALRHKIQT 62 (515)
Q Consensus 8 ~~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~sL~~r~e~L~~~~~~ 62 (515)
.++.++|.-.++.||.. +..|-.-|++-|+-|++|...|+.+.+.
T Consensus 6 EEKv~~LE~sld~LQTr----------fARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTR----------FARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45666666666666543 5678888999999999999999876655
No 11
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=28.85 E-value=1.7e+02 Score=28.72 Aligned_cols=92 Identities=8% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCCCchhhhhchHHHHHHHh-hhhhhhhhccchhHHHhhHHHHHH-----------HHHHHHHHHHHHHhhhhhhhh-hH
Q 010192 4 IPDPGELSELNPLSFDEFQR-QTSLMTSCTLLWKELSDHFTSLEQ-----------NLQKKSAALRHKIQTLDTQTK-AS 70 (515)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs-~~s~l~s~tl~W~eL~~HF~sLe~-----------sL~~r~e~L~~~~~~~e~~~~-~~ 70 (515)
.|++..--+..++|=..|+. |+.=++..--.|+|+++++..|.+ .|..||++.-+. +|.... +.
T Consensus 8 ~~~~~~EH~~f~~Ak~rLe~~hr~km~kVMkEW~Eae~q~k~l~kaDpk~Ae~~k~~m~~rFQ~~v~s---LEqE~a~Er 84 (239)
T 3k66_A 8 IANWTNEHDDFKKAEMRMDEKHRKKVDKVMKEWGDLETRYNEQKAKDPKGAEKFKSQMNARFQKTVSS---LEEEHKRMR 84 (239)
T ss_dssp CSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHHH---HhhhhHHHH
Confidence 56666666667788788864 445566778999999999999864 556666655432 222211 22
Q ss_pred HHHhhhhcccccccHHHHHHhhhhhHHHHHhhhhc
Q 010192 71 LDVLKKREVTIDGSVEIAMEKLEDRTEATLNSISR 105 (515)
Q Consensus 71 ~~~l~~re~~i~~~~~~~l~~l~e~~~aa~~s~~~ 105 (515)
+++. ..-.+....-|.++|..|+...-.
T Consensus 85 qqL~-------etH~qRV~a~LNerrr~Ale~y~~ 112 (239)
T 3k66_A 85 KEIE-------AVHEERVQAMLNEKKRDATHDYRQ 112 (239)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 222222234456778888877433
No 12
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=28.13 E-value=3.1e+02 Score=29.24 Aligned_cols=47 Identities=13% Similarity=0.208 Sum_probs=36.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-------Hhhhhcccccc
Q 010192 37 ELSDHFTSLEQNLQKKSAALRHKIQTLDTQTKASLD-------VLKKREVTIDG 83 (515)
Q Consensus 37 eL~~HF~sLe~sL~~r~e~L~~~~~~~e~~~~~~~~-------~l~~re~~i~~ 83 (515)
.|.+||..-|+.+.+..++|+.+..+++++|.++.+ .+++++..+..
T Consensus 86 ~l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~e 139 (464)
T 1m1j_B 86 ELQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKD 139 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccc
Confidence 458999999999999999999999999888877443 35555554443
No 13
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=25.84 E-value=1.1e+02 Score=25.94 Aligned_cols=64 Identities=19% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCCCchhhhhchHHHHHHHhhhhhhhhhccchhHHHhhHHHHH-------HHHHHHHHHHHHHHhhhhhhhhhHHHHh
Q 010192 4 IPDPGELSELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLE-------QNLQKKSAALRHKIQTLDTQTKASLDVL 74 (515)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe-------~sL~~r~e~L~~~~~~~e~~~~~~~~~l 74 (515)
|-||.|+ ++.-.+|+.... .+.-.|..|..||.+|. ....--|++|.+..+.++..+.+-..-|
T Consensus 5 ~~dpeEl----r~Fa~~L~~F~d---~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L 75 (94)
T 3fx7_A 5 QMDTEEV----REFVGHLERFKE---LLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWL 75 (94)
T ss_dssp CCCHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH----HHHHHHHHHHHH---HHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHH
Confidence 3455544 333344444332 23455677777777775 2233335556666666665554444444
No 14
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=24.23 E-value=2.2e+02 Score=27.32 Aligned_cols=93 Identities=12% Similarity=0.188 Sum_probs=49.2
Q ss_pred CCCCchhhhhchHHHHHHHhh-hhhhhhhccchhHHHhhHHHHHHH----HHHHHHHHHHHHhhhhhhhhhHHHHhhhhc
Q 010192 4 IPDPGELSELNPLSFDEFQRQ-TSLMTSCTLLWKELSDHFTSLEQN----LQKKSAALRHKIQTLDTQTKASLDVLKKRE 78 (515)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLqs~-~s~l~s~tl~W~eL~~HF~sLe~s----L~~r~e~L~~~~~~~e~~~~~~~~~l~~re 78 (515)
.|++..--+..++|=..|+.. +.=++..--.|.|+++++..|.+. |..||++.- .++|.... .+|+
T Consensus 13 ~~~~~~EH~~f~~Ak~~Le~~hr~k~~~VmkEW~eae~q~k~l~kadkk~~~~rFQ~~v---~aLE~E~~------~Erq 83 (211)
T 3umh_A 13 TPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKV---ESLEQEAA------NERQ 83 (211)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHH---HHHHHHHH------HHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH---HHHhhhhH------HHHH
Confidence 455665566677777777643 344456678999999999888654 455555543 23332221 1122
Q ss_pred ccccccHHHHHHhhhhhHHHHHhhhhc
Q 010192 79 VTIDGSVEIAMEKLEDRTEATLNSISR 105 (515)
Q Consensus 79 ~~i~~~~~~~l~~l~e~~~aa~~s~~~ 105 (515)
.-+..-.+....-|.++|..|+...-.
T Consensus 84 qL~etH~qRV~a~ln~rrr~Ale~y~~ 110 (211)
T 3umh_A 84 QLVETHMARVEAMLNDRRRLALENYIT 110 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222223334456788888887544
No 15
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=24.05 E-value=94 Score=23.37 Aligned_cols=33 Identities=21% Similarity=0.494 Sum_probs=25.5
Q ss_pred hccchhHHHhhHHHH-HHHHHHHHHHHHHHHhhh
Q 010192 31 CTLLWKELSDHFTSL-EQNLQKKSAALRHKIQTL 63 (515)
Q Consensus 31 ~tl~W~eL~~HF~sL-e~sL~~r~e~L~~~~~~~ 63 (515)
|--.|..|+..|+.| |+-.+.|...|+.+++++
T Consensus 11 ~ld~l~~LEkqF~~LkEqlY~ERl~ql~~~Leel 44 (49)
T 2xus_A 11 CVSEMLDLEKQFSELKEKLFRERLSQLRLRLEEV 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556788899999988 566778888887777665
No 16
>3k1h_A HP1076, putative uncharacterized protein; FLIS interacting protein, hypothetical protein, chaperone; 1.74A {Helicobacter pylori}
Probab=23.49 E-value=41 Score=30.95 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHhhhcchHHHHHHHHhhhchhHHHHhhHHHHhh----cCCChhhHHHHHhhcccC
Q 010192 126 SYCLKMEARGFWKFVVTKKKEIEELRNALPAALS----ECVDPAKFVMEAISEVFP 177 (515)
Q Consensus 126 ~lCe~MD~~gL~kfi~~~~ke~~~lr~Elp~ALr----~ApDPAkLVLdai~~fy~ 177 (515)
.+|++|| ||..||.+.+.|+...-.+|..|+- ..|.+.. +.+.+|..
T Consensus 103 ~ll~~~~--~l~aYie~K~~EIk~~Ls~iS~ai~~~~~~tPs~s~---~~~~~f~~ 153 (158)
T 3k1h_A 103 DLLENVG--EFQAYLEEKLNEIKELLGYLSESLSNPKAFMPSFSN---QSLKDLLS 153 (158)
T ss_dssp GGGGSHH--HHHHHHHHHHHHHHHHHHHHHHHHC----------------------
T ss_pred HHhhccc--HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcch---hhHHHhhH
Confidence 3568888 9999999999999988899999987 3566655 55555543
No 17
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=20.59 E-value=21 Score=43.95 Aligned_cols=7 Identities=43% Similarity=0.862 Sum_probs=3.7
Q ss_pred CChhhHH
Q 010192 162 VDPAKFV 168 (515)
Q Consensus 162 pDPAkLV 168 (515)
.+|...|
T Consensus 1058 v~pGe~V 1064 (1733)
T 1twf_A 1058 VHPGEMV 1064 (1733)
T ss_dssp CCTTCCH
T ss_pred CCCCchh
Confidence 5555544
No 18
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=20.38 E-value=58 Score=26.66 Aligned_cols=20 Identities=35% Similarity=0.466 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhhhccC
Q 010192 221 KEKAKEIAERWKASLEERGG 240 (515)
Q Consensus 221 keeAk~lA~~WK~kl~~~g~ 240 (515)
+|+|+.+|.+|..+|++.|.
T Consensus 44 ~e~Ak~~AIef~k~le~~Gr 63 (77)
T 3igm_B 44 KEKARLAAVEFMKTVENNGR 63 (77)
T ss_dssp HHHHHHHHHHHHHHTCSSSC
T ss_pred HHHHHHHHHHHHHHHHhcCc
Confidence 48999999999999987765
Done!