Query 010192
Match_columns 515
No_of_seqs 140 out of 161
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 21:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010192.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010192hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2gtsa1 a.25.5.1 (A:4-80) Hypo 67.7 3.1 0.00023 31.2 4.5 64 11-77 5-75 (77)
2 d1sxjb1 a.80.1.1 (B:231-322) R 25.7 42 0.0031 25.3 4.9 41 297-337 3-43 (92)
3 d1rw6a_ a.47.4.1 (A:) CAPPD, a 24.0 2.2E+02 0.016 24.7 10.5 92 4-105 8-105 (192)
4 d1vz0a1 a.4.14.1 (A:116-208) P 14.5 95 0.0069 23.7 4.6 54 244-308 3-57 (93)
5 d1u61a_ a.149.1.1 (A:) Hypothe 14.1 32 0.0023 28.0 1.7 61 247-307 11-75 (127)
6 d1eo0a_ a.48.3.1 (A:) Transcri 12.6 60 0.0044 24.4 2.8 19 217-235 58-76 (77)
7 d2hoea1 a.4.5.63 (A:10-71) N-a 11.8 46 0.0034 23.5 1.8 29 283-311 15-44 (62)
8 d1d5ya1 a.4.1.8 (A:3-56) Rob t 11.2 68 0.005 21.4 2.5 27 365-392 3-29 (54)
9 d1wjta_ a.48.3.1 (A:) Transcri 10.3 92 0.0067 24.3 3.3 22 217-238 68-89 (103)
10 d1ud0a_ a.8.4.1 (A:) DnaK {Rat 10.0 1E+02 0.0075 22.7 3.4 62 331-399 6-67 (84)
No 1
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter pylori [TaxId: 210]}
Probab=67.75 E-value=3.1 Score=31.19 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=35.9
Q ss_pred hhhchHHHHHHHhhhhhhhhhccchhHHHhhHHHHHH---HHHHHH----HHHHHHHhhhhhhhhhHHHHhhhh
Q 010192 11 SELNPLSFDEFQRQTSLMTSCTLLWKELSDHFTSLEQ---NLQKKS----AALRHKIQTLDTQTKASLDVLKKR 77 (515)
Q Consensus 11 ~e~l~kaF~eLqs~~s~l~s~tl~W~eL~~HF~sLe~---sL~~r~----e~L~~~~~~~e~~~~~~~~~l~~r 77 (515)
+|.++.....|++.+.+| +..-.-|+.||+.|+. .-+.|| +-|++...+|+.-+.+-+.-|++|
T Consensus 5 teevr~fv~hlerfkell---ndevngls~hf~nl~swqd~~rd~fsevldnlk~tfnefdea~qeqiawlker 75 (77)
T d2gtsa1 5 TEEVREFVGHLERFKELL---REEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKER 75 (77)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHhhHHHhhcchHhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777778888888774 4444567777776653 222233 233444445555555545555443
No 2
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.71 E-value=42 Score=25.33 Aligned_cols=41 Identities=5% Similarity=0.186 Sum_probs=34.8
Q ss_pred hHHHHHHHHcCcchHHHHHHHHhcCCCCCCChHHHHHHHHH
Q 010192 297 PEMIEELISRGQQLDAVHFTYEVGLVDKFPPVPLLKAFLKD 337 (515)
Q Consensus 297 pdiIe~LI~kGk~IeAV~fi~aF~L~dkFpPvpLLKsyl~~ 337 (515)
|..|+++|.+|..-+|...+..+=..+-|+...|++...+-
T Consensus 3 P~~I~~il~~~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~ 43 (92)
T d1sxjb1 3 PLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRV 43 (92)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 78899999999999999999987445679999999976654
No 3
>d1rw6a_ a.47.4.1 (A:) CAPPD, an extracellular domain of amyloid beta A4 protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.97 E-value=2.2e+02 Score=24.73 Aligned_cols=92 Identities=10% Similarity=0.170 Sum_probs=55.2
Q ss_pred CCCCchhhhhchHHHHHHH-hhhhhhhhhccchhHHHhhHHHH----HHHHHHHHHHHHHHHhhhhhhhh-hHHHHhhhh
Q 010192 4 IPDPGELSELNPLSFDEFQ-RQTSLMTSCTLLWKELSDHFTSL----EQNLQKKSAALRHKIQTLDTQTK-ASLDVLKKR 77 (515)
Q Consensus 4 ~~~~~~~~e~l~kaF~eLq-s~~s~l~s~tl~W~eL~~HF~sL----e~sL~~r~e~L~~~~~~~e~~~~-~~~~~l~~r 77 (515)
.||++.=-+..++|=..|+ .|+.=++-.--.|++++++...| .+++..||+..-... |.... +...+-+-
T Consensus 8 ~~~~~~Eh~~f~~Ak~rLee~hr~k~~~VmkeW~eaE~~~~~l~k~d~K~~~~rFq~~v~~L---E~e~~~erq~L~~~- 83 (192)
T d1rw6a_ 8 TPGDENEHAHFQKAKERLEAKHRERMSQVMREWEEAERQAKNLPKADKKAVIQHFQEKVESL---EQEAANERQQLVET- 83 (192)
T ss_dssp TTSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHH---hhhhHHHHhhHHHH-
Confidence 5777777777788877775 45555666778999999998776 356667776654333 22211 11111111
Q ss_pred cccccccHHHHHHhhhhhHHHHHhhhhc
Q 010192 78 EVTIDGSVEIAMEKLEDRTEATLNSISR 105 (515)
Q Consensus 78 e~~i~~~~~~~l~~l~e~~~aa~~s~~~ 105 (515)
=.+-..+.|.++|.+|+.....
T Consensus 84 ------H~~rV~a~ln~rrr~a~~~y~~ 105 (192)
T d1rw6a_ 84 ------HMARVEAMLNDRRRLALENYIT 105 (192)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHH
Confidence 1122234566788888887555
No 4
>d1vz0a1 a.4.14.1 (A:116-208) Putative partitioning protein ParB/Spo0J {Thermus thermophilus [TaxId: 274]}
Probab=14.49 E-value=95 Score=23.69 Aligned_cols=54 Identities=20% Similarity=0.276 Sum_probs=33.6
Q ss_pred CCch-hHHHHHHHHHHhcCCcccCHHHHHHHhhcccchhhhHHHHHhcCCCCChhHHHHHHHHcCc
Q 010192 244 VKTP-DVHTFLQLLVTFGIVKKEDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRGQ 308 (515)
Q Consensus 244 ~~~l-ea~gFLqlLa~fGI~seFd~del~~Lv~~va~rkq~~eL~~sLGL~~KmpdiIe~LI~kGk 308 (515)
.+++ +|.||-.|+ -|| ++.+++.+.|. +-+.. +-..|.|. ++|+-|+.+|..|+
T Consensus 3 L~piEeA~a~~~L~-e~g----~t~~~iA~~~G---ks~~~--V~~~LrLl-~L~~~v~~~l~~g~ 57 (93)
T d1vz0a1 3 LSPVEEARGYQALL-EMG----LTQEEVARRVG---KARST--VANALRLL-QLPPEALEALERGE 57 (93)
T ss_dssp CCHHHHHHHHHHHH-HTT----CCHHHHHHHHT---CCHHH--HHHHHHGG-GSCHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHH-HcC----CCHHHHHHHHc---cchHH--HHHHHHHH-HHHHHHHHHHHcCC
Confidence 3455 489999998 588 48888887753 21111 22233333 55677788888886
No 5
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]}
Probab=14.13 E-value=32 Score=27.95 Aligned_cols=61 Identities=15% Similarity=0.132 Sum_probs=42.7
Q ss_pred hhHHH--HHHHHHHhcCCcc--cCHHHHHHHhhcccchhhhHHHHHhcCCCCChhHHHHHHHHcC
Q 010192 247 PDVHT--FLQLLVTFGIVKK--EDVDLYRKLVVGSAWRKQMPKLAVSLGLGDKMPEMIEELISRG 307 (515)
Q Consensus 247 lea~g--FLqlLa~fGI~se--Fd~del~~Lv~~va~rkq~~eL~~sLGL~~KmpdiIe~LI~kG 307 (515)
||-+| .|.|+++.=|... .++.++-++...+.+.+...++++.+||.+.+..--..++++|
T Consensus 11 LefLGDAVl~l~v~~~L~~~~p~~eg~Lt~~r~~lV~~~~la~~a~~l~l~~~l~~~e~~~~~~G 75 (127)
T d1u61a_ 11 LAYMGDAVYEQYIRYHLLQKGKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLRRG 75 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHccHHHHHHHHHHhCcHHHhhhccccccccC
Confidence 55554 7778877666544 4678888888777777778889999999887754444444444
No 6
>d1eo0a_ a.48.3.1 (A:) Transcription elongation factor TFIIS N-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.65 E-value=60 Score=24.39 Aligned_cols=19 Identities=16% Similarity=0.499 Sum_probs=17.1
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 010192 217 TPSVKEKAKEIAERWKASL 235 (515)
Q Consensus 217 s~~vkeeAk~lA~~WK~kl 235 (515)
+++|...|+.|...||..+
T Consensus 58 ~~~v~~lAk~Lv~~WK~~V 76 (77)
T d1eo0a_ 58 NVEISKLVKKMISSWKDAI 76 (77)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 5689999999999999886
No 7
>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=11.75 E-value=46 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=24.7
Q ss_pred hHHHHHhcCCCC-ChhHHHHHHHHcCcchH
Q 010192 283 MPKLAVSLGLGD-KMPEMIEELISRGQQLD 311 (515)
Q Consensus 283 ~~eL~~sLGL~~-KmpdiIe~LI~kGk~Ie 311 (515)
-.+|++.+||.- .+..+|+.|++.|.-.+
T Consensus 15 r~eLa~~~gls~~TVs~~v~~L~~~GlV~e 44 (62)
T d2hoea1 15 RVELAEELGLTKTTVGEIAKIFLEKGIVVE 44 (62)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 478999999995 69999999999987544
No 8
>d1d5ya1 a.4.1.8 (A:3-56) Rob transcription factor, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.19 E-value=68 Score=21.45 Aligned_cols=27 Identities=15% Similarity=0.311 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCCCCChhHHHHHH
Q 010192 365 SALRAVIKCIEDYKLQGEFPPENLKKRL 392 (515)
Q Consensus 365 ~aLksViKcIEd~KLese~p~~~L~krI 392 (515)
+.+..|+..|++| ++..+++++|.+..
T Consensus 3 ~ii~~i~~yi~~~-~~~~itl~~lA~~~ 29 (54)
T d1d5ya1 3 GIIRDLLIWLEGH-LDQPLSLDNVAAKA 29 (54)
T ss_dssp HHHHHHHHHHHTT-SSSSCCCHHHHTTT
T ss_pred HHHHHHHHHHHHc-cCCCCCHHHHHHHH
Confidence 5678899999999 78789888887643
No 9
>d1wjta_ a.48.3.1 (A:) Transcription elongation factor S-II protein 3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.33 E-value=92 Score=24.29 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.2
Q ss_pred ChhHHHHHHHHHHHHHHHhhhc
Q 010192 217 TPSVKEKAKEIAERWKASLEER 238 (515)
Q Consensus 217 s~~vkeeAk~lA~~WK~kl~~~ 238 (515)
.++|+..|+.|-..||..+...
T Consensus 68 ~~~v~~lAk~Lv~~WK~~v~~~ 89 (103)
T d1wjta_ 68 DKEVVSLAKVLIKNWKRLLDSP 89 (103)
T ss_dssp CSHHHHHHHHHHHHHHHHTCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHhh
Confidence 3589999999999999998754
No 10
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.03 E-value=1e+02 Score=22.72 Aligned_cols=62 Identities=15% Similarity=0.217 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchHHhhHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhh
Q 010192 331 LKAFLKDAKKAAVSILEDPNNAGRAAHLAARKEQSALRAVIKCIEDYKLQGEFPPENLKKRLEQLEKAK 399 (515)
Q Consensus 331 LKsyl~~akk~~~~~~~~g~~s~~a~~eA~~kEl~aLksViKcIEd~KLese~p~~~L~krI~qLEK~k 399 (515)
|.+||=..|..... .+.......+-.++=..+|..+..-++++. +...+.++++..+|+..-
T Consensus 6 LEsyiy~~r~~l~d----~~~~~kl~~~dk~~i~~~l~e~~~WL~~n~---~a~~ee~~~k~~eLe~~~ 67 (84)
T d1ud0a_ 6 LESYAFNMKATVED----EKLQGKINDEDKQKILDKCNEIISWLDKNQ---TAEKEEFEHQQKELEKVC 67 (84)
T ss_dssp HHHHHHHHHHHHTS----GGGTTTSCHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcc----hhhccccCHHHHHHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHH
Confidence 78899888876532 111111122222333466777777777653 345688889898887753
Done!