BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010193
(515 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 125/326 (38%), Gaps = 73/326 (22%)
Query: 184 EAEQVMYGALDNLFSNTNVNPKDIGILV-VNCSLFNPTPSLSAMIVNKYRLRGNIRSYNL 242
EA+ + + + + DI +++ V+C+ F PSL+A ++N+ R +
Sbjct: 83 EAKSRVPAVIQRALDDAELLATDIDVIIYVSCTGFM-MPSLTAWLINEMGFDSTTRQIPI 141
Query: 243 GGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGN-KKSMLIPNCLFRVGCS 301
+GC+AG A++ A D A++V+ E + + + L+ N LF G +
Sbjct: 142 AQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCSLCYQPTDLGVGSLLCNGLFGDGIA 201
Query: 302 AVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGG 361
A ++ + G TGV L +
Sbjct: 202 AAVVRGR------------------------------------GGTGVRLERN------- 218
Query: 362 ALKTNITTLGPVVLPVSEQLLFFAT------LVIKKLFNRNVKPYIPDFK-LAFDH---- 410
G ++P +E + + ++ K ++P P K LA +H
Sbjct: 219 ---------GSYLIPKTEDWIMYDVKATGFHFLLDKRVPATMEPLAPALKELAGEHGWDA 269
Query: 411 -----FCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGR 465
+ +HAGG ++D+L L++ P SR TL +GN +S+ + L + +G
Sbjct: 270 SDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALRRLFDEGG 329
Query: 466 MCRGHRVWQIAFGSGFKCNSAV--WQ 489
+ G R FG G ++ WQ
Sbjct: 330 VEEGARGLLAGFGPGITAEMSLGCWQ 355
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 113/265 (42%), Gaps = 57/265 (21%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSM--L 290
L +++ Y + GC AG + LAKDL + N + ++V +EN + + ++ M L
Sbjct: 151 LDPSVKRYMMYHQGCFAGGTVLRLAKDLAENNKDARVLIVCSENTSVTFRGPSETDMDSL 210
Query: 291 IPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVS 350
+ LF G +A+++ + + + L IV T
Sbjct: 211 VGQALFADGAAAIIIGSDPVP--EVENPLFEIVST------------------------- 243
Query: 351 LSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPYIPDFKLAFDH 410
++L+ + GA+ + +G L F+ + + ++N+ + AFD
Sbjct: 244 -DQQLVPNSHGAIGGLLREVG---------LTFYLNKSVPDIISQNINDALSK---AFDP 290
Query: 411 FCI----------HAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYI 460
I H GGRA++D++E+ + L P ++A+R L +GN SS+ +++ + +
Sbjct: 291 LGISDYNSIFWIAHPGGRAILDQVEEKVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLM 350
Query: 461 EAK----GRMCRGHRV-WQIAFGSG 480
K G G + W + FG G
Sbjct: 351 RKKSLEAGLKTTGEGLDWGVLFGFG 375
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 65/297 (21%), Positives = 118/297 (39%), Gaps = 36/297 (12%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
DI LVV + P + +V LR ++R L GC AG A+ LAKDL + +
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 266 NTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHI 322
+VV+ E +T ++ G + L+ LF G +AV++ D + + +V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 265
Query: 323 VRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLL 382
+T D A + E+ G G +++ + G ++ + + L
Sbjct: 266 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 315
Query: 383 FFATLVIKKLFNRNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTL 442
LF + +H G ++D+++ L L P + ASR L
Sbjct: 316 GDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 358
Query: 443 HRFGNTSSSSIWYELAYIEAKGRMCRGHRVW-----QIAFGSGFKCNSAVWQALQNV 494
+GN S +++ + L + + + W +AFG G ++ + A +V
Sbjct: 359 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHV 415
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 67/302 (22%), Positives = 119/302 (39%), Gaps = 41/302 (13%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
DI LVV + P + +V LR ++R L GC AG A+ LAKDL + +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 266 NTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHI 322
+VV+ E +T ++ G + L+ LF G +AV++ D + + +V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 323 VRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLL 382
+T D A + E+ G G +++ + G ++ + + L
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 285
Query: 383 FFATLVIKKLFNRNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTL 442
LF + +H G ++D+++ L L P + ASR L
Sbjct: 286 GDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 328
Query: 443 HRFGNTSSSSIWYELAYIEAKGRMCRGHRVW-----QIAFGSGFKCNSAVWQALQNVKPS 497
+GN S +++ + L + + + W +AFG G ++ + A S
Sbjct: 329 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHAT-----S 383
Query: 498 HH 499
HH
Sbjct: 384 HH 385
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/262 (24%), Positives = 107/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + GC AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 259
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 260 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 294
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 295 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 353 STQNGLKTTGEGLEWGVLFGFG 374
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 68/280 (24%), Positives = 108/280 (38%), Gaps = 63/280 (22%)
Query: 221 PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQN 280
P + N L ++R L GC AG + AKDL + N +VV +E IT
Sbjct: 725 PGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLRTAKDLAENNAGARVLVVCSE-ITVV 783
Query: 281 WYFGNKKSML---IPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCV 337
+ G + L + LF G +AV++ + D R +
Sbjct: 784 TFRGPSEDALDSLVGQALFGDGSAAVIVGSD--------------------PDISIERPL 823
Query: 338 YQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNV 397
+Q VS ++ + + GA+ N+ +G L F + L + NV
Sbjct: 824 FQL--------VSAAQTFIPNSAGAIAGNLREVG---------LTFHLWPNVPTLISENV 866
Query: 398 KPYIPDFKLAFDHFCI----------HAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGN 447
+ + AFD I H GG A++D +E L L +EA+R L +GN
Sbjct: 867 EKCLTQ---AFDPLGISDWNSLFWIAHPGGPAILDAVEAKLNLDKKKLEATRHVLSEYGN 923
Query: 448 TSSSSIWYELAYIEAKGRMCRGHRV-------WQIAFGSG 480
SS+ + + L E + + +G R W + FG G
Sbjct: 924 MSSACVLFILD--EMRKKSLKGERATTGEGLDWGVLFGFG 961
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 85/401 (21%), Positives = 157/401 (39%), Gaps = 71/401 (17%)
Query: 122 PHNL--KASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSMA 179
P N+ +A+Y F + + D +FQR I ++SG+ + ++ + + P+M
Sbjct: 45 PANVFEQATYPDFFFNITNSNDKPALKAKFQR-ICDKSGIKKRHFYLD-QKILESNPAMC 102
Query: 180 AAREEA----EQVMYGALDNLFSNTNVN-------PK-DIGILVVNCSLFNPTPSLSAMI 227
E + +++ + L ++N PK +I +V+ + P
Sbjct: 103 TYMETSLNCRQEIAVAQVPKLAKEASMNAIKEWGRPKSEITHIVMATTSGVNMPGAELAT 162
Query: 228 VNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKK 287
LR N+R + G AG + +AKDL + N + + +E + ++
Sbjct: 163 AKLLGLRPNVRRVMMYQQGXFAGATVLRVAKDLAENNAGARVLAICSEVTAVTFRAPSET 222
Query: 288 SM--LIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQG 345
+ L+ + LF G +AV++ + D R R ++ + A V E D
Sbjct: 223 HIDGLVGSALFGDGAAAVIVGS---DPRPGIERPIYEMHW-------AGEMVLPESD--- 269
Query: 346 KTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPYIPDFK 405
GA+ ++T G L+F + L +N+ ++ D K
Sbjct: 270 ---------------GAIDGHLTEAG---------LVFHLLKDVPGLITKNIGGFLKDTK 305
Query: 406 LAFDH-------FCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELA 458
+ +H GG A++D++E L+L +ASR L +GN SS+S+ + L
Sbjct: 306 NLVGASSWNELFWAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLD 365
Query: 459 YIEA------KGRMCRGHRVWQ--IAFGSGFKCNSAVWQAL 491
+ K G W I FG G + + +AL
Sbjct: 366 RVRERSLESNKSTFGEGSE-WGFLIGFGPGLTVETLLLRAL 405
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 259
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 260 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 294
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 295 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 353 STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 69/293 (23%), Positives = 113/293 (38%), Gaps = 52/293 (17%)
Query: 203 NPKDIGILVVNCSLFNPT-PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLL 261
PK ++ CS P P + LR ++ + GC AG + LAKDL
Sbjct: 123 QPKSKITHLIVCSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLA 182
Query: 262 QVNWNTYAVVVSTENITQNWYFGNKKS---MLIPNCLFRVGCSAVLL-SNKRKDRRQAKY 317
+ N +VV +E +T + G + L+ LF G +A+++ S+ + + +
Sbjct: 183 ENNKGARVLVVCSE-VTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIF 241
Query: 318 RLVHIVRT----HKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPV 373
+V +T +GA D R L+ L + NIT
Sbjct: 242 EMVWTAQTIAPDSEGAIDGHLR------------EAGLTFHLKGAVPDIVSKNIT----- 284
Query: 374 VLPVSEQLLFFATLVIKKLFNRNVKPY-IPDFKLAFDHFCIHAGGRAVIDELEKNLQLLP 432
K +P I D+ F + H GG A++D++E+ L L P
Sbjct: 285 -----------------KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKP 325
Query: 433 VHVEASRMTLHRFGNTSSSSIWYELAYIEAK----GRMCRGHRV-WQIAFGSG 480
+ A+R L +GN SS+ + + L + K G G + W + FG G
Sbjct: 326 EKMNATREVLSEYGNMSSACVLFILDEMRKKSTQNGLKTTGEGLEWGVLFGFG 378
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTG 348
L+ LF G +A+++ S+ + + + +V +T + A +E
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDAHLRE-------- 260
Query: 349 VSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPDFKLA 407
L+ L+ G + NIT K +P I D+
Sbjct: 261 AGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISDYNSI 298
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK---- 463
F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 299 F--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 464 GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 357 GLKTTGEGLEWGVLFGFG 374
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/283 (21%), Positives = 114/283 (40%), Gaps = 43/283 (15%)
Query: 221 PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQN 280
P +V L +++ Y L G +AG + LAKDL + N + ++V +E IT
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSE-ITAI 201
Query: 281 WYFG---NKKSMLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCV 337
+ G N L+ LF G +A+++ + H + F V
Sbjct: 202 LFHGPNENHLDSLVAQALFGDGAAALIVGSG----------------PHLAVERPIFEIV 245
Query: 338 YQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNV 397
+Q ++ A+K ++ G + + + I+ + +
Sbjct: 246 STDQ------------TILPDTEKAMKLHLRE-GGLTFQLHRDVPLMVAKNIENAAEKAL 292
Query: 398 KPY-IPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYE 456
P I D+ F + +H GGRA++D++E+ L L + ASR L +GN S+ + +
Sbjct: 293 SPLGITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLFI 350
Query: 457 LAYIE----AKGRMCRGHRV---WQIAFGSGFKCNSAVWQALQ 492
+ + A+G+ G + FG G + V ++++
Sbjct: 351 IDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVR 393
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTG 348
L+ LF G +A+++ S+ + + + +V +T + A +E
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDVHLRE-------- 260
Query: 349 VSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPDFKLA 407
L+ L+ G + NIT K +P I D+
Sbjct: 261 AGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISDYNSI 298
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK---- 463
F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 299 F--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 464 GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 357 GLKTTGEGLEWGVLFGFG 374
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 259
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 260 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 294
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 295 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 353 STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTG 348
L+ LF G +A+++ S+ + + + +V +T + A +E
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDLHLRE-------- 260
Query: 349 VSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPDFKLA 407
L+ L+ G + NIT K +P I D+
Sbjct: 261 AGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISDYNSI 298
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK---- 463
F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 299 F--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 464 GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 357 GLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 149 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 207
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 208 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 258
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 259 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 293
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 294 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 351
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 352 STQNGLKTTGEGLEWGVLFGFG 373
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 106/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 259
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 260 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 294
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 295 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 353 STQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 105/258 (40%), Gaps = 43/258 (16%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTG 348
L+ LF G +A+++ S+ + + + +V +T + A +E
Sbjct: 209 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDFHLRE-------- 260
Query: 349 VSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPDFKLA 407
L+ L+ G + NIT K +P I D+
Sbjct: 261 AGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISDYNSI 298
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK---- 463
F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 299 F--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKKSTQN 356
Query: 464 GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 357 GLKTTGEGLEWGVLFGFG 374
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 40/293 (13%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
+IG+LV+ S P + IV + L +I + MGC+A + A+ A + ++ +
Sbjct: 134 EIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193
Query: 266 NTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRT 325
A+VV E + N F + + ++ + LF GC+A+++ + + ++V
Sbjct: 194 AMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV----- 248
Query: 326 HKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFF- 384
R + + D + G+ L G IT +SE L +
Sbjct: 249 --------VRSSFSQLLDNTEDGIVL---------GVNHNGITC------ELSENLPGYI 285
Query: 385 ----ATLVIKKLFNRNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRM 440
A +V + L++ ++ I D D + IH GG +I++ ++L + S
Sbjct: 286 FSGVAPVVTEMLWDNGLQ--ISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWD 339
Query: 441 TLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVW-QIAFGSGFKCNSAVWQALQ 492
L RFGN S S+ + L + + + AFG G ++ ++
Sbjct: 340 VLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 120/293 (40%), Gaps = 40/293 (13%)
Query: 206 DIGILVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNW 265
+IG+LV+ S P + IV + L +I + MGC+A + A+ A + ++ +
Sbjct: 134 EIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVRAHP 193
Query: 266 NTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRT 325
A+VV E + N F + + ++ + LF GC+A+++ + + ++V
Sbjct: 194 AMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIGASQVQEKLEPGKVV----- 248
Query: 326 HKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFF- 384
R + + D + G+ L G IT +SE L +
Sbjct: 249 --------VRSSFSQLLDNTEDGIVL---------GVNHNGITC------ELSENLPGYI 285
Query: 385 ----ATLVIKKLFNRNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRM 440
A +V + L++ ++ I D D + IH GG +I++ ++L + S
Sbjct: 286 FSGVAPVVTEMLWDNGLQ--ISD----IDLWAIHPGGPKIIEQSVRSLGISAELAAQSWD 339
Query: 441 TLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVW-QIAFGSGFKCNSAVWQALQ 492
L RFGN S S+ + L + + + AFG G ++ ++
Sbjct: 340 VLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 149 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 207
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 208 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 258
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 259 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 293
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 294 YNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 351
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 352 STQNGLKTTGEGLEWGVLFGFG 373
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 148 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 206
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ LF G +A+++ S+ + + + +V +T +GA D R
Sbjct: 207 LVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 257
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 258 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 292
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +G SS+ + + L + K
Sbjct: 293 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGAMSSACVLFILDEMRKK 350
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 351 STQNGLKTTGEGLEWGVLFGFG 372
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 105/262 (40%), Gaps = 51/262 (19%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKS---M 289
LR ++ Y + G AG + LAKDL + N +VV +E +T + G +
Sbjct: 150 LRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVVCSE-VTAVTFRGPSDTHLDS 208
Query: 290 LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRT----HKGADDKAFRCVYQEQDDQ 344
L+ L G +A+++ S+ + + + +V +T +GA D R
Sbjct: 209 LVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIAPDSEGAIDGHLR--------- 259
Query: 345 GKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPY-IPD 403
L+ L+ G + NIT K +P I D
Sbjct: 260 ---EAGLTFHLLKDVPGIVSKNIT----------------------KALVEAFEPLGISD 294
Query: 404 FKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK 463
+ F + H GG A++D++E+ L L P + A+R L +GN SS+ + + L + K
Sbjct: 295 YNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACVLFILDEMRKK 352
Query: 464 ----GRMCRGHRV-WQIAFGSG 480
G G + W + FG G
Sbjct: 353 STQNGLKTTGEGLEWGVLFGFG 374
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 117/291 (40%), Gaps = 63/291 (21%)
Query: 210 LVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYA 269
L+V C P + L +++ + +GC AG + LAKD+ + N
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 270 VVVSTENITQNWYFGNKKSML---IPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTH 326
++V +E +T + G ++ L I LF G +AV++
Sbjct: 183 LIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIV--------------------- 220
Query: 327 KGADDK--AFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFF 384
GAD R +++ VS ++ ++ + GA++ ++ G L F
Sbjct: 221 -GADPDLTVERPIFEL--------VSTAQTIVPESHGAIEGHLLESG---------LSFH 262
Query: 385 ATLVIKKLFNRNVKPYIPDFKLAFDHFCI----------HAGGRAVIDELEKNLQLLPVH 434
+ L + N+K + D AF I H GG A++D++ + L
Sbjct: 263 LYKTVPTLISNNIKTCLSD---AFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEK 319
Query: 435 VEASRMTLHRFGNTSSSSIWYELAYIEAK----GRMCRGHRV-WQIAFGSG 480
++ +R L +GN SS+++++ + + K G+ G + W + FG G
Sbjct: 320 LKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 414 HAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIE----AKGRMCRG 469
H GGRA++D++E L+L P A+R L +GN S+S+ Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 470 HRV-WQI--AFGSGFKCNSAVWQAL 491
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)
Query: 414 HAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIE----AKGRMCRG 469
H GGRA++D++E L+L P A+R L +GN S+S+ Y L + AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 470 HRV-WQI--AFGSGFKCNSAVWQAL 491
+ W + FG G + + +L
Sbjct: 379 EGLEWGVLLGFGPGITVETILLHSL 403
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 95/238 (39%), Gaps = 48/238 (20%)
Query: 233 LRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSM--L 290
LR ++ L G AG + +AKDL + N +V +E + ++ + L
Sbjct: 163 LRPTVKRVMLYQQGXYAGATVLRVAKDLAENNKGARVLVACSEVTAVTFRAPSETHLDGL 222
Query: 291 IPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVS 350
+ + LF G +A+++ + + + +H A V + D
Sbjct: 223 VGSALFGDGAAALIVGSDPVPQEEKPLFEIHW----------AGEAVLPDSD-------- 264
Query: 351 LSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPYIPDFKLAFDH 410
GA+ ++ G L+F + L ++N+ + + L + H
Sbjct: 265 ----------GAINGHLREAG---------LIFHLLKDVPGLISKNIDKVLAE-PLEYVH 304
Query: 411 F--------CIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYI 460
F +H GG A++D++E L L ++ASR L +GN SS+S+ + L I
Sbjct: 305 FPSYNDMFWAVHPGGPAILDQIEAKLGLSTDKMQASRDVLASYGNMSSASVLFVLDQI 362
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 35/251 (13%)
Query: 211 VVNCSLFNPT-PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYA 269
++ CS P P + L +++ + GC AG + +AKDL + N
Sbjct: 150 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 209
Query: 270 VVVSTENITQNWYFGNKKSM--LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRTH 326
+V+ +E + ++ + L+ LF G SA+++ ++ +A + +V +T
Sbjct: 210 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTV 269
Query: 327 KGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFAT 386
+ A +E V L+ +L + NI + E F
Sbjct: 270 VPNSEGAIGGKVRE--------VGLTFQLKGAVPDLISANIENC------MVEAFSQFKI 315
Query: 387 LVIKKLFNRNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFG 446
KLF + +H GGRA++D +E L L P + +R + +G
Sbjct: 316 SDWNKLF-----------------WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYG 358
Query: 447 NTSSSSIWYEL 457
N SS+ + + L
Sbjct: 359 NMSSACVHFIL 369
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 35/251 (13%)
Query: 211 VVNCSLFNPT-PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYA 269
++ CS P P + L +++ + GC AG + +AKDL + N
Sbjct: 134 LIFCSTTTPDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVLRMAKDLAENNRGARV 193
Query: 270 VVVSTENITQNWYFGNKKSM--LIPNCLFRVGCSAVLL-SNKRKDRRQAKYRLVHIVRTH 326
+V+ +E + ++ + L+ LF G SA+++ ++ +A + +V +T
Sbjct: 194 LVICSETTAVTFRGPSETHLDSLVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTV 253
Query: 327 KGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFAT 386
+ A +E V L+ +L + NI + E F
Sbjct: 254 VPNSEGAIGGKVRE--------VGLTFQLKGAVPDLISANIENC------MVEAFSQFKI 299
Query: 387 LVIKKLFNRNVKPYIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFG 446
KLF + +H GGRA++D +E L L P + +R + +G
Sbjct: 300 SDWNKLF-----------------WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYG 342
Query: 447 NTSSSSIWYEL 457
N SS+ + + L
Sbjct: 343 NMSSACVHFIL 353
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 120/308 (38%), Gaps = 42/308 (13%)
Query: 179 AAAREEAEQVMYGALDNLFSNTNVNPKDI-GILVVNCSLFNPTPSLSAMIVNKYRLRGNI 237
AA E A + A SN ++ DI G++V + F TP + M+ +G I
Sbjct: 75 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 133
Query: 238 RSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 296
++L GC+ A+ A D+++ +VV TE ++ ++ NC +F
Sbjct: 134 LGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG-----NCFIF 187
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELM 356
G +AV++ + I T G+D + + Q+ D ++ ++
Sbjct: 188 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQ--- 230
Query: 357 AIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNR--NVKPYIPDFKLAFDHFCIH 414
N + P V + +A + + R + PD D F H
Sbjct: 231 ---------NPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPD---QIDVFVPH 278
Query: 415 AGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQ 474
+ + L KNLQL P V A+ + GNTS++SI +A + G G
Sbjct: 279 QANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 336
Query: 475 IAFGSGFK 482
I +G+G
Sbjct: 337 IGYGAGLS 344
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 120/308 (38%), Gaps = 42/308 (13%)
Query: 179 AAAREEAEQVMYGALDNLFSNTNVNPKDI-GILVVNCSLFNPTPSLSAMIVNKYRLRGNI 237
AA E A + A SN ++ DI G++V + F TP + M+ +G I
Sbjct: 55 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 113
Query: 238 RSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 296
++L GC+ A+ A D+++ +VV TE ++ ++ NC +F
Sbjct: 114 LGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG-----NCFIF 167
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELM 356
G +AV++ + I T G+D + + Q+ D ++ ++
Sbjct: 168 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQ--- 210
Query: 357 AIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNR--NVKPYIPDFKLAFDHFCIH 414
N + P V + +A + + R + PD D F H
Sbjct: 211 ---------NPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPD---QIDVFVPH 258
Query: 415 AGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQ 474
+ + L KNLQL P V A+ + GNTS++SI +A + G G
Sbjct: 259 QANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 316
Query: 475 IAFGSGFK 482
I +G+G
Sbjct: 317 IGYGAGLS 324
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 116/291 (39%), Gaps = 63/291 (21%)
Query: 210 LVVNCSLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYA 269
L+V C P + L +++ + +GC AG + LAKD+ + N
Sbjct: 123 LIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIAENNKGARV 182
Query: 270 VVVSTENITQNWYFGNKKSML---IPNCLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTH 326
++V +E +T + G ++ L I + G +AV++
Sbjct: 183 LIVCSE-MTTTCFRGPSETHLDSMIGQAILGDGAAAVIV--------------------- 220
Query: 327 KGADDK--AFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFF 384
GAD R +++ VS ++ ++ + GA++ ++ G L F
Sbjct: 221 -GADPDLTVERPIFEL--------VSTAQTIVPESHGAIEGHLLESG---------LSFH 262
Query: 385 ATLVIKKLFNRNVKPYIPDFKLAFDHFCI----------HAGGRAVIDELEKNLQLLPVH 434
+ L + N+K + D AF I H GG A++D++ + L
Sbjct: 263 LYKTVPTLISNNIKTCLSD---AFTPLNISDWNSLFWIAHPGGPAILDQVTAKVGLEKEK 319
Query: 435 VEASRMTLHRFGNTSSSSIWYELAYIEAK----GRMCRGHRV-WQIAFGSG 480
++ +R L +GN SS+++++ + + K G+ G + W + FG G
Sbjct: 320 LKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 75/353 (21%), Positives = 135/353 (38%), Gaps = 80/353 (22%)
Query: 152 KILERSGLGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDNLFSNTNVNPKDIGILV 211
KIL ++G+ E +AA RE A + Y A LF+ V + ++
Sbjct: 61 KILAKTGIRER--------------RIAAPRETAADLAYEAARKLFAQGAVGADQVDFVI 106
Query: 212 VNCSLFNPT-PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAV 270
+ + P+ + M+ ++ + + + ++ +GCS V + LAK L++ +
Sbjct: 107 LCTQAPDYVLPTSACMLQHRLGIPTHAGALDVN-LGCSGYVYGLSLAKGLVETGAARCVL 165
Query: 271 VVSTENITQNWYFGNKKSMLIPNCLFRVGCSAVLLSNKR------------KDRRQAKYR 318
+++ + ++ + +K LF G SA + + D R A
Sbjct: 166 LLTADTYSKYLHPLDKSV----RTLFGDGASATAVIAEHGELERIGPFVFGTDGRGAPNL 221
Query: 319 LVH--IVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLP 376
+V + R K AD +E +D A G ++T+
Sbjct: 222 IVKAGLFREPKSADSA------REHED---------------ASGNVRTD---------- 250
Query: 377 VSEQLLFFATLVIKKLFNRNVKPYIPDFKLAF--------DHFCIHAGGRAVIDELEKNL 428
E L V+ F+ P D LA D F +H R ++D L K +
Sbjct: 251 --EHLYMNGAEVMA--FSLAEVPRAADRLLALAGEPRENIDCFVLHQANRFMLDALRKKM 306
Query: 429 QLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGF 481
++ P H + + GNT SS++ L + A G + RG R+ + FG G+
Sbjct: 307 KI-PEH--KFPVLMEHCGNTVSSTLPLALETMRANGTLARGMRLMLLGFGVGY 356
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 119/308 (38%), Gaps = 42/308 (13%)
Query: 179 AAAREEAEQVMYGALDNLFSNTNVNPKDI-GILVVNCSLFNPTPSLSAMIVNKYRLRGNI 237
AA E A + A SN ++ DI G++V + F TP + M+ +G I
Sbjct: 76 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 134
Query: 238 RSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 296
++L GC+ A+ A D+++ +VV TE ++ + NC +F
Sbjct: 135 LGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDAG-----NCFIF 188
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELM 356
G +AV++ + I T G+D + + Q+ D ++ ++
Sbjct: 189 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQ--- 231
Query: 357 AIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNR--NVKPYIPDFKLAFDHFCIH 414
N + P V + +A + + R + PD D F H
Sbjct: 232 ---------NPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPD---QIDVFVPH 279
Query: 415 AGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQ 474
+ + L KNLQL P V A+ + GNTS++SI +A + G G
Sbjct: 280 QANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 337
Query: 475 IAFGSGFK 482
I +G+G
Sbjct: 338 IGYGAGLS 345
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 119/308 (38%), Gaps = 42/308 (13%)
Query: 179 AAAREEAEQVMYGALDNLFSNTNVNPKDI-GILVVNCSLFNPTPSLSAMIVNKYRLRGNI 237
AA E A + A SN ++ DI G++V + F TP + M+ +G I
Sbjct: 76 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 134
Query: 238 RSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 296
++L GC+ A+ A D+++ +VV TE ++ + NC +F
Sbjct: 135 LGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDAG-----NCFIF 188
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELM 356
G +AV++ + I T G+D + + Q+ D ++ ++
Sbjct: 189 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQ--- 231
Query: 357 AIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNR--NVKPYIPDFKLAFDHFCIH 414
N + P V + +A + + R + PD D F H
Sbjct: 232 ---------NPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPD---QIDVFVPH 279
Query: 415 AGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQ 474
+ + L KNLQL P V A+ + GNTS++SI +A + G G
Sbjct: 280 QANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 337
Query: 475 IAFGSGFK 482
I +G+G
Sbjct: 338 IGYGAGLS 345
>pdb|2QNY|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QNY|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And Ss-(2-Hydroxyethyl) O-Decyl
Ester Carbono(Dithioperoxoic) Acid
pdb|2QO0|A Chain A, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
pdb|2QO0|B Chain B, Crystal Structure Of The Complex Between The A246f Mutant
Of Mycobacterium Beta-Ketoacyl-Acyl Carrier Protein
Synthase Iii (Fabh) And 11-(Decyldithiocarbonyloxy)-
Undecanoic Acid
Length = 335
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 120/308 (38%), Gaps = 42/308 (13%)
Query: 179 AAAREEAEQVMYGALDNLFSNTNVNPKDI-GILVVNCSLFNPTPSLSAMIVNKYRLRGNI 237
AA E A + A SN ++ DI G++V + F TP + M+ +G I
Sbjct: 55 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 113
Query: 238 RSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 296
++L GC+ A+ A D+++ +VV TE ++ ++ NC +F
Sbjct: 114 LGFDLS-AGCAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG-----NCFIF 167
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELM 356
G +AV++ + I T G+D + + Q+ D ++ ++
Sbjct: 168 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQ--- 210
Query: 357 AIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNR--NVKPYIPDFKLAFDHFCIH 414
N + P V + +A + + R + PD D F H
Sbjct: 211 ---------NPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPD---QIDVFVPH 258
Query: 415 AGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQ 474
+ + L KNLQL P V A+ + GNTS++SI +A + G G
Sbjct: 259 QFNSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 316
Query: 475 IAFGSGFK 482
I +G+G
Sbjct: 317 IGYGAGLS 324
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/264 (18%), Positives = 107/264 (40%), Gaps = 34/264 (12%)
Query: 221 PSLSAMIVNKYRLRGNIRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQN 280
P ++ +++ L ++ +L MGC AG+ ++ A L + + +VV TE + +
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 281 WYFGNKKSMLIPNCLFRVGCSAVLLS-NKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQ 339
+ + ++ + +F G +A ++ N R + + I R+ ++ + +
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAMVWDLEK 250
Query: 340 EQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKP 399
E + G L + + G ++ F TL+ K +
Sbjct: 251 EGWNLG-----LDASIPIVIGSGIEA-----------------FVDTLLDKAKLQTSTAI 288
Query: 400 YIPDFKLAFDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAY 459
D + F IH GG++++ +E +L + P + + H +GN SS+S+ + + +
Sbjct: 289 SAKDCE-----FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDH 343
Query: 460 IEAKGRMCRGHRVWQI--AFGSGF 481
R + + I AFG G
Sbjct: 344 ----ARKSKSLPTYSISLAFGPGL 363
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 411 FCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK----GRM 466
+ H G A+ID +E LQL P + +R +GN S+++++ + + + GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 467 CRGHRV-WQI--AFGSGFKCNSAVWQALQNVKPSHH 499
G + W + FG G + V +++ P HH
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM----PLHH 391
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 11/96 (11%)
Query: 411 FCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK----GRM 466
+ H G A+ID +E LQL P + +R +GN S+++++ + + + GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 467 CRGHRV-WQI--AFGSGFKCNSAVWQALQNVKPSHH 499
G + W + FG G + V +++ P HH
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM----PLHH 391
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 117/310 (37%), Gaps = 47/310 (15%)
Query: 180 AAREEAEQVM-YGALDNLFSNTNVNPKDIGILVVNC-SLFNPTPSLSAMIVNKYRLRGNI 237
A +E QVM A + V+P +I ++VV+ + F TP LS I ++ +
Sbjct: 54 AEPDETIQVMGVAASRRALEHAGVDPAEIDLVVVSTMTNFVHTPPLSVAIAHE------L 107
Query: 238 RSYNLGGMGCSAGVI----AVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPN 293
+ N GG SA A+ +A D ++ + + +VV+TE +T ++ +
Sbjct: 108 GADNAGGFDLSAACAGFCHALSIAADAVESGGSRHVLVVATERMTDVIDLADRSL----S 163
Query: 294 CLFRVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQD-DQGKTGVSLS 352
LF G A ++ + I +G D ++ DQ S+
Sbjct: 164 FLFGDGAGAAVV---------GPSDVPGIGPVVRGIDGTGLGSLHMSSSWDQYVEDPSVG 214
Query: 353 KELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPYIPDFKLAFDHFC 412
+ + + G K V+P + + L A L + L F
Sbjct: 215 RPALVMDG---KRVFRWAVADVVPAAREALEVAGLTVGDLVA----------------FV 255
Query: 413 IHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRV 472
H +ID L L + P HV SR GNTSS+S+ L + G + G
Sbjct: 256 PHQANLRIIDVLVDRLGV-PEHVVVSR-DAEDTGNTSSASVALALDRLVRSGAVPGGGPA 313
Query: 473 WQIAFGSGFK 482
I FG+G
Sbjct: 314 LMIGFGAGLS 323
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 69/308 (22%), Positives = 119/308 (38%), Gaps = 42/308 (13%)
Query: 179 AAAREEAEQVMYGALDNLFSNTNVNPKDI-GILVVNCSLFNPTPSLSAMIVNKYRLRGNI 237
AA E A + A SN ++ DI G++V + F TP + M+ +G I
Sbjct: 55 AADDESAASMATEACRRALSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAKG-I 113
Query: 238 RSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNC-LF 296
++L G + A+ A D+++ +VV TE ++ ++ NC +F
Sbjct: 114 LGFDLS-AGAAGFGYALGAAADMIRGGGAATMLVVGTEKLSPTIDMYDRG-----NCFIF 167
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELM 356
G +AV++ + I T G+D + + Q+ D ++ ++
Sbjct: 168 ADGAAAVVVG---------ETPFQGIGPTVAGSDGEQADAIRQDID-----WITFAQ--- 210
Query: 357 AIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNR--NVKPYIPDFKLAFDHFCIH 414
N + P V + +A + + R + PD D F H
Sbjct: 211 ---------NPSGPRPFVRLEGPAVFRWAAFKMGDVGRRAMDAAGVRPD---QIDVFVPH 258
Query: 415 AGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQ 474
+ + L KNLQL P V A+ + GNTS++SI +A + G G
Sbjct: 259 QANSRINELLVKNLQLRPDAVVAN--DIEHTGNTSAASIPLAMAELLTTGAAKPGDLALL 316
Query: 475 IAFGSGFK 482
I +G+G
Sbjct: 317 IGYGAGLS 324
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLH-RFGNTSSSSIWYELAYIEAKGRM 466
D F IH R K+ + P V MT+ GN +S+ L+ ++ GR+
Sbjct: 266 LDQFVIHQVSRPHTAAFVKSFGIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELGRL 321
Query: 467 CRGHRVWQIAFGSGFKCNSA--VW 488
+G R+ + GSG C+ A VW
Sbjct: 322 KKGDRIALLGIGSGLNCSMAEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLH-RFGNTSSSSIWYELAYIEAKGRM 466
D F IH R K+ + P V MT+ GN +S+ L+ ++ GR+
Sbjct: 265 LDQFVIHQVSRPHTAAFVKSFGIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELGRL 320
Query: 467 CRGHRVWQIAFGSGFKCNSA--VW 488
+G R+ + GSG C+ A VW
Sbjct: 321 KKGDRIALLGIGSGLNCSMAEVVW 344
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLH-RFGNTSSSSIWYELAYIEAKGRM 466
D F IH R K+ + P V MT+ GN +S+ L+ ++ GR+
Sbjct: 259 LDQFVIHQVSRPHTAAFVKSFGIDPAKV----MTIFGEHGNIGPASVPIVLSKLKELGRL 314
Query: 467 CRGHRVWQIAFGSGFKCNSA--VW 488
+G R+ + GSG C+ A VW
Sbjct: 315 KKGDRIALLGIGSGLNCSMAEVVW 338
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 411 FCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGH 470
F H +ID + L L E + + R+GNTS++SI L GR+ G
Sbjct: 243 FVPHQANLRIIDAARERLGL---PWERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGD 299
Query: 471 RVWQIAFGSGFKCNSAV 487
V ++FG+G +AV
Sbjct: 300 HVLLVSFGAGLTWAAAV 316
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 440 MTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGFKCNSAV 487
+TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 290 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 337
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 440 MTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGFKCNSAV 487
+TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 440 MTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGFKCNSAV 487
+TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 440 MTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGFKCNSAV 487
+TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 440 MTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGFKCNSAV 487
+TL R GNTS++S+ L GR+ G V AFG GF SA+
Sbjct: 267 VTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSAL 314
>pdb|3EUQ|A Chain A, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|B Chain B, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|C Chain C, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
pdb|3EUQ|D Chain D, X-Ray Structural Of A Type Iii Pentaketide Synthase From
Neurospora Crassa
Length = 379
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK--GR 465
FD + +H GG ++ E + L P H+ AS GN+SS++I+ L + K
Sbjct: 291 FD-WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 349
Query: 466 MCRGHRVWQIAFGSGF 481
+ G +V + G F
Sbjct: 350 LAPGGKVKEYVVGCAF 365
>pdb|3EUO|A Chain A, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUO|B Chain B, Crystal Structure Of A Fungal Type Iii Polyketide
Synthase, Oras
pdb|3EUT|A Chain A, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|B Chain B, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|C Chain C, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
pdb|3EUT|D Chain D, X-Ray Crystal Structure Of A Type Iii Pentaketide Synthase
From Neurospora Crassa
Length = 379
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK--GR 465
FD + +H GG ++ E + L P H+ AS GN+SS++I+ L + K
Sbjct: 291 FD-WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 349
Query: 466 MCRGHRVWQIAFGSGF 481
+ G +V + G F
Sbjct: 350 LAPGGKVKEYVVGCAF 365
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 408 FDHFCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAK--GR 465
FD + +H GG ++ E + L P H+ AS GN+SS++I+ L + K
Sbjct: 320 FD-WAMHPGGATILSGAESAMGLTPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDA 378
Query: 466 MCRGHRVWQIAFGSGF 481
+ G +V + G F
Sbjct: 379 LAPGGKVKEYVVGCAF 394
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 66/312 (21%), Positives = 121/312 (38%), Gaps = 44/312 (14%)
Query: 178 MAAAREEAEQVMYGALDNLFSNTNVNPKDIG-ILVVNCSLFNPTPSLSAMIVNKYRLRGN 236
+AA E + + A N +NP+DI I+V S + PS + + +
Sbjct: 51 IAAEDETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNIDDA 110
Query: 237 IRSYNLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNCLF 296
I S++L + V A+ +A ++ A+V+ ++ ++ ++ +++ LF
Sbjct: 111 I-SFDLAA-AXTGFVYALSVADQFIRAGKVKKALVIGSDLNSRKLDETDRSTVV----LF 164
Query: 297 RVGCSAVLLSNKRKDRRQAKYRLVHIVRTHKGAD-DKAFRCVYQEQDDQGKTGVSLSKEL 355
G AV+L ++ I+ TH A DK V Q + G+ S +
Sbjct: 165 GDGAGAVILEASEQE---------GIISTHLHASADKNNALVLA----QPERGIEKSGYI 211
Query: 356 MAIAGGALKTNITTLGPVVLPVSEQLLFFATLVIKKLFNRNVKPYIPDFKLAFDHFCIHA 415
K + L VV TL+ L +++ +P H
Sbjct: 212 EMQGNETFKLAVRELSNVVEE---------TLLANNLDKKDLDWLVP-----------HQ 251
Query: 416 GGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQI 475
+I K L++ V +TL ++ N S++++ L GR+ RG +
Sbjct: 252 ANLRIITATAKKLEMDMSQV---VVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLE 308
Query: 476 AFGSGFKCNSAV 487
AFG G+ SA+
Sbjct: 309 AFGGGWTWGSAL 320
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 61/314 (19%), Positives = 131/314 (41%), Gaps = 60/314 (19%)
Query: 183 EEAEQVMYGALDNLFSNTNVNPKDIGILVVNCSLFN-PTPSLSAMIVNKYRL-RGNIRSY 240
++ + Y A ++ + P+DI +++V + + P P+++ M+ + RL G + S
Sbjct: 49 QDTSDLAYEASVKAIADAGIQPEDIDMIIVATATGDMPFPTVANML--QERLGTGKVASM 106
Query: 241 NLGGMGCSAGVIAVDLAKDLLQVNWNTYAVVVSTENITQNWYFGNKKSMLIPNCLFRVGC 300
+ CS + ++ AK +Q +VV + +++ ++ + + LF G
Sbjct: 107 DQLA-ACSGFMYSMITAKQYVQSGDYHNILVVGADKLSKITDLTDRSTAV----LFGDGA 161
Query: 301 SAVLLSNKRKDRRQAKYRLVHIVRTHKGADDKAFRCVYQEQDDQGKTGVSLSKELMAIAG 360
AV++ + R Y + G+D + +Y ++D
Sbjct: 162 GAVIIGEVSEGRGIISYEM--------GSDGTGGKHLYLDKDT----------------- 196
Query: 361 GALKTNITTLGPVVLPVSEQLLFFA-TLVIKK--LFNRNVKPYIPDFKLAFDHFCIHAGG 417
G LK N G V + +++ A T V++K L + ++ +IP H
Sbjct: 197 GKLKMN----GREVFKFAVRIMGDASTRVVEKANLTSDDIDLFIP-----------H--- 238
Query: 418 RAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAF 477
+A I +E + L + + ++++++GNTS++SI + G++ + + F
Sbjct: 239 QANIRIMESARERLGISKDKMSVSVNKYGNTSAASIPLSIDQELKNGKLKDDDTIVLVGF 298
Query: 478 GSGFKCNSAVWQAL 491
G G W A+
Sbjct: 299 GGGL-----TWGAM 307
>pdb|4EWP|A Chain A, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|B Chain B, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|C Chain C, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|D Chain D, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|E Chain E, Crystal Structure Of Fabh From Micrococcus Luteus
pdb|4EWP|F Chain F, Crystal Structure Of Fabh From Micrococcus Luteus
Length = 350
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 411 FCIHAGGRAVIDELEKNLQLLPVHVEASRMTLHRFGNTSSSSIWYELAYIEAKGRMCRGH 470
F H +IDE K L+L P V +R + GNTS++SI + + + G
Sbjct: 272 FIPHQANMRIIDEFAKQLKL-PESVVVAR-DIADAGNTSAASIPLAMHRLLEENPELSGG 329
Query: 471 RVWQIAFGSGF 481
QI FG+G
Sbjct: 330 LALQIGFGAGL 340
>pdb|3ITQ|A Chain A, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
pdb|3ITQ|B Chain B, Crystal Structure Of A Prolyl 4-Hydroxylase From Bacillus
Anthracis
Length = 216
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 119 YKPPHNLKASYDKFMEHSKLTGDFDESSLEFQRKILERSGLGEETYFPEAMHAIPPKPSM 178
Y+ KA YD F EHS+ + S+L +E G ET+FP+ ++ P+
Sbjct: 118 YEVDQQYKAHYDYFAEHSRSAANNRISTLVXYLNDVEEGG---ETFFPKLNLSVHPRKGX 174
Query: 179 A 179
A
Sbjct: 175 A 175
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 440 MTLHRFGNTSSSSIWYELAYIEAKGRMCRGHRVWQIAFGSGFKCNSAV 487
+T+ GNTS++SI L GR+ RG V G GF ++V
Sbjct: 283 VTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASV 330
>pdb|2JI4|A Chain A, Human Phosphoribosylpyrophosphate Synthetase - Associated
Protein 41 (Pap41)
Length = 379
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 16/140 (11%)
Query: 138 LTGDFDESSLEFQRKILERSG--LGEETYFPEAMHAIPPKPSMAAAREEAEQVMYGALDN 195
+ + + S +E +KI ER G +G+ + E P + + +E +
Sbjct: 33 FSANSNSSCMELSKKIAERLGVEMGKVQVYQE-----PNRETRVQIQESVRGKDVFIIQT 87
Query: 196 LFSNTNVNPKDIGILVVNC------SLFNPTPSLSAMIVNKYRLRGNIRSYNLGGMGCSA 249
+ + N ++ I+V C S+ P K R RG+I S L M C A
Sbjct: 88 VSKDVNTTIMELLIMVYACKTSCAKSIIGVIPYFPYSKQCKMRKRGSIVSKLLASMMCKA 147
Query: 250 G---VIAVDLAKDLLQVNWN 266
G +I +DL + +Q +N
Sbjct: 148 GLTHLITMDLHQKEIQGFFN 167
>pdb|3P9V|A Chain A, High Resolution Crystal Structure Of Protein Maqu_3174
From Marinobacter Aquaeolei, Northeast Structural
Genomics Consortium Target Mqr197
pdb|3P9V|B Chain B, High Resolution Crystal Structure Of Protein Maqu_3174
From Marinobacter Aquaeolei, Northeast Structural
Genomics Consortium Target Mqr197
Length = 161
Score = 28.9 bits (63), Expect = 6.4, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 32/80 (40%)
Query: 329 ADDKAFRCVYQEQDDQGKTGVSLSKELMAIAGGALKTNITTLGPVVLPVSEQLLFFATLV 388
AD +A + + +G VS S L A A T + +P+ L + V
Sbjct: 74 ADKEAGKITWSPIKGEGNGVVSGSWTLSAKGDNATAVKFQTSAELTVPLPSLLKLAISPV 133
Query: 389 IKKLFNRNVKPYIPDFKLAF 408
IK FN V Y + K AF
Sbjct: 134 IKHEFNSLVDTYXANLKKAF 153
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,519,838
Number of Sequences: 62578
Number of extensions: 617240
Number of successful extensions: 1640
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1570
Number of HSP's gapped (non-prelim): 84
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)