Citrus Sinensis ID: 010194
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | 2.2.26 [Sep-21-2011] | |||||||
| Q494P0 | 535 | Probable inorganic phosph | yes | no | 0.980 | 0.943 | 0.786 | 0.0 | |
| Q96303 | 534 | Inorganic phosphate trans | no | no | 0.970 | 0.936 | 0.785 | 0.0 | |
| O48639 | 521 | Probable inorganic phosph | no | no | 0.982 | 0.971 | 0.768 | 0.0 | |
| Q8VYM2 | 524 | Inorganic phosphate trans | no | no | 0.976 | 0.959 | 0.764 | 0.0 | |
| Q01MW8 | 538 | Probable inorganic phosph | N/A | no | 0.976 | 0.934 | 0.75 | 0.0 | |
| Q8H074 | 541 | Probable inorganic phosph | yes | no | 0.984 | 0.937 | 0.740 | 0.0 | |
| Q8H6H2 | 538 | Probable inorganic phosph | no | no | 0.976 | 0.934 | 0.746 | 0.0 | |
| Q8GYF4 | 542 | Probable inorganic phosph | no | no | 0.996 | 0.946 | 0.742 | 0.0 | |
| Q8H6H0 | 534 | Inorganic phosphate trans | no | no | 0.974 | 0.940 | 0.738 | 0.0 | |
| Q8H6G8 | 541 | Probable inorganic phosph | no | no | 0.980 | 0.933 | 0.760 | 0.0 |
| >sp|Q494P0|PHT17_ARATH Probable inorganic phosphate transporter 1-7 OS=Arabidopsis thaliana GN=PHT1-7 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/520 (78%), Positives = 456/520 (87%), Gaps = 15/520 (2%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA DQL VLNALDVAKTQWYHFTAI+IAGMGFFTDAYDLFCISLVTKLLGRIYY+ +GS+
Sbjct: 1 MAGDQLNVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSE 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NV++AVNGVA CGTLAGQLFFGWLGDK+GRK+VYGMTLM+MV+CS+ASGLSFG
Sbjct: 61 KPGTLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
PK VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 SNPKTVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+ AIIVSAAF+A FPAP Y + ASTVP+ADY+WRIILM GA+PA +TYY R KMPETA
Sbjct: 181 IFAIIVSAAFEAKFPAPTYQIDALASTVPQADYVWRIILMVGALPAAMTYYSRSKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT 300
RYTALVAK+AK AA++MSKVLQVE+EAEQ+ E + N FGLFS +F++RHGLHL+GTT
Sbjct: 241 RYTALVAKDAKLAASNMSKVLQVEIEAEQQGTEDK--SNSFGLFSKEFMKRHGLHLLGTT 298
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
TWFLLD+A+YSQNLFQKDIF+AIGWIP A+TMNAI+EV+KIARAQTLIALCSTVPGYWF
Sbjct: 299 STWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGYWF 358
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TVA ID IGRFAIQ+MGFFFMTVFMFALAIPY HWT ++RIGFV +YSLTFFF+NFGPN
Sbjct: 359 TVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYDHWTHKENRIGFVAMYSLTFFFANFGPN 418
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-------------GV 467
TTFVVPAEIFPAR RSTCHGISAASGK GA+VGAFGFLYLA + GV
Sbjct: 419 ATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQSPDKTKTEHGYPPGIGV 478
Query: 468 KKALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEK 507
K +L++LG N LGM+FT LVPESKGKSLEEMSGE E+
Sbjct: 479 KNSLIVLGVVNLLGMVFTLLVPESKGKSLEEMSGENEQND 518
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High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q96303|PHT14_ARATH Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 845 bits (2182), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/517 (78%), Positives = 461/517 (89%), Gaps = 17/517 (3%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA++QLQVLNALDVAKTQWYHFTAI+IAGMGFFTDAYDLFCISLVTKLLGRIYY+ EG+
Sbjct: 1 MAREQLQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVEGAQ 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NVA+AVNGVA CGTLAGQLFFGWLGDK+GRK+VYGMTLM+MV+CS+ASGLSFG
Sbjct: 61 KPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
EPKAVM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF++AVFAMQGFGI++GG
Sbjct: 121 HEPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFVSAVFAMQGFGIMAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+ AII+S+AF+A FP+P Y+ + ST+P+AD +WRIILM GAIPA +TYY R KMPETA
Sbjct: 181 IFAIIISSAFEAKFPSPAYADDALGSTIPQADLVWRIILMAGAIPAAMTYYSRSKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ---EKGKNDFGLFSAKFVRRHGLHLI 297
RYTALVAK+AKQAA+DMSKVLQVE+E EQ+K+E+ EK K FGLFS +F+ RHGLHL+
Sbjct: 241 RYTALVAKDAKQAASDMSKVLQVEIEPEQQKLEEISKEKSKA-FGLFSKEFMSRHGLHLL 299
Query: 298 GTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPG 357
GTT TWFLLD+A+YSQNLFQKDIF+AIGWIP A++MNAI+EV+KIARAQTLIALCSTVPG
Sbjct: 300 GTTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQSMNAIQEVFKIARAQTLIALCSTVPG 359
Query: 358 YWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417
YWFTVA ID IGRFAIQ+MGFFFMTVFMFALAIPY+HWT ++RIGFV++YSLTFFF+NF
Sbjct: 360 YWFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYNHWTHKENRIGFVIMYSLTFFFANF 419
Query: 418 GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------------ 465
GPN TTFVVPAEIFPAR RSTCHGISAASGK GA+VGAFGFLYLA
Sbjct: 420 GPNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQNPDKDKTDAGYPPG 479
Query: 466 -GVKKALLILGGANFLGMLFTFLVPESKGKSLEEMSG 501
GV+ +L++LG NFLG+LFTFLVPESKGKSLEEMSG
Sbjct: 480 IGVRNSLIVLGVVNFLGILFTFLVPESKGKSLEEMSG 516
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High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate. Arabidopsis thaliana (taxid: 3702) |
| >sp|O48639|PHT13_ARATH Probable inorganic phosphate transporter 1-3 OS=Arabidopsis thaliana GN=PHT1-3 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/522 (76%), Positives = 447/522 (85%), Gaps = 16/522 (3%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA QL VL ALDVAKTQ YHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGR+YY+ S
Sbjct: 1 MADQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRLYYFNPTSA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP +VA+AVNGVALCGTLAGQLFFGWLGDK+GRK+VYG+TL+MM++CS+ASGLS G
Sbjct: 61 KPGSLPPHVAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLIMMILCSVASGLSLG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GIL+GG
Sbjct: 121 NSAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VA+ VS+ F FP+P Y + ST P+ADYIWRII+MFGA+PA LTYYWRMKMPETA
Sbjct: 181 FVALAVSSIFDKKFPSPTYEQDRFLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQE--KGKNDFGLFSAKFVRRHGLHLIG 298
RYTALVAKN KQA ADMSKVLQ +LE E E+VE + K ++GLFS +F+RRHGLHL+G
Sbjct: 241 RYTALVAKNIKQATADMSKVLQTDLELE-ERVEDDVKDPKKNYGLFSKEFLRRHGLHLLG 299
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
TT TWFLLD+A+YSQNLFQKDIF+AIGWIPKA TMNAI EV+KIARAQTLIALCSTVPGY
Sbjct: 300 TTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPGY 359
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVA ID IGRFAIQLMGFF MTVFMFA+A PY+HW LPD+RIGFVV+YSLTFFF+NFG
Sbjct: 360 WFTVAFIDIIGRFAIQLMGFFMMTVFMFAIAFPYNHWILPDNRIGFVVMYSLTFFFANFG 419
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------------- 465
PN TTF+VPAEIFPARLRSTCHGISAA+GKAGAIVGAFGFLY A
Sbjct: 420 PNATTFIVPAEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPGI 479
Query: 466 GVKKALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEK 507
GVK +L++LG NF+GMLFTFLVPE KGKSLEE+SGEAE +K
Sbjct: 480 GVKNSLIMLGVINFVGMLFTFLVPEPKGKSLEELSGEAEVDK 521
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High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8VYM2|PHT11_ARATH Inorganic phosphate transporter 1-1 OS=Arabidopsis thaliana GN=PHT1-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 818 bits (2114), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/519 (76%), Positives = 446/519 (85%), Gaps = 16/519 (3%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA+ QL VL ALDVAKTQ YHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGRIYY+ S
Sbjct: 1 MAEQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP +VA+AVNGVALCGTL+GQLFFGWLGDK+GRK+VYG+TL+MM++CS+ASGLSFG
Sbjct: 61 KPGSLPPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLVMMILCSVASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
E K VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GIL+GG
Sbjct: 121 HEAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VA+ VS+ F FPAP Y+ N A ST P+ DYIWRII+MFGA+PA LTYYWRMKMPETA
Sbjct: 181 FVALAVSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQE--KGKNDFGLFSAKFVRRHGLHLIG 298
RYTALVAKN KQA ADMSKVLQ ++E E E+VE + K ++GLFS +F+RRHGLHL+G
Sbjct: 241 RYTALVAKNIKQATADMSKVLQTDIELE-ERVEDDVKDPKQNYGLFSKEFLRRHGLHLLG 299
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
TT TWFLLD+A+YSQNLFQKDIF+AIGWIPKA TMNA EV++IARAQTLIALCSTVPGY
Sbjct: 300 TTSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGY 359
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVA ID IGRF IQL GFF MTVFMFA+A PY+HW P++RIGFVV+YSLTFFF+NFG
Sbjct: 360 WFTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFANFG 419
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------------- 465
PN TTF+VPAEIFPARLRSTCHGISAA+GKAGAIVGAFGFLY A +
Sbjct: 420 PNATTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYPPGI 479
Query: 466 GVKKALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAE 504
GVK +L++LG NF+GMLFTFLVPE KGKSLEE+SGEAE
Sbjct: 480 GVKNSLIMLGVLNFIGMLFTFLVPEPKGKSLEELSGEAE 518
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High-affinity transporter for external inorganic phosphate. Acts as a H(+):phosphate symporter in both low- and high-Pi conditions. Confers sensitivity to arsenate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q01MW8|PHT14_ORYSI Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. indica GN=PHT1-4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/516 (75%), Positives = 440/516 (85%), Gaps = 13/516 (2%)
Query: 5 QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGT 64
+L+VLNALD AKTQWYHFTAIVIAGMGFFTDAYDLF ISLVTKLLGRIYY+ S SPG+
Sbjct: 4 ELKVLNALDSAKTQWYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYFNPASKSPGS 63
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
LP NV++AVNGVA CGTLAGQLFFGWLGDKMGRK+VYGMTLM+MVIC LASGLSFG K
Sbjct: 64 LPPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICCLASGLSFGSSAK 123
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
VM TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGFG L+GG+VAI
Sbjct: 124 GVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAI 183
Query: 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTA 244
IVSAAFKA F AP Y + A STVP+ADY WRI+LMFGAIPALLTYYWRMKMPETARYTA
Sbjct: 184 IVSAAFKARFDAPAYRDDRAGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTA 243
Query: 245 LVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWF 304
LVAKNAKQAAADM++VL VE+ EQEK ++ + FGLFS +F+RRHG HL+GTTV WF
Sbjct: 244 LVAKNAKQAAADMTQVLNVEIVEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVCWF 303
Query: 305 LLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVAL 364
+LD+A+YS NLFQKDI+TA+ W+PKA TM+A+EE++KI+RAQTL+ALC T+PGYWFTV
Sbjct: 304 VLDIAFYSSNLFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVFF 363
Query: 365 IDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424
ID IGRF IQL GFFFMT FM LA+PYHHWT P + IGFVV+Y+ TFFF+NFGPN+TTF
Sbjct: 364 IDIIGRFVIQLGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTF 423
Query: 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-------------GVKKAL 471
+VPAEIFPARLRSTCHGISAA+GKAGAIVG+FGFLY A ++ GV+ +L
Sbjct: 424 IVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRNSL 483
Query: 472 LILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEK 507
L G N +G FTFLVPESKGKSLEE+SGE E++
Sbjct: 484 FFLAGCNVIGFFFTFLVPESKGKSLEELSGENEDDD 519
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. indica (taxid: 39946) |
| >sp|Q8H074|PT112_ORYSJ Probable inorganic phosphate transporter 1-12 OS=Oryza sativa subsp. japonica GN=PHT1-12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 386/521 (74%), Positives = 443/521 (85%), Gaps = 14/521 (2%)
Query: 3 KDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSP 62
QLQVLNALD AKTQWYHFTAI++AGMGFFTDAYDLFCISLVTKLLGRIYY S +P
Sbjct: 5 DQQLQVLNALDAAKTQWYHFTAIIVAGMGFFTDAYDLFCISLVTKLLGRIYYTDPASPTP 64
Query: 63 GTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKE 122
G+LP N+A+AVNGVALCGTL+GQLFFGWLGDK+GRK VYGMTL++MVICS+ASGLSF
Sbjct: 65 GSLPPNIAAAVNGVALCGTLSGQLFFGWLGDKLGRKSVYGMTLLLMVICSIASGLSFSHT 124
Query: 123 PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182
P +VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG+V
Sbjct: 125 PTSVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGVV 184
Query: 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242
+ +SA F+A FPAP Y N AASTVP+ADY+WRIILM GA+PA+LTYYWRMKMPETARY
Sbjct: 185 TLAMSAGFQAAFPAPAYEVNAAASTVPQADYVWRIILMLGALPAILTYYWRMKMPETARY 244
Query: 243 TALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVT 302
TALVAK+AKQA++DM+KVLQVE+E E+EK++ D+GLFSA+F +RHG HL+GT T
Sbjct: 245 TALVAKDAKQASSDMAKVLQVEIEVEEEKLQDITRGRDYGLFSARFAKRHGAHLLGTAAT 304
Query: 303 WFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTV 362
WFL+DVAYYSQNLFQKDIFT+I WIPKA+TM+ +EEV++I+RAQTLIALC TVPGYWFTV
Sbjct: 305 WFLVDVAYYSQNLFQKDIFTSIHWIPKARTMSELEEVFRISRAQTLIALCGTVPGYWFTV 364
Query: 363 ALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTT 422
LID IGRF IQL+GF MT FM LAIPYHHWT+P +++ FV LY TFFF+NFGPN T
Sbjct: 365 FLIDIIGRFKIQLLGFAGMTAFMLGLAIPYHHWTMPGNQVIFVFLYGFTFFFANFGPNAT 424
Query: 423 TFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-------------GVKK 469
TF+VPAEIFPARLRSTCHGISAASGKAGAI+GAFGFLY A GV+
Sbjct: 425 TFIVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFLYAAQPQDKAHVDAGYKPGIGVRN 484
Query: 470 ALLILGGANFLGMLFTF-LVPESKGKSLEEMSGEAEEEKGT 509
AL +L G N +G L T+ LVPESKGKSLEEMSGEA++E+ +
Sbjct: 485 ALFVLAGCNLVGFLMTWMLVPESKGKSLEEMSGEADDEEAS 525
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H6H2|PHT14_ORYSJ Probable inorganic phosphate transporter 1-4 OS=Oryza sativa subsp. japonica GN=PHT1-4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 810 bits (2093), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/516 (74%), Positives = 439/516 (85%), Gaps = 13/516 (2%)
Query: 5 QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGT 64
+L+VLNALD AKTQWYHFTAIVIAGMGFFTDAYDLF ISLVTKLLGRIYY+ S SPG+
Sbjct: 4 ELKVLNALDSAKTQWYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYFNPASKSPGS 63
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
LP NV++AVNGVA CGTLAGQLFFGWLGDKMGRK+VYGMTLM+MVIC LASGLSFG K
Sbjct: 64 LPPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKKVYGMTLMLMVICCLASGLSFGSSAK 123
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
VM TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGFG L+GG+VAI
Sbjct: 124 GVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGNLTGGIVAI 183
Query: 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTA 244
IVSAAFK+ F AP Y + STVP+ADY WRI+LMFGAIPALLTYYWRMKMPETARYTA
Sbjct: 184 IVSAAFKSRFDAPAYRDDRTGSTVPQADYAWRIVLMFGAIPALLTYYWRMKMPETARYTA 243
Query: 245 LVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWF 304
LVAKNAKQAAADM++VL VE+ EQEK ++ + FGLFS +F+RRHG HL+GTTV WF
Sbjct: 244 LVAKNAKQAAADMTQVLNVEIVEEQEKADEVARREQFGLFSRQFLRRHGRHLLGTTVCWF 303
Query: 305 LLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVAL 364
+LD+A+YS NLFQKDI+TA+ W+PKA TM+A+EE++KI+RAQTL+ALC T+PGYWFTV
Sbjct: 304 VLDIAFYSSNLFQKDIYTAVQWLPKADTMSALEEMFKISRAQTLVALCGTIPGYWFTVFF 363
Query: 365 IDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424
ID IGRF IQL GFFFMT FM LA+PYHHWT P + IGFVV+Y+ TFFF+NFGPN+TTF
Sbjct: 364 IDIIGRFVIQLGGFFFMTAFMLGLAVPYHHWTTPGNHIGFVVMYAFTFFFANFGPNSTTF 423
Query: 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-------------GVKKAL 471
+VPAEIFPARLRSTCHGISAA+GKAGAIVG+FGFLY A ++ GV+ +L
Sbjct: 424 IVPAEIFPARLRSTCHGISAAAGKAGAIVGSFGFLYAAQSTDASKTDAGYPPGIGVRNSL 483
Query: 472 LILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEK 507
L G N +G FTFLVPESKGKSLEE+SGE E++
Sbjct: 484 FFLAGCNVIGFFFTFLVPESKGKSLEELSGENEDDD 519
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8GYF4|PHT15_ARATH Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/529 (74%), Positives = 441/529 (83%), Gaps = 16/529 (3%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MAK +VLNALD AKTQ YHFTAIVIAGMGFFTDAYDLF ISLVTKLLGRIYY+ + S
Sbjct: 1 MAKKGKEVLNALDAAKTQMYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYHVDSSK 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NVA+AVNGVA CGTLAGQLFFGWLGDK+GRK+VYG+TLM+MV+CSL SGLSFG
Sbjct: 61 KPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGITLMLMVLCSLGSGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 HSANGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+V++IVS+ F F AP Y +P STVP+ADY+WRI+LMFGAIPALLTYYWRMKMPETA
Sbjct: 181 IVSLIVSSTFDHAFKAPTYEVDPVGSTVPQADYVWRIVLMFGAIPALLTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKN---DFGLFSAKFVRRHGLHLI 297
RYTALVA+N KQAA+DMSKVLQV+L AE+E N FGLF+ +F RRHGLHL+
Sbjct: 241 RYTALVARNTKQAASDMSKVLQVDLIAEEEAQSNSNSSNPNFTFGLFTREFARRHGLHLL 300
Query: 298 GTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPG 357
GTT TWFLLD+AYYS NLFQKDI+TAIGWIP A+TMNAI EV+ +++AQTLIALC TVPG
Sbjct: 301 GTTTTWFLLDIAYYSSNLFQKDIYTAIGWIPAAETMNAIHEVFTVSKAQTLIALCGTVPG 360
Query: 358 YWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417
YWFTVA ID +GRF IQLMGF FMT+FMFALAIPY HW ++RIGF+++YSLT FF+NF
Sbjct: 361 YWFTVAFIDILGRFFIQLMGFIFMTIFMFALAIPYDHWRHRENRIGFLIMYSLTMFFANF 420
Query: 418 GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------------ 465
GPN TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLY A +S
Sbjct: 421 GPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYPPG 480
Query: 466 -GVKKALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEKGTTATV 513
GV+ +LL+L NFLG++FT LVPESKGKSLEE+S E EE+ G V
Sbjct: 481 IGVRNSLLMLACVNFLGIVFTLLVPESKGKSLEEISREDEEQSGGDTVV 529
|
High-affinity transporter for external inorganic phosphate. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8H6H0|PHT16_ORYSJ Inorganic phosphate transporter 1-6 OS=Oryza sativa subsp. japonica GN=PHT1-6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 803 bits (2075), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/520 (73%), Positives = 445/520 (85%), Gaps = 18/520 (3%)
Query: 3 KDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSP 62
+ QL+VL+ALDVAKTQWYHFTAIV+AGMGFFTDAYDLFCISLVTKLLGRIYY +GS SP
Sbjct: 8 QQQLEVLHALDVAKTQWYHFTAIVVAGMGFFTDAYDLFCISLVTKLLGRIYYRVDGSPSP 67
Query: 63 GTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKE 122
GTLP +V+++VNGVA GTL+GQLFFGWLGDK+GRKRVYG+TLM+MV+CSLAS LSFG
Sbjct: 68 GTLPPHVSASVNGVAFVGTLSGQLFFGWLGDKLGRKRVYGITLMLMVLCSLASALSFGHT 127
Query: 123 PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182
P +VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI++GG+V
Sbjct: 128 PTSVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIITGGLV 187
Query: 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242
AI+VSA+F+A FPAP Y +P AST P+AD++WRIILM GA+PA LTYYWR KMPETARY
Sbjct: 188 AILVSASFRAAFPAPPYGEDPVASTPPQADFVWRIILMLGALPAALTYYWRTKMPETARY 247
Query: 243 TALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKG-KNDFGLFSAKFVRRHGLHLIGTTV 301
TALVA NAKQAAADMSKVLQV E + G + FGLFS +FVRRHGLHL+GT+
Sbjct: 248 TALVANNAKQAAADMSKVLQV---VEMRNIGNNGGSRRPFGLFSGEFVRRHGLHLVGTSA 304
Query: 302 TWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFT 361
TW LLD+A+YSQNLFQKDIF+A+GWIPKA TM+A+EE+++IARAQTLIALC TVPGYWFT
Sbjct: 305 TWLLLDIAFYSQNLFQKDIFSAVGWIPKAATMSALEELFRIARAQTLIALCGTVPGYWFT 364
Query: 362 VALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP-DHRIGFVVLYSLTFFFSNFGPN 420
VALID +GRF IQ +GFF MT+FM LA+PYHHWT P + +GF++LY LTFFF+NFGPN
Sbjct: 365 VALIDVVGRFKIQAVGFFMMTLFMLTLALPYHHWTAPGKNHVGFLLLYGLTFFFANFGPN 424
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-------------GV 467
+TTF+VPAEIFPARLR+TCHGISAASGK GAIVG+FGFLYLA + GV
Sbjct: 425 STTFIVPAEIFPARLRATCHGISAASGKLGAIVGSFGFLYLAQSPDRSKTEHGYPPGIGV 484
Query: 468 KKALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEK 507
+ +L +L N LG+LFTFLVPESKGKSLEEMSG+AE ++
Sbjct: 485 RNSLFLLAACNLLGLLFTFLVPESKGKSLEEMSGDAEAQE 524
|
High-affinity transporter for external inorganic phosphate (Pi). Probably involved in Pi uptake, translocation and internal transport throughout the plant. Oryza sativa subsp. japonica (taxid: 39947) |
| >sp|Q8H6G8|PHT18_ORYSJ Probable inorganic phosphate transporter 1-8 OS=Oryza sativa subsp. japonica GN=PHT1-8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/518 (76%), Positives = 447/518 (86%), Gaps = 13/518 (2%)
Query: 3 KDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSP 62
+ LQVL+ALD AKTQWYHFTAIV+AGMGFFTDAYDLFCISLVTKLLGRIYY ++P
Sbjct: 7 QQHLQVLSALDAAKTQWYHFTAIVVAGMGFFTDAYDLFCISLVTKLLGRIYYTDLAKENP 66
Query: 63 GTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKE 122
G+LP NVA+AVNGVA CGTLAGQLFFGWLGDK+GRK VYGMTL+MMVICS+ASGLSF
Sbjct: 67 GSLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKSVYGMTLLMMVICSIASGLSFSHT 126
Query: 123 PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182
P +VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG+V
Sbjct: 127 PTSVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGGIV 186
Query: 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242
+I+S+AF+A FPAP Y + A STV +ADY+WRIILM GA+PALLTYYWRMKMPETARY
Sbjct: 187 TLIISSAFRAGFPAPAYQDDRAGSTVRQADYVWRIILMLGAMPALLTYYWRMKMPETARY 246
Query: 243 TALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKN--DFGLFSAKFVRRHGLHLIGTT 300
TALVAKNAKQAAADMSKVLQVE++ EQ+K+EQ +N FGLFS +F RRHGLHL+GT
Sbjct: 247 TALVAKNAKQAAADMSKVLQVEIQEEQDKLEQMVTRNSSSFGLFSRQFARRHGLHLVGTA 306
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
TWFLLD+A+YSQNLFQKDIFT+I WIPKAKTM+A+EEV++IARAQTLIALC TVPGYWF
Sbjct: 307 TTWFLLDIAFYSQNLFQKDIFTSINWIPKAKTMSALEEVFRIARAQTLIALCGTVPGYWF 366
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TV LID +GRFAIQL+GFF MTVFM LA+PYHHWT + IGFVV+Y+ TFFF+NFGPN
Sbjct: 367 TVFLIDIVGRFAIQLLGFFMMTVFMLGLAVPYHHWTTKGNHIGFVVMYAFTFFFANFGPN 426
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-----------GVKK 469
+TTF+VPAEIFPARLRSTCHGISAA+GKAGAI+G+FGFLY A GV+
Sbjct: 427 STTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGSFGFLYAAQDPHKPDAGYKPGIGVRN 486
Query: 470 ALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAEEEK 507
+L +L G N LG + TFLVPESKGKSLEEMSGEAE++
Sbjct: 487 SLFVLAGCNLLGFICTFLVPESKGKSLEEMSGEAEDDD 524
|
High-affinity transporter for external inorganic phosphate. Oryza sativa subsp. japonica (taxid: 39947) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| 425872910 | 515 | phosphate transporter [Citrus trifoliata | 1.0 | 1.0 | 0.992 | 0.0 | |
| 224112595 | 523 | high affinity inorganic phosphate transp | 0.998 | 0.982 | 0.856 | 0.0 | |
| 255581447 | 517 | inorganic phosphate transporter, putativ | 0.978 | 0.974 | 0.861 | 0.0 | |
| 449432556 | 519 | PREDICTED: probable inorganic phosphate | 1.0 | 0.992 | 0.826 | 0.0 | |
| 384236244 | 523 | phosphate transporter [Cucurbita maxima | 0.982 | 0.967 | 0.847 | 0.0 | |
| 227121298 | 502 | phosphate transporter 6 [Glycine max] | 0.968 | 0.994 | 0.850 | 0.0 | |
| 407316573 | 541 | phosphate transporter [Camellia oleifera | 0.990 | 0.942 | 0.826 | 0.0 | |
| 358248970 | 527 | inorganic phosphate transporter 1-4-like | 0.961 | 0.939 | 0.849 | 0.0 | |
| 359806250 | 527 | inorganic phosphate transporter 1-4-like | 0.961 | 0.939 | 0.845 | 0.0 | |
| 8248034 | 537 | inorganic phosphate transporter [Nicotia | 1.0 | 0.959 | 0.804 | 0.0 |
| >gi|425872910|gb|AFY06659.1| phosphate transporter [Citrus trifoliata] | Back alignment and taxonomy information |
|---|
Score = 1049 bits (2712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/515 (99%), Positives = 513/515 (99%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MAKDQLQVLNALDVAKTQWYHFT IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD
Sbjct: 1 MAKDQLQVLNALDVAKTQWYHFTGIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG
Sbjct: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG
Sbjct: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA
Sbjct: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT 300
RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT
Sbjct: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT 300
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF
Sbjct: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFF+NFGPN
Sbjct: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFANFGPN 420
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL 480
TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL
Sbjct: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL 480
Query: 481 GMLFTFLVPESKGKSLEEMSGEAEEEKGTTATVPV 515
G+LFTFLVPESKGKSLEEMSGEAEEEKGT ATVPV
Sbjct: 481 GLLFTFLVPESKGKSLEEMSGEAEEEKGTAATVPV 515
|
Source: Citrus trifoliata Species: Citrus trifoliata Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112595|ref|XP_002332751.1| high affinity inorganic phosphate transporter [Populus trichocarpa] gi|222833079|gb|EEE71556.1| high affinity inorganic phosphate transporter [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 930 bits (2404), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/524 (85%), Positives = 485/524 (92%), Gaps = 10/524 (1%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA++QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYY+ GSD
Sbjct: 1 MAREQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYQPGSD 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
+PG LP NV+SAVNGVA CGTL+GQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSFG
Sbjct: 61 TPGALPSNVSSAVNGVAFCGTLSGQLFFGWLGDKMGRKRVYGMTLMIMVICSIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K P AVM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 KNPTAVMSTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
MVAI++SAAFKA FPAP + +PA STVP+ADY WRII+MFGAIPA LTYYWRMKMPETA
Sbjct: 181 MVAIVISAAFKAQFPAPAFEVDPAGSTVPQADYAWRIIVMFGAIPAALTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVE---QEKGKNDFGLFSAKFVRRHGLHLI 297
RYTALVAKNAKQAA+DM+KVL+VELE+EQEK+E QEKG NDFGLFS +F RRHGLHL+
Sbjct: 241 RYTALVAKNAKQAASDMAKVLEVELESEQEKIEKMSQEKG-NDFGLFSTQFARRHGLHLL 299
Query: 298 GTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPG 357
GTT TWFLLD+A+YSQNLFQKDIF+AIGWIPK KTMNA+EEV+KIARAQTLIALCSTVPG
Sbjct: 300 GTTTTWFLLDIAFYSQNLFQKDIFSAIGWIPKPKTMNALEEVFKIARAQTLIALCSTVPG 359
Query: 358 YWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417
YWFTVA ID+IGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVV+YSLTFFF+NF
Sbjct: 360 YWFTVAFIDRIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVIYSLTFFFANF 419
Query: 418 GPNTTTFVVPAEIF--PARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILG 475
GPN TTFVVPAEIF ARLRSTCHGISAASGKAGAIVGAFGFLY AD GV+K L++LG
Sbjct: 420 GPNATTFVVPAEIFLLHARLRSTCHGISAASGKAGAIVGAFGFLYAADGIGVRKTLIVLG 479
Query: 476 GANFLGMLFTFLVPESKGKSLEEMSGEAEEEKGTTA----TVPV 515
NFLGM+FTFLVPESKGKSLEEMSGE E+E G+TA TVPV
Sbjct: 480 VINFLGMIFTFLVPESKGKSLEEMSGEGEQENGSTAESRQTVPV 523
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255581447|ref|XP_002531531.1| inorganic phosphate transporter, putative [Ricinus communis] gi|223528848|gb|EEF30850.1| inorganic phosphate transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 910 bits (2353), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/505 (86%), Positives = 467/505 (92%), Gaps = 1/505 (0%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA +QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYY+EGS
Sbjct: 1 MAAEQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYEEGSA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG LP NV++AVNGVA CGTLAGQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSF
Sbjct: 61 DPGALPSNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIASGLSFS 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K P AVM TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 KSPTAVMSTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
MVAI+VSAAFK+ + P Y +P STVP+ DY+WR+ILMFGA+PA LTYYWRMKMPETA
Sbjct: 181 MVAIVVSAAFKSKYHVPSYEIDPLGSTVPQTDYVWRLILMFGALPAALTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT 300
RYTALVAKNAKQAA+DMSKVLQV+ EAEQEKVEQ +G ND+GLFS +F RHGLHL+GTT
Sbjct: 241 RYTALVAKNAKQAASDMSKVLQVDFEAEQEKVEQIRG-NDYGLFSKEFFARHGLHLLGTT 299
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
TWFLLD+A+YSQNLFQKDIFTAIGWIPKAKTMNA+EEVYKI RAQTLIALCSTVPGYWF
Sbjct: 300 STWFLLDIAFYSQNLFQKDIFTAIGWIPKAKTMNALEEVYKIGRAQTLIALCSTVPGYWF 359
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP + IGFV++YSLTFFF+NFGPN
Sbjct: 360 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPHNHIGFVIMYSLTFFFANFGPN 419
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL 480
TTFVVPAEIFPARLRSTCHGISAASGKAGA+VGAFGFLY AD GV+ L+ILGG NFL
Sbjct: 420 ATTFVVPAEIFPARLRSTCHGISAASGKAGAMVGAFGFLYAADGIGVRNTLIILGGINFL 479
Query: 481 GMLFTFLVPESKGKSLEEMSGEAEE 505
GMLFT LVPESKGKSLEEMSGEAEE
Sbjct: 480 GMLFTLLVPESKGKSLEEMSGEAEE 504
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449432556|ref|XP_004134065.1| PREDICTED: probable inorganic phosphate transporter 1-7-like [Cucumis sativus] gi|449487457|ref|XP_004157636.1| PREDICTED: probable inorganic phosphate transporter 1-7-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 905 bits (2339), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/519 (82%), Positives = 473/519 (91%), Gaps = 4/519 (0%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA++QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGRIY++KEGSD
Sbjct: 1 MAREQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYFHKEGSD 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG LP N+A+A+NGVA CGTL+GQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSF
Sbjct: 61 KPGELPSNIAAAINGVAFCGTLSGQLFFGWLGDKMGRKRVYGMTLMLMVICSVASGLSFS 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
P +V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 STPTSVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+VAIIVS+AF A +PAP Y NP ASTVP+ADY+WRII++FGA PALLTYYWRMKMPETA
Sbjct: 181 VVAIIVSSAFDAKYPAPSYQENPTASTVPQADYVWRIIVIFGAFPALLTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT 300
RYTALVAKNAKQAAADMSKVLQVELE+EQEK+++ K KNDFGLF+ F+RRHGLHL+GTT
Sbjct: 241 RYTALVAKNAKQAAADMSKVLQVELESEQEKIDEGKSKNDFGLFTMSFLRRHGLHLLGTT 300
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
TWFLLD+A+YSQNLFQKDIFTAIGW+P AKTMNAIEEV++IARAQTLIALCSTVPGYWF
Sbjct: 301 STWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMNAIEEVFRIARAQTLIALCSTVPGYWF 360
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TVALID++GRFAIQLMGFFFMTVFMFALAIPYHHWTL +RIGFVV+YSLTFFF+NFGPN
Sbjct: 361 TVALIDRMGRFAIQLMGFFFMTVFMFALAIPYHHWTLEANRIGFVVMYSLTFFFANFGPN 420
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL 480
TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGF Y GVKK L+ILG N L
Sbjct: 421 ATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFQYAEKGFGVKKTLIILGVVNAL 480
Query: 481 GMLFTFLVPESKGKSLEEMSGEAEEEKGTTA----TVPV 515
GM FT LVPESKGKSLEEMSGE +++ + TVPV
Sbjct: 481 GMFFTLLVPESKGKSLEEMSGEGRDDEAQSTIESRTVPV 519
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|384236244|gb|AFH74431.1| phosphate transporter [Cucurbita maxima x Cucurbita moschata] | Back alignment and taxonomy information |
|---|
Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/506 (84%), Positives = 467/506 (92%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA++QLQVL+ALDVAKTQWYHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGRIYY+K+GSD
Sbjct: 1 MAREQLQVLDALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYHKQGSD 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG LP NVA+AVNGVA CGTL+GQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSF
Sbjct: 61 KPGELPGNVAAAVNGVAFCGTLSGQLFFGWLGDKMGRKRVYGMTLMLMVICSVASGLSFS 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
P +V+ TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 SSPTSVVATLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+VAIIVSAAF A +PAP Y NP AST+P+ADY+WRII++FGA PALLTYYWRMKMPETA
Sbjct: 181 VVAIIVSAAFDAKYPAPSYQENPNASTIPQADYVWRIIVIFGAFPALLTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTT 300
RYTALVAKNAKQAAADMSKVLQVELE+EQ+K+E+ K KN+FGLF F+RRHGLHL+GTT
Sbjct: 241 RYTALVAKNAKQAAADMSKVLQVELESEQDKIEEGKSKNEFGLFPKSFLRRHGLHLLGTT 300
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
TWFLLD+A+YSQNLFQKDIFTAIGW+P AKTMNAIEEV+KIARAQTLIALCSTVPGYWF
Sbjct: 301 STWFLLDIAFYSQNLFQKDIFTAIGWLPPAKTMNAIEEVFKIARAQTLIALCSTVPGYWF 360
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TVALID +GRFAIQLMGFFFMTVFMFALAIPY+HWTLPDHRIGFVV+YSLTFFF+NFGPN
Sbjct: 361 TVALIDVMGRFAIQLMGFFFMTVFMFALAIPYNHWTLPDHRIGFVVMYSLTFFFANFGPN 420
Query: 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL 480
TTFVVPAEIFPARLRSTCHGISAASGKAGAI+GAFGF GVKK L+ILG N L
Sbjct: 421 ATTFVVPAEIFPARLRSTCHGISAASGKAGAIIGAFGFQAAEKAFGVKKTLIILGVVNAL 480
Query: 481 GMLFTFLVPESKGKSLEEMSGEAEEE 506
G LFT LVPESKGKSLEEMSGEA EE
Sbjct: 481 GALFTLLVPESKGKSLEEMSGEAGEE 506
|
Source: Cucurbita maxima x Cucurbita moschata Species: Cucurbita maxima x Cucurbita moschata Genus: Cucurbita Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|227121298|gb|ACP19339.1| phosphate transporter 6 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 899 bits (2322), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/502 (85%), Positives = 469/502 (93%), Gaps = 3/502 (0%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA+DQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYY+ EG D
Sbjct: 1 MARDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYF-EGHD 59
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP NV++A+NGVA CGTLAGQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSFG
Sbjct: 60 KPGSLPSNVSAAINGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIASGLSFG 119
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K+PKAVM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 120 KDPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 179
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VAI+VS+AFKA +PAP + NP STVP+ADY+WRIILMFGA+PALLTYYWRMKMPETA
Sbjct: 180 TVAIVVSSAFKALYPAPAFQVNPVLSTVPQADYVWRIILMFGALPALLTYYWRMKMPETA 239
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ--EKGKNDFGLFSAKFVRRHGLHLIG 298
RYTALVAKNAKQAAADMSKVLQVE+EAEQEKVEQ + N+FGLF+ +F+RRHGLHL+G
Sbjct: 240 RYTALVAKNAKQAAADMSKVLQVEIEAEQEKVEQLDTRKGNEFGLFTKQFLRRHGLHLLG 299
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
T VTWFLLD+AYYSQNLFQKDIF+ IGWIP+AKTMNAIEEV+KIARAQTLIALCSTVPGY
Sbjct: 300 TAVTWFLLDIAYYSQNLFQKDIFSTIGWIPEAKTMNAIEEVFKIARAQTLIALCSTVPGY 359
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVALIDK+GRF IQLMGFFFMTVFMFALAIPYHHWT+ ++IGFVVLYSLTFFF+NFG
Sbjct: 360 WFTVALIDKMGRFTIQLMGFFFMTVFMFALAIPYHHWTMKGNQIGFVVLYSLTFFFANFG 419
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGAN 478
PN TTFVVPAEIFPARLRSTCHGISAA+GKAGA+VGAFG+LY + G++ L++LG N
Sbjct: 420 PNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGYLYTQNAIGLRNTLIVLGVVN 479
Query: 479 FLGMLFTFLVPESKGKSLEEMS 500
FLG+LFTFLVPESKGKSLEEMS
Sbjct: 480 FLGLLFTFLVPESKGKSLEEMS 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|407316573|gb|AFU07481.1| phosphate transporter [Camellia oleifera] | Back alignment and taxonomy information |
|---|
Score = 897 bits (2317), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/526 (82%), Positives = 471/526 (89%), Gaps = 16/526 (3%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MAK+QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYY+ +G
Sbjct: 1 MAKEQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHNDGDA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP NV++AVNGVA CGTLAGQLFFGWLGDKMGRKRVYGMTLM+MVI ++ASGLSFG
Sbjct: 61 KPGSLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMVMVIAAIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K K VM TLCFFRFWLGFGIGGDYPLSATIMSEYANK+TRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 KSAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKRTRGAFIAAVFAMQGFGILTGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
MVA I+SA+FKA FPAP Y NP STVPEADY+WRIILMFGAIPA LTYYWRMKMPETA
Sbjct: 181 MVACIISASFKAKFPAPAYQVNPLGSTVPEADYVWRIILMFGAIPAALTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ--EKGKNDFGLFSAKFVRRHGLHLIG 298
RYTAL+AKNAKQAAADMSKVLQVELEAEQEKVE+ E NDFGLFS +F+ RHGLHL+G
Sbjct: 241 RYTALIAKNAKQAAADMSKVLQVELEAEQEKVEKLSEDKGNDFGLFSKQFLHRHGLHLLG 300
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
TT TWFLLD+A+YSQNLFQKDIF+AIGWIP AKTMNAIEEV++I+RAQTLIALCSTVPGY
Sbjct: 301 TTTTWFLLDIAFYSQNLFQKDIFSAIGWIPDAKTMNAIEEVFRISRAQTLIALCSTVPGY 360
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVALIDKIGRF IQLMGFFFMTVFM+ALAIPY+HWT ++RIGFVV+YSLTFFF+NFG
Sbjct: 361 WFTVALIDKIGRFTIQLMGFFFMTVFMYALAIPYNHWTHKENRIGFVVMYSLTFFFANFG 420
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------------- 465
PN TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLY A
Sbjct: 421 PNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQNQDPTKTDKGYPPGI 480
Query: 466 GVKKALLILGGANFLGMLFTFLVPESKGKSLEEMSGEAEE-EKGTT 510
GV+ AL++LGG NFLGM+FTFLVPESKGKSLEEMS E EE E G+T
Sbjct: 481 GVRNALMVLGGVNFLGMVFTFLVPESKGKSLEEMSQENEEDEDGST 526
|
Source: Camellia oleifera Species: Camellia oleifera Genus: Camellia Family: Theaceae Order: Ericales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|358248970|ref|NP_001239971.1| inorganic phosphate transporter 1-4-like [Glycine max] gi|265144425|gb|ACY74617.1| phosphate transporter1-6 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 891 bits (2303), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/498 (84%), Positives = 465/498 (93%), Gaps = 3/498 (0%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA+DQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYY+ EG D
Sbjct: 1 MARDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYF-EGHD 59
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP NV++A+NGVA CGTLAGQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSFG
Sbjct: 60 KPGSLPSNVSAAINGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIASGLSFG 119
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K+PKAVM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 120 KDPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 179
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VAI+VS+AFKA +PAP + NP STVP+ADY+WRIILMFGA+PALLTYYWRMKMPETA
Sbjct: 180 TVAIVVSSAFKALYPAPAFQVNPVLSTVPQADYVWRIILMFGALPALLTYYWRMKMPETA 239
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ--EKGKNDFGLFSAKFVRRHGLHLIG 298
RYTALVAKNAKQAAADMSKVLQVE+EAEQEKVEQ + N+FGLF+ +F+RRHGLHL+G
Sbjct: 240 RYTALVAKNAKQAAADMSKVLQVEIEAEQEKVEQLDTRKGNEFGLFTKQFLRRHGLHLLG 299
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
T VTWFLLD+AYYSQNLFQKDIF+ IGWIP+AKTMNAIEEV+KIARAQTLIALCSTVPGY
Sbjct: 300 TAVTWFLLDIAYYSQNLFQKDIFSTIGWIPEAKTMNAIEEVFKIARAQTLIALCSTVPGY 359
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVALIDK+GRF IQLMGFFFMTVFMFALAIPYHHWT+ ++IGFVVLYSLTFFF+NFG
Sbjct: 360 WFTVALIDKMGRFTIQLMGFFFMTVFMFALAIPYHHWTMKGNQIGFVVLYSLTFFFANFG 419
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGAN 478
PN TTFVVPAEIFPARLRSTCHGISAA+GKAGA+VGAFG+LY + G++ L++LG N
Sbjct: 420 PNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGYLYTQNAIGLRNTLIVLGVVN 479
Query: 479 FLGMLFTFLVPESKGKSL 496
FLG+LFTFLVPESKGKSL
Sbjct: 480 FLGLLFTFLVPESKGKSL 497
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359806250|ref|NP_001240957.1| inorganic phosphate transporter 1-4-like [Glycine max] gi|265144542|gb|ACY74621.1| phosphate transporter1-10 [Glycine max] gi|389828615|gb|AFL02622.1| soybean phosphate transporter protein 14 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/498 (84%), Positives = 464/498 (93%), Gaps = 3/498 (0%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA+DQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYY+ EG D
Sbjct: 1 MARDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYF-EGHD 59
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP NV++A+NGVA CGTLAGQLFFGWLGDKMGRKRVYGMTLM+MVICS+ASGLSFG
Sbjct: 60 KPGSLPSNVSAAINGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMLMVICSIASGLSFG 119
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K+PKAVM TLCFFRFWLGFGIGGDYPLSATIMSEYAN+KTRGAFIAAVFAMQGFGIL+GG
Sbjct: 120 KDPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANRKTRGAFIAAVFAMQGFGILAGG 179
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VAI+VS+AFKA +PAP + NP STVP+ADY+WRIILMFGA+PALLTYYWRMKMPETA
Sbjct: 180 TVAIVVSSAFKALYPAPAFQVNPVLSTVPQADYVWRIILMFGALPALLTYYWRMKMPETA 239
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ--EKGKNDFGLFSAKFVRRHGLHLIG 298
RYTALVAKNAKQAAADMSKVLQVE+EAEQEKVEQ + N+FGLF+ +F+RRHGLHL+G
Sbjct: 240 RYTALVAKNAKQAAADMSKVLQVEIEAEQEKVEQLDTRRGNEFGLFTKQFLRRHGLHLVG 299
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
T TWFLLD+AYYSQNLFQKDIF+ IGWIP+AKTMNA+EEV+KIARAQTLIALCSTVPGY
Sbjct: 300 TATTWFLLDIAYYSQNLFQKDIFSTIGWIPEAKTMNAVEEVFKIARAQTLIALCSTVPGY 359
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVALIDK+GRF IQLMGFFFMTVFMFALAIPYHHWT+ ++IGFVVLYSLTFFF+NFG
Sbjct: 360 WFTVALIDKMGRFTIQLMGFFFMTVFMFALAIPYHHWTMKGNQIGFVVLYSLTFFFANFG 419
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGAN 478
PN TTFVVPAEIFPARLRSTCHGISAA+GKAGA+VGAFG+LY + G++ L++LG N
Sbjct: 420 PNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMVGAFGYLYAQNAIGLRNTLIVLGVIN 479
Query: 479 FLGMLFTFLVPESKGKSL 496
FLGMLFTFLVPESKGKSL
Sbjct: 480 FLGMLFTFLVPESKGKSL 497
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8248034|gb|AAF74025.1|AF156696_1 inorganic phosphate transporter [Nicotiana tabacum] | Back alignment and taxonomy information |
|---|
Score = 884 bits (2285), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/537 (80%), Positives = 471/537 (87%), Gaps = 22/537 (4%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MAKDQLQVLNALDVAKTQ YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYY+ +G+
Sbjct: 1 MAKDQLQVLNALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHHDGAP 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NV++AVNGVA CGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICS+ASGLSFG
Sbjct: 61 KPGTLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
PK+VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 HTPKSVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
MVAIIVSAAFK FPA Y +P STV +AD++WRIILMFGAIPA +TYYWRMKMPETA
Sbjct: 181 MVAIIVSAAFKGAFPAQTYQTDPLGSTVSQADFVWRIILMFGAIPAAMTYYWRMKMPETA 240
Query: 241 RYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ--EKGKNDFGLFSAKFVRRHGLHLIG 298
RYTALVAKN KQAA DMSKVLQV++E EQEKVE + +N+FGLFS +F+RRHGLHL+G
Sbjct: 241 RYTALVAKNLKQAANDMSKVLQVDIEEEQEKVENVSQNTRNEFGLFSKEFLRRHGLHLLG 300
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
T TWFLLD+A+YSQNLFQKDIF+AIGWIP A+TMNA+EEVYKIARAQTLIALCSTVPGY
Sbjct: 301 TASTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNALEEVYKIARAQTLIALCSTVPGY 360
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTV IDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL D+RIGFV++YSLTFFF+NFG
Sbjct: 361 WFTVFFIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLKDNRIGFVIMYSLTFFFANFG 420
Query: 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------------- 465
PN TTFVVPAEIFPARLRSTCHGISAA+GKAGA++GAFGFLY A +
Sbjct: 421 PNATTFVVPAEIFPARLRSTCHGISAAAGKAGAMIGAFGFLYAAQPTDRKKADAGYPAGI 480
Query: 466 GVKKALLILGGANFLGMLFTFLVPESKGKSLEEMS--GEAEEEKGTT-----ATVPV 515
GV+ +L++LG NFLGM+FTFLVPESKGKSLEEMS E EEE GT TVPV
Sbjct: 481 GVRNSLIVLGCVNFLGMVFTFLVPESKGKSLEEMSRENEGEEESGTEMKNSGRTVPV 537
|
Source: Nicotiana tabacum Species: Nicotiana tabacum Genus: Nicotiana Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 515 | ||||||
| TAIR|locus:2102450 | 535 | PHT1;7 "AT3G54700" [Arabidopsi | 0.959 | 0.923 | 0.724 | 2e-198 | |
| TAIR|locus:2064895 | 534 | PHT1;4 "phosphate transporter | 0.963 | 0.928 | 0.712 | 2.9e-197 | |
| TAIR|locus:2176471 | 521 | PHT1;3 "phosphate transporter | 0.963 | 0.952 | 0.703 | 5.9e-192 | |
| TAIR|locus:2176461 | 524 | PHT1;1 "AT5G43350" [Arabidopsi | 0.963 | 0.946 | 0.7 | 7.5e-192 | |
| TAIR|locus:2176481 | 524 | PHT1;2 "phosphate transporter | 0.963 | 0.946 | 0.698 | 9.5e-192 | |
| TAIR|locus:2046432 | 542 | PHT1;5 "phosphate transporter | 0.963 | 0.915 | 0.687 | 5.4e-189 | |
| TAIR|locus:2176451 | 516 | PHT1;6 "phosphate transporter | 0.959 | 0.957 | 0.652 | 1.3e-180 | |
| TAIR|locus:2037390 | 534 | PHT1;8 "phosphate transporter | 0.932 | 0.898 | 0.466 | 4.6e-112 | |
| TAIR|locus:2011681 | 532 | PHT1;9 "AT1G76430" [Arabidopsi | 0.869 | 0.842 | 0.477 | 6.1e-110 | |
| TAIR|locus:504955256 | 280 | AT4G08878 "AT4G08878" [Arabido | 0.442 | 0.814 | 0.701 | 4.4e-88 |
| TAIR|locus:2102450 PHT1;7 "AT3G54700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1921 (681.3 bits), Expect = 2.0e-198, P = 2.0e-198
Identities = 369/509 (72%), Positives = 409/509 (80%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA DQL VLNALDVAKTQWYHFTAI+IAGMGFFTDAYDLFCISLVTKLLGRIYY+ +GS+
Sbjct: 1 MAGDQLNVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGSE 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NV++AVNGVA CGTLAGQLFFGWLGDK+GRK+VYGMTLM+MV+CS+ASGLSFG
Sbjct: 61 KPGTLPPNVSAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
PK VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 SNPKTVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILTGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+ AIIVSAAF+A FPAP Y + ASTVP+ADY+WRIILM GA+PA +TYY R KMPETA
Sbjct: 181 IFAIIVSAAFEAKFPAPTYQIDALASTVPQADYVWRIILMVGALPAAMTYYSRSKMPETA 240
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXGKNDFGLFSAKFVRRHGLHLIGTT 300
RYT +MS N FGLFS +F++RHGLHL+GTT
Sbjct: 241 RYTALVAKDAKLAASNMSKVLQVEIEAEQQGTEDKS--NSFGLFSKEFMKRHGLHLLGTT 298
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWF 360
TWFLLD+A+YSQNLFQKDIF+AIGWIP A+TMNAI+EV+KIARAQTLIALCSTVPGYWF
Sbjct: 299 STWFLLDIAFYSQNLFQKDIFSAIGWIPPAQTMNAIQEVFKIARAQTLIALCSTVPGYWF 358
Query: 361 TVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420
TVA ID IGRFAIQ+MGFFFMTVFMFALAIPY HWT ++RIGFV +YSLTFFF+NFGPN
Sbjct: 359 TVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYDHWTHKENRIGFVAMYSLTFFFANFGPN 418
Query: 421 TTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTS-------------GV 467
TTFVVPAEIFPAR RSTCH FGFLYLA + GV
Sbjct: 419 ATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQSPDKTKTEHGYPPGIGV 478
Query: 468 KKALLILGGANFLGMLFTFLVPESKGKSL 496
K +L++LG N LGM+FT LVPESKGKSL
Sbjct: 479 KNSLIVLGVVNLLGMVFTLLVPESKGKSL 507
|
|
| TAIR|locus:2064895 PHT1;4 "phosphate transporter 1;4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1910 (677.4 bits), Expect = 2.9e-197, P = 2.9e-197
Identities = 364/511 (71%), Positives = 413/511 (80%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA++QLQVLNALDVAKTQWYHFTAI+IAGMGFFTDAYDLFCISLVTKLLGRIYY+ EG+
Sbjct: 1 MAREQLQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVEGAQ 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NVA+AVNGVA CGTLAGQLFFGWLGDK+GRK+VYGMTLM+MV+CS+ASGLSFG
Sbjct: 61 KPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGMTLMVMVLCSIASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
EPKAVM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF++AVFAMQGFGI++GG
Sbjct: 121 HEPKAVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFVSAVFAMQGFGIMAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+ AII+S+AF+A FP+P Y+ + ST+P+AD +WRIILM GAIPA +TYY R KMPETA
Sbjct: 181 IFAIIISSAFEAKFPSPAYADDALGSTIPQADLVWRIILMAGAIPAAMTYYSRSKMPETA 240
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXGKND--FGLFSAKFVRRHGLHLIG 298
RYT DMS + FGLFS +F+ RHGLHL+G
Sbjct: 241 RYTALVAKDAKQAASDMSKVLQVEIEPEQQKLEEISKEKSKAFGLFSKEFMSRHGLHLLG 300
Query: 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGY 358
TT TWFLLD+A+YSQNLFQKDIF+AIGWIP A++MNAI+EV+KIARAQTLIALCSTVPGY
Sbjct: 301 TTSTWFLLDIAFYSQNLFQKDIFSAIGWIPPAQSMNAIQEVFKIARAQTLIALCSTVPGY 360
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418
WFTVA ID IGRFAIQ+MGFFFMTVFMFALAIPY+HWT ++RIGFV++YSLTFFF+NFG
Sbjct: 361 WFTVAFIDVIGRFAIQMMGFFFMTVFMFALAIPYNHWTHKENRIGFVIMYSLTFFFANFG 420
Query: 419 PNTTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTS------------- 465
PN TTFVVPAEIFPAR RSTCH FGFLYLA
Sbjct: 421 PNATTFVVPAEIFPARFRSTCHGISAASGKLGAMVGAFGFLYLAQNPDKDKTDAGYPPGI 480
Query: 466 GVKKALLILGGANFLGMLFTFLVPESKGKSL 496
GV+ +L++LG NFLG+LFTFLVPESKGKSL
Sbjct: 481 GVRNSLIVLGVVNFLGILFTFLVPESKGKSL 511
|
|
| TAIR|locus:2176471 PHT1;3 "phosphate transporter 1;3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1860 (659.8 bits), Expect = 5.9e-192, P = 5.9e-192
Identities = 359/510 (70%), Positives = 399/510 (78%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA QL VL ALDVAKTQ YHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGR+YY+ S
Sbjct: 1 MADQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRLYYFNPTSA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP +VA+AVNGVALCGTLAGQLFFGWLGDK+GRK+VYG+TL+MM++CS+ASGLS G
Sbjct: 61 KPGSLPPHVAAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLIMMILCSVASGLSLG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
K VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GIL+GG
Sbjct: 121 NSAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VA+ VS+ F FP+P Y + ST P+ADYIWRII+MFGA+PA LTYYWRMKMPETA
Sbjct: 181 FVALAVSSIFDKKFPSPTYEQDRFLSTPPQADYIWRIIVMFGALPAALTYYWRMKMPETA 240
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXG-KNDFGLFSAKFVRRHGLHLIGT 299
RYT DMS K ++GLFS +F+RRHGLHL+GT
Sbjct: 241 RYTALVAKNIKQATADMSKVLQTDLELEERVEDDVKDPKKNYGLFSKEFLRRHGLHLLGT 300
Query: 300 TVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYW 359
T TWFLLD+A+YSQNLFQKDIF+AIGWIPKA TMNAI EV+KIARAQTLIALCSTVPGYW
Sbjct: 301 TSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNAIHEVFKIARAQTLIALCSTVPGYW 360
Query: 360 FTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419
FTVA ID IGRFAIQLMGFF MTVFMFA+A PY+HW LPD+RIGFVV+YSLTFFF+NFGP
Sbjct: 361 FTVAFIDIIGRFAIQLMGFFMMTVFMFAIAFPYNHWILPDNRIGFVVMYSLTFFFANFGP 420
Query: 420 NTTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTS-------------G 466
N TTF+VPAEIFPARLRSTCH FGFLY A G
Sbjct: 421 NATTFIVPAEIFPARLRSTCHGISAATGKAGAIVGAFGFLYAAQPQDKTKTDAGYPPGIG 480
Query: 467 VKKALLILGGANFLGMLFTFLVPESKGKSL 496
VK +L++LG NF+GMLFTFLVPE KGKSL
Sbjct: 481 VKNSLIMLGVINFVGMLFTFLVPEPKGKSL 510
|
|
| TAIR|locus:2176461 PHT1;1 "AT5G43350" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1859 (659.5 bits), Expect = 7.5e-192, P = 7.5e-192
Identities = 357/510 (70%), Positives = 400/510 (78%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA+ QL VL ALDVAKTQ YHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGRIYY+ S
Sbjct: 1 MAEQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP +VA+AVNGVALCGTL+GQLFFGWLGDK+GRK+VYG+TL+MM++CS+ASGLSFG
Sbjct: 61 KPGSLPPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLVMMILCSVASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
E K VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GIL+GG
Sbjct: 121 HEAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VA+ VS+ F FPAP Y+ N A ST P+ DYIWRII+MFGA+PA LTYYWRMKMPETA
Sbjct: 181 FVALAVSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETA 240
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXG-KNDFGLFSAKFVRRHGLHLIGT 299
RYT DMS K ++GLFS +F+RRHGLHL+GT
Sbjct: 241 RYTALVAKNIKQATADMSKVLQTDIELEERVEDDVKDPKQNYGLFSKEFLRRHGLHLLGT 300
Query: 300 TVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYW 359
T TWFLLD+A+YSQNLFQKDIF+AIGWIPKA TMNA EV++IARAQTLIALCSTVPGYW
Sbjct: 301 TSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYW 360
Query: 360 FTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419
FTVA ID IGRF IQL GFF MTVFMFA+A PY+HW P++RIGFVV+YSLTFFF+NFGP
Sbjct: 361 FTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFANFGP 420
Query: 420 NTTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTS-------------G 466
N TTF+VPAEIFPARLRSTCH FGFLY A + G
Sbjct: 421 NATTFIVPAEIFPARLRSTCHGISAAAGKAGAIVGAFGFLYAAQSQDKAKVDAGYPPGIG 480
Query: 467 VKKALLILGGANFLGMLFTFLVPESKGKSL 496
VK +L++LG NF+GMLFTFLVPE KGKSL
Sbjct: 481 VKNSLIMLGVLNFIGMLFTFLVPEPKGKSL 510
|
|
| TAIR|locus:2176481 PHT1;2 "phosphate transporter 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1858 (659.1 bits), Expect = 9.5e-192, P = 9.5e-192
Identities = 356/510 (69%), Positives = 399/510 (78%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MA+ QL VL ALDVAKTQ YHFTAIVIAGMGFFTDAYDLFC+SLVTKLLGRIYY+ S
Sbjct: 1 MAEQQLGVLKALDVAKTQLYHFTAIVIAGMGFFTDAYDLFCVSLVTKLLGRIYYFNPESA 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PG+LP +VA+AVNGVALCGTL+GQLFFGWLGDK+GRK+VYG+TL+MM++CS+ASGLSFG
Sbjct: 61 KPGSLPPHVAAAVNGVALCGTLSGQLFFGWLGDKLGRKKVYGLTLIMMILCSVASGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
E K VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG GIL+GG
Sbjct: 121 NEAKGVMTTLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGVGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
VA+ VS+ F FPAP Y+ N A ST P+ DYIWRII+MFGA+PA LTYYWRMKMPETA
Sbjct: 181 FVALAVSSIFDKKFPAPTYAVNRALSTPPQVDYIWRIIVMFGALPAALTYYWRMKMPETA 240
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXG-KNDFGLFSAKFVRRHGLHLIGT 299
RYT DMS + ++GLFS +F+RRHGLHL+GT
Sbjct: 241 RYTALVAKNIKQATADMSKVLQTDIELEERVEDDVKDPRQNYGLFSKEFLRRHGLHLLGT 300
Query: 300 TVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYW 359
T TWFLLD+A+YSQNLFQKDIF+AIGWIPKA TMNA EV++IARAQTLIALCSTVPGYW
Sbjct: 301 TSTWFLLDIAFYSQNLFQKDIFSAIGWIPKAATMNATHEVFRIARAQTLIALCSTVPGYW 360
Query: 360 FTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419
FTVA ID IGRF IQL GFF MTVFMFA+A PY+HW P++RIGFVV+YSLTFFF+NFGP
Sbjct: 361 FTVAFIDTIGRFKIQLNGFFMMTVFMFAIAFPYNHWIKPENRIGFVVMYSLTFFFANFGP 420
Query: 420 NTTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTS-------------G 466
N TTF+VPAEIFPARLRSTCH FGFLY A G
Sbjct: 421 NATTFIVPAEIFPARLRSTCHGISAAAGKAGAIIGAFGFLYAAQNQDKAKVDAGYPPGIG 480
Query: 467 VKKALLILGGANFLGMLFTFLVPESKGKSL 496
VK +L++LG NF+GMLFTFLVPE KGKSL
Sbjct: 481 VKNSLIVLGVLNFIGMLFTFLVPEPKGKSL 510
|
|
| TAIR|locus:2046432 PHT1;5 "phosphate transporter 1;5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1832 (650.0 bits), Expect = 5.4e-189, P = 5.4e-189
Identities = 352/512 (68%), Positives = 394/512 (76%)
Query: 1 MAKDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD 60
MAK +VLNALD AKTQ YHFTAIVIAGMGFFTDAYDLF ISLVTKLLGRIYY+ + S
Sbjct: 1 MAKKGKEVLNALDAAKTQMYHFTAIVIAGMGFFTDAYDLFSISLVTKLLGRIYYHVDSSK 60
Query: 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120
PGTLP NVA+AVNGVA CGTLAGQLFFGWLGDK+GRK+VYG+TLM+MV+CSL SGLSFG
Sbjct: 61 KPGTLPPNVAAAVNGVAFCGTLAGQLFFGWLGDKLGRKKVYGITLMLMVLCSLGSGLSFG 120
Query: 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180
VM TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL+GG
Sbjct: 121 HSANGVMATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILAGG 180
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
+V++IVS+ F F AP Y +P STVP+ADY+WRI+LMFGAIPALLTYYWRMKMPETA
Sbjct: 181 IVSLIVSSTFDHAFKAPTYEVDPVGSTVPQADYVWRIVLMFGAIPALLTYYWRMKMPETA 240
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXGKND---FGLFSAKFVRRHGLHLI 297
RYT DMS N FGLF+ +F RRHGLHL+
Sbjct: 241 RYTALVARNTKQAASDMSKVLQVDLIAEEEAQSNSNSSNPNFTFGLFTREFARRHGLHLL 300
Query: 298 GTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPG 357
GTT TWFLLD+AYYS NLFQKDI+TAIGWIP A+TMNAI EV+ +++AQTLIALC TVPG
Sbjct: 301 GTTTTWFLLDIAYYSSNLFQKDIYTAIGWIPAAETMNAIHEVFTVSKAQTLIALCGTVPG 360
Query: 358 YWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417
YWFTVA ID +GRF IQLMGF FMT+FMFALAIPY HW ++RIGF+++YSLT FF+NF
Sbjct: 361 YWFTVAFIDILGRFFIQLMGFIFMTIFMFALAIPYDHWRHRENRIGFLIMYSLTMFFANF 420
Query: 418 GPNTTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTS------------ 465
GPN TTFVVPAEIFPARLRSTCH FGFLY A +S
Sbjct: 421 GPNATTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYAAQSSDSEKTDAGYPPG 480
Query: 466 -GVKKALLILGGANFLGMLFTFLVPESKGKSL 496
GV+ +LL+L NFLG++FT LVPESKGKSL
Sbjct: 481 IGVRNSLLMLACVNFLGIVFTLLVPESKGKSL 512
|
|
| TAIR|locus:2176451 PHT1;6 "phosphate transporter 1;6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1753 (622.1 bits), Expect = 1.3e-180, P = 1.3e-180
Identities = 323/495 (65%), Positives = 382/495 (77%)
Query: 3 KDQLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSP 62
++Q +L ALDVAKTQWYH TA+V++GMGFFTD+YDLF ISL+TKLLGRIYY GS SP
Sbjct: 4 EEQGSILKALDVAKTQWYHVTAVVVSGMGFFTDSYDLFVISLITKLLGRIYYQVPGSSSP 63
Query: 63 GTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKE 122
G+LPD +++AV+GVA GT GQ+FFG LGDK+GRKRVYG+TL++M ICS+ SGLS G++
Sbjct: 64 GSLPDGISAAVSGVAFAGTFIGQIFFGCLGDKLGRKRVYGLTLLIMTICSICSGLSLGRD 123
Query: 123 PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182
PK VM+TLCFFRFWLGFGIGGDYPLSATIMSEY+NK+TRGAFIAAVF MQG GIL+ G V
Sbjct: 124 PKTVMVTLCFFRFWLGFGIGGDYPLSATIMSEYSNKRTRGAFIAAVFGMQGIGILAAGAV 183
Query: 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242
+++VSA F++ FP+ Y + AASTVP+ADY+WRIILM GA+PALLTYYWRMKMPETARY
Sbjct: 184 SLLVSAVFESKFPSRAYILDGAASTVPQADYVWRIILMVGALPALLTYYWRMKMPETARY 243
Query: 243 TXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXGKND-FGLFSAKFVRRHGLHLIGTTV 301
T DM+ +D FGLFS KF+RRHGLHL+GT
Sbjct: 244 TALVSKNAEQAALDMTKVLNVDIEASAAKNDQARVSSDEFGLFSMKFLRRHGLHLLGTAS 303
Query: 302 TWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFT 361
TWFLLD+A+YSQNLFQKDIFT IGW+P AKTMNAI+E+Y IA+AQT+IA CSTVPGY+FT
Sbjct: 304 TWFLLDIAFYSQNLFQKDIFTTIGWLPSAKTMNAIQELYMIAKAQTIIACCSTVPGYFFT 363
Query: 362 VALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNT 421
V ID +GR IQ+MGF MT+FM +LAIPYHHWTLP +RIGFVVLYS TFFFSNFGPN
Sbjct: 364 VGFIDYMGRKKIQIMGFAMMTIFMLSLAIPYHHWTLPANRIGFVVLYSFTFFFSNFGPNA 423
Query: 422 TTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLADTSGVKKALLILGGANFLG 481
TTF+VPAEIFPAR+RSTCH FGF L G+ L I+ G N LG
Sbjct: 424 TTFIVPAEIFPARIRSTCHGISAASGKAGAMVGSFGFSALVKALGMSNTLYIMAGINLLG 483
Query: 482 MLFTFLVPESKGKSL 496
+L TF +PE+ GKSL
Sbjct: 484 LLLTFTIPETNGKSL 498
|
|
| TAIR|locus:2037390 PHT1;8 "phosphate transporter 1;8" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1106 (394.4 bits), Expect = 4.6e-112, P = 4.6e-112
Identities = 238/510 (46%), Positives = 301/510 (59%)
Query: 6 LQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTL 65
++VL++LDVA+TQWYHF AI++AGMG FTDAYDLFCI+ V K++ +YY DS T
Sbjct: 3 IKVLSSLDVARTQWYHFKAIIVAGMGLFTDAYDLFCIAPVMKMISHVYY---NGDSINTA 59
Query: 66 PDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKA 125
V S +AL GT GQL FG+LGD++GR+RVYG+ L++M++ S G S ++
Sbjct: 60 ---VLSTSYAIALLGTATGQLVFGYLGDRVGRRRVYGLCLIIMILSSFGCGFSVCTTRRS 116
Query: 126 -VMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
VM++L FFRF+LG GIGGDYPLSATIMSE+ANK+TRGAFIAAVF+MQG GIL V +
Sbjct: 117 CVMVSLGFFRFFLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILVSSAVTM 176
Query: 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTX 244
V AFK + + AA T EAD WR+ILM GA+PA LT+YWRM MPETARYT
Sbjct: 177 AVCVAFKRSGGG--LEVDAAAPT--EADLAWRLILMIGALPAALTFYWRMLMPETARYTA 232
Query: 245 XXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXXGKN--DFGLFSAKFVRRHGLHLIGTTVT 302
DM + LFS F R HG L +
Sbjct: 233 LVENNIVQAAKDMQRVMSRSHISDEATTDPPPPPPPPSYKLFSRCFFRLHGRDLFAASFN 292
Query: 303 WFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTV 362
WFL+D+ +Y+ NL IF+ P N + +++A +IA CST+PGYWFTV
Sbjct: 293 WFLVDIVFYTSNLLLSHIFSHYSKKPSTAE-NVYDAAFEVAELGAIIAACSTIPGYWFTV 351
Query: 363 ALIDKIGRFAIQLMGFFFMTVFMFALAIPYH-HWTLPDHRI-GFVVLYSLTFFFSNFGPN 420
IDKIGR IQ+MGFFFM V IPY +W+ +H GF+VLY L FFF NFGPN
Sbjct: 352 YFIDKIGRVKIQIMGFFFMAVIYLVAGIPYSWYWSKHEHNNKGFMVLYGLVFFFCNFGPN 411
Query: 421 TTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLYLA-------------DTSGV 467
TTTF++PAE FPAR RSTCH GFL+ + + +
Sbjct: 412 TTTFIIPAEHFPARFRSTCHGISGAAGKLGAIVGTVGFLWATKKMESDDKNQIYPEVNRM 471
Query: 468 KKALLILGGANFLGMLFT-FLVPESKGKSL 496
+ A LILGG G+L T F E+ G+SL
Sbjct: 472 RIAFLILGGVCIAGILVTYFFTKETMGRSL 501
|
|
| TAIR|locus:2011681 PHT1;9 "AT1G76430" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1086 (387.4 bits), Expect = 6.1e-110, P = 6.1e-110
Identities = 223/467 (47%), Positives = 285/467 (61%)
Query: 5 QLQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGT 64
+L +L+ALD A+ QWYHF AI++AGMG FTDAYDLFCI+ + K++ +IYY+K DS GT
Sbjct: 3 ELSLLSALDAARIQWYHFKAIIVAGMGLFTDAYDLFCIAPIMKMISQIYYHK---DSIGT 59
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
+ S +AL GT GQL FG+LGD++GR++VYG++L++MV S G S +
Sbjct: 60 A---LLSTSYAIALLGTALGQLIFGYLGDRVGRRKVYGLSLLIMVFSSFGCGFSVCTTRR 116
Query: 125 A-VMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183
+ VM++L FFRF LG GIGGDYPLSATIMSE+ANK+TRGAFIAAVF+MQG GIL V
Sbjct: 117 SCVMVSLGFFRFVLGLGIGGDYPLSATIMSEFANKRTRGAFIAAVFSMQGLGILMSSAVT 176
Query: 184 IIVSAAFKANFPAPIYSANPAA-STV--PEADYIWRIILMFGAIPALLTYYWRMKMPETA 240
++V AFK N A T+ PE+D WR+ILM GA+PA LT+YWRM MPETA
Sbjct: 177 MVVCLAFKNAGEGSSEKTNVAGLETLAPPESDIAWRLILMIGALPAALTFYWRMLMPETA 236
Query: 241 RYTXXXXXXXXXXXXDMSXXXXXXXXXXXXXXXXXX-----GKNDFGLFSAKFVRRHGLH 295
RYT DM + + LFS +F+ HG
Sbjct: 237 RYTALVENNVVQAAKDMQRVMSVSMISQITEDSSSELEQPPSSSSYKLFSRRFLSLHGRD 296
Query: 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTV 355
L + WFL+DV +Y+ NL IF P T N + +++A+ ++A CST+
Sbjct: 297 LFAASANWFLVDVVFYTSNLLLSQIFNFSNK-PLNST-NVYDSAFEVAKLAAIVAACSTI 354
Query: 356 PGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYH-HWTLPDH-RIGFVVLYSLTFF 413
PGYWFTV IDKIGR IQ+MGFF M V IPY +W+ + GF+VLY L FF
Sbjct: 355 PGYWFTVYFIDKIGRVKIQMMGFFLMAVVYLVAGIPYSWYWSKHEKTNKGFMVLYGLIFF 414
Query: 414 FSNFGPNTTTFVVPAEIFPARLRSTCHXXXXXXXXXXXXXXXFGFLY 460
FSNFGPNTTTF++PAE+FPAR RSTCH GFL+
Sbjct: 415 FSNFGPNTTTFIIPAELFPARFRSTCHGISGAAGKFGAIVGTVGFLW 461
|
|
| TAIR|locus:504955256 AT4G08878 "AT4G08878" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 4.4e-88, Sum P(2) = 4.4e-88
Identities = 160/228 (70%), Positives = 187/228 (82%)
Query: 31 GFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGW 90
GFFTD+YDLF ISL+TKLLGRIYY GS SPG+LPD ++ AV+GVA GT GQ+FFG
Sbjct: 13 GFFTDSYDLFVISLITKLLGRIYYQVPGSSSPGSLPDGISVAVSGVAFAGTFLGQIFFGC 72
Query: 91 LGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSAT 150
LGDK+GRKRVYG+TL++M ICS+AS LSFGK+PK VM+TLCFFRFWLGFGIGGDYPLSAT
Sbjct: 73 LGDKLGRKRVYGLTLLIMTICSIASSLSFGKDPKTVMVTLCFFRFWLGFGIGGDYPLSAT 132
Query: 151 IMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPE 210
IM EYANK+TRGAFIA+VFAMQG GIL+ G V+++VS F+ FP+ Y + AASTVP+
Sbjct: 133 IMFEYANKRTRGAFIASVFAMQGVGILAAGGVSLLVSYLFEIEFPSRAYILDGAASTVPQ 192
Query: 211 ADYIWRIILMFGAIPALLTYYWRMKMPETARYTXXXXXXXXXXXXDMS 258
ADY+WRIILM GA+PALLTYYWRMKMPETARYT DM+
Sbjct: 193 ADYVWRIILMVGALPALLTYYWRMKMPETARYTALVAKNAEQAALDMN 240
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O48639 | PHT13_ARATH | No assigned EC number | 0.7681 | 0.9825 | 0.9712 | no | no |
| Q96243 | PHT12_ARATH | No assigned EC number | 0.7610 | 0.9766 | 0.9599 | no | no |
| Q7X7V2 | PHT15_ORYSJ | No assigned EC number | 0.7253 | 0.9805 | 0.9215 | no | no |
| Q8VYM2 | PHT11_ARATH | No assigned EC number | 0.7649 | 0.9766 | 0.9599 | no | no |
| Q8H074 | PT112_ORYSJ | No assigned EC number | 0.7408 | 0.9844 | 0.9371 | yes | no |
| Q494P0 | PHT17_ARATH | No assigned EC number | 0.7865 | 0.9805 | 0.9439 | yes | no |
| Q9ZWT3 | PHT16_ARATH | No assigned EC number | 0.7134 | 0.9805 | 0.9786 | no | no |
| Q96303 | PHT14_ARATH | No assigned EC number | 0.7852 | 0.9708 | 0.9363 | no | no |
| Q8GSD9 | PHT12_ORYSJ | No assigned EC number | 0.7373 | 0.9747 | 0.9507 | no | no |
| Q01MW8 | PHT14_ORYSI | No assigned EC number | 0.75 | 0.9766 | 0.9349 | N/A | no |
| P25297 | PHO84_YEAST | No assigned EC number | 0.3542 | 0.9398 | 0.8245 | yes | no |
| Q8H6G8 | PHT18_ORYSJ | No assigned EC number | 0.7606 | 0.9805 | 0.9334 | no | no |
| Q8H6G9 | PHT17_ORYSJ | No assigned EC number | 0.7241 | 0.9786 | 0.9581 | no | no |
| Q7XDZ7 | PHT13_ORYSJ | No assigned EC number | 0.7180 | 0.9883 | 0.9676 | no | no |
| Q8GYF4 | PHT15_ARATH | No assigned EC number | 0.7429 | 0.9961 | 0.9464 | no | no |
| O42885 | YBN1_SCHPO | No assigned EC number | 0.3513 | 0.9009 | 0.8111 | yes | no |
| Q8H6H2 | PHT14_ORYSJ | No assigned EC number | 0.7461 | 0.9766 | 0.9349 | no | no |
| Q8H6H0 | PHT16_ORYSJ | No assigned EC number | 0.7384 | 0.9747 | 0.9400 | no | no |
| Q8H6H4 | PHT11_ORYSJ | No assigned EC number | 0.7091 | 0.9980 | 0.9753 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 0.0 | |
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-41 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 2e-25 | |
| TIGR00895 | 398 | TIGR00895, 2A0115, benzoate transport | 2e-24 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-20 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 4e-17 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 9e-14 | |
| TIGR00891 | 405 | TIGR00891, 2A0112, putative sialic acid transporte | 3e-13 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 6e-13 | |
| PRK10642 | 490 | PRK10642, PRK10642, proline/glycine betaine transp | 4e-10 | |
| PRK03893 | 496 | PRK03893, PRK03893, putative sialic acid transport | 3e-09 | |
| PRK09952 | 438 | PRK09952, PRK09952, shikimate transporter; Provisi | 4e-09 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 3e-08 | |
| PRK12307 | 426 | PRK12307, PRK12307, putative sialic acid transport | 7e-08 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 1e-07 | |
| TIGR01299 | 742 | TIGR01299, synapt_SV2, synaptic vesicle protein SV | 2e-06 | |
| PRK10406 | 432 | PRK10406, PRK10406, alpha-ketoglutarate transporte | 3e-06 | |
| PRK11551 | 406 | PRK11551, PRK11551, putative 3-hydroxyphenylpropio | 4e-06 | |
| pfam13347 | 425 | pfam13347, MFS_2, MFS/sugar transport protein | 2e-04 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-04 | |
| TIGR00792 | 437 | TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuron | 0.003 | |
| COG2211 | 467 | COG2211, MelB, Na+/melibiose symporter and related | 0.003 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 750 bits (1938), Expect = 0.0
Identities = 299/511 (58%), Positives = 362/511 (70%), Gaps = 28/511 (5%)
Query: 11 ALDVAKTQ---WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPD 67
AL+ A T W HF AIVIAG+GFFTD+YDLFCISLVTK+LG +YY+ G LP
Sbjct: 1 ALEEADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYH-----GKGPLPS 55
Query: 68 NVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVM 127
+V++AVNG A GTLAGQLFFGWL DK+GRKRVYGM L++M+I ++ASGLS G PK+VM
Sbjct: 56 SVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVM 115
Query: 128 ITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187
TLCF+RFWLG GIGGDYPLSA I SE+A KK RGA +AAVFAMQGFGIL+G +VA+IV
Sbjct: 116 ATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175
Query: 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVA 247
A FK + A A+ S VP DY+WRI++ FGA+PALL Y+R+ +PET RYTA VA
Sbjct: 176 AGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVA 235
Query: 248 KNAKQAAADMSKVLQVELEAEQEKVEQEK------GKNDFGLFSAKFVRRHGLHLIGTTV 301
K+ +QAA+DMS VLQV++EAE ++VE+ + F+ F RHG HL+GT
Sbjct: 236 KDVEQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAG 295
Query: 302 TWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFT 361
+WFLLD+A+Y NL QK I +AIG+ P A T NA EE+YK A +IAL TVPGYW T
Sbjct: 296 SWFLLDIAFYGVNLNQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVT 355
Query: 362 VALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNT 421
V L+D IGR IQLMGFF +TV F L Y+H + H GF+ +Y L FF+NFGPN
Sbjct: 356 VFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLS--TH--GFLAIYVLAQFFANFGPNA 411
Query: 422 TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKK----------AL 471
TTF+VP E+FP R RST HGISAASGKAGAI+G FGFLYLA K L
Sbjct: 412 TTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVL 471
Query: 472 LILGGANFLGMLFTFLVPESKGKSLEEMSGE 502
I FLG+LFT L+PE+KGKSLEE+SGE
Sbjct: 472 EIFALFMFLGILFTLLIPETKGKSLEELSGE 502
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 3e-41
Identities = 115/489 (23%), Positives = 186/489 (38%), Gaps = 59/489 (12%)
Query: 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYYK-EGSDSPGTLPDNVASAVNGVALCGTLAG 84
++A +G F YD I L+ + S ++ + + G L G
Sbjct: 3 LVAALGGFLFGYDTGVIGAFLTLIKFFKRFGALTSIGACAASTVLSGLIVSIFSVGCLIG 62
Query: 85 QLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGD 144
LF G LGD+ GRK+ + ++ VI +L G + GK L R +G G+GG
Sbjct: 63 SLFAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSF----YMLIVGRVIVGLGVGGI 118
Query: 145 YPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPA 204
L +SE A KK RGA + + GI G +VA I+ +N
Sbjct: 119 SVLVPMYISEIAPKKLRGALGS----LYQLGITFGILVAAIIGLGLN-------KYSNSD 167
Query: 205 ASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAK--NAKQAAADMSKVLQ 262
WRI L +PA+L + +PE+ R+ L K A+ A + V
Sbjct: 168 G---------WRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAKLRGVSD 218
Query: 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLH---LIGTTVTWFLL-----DVAYYSQN 314
V+ E ++EK E+ + R + L+G + F + YYS
Sbjct: 219 VDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPT 278
Query: 315 LFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374
+F+ + + + I V T IA+ L+D+ GR +
Sbjct: 279 IFETL------GLSDSLLVTIIVGVVNFV--FTFIAI-----------FLVDRFGRRPLL 319
Query: 375 LMGFFFMTVFMFALAIPYHHWTLPDHR---IGFVVLYSLTFFFSNFGPNTTTFVVPAEIF 431
L+G M + L + + + I +V L F G +V+ +E+F
Sbjct: 320 LLGAAGMAICFLVLGVAL--LGVAKSKGAGIVAIVFILLFIAFFALGWGPVPWVIVSELF 377
Query: 432 PARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPES 491
P +R I+ A+ + F F + G L+ G + F VPE+
Sbjct: 378 PLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGYVFLVFAGLLVLFILFVFFFVPET 437
Query: 492 KGKSLEEMS 500
KG++LEE+
Sbjct: 438 KGRTLEEID 446
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 2e-25
Identities = 121/510 (23%), Positives = 189/510 (37%), Gaps = 75/510 (14%)
Query: 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNG 75
T W +IA +G YD I L + + S + + ++ V
Sbjct: 21 STYWKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKF--TSANSDSYSSSLWGLVVS 78
Query: 76 VALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKA-VMITLCFFR 134
+ L G G LF GWL D+ GRK+ +L+++ + + + G A + L R
Sbjct: 79 IFLVGGFIGALFAGWLSDRFGRKK----SLLIIALLFVIGAILMGLAAFALSVEMLIVGR 134
Query: 135 FWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANF 194
LG G+G L +SE A K RGA + + I G +VA
Sbjct: 135 VLLGIGVGIASALVPMYLSEIAPKALRGALTS----LYQLAITFGILVAYGFG------- 183
Query: 195 PAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAA 254
+T+ WRI L IPA L + +PE+ R+ LV K + A
Sbjct: 184 ----SGKVSLNNTLG-----WRIPLGLQLIPAGLLFLGLFFLPESPRW--LVGKGRVEEA 232
Query: 255 A----------DMSKVLQVELEAEQEKVEQEK------GKNDFGLFSAKFVRRHGLHLIG 298
K L ELE K EK + F R +G
Sbjct: 233 RKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRL----FLG 288
Query: 299 TTVTWFLL-----DVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCS 353
+ WF + YYS +F+ + A ++ I +
Sbjct: 289 VVLQWFQQFTGINAIMYYSPTIFENAGVST----DHAFLVSII---------VGAVNFAF 335
Query: 354 TVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIP---YHHWTLPDHRIGFVVLYSL 410
T + L+D+ GR + L+G M + +F L I + + +V L
Sbjct: 336 TFVAIF----LVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILL 391
Query: 411 TFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKA 470
F G +V+ +EIFP LR I+ A+ + F F + ++ GV
Sbjct: 392 FIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGV 451
Query: 471 LLILGGANFLGMLFT-FLVPESKGKSLEEM 499
+ GG N LG++F F +PE+KG++LEE+
Sbjct: 452 FIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 102/459 (22%), Positives = 168/459 (36%), Gaps = 80/459 (17%)
Query: 8 VLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPD 67
V N + Y + AI+++ + D YDL + + E P L
Sbjct: 2 VQNNIRKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAIS-----AEWGLDPVQL-G 55
Query: 68 NVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVM 127
+ SA L G G LFFG L D++GR+RV ++++ + +L L+ +
Sbjct: 56 FLFSA----GLIGMAFGALFFGPLADRIGRRRVLLWSILLFSVFTLLCALATN------V 105
Query: 128 ITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187
L RF G G+GG P ++SEYA K+ RG + +F G GG +A +
Sbjct: 106 TQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLI 165
Query: 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAI-PALLTYYWRMKMPETARYTALV 246
F WR + G I P LL +PE+ + LV
Sbjct: 166 PVFG-----------------------WRSLFYVGGIAPLLLLLLLMRFLPESIDF--LV 200
Query: 247 AKNAKQAAADMSKVL-----QVELEAEQEKVEQEKGKNDF-GLFSAKFVRRHGLHLIGTT 300
+K + ++ + + + ++K Q ++ F LF K R +
Sbjct: 201 SKRPETVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARI----TVLLW 256
Query: 301 VTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIAL--CSTVPGY 358
+ +F+L V Y W+PK +E + ++ A T AL V G
Sbjct: 257 LLYFMLLVGVYF----------LTNWLPKL----MVELGFSLSLAATGGALFNFGGVIGS 302
Query: 359 WFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF- 417
L D++G + VF + +L L F
Sbjct: 303 IIFGWLADRLGPRVT-ALLLLLGAVFAVLVGSTLFS---------PTLLLLLGAIAGFFV 352
Query: 418 -GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455
G + + + A +P +R+T G + G+ GAI+G
Sbjct: 353 NGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGP 391
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 3e-20
Identities = 89/436 (20%), Positives = 161/436 (36%), Gaps = 87/436 (19%)
Query: 80 GTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGF 139
G L G FG+L D+ GRK+V ++ ++ + + + S FR +G
Sbjct: 139 GVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFS------PNYTVFLVFRLLVGM 192
Query: 140 GIGGDYPLSATIMSEYANKKTRGAF--IAAVFAMQGFGILSGGMVAIIVSAAFKANFPAP 197
GIGG + + + +E+ KK R + VF G +L
Sbjct: 193 GIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPL------------------ 234
Query: 198 IYSANPAASTVPEADYIWRIILMFGAIPALLT--YYWRMKMPETARYTALVAKNAK---- 251
A +P+ WR + + ++P L W + PE+ R+ + +
Sbjct: 235 ------VAYFIPD----WRWLQLAVSLPTFLFFLLSWFV--PESPRWLISQGRIEEALKI 282
Query: 252 -QAAADMSKVLQ----VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLL 306
Q A ++ + L E++ +K + LF +R+ L L+ + WF
Sbjct: 283 LQRIAKINGKKLPAEVLSLSLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLM---MLWFTT 339
Query: 307 DVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALID 366
+YY L ++ I + L +P T+ LID
Sbjct: 340 AFSYYGLVLDLGNLGGNIYLD------------------LFISGL-VELPAKLITLLLID 380
Query: 367 KIGRFAIQLMGFFFMTVFMFALAI--PYHHWTLPDHRIGFVVL--YSLTFFFSNFGPNTT 422
++GR V + L ++ R VL + +T F
Sbjct: 381 RLGRRYTMAASLLLAGVALLLLLFVPVDLYFL----RTALAVLGKFGITSAFQ------M 430
Query: 423 TFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGM 482
++ AE++P +R+ G+ + + G+I+ F +YL + + L++ GG L
Sbjct: 431 VYLYTAELYPTVVRNLGVGVCSTMARVGSIISPF-LVYLGEKW-LFLPLVLFGGLALLAG 488
Query: 483 LFTFLVPESKGKSLEE 498
+ T +PE+KG L E
Sbjct: 489 ILTLFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-17
Identities = 95/434 (21%), Positives = 155/434 (35%), Gaps = 76/434 (17%)
Query: 31 GFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGW 90
G + +D + L+ ++ G L A G + FG
Sbjct: 1 GNAVEWFDFYLYGFAAVLVFHTFFPPSGDPLVALL---ATFATFAAGFLARPLGAIVFGH 57
Query: 91 LGDKMGRKRVYGMTLMMMVICSLASGL--SFGKEPKAVMITLCFFRFWLGFGIGGDYPLS 148
GD++GRK+ +TL+MM I +L GL S+ I L R GF +GG++ +
Sbjct: 58 FGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGA 117
Query: 149 ATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTV 208
A ++EYA RG + + G+L + +++S
Sbjct: 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLG----------------- 160
Query: 209 PEA--DYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELE 266
+A ++ WRI + A+ L+ Y R + ET + K+ K+ +++ L
Sbjct: 161 DDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEKH-KKKRGPIAETLT---- 215
Query: 267 AEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGW 326
K+ + I TT T++L+ Y
Sbjct: 216 -----------KHRKPFLLGLGLV------IATTTTFYLITT--YLPTYLT--------- 247
Query: 327 IPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMF 386
+T+ + +LI T+P + AL D+IGR + ++ TV
Sbjct: 248 ----QTLGLSANSALLVLMLSLILFFITIP---LSGALSDRIGRRPVLII----FTVLAA 296
Query: 387 ALAIPYHHWTL---PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGIS 443
LA+P L F+VL GP + E+FP +R T G S
Sbjct: 297 LLAVPLLMALLDSGSFTLFFFLVLGMALIGGMYTGPMGSFL---PELFPTEVRYT--GAS 351
Query: 444 AASGKAGAIVGAFG 457
A AGAI G F
Sbjct: 352 LAYNLAGAIFGGFA 365
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 9e-14
Identities = 127/523 (24%), Positives = 201/523 (38%), Gaps = 92/523 (17%)
Query: 15 AKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVN 74
Y F+ ++A +G YD IS + L ++ +P L ++ A+++
Sbjct: 4 QYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFV------APQNLSESAANSLL 57
Query: 75 GV----ALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASG------LSFGKEPK 124
G AL G + G G+ ++ GR+ + ++ I +L S S G +
Sbjct: 58 GFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNT 117
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
+ +R G G+G LS ++E A RG ++ F I+ G +V
Sbjct: 118 GYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVS----FNQFAIIFGQLVVY 173
Query: 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTA 244
V N+ I + A+ WR + AIPALL +PET RY
Sbjct: 174 FV------NYF--IARSGDASWLN---TDGWRYMFASEAIPALLFLMLLYFVPETPRYLM 222
Query: 245 LVAKNAKQAAADMSKVLQVELEAEQE--------KVEQEKGKNDFGLFSAKFVRRHGLHL 296
K +QA + K++ A Q ++ G L G+ +
Sbjct: 223 SRGKQ-EQAEGILRKIMG-NTLATQALQEIKHSLDHGRKTGGK---LLM------FGVGV 271
Query: 297 IGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAI----EEVYKIARAQTLIALC 352
I V +L V FQ+ +G +N + E++K A T IAL
Sbjct: 272 I---VIGVMLSV-------FQQ----FVG-------INVVLYYAPEIFKTLGASTDIALL 310
Query: 353 STV----PGYWFTVALI---DKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFV 405
T+ FTV I DK GR +Q++G M + MF+L ++ + +
Sbjct: 311 QTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 370
Query: 406 VLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGIS-AASGKAGAIVGA-----FGFL 459
+ Y F S +GP +V+ +EIFP +R I+ AA A V
Sbjct: 371 LFYVAAFAMS-WGP--VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNS 427
Query: 460 YLADTSGVKKALLILGGANFLGMLFTF-LVPESKGKSLEEMSG 501
+L + I G L LF + VPE+KGK+LEEM
Sbjct: 428 WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEMEA 470
|
Length = 479 |
| >gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 3e-13
Identities = 55/233 (23%), Positives = 89/233 (38%), Gaps = 40/233 (17%)
Query: 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVA 77
QW F+A A +G+ DA+D F ++LV + + L A+++ A
Sbjct: 10 QWNAFSA---AWLGWLLDAFDFFLVALVLAEVAGEFG----------LTTVDAASLISAA 56
Query: 78 LCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWL 137
L G L FG GD+ GR+ ++++ +LA G + G IT+ R +
Sbjct: 57 LISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPG------YITMFIARLVI 110
Query: 138 GFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAP 197
G G+GG+Y SA + E K R + + G + VA V +
Sbjct: 111 GIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAV----VAAQVYSLV------- 159
Query: 198 IYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250
VP WR + +P + + R +PE + A A
Sbjct: 160 ----------VPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKA 202
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 405 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 16/166 (9%)
Query: 25 IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAG 84
+++ +GFF D +S LL L + A + G G
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDL----------GLSASQAGLIVSAFSLGYALG 50
Query: 85 QLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGD 144
L G+L D+ GR+RV + L++ + SL + + L RF LG G G
Sbjct: 51 SLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASS------LWLLLVGRFLLGLGGGAL 104
Query: 145 YPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAF 190
YP +A +++E+ K RG + A G G L G ++ +++ +
Sbjct: 105 YPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESL 150
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|182611 PRK10642, PRK10642, proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 4e-10
Identities = 61/241 (25%), Positives = 104/241 (43%), Gaps = 43/241 (17%)
Query: 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLA 83
AI A +G + +D V LG++++ PG P +V +A T +
Sbjct: 17 AITAASLGNAMEWFDFGVYGFVAYALGKVFF-------PGADP-----SVQMIAALATFS 64
Query: 84 --------GQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVM--ITLCFF 133
G LFFG LGDK GR+++ +T+++M I + GL + I L
Sbjct: 65 VPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLC 124
Query: 134 RFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF---AMQGFGILSGGMVAIIVSAAF 190
+ GF +GG+Y ++ ++EY+ + RG F+ + ++ GF +L G+V +I +
Sbjct: 125 KMAQGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGF-VLGAGVVVLISTIVG 182
Query: 191 KANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250
+ANF D+ WRI ++ Y R + ET + V K
Sbjct: 183 EANF----------------LDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLE 226
Query: 251 K 251
+
Sbjct: 227 Q 227
|
Length = 490 |
| >gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 62/246 (25%), Positives = 100/246 (40%), Gaps = 44/246 (17%)
Query: 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNG 75
+ QW F+A A +G+ D +D I+LV + + L A+++
Sbjct: 16 RAQWKAFSA---AWLGYLLDGFDFVLITLVLTEVQGEF----------GLTTVQAASLIS 62
Query: 76 VALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRF 135
A G L G +GD+ GR+ +++++ + +LA G + G TL R
Sbjct: 63 AAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPG------YWTLFIARL 116
Query: 136 WLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFP 195
+G G+ G+Y SAT + E K R A+ F + GF I G +VA
Sbjct: 117 VIGMGMAGEYGSSATYVIESWPKHLRNK--ASGFLISGFSI--GAVVA------------ 160
Query: 196 APIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAA 255
A +YS VP + WR + G +P + + R +PE + A A
Sbjct: 161 AQVYSL-----VVPV--WGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKA--PVR 211
Query: 256 DMSKVL 261
M +L
Sbjct: 212 TMVDIL 217
|
Length = 496 |
| >gnl|CDD|182163 PRK09952, PRK09952, shikimate transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 22/224 (9%)
Query: 31 GFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGW 90
G D YD + L+ ++ + S + GTL A A GV G + FG
Sbjct: 30 GAVVDWYDFLLYGITAALVFNREFFPQVSPAMGTL---AAFATFGVGFLFRPLGGVVFGH 86
Query: 91 LGDKMGRKRVYGMTLMMMVICSLASGL--SFGKEPKAVMITLCFFRFWLGFGIGGDYPLS 148
GD++GRKR+ +T+ MM I + GL SF + L R GF +GG++ +
Sbjct: 87 FGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGA 146
Query: 149 ATIMSEYANKKTRGAFIAAVFAMQGFG-ILSGGMVAIIVSAAFKANFPAPIYSANPAAST 207
A + E A K + + + V G G +LS G+V++I F
Sbjct: 147 ALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQF------------- 193
Query: 208 VPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAK 251
+ WRI +F + L+ + R M E+A + + A
Sbjct: 194 ---LSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA 234
|
Length = 438 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 38/195 (19%), Positives = 61/195 (31%), Gaps = 18/195 (9%)
Query: 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCST 354
L+ + +FLL YY + + + A+ +L L
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE----------AGLLLSLFGLGG- 224
Query: 355 VPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFF 414
+ G L D++GR + L+ + L L +++ L F
Sbjct: 225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL-------LLVALLLLGF 277
Query: 415 SNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLIL 474
+ +E+ P R T G+ G G +G L DT G LIL
Sbjct: 278 GLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLIL 337
Query: 475 GGANFLGMLFTFLVP 489
L L L+P
Sbjct: 338 AALALLAALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|237051 PRK12307, PRK12307, putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 7e-08
Identities = 53/178 (29%), Positives = 78/178 (43%), Gaps = 29/178 (16%)
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
L D + + A G G FG L DK GRK + + +V S+ +GLS G
Sbjct: 50 LTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKP---LMMWSIVAYSVGTGLS-GLASG 105
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
+M+TL RF +G G+ G+Y ++T E K + A+ F + GFGI +
Sbjct: 106 VIMLTLS--RFIVGMGMAGEYACASTYAVESWPKHLKSK--ASAFLVSGFGIGN------ 155
Query: 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242
I++A F +F A Y WR G +P LL Y R + PE+ +
Sbjct: 156 IIAAYFMPSF-AEAYG--------------WRAAFFVGLLPVLLVIYIRARAPESKEW 198
|
Length = 426 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 1e-07
Identities = 60/391 (15%), Positives = 118/391 (30%), Gaps = 81/391 (20%)
Query: 69 VASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMI 128
+ G Q G L D+ GR+RV + L++ + L + +
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASS------LW 86
Query: 129 TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSA 188
L R G G G +P +A +++++ + RG + + A G G G ++ ++++
Sbjct: 87 LLLVLRVLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLAS 146
Query: 189 AFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAK 248
+ WR + AI ALL
Sbjct: 147 L-----------------------FGWRAAFLILAILALL-------------------- 163
Query: 249 NAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDV 308
AA + +L + E+ +R L L+ + +
Sbjct: 164 ----AAVLAALLLPRPPPESKRPKPAEEAPAPLVPAWKLLLRDPVLWLLLALLLFGFA-- 217
Query: 309 AYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTL----IALCSTVPGYWFTVAL 364
F + ++P +EV ++ +A G L
Sbjct: 218 -----------FFALLTYLP------LYQEVLGLSALLAGLLLGLAGLLGAIGRLLLGRL 260
Query: 365 IDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424
D++GR L+ + + LA ++++ L F
Sbjct: 261 SDRLGRRRRLLLALLLLILAALGLA-----LLSLTESSLWLLVALLLLGFGAGLVFPALN 315
Query: 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGA 455
+ +++ P R T G+ +G G +G
Sbjct: 316 ALVSDLAPKEERGTASGLYNTAGSLGGALGP 346
|
Length = 346 |
| >gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 2e-06
Identities = 48/232 (20%), Positives = 92/232 (39%), Gaps = 30/232 (12%)
Query: 20 YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALC 79
+ + + G+ D ++F + V ++ +PD+ + +
Sbjct: 164 FQWALFFVLGLALMADGVEVFVVGFVLP----------SAEKDLCIPDSGKGMLGLIVYL 213
Query: 80 GTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGF 139
G + G F+G L DK+GRK+ +++ S+ +F F R GF
Sbjct: 214 GMMVGAFFWGGLADKLGRKQC------LLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGF 267
Query: 140 GIGGDYPLSATIMSEYANKKTRGAFIA--AVFAMQGFGILSGGMVAIIVSAAFKANFPAP 197
GIGG P+ + +E+ ++ RG ++ +F M G GI + M I+ P
Sbjct: 268 GIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG-GIYAAAMAWAII----------P 316
Query: 198 IYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKN 249
Y + + + + WR+ ++ A P + MPE+ R+ K+
Sbjct: 317 HYGWSFQMGSAYQF-HSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKH 367
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by PFAM model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. Length = 742 |
| >gnl|CDD|182433 PRK10406, PRK10406, alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 60/232 (25%), Positives = 95/232 (40%), Gaps = 27/232 (11%)
Query: 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLA 83
AIV A G + +D + S + I++ S + T A GV G L
Sbjct: 23 AIVGASSGNLVEWFDFYVYSFCSLYFAHIFF---PSGNTTTQLLQTA----GVFAAGFLM 75
Query: 84 ---GQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVM--ITLCFFRFWLG 138
G FG + DK GRK+ +++ MM SL G E L R + G
Sbjct: 76 RPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQG 135
Query: 139 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPI 198
+GG+Y SAT MSE A + +G F A + Q ++ G ++A++V +
Sbjct: 136 LSVGGEYGTSATYMSEVAVEGRKG-FYA---SFQYVTLIGGQLLALLVVVVLQQTL---- 187
Query: 199 YSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250
++ WRI GA+ A++ + R ++ ET++ K A
Sbjct: 188 -------EDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETRALKEA 232
|
Length = 432 |
| >gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 45/183 (24%), Positives = 78/183 (42%), Gaps = 32/183 (17%)
Query: 80 GTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGF 139
G L G L G L D++GRKR+ +++ + + SLA+ ++ +L R G
Sbjct: 62 GLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP------SLLVARLLTGV 115
Query: 140 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIY 199
G+GG P + SE + RG ++ ++ G+ GG +A ++ +
Sbjct: 116 GLGGALPNLIALTSEAVGPRLRGTAVSLMYC----GVPFGGALASVIG----------VL 161
Query: 200 SANPAASTVPEADYIWRIILMFGAIPALLTYYWRMK-MPETARYTALVAKNAKQAAADMS 258
+A AA WR I G + LL M+ +PE+ + A A + A +
Sbjct: 162 AAGDAA---------WRHIFYVGGVGPLLLVPLLMRWLPESRAFAQ--AAGAGKQRAPVL 210
Query: 259 KVL 261
+ L
Sbjct: 211 RAL 213
|
Length = 406 |
| >gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 29/183 (15%), Positives = 63/183 (34%), Gaps = 30/183 (16%)
Query: 70 ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMIT 129
S + + + G + WL + G+KR + + +++ I + + +
Sbjct: 259 FSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFF-LPPGSLWLFLV 317
Query: 130 LCFFRFWLGFGIGGDYPLSATIMS------EYANKKTRGAFIAAVFAMQ---GFGILSGG 180
L G G+G L +++ E+ K R ++++ G +
Sbjct: 318 LVVL---AGIGLGLATLLPWAMLADVVDYGEWKTGKRREGITFSLYSFADKLGGALGGAI 374
Query: 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-----YYWRMK 235
+ ++ A + AN A+ A + I L+F IPA+L
Sbjct: 375 VGLLLAFAGYVAN-----------ATAQS-AAALSGIRLLFTLIPAVLALLALLILRFYP 422
Query: 236 MPE 238
+ +
Sbjct: 423 LTD 425
|
This family is part of the major facilitator superfamily of membrane transport proteins. Length = 425 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 8e-04
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 5/137 (3%)
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
L A + + G + G L G L D++GR+R+ + +++ L
Sbjct: 208 LSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSLAL 267
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
++ L GFG+G +P T+ SE A + RG G G ++A
Sbjct: 268 LLVALLLL-----GFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAG 322
Query: 185 IVSAAFKANFPAPIYSA 201
++ I +A
Sbjct: 323 LLLDTGGYGGVFLILAA 339
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 43/201 (21%), Positives = 78/201 (38%), Gaps = 30/201 (14%)
Query: 36 AYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95
AY + ++ K ++YY+ P + S + +A+ L G L F L K
Sbjct: 230 AYLFYNLAFNIKNGVQVYYFTYVLGDP-----ELFSYMGSIAIGAGLIGVLLFPRLVKKF 284
Query: 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMS-- 153
GRK ++ +++MV+ L F +I + G L +++
Sbjct: 285 GRKILFAGGILLMVLGYL--IFFFAGS-NLPLILVLIILAGFGQNFVT--GLVWALVADT 339
Query: 154 -EYANKKTRGAFIAAVFAMQGF-----GILSGGMVAIIVSAAFKANFPAPIYSANPAAST 207
+Y KT V++++ F L+G +V +I+ Y AN A S
Sbjct: 340 VDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG--------YVANAAQSP 391
Query: 208 VPEADYIWRIILMFGAIPALL 228
+ + I ++ A+PAL
Sbjct: 392 IT----LNGIKILMFAVPALF 408
|
The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family (TC 2.A.2) GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 437 |
| >gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 34/173 (19%), Positives = 67/173 (38%), Gaps = 25/173 (14%)
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
P+ A + + G L G + + L K G+K+++ + L+++ + L + P
Sbjct: 269 DPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFT----PA 324
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMS------EYANKKTRGAFIAAV--FAMQGFGI 176
++ + G G G PL +++ E+ R + + F +
Sbjct: 325 GSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLA 384
Query: 177 LSGGMVAIIVSAA-FKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL 228
L+G + I+ A + N A SA ++ I +F +PALL
Sbjct: 385 LAGFIPGWILGAIGYVPNVSAQSASA------------LFGIRFLFIILPALL 425
|
Length = 467 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 100.0 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 100.0 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 100.0 | |
| PRK03699 | 394 | putative transporter; Provisional | 100.0 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 100.0 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 100.0 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 100.0 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 100.0 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 100.0 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 100.0 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 100.0 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 100.0 | |
| PRK12382 | 392 | putative transporter; Provisional | 100.0 | |
| PRK10504 | 471 | putative transporter; Provisional | 100.0 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 100.0 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 100.0 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 100.0 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 100.0 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 100.0 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 100.0 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 100.0 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 100.0 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 100.0 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 100.0 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 100.0 | |
| PRK11043 | 401 | putative transporter; Provisional | 100.0 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 100.0 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 100.0 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 100.0 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.98 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.98 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.98 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.98 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 99.98 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.98 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.97 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.97 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 99.97 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.97 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.97 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.97 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.97 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.97 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.97 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.97 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.97 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.97 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.96 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.96 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 99.96 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.96 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.96 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.96 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.95 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.95 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.95 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.95 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.95 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.95 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.95 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.95 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.95 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.95 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.94 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 99.94 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.94 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.93 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.93 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.93 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.93 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.9 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.9 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.9 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.9 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.89 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.89 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 99.89 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.88 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 99.87 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.86 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.85 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.85 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.84 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 99.81 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.81 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.79 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 99.76 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.71 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.69 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.65 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 99.58 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.58 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.57 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.55 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.5 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.5 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.49 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.49 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.48 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.48 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.47 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.47 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.45 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.44 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.44 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.43 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.43 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.42 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.42 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.4 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.4 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.39 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.39 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 99.38 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.38 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.38 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.38 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.38 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.38 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.38 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.37 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.37 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.37 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.37 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.37 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.37 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 99.36 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.36 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.36 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.35 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.35 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.35 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.34 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.34 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.34 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.34 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.33 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.33 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.33 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.32 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.31 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.31 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.3 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.3 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.3 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.3 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.28 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.27 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.27 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.26 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.26 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.25 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.25 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.24 | |
| KOG1330 | 493 | consensus Sugar transporter/spinster transmembrane | 99.24 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 99.24 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.23 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.22 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.22 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.22 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.22 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.21 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.21 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.2 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.2 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.2 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.19 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.16 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.16 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.16 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.16 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.14 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.11 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.1 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.08 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.06 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.04 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.04 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 99.04 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.03 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.03 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.03 | |
| KOG0569 | 485 | consensus Permease of the major facilitator superf | 99.02 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.02 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.01 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.0 | |
| KOG2504 | 509 | consensus Monocarboxylate transporter [Carbohydrat | 99.0 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 98.99 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.99 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.98 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.96 | |
| KOG2615 | 451 | consensus Permease of the major facilitator superf | 98.95 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 98.95 | |
| KOG3764 | 464 | consensus Vesicular amine transporter [Intracellul | 98.94 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 98.92 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.9 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.88 | |
| KOG2532 | 466 | consensus Permease of the major facilitator superf | 98.86 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.86 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 98.85 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.84 | |
| KOG4686 | 459 | consensus Predicted sugar transporter [Carbohydrat | 98.82 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.82 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 98.82 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 98.81 | |
| KOG0255 | 521 | consensus Synaptic vesicle transporter SVOP and re | 98.79 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.77 | |
| KOG0253 | 528 | consensus Synaptic vesicle transporter SV2 (major | 98.75 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 98.73 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.72 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.72 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.71 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.67 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 98.66 | |
| KOG3810 | 433 | consensus Micronutrient transporters (folate trans | 98.66 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.6 | |
| KOG0252 | 538 | consensus Inorganic phosphate transporter [Inorgan | 98.6 | |
| KOG0254 | 513 | consensus Predicted transporter (major facilitator | 98.54 | |
| KOG2533 | 495 | consensus Permease of the major facilitator superf | 98.5 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.5 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.47 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.33 | |
| KOG3762 | 618 | consensus Predicted transporter [General function | 98.32 | |
| KOG2325 | 488 | consensus Predicted transporter/transmembrane prot | 98.32 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.26 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 98.24 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.2 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 98.12 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 98.07 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.06 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.01 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 98.01 | |
| KOG2816 | 463 | consensus Predicted transporter ADD1 (major facili | 97.99 | |
| KOG2563 | 480 | consensus Permease of the major facilitator superf | 97.76 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 97.54 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.47 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.47 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 97.32 | |
| KOG3098 | 461 | consensus Uncharacterized conserved protein [Funct | 97.18 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.16 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.15 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.13 | |
| KOG3626 | 735 | consensus Organic anion transporter [Secondary met | 97.09 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.89 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 96.81 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 96.72 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.66 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 96.58 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.53 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.13 | |
| KOG3880 | 409 | consensus Predicted small molecule transporter inv | 96.1 | |
| KOG3097 | 390 | consensus Predicted membrane protein [Function unk | 95.92 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 95.86 | |
| KOG0637 | 498 | consensus Sucrose transporter and related proteins | 95.57 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.38 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 94.74 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 94.15 | |
| KOG3574 | 510 | consensus Acetyl-CoA transporter [Inorganic ion tr | 92.86 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 90.66 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 90.03 | |
| KOG1237 | 571 | consensus H+/oligopeptide symporter [Amino acid tr | 89.59 | |
| KOG1479 | 406 | consensus Nucleoside transporter [Nucleotide trans | 88.88 | |
| KOG4332 | 454 | consensus Predicted sugar transporter [Carbohydrat | 88.02 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 85.22 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 84.19 | |
| KOG2601 | 503 | consensus Iron transporter [Inorganic ion transpor | 82.93 | |
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 82.21 |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-45 Score=365.09 Aligned_cols=482 Identities=61% Similarity=1.012 Sum_probs=339.6
Q ss_pred HHHHcccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 010194 11 ALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGW 90 (515)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~ 90 (515)
..++.+..+++++++.++.++.+.+++|...++.+.|.+.++++.. +.+.+..+.+++.+.+.++..++++++|+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ig~~ig~~~~g~ 78 (502)
T TIGR00887 4 EADTAPFGWQHFRAIVIAGVGFFTDSYDLFCISLVTKMLGYVYYHG-----KGPLPSSVSAAVNGSASIGTLAGQLFFGW 78 (502)
T ss_pred hhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----cccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778889999999999999999999999999999887764211 12466778899999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHH
Q 010194 91 LGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA 170 (515)
Q Consensus 91 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 170 (515)
++||+|||+++.++.+++.+++++++++++......++.++++|+++|++.|...+....+++|++|+++|++++++.+.
T Consensus 79 l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~ 158 (502)
T TIGR00887 79 LADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVFA 158 (502)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHH
Confidence 99999999999999999999999998876532212257899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccH
Q 010194 171 MQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250 (515)
Q Consensus 171 ~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 250 (515)
...+|.++++.++..+...............+.........+++||+.+.+.++++++.++..+++||||+|+..+++++
T Consensus 159 ~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~ 238 (502)
T TIGR00887 159 MQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcch
Confidence 99999999999988775433210000000000000000012357999999998888888888889999999975555544
Q ss_pred HHHHHHHHHHHHhhhhHhhhh---HHHh---hcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHh
Q 010194 251 KQAAADMSKVLQVELEAEQEK---VEQE---KGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAI 324 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (515)
+++.+.+.+..+.+.+++.++ .+++ .+.+.++.++.+..++..+..+.....++...+.+|+...+.|.++++.
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~p~i~~~~ 318 (502)
T TIGR00887 239 EQAASDMSAVLQVKIEAEPDEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDIAFYGVNLNQKVILSAI 318 (502)
T ss_pred HHHHHHHHHHhccccccCcccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHH
Confidence 445555555443221111111 1111 1123444554433333334444444555556667788888899999888
Q ss_pred cccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHH
Q 010194 325 GWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGF 404 (515)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (515)
|+++...+...................++.+++.+++++++||+|||+.++.+..+++++++++....... .....
T Consensus 319 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~----~~~~~ 394 (502)
T TIGR00887 319 GYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL----STHGF 394 (502)
T ss_pred cCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc----chhHH
Confidence 87665322211111111222234445556777888999999999999998888887777776665433111 01112
Q ss_pred HHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc----------cCchHHHHHH
Q 010194 405 VVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT----------SGVKKALLIL 474 (515)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~----------~g~~~~~~~~ 474 (515)
.....+...+...+..+..+.+..|.+|++.|+++.|+.+.+++++++++|.+.+++.+. .++...+.++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~ 474 (502)
T TIGR00887 395 LAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIF 474 (502)
T ss_pred HHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHH
Confidence 222222233344555677788889999999999999999999999999999999999874 3455678888
Q ss_pred HHHHHHHHHHHHhccccCCCChhhhhh
Q 010194 475 GGANFLGMLFTFLVPESKGKSLEEMSG 501 (515)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 501 (515)
+++++++.+..+++||+++++.+|.++
T Consensus 475 ~~~~~~~~i~~~~lpEt~~~~leei~~ 501 (502)
T TIGR00887 475 ALFMFLGILFTLLIPETKGKSLEELSG 501 (502)
T ss_pred HHHHHHHHHHheEeccCCCCCHHhhhC
Confidence 888887777666789999988877644
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=338.22 Aligned_cols=472 Identities=67% Similarity=1.132 Sum_probs=397.1
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
.|+..+.+.+...+.+.++||..+++.+.|.+...+++.++.. .+.++...+.+..+..+|..+|+++.|++.||+||
T Consensus 36 qw~~fk~i~iAG~GfftDsYDlF~I~lVt~il~~lY~~~~~~~--g~~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GR 113 (538)
T KOG0252|consen 36 QWKHFKAIIIAGMGFFTDSYDLFSISLVTKILGYLYYHGDESG--GHYPSGVLALVNAAALVGTIFGQLFFGWLGDKFGR 113 (538)
T ss_pred hHHHHHHHHHhhhhhcccchhhhhHHHHHHHHHHHhcCCCCCC--CcCCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 7788888999999999999999999999999998886655444 56788889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCch-hHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPK-AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
|+++...++++.++++++++....+++ +.+.++...|++.|+|.|+-+|...+..+|....++||...+.+.+..+.|.
T Consensus 114 K~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~Gi 193 (538)
T KOG0252|consen 114 KKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGI 193 (538)
T ss_pred hhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhH
Confidence 999999999999999999988776666 6688999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAAD 256 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 256 (515)
+.|.+++..+...+....+.. .+....+.-||..+-++++++++.+...+.+||++++..+.+++.+.+.++
T Consensus 194 laG~ivt~Iv~~~fe~~~~~~--------~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~~d 265 (538)
T KOG0252|consen 194 LAGGIVALIVSAIFEKIFNGP--------STYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAAGD 265 (538)
T ss_pred hhccHHHHHHHHHHhccCCCC--------CCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhhhc
Confidence 999999988887666433221 111234456999999999999999999999999999976677666666655
Q ss_pred HHHHHHhhhhHhhhhHHH-hhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchh
Q 010194 257 MSKVLQVELEAEQEKVEQ-EKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNA 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
..+....+.+++...... +.+.+...+|.....+++.+.++.....|+...+.+|...+++..++++.|+.+.....
T Consensus 266 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~F~~~f~~~hg~~Llgt~~~WFllDiafy~~nL~~s~I~~~ig~~~~~~~~-- 343 (538)
T KOG0252|consen 266 MKKVLSVDIEAESTAESDVPPPSNSFGLFSRLFLRWHGKHLLGTAGTWFLLDIAFYGQNLFQSVIFSAIGVIPSANTY-- 343 (538)
T ss_pred cccccccccchhhccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHhhccCCCcchH--
Confidence 554444433333322111 22233344566666666778899999999999999999999999999999999887555
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHh
Q 010194 336 IEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFS 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (515)
......+.....+...+.++|.++...++|++|||+..+.+++++.+.++.++....+ ........+...+..++.
T Consensus 344 -~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~---~~~~~Gf~v~y~l~~ff~ 419 (538)
T KOG0252|consen 344 -HELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ---LENTIGFVVLYSLTFFFG 419 (538)
T ss_pred -HHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc---ccccCceeehHHHHHHHH
Confidence 4444566667778888888999999999999999999999999999999888876632 224566778888889999
Q ss_pred hcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh-----ccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 416 NFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD-----TSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
+++.+.....+.+|.+|++.|++..|+...++-.|++++...+.++.+ ..|.+.++++++++++++.+..+++||
T Consensus 420 NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pE 499 (538)
T KOG0252|consen 420 NFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPE 499 (538)
T ss_pred hcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeec
Confidence 999999999999999999999999999999999999999999999999 788999999999999999999999999
Q ss_pred cCCCChhhhhhhhhc
Q 010194 491 SKGKSLEEMSGEAEE 505 (515)
Q Consensus 491 ~~~~~~~~~~~~~~~ 505 (515)
+|+++++|.+++.+.
T Consensus 500 tk~~~leei~~e~~~ 514 (538)
T KOG0252|consen 500 TKGKSLEEISNEEES 514 (538)
T ss_pred ccccCHHHhcChhhc
Confidence 999999988655443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=344.46 Aligned_cols=448 Identities=19% Similarity=0.323 Sum_probs=333.7
Q ss_pred HHHcccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhh
Q 010194 12 LDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWL 91 (515)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l 91 (515)
.++.+..+++|.++++++++.+..+++...++.++|.+.+++ +++..+.+++.+++.++.+++++++|++
T Consensus 156 l~~~~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~----------gls~~~~g~l~s~~~lG~iiG~li~G~L 225 (742)
T TIGR01299 156 IQECGHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDL----------CIPDSGKGMLGLIVYLGMMVGAFFWGGL 225 (742)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566788999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHH
Q 010194 92 GDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 171 (515)
Q Consensus 92 ~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 171 (515)
+||+|||++++++++++++++++++++++ ++.++++|++.|++.|+..+...+++.|++|+++|++.++++..+
T Consensus 226 sDR~GRR~~lii~lil~~i~~ll~afa~s------~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~ 299 (742)
T TIGR01299 226 ADKLGRKQCLLICLSVNGFFAFFSSFVQG------YGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMF 299 (742)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHH
Q 010194 172 QGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAK 251 (515)
Q Consensus 172 ~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 251 (515)
..+|.++++.++..+....+..... .......+||+.+++.++++++.++..+++||+|+|+ ..+++.+
T Consensus 300 ~~iG~ila~~la~~il~~~G~~~~~----------g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL-~~~gr~~ 368 (742)
T TIGR01299 300 WMIGGIYAAAMAWAIIPHYGWSFQM----------GSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFF-LENGKHD 368 (742)
T ss_pred HHHHHHHHHHHHHHHHHhccchhcc----------ccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-HHCCCHH
Confidence 9999999999887776432210000 0001335799999998888888888888999999997 3344556
Q ss_pred HHHHHHHHHHHhhhh-----Hhh------hh--HHH-----hhcC-C---------------cchhhhhhhhhhhhHHHH
Q 010194 252 QAAADMSKVLQVELE-----AEQ------EK--VEQ-----EKGK-N---------------DFGLFSAKFVRRHGLHLI 297 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~-----~~~------~~--~~~-----~~~~-~---------------~~~~~~~~~~~~~~~~~~ 297 (515)
++.+.+++..+.+.. .+. +. .++ +++. + .+..++....++..+..+
T Consensus 369 eA~~iL~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~~~~~~tl 448 (742)
T TIGR01299 369 EAWMILKLIHDTNMRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNPEVREITI 448 (742)
T ss_pred HHHHHHHHHhcCCCCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCccHHHHHH
Confidence 666666655433210 000 00 000 0000 0 001122222223345667
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHh---c-------------------ccCCc-------------ccc---------
Q 010194 298 GTTVTWFLLDVAYYSQNLFQKDIFTAI---G-------------------WIPKA-------------KTM--------- 333 (515)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-------------------~~~~~-------------~~~--------- 333 (515)
.+.+.|++..+.+|+...|.|.+++.. . ++... .+.
T Consensus 449 ~l~~~wf~~~~~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 528 (742)
T TIGR01299 449 KLMGVWFTLSFGYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFED 528 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhccccccccccc
Confidence 788889999999999999999886542 0 00000 000
Q ss_pred -------------------------------h---h-------------------------HHHHHHHHHHHHHHHHhhh
Q 010194 334 -------------------------------N---A-------------------------IEEVYKIARAQTLIALCST 354 (515)
Q Consensus 334 -------------------------------~---~-------------------------~~~~~~~~~~~~~~~~~~~ 354 (515)
+ . .............+..++.
T Consensus 529 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~ 608 (742)
T TIGR01299 529 SLFEECTFDDVTSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAV 608 (742)
T ss_pred ccccccceeeccccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHH
Confidence 0 0 0000112234456667888
Q ss_pred hhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchh
Q 010194 355 VPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR 434 (515)
Q Consensus 355 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 434 (515)
+++.+++++++||+|||+++..+.++.+++++++.+.. +....+++.+ +.+++..+..+..+++++|.+|++
T Consensus 609 i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~-------s~~~ll~~~~-l~g~~~~~~~~~~~a~~aEl~Pt~ 680 (742)
T TIGR01299 609 LPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGN-------SESAMIALLC-LFGGLSIAAWNALDVLTVELYPSD 680 (742)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHc-------cHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCHH
Confidence 99999999999999999999999888888877766543 1222222222 223333334567788999999999
Q ss_pred hhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccccCCCC
Q 010194 435 LRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPESKGKS 495 (515)
Q Consensus 435 ~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (515)
.|++++|+.+....+|.+++|++.+.+.+. +....|++++++.+++.++.+++||++++.
T Consensus 681 ~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~LPET~~~~ 740 (742)
T TIGR01299 681 KRATAFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 999999999999999999999999988764 456778888888888877777889988764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=320.12 Aligned_cols=448 Identities=21% Similarity=0.296 Sum_probs=344.0
Q ss_pred hHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhcc----CCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 20 YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYK----EGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
+-........++.+-++|....+++..+.+.+..... .+.+.+++.-+...+.+++++.+|.++|++..|.++||+
T Consensus 8 ~L~~~~~~~~~gsf~~Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~ 87 (485)
T KOG0569|consen 8 RLLLAVIVATLGSFQFGYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRF 87 (485)
T ss_pred HHHHHHHHHHHhchhhhhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334445556666778888888877765554433111 222222222334567889999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 175 (515)
|||..+.++.++..++.++..++... ..++.++++|++.|+..|......+.++.|..|.+.||......+.+..+|
T Consensus 88 GRK~~l~~~~~l~~~~~~~~~~s~~~---~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g 164 (485)
T KOG0569|consen 88 GRKNALLLSNLLAVLAALLMGLSKSA---PSFEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIG 164 (485)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHH
Confidence 99999999999998888877765432 118999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
.+++..++..-. + .....|++.+.+..+++++.++...++||||+|+..++++++|+.+
T Consensus 165 ~ll~~~~~l~~i--l-------------------Gt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~ 223 (485)
T KOG0569|consen 165 ILLGQVLGLPSL--L-------------------GTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARK 223 (485)
T ss_pred HHHHHHHccHHh--c-------------------CCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHH
Confidence 999977764332 2 2445699999999999999999999999999999777888888888
Q ss_pred HHHHHHHhhhhHhh-----hhHHHh-----hcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhc
Q 010194 256 DMSKVLQVELEAEQ-----EKVEQE-----KGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIG 325 (515)
Q Consensus 256 ~~~~~~~~~~~~~~-----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (515)
.++..++.+.++++ ++.+++ ++.+.++.++++..|+. ..+.+.+.........+....|...++.+.|
T Consensus 224 sl~~y~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~--~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG 301 (485)
T KOG0569|consen 224 ALKFYRGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRP--LLIGIVVSFAQQFSGINAIFFYSTSIFKTAG 301 (485)
T ss_pred HHHHHhCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHH--HHHHHHHHHHHHhcCcceeHHHHHHHHHHcC
Confidence 88888766432211 111111 33345677777777664 3333444444444566677778888888888
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCC--chHH
Q 010194 326 WIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPD--HRIG 403 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 403 (515)
.+++... .......+..++.++++.++.||+|||++++.+..++.++.+++........... ..+.
T Consensus 302 ~~~~~a~------------~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~~~~~y~ 369 (485)
T KOG0569|consen 302 FTPEEAQ------------YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFGSWLSYL 369 (485)
T ss_pred CCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 7766533 2666777778888899999999999999999999999988888776543221111 1223
Q ss_pred HHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 010194 404 FVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGML 483 (515)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 483 (515)
.+....+....++.|..|+.+-+.+|++|++.|..+.++...++++.+++....+..+.+..|. ..|+++.+.+.+..+
T Consensus 370 ~i~~~~~~~~~f~~G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i 448 (485)
T KOG0569|consen 370 CIAAIFLFIISFAIGPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLI 448 (485)
T ss_pred HHHHHHHHHHhhhcCCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHH
Confidence 4556666677888889999999999999999999999999999999999999999999998887 677778888887777
Q ss_pred HHH-hccccCCCChhhhhhhhhcc
Q 010194 484 FTF-LVPESKGKSLEEMSGEAEEE 506 (515)
Q Consensus 484 ~~~-~~~~~~~~~~~~~~~~~~~~ 506 (515)
..+ .+||||+|+..|+.++.+++
T Consensus 449 ~~~~~lPETkgr~~~eI~~~~~~~ 472 (485)
T KOG0569|consen 449 YLYRYLPETKGRTPYEIIEELEKR 472 (485)
T ss_pred HHHHhCcccCCCCHHHHHHHHHhC
Confidence 777 89999999998887776544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=331.06 Aligned_cols=453 Identities=22% Similarity=0.280 Sum_probs=310.5
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
..++..+.+.++.++.+.++++...+++..|.+++++.. ....+.+.+..+.+++.+++.++..++++++|+++||+|
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~G 83 (479)
T PRK10077 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVA--PQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (479)
T ss_pred cchHHHHHHHHHHHHHHhcCcccceehHhHHHHHHHhcc--cccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445667788888889999999999999999999988832 233344788999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCC------CCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFG------KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA 170 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 170 (515)
||++++++.++++++.++++++.- .+....++.++++|+++|++.|...+...++++|++|+++|++++++.+.
T Consensus 84 rr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~ 163 (479)
T PRK10077 84 RRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQF 163 (479)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHH
Confidence 999999999999999888876410 00112256789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccH
Q 010194 171 MQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250 (515)
Q Consensus 171 ~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 250 (515)
+..+|.+++++++..+...... ...+..+||+.|++.+++.++..+..+++||+|+++..+ ++.
T Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~---------------~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~-~~~ 227 (479)
T PRK10077 164 AIIFGQLVVYFVNYFIARSGDA---------------SWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSR-GKQ 227 (479)
T ss_pred HHHHHHHHHHHHHHHHhccCcc---------------cccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHc-CCH
Confidence 9999999998887766421110 012456899999998887777666678899999885332 333
Q ss_pred HHHHHHHHHHHHhhhhH-hhhhHHHh---hcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcc
Q 010194 251 KQAAADMSKVLQVELEA-EQEKVEQE---KGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGW 326 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (515)
+++.+..++..+.+..+ ..++.++. +....+..+. ..............+.....++...++.|.+.++.|.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~ 303 (479)
T PRK10077 228 EQAEGILRKIMGNTLATQALQEIKHSLDHGRKTGGKLLM----FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGA 303 (479)
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHHHHhhhhhhhhcc----hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCC
Confidence 33332222221111100 00000000 0000000000 0000011111111222222334455667777777666
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHH
Q 010194 327 IPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVV 406 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (515)
+.... ........+..+++.+++++++||+|||+.++.+..+.+++.+++...... .........
T Consensus 304 ~~~~~------------~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~---~~~~~~~~~ 368 (479)
T PRK10077 304 STDIA------------LLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---QAPGIVALL 368 (479)
T ss_pred CCchH------------HHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc---CcccHHHHH
Confidence 54321 124445566777888899999999999999999998888887776543311 111122222
Q ss_pred HHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh------hccCchHHHHHHHHHHHH
Q 010194 407 LYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA------DTSGVKKALLILGGANFL 480 (515)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~------~~~g~~~~~~~~~~~~~~ 480 (515)
...+..........+..+.++.|.+|++.|++++|+.+...+++.++++.+.+.+. +..++...|++.++++++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (479)
T PRK10077 369 SMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVL 448 (479)
T ss_pred HHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHH
Confidence 22223333333345677889999999999999999999999999999987777554 467777888888877777
Q ss_pred HHHHHH-hccccCCCChhhhhhhhhcc
Q 010194 481 GMLFTF-LVPESKGKSLEEMSGEAEEE 506 (515)
Q Consensus 481 ~~~~~~-~~~~~~~~~~~~~~~~~~~~ 506 (515)
+.++.+ +.||+|+++.+|.+++.+++
T Consensus 449 ~~~~~~~~~~e~~~~~~~~~~~~~~~~ 475 (479)
T PRK10077 449 AALFMWKFVPETKGKTLEEMEALWEPE 475 (479)
T ss_pred HHHHHHhccccCCCCCHHHHHHHHhhc
Confidence 777666 67888888887776655443
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=301.90 Aligned_cols=405 Identities=17% Similarity=0.214 Sum_probs=319.1
Q ss_pred HcccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010194 14 VAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGD 93 (515)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d 93 (515)
+...+++|+.++...++++...++.+..++...|.+.++. ++|.+|+|.+.+.+++.|.++..+.|.++|
T Consensus 20 ~~~y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~----------~lsk~~lG~i~s~f~i~YG~sKf~~G~~sD 89 (448)
T COG2271 20 DKTYKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDG----------GLSKTQLGILGSAFSITYGVSKFVMGVLSD 89 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3456778889999999999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHH
Q 010194 94 KMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 173 (515)
Q Consensus 94 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 173 (515)
|.+.|+.+.+++++.++.+++++++++ ++.+.+.-+++|..+|...|.+...++.|+|++|||+..++++.+.+
T Consensus 90 r~npr~fm~~gLilsai~nil~Gfs~s------~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shN 163 (448)
T COG2271 90 RSNPRYFMAFGLILSAIVNILFGFSPS------LFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHN 163 (448)
T ss_pred cCCCceeehHHHHHHHHHHHHHhhhhH------HHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhh
Confidence 999999999999999999999999998 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH--HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccH
Q 010194 174 FGILSGGMVA--IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNA 250 (515)
Q Consensus 174 ~G~~~g~~l~--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~ 250 (515)
+|..+.+++. +.+. .+.+||..|++.++.+++ .++.++..+|+|+...+. ..
T Consensus 164 iGGal~~~~~~la~~~-----------------------~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP--~i 218 (448)
T COG2271 164 IGGALAPLVALLAFFA-----------------------FHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP--PI 218 (448)
T ss_pred cccchHHHHHHHHHHH-----------------------hccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC--CH
Confidence 9999999998 6654 334699999998777765 566677889998752111 11
Q ss_pred HHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCC
Q 010194 251 KQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPK 329 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 329 (515)
+| .+++..+.+ +++++.+..+.++.+.+..++. +.+|.+.+......+.-++...|.|.|+.+ .+++..
T Consensus 219 e~-------~~~d~~e~~-~~~~~~~~ls~~~i~~~YVL~N--k~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~ 288 (448)
T COG2271 219 EE-------YRGDPLEIY-EEEKENEGLTAWQIFVKYVLKN--KLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLV 288 (448)
T ss_pred HH-------hhcCchhhh-hhhccCCCccHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHH
Confidence 11 111111111 1111111144566666655544 467888888888888999999999999887 344433
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh--chhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHH
Q 010194 330 AKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI--GRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVL 407 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (515)
. +.......-.++++|++++||++||+ |||....+.+.+.....++. .|..++.++.....
T Consensus 289 ~------------a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~-----~w~~~~~~~~l~~~ 351 (448)
T COG2271 289 K------------ANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVL-----YWLAPNGSYLLDAI 351 (448)
T ss_pred H------------HHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH-----HHcCCCccHHHHHH
Confidence 3 23366677788999999999999996 56655443333322222222 12233344555556
Q ss_pred HHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 408 YSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
.....++...+..-+.-..+.|..|++..|++.|+...+.++ |...+....|++.|.+||...|+++.+.++++.++..
T Consensus 352 ~l~~iGf~IyGPqmLiGl~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~ 431 (448)
T COG2271 352 LLFIIGFLIYGPQMLIGLAAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL 431 (448)
T ss_pred HHHHHHHHHhhHHHHHHHHHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence 666666666666655567789999999999999999999999 9999999999999999999999999888888887776
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=310.42 Aligned_cols=414 Identities=18% Similarity=0.230 Sum_probs=275.2
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCch--hHHHH--HHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 22 FTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPD--NVASA--VNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~--~~~g~--~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
++++...+++.+++++|...++...|.+.++++. +.++ ...+. +.++.++++.+++++.|+++||+||
T Consensus 15 ~~~~~~~~~g~~~~~~d~~~~~~~~~~i~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Gr 86 (490)
T PRK10642 15 RKAITAASLGNAMEWFDFGVYGFVAYALGKVFFP--------GADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGR 86 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4566777889999999999999999999999832 1211 11222 2578889999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHH--HHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVM--ITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~--~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 175 (515)
|+++.++.++++++++++++++++.+.+.+ ..++++|+++|++.|+..+...+++.|++|+++|+++.++...+..+|
T Consensus 87 r~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G 166 (490)
T PRK10642 87 QKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAG 166 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999999999993111100 138999999999999999999999999999999999999999988899
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
..+|+.+...+...... .....+|||+.|++.++++++.+++...+||+|++...+++.+++.
T Consensus 167 ~~lg~~~~~~~~~~~~~---------------~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~-- 229 (490)
T PRK10642 167 FVLGAGVVVLISTIVGE---------------ANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGD-- 229 (490)
T ss_pred HHHHHHHHHHHHHhcCH---------------HHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhc--
Confidence 99888877666533221 0013578999999987776666666678999998732111100000
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccch
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMN 334 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (515)
.+..+++++.+.++.+++ .++.........+.....++....+.|.++++ .|+++..
T Consensus 230 -------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~---- 287 (490)
T PRK10642 230 -------------REGLQDGPKVSFKEIATK-----HWRSLLTCIGLVIATNVTYYMLLTYMPSYLSHNLHYSEDH---- 287 (490)
T ss_pred -------------cccccccccCCHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 000000111222333332 11222222233344456677777888888854 4544321
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFF 414 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (515)
+........++.+++.++.|+++||+|||+.+..+.++..++...+..... ............+....
T Consensus 288 --------~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~g~~ 355 (490)
T PRK10642 288 --------GVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILIN----SNVIGLIFAGLLMLAVI 355 (490)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHH
Confidence 222445566777788889999999999999887776543333222111110 01111111111111111
Q ss_pred hhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHhccccCC
Q 010194 415 SNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTFLVPESKG 493 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (515)
.+. ..+....+..|.+|++.|+++.|+.+.....++.++|.+.+++.+..+ +...+.+..+.++++.+..+++||+++
T Consensus 356 ~~~-~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~ 434 (490)
T PRK10642 356 LNC-FTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETAN 434 (490)
T ss_pred HHH-HHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccC
Confidence 111 123344666789999999999998777778888999999999987654 455555556666666666667788765
Q ss_pred CC
Q 010194 494 KS 495 (515)
Q Consensus 494 ~~ 495 (515)
+.
T Consensus 435 ~~ 436 (490)
T PRK10642 435 RP 436 (490)
T ss_pred CC
Confidence 43
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=313.79 Aligned_cols=436 Identities=25% Similarity=0.361 Sum_probs=302.5
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRK 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr 98 (515)
++.+....++.++.+...++...+++..+.+..++..+ ...+.+.+..+.+++.+++.++..++++++|+++||+|||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr 101 (481)
T TIGR00879 24 WKVALLSLIAAIGGLMFGYDTGVIGGALALPAFEFKFT--SANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRK 101 (481)
T ss_pred HHHHHHHHHHHHHHHhcccccchhhhhhhcHHHHHhcC--CcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhH
Confidence 33344445555667778889999999999998888221 1122346689999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHH
Q 010194 99 RVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILS 178 (515)
Q Consensus 99 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 178 (515)
++++++.+++.++.+++.+..+.. .++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~ 178 (481)
T TIGR00879 102 KSLLIIALLFVIGAILMGLAAFAL---SVEMLIVGRVLLGIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILV 178 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc---chHHHHHHHHHHHhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHH
Confidence 999999999999999986654421 15689999999999999999999999999999999999999999999999999
Q ss_pred HHHHH---HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 179 GGMVA---IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 179 g~~l~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
++.++ ... ....+||+.|++.++..++.++..+++||+|++...+ ++.++..+
T Consensus 179 ~~~~~~~~~~~-----------------------~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 234 (481)
T TIGR00879 179 AYGFGSGKVSL-----------------------NNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGK-GRVEEARK 234 (481)
T ss_pred HHHHHHHhhcC-----------------------CCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHc-CChHHHHH
Confidence 99998 222 2456799999997777777777778899998764222 22222222
Q ss_pred HHHHHHHhhhhH-h----------hhhHHHhh-cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH
Q 010194 256 DMSKVLQVELEA-E----------QEKVEQEK-GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA 323 (515)
Q Consensus 256 ~~~~~~~~~~~~-~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
...+..+.+.++ + ..+.+.+. +...++.++ ...+...+.++...+.++...........+.|.+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (481)
T TIGR00879 235 SLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPSWGSLFS-STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFEN 313 (481)
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhhccccHHHHHh-cCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHH
Confidence 222111100000 0 00000000 111111111 1100112233333333433333344456677777777
Q ss_pred hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC---Cc
Q 010194 324 IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP---DH 400 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 400 (515)
.|++... +........++.+++.++.+++.||++||+.+..+..+..++++++.......... ..
T Consensus 314 ~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
T TIGR00879 314 AGVSTDH------------AFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKSS 381 (481)
T ss_pred cCCCchH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccch
Confidence 7766532 22255666677788899999999999999999888887777776665322111111 01
Q ss_pred hHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHH
Q 010194 401 RIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFL 480 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~ 480 (515)
.........+...+...+..+....+..|.+|++.|++++|+.+...+++++++|.+.+.+.+..++...|++.++++++
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~ 461 (481)
T TIGR00879 382 GNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVL 461 (481)
T ss_pred hHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHH
Confidence 23333344444445555556777788899999999999999999999999999999999999988999999988888888
Q ss_pred HHHHHH-hccccCCCCh
Q 010194 481 GMLFTF-LVPESKGKSL 496 (515)
Q Consensus 481 ~~~~~~-~~~~~~~~~~ 496 (515)
+.++.+ +.+|+|+++.
T Consensus 462 ~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 462 GLIFVYFFLPETKGRTL 478 (481)
T ss_pred HHHHHheecccCCCCCh
Confidence 877776 5677665543
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=305.37 Aligned_cols=400 Identities=13% Similarity=0.134 Sum_probs=279.6
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRK 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr 98 (515)
+.+|+.+..++++++.+++|+..++...|.+.+|+ +++.++.|++.+++.+++++++++.|+++||+|||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~----------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r 73 (412)
T TIGR02332 4 KLFRRLIIFLFILFIFSFLDRINIGFAGLTMGKDL----------GLSATMFGLAATLFYAAYVICGIPSNIMLAIIGAR 73 (412)
T ss_pred eehhHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhc----------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChH
Confidence 45678888899999999999999999999999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHH
Q 010194 99 RVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILS 178 (515)
Q Consensus 99 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 178 (515)
+++..+.+++++++++++++++ ++.+++.|+++|++.+...+....++.|++|+++|++++++++.+.++|.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~ 147 (412)
T TIGR02332 74 RWIAGIMVLWGIASTATMFATG------PESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMAL 147 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHHHHHHHH
Q 010194 179 GGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAKQAAADM 257 (515)
Q Consensus 179 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 257 (515)
++++++.+....+ ..+..|||+.|++.++..++. .+..+++||+|+.. +.-.+++ .+..
T Consensus 148 ~~~~~~~l~~~~~-----------------~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~--~~l~~~~-~~~~ 207 (412)
T TIGR02332 148 GLILSGYILALDG-----------------LMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKA--KWLDEED-KKAL 207 (412)
T ss_pred HHHHHHHHHhCCC-----------------CCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccC--CCCCHHH-HHHH
Confidence 9999988753211 013467999999977776654 44556789988531 0000111 1111
Q ss_pred HHHHHhhh-hHhhhhHH-HhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhc--ccCCcccc
Q 010194 258 SKVLQVEL-EAEQEKVE-QEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIG--WIPKAKTM 333 (515)
Q Consensus 258 ~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 333 (515)
.+..+.+. +.+.++.+ ++++...++.++... + +.++.....+++....++....+.|.++++.+ .++.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~---- 279 (412)
T TIGR02332 208 KEMIDNDQLTLEQPEGAFAHAAMPQRSMLREIF-T---PAIMLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNI---- 279 (412)
T ss_pred HHHHHhccccccccccccccccccHHHHHHHhc-C---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHH----
Confidence 11111000 00000000 000000011112111 1 23455555566666677788889999988742 2221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH-HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHH
Q 010194 334 NAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ-LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTF 412 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (515)
.+........++.+++.++.++++||+++|+.. .....+..++. ++.... ........... ..
T Consensus 280 --------~~~~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~~------~~~~~~~~~~~-~~ 343 (412)
T TIGR02332 280 --------MIGLLAAIPQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLASAT------DHNLIQLLGII-MA 343 (412)
T ss_pred --------HhHHHhhHHHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHHhc------CCHHHHHHHHH-HH
Confidence 122256667777888999999999999977643 33333333332 221111 11111111111 11
Q ss_pred HHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHH
Q 010194 413 FFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGAN 478 (515)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~ 478 (515)
........+..+....|.+|++.|++++|+.+...++|++++|.+.|.+.|..| |+.++.+++++.
T Consensus 344 ~~g~~~~~~~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~ 410 (412)
T TIGR02332 344 SMGSFSAMAIFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL 410 (412)
T ss_pred HHHhhhhhhHHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence 111122223444556788999999999999999999999999999999999875 888887666543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=310.95 Aligned_cols=413 Identities=13% Similarity=0.102 Sum_probs=285.9
Q ss_pred HHHHHcccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHh
Q 010194 10 NALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFG 89 (515)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G 89 (515)
+++.+....+..+.++..++++++..+.++..+++..|.+.+|+ +++.++.|++.+.+.+++.+++++.|
T Consensus 16 ~~~~~~~~~~~~~~i~~~~~~~~~~~y~~r~~~~~~~~~i~~~~----------~~s~~~~g~~~s~~~~~~~~~~~~~G 85 (467)
T PRK09556 16 LEVQRKMWFKPFMQSYLVVFIGYLTMYLIRKNFKAAQNDMISTY----------GLSTTELGMIGLGFSITYGVGKTLVG 85 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34444455566777888899999999999999999999999999 99999999999999999999999999
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHhhh-----cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhH
Q 010194 90 WLGDKMGRKRVYGMTLMMMVICSLASGL-----SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF 164 (515)
Q Consensus 90 ~l~dr~Grr~~l~~~~~~~~i~~~~~~~-----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~ 164 (515)
+++||+|||+++.++.++++++.++.++ +++ ++.+++.|+++|++.+...+...++++||+|+++|+++
T Consensus 86 ~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a 159 (467)
T PRK09556 86 YYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVS------LGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRF 159 (467)
T ss_pred hHhhccCccchHHHHHHHHHHHHHHHHHHHhcccch------HHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeee
Confidence 9999999999999998888887776665 466 89999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhH
Q 010194 165 IAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYT 243 (515)
Q Consensus 165 ~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~ 243 (515)
++++..+.++|.++++++...+..... ..+||..|.+.++..++. ++.+++.+|+|+..
T Consensus 160 ~gi~~~~~~lG~~l~~~i~~~~~~~~~--------------------~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~ 219 (467)
T PRK09556 160 LGFWNISHNLGGAGAGGVALWGANYFF--------------------DGHVIGMFIFPSIIALIIGFIGLRYGSDSPEEL 219 (467)
T ss_pred EEeeecccchhhhHHHHHHHHHHHhhc--------------------cCcchhHHHHHHHHHHHHHHHHHHhCCCChhhc
Confidence 999999999999999988876643211 124999888866666553 44455567776531
Q ss_pred HHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH
Q 010194 244 ALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA 323 (515)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
...+.++. .. .....+.+ .+++++.+..+.++....+. +.++...+..++....++....+.|.++++
T Consensus 220 --~~~~~~~~---~~----~~~~~~~~-~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~p~yl~~ 287 (467)
T PRK09556 220 --GWGKAEEI---FG----EPISEEDK-ETESTDMTKWQIFVEYVLKN--PVIWLLCFANIFLYIVRIGIDNWSPVYAFQ 287 (467)
T ss_pred --CCCChhhc---cc----Cccchhhh-ccccccCcHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111110 00 00000000 00000111112122211111 234555555555556667777888988765
Q ss_pred -hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchH
Q 010194 324 -IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRI 402 (515)
Q Consensus 324 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (515)
.|+++.+. ........++.+++.++.|+++||++||+.......+..++..++.... ..+..
T Consensus 288 ~~g~s~~~a------------~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~ 350 (467)
T PRK09556 288 ELGFSKEDA------------INTFTLFEIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQH-----ATSEY 350 (467)
T ss_pred ccCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHh-----cCcHH
Confidence 56554331 2245556667889999999999999998876655444333322222211 11122
Q ss_pred HHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhh------------ccCchH
Q 010194 403 GFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLAD------------TSGVKK 469 (515)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~------------~~g~~~ 469 (515)
...+..+..+....+........+.|.+|++.+|++.|+.+...++ |.+++|.+.|.+.| ..+|+.
T Consensus 351 -~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~ 429 (467)
T PRK09556 351 -MYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAG 429 (467)
T ss_pred -HHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHH
Confidence 2222222222222222222235567999999999999999999997 77999999999999 578999
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 010194 470 ALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~ 488 (515)
.|.+..++.+++.+..+++
T Consensus 430 ~f~~~~~~~~~~~~~~~~~ 448 (467)
T PRK09556 430 TFAALDIAAIGCICLMAIV 448 (467)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9998888888887766644
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-36 Score=296.95 Aligned_cols=379 Identities=21% Similarity=0.258 Sum_probs=268.4
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
++++++.+..+.++++.++++.....+..|.+.+++ |+++.+.+++.+.+.++..+++++.|+++||+||
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~ 82 (426)
T PRK12307 13 TRPQKNALFSAWLGYVFDGFDFMLIFYIMYLIKADL----------GLTDMEGAFLATAAFIGRPFGGALFGLLADKFGR 82 (426)
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 356677788888999999999999999999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL 177 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 177 (515)
|+++..+.++.+++.++++++++ ++.++++|+++|++.+...+....++.|++|+++|+++.++...+..+|.+
T Consensus 83 r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~ 156 (426)
T PRK12307 83 KPLMMWSIVAYSVGTGLSGLASG------VIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNI 156 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHH
Confidence 99999999999999999999988 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHH
Q 010194 178 SGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADM 257 (515)
Q Consensus 178 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 257 (515)
+++.+.+.+. +..+||+.|++..+..++........||++++. +++.+++
T Consensus 157 ~~~~l~~~l~-----------------------~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~----- 206 (426)
T PRK12307 157 IAAYFMPSFA-----------------------EAYGWRAAFFVGLLPVLLVIYIRARAPESKEWE--EAKLSGK----- 206 (426)
T ss_pred HHHHHHHHHc-----------------------ccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHH--Hhhhhcc-----
Confidence 9998887774 445699999986554444333333456665431 1000000
Q ss_pred HHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHH
Q 010194 258 SKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIE 337 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (515)
+++.++..+..+.+.++.++++.. +.........+......+....+.|.++++.|+++..
T Consensus 207 --------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------- 267 (426)
T PRK12307 207 --------GKHSQSAWSVFSLSMKGLFNRAQF----PLTLCVFIVLFSIFGANWPIFGLLPTYLAGEGFDTGV------- 267 (426)
T ss_pred --------ccccccchhhhhHHHHHHHhhchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-------
Confidence 000000000000112223332222 1112222222222223334455677777766554332
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhc
Q 010194 338 EVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (515)
.........++.+++.++.+++.||++||+....+.++..+..+.+.... ...................
T Consensus 268 -----~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 336 (426)
T PRK12307 268 -----VSNLMTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIP------QDNYLLLGACLFGLMATNV 336 (426)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc------cccHHHHHHHHHHHHHhcc
Confidence 11244556677888999999999999999988877766655544333221 1112212222222222223
Q ss_pred CccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHH
Q 010194 418 GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALL 472 (515)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~ 472 (515)
+..+....++.|.+|++.|++++|+.+...++++.++|.+.|.+.+..|+.....
T Consensus 337 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~ 391 (426)
T PRK12307 337 GVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALT 391 (426)
T ss_pred cHhHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHH
Confidence 3334555677899999999999999999999999999999999999888765433
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=293.70 Aligned_cols=385 Identities=18% Similarity=0.235 Sum_probs=284.1
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
..+++|.++.++++..+.++++....+...|.+.+++ +.++++.+++.+.+.++..+++++.|+++||+|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g 78 (406)
T PRK11551 9 SSSRLALTIGLCFLVALLEGLDLQSAGVAAPRMAQEF----------GLDVAQMGWAFSAGILGLLPGALLGGRLADRIG 78 (406)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3457888889999999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
||+++..+.++.+++.++++++++ ++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|.
T Consensus 79 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 152 (406)
T PRK11551 79 RKRILIVSVALFGLFSLATAQAWD------FPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGG 152 (406)
T ss_pred CchhHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
.+++.++..+. +..+||+.|++.++..++. .+...++||+|++. .++++++..+
T Consensus 153 ~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~ 207 (406)
T PRK11551 153 ALASVIGVLAA-----------------------GDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFA--QAAGAGKQRA 207 (406)
T ss_pred HHHHHHHHHHc-----------------------cccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHH--hccCcchhhh
Confidence 99999987763 4566999999866655443 34456689987652 1111000000
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchh
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNA 335 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (515)
. ..+..++.+..++ ........+......+....+.|.++++.|+++...+.
T Consensus 208 ~----------------------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~-- 259 (406)
T PRK11551 208 P----------------------VLRALFGEGRATA----TLLLWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGL-- 259 (406)
T ss_pred h----------------------hHHHHhhhhhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhH--
Confidence 0 0000111111111 11122222333344555666778888877766554332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHh
Q 010194 336 IEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFS 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (515)
......++.+++.++.|++.||++||+.+..+.....+++..+.... +.+ ...+..+..++.
T Consensus 260 ----------~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~g~~ 321 (406)
T PRK11551 260 ----------VQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAP-------SFA-GMLLAGFAAGLF 321 (406)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-------cHH-HHHHHHHHHHHH
Confidence 55566678888999999999999999988776655555544443221 122 222233333333
Q ss_pred hcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHhc
Q 010194 416 NFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
..+..+..+++..|.+|++.|+++.|+.+....++..++|.+.|.+.+..+ +...+.....+.+++.++.+.+
T Consensus 322 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 322 VVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred HHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 334456677888999999999999999999999999999999999998654 4455555555555555555533
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-37 Score=299.41 Aligned_cols=407 Identities=12% Similarity=0.107 Sum_probs=281.9
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
.+++++.+.....++++...+++..++...|.+.+++ |.+.++.|++.+.+.+++.+++++.|+++||+|
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g 86 (434)
T PRK11663 17 YRYWRRHILITMYLGYALFYFTRKSFNAAMPEMLADL----------GLSRSDIGLLATLFYITYGVSKFVSGIVSDRSN 86 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHhhHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcC
Confidence 3455667777788888888899999999999999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
||+++.++.++.+++.++++++++ ++.+++.|++.|++.|...+...+++.|++|+++|++++++.+.+.++|.
T Consensus 87 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~ 160 (434)
T PRK11663 87 ARYFMGIGLIATGIINILFGFSSS------LWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGG 160 (434)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 89999999999999999899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
.+++.+.+.+. +..|||+.|++.++..++ .++..+++||+|++....+.++.+. +
T Consensus 161 ~~~~~~~~~l~-----------------------~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~ 216 (434)
T PRK11663 161 ALIPLVVGAIA-----------------------LHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRH-D 216 (434)
T ss_pred HHHHHHHHHHH-----------------------HcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCcccccc-c
Confidence 99999999885 345699999987766554 3445566788875411000000000 0
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccch
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMN 334 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (515)
. ++.++..++++.+.++.++....+. +.++...+..+.....++....+.|.++++ .|+++...
T Consensus 217 ~----------~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a--- 281 (434)
T PRK11663 217 A----------LELAQQQEGAGLSRKEILTKYVLLN--PYIWLLSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTA--- 281 (434)
T ss_pred c----------cccchhccccCCChhhhHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHH---
Confidence 0 0000000001112222222211111 223444444444445556666788888743 56655432
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh--chhhHH-HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI--GRFAIQ-LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLT 411 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (515)
........++.+++.++.|+++||+ ++|+.. ........+..+.+.... . ..........+.
T Consensus 282 ---------~~~~~~~~~~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~~~~ 346 (434)
T PRK11663 282 ---------NSAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMP----F--ASYVMQAACFFT 346 (434)
T ss_pred ---------HHHHHHHHHHHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcc----c--ccHHHHHHHHHH
Confidence 2255566677889999999999998 333332 221111121221111111 1 111122122222
Q ss_pred HHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccc
Q 010194 412 FFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPE 490 (515)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 490 (515)
.++...+..........|.+|++.|++++|+.++..++|.+++|.+.|.+.|..||+..|.+.+++.+++.+..+ ..++
T Consensus 347 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~ 426 (434)
T PRK11663 347 IGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNA 426 (434)
T ss_pred HHHHHhhHHHHHHHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222222222223345689999999999999999999999999999999999999999999999888888776665 4444
Q ss_pred cCC
Q 010194 491 SKG 493 (515)
Q Consensus 491 ~~~ 493 (515)
+++
T Consensus 427 ~~~ 429 (434)
T PRK11663 427 QAP 429 (434)
T ss_pred hch
Confidence 433
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=294.63 Aligned_cols=400 Identities=20% Similarity=0.238 Sum_probs=259.5
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHH---HHHHHHHHHHHHHHHHhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASA---VNGVALCGTLAGQLFFGWLGD 93 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~---~~s~~~l~~~i~~~~~G~l~d 93 (515)
.++++++.+..++++.+.+++|+..++...|.+.+++++. +.+..+.+. +.+..+++..++++++|+++|
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~D 88 (432)
T PRK10406 16 DTRRRIWAIVGASSGNLVEWFDFYVYSFCSLYFAHIFFPS-------GNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIAD 88 (432)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666777788899999999999999999999998321 233444333 444555555699999999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhhhcCCCCch--hHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHH
Q 010194 94 KMGRKRVYGMTLMMMVICSLASGLSFGKEPK--AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAM 171 (515)
Q Consensus 94 r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~--~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~ 171 (515)
|+|||+++..+.++++++++++++++++... ..+..++++|+++|++.|+..+...+++.|++|+++|+++.++.+.+
T Consensus 89 r~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~ 168 (432)
T PRK10406 89 KHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVT 168 (432)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHH
Confidence 9999999999999999999999999884210 11246999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHH
Q 010194 172 QGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAK 251 (515)
Q Consensus 172 ~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~ 251 (515)
...|.++++++...+.....+ .....+|||++|++.++++++.+.+...+||+|++. .++.
T Consensus 169 ~~~G~~~~~~~~~~~~~~~~~---------------~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~--~~~~-- 229 (432)
T PRK10406 169 LIGGQLLALLVVVVLQQTLED---------------AELREWGWRIPFALGAVLAVVALWLRRQLDETSQQE--TRAL-- 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCH---------------HHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHH--Hhhh--
Confidence 889988888877666433211 001357899999998888777666666678876531 0000
Q ss_pred HHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCc
Q 010194 252 QAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKA 330 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 330 (515)
++..+.++.++++ +.........+.....++....+.|.++++ .|++..+
T Consensus 230 -----------------------~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~ 280 (432)
T PRK10406 230 -----------------------KEAGSLKGLWRNR------RAFIMVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANV 280 (432)
T ss_pred -----------------------cccccHHHHHhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0011222333221 111112222222345566777788888765 4544322
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHH
Q 010194 331 KTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSL 410 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (515)
.+. ......+...++.++.|+++||++||+.+.....+..+....+.... . ..........+..+
T Consensus 281 -----------~~~-~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 345 (432)
T PRK10406 281 -----------ASG-IMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--Q-NVSSPYAAFGLVMC 345 (432)
T ss_pred -----------HHH-HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--H-cCCcHHHHHHHHHH
Confidence 111 33333444556677889999999999987766554433332221111 0 00111211111111
Q ss_pred HHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHhc
Q 010194 411 TFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
....... ..+..+.+.+|.+|++.|++++|+.+..++. .+...|.+.+.+ +..| +...+++.++..+++.+..+++
T Consensus 346 ~~~~~~~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l 423 (432)
T PRK10406 346 ALLIVSF-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML 423 (432)
T ss_pred HHHHHHH-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 1111111 1234557789999999999999999988775 344577877755 4455 5555665666666666655554
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-36 Score=275.40 Aligned_cols=379 Identities=14% Similarity=0.153 Sum_probs=287.8
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
.++..+..++.+.++.|..+.+...+..++|++.+|+ +.|..+.|+..+.|.++..+++++...+.||+.
T Consensus 7 ~~~~~~~~l~aLa~~~F~igttEfv~~gLLp~iA~dl----------~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~ 76 (394)
T COG2814 7 ARKPMWLALLALALAAFAIGTTEFVPVGLLPPIAADL----------GVSEGAAGQLITAYALGVALGAPLLALLTGRLE 76 (394)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHhchHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3445567788888999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
||++++..+.++.++++++++++| |+.++++|++.|++.|.+++...++..+..|+++|++++++...+.+++.
T Consensus 77 Rr~lLl~~l~lFi~~n~l~alAp~------f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~ 150 (394)
T COG2814 77 RRRLLLGLLALFIVSNLLSALAPS------FAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLAT 150 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
++|.+++.++.+. +|||..|++.+..+++.++ .+..+| |+. ..++...+.
T Consensus 151 v~GvPLGt~ig~~-----------------------~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~--~~~~~~~~~-- 201 (394)
T COG2814 151 VLGVPLGTFLGQL-----------------------FGWRATFLAIAVLALLALLLLWKLLP--PSE--ISGSLPGPL-- 201 (394)
T ss_pred HHhccHHHHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc--CCCCCCcch--
Confidence 9999999999654 5599999998888777544 556678 221 000000000
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccch
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMN 334 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (515)
.+..+.++++. ++......++.....|....|...++++ .|+++...+
T Consensus 202 ----------------------~~~~~~l~~p~-------v~~~l~~t~l~~~g~F~~ftYi~P~L~~v~g~s~~~vs-- 250 (394)
T COG2814 202 ----------------------RTLLRLLRRPG-------VLLGLLATFLFMTGHFALYTYIRPFLESVAGFSVSAVS-- 250 (394)
T ss_pred ----------------------hHHHHHhcCch-------HHHHHHHHHHHHcchhhhHHhHHHHHHHccCCCHhHHH--
Confidence 00111112221 2222333333333445555555555544 555554422
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFF 414 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (515)
+....++++.++|..++|++.|| +.|+.+.....+..+.+..+.+.. .+...........++
T Consensus 251 ----------~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~-------~~~~~~~~~~~~wg~ 312 (394)
T COG2814 251 ----------LVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTG-------ASPALALALLFLWGF 312 (394)
T ss_pred ----------HHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHH
Confidence 27788899999999999999999 888888888777777777765544 122222222222222
Q ss_pred hhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 415 SNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
..............+.. ++.++.+.+++....|+|..+|..+.|.+.|+.|+....++.+.+.+++.++.+...+
T Consensus 313 a~~~~~~~~~~~~a~~~-p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~~~ 387 (394)
T COG2814 313 AFSPALQGLQTRLARLA-PDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLSAR 387 (394)
T ss_pred HhhhhhhHHHHHhcccC-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222222233344433 5889999999999999999999999999999999999999999988888887775433
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-37 Score=306.03 Aligned_cols=382 Identities=21% Similarity=0.351 Sum_probs=278.5
Q ss_pred HHHhhhhhhhhccCCCCCCCCCc---hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCC
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLP---DNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s---~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 120 (515)
+..|.+.+|+ +++ ..+.+++.+++.++..+++++.|+++||+|||++++++.++.+++.++++++++
T Consensus 110 ~~~~~i~~e~----------~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~ 179 (505)
T TIGR00898 110 TFSSTIVTEW----------DLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPN 179 (505)
T ss_pred cccccEEEEe----------cceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHccc
Confidence 5667888888 888 899999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccC
Q 010194 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYS 200 (515)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~ 200 (515)
++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|.++++.++..+.
T Consensus 180 ------~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~------------- 240 (505)
T TIGR00898 180 ------YTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIP------------- 240 (505)
T ss_pred ------HHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh-------------
Confidence 8999999999999999999999999999999999999999999999999999998887662
Q ss_pred CCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhh---Hhh--h--hHH
Q 010194 201 ANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELE---AEQ--E--KVE 273 (515)
Q Consensus 201 ~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~--~~~ 273 (515)
+||+.|++.+++.++..+..+++||+|+|+. .+++.+++.+.+++..+.+.. .+. . +.+
T Consensus 241 -------------~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~-~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (505)
T TIGR00898 241 -------------DWRWLQLAVSLPTFLFFLLSWFVPESPRWLI-SQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD 306 (505)
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHhcCCChHHHH-HCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhh
Confidence 2999999988888777777788999999963 334445555555444332211 000 0 000
Q ss_pred Hh---hcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHH
Q 010194 274 QE---KGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIA 350 (515)
Q Consensus 274 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
.+ ++...+++++++..+. ..+...+.++.....++....+.+.+ +.+. .......
T Consensus 307 ~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------~~~~~~~ 364 (505)
T TIGR00898 307 LSSSKKQYSFLDLFRTPNLRK---TTLCLMMLWFTTAFSYYGLVLDLGNL----GGNI---------------YLDLFIS 364 (505)
T ss_pred hhhccCCCcHHHHhCChHHHH---HHHHHHHHHHHHHHHHHHHhcccccc----CCCh---------------HHHHHHH
Confidence 00 1123344444443332 23333344444444555444333321 1110 1133444
Q ss_pred HhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccccc
Q 010194 351 LCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEI 430 (515)
Q Consensus 351 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (515)
.+..+++.++.+++.||+|||+.+..+.++.+++++++..... ...+...... +...+......+..+.+..|.
T Consensus 365 ~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~e~ 438 (505)
T TIGR00898 365 GLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV-----DLYFLRTALA-VLGKFGITSAFQMVYLYTAEL 438 (505)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCC-----CchHHHHHHH-HHHHHHHHHHHHHHHHHhccc
Confidence 5667788889999999999999999888887777766654321 1112222222 222222223345677888999
Q ss_pred CchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccccCCCChhh
Q 010194 431 FPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPESKGKSLEE 498 (515)
Q Consensus 431 ~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (515)
+|++.|++++|+.++...+|++++|.+.+ + +..++...+.+++++.+++.++.+++||+++++.+|
T Consensus 439 ~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~lpet~~~~l~~ 504 (505)
T TIGR00898 439 YPTVVRNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLFLPETKGVPLPE 504 (505)
T ss_pred ccHHHHhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHcCcCCCCCCCCC
Confidence 99999999999999999999999999999 4 445667788888888888888778889988876543
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-36 Score=291.14 Aligned_cols=394 Identities=18% Similarity=0.208 Sum_probs=277.7
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
+.++++|+.+..++++++.++++....++..|.+.+++ +.+..+.+++.+.+.++..+++++.|+++||+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~ 74 (405)
T TIGR00891 5 HLTRAQWNAFSAAWLGWLLDAFDFFLVALVLAEVAGEF----------GLTTVDAASLISAALISRWFGALMFGLWGDRY 74 (405)
T ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35678889999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 175 (515)
|||++++.+.++.+++.++++++++ ++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+.+..+|
T Consensus 75 g~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g 148 (405)
T TIGR00891 75 GRRLPMVTSIVLFSAGTLACGFAPG------YITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVG 148 (405)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999988 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
..+++.+++.+.+..+ .+||+.|++.++..++.++....+||++++...+ +++++..+
T Consensus 149 ~~~~~~l~~~l~~~~~---------------------~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 206 (405)
T TIGR00891 149 AVVAAQVYSLVVPVWG---------------------DGWRALFFISILPIIFALWLRKNIPEAEDWKEKH-AGKALVRT 206 (405)
T ss_pred HHHHHHHHHHHHHhcC---------------------ccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHh-hhhhhhhh
Confidence 9999999988864322 2499999987777666666667788887652111 11111111
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccch
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMN 334 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (515)
..++..+.+. ..+...++.....+... ++.+..+...................+.|.++.+ .|+++.+.
T Consensus 207 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~--- 276 (405)
T TIGR00891 207 MVDILYGGEH------RIANIVMTLAAAMVQSA-GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTV--- 276 (405)
T ss_pred HHHHHhccch------hhhhhhhhhhHHhhhhh-hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHH---
Confidence 1111110000 00000000000011111 1111112222222222233333444555666543 45544332
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFF 414 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (515)
........++.+++.++.+++.||++||+.+..+..+..+......... .......+.....++
T Consensus 277 ---------~~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 340 (405)
T TIGR00891 277 ---------ANIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFAIG-------ANVAVLGLGLFFQQM 340 (405)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHH
Confidence 1245566677888999999999999999988777655433222221111 112222222222233
Q ss_pred hhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHH
Q 010194 415 SNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLI 473 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~ 473 (515)
...+..+....+..|.+|++.|++++|+.+.+.+++..++|.+.|.+.|..| |+.++..
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~ 400 (405)
T TIGR00891 341 LVQGIWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS 400 (405)
T ss_pred HHccchhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence 3334455666788999999999999999999999999999999999999888 7665544
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=287.55 Aligned_cols=406 Identities=18% Similarity=0.212 Sum_probs=267.3
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHH-----HHHHHHHHHHHHHHhhhh
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVN-----GVALCGTLAGQLFFGWLG 92 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~-----s~~~l~~~i~~~~~G~l~ 92 (515)
.++++.+...+++.+.+++|...++.+.|. +.+++++ +.++. .+++. ++.+++..+++++.|+++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~ 88 (438)
T PRK09952 18 SRARRAALGSFAGAVVDWYDFLLYGITAALVFNREFFP--------QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFG 88 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 345667788888999999999999988875 4555533 33333 34443 455677889999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhH--HHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHH
Q 010194 93 DKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAV--MITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA 170 (515)
Q Consensus 93 dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 170 (515)
||+|||+++..+.++++++++++++++++..... +..++++|+++|++.|+..+....++.|++|+++|++..+....
T Consensus 89 Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~ 168 (438)
T PRK09952 89 DRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSSGVQV 168 (438)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence 9999999999999999999999999999310000 01588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccH
Q 010194 171 MQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250 (515)
Q Consensus 171 ~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 250 (515)
+..+|.+++..+...+....+.. ....+|||++|++.+++.++........||+|++...+++.
T Consensus 169 g~~~G~~l~~~~~~~l~~~~~~~---------------~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~- 232 (438)
T PRK09952 169 GYGVGLLLSTGLVSLISMMTTDE---------------QFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQ- 232 (438)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHH---------------HhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhc-
Confidence 99999999888877765432210 01357899999998877666555556688888652111000
Q ss_pred HHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCC
Q 010194 251 KQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPK 329 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 329 (515)
++. +++.+..+.+ . ++++.........++....++....+.|.++++ .+.+..
T Consensus 233 ~~~---------------------~~~~~~~~~l----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~ 286 (438)
T PRK09952 233 AAA---------------------KKRIPVIEAL----L-RHPGAFLKIIALRLCELLTMYIVTAFALNYSTQNLGLPRE 286 (438)
T ss_pred ccc---------------------cccCCHHHHH----H-HchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHH
Confidence 000 0000111101 1 111112222223333444566666677777654 343321
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHH
Q 010194 330 AKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYS 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (515)
. .........+..+++.++.|+++||+|||+.+..+.++..++...+..... . .+....+....
T Consensus 287 ~------------~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~ 350 (438)
T PRK09952 287 L------------FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE---A-QSIFWIVFFSI 350 (438)
T ss_pred H------------HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH---c-CChHHHHHHHH
Confidence 1 011223334455677788999999999999888776655544333322110 0 11122222222
Q ss_pred HHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhh-hhHHHHHHHHHHhhhcc--CchHHHHHHHHHHHHHHHHHH
Q 010194 410 LTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGK-AGAIVGAFGFLYLADTS--GVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~-~g~~i~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+..++......+..+++..|.+|++.|+++.|+.+.... +++.++|.+.+.+.+.. +|...+.+.+++.+++.+..+
T Consensus 351 ~l~~~~~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~ 430 (438)
T PRK09952 351 MLANIAHDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTAL 430 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence 222222222245567888999999999999999776654 89999999999998844 377777777777787777776
Q ss_pred hcccc
Q 010194 487 LVPES 491 (515)
Q Consensus 487 ~~~~~ 491 (515)
.++++
T Consensus 431 ~~~~~ 435 (438)
T PRK09952 431 LMKDN 435 (438)
T ss_pred Hcccc
Confidence 66653
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-35 Score=293.69 Aligned_cols=437 Identities=25% Similarity=0.345 Sum_probs=322.9
Q ss_pred hHHHHHHHHHHhHHHHHHh--hhHHHHHHhhhhhhhhccCCCCCCCCCch--hHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 20 YHFTAIVIAGMGFFTDAYD--LFCISLVTKLLGRIYYYKEGSDSPGTLPD--NVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
..........++.+..+++ ....++....+.++..... ...+. .+.+++.++..++..+++++.|+++|++
T Consensus 42 ~~~~~~~~~~~~~~~fg~~g~~g~~s~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~ 116 (513)
T KOG0254|consen 42 FVILLALVAALGGLLFGYDGDIGGISGALDFLQRFASLYD-----LSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRI 116 (513)
T ss_pred ehHHHHHHHHHHHHHhCcccccccchhhHHHHHhcccccc-----cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666677777776 5566666666665441111 11222 5679999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 175 (515)
|||+.++++.+++.++.++++++++ +++++++|+++|+|.|......+.+++|..|++.||...+..+....+|
T Consensus 117 GRk~~l~~~~~~~~iG~ii~~~a~~------~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~G 190 (513)
T KOG0254|consen 117 GRKKTLLLAVVLFLIGAIIIALAPS------WYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIG 190 (513)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 8999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
..++..++....+ ..++||..+.+..+++++..+..+++||+|+|+ .++++.+++.+
T Consensus 191 i~~~~~~~~~~~~----------------------~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L-~~~g~~~~a~~ 247 (513)
T KOG0254|consen 191 ILLGYCINYGTSK----------------------VYAGWRIPLGLALIPAVILALGMLFLPESPRWL-IEKGRLEEAKR 247 (513)
T ss_pred HHHHHHHhhhhcc----------------------CCccHHHHHHHHHHHHHHHHHHHHhCCCChHHH-HHcCChHHHHH
Confidence 9999666665521 115799999999999988777788999999997 34556666666
Q ss_pred HHHHHHHhh---hhHhhhhHH-----Hh---hcCC-cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH
Q 010194 256 DMSKVLQVE---LEAEQEKVE-----QE---KGKN-DFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA 323 (515)
Q Consensus 256 ~~~~~~~~~---~~~~~~~~~-----~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (515)
.+.+.++.+ .+.+.++.+ +. +.+. ..++++ +..++ +..+...+..+.....+.....|.+.+++.
T Consensus 248 ~l~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~--~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~ 324 (513)
T KOG0254|consen 248 SLKRLRGLSPEDVEVELELLKIKLLVEAEVAEGKASWGELFS-PKVRK--RLIIGLLLQLFQQLTGINYVFYYSTTIFKS 324 (513)
T ss_pred HHHHHhCCCCcchHHHHHHHHHHHHHhhhcccccccHHHhcC-cchHH--HHHHHHHHHHHHHHhCCceEEeehHHHHHh
Confidence 666666521 111111111 00 1111 222333 21222 234455555555556777788888888888
Q ss_pred hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccC-----C
Q 010194 324 IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL-----P 398 (515)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 398 (515)
.|..... ........+..+++..++.++.||+|||+.++.+...+.+++++++........ .
T Consensus 325 ~g~~~~~-------------~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~ 391 (513)
T KOG0254|consen 325 AGLKSDT-------------FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSK 391 (513)
T ss_pred cCCCCch-------------HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 7766432 114444555566677777999999999999999999999999988876543221 1
Q ss_pred CchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 010194 399 DHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGAN 478 (515)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~ 478 (515)
...+..+...++....+..+..++.|.+.+|.+|.+.|+++.++...+++..+.+....+..+.+..+....|..++.++
T Consensus 392 ~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~ 471 (513)
T KOG0254|consen 392 GAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGIC 471 (513)
T ss_pred chhHHHHHHHHHHHHHHhcccccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 23455566666777777888889999999999999999999999999999998888888887776655345566666666
Q ss_pred HHHHH-HHH-hccccCCCChhhhhhhhhcc
Q 010194 479 FLGML-FTF-LVPESKGKSLEEMSGEAEEE 506 (515)
Q Consensus 479 ~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~ 506 (515)
.+..+ ..+ ++||+|+++.+|.++..+++
T Consensus 472 ~~~~~~fv~~~~pETkg~sleei~~~~~~~ 501 (513)
T KOG0254|consen 472 LLSLIIFVFFFVPETKGLTLEEINELFEEG 501 (513)
T ss_pred HHHHHHHheEEcccCCCCcHHHHHHHHHcC
Confidence 65555 444 88999999999887765443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=281.06 Aligned_cols=374 Identities=10% Similarity=0.062 Sum_probs=264.7
Q ss_pred hHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 010194 20 YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKR 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 99 (515)
++|..+..+.++.+..........+.+|.+.+++ |.+.++.|++.+.+.+++.+++++.|+++||+|||+
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~----------~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~ 75 (390)
T PRK03545 6 VAWLRVVTLALAAFIFNTTEFVPVGLLSDIAQSF----------HMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRK 75 (390)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHcchHHHHhHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 3455455555554554444455666789999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 100 VYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 100 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
++..+.++..+++++++++++ ++.++++|+++|++.+...+...+++.|++|+++|++++++...+.++|..++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig 149 (390)
T PRK03545 76 LLIGLFVLFIASHVLSALAWN------FTVLLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLG 149 (390)
T ss_pred HHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 89999999999999998889999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMS 258 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~ 258 (515)
|++++.+.+ ..|||+.|++.++.+++..+ ....+||.|+. +++ ..+
T Consensus 150 ~~l~~~l~~-----------------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~----~~~---~~~--- 196 (390)
T PRK03545 150 LPLGRVIGQ-----------------------YLGWRTTFLAIGGGALITLLLLIKLLPLLPSE----HSG---SLK--- 196 (390)
T ss_pred hhHHHHHHH-----------------------HhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC----Ccc---hHH---
Confidence 999998853 34599999997777665443 34456665432 000 000
Q ss_pred HHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHH
Q 010194 259 KVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIE 337 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 337 (515)
+.++.++++.. +......++.....+....+.+.+.++ .|+++...
T Consensus 197 --------------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~------ 243 (390)
T PRK03545 197 --------------------SLPLLFRRPAL-------VSLYLLTVVVVTAHFTAYSYIEPFVQQVAGLSENFA------ 243 (390)
T ss_pred --------------------HHHHHHhCcHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccHH------
Confidence 00111222211 111111122222333333444545444 45554432
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhc
Q 010194 338 EVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (515)
........++.+++.++.+++.||++||+.. .+..+..++...+.... ..........+..+....
T Consensus 244 ------~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~~-------~~~~~~~~~~~l~g~~~~ 309 (390)
T PRK03545 244 ------TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLL-IAIALLLVCLLLLLPAA-------NSEWHLSVLSIFWGIAIM 309 (390)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhccchhHHH-HHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHHh
Confidence 2245556677888999999999999987653 44444444333322211 122222233333333333
Q ss_pred CccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 418 GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
...+.......|..| +.+++++|+.+...++|..+||.+.|.+.|..|++..+...+.+.+++.+..+...+
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (390)
T PRK03545 310 CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIFR 381 (390)
T ss_pred cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHcc
Confidence 334445566677776 688999999999999999999999999999999999999998888888777664433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=290.13 Aligned_cols=405 Identities=17% Similarity=0.211 Sum_probs=275.1
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
.++++|+.+..++++.+.+.++....++..|.+.+++ |.+..+.+++.+.+.++..+++++.|+++||+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 83 (496)
T PRK03893 14 LNRAQWKAFSAAWLGYLLDGFDFVLITLVLTEVQGEF----------GLTTVQAASLISAAFISRWFGGLLLGAMGDRYG 83 (496)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3456778888899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
||+++..+.++.+++.++++++++ ++.+++.|++.|++.+...+....++.|++|+++|+++.++...+..+|.
T Consensus 84 ~r~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 157 (496)
T PRK03893 84 RRLAMVISIVLFSVGTLACGFAPG------YWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGA 157 (496)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAAD 256 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 256 (515)
.+++.+++.+. +..+||+.|++.++..++.++....+||++++...+++ ++..+.
T Consensus 158 ~~~~~~~~~l~-----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~ 212 (496)
T PRK03893 158 VVAAQVYSLVV-----------------------PVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAG--KAPVRT 212 (496)
T ss_pred HHHHHHHHHHh-----------------------ccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccc--cccchh
Confidence 99999999884 45679999988666555555555667887654211111 100000
Q ss_pred HHHHHHhhhhHhhhh------------HHHhhcCCcchh-------------hhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010194 257 MSKVLQVELEAEQEK------------VEQEKGKNDFGL-------------FSAKFVRRHGLHLIGTTVTWFLLDVAYY 311 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~------------~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
..+....+....... .-.....+.+.. +......+............+......+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (496)
T PRK03893 213 MVDILYRGEHRIINILLTLAAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSW 292 (496)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccc
Confidence 000000000000000 000000000000 0000000000011111111111111112
Q ss_pred HHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh
Q 010194 312 SQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAI 390 (515)
Q Consensus 312 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 390 (515)
....+.|.+++ +.|+++.+. ........++.+++.++.|++.||++||+.+..+..+..+..+.+..
T Consensus 293 ~~~~~lp~~l~~~~g~~~~~~------------g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~ 360 (496)
T PRK03893 293 PIQALLPTYLKTDLGYDPHTV------------ANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA 360 (496)
T ss_pred hHHHHHHHHHHhhcCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh
Confidence 24456777774 555554332 22556667778889999999999999999887776555544433322
Q ss_pred hhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHH
Q 010194 391 PYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKA 470 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~ 470 (515)
.. ...............+...+..+...++..|.+|++.|++++|+.+....+|..++|.+.|.+.|..|+...
T Consensus 361 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~ 434 (496)
T PRK03893 361 IG------GANVWVLGLLLFFQQMLGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTA 434 (496)
T ss_pred cc------ccHHHHHHHHHHHHHHHhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHH
Confidence 11 112222222222222233333455667788999999999999999999999999999999999999999887
Q ss_pred HHHHHHHHHH
Q 010194 471 LLILGGANFL 480 (515)
Q Consensus 471 ~~~~~~~~~~ 480 (515)
+...++.+.+
T Consensus 435 ~~~~~~~~~~ 444 (496)
T PRK03893 435 LASLSFSLTF 444 (496)
T ss_pred HHHHHHHHHH
Confidence 7665544433
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=247.52 Aligned_cols=429 Identities=21% Similarity=0.394 Sum_probs=325.2
Q ss_pred HHHHcccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 010194 11 ALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGW 90 (515)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~ 90 (515)
.+......+.+|........+++.+.+.....+.+.|.+...+ +.+..+..++......|..+++..||.
T Consensus 66 a~~aigfgrfq~yl~~~ag~gwmad~m~~m~~s~i~~~l~~~w----------~~s~~q~~llt~~v~~gmllga~~w~l 135 (528)
T KOG0253|consen 66 AMNAIGFGRFQWYLFFVAGMGWMADAMEMMLLSLILPALDEVW----------GPSEGQAPLLTLSVFLGMLVGAMVWGL 135 (528)
T ss_pred hhhhcCcccchhhHHHHhhhHHHHHHHHHHHHHHHHHHHHhhh----------chhhhhhhHHHHHHHhhhhhhhhhhhe
Confidence 3444567888999999999999988888888888899999999 899999999999999999999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHH
Q 010194 91 LGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA 170 (515)
Q Consensus 91 l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~ 170 (515)
++|++|||+.+.+......+...+.+.++| +..+++.|.+.|+|.|+ .|...++-.|..|..+|...+-.. .
T Consensus 136 ~~d~~grr~~f~~T~l~t~v~~~is~~spn------f~~L~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~ 207 (528)
T KOG0253|consen 136 SADTIGRRKGFNLTFLVTGVFGVISGASPN------FASLCVFRALWGFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-F 207 (528)
T ss_pred ehhhhhcchhhhhhHHHHHHHHHhhcCCCC------eehhhHHHHHHhccCCC-ccHhHHHHHHhccCcCCCcchhHH-H
Confidence 999999999999999999999999999999 89999999999999999 899999999999999998877666 8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccH
Q 010194 171 MQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNA 250 (515)
Q Consensus 171 ~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~ 250 (515)
.+.+|.+....+...+. .+.||||.......+..+.....+++|||||+. ..+.++
T Consensus 208 ~waig~v~ea~law~vm-----------------------~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~-~~~G~~ 263 (528)
T KOG0253|consen 208 FWAIGQVFEALLAWGVM-----------------------SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY-LAKGDD 263 (528)
T ss_pred HHHHHHHHHHHHHHHHH-----------------------HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh-hhcCCh
Confidence 99999999999998886 445699999888888888888889999999997 455666
Q ss_pred HHHHHHHHHHHHhhh----------------hHhhhhHHH-------hhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHH
Q 010194 251 KQAAADMSKVLQVEL----------------EAEQEKVEQ-------EKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLD 307 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~----------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (515)
+++.+.+++..+.|. ++|..+.++ +...+..+++..+.+ + ..+.....|+...
T Consensus 264 ~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e~~~~~~~~~~a~ke~rg~~~nLlsp~lr-k---ttlllw~iwfgna 339 (528)
T KOG0253|consen 264 YKALETLHKIARMNGKQLPLGVLESSAIDRQEQEESDLDDSKSSAAKEVRGGTTNLLSPKLR-K---TTLLLWRIWFGNA 339 (528)
T ss_pred HHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhhhhchhhhhhccccccccchHhhcChHHH-H---HHHHHHHHHHhhH
Confidence 777777777655331 111111111 111122333333332 2 3566677788888
Q ss_pred HHHHHHhhhhhHHHhHhc-------ccCCcccch-hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHH
Q 010194 308 VAYYSQNLFQKDIFTAIG-------WIPKAKTMN-AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFF 379 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 379 (515)
+.+|+..++...+++.-. ..+.+.... .-..+....+.-.++.....+.|.++.++++||+|||+.+...++
T Consensus 340 fsyyg~VLlttelfqsgd~c~~~~r~~p~e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~ 419 (528)
T KOG0253|consen 340 FSYYGSVLLTTELFQSGDACPLYNRFLPTELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLI 419 (528)
T ss_pred HHHHHHHHHHHHHHhccCccccchhcchhHHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHH
Confidence 899998888877776521 111111110 000111223335666777889999999999999999999999999
Q ss_pred HHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 010194 380 FMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFL 459 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 459 (515)
+.+++.+++.... ......+..+..-.+.. +.+.+.+.|..|++|+..|+++.|.+.....+|+++.|.+.
T Consensus 420 ~f~iflfll~~c~-------~rn~~tvllf~arafis-g~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA- 490 (528)
T KOG0253|consen 420 LFGIFLFLLTTCK-------TRNAYTVLLFTARAFIS-GAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA- 490 (528)
T ss_pred HHHHHHHHHHHhc-------CcchhHHHHHHHHHHHh-chheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH-
Confidence 9888887776544 22223333333333333 34568899999999999999999999999999999999998
Q ss_pred HhhhccCchHHHHHHHHHHHHHHHHHHhc-cccCCCC
Q 010194 460 YLADTSGVKKALLILGGANFLGMLFTFLV-PESKGKS 495 (515)
Q Consensus 460 ~l~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 495 (515)
+........+..+.+.+++++.++..++ .|+|+|.
T Consensus 491 -~~~e~s~sl~i~vy~~~~ilagIavcffPiEtkGR~ 526 (528)
T KOG0253|consen 491 -MRAELSTSLPIFVYGALFILAGIAVCFFPIETKGRS 526 (528)
T ss_pred -HHhccceeehHHHHHHHHHHHHHHheeeeeccCCCC
Confidence 3334445566677778888887777755 4787765
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=273.87 Aligned_cols=357 Identities=11% Similarity=0.030 Sum_probs=246.7
Q ss_pred HHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 010194 36 AYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLAS 115 (515)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~ 115 (515)
......+++.+|.+.+|+ ++|.++.|++.+.+.+++.+++++.|+++||+|||+++..+......+.+..
T Consensus 4 ~~~~~~~~~~lp~i~~~~----------~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~ 73 (368)
T TIGR00903 4 QAIWVTFSPVLSLVAEDI----------DVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL 73 (368)
T ss_pred hHHHHHHHhhHHHHHHHh----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 445567789999999999 9999999999999999999999999999999999998766655554443333
Q ss_pred hhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010194 116 GLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFP 195 (515)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 195 (515)
...++ ++.++++|+++|++.+. .......++|++|+++|++++++.+.+..+|.+++++++..+.
T Consensus 74 ~~~~~------~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~-------- 138 (368)
T TIGR00903 74 LDPFN------YEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIY-------- 138 (368)
T ss_pred HHhcc------HHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 33366 89999999999999986 5666677799999999999999999999999999999999985
Q ss_pred CCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHH
Q 010194 196 APIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQ 274 (515)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (515)
+..|||+.|++.++++++ .++.++++||+|++. .++. +..+ .
T Consensus 139 ---------------~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~--~~~~--~~~~----------------~-- 181 (368)
T TIGR00903 139 ---------------TAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA--AEGF--GFKD----------------A-- 181 (368)
T ss_pred ---------------HccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC--CCCc--chHH----------------H--
Confidence 346699999996666555 455667789988652 1100 0000 0
Q ss_pred hhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhh
Q 010194 275 EKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCST 354 (515)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (515)
.++.++.++++ .++.....+++....++....|.|.++++.+++.. .+. ......+
T Consensus 182 --~~~~~~ll~~~-------~~~~~~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~------------~~~-~~~l~~~-- 237 (368)
T TIGR00903 182 --VKEFGALAGRK-------DLWIIGAILGFGVALFDNLAIWLEAALRPAGLEDI------------AGD-AVALAIL-- 237 (368)
T ss_pred --HHHHHHHHcCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCChH------------HHH-HHHHHHH--
Confidence 00112223222 34556666777777888888999999987664321 011 2222222
Q ss_pred hhHHHHHHHHHHhhchh---hHHHH-HHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccccc
Q 010194 355 VPGYWFTVALIDKIGRF---AIQLM-GFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEI 430 (515)
Q Consensus 355 ~~~~~~~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (515)
.+.+..++++||..|| +.... ...+.++....+.... +....+ ......+++.....+..+++.+|.
T Consensus 238 -~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~ 308 (368)
T TIGR00903 238 -AGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALAFEL-------NRLALF-AFIGIAGLLMLPAYAIIMDWIGKF 308 (368)
T ss_pred -HHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcc-------ccHHHH-HHHHHHHHhhhhhHHHHHHHHHHh
Confidence 2333457788877543 33222 2333333222222111 112222 222222233333345677888999
Q ss_pred CchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 431 FPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 431 ~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
+|++.|+++.|+.+..+++++..+|.+.+.+.. +....|.++++..+++.+....++
T Consensus 309 ~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~~~~ 365 (368)
T TIGR00903 309 CDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIALLLP 365 (368)
T ss_pred cchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999998873 777888888888888777765433
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=280.04 Aligned_cols=369 Identities=16% Similarity=0.192 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHH-HHH-----HHHHHHHHHHHhhhhhh
Q 010194 21 HFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVN-GVA-----LCGTLAGQLFFGWLGDK 94 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~-s~~-----~l~~~i~~~~~G~l~dr 94 (515)
|++....++++.+++++|+..+++..|.+.+++ +.++.+.+.+. +.. .++..+++++.|+++||
T Consensus 13 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~----------~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr 82 (434)
T PRK15075 13 KARAILRVTSGNFLEMFDFFLFGFYATAIAKTF----------FPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDR 82 (434)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Confidence 455778888999999999999999999999999 77776655432 222 23335789999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHH--------HHHHHHHHhhhccccccchhhHhhhhccccccchhHHH
Q 010194 95 MGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMI--------TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIA 166 (515)
Q Consensus 95 ~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~--------~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~ 166 (515)
+|||++++.+.+++++++++++++++ ++ .++++|+++|++.+...+....+++|++|+++|+++++
T Consensus 83 ~Grr~~l~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~ 156 (434)
T PRK15075 83 VGRRKGLIVTLSIMASGTLLIAFVPG------YATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS 156 (434)
T ss_pred hchHHHHHHHHHHHHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence 99999999999999999999999998 44 47899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHH
Q 010194 167 AVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALV 246 (515)
Q Consensus 167 ~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~ 246 (515)
+...+.++|..+++.+++.+....... ..+..|||++|++.++..++........||++++. +
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~---------------~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~--~ 219 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPA---------------QMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFL--A 219 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHH---------------HHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHH--H
Confidence 999999999999999988875432210 01457899999986544333332223344433210 0
Q ss_pred hccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hc
Q 010194 247 AKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IG 325 (515)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 325 (515)
++ ++.+.++.++... ++++.........+.....++....+.|.++++ .|
T Consensus 220 ~~---------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g 270 (434)
T PRK15075 220 RK---------------------------HRPSMREIFRSLA--ANWRIVLAGMLMVAMTTVSFYLITVYTPTFGKTVLH 270 (434)
T ss_pred hh---------------------------hccccccHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 00 0001111111111 111112222222333345566777788888876 56
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH-HHhhhhcccCCCchHHH
Q 010194 326 WIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFA-LAIPYHHWTLPDHRIGF 404 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 404 (515)
+++.+ +........++.+++.++.|+++||+|||+.+..+..+..+.... +.... ........
T Consensus 271 ~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 334 (434)
T PRK15075 271 LSAAD------------SLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLV----AAPSFARM 334 (434)
T ss_pred CCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH----cCCchHHH
Confidence 65432 122455666777888999999999999999877665443322211 11111 01111111
Q ss_pred HHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhccCch
Q 010194 405 VVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADTSGVK 468 (515)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~~g~~ 468 (515)
.....+...+. ....+..+.+..|.+|++.|+++.++.+.+... ++.++|.+.|.+.|..|+.
T Consensus 335 ~~~~~~~~~~~-g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~ 398 (434)
T PRK15075 335 LAVELWLSFLY-GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK 398 (434)
T ss_pred HHHHHHHHHHH-HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence 11111111111 122334456778999999999999997666554 5888999999999988853
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-34 Score=280.79 Aligned_cols=414 Identities=13% Similarity=0.110 Sum_probs=268.7
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
++++|.++..+++.....+.++..++...|.+. +. +.+.++.+++.+.+.+++.+++++.|+++||+||
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~-~~----------g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~ 92 (452)
T PRK11273 24 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQ----------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP 92 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-Hc----------CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC
Confidence 344566666666777777788777788888765 34 6899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL 177 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 177 (515)
|++++.+.++.+++.+++++++... .+++.+++.|++.|++.+...+.....+.|++|+++|++++++++.+.++|..
T Consensus 93 k~~l~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~ 170 (452)
T PRK11273 93 RVFLPAGLILAAAVMLFMGFVPWAT--SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGG 170 (452)
T ss_pred chhHHHHHHHHHHHHHHHHhhhccc--ccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999888764110 01678899999999999988888888999999999999999999999998864
Q ss_pred -HHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHH
Q 010194 178 -SGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 178 -~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
.+++++..+. ...+||+.|++.++..++ .++..+++||+|+.. ..+++++..+
T Consensus 171 ~~~~l~~~~~~-----------------------~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~~~~~ 225 (452)
T PRK11273 171 LPPLLFLLGMA-----------------------WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSC--GLPPIEEYKN 225 (452)
T ss_pred HHHHHHHHHHH-----------------------HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhc--CCCChhhhhh
Confidence 4555443332 113599999997666555 455567788887541 1111111000
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccch
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMN 334 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 334 (515)
+.+++.+ .+++++.+.++.++....+ .+.++...+..++.....+....+.|.++++ .++++..
T Consensus 226 --------~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~---- 290 (452)
T PRK11273 226 --------DYPDDYN-EKHEQELTAKQIFMQYVLP--NKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK---- 290 (452)
T ss_pred --------ccccccc-cccCCCccHHHHHHHHHHc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 0000000 0001111122222221111 1234444455545455666777888998876 4555432
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh--chhhHHH-HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI--GRFAIQL-MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLT 411 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (515)
+........++.+++.++.|+++||+ +||+... ....+..++...+.... ..+.....+ ....
T Consensus 291 --------~~~~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~-~~~~ 356 (452)
T PRK11273 291 --------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLNP-----AGNPTVDMA-CMIV 356 (452)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHhc-----ccChHHHHH-HHHH
Confidence 11244556677788899999999999 4444322 22222222222221111 011111111 1222
Q ss_pred HHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHH-HHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 412 FFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIV-GAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
.+....+.......+..|.+|++.||+++|+.+...++|+.+ +|.+.|.+.|..||+..|.+++++++++.+......+
T Consensus 357 ~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~ 436 (452)
T PRK11273 357 IGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 436 (452)
T ss_pred HHHHHHhHHHHHHHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 222222222223345679999999999999999999998765 7999999999999999999888888888777774444
Q ss_pred cCCCChhh
Q 010194 491 SKGKSLEE 498 (515)
Q Consensus 491 ~~~~~~~~ 498 (515)
.++|+.+|
T Consensus 437 ~~~~~~~~ 444 (452)
T PRK11273 437 GEKRHHEE 444 (452)
T ss_pred cccchHHH
Confidence 33443333
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=273.65 Aligned_cols=377 Identities=12% Similarity=0.056 Sum_probs=270.2
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 010194 21 HFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRV 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~ 100 (515)
.|.....++.+.+..... ..+++..|.+++|+ ++|.++.+++.+.+.+++.+++++.|+++||+|||++
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~~~~lp~i~~~~----------~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~ 76 (393)
T PRK09705 8 NFMLLVLVLIGLNMRPLL-TSVGPLLPQLRQAS----------GMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRS 76 (393)
T ss_pred HHHHHHHHHHHHHcchhh-hccchhHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHH
Confidence 344444555554443333 66789999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 010194 101 YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180 (515)
Q Consensus 101 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~ 180 (515)
+..+..+++++.++++++++ ++.++++|+++|++.+...+....++.|++| ++|+++++++..+..+|..+|+
T Consensus 77 l~~~~~l~~~~~~~~~~a~~------~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~ 149 (393)
T PRK09705 77 VAISLLLIAVGALMRELYPQ------SALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGA 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHCcc------hHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 7899999999999999999999999999997 7799999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhc-CCchhhHHHHhccHHHHHHHHHH
Q 010194 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKM-PETARYTALVAKNAKQAAADMSK 259 (515)
Q Consensus 181 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~ 259 (515)
.+++.+.+.. .+||+.+.+.++..++.....+.. ++.|+. ++
T Consensus 150 ~~~~~l~~~~----------------------~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---------- 192 (393)
T PRK09705 150 AITPWLVQHS----------------------ETWYQTLAWWALPAVVALFAWWWQSAREVAS-----SH---------- 192 (393)
T ss_pred HHHHHHHHhc----------------------CCHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----cc----------
Confidence 9998875321 359998877555544433333222 221110 00
Q ss_pred HHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHH
Q 010194 260 VLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEV 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
+++.+.++.++++ ..+...+..+.....++....+.|.++++.|+++...+.
T Consensus 193 ---------------~~~~~~~~~l~~~-------~~~~l~~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~------ 244 (393)
T PRK09705 193 ---------------KTTTTPVRVVFTP-------RAWTLGVYFGLINGGYASLIAWLPAFYIEIGASAQYSGS------ 244 (393)
T ss_pred ---------------CCCcCCcccccCH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhH------
Confidence 0000111111111 122233333444456667777888888877766554332
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCc
Q 010194 340 YKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (515)
......++.++++++.+++.||++||+....+..+..++..++.... ..... ... .+ .+......
T Consensus 245 ------~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~-~~~-~l-~g~g~g~~ 309 (393)
T PRK09705 245 ------LLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP------LQLPV-LWA-MV-CGLGLGGA 309 (393)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc------chHHH-HHH-HH-HHHhccch
Confidence 56677788899999999999999999988887776666655443221 11111 111 11 22222233
Q ss_pred cccccccccccC-chhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHH-hccccCCCC
Q 010194 420 NTTTFVVPAEIF-PARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTF-LVPESKGKS 495 (515)
Q Consensus 420 ~~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 495 (515)
.+.......+.. |++.+++.+|+.+...+++..++|.+.|++.|..| +...|.+..+++++..++.. +.+|++++.
T Consensus 310 ~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 310 FPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 444444555655 46789999999999999999999999999999876 77778877777777666655 667766554
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=276.51 Aligned_cols=388 Identities=22% Similarity=0.331 Sum_probs=270.5
Q ss_pred HHcccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhh
Q 010194 13 DVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLG 92 (515)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~ 92 (515)
++.+.++++|+.+..+.+..+..+++....++..|.+.+++ |.+..+.+++.+.+.++..+++++.|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 76 (398)
T TIGR00895 7 RKQPLSRYQWRAIILSFLIMLMDGYDLAAMGFAAPAISAEW----------GLDPVQLGFLFSAGLIGMAFGALFFGPLA 76 (398)
T ss_pred hhCCCcchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhcc----------CCCHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33445566777777777888888888888999999999999 99999999999999999999999999999
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHH
Q 010194 93 DKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ 172 (515)
Q Consensus 93 dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 172 (515)
||+|||+.+..+.++.+++.++..++++ ++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.
T Consensus 77 d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 150 (398)
T TIGR00895 77 DRIGRKRVLLWSILLFSVFTLLCALATN------VTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGY 150 (398)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHccc------hHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHH
Confidence 9999999999999999999999999888 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHH-HHHHHHHHhcCCchhhHHHHhccHH
Q 010194 173 GFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPA-LLTYYWRMKMPETARYTALVAKNAK 251 (515)
Q Consensus 173 ~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~-~~~~~~~~~~~e~p~~~~~~~~~~~ 251 (515)
.+|..+++.+++.+. +..+||+.|++.++.. +...+..+++||++++. .+++.+
T Consensus 151 ~~g~~~~~~~~~~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 205 (398)
T TIGR00895 151 PIGAAVGGFLAGWLI-----------------------PVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL--VSKRPE 205 (398)
T ss_pred HHHHHHHHHHHHHHh-----------------------hcccceeehhhhhhHHHHHHHHHHHhCCCCChHH--HhcCHH
Confidence 999999999998885 4456999999875444 44555567789987653 222222
Q ss_pred HHHHHHHHHHHhhhhHhhhhHHH--hhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCC
Q 010194 252 QAAADMSKVLQVELEAEQEKVEQ--EKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPK 329 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (515)
+..+..++....+.+++.++.++ ++++..++..+....++..+..+......+.....++....+.|.+.++.++++.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 285 (398)
T TIGR00895 206 TVRRIVNAIAPQMQAEAQSALPEQKATQGTKRSVFKALFQGKTARITVLLWLLYFMLLVGVYFLTNWLPKLMVELGFSLS 285 (398)
T ss_pred HHHHHHHHHHHhccccccccccccccccchhhHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 22222222211111110000000 0011111111111111112223333333344445566666777777766666554
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHH
Q 010194 330 AKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYS 409 (515)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (515)
..+ .......++.+++.++.+++.||++||+... ...+..+...++.... .+.... ....
T Consensus 286 ~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~-~~~~ 345 (398)
T TIGR00895 286 LAA------------TGGALFNFGGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTL------FSPTLL-LLLG 345 (398)
T ss_pred HHH------------HHHHHHHHHHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHh------hCHHHH-HHHH
Confidence 322 2556666778889999999999999984443 3333333333332211 112222 2222
Q ss_pred HHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHh
Q 010194 410 LTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYL 461 (515)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l 461 (515)
+..+.......+...++..|.+|++.|+++.|+.+.+..+|..++|.+.|.+
T Consensus 346 ~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 346 AIAGFFVNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 3333333334566778899999999999999999999999999999999875
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-34 Score=274.53 Aligned_cols=377 Identities=12% Similarity=0.085 Sum_probs=275.1
Q ss_pred hHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 010194 20 YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKR 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 99 (515)
++++....++++++..+.+....++.+|.+.+++ ++|.++.+++.+.+.+++.+++++.|++.||+|||+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~----------~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~ 73 (394)
T PRK03699 4 NRIKLTWISFLSYALTGALVIVTGMVMGPIAEYF----------NLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKR 73 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4566777778888999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 100 VYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 100 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
++..+.++.+++.++++++++ ++.+++.|+++|++.+...+...+++.|++|+++|+++++..+....+|..++
T Consensus 74 ~~~~~~~~~~i~~~l~~~~~~------~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~ 147 (394)
T PRK03699 74 QLIFGFALMILAVAGLMFSHS------LALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIF 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcch------HHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988 89999999999999999889999999999999999999999888889999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSK 259 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 259 (515)
|.+.+.+.. +..+||+.|.+.++..++..++.++ .+.|+. .++++ +
T Consensus 148 ~~~~~~l~~----------------------~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~-~-------- 193 (394)
T PRK03699 148 PIIAAYLLA----------------------RSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP-K-------- 193 (394)
T ss_pred HHHHHHHHh----------------------ccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc-c--------
Confidence 988877641 3457999999877766654444333 222221 00000 0
Q ss_pred HHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHH
Q 010194 260 VLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEE 338 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 338 (515)
+++... +.. .+ +.++...+..++....++....+.|.++++ .|+++.+.+.
T Consensus 194 ---------------~~~~~~----~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~----- 245 (394)
T PRK03699 194 ---------------ADKPVA----KEK-WG---IGVLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGN----- 245 (394)
T ss_pred ---------------ccCccc----ccc-CC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhH-----
Confidence 000000 000 01 122333334444445566677888988865 4665544222
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcC
Q 010194 339 VYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (515)
......++..+++++.++++||+++|+.+.....+..+...++.... +..... ...+..++...+
T Consensus 246 -------~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~~~G~~~~~ 310 (394)
T PRK03699 246 -------LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFVNTD-------DPSHLL-YAILGLGFFSSA 310 (394)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHcC-------CchHHH-HHHHHHHHHHHH
Confidence 44555667788999999999999999988776666555444433211 122222 222233333333
Q ss_pred ccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 419 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
..+...+...|..| +.+++..+......++|..++|.+.|++.|..|++..++..+++++++.+......+
T Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 311 IYTTIITLGSQQTK-VASPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred HHHHHHHHHHHHcc-CCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 34555556667665 446777889999999999999999999999999999998888888877766664443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=272.48 Aligned_cols=376 Identities=14% Similarity=0.019 Sum_probs=261.5
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 010194 23 TAIVIAGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVY 101 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l 101 (515)
+.+..+.+..+...++..+..+.+|. +.+++ +.|..+.|++.+++.+++.+++++.|+++||+|||+++
T Consensus 15 ~~~~~l~~~~~~~~~~~~~~~~~l~~~i~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l 84 (399)
T PRK05122 15 LRIVSIVMFTFISYLTIGLPLAVLPGYVHDQL----------GFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAV 84 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchH
Confidence 34445566667777777778888886 67788 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCC--chhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMMVICSLASGLSFGKE--PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~--~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
..+.++++++.+.+.++...+ ....++.+++.|+++|++.+...+...+++.|++|+++|++++++...+..+|.++|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 164 (399)
T PRK05122 85 VFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIG 164 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHH
Confidence 999999888877665542100 001166899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSK 259 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 259 (515)
+.+++.+. +..|||+.+++.++..++..+.....|++++. +++ +
T Consensus 165 ~~l~~~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~-------- 208 (399)
T PRK05122 165 APLGVLLY-----------------------HWGGLAGLGLLIMLLALLGLLLARPRPAVPPV----KGE-R-------- 208 (399)
T ss_pred HHHHHHHH-----------------------HcccHHHHHHHHHHHHHHHHHHHhcCCCCCCC----Ccc-c--------
Confidence 99999885 34569999887666555443333323332210 000 0
Q ss_pred HHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHH
Q 010194 260 VLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEV 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
.+.++.++.. +. ...........+.....+.+.+..+.++.. .
T Consensus 209 ------------------~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 251 (399)
T PRK05122 209 ------------------LPFRRVLGRV--WP-------YGMGLALASIGFGTIATFITLYYAARGWDG--A-------- 251 (399)
T ss_pred ------------------hhHHHHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHHHHHHccccc--c--------
Confidence 0000111100 00 001111112233344455565555544411 0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCc
Q 010194 340 YKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (515)
........++.+++.++.+++.||+++|+.+..+..+..++.+++.... +.+... ...++.+++....
T Consensus 252 ----~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~~~l~G~~~~~~ 319 (399)
T PRK05122 252 ----ALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAP-------SPWMAL-IGAALTGFGFSLV 319 (399)
T ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhc-------cHHHHH-HHHHHHHHhHHHH
Confidence 1123445566777888999999999999988887777776665554322 122222 2222333322223
Q ss_pred cccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccccCC
Q 010194 420 NTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPESKG 493 (515)
Q Consensus 420 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (515)
.+.......|..|++.|+++.|+.+...++|..+++.+.|.+.+..|++..+.+.+++++++.+..++++++++
T Consensus 320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (399)
T PRK05122 320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYRRAP 393 (399)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 44445566788999999999999999999999999999999999999999999988888888777766655444
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=277.26 Aligned_cols=368 Identities=16% Similarity=0.094 Sum_probs=257.0
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTL 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~ 105 (515)
....+..+..+ .+..+++..|.+.+++ |++.++.+++.+++.+++.+++++.|+++||+|||+++..+.
T Consensus 7 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~ 75 (377)
T TIGR00890 7 VGTVIMCFTSG-YVYTWTLLAPPLGRYF----------GVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGG 75 (377)
T ss_pred HHHHHHHHHhh-HHhhhhhHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhH
Confidence 33333333333 3567789999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010194 106 MMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAII 185 (515)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 185 (515)
++.+++.++++++++ ++.++++|++.|++.+...+.....+.|++| ++|+++.++...+.++|..+++++...
T Consensus 76 ~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~ 148 (377)
T TIGR00890 76 ILYGLGFTFYAIADS------LAALYLTYGLASAGVGIAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITS 148 (377)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHH
Confidence 999999999999998 8999999999999999888888889999997 569999999999999998876666655
Q ss_pred HHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCchhhHHHHhccHHHHHHHHHHHHHhh
Q 010194 186 VSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETARYTALVAKNAKQAAADMSKVLQVE 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
+. +..+||+.|++.++..++..+. .++++|+|+. ..+++ ++.
T Consensus 149 ~~-----------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~----------- 191 (377)
T TIGR00890 149 VI-----------------------NLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQ--LIKTN-IEV----------- 191 (377)
T ss_pred HH-----------------------hcccHHHHHHHHHHHHHHHHHHHHHheecCchh--ccccC-ccc-----------
Confidence 53 3456999999977776665443 4455554432 00000 000
Q ss_pred hhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHH
Q 010194 265 LEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIAR 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
++++.+.++.++++. .+......+...........+.+.+.++.++++.. ..
T Consensus 192 ---------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 243 (377)
T TIGR00890 192 ---------SVKDYTVWEMLRTPQ-------FWVLYLSFFLNAVSGLLLIGLYKPYGQSLGLSDGF------------LV 243 (377)
T ss_pred ---------chhhhhHHHHHcCcc-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCHHH------------HH
Confidence 000001111222211 11122222222222222333344454555543221 22
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 345 AQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
.......++.+++.++.+++.||++||+.+..+..+..++.+++..... .............+.......+...
T Consensus 244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~g~~~~~~~ 317 (377)
T TIGR00890 244 LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPM------LNDVLFLATVALVFFTWGGTISLFP 317 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHccc------chhHHHHHHHHHHHHHhccchhccH
Confidence 2455666778889999999999999999988887777777665543321 1111111112222222223344556
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGM 482 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 482 (515)
.+..|.+|+++|+++.|+.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.
T Consensus 318 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~~ 375 (377)
T TIGR00890 318 SLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTSL 375 (377)
T ss_pred HHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHhc
Confidence 6788999999999999999999999999999999999999999999988877776654
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=275.77 Aligned_cols=397 Identities=14% Similarity=0.087 Sum_probs=256.0
Q ss_pred cccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010194 15 AKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK 94 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr 94 (515)
.+..+++++.+...+...+...++...+++..|.+.+++ |++.++.+++.+.+.+++.+++++.|+++||
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr 97 (476)
T PLN00028 28 FSFARPHMRAFHLSWISFFTCFVSTFAAAPLLPIIRDNL----------NLTKSDIGNAGIASVSGSIFSRLAMGPVCDL 97 (476)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444566666666777777777788889999999999 9999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH
Q 010194 95 MGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF 174 (515)
Q Consensus 95 ~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 174 (515)
+|||+++..+.++++++.++++++++ ++.++++|+++|++.+.. .....+++|++|+++|++++++.....++
T Consensus 98 ~G~r~~~~~~~~~~~~~~~~~~~~~s------~~~l~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~a~g~~~~~~~~ 170 (476)
T PLN00028 98 YGPRYGSAFLLMLTAPAVFCMSLVSS------ATGFIAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGTANGIAAGWGNL 170 (476)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHhcC------HHHHHHHHHHHHHHHHhh-HHHHHHHHHhcChhheeHHHHHHHHHHHH
Confidence 99999999999999999999999988 789999999999988764 45667899999999999999999888888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcC-CchhhHHHHhccHHHH
Q 010194 175 GILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMP-ETARYTALVAKNAKQA 253 (515)
Q Consensus 175 G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~ 253 (515)
|..+++.+.+.+........ ..+..|||+.|++.+++.++..+..++++ +.|+.. .++.
T Consensus 171 g~~~~~~~~~~i~~~~~~~~--------------~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~~~------~~~~ 230 (476)
T PLN00028 171 GGGVTQLLMPLVFPLIKDAG--------------APSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPDGN------YREL 230 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcC--------------CcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCCCc------hhhH
Confidence 88888777766543322100 01235799999998777766544444444 444210 0000
Q ss_pred HHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCccc
Q 010194 254 AADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKT 332 (515)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 332 (515)
.+ + .+.++.+..+.++.....+ ..+...+.++......+....+.|.++.+ .|+++..
T Consensus 231 ~~------------~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~-- 289 (476)
T PLN00028 231 KK------------S----GTMPKDSFSKVLRYGVTNY---RTWILALTYGYSFGVELTMDNIIAEYFYDRFGLSLET-- 289 (476)
T ss_pred Hh------------c----CccccccHHHHHHHHHcCc---hhHHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHH--
Confidence 00 0 0000011111122211111 12333333333333334455566666544 3554332
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhh-------HHHHHHHHHHHHHHHHHhhhhcccCCCchHHHH
Q 010194 333 MNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFA-------IQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFV 405 (515)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (515)
+........++.+++++++|+++||++||+ .......+.+++.+++... .+.....
T Consensus 290 ----------a~~~~~~~~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~~-------~~~~~~~ 352 (476)
T PLN00028 290 ----------AGAIAASFGLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGRA-------NSLGAAI 352 (476)
T ss_pred ----------HHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhccc-------chHHHHH
Confidence 222556667788889999999999998752 1122222222222211111 1112222
Q ss_pred HHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 010194 406 VLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFT 485 (515)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 485 (515)
....+...+.. ...+..+++..+..| +.+|++.|+.+..+++|++++|.+.+ ..+..+|+..|++.+++.+++.++.
T Consensus 353 ~~~~l~~~~~~-~~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~ 429 (476)
T PLN00028 353 VVMILFSIFVQ-AACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPV 429 (476)
T ss_pred HHHHHHHHHHH-HhhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHH
Confidence 22222222221 123345566667655 78999999998888888888887765 2234468899999998888888877
Q ss_pred Hhcc
Q 010194 486 FLVP 489 (515)
Q Consensus 486 ~~~~ 489 (515)
++.+
T Consensus 430 ~~~~ 433 (476)
T PLN00028 430 AFIH 433 (476)
T ss_pred Hhee
Confidence 7554
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=274.60 Aligned_cols=390 Identities=15% Similarity=0.181 Sum_probs=269.3
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 010194 32 FFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVIC 111 (515)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~ 111 (515)
++...+++..++...|.+.+++ |.+..+.+++.+++.++..+++++.|+++||+|||+++..+.++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~ 72 (399)
T TIGR00893 3 TVINYLDRANLSFAAPMLQEDL----------GLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVF 72 (399)
T ss_pred ehHHHHHHHhhhHhHHHHHHhh----------CCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHH
Confidence 4566788889999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010194 112 SLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFK 191 (515)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 191 (515)
.++++++++ ++.++++|++.|++.+...+....++.|++|+++|++++++......+|.++++.+++.+.
T Consensus 73 ~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~---- 142 (399)
T TIGR00893 73 TGLQAFAGA------YVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWIL---- 142 (399)
T ss_pred HHHHHHHcC------HHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHH----
Confidence 999999998 8999999999999999999999999999999999999999999999999999999999875
Q ss_pred cCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhh
Q 010194 192 ANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQE 270 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (515)
+..+||+.|++.++..++..+ ..++.||+|+.. +..++++.....++.. .+.
T Consensus 143 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-----~~~- 195 (399)
T TIGR00893 143 -------------------IHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKA--KWLTEEEKYIVVGGLL-----AEQ- 195 (399)
T ss_pred -------------------HhCCchHHHHHHHHHHHHHHHHhhheecCCCCcc--ccCCHHHHhhcchhhc-----ccc-
Confidence 345599999987776665444 445567765431 1111111110000000 000
Q ss_pred hHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHH
Q 010194 271 KVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLI 349 (515)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (515)
+ ++++++..++..++...++ .++......+...........+.|.++++ .++++... ......
T Consensus 196 ~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~ 259 (399)
T TIGR00893 196 Q-GKGPSTPKKYQIKELLKDR---RVWGLALGQFLVNIGLGFFLTWFPTYLVQERGLSILEA------------GFMASL 259 (399)
T ss_pred c-cccccCCCccchHHHhcCH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccHHHh------------hHHHHH
Confidence 0 0011111111111111111 23334444444455566666677777654 44443322 225556
Q ss_pred HHhhhhhHHHHHHHHHHhhchhhHHH-HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccc
Q 010194 350 ALCSTVPGYWFTVALIDKIGRFAIQL-MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPA 428 (515)
Q Consensus 350 ~~~~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (515)
..++.+++.++.+++.||++||+... .......++.+........... ........... .......+..+..+++..
T Consensus 260 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 337 (399)
T TIGR00893 260 PGIVGFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY-VNIPYAALALV-ALGFFGLGAGAIGWALIS 337 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc-chhHHHHHHHH-HHHHhchhhhhHHHHHHH
Confidence 66777889999999999999986211 1111111111111111000000 11122222222 222233335678888999
Q ss_pred ccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHH
Q 010194 429 EIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 429 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 486 (515)
|..|++.|++++|+.+.+.++|..++|.+.|.+.|..| +...+.+.+++.+++.+..+
T Consensus 338 ~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 338 DNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred hhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888 88888888888777766554
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=328.01 Aligned_cols=432 Identities=30% Similarity=0.475 Sum_probs=309.0
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCC-CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSD-SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLM 106 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~ 106 (515)
..++.+.+++|...++...+.......+..++. .+.+.++.+.++..+...+|..+|+++.|+++||+|||+.++++.+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~ 84 (451)
T PF00083_consen 5 ASLGGFLFGYDLGLIGSFASLLGFLQFFGWSSSESSCEKSSLLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISAL 84 (451)
T ss_pred eHHHHHHHHHHHHHHhhHHhhhhhhhccccccccccccchHHHHHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 345668889999888888777664332222221 1122256788999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcC---CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 107 MMVICSLASGLSF---GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 107 ~~~i~~~~~~~~~---~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
+..+++++.++++ + ++.+.++|+++|++.|+..+....++.|..|+++|++..++.+.+..+|.+++..++
T Consensus 85 ~~~i~~~~~~~~~~~~~------~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~ 158 (451)
T PF00083_consen 85 LMIIGSILIAFAPSYNN------FWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIG 158 (451)
T ss_pred ccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999 7 799999999999999999999999999999999999999999999999999888887
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHh
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQV 263 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
..+... ..+.+||+.+.+.++++++.++..+++||||+|+ ..+++.+|+.+.+++..+.
T Consensus 159 ~~~~~~--------------------~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL-~~~~~~~~A~~~l~~~~~~ 217 (451)
T PF00083_consen 159 YIVSYY--------------------SDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWL-LSKGRDEEAEKVLRKLRGK 217 (451)
T ss_pred cccccc--------------------ccccccccccccccccccccccccccccccccee-ccccccccccccccccccc
Confidence 655211 1235699999999999888777778999999998 4444555666666664333
Q ss_pred hhhHhhh-hHHHhh------cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhH
Q 010194 264 ELEAEQE-KVEQEK------GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAI 336 (515)
Q Consensus 264 ~~~~~~~-~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (515)
+.++++. +..++. +...++.++.+..++. ......+..+......+....+.+.++++.+.++...
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~----- 290 (451)
T PF00083_consen 218 EIEDEEIEEIKAEKKESQESKASWRDLFRNKKYRKR--LLIALLLQFFQQFSGINFIFYYSPSIFENAGISNSFL----- 290 (451)
T ss_pred ccccccccccccccccccccceeeeecccccccccc--ccccccccccccccccccccccccccccccccccccc-----
Confidence 2211111 111111 1223445554332221 2222222222222333445556666766666555410
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCC--chHHHHHHHHHHHHH
Q 010194 337 EEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPD--HRIGFVVLYSLTFFF 414 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 414 (515)
......+..+++.+++.++.||+|||+.++.+..+++++.+.++.........+ .....+....+....
T Consensus 291 ---------~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~ 361 (451)
T PF00083_consen 291 ---------ATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAF 361 (451)
T ss_pred ---------cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeecccc
Confidence 233344556666777789999999999999998888888777751111111111 122333334444445
Q ss_pred hhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 415 SNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
...+..+..+.+..|.+|++.|+++.|+...++++++++++.+.+.+.+..+....+.+.+++++++.++.+ ++||||+
T Consensus 362 ~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g 441 (451)
T PF00083_consen 362 FSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKG 441 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCC
Confidence 555677888899999999999999999999999999999999999998877745666677777676666665 8999999
Q ss_pred CChhhhhhh
Q 010194 494 KSLEEMSGE 502 (515)
Q Consensus 494 ~~~~~~~~~ 502 (515)
++.+|.++.
T Consensus 442 ~~l~ei~~~ 450 (451)
T PF00083_consen 442 KTLEEIQEM 450 (451)
T ss_pred CCHHHHHhh
Confidence 999998764
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=268.94 Aligned_cols=381 Identities=10% Similarity=-0.005 Sum_probs=264.9
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 010194 33 FTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICS 112 (515)
Q Consensus 33 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~ 112 (515)
+...+......+.+|.+.+++ +.+..+.|++.+.+.++..+++++.|+++||+|||+++..+..+.+++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~ 96 (417)
T PRK10489 27 FISIFGLGLLGVAVPVQIQMM----------TGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGF 96 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHH
Confidence 334445566678888888888 8899999999999999999999999999999999999998888887776
Q ss_pred HHhhh-----cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 113 LASGL-----SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 113 ~~~~~-----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
+..+. .++ ++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+|+.+++.+.
T Consensus 97 ~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~ 170 (417)
T PRK10489 97 IGLALNAFLPEPS------LLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLI 170 (417)
T ss_pred HHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHH
Confidence 65542 334 7889999999999988888888999999999999999999999999999999999999886
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhH
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEA 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+. .+|++.|++.++..++..+..+.+||+++.. +++ ++..+..
T Consensus 171 ~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~--~~~~~~~---------- 213 (417)
T PRK10489 171 AA-----------------------GGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR--EHPLRSL---------- 213 (417)
T ss_pred HH-----------------------HhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc--ccchHHH----------
Confidence 43 3499999887777666666666777765421 000 0000000
Q ss_pred hhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHH
Q 010194 268 EQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQ 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
.+..+..++++.. +......+ +. ........+.|.+.++ .|.++...+ ..
T Consensus 214 ---------~~~~~~~~~~~~~----~~~~~~~~---~~-~~~~~~~~~~p~~~~~~~g~~~~~~g------------~~ 264 (417)
T PRK10489 214 ---------LAGFRFLLASPVV----GGIALLGG---LL-TMASAVRVLYPALADEVWQMGAAQIG------------LL 264 (417)
T ss_pred ---------HHHHHHHHcChHH----HHHHHHHH---HH-HHHHhHHHhhHHHHHhccCCChhHhH------------HH
Confidence 0000111111111 11111111 11 1123344566777766 555443322 24
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccc
Q 010194 347 TLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVV 426 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (515)
.....++.+++.++.+++.||.++++.+..+..+..++.+++.... +........+..+.......+...++
T Consensus 265 ~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~ 336 (417)
T PRK10489 265 YAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMP--------MWILAVLCLALFGYLSAISSLLQYTL 336 (417)
T ss_pred HHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccc--------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556677888899999999997777777777666666655543321 22222222222222222223455678
Q ss_pred ccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH-HhccccCCCChhhhhhhh
Q 010194 427 PAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFT-FLVPESKGKSLEEMSGEA 503 (515)
Q Consensus 427 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 503 (515)
+.|..|++.||+++|+.+...++|..++|.+.|.+.+..|+...+...+++.++..++. ..+++.|+++.+|.+++.
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 337 LQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 89999999999999999999999999999999999999998888877776655544444 467888877766655543
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=276.54 Aligned_cols=413 Identities=13% Similarity=0.095 Sum_probs=277.0
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhcc------------CCCCCCCCCchhHHHHHHHHHHHHHHH
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYK------------EGSDSPGTLPDNVASAVNGVALCGTLA 83 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~------------~~~~~~~~~s~~~~g~~~s~~~l~~~i 83 (515)
...+.+|.+..+++++....+.|+..++...+.+.++-..+ +....+.+++..+.|++.+.+.+++.+
T Consensus 12 ~~~~~r~~i~~~~~~~~~~~y~dr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~ 91 (465)
T TIGR00894 12 YFCSFRLFLSFLLHICNVIIIAQRICLSLTMVAMVNKENSTDLACLSAENELDNIKNPNFKWSGALQGLILSSHFYGQII 91 (465)
T ss_pred cccCcHHHHHHHHHHHHHHHHHHHhhheEEEEEcccCCCCCCccccccccccccccCCCCCCCHHHhhHHHHHHHHHHHH
Confidence 34567788888999999999999999999988886522100 001114589999999999999999999
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhc--CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccc
Q 010194 84 GQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLS--FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTR 161 (515)
Q Consensus 84 ~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r 161 (515)
++++.|+++||+|||+++..+.++++++.+++.++ .+ ++.+++.|+++|++.+...+....++.||+|+++|
T Consensus 92 ~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r 165 (465)
T TIGR00894 92 IQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGG------IALVVFCRVIQGLAQGSVSPATHKIIVKWAPPKER 165 (465)
T ss_pred HHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcC------chHHHHHHHHHHHhcccchhhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999998887554 44 67899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCC-chHHHHHHHhHHHHHHHHH-HHHhcCCc
Q 010194 162 GAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEAD-YIWRIILMFGAIPALLTYY-WRMKMPET 239 (515)
Q Consensus 162 ~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 239 (515)
++++++...+..+|.++++++++.+. +. .+||+.|++.++.+++..+ ...+.+|+
T Consensus 166 ~~~~~~~~~~~~~g~~i~~~l~~~l~-----------------------~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~ 222 (465)
T TIGR00894 166 SRLLGMSTSGFQLGTFIFLPISGWLC-----------------------ESWGGWPMIFYVFGIVGCAWSLLWFVFPADD 222 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccCCCCeehhhhhHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999885 33 3699999998777766544 44556677
Q ss_pred hhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhH
Q 010194 240 ARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKD 319 (515)
Q Consensus 240 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (515)
|+.. ++.++ ++.+..++ .. ++ + +++.+.+..++....++ .++...+..++....++....+.|.
T Consensus 223 p~~~--~~~~~-~~~~~i~~----~~----~~-~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~lp~ 286 (465)
T TIGR00894 223 PSIH--PCISK-FEKKYINS----SL----QG-Q-KGSTRQSLPIKAIPKSL---PVWAIWFAIFGHFWLYTILPTYLPT 286 (465)
T ss_pred cccC--CCCCH-HHHHHHHh----hc----cc-c-cCCCCCCCCHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6531 11111 11111110 00 00 0 00001111122222222 3455556666666677777888898
Q ss_pred HHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH--------HHHHHHHHHHHHHHHh
Q 010194 320 IFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ--------LMGFFFMTVFMFALAI 390 (515)
Q Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~--------~~~~~~~~~~~~~~~~ 390 (515)
++++ .|++....+ .......++.+++.+++|+++||+++|+.. ..+......+..++..
T Consensus 287 ~l~~~~g~s~~~~g------------~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (465)
T TIGR00894 287 FISWVLRVSGKENG------------LLSSLPYLFAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYAL 354 (465)
T ss_pred HHHHHhCcChHHhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865 455443322 244555677788889999999997654211 1111111111111111
Q ss_pred hhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc---Cc
Q 010194 391 PYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS---GV 467 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~---g~ 467 (515)
.. . .......+....+.. ....+..+..+....|..| +.+|.++|+.+..+.++++++|.+.|.+.+.. +|
T Consensus 355 ~~--~--~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~-~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~ 428 (465)
T TIGR00894 355 PY--L--SAAFYLTIIILTLAN-AVSSGPLAGVLINSLDLAP-RFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVW 428 (465)
T ss_pred HH--c--CCchHHHHHHHHHHH-HHhhhhhhhhhhchhhcCh-hHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHH
Confidence 11 0 111222222222222 2222223334455567776 58999999999999999999999999988743 37
Q ss_pred hHHHHHHHHHHHHHHHHHHhcccc
Q 010194 468 KKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
...|.+.+++.+++.++.....+.
T Consensus 429 ~~~f~~~~~~~~i~~i~~~~~~~~ 452 (465)
T TIGR00894 429 LIVFLIMAFVNILCVIFYLIFGSA 452 (465)
T ss_pred HHHHHHHHHHHHHHHHHeeeeecc
Confidence 788888888888877666554443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=278.42 Aligned_cols=400 Identities=12% Similarity=0.056 Sum_probs=265.3
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
+...++|.++..+++.......+...++...|.+.+++ |.+.++.+++.+.+.++..++.++.|+++||+
T Consensus 12 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----------g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~ 81 (455)
T TIGR00892 12 PDGGWGWVVLGATFVSIGFSYAFPKAVTVFFKELQQIF----------QATYSETAWISSIMLAVLYAGGPISSILVNRF 81 (455)
T ss_pred CCCCcchHHHHHHHHHHHHHHhhhcchhhhHHHHHHHh----------CcchhHHHHHHHHHHHHHHHhhHHHHHHHHHc
Confidence 34456788877777776666666677888899999999 99999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHH-HHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCF-FRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF 174 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 174 (515)
|||++++.+.++.++++++++++++ ++.+++ .|+++|++.+...+...+++.++++ ++|+++.++.+.+..+
T Consensus 82 g~r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~ 154 (455)
T TIGR00892 82 GCRPVVIAGGLLASLGMILASFSSN------VIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPV 154 (455)
T ss_pred CchHHHHhhHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccH
Confidence 9999999999999999999999988 677654 5799999998877788888999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHH
Q 010194 175 GILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAA 254 (515)
Q Consensus 175 G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~ 254 (515)
|..++|++++.+.+ ..|||+.|++.++..++..+..+++.+.++. . ++.+++..
T Consensus 155 g~~~~~~l~~~l~~-----------------------~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~--~-~~~~~~~~ 208 (455)
T TIGR00892 155 FLSTLAPLNQYLFE-----------------------SFGWRGSFLILGGLLLHCCVCGALMRPVGPS--Q-RVSKSKSK 208 (455)
T ss_pred HHHHHHHHHHHHHH-----------------------HhChHHHHHHHHHHHHHHHHHHHHhCCCCcc--c-cccccccc
Confidence 99999999988864 3459999999877766554444333322211 0 00000000
Q ss_pred HHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccch
Q 010194 255 ADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMN 334 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
+... +....++.+. + ....+..+....+..++ +.++......+.....++....+.+.+.++.++++...+
T Consensus 209 ~~~~---~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g-- 279 (455)
T TIGR00892 209 EGLP---PDGSTKKLSK-K-STAEKINRFLDFSLFTH--RGFLVYLSGNVIMFLGFFAPIIFLVPYAKDKGVDEYEAA-- 279 (455)
T ss_pred ccCC---CCCccccccc-c-chhhhhhhhcchHHhcC--chHHHHHHHHHHHHHHccchHHHHHHHHHHcCCCHHHHH--
Confidence 0000 0000000000 0 00000001000011111 122333333344444555666677777777666544322
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh--chhhHHHHHH--HHHHHHHHHHHhhhhcccCCCchHHHHHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI--GRFAIQLMGF--FFMTVFMFALAIPYHHWTLPDHRIGFVVLYSL 410 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (515)
.......++.+++.++.+++.||. ++|+...... .+.+++.++.... .....+.+..+
T Consensus 280 ----------~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~~~i~~~ 341 (455)
T TIGR00892 280 ----------FLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALA--------GDYTGLVIYCI 341 (455)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHh--------chHHHHHHHHH
Confidence 245556677788888999999973 3343333322 2222222222211 12223333333
Q ss_pred HHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc-CchHHHHHHHHHHHHHHHHH
Q 010194 411 TFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS-GVKKALLILGGANFLGMLFT 485 (515)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~-g~~~~~~~~~~~~~~~~~~~ 485 (515)
..++......+...+++.|.+|++++++++|+++...++|.+++|.+.|.+.|.. +|+..|++.+++.+++.+..
T Consensus 342 ~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~~~ 417 (455)
T TIGR00892 342 FFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGLFL 417 (455)
T ss_pred HHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHHHH
Confidence 4444444445666788889999999999999999999999999999999999877 48888888887777665543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=272.61 Aligned_cols=380 Identities=16% Similarity=0.109 Sum_probs=268.7
Q ss_pred hHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 010194 20 YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKR 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 99 (515)
++|.++..++++.++...|.++++..+|.+.+++ |.+.++.+|+.+.+.++..++.+++|+++||+|||+
T Consensus 3 ~~~~~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l----------~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~ 72 (495)
T PRK14995 3 RQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTL----------GASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKR 72 (495)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 3577888999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcc-ccccchhHHHHHHHHHHHHHHH
Q 010194 100 VYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGFGILS 178 (515)
Q Consensus 100 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~ 178 (515)
+++.+.+++.+++++++++++ ++.++++|+++|++.+...+.....+.+++ |+++|+++++++.....+|..+
T Consensus 73 ~l~~~~~~~~~~~~~~~~a~~------~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~ 146 (495)
T PRK14995 73 LLMLGGTLFGLASLAAAFSPT------ASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF 146 (495)
T ss_pred HHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 899999999999999998888888887776 6789999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHHHHHHHH
Q 010194 179 GGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAKQAAADM 257 (515)
Q Consensus 179 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 257 (515)
||.+++.+. +..+||+.|++....+++. ++..+++||+|+.. .++.+........
T Consensus 147 gp~lgg~l~-----------------------~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~-~~~~d~~g~~~~~ 202 (495)
T PRK14995 147 GPLVGGILL-----------------------EHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR-DQPLNLGHALMLI 202 (495)
T ss_pred HHHHHHHhh-----------------------ccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCCChHhHHHHH
Confidence 999999995 4456999999976666554 34456678765421 0111111100000
Q ss_pred HH----HHHhh-hhHhh--------------------hhHHHhhcCC--cchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 010194 258 SK----VLQVE-LEAEQ--------------------EKVEQEKGKN--DFGLFSAKFVRRHGLHLIGTTVTWFLLDVAY 310 (515)
Q Consensus 258 ~~----~~~~~-~~~~~--------------------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
.. ....+ ..... ...+.+.+.+ ..+.++++ .+.......+......
T Consensus 203 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~-------~~~~~~~~~~~~~~~~ 275 (495)
T PRK14995 203 VAILLLVYSAKTALKGFLSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHR-------IILSGVVMAMTAMITL 275 (495)
T ss_pred HHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCc-------ccHHHHHHHHHHHHHH
Confidence 00 00000 00000 0000011111 12222222 1222223333333445
Q ss_pred HHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 010194 311 YSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALA 389 (515)
Q Consensus 311 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 389 (515)
+....+.|.+++. .|+++.+. .....+..++..++.++.|++.||+|+|+.+..+..+..++.+++.
T Consensus 276 ~~~~~~~~~~lq~v~g~s~~~a------------g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~ 343 (495)
T PRK14995 276 VGFELLMAQELQFVHGLSPLEA------------GMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA 343 (495)
T ss_pred HHHHHHHHHHHHHHcCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 5566677777765 46655442 2266667778888999999999999999988888777766665554
Q ss_pred hhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh
Q 010194 390 IPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~ 463 (515)
... ...+.+.... ..+..++......+.....+.+..|+++++.+.++.++..++|+.+|+.+.+.+.+
T Consensus 344 ~~~----~~~~~~~~~~-~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~ 412 (495)
T PRK14995 344 MTD----FSTQQWQAWG-LMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLS 412 (495)
T ss_pred Hhc----CCCchHHHHH-HHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 1112222222 22222222222334455666788999999999999999999999999999998875
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=258.18 Aligned_cols=369 Identities=13% Similarity=0.128 Sum_probs=255.8
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRK 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr 98 (515)
+..|+.+..+.++.+..........+.+|.+.+++ |.++++.++..+.+.++..+++++.|+++||+|||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr 85 (394)
T PRK10213 16 RPNWSAVFSVAFCVACLIIVEFLPVSLLTPMAQDL----------GISEGVAGQSVTVTAFVAMFASLFITQTIQATDRR 85 (394)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence 34566666666665555556566667889999999 99999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHH
Q 010194 99 RVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILS 178 (515)
Q Consensus 99 ~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 178 (515)
+++..+.++.+++.++++++++ ++.+++.|+++|++.+...+...+++.|++|+++|+++.++...+.++|..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~i 159 (394)
T PRK10213 86 YVVILFAVLLTLSCLLVSFANS------FSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVI 159 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHCh------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCchhhHHHHhccHHHHHHHH
Q 010194 179 GGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETARYTALVAKNAKQAAADM 257 (515)
Q Consensus 179 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~ 257 (515)
+|++++.+. +..+||+.|++.++.+++..+. ....||+|++. ++. +
T Consensus 160 g~~l~~~l~-----------------------~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~~---~~~-~------ 206 (394)
T PRK10213 160 AAPLGSFLG-----------------------ELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGEP---SHQ-K------ 206 (394)
T ss_pred HHHHHHHHH-----------------------hhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCccc---ccc-h------
Confidence 999999985 3456999999977666554433 34467754320 000 0
Q ss_pred HHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh-hhHHHhHhcccCCcccchhH
Q 010194 258 SKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLF-QKDIFTAIGWIPKAKTMNAI 336 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 336 (515)
++.++.++++. ++......+......+....+ .|.+.++.|+++...+
T Consensus 207 --------------------~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g---- 255 (394)
T PRK10213 207 --------------------QNTFRLLQRPG-------VMAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFGVDGLT---- 255 (394)
T ss_pred --------------------hHHHHHhcCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHH----
Confidence 00111122111 121212222222233333334 4666666676654322
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhh
Q 010194 337 EEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSN 416 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (515)
.......++.+++.++.+++.||.+ |+.+..+..+..++.+++.... ...+ .+....+..++..
T Consensus 256 --------~~~~~~~~~~iig~~~~~~l~~r~~-~~~l~~~~~~~~~~~~~l~~~~------~~~~-~~~~~~~l~G~~~ 319 (394)
T PRK10213 256 --------LVLLSFGIASFVGTSLSSFILKRSV-KLALAGAPLVLAVSALVLTLWG------SDKI-VATGVAIIWGLTF 319 (394)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHh------hhHH-HHHHHHHHHHHHH
Confidence 1455566778888899999999954 4443433333333322222211 1122 2222333333333
Q ss_pred cCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 010194 417 FGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLF 484 (515)
Q Consensus 417 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 484 (515)
....+...+.+.+..| +.+++..++.....++|..+|+.+.|.+.|..|+...+...+++.++..+.
T Consensus 320 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 320 ALVPVGWSTWITRSLA-DQAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HhhhHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 3334545556677777 556677788888889999999999999999999888887776665554443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=267.55 Aligned_cols=410 Identities=13% Similarity=0.140 Sum_probs=267.0
Q ss_pred hHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 010194 20 YHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKR 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 99 (515)
.++..+..+.+.+...+.++..+....|.+. +. |.+.++.+++.+++.++..+++++.|+++||+|||+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~----------g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~ 92 (438)
T TIGR00712 24 LRWQVFLGIFFGYAAYYLVRKNFALAMPYLV-EQ----------GFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRV 92 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHhhhHHHH-Hc----------CCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCce
Confidence 3566667777777888888877787888776 46 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 100 VYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 100 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
++..+.++.+++.++.++.++. ..+++.+++.|++.|++.+...+.....+.|++|+++|++++++.+.+.++|..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~ 170 (438)
T TIGR00712 93 FLPAGLILSAAVMLLMGFVPWA--TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIP 170 (438)
T ss_pred ehHHHHHHHHHHHHHHhccccc--cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHH
Confidence 9999999999998887765321 01167888999999999999889899999999999999999999999999999998
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAADMS 258 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~ 258 (515)
+.+.+.... ...+||..|++.++..++ .++..+++||+|+.. ..++.++..+
T Consensus 171 ~~l~~~~~~----------------------~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~--- 223 (438)
T TIGR00712 171 PLLVLLGMA----------------------WFNDWHAALYFPAICAIIVALFAFAMMRDTPQSC--GLPPIEEYRN--- 223 (438)
T ss_pred HHHHHHHHH----------------------HhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhc--CCCCchhccc---
Confidence 887665432 224599999997777665 445566778876541 1001000000
Q ss_pred HHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHH
Q 010194 259 KVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIE 337 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 337 (515)
+.+.+..+ +.+++.+.++.+.+...+. +.++...+..++.....+....+.|.++++ .|+++...
T Consensus 224 -----~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~------ 289 (438)
T TIGR00712 224 -----DYPDDYNE-KAEQELTAKEIFMQYVLPN--KLLWYIAIANVFVYLLRYGVLDWSPTYLKEVKHFALDKS------ 289 (438)
T ss_pred -----cccccccc-ccccccchHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHHhHHHHHHHccCCChhhH------
Confidence 00000000 0000111112221111111 123333344444445556677788888876 35554432
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhc
Q 010194 338 EVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (515)
........+..+++.++++++.||+++++....+.....+..+...... .. ...+.+... ...+..+....
T Consensus 290 ------~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~g~~~~ 360 (438)
T TIGR00712 290 ------SWAYFLYEYAGIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-MN-PAGNPLVDM-ICMIVIGFLIY 360 (438)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-hc-CCCchHHHH-HHHHHHHHHHc
Confidence 2245566677888999999999999654322223222221111111100 00 001112111 11122222222
Q ss_pred CccccccccccccCchhhhhhhhHHHHHHhhhhH-HHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 418 GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGA-IVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~-~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
+..........|.+|++.|++++|+.+...++++ +++|.+.|.+.|..||..++.+..++.+++.+..+ +.+|.|
T Consensus 361 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 361 GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred cHHHHHHHHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 2212222456799999999999999999988875 68999999999999999999888887777777666 555544
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=242.69 Aligned_cols=393 Identities=15% Similarity=0.215 Sum_probs=300.4
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
..++.+.+.+.+..+......+.+.+++++.+.+.+++ ++|+.|.+++.++..+..++..++.|.+.||+
T Consensus 7 ~~k~~~~~~L~~S~~af~v~F~VW~l~s~l~~~i~~~~----------~LS~~q~~ll~aiPil~GallRl~~g~l~drf 76 (417)
T COG2223 7 RGKRIARRNLWLSTLAFDVGFMVWTLFSPLGVFIKSDF----------GLSEGQKGLLVAIPILVGALLRLPYGFLTDRF 76 (417)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc----------CCCHHHHHHHHHHHHHHhHHHHHHHHhhhccc
Confidence 34455667778888888888888999999999999999 99999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 175 (515)
|.|++..++.++..+.++..+++.++++ ++++++++++.|++ |..+.+...++++|+|++++|.++|++. ..++|
T Consensus 77 GgR~~~~~s~~l~~IP~~~~~~a~~~~~---~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G 151 (417)
T COG2223 77 GGRKWTILSMLLLLIPCLGLAFAVTYPS---TWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLG 151 (417)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHccCCc---hHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-ccccc
Confidence 9999999999999999999999987422 46999999999997 5668999999999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHH
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAA 254 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~ 254 (515)
..+...++..+....+. ..||....+..+..++ .+..++...|.|+. ..+.++.+.
T Consensus 152 ~av~q~~~P~v~~~~g~--------------------~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~--r~~~~~~~~- 208 (417)
T COG2223 152 VAVAQLVAPLVAVAFGF--------------------LAWRNVAGIYVVALAIAAVLAWLGMNDVPEH--RASVKPQLP- 208 (417)
T ss_pred HHHHHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHHHHHHHHHHHHhCCChhh--hccccccch-
Confidence 99999999888754331 0299988886666665 45556667777653 111110000
Q ss_pred HHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccc
Q 010194 255 ADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTM 333 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 333 (515)
..++....++ ..|.+.+.++.....+.+...+.|.++++ ++.++...+
T Consensus 209 ---------------------------~~~~~v~~~~---~~W~lsllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag- 257 (417)
T COG2223 209 ---------------------------AQLKAVFSNK---DTWLLSLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAG- 257 (417)
T ss_pred ---------------------------hHHHHHhcCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHH-
Confidence 1111222122 34566666666666777788888888876 555554422
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHH
Q 010194 334 NAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFF 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (515)
...........+.++++|+++||+|.+|.+...+..++++..++...........+.......+.....
T Consensus 258 -----------~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~l~~ 326 (417)
T COG2223 258 -----------LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGHGGSFVVFVAVFLALFV 326 (417)
T ss_pred -----------HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHccccccccCcchHHHHHHHHHHHH
Confidence 255555666677899999999999999999999999998888877654222111223333443444444
Q ss_pred HhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHhccc
Q 010194 414 FSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
+.+.+ +...+.++..++| ++.|.+.|+...++.+|++.-|...+...+..| +...|+++..+.+++.+..+....
T Consensus 327 ~~G~G-nGsvfk~Ip~if~-~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~ 402 (417)
T COG2223 327 FAGLG-NGSVFKMIPVIFP-KETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYA 402 (417)
T ss_pred HhccC-cchheeechHHHH-hhhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 4456677888887 578999999999999999999999999999888 888999999999988887774433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-32 Score=261.78 Aligned_cols=367 Identities=15% Similarity=0.068 Sum_probs=251.3
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
+..+.++.+..........+.+|. +.+++ |.|.++.|++.+++.+++.++++++|+++||+||||+++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~p~l~~~l~~~l----------g~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~ 86 (392)
T PRK12382 17 LFRIAFAVFLTYMTVGLPLPVIPLFVHHDL----------GFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQ 86 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHhc----------CCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHH
Confidence 344444555556666677777775 57888 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh---hcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASG---LSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180 (515)
Q Consensus 104 ~~~~~~i~~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~ 180 (515)
+.++..++.+... ..+.. ...+++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~ 165 (392)
T PRK12382 87 GMLACGLAGLAYLLAAILPVS-APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGA 165 (392)
T ss_pred HHHHHHHHHHHHHhhhccccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHH
Confidence 9888777655332 22110 0112788999999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHH
Q 010194 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKV 260 (515)
Q Consensus 181 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 260 (515)
++++.+. +..|||+.+.+..+..++........||.++. +++
T Consensus 166 ~~~~~l~-----------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----------- 207 (392)
T PRK12382 166 PLGLLLH-----------------------SHFGFAALALTTMVLPLLAWAFNGTVRKVPAH----AGE----------- 207 (392)
T ss_pred HHHHHHH-----------------------hccChHHHHHHHHHHHHHHHHHHHhccCCCCC----ccc-----------
Confidence 9999885 34569988776555443333322223332211 000
Q ss_pred HHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHH
Q 010194 261 LQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVY 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
+.+.++..+.. .+. .. ..............+.+.++++.++...
T Consensus 208 ----------------~~~~~~~~~~~-~~~----~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~----------- 251 (392)
T PRK12382 208 ----------------RPSLWSVVGLI-WKP----GL----GLALQGVGFAVIGTFVSLYFASKGWAMA----------- 251 (392)
T ss_pred ----------------CchHHHHHHHH-HHh----HH----HHHHHHHHHhHHHHHHHHHHHhcCCchh-----------
Confidence 00001111100 000 01 1111122333344455556555444211
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcc
Q 010194 341 KIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (515)
+ .......++.+++.+..+++.||+|+|+.+..+..+..++.+++.... +.+.... ..+..+.......
T Consensus 252 --~-~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~l~g~~~~~~~ 320 (392)
T PRK12382 252 --G-FTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAP-------TAWVALA-GAALTGAGCSLIF 320 (392)
T ss_pred --H-HHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHcc-------cHHHHHH-HHHHHHHHHHhHH
Confidence 1 123345556677888999999999999998888777777665544322 1222222 2222223222234
Q ss_pred ccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
+...+...|..|+++|+++.|+.+...++|..++|.+.|.+.|..||+..|.+.+++.+++.+..++
T Consensus 321 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 387 (392)
T PRK12382 321 PALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL 387 (392)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence 5555667888999999999999999999999999999999999999999999998888877776653
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=264.69 Aligned_cols=383 Identities=13% Similarity=0.093 Sum_probs=258.2
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
.+..++++.+...++...+++..|.+.+++ |.+..+.+++.+.+.++..++.+++|+++||+|||++++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~ 80 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSL----------GESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFT 80 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 345666778888899999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
+..+.+++.++++++++ ++.+++.|+++|++.+...+...+++.|++|+++|+++.++.....++|..+||.++
T Consensus 81 ~~~~~~~~~~~~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~ 154 (471)
T PRK10504 81 AIVLFTLGSLFCALSGT------LNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALG 154 (471)
T ss_pred HHHHHHHHHHHHHHhCC------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999999999999888 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCchhhHHHHhccHHHHHHHHH----
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETARYTALVAKNAKQAAADMS---- 258 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~---- 258 (515)
+.+.+ ..+||+.|++.....++..+. ....|+.+.. ..+.+.........
T Consensus 155 g~l~~-----------------------~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~ 209 (471)
T PRK10504 155 GLLVE-----------------------YASWHWIFLINIPVGIIGAIATLMLMPNYTMQ--TRRFDLSGFLLLAVGMAT 209 (471)
T ss_pred HHHHh-----------------------hccHHHHHHHHHHHHHHHHHHHHHhCCCcccc--CCCCChHHHHHHHHHHHH
Confidence 99863 356999999977665554433 3444544321 00001000000000
Q ss_pred HHHHhhhhHh--------------------hhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010194 259 KVLQVELEAE--------------------QEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQK 318 (515)
Q Consensus 259 ~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (515)
.....+..+. ....++++ ..++.+..+.++++ .+.......++..........+.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~--~~~~~l~~~~~~~~~~~~~~~~~~ 285 (471)
T PRK10504 210 LTLALDGSKGLGLSPLAIAGLVAVGVVALLLYLLHARN--NNRALFSLKLFRTR--TFSLGLAGSFAGRIGSGMLPFMTP 285 (471)
T ss_pred HHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHHHhc--CCCCccCHHHhccc--chHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000000 00000011 11111111111111 112222222233334444555667
Q ss_pred HHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccC
Q 010194 319 DIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL 397 (515)
Q Consensus 319 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (515)
.+++. .|.++.. .........++.+++.++.+++.||+|||+.+..+..+..+...++.... .
T Consensus 286 ~~~~~~~g~~~~~------------~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~----~ 349 (471)
T PRK10504 286 VFLQIGLGFSPFH------------AGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA----L 349 (471)
T ss_pred HHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc----c
Confidence 77664 4544332 22245566666777778899999999999998888777776655554322 1
Q ss_pred CCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCch
Q 010194 398 PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVK 468 (515)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~ 468 (515)
...........+..+.......+.......+..|++.++.++|+.++...+|..+++.+.|.+.+..|+.
T Consensus 350 -~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~~ 419 (471)
T PRK10504 350 -LGWYYLLPFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQQ 419 (471)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1112212122222222222223445567778899999999999999999999999999999998876653
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=259.09 Aligned_cols=367 Identities=13% Similarity=0.117 Sum_probs=255.8
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
.+....+..+..+.......+.+|.+.+|+ |.+.++.|++.+.+.+++.++++++|+++||+|||+++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~ 73 (382)
T PRK10091 4 VILSLALGTFGLGMAEFGIMGVLTELAHDV----------GISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLF 73 (382)
T ss_pred hHHHHHHHHHHHHhhHHHHHhChHHHHHHc----------CCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHH
Confidence 344555667777888888889999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
+..+.+++.++++++++ ++.+++.|+++|++.+...+....++.|++|+++|++++++...+..+|..++++++
T Consensus 74 ~~~~~~~~~~l~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 147 (382)
T PRK10091 74 LVALCVIGNAMFTLSSS------YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLG 147 (382)
T ss_pred HHHHHHHHHHHHHHhCc------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHH
Confidence 99999999999999998 899999999999999988888889999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHH-HHHHhcCCchhhHHHHhccHHHHHHHHHHHHH
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTY-YWRMKMPETARYTALVAKNAKQAAADMSKVLQ 262 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
+.+. +..+||+.|++.++..++.. ...+++||.++. .+++.++
T Consensus 148 ~~l~-----------------------~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~---~~~~~~~---------- 191 (382)
T PRK10091 148 TYLS-----------------------QEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE---AKGGLRE---------- 191 (382)
T ss_pred HHHh-----------------------hhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc---cccCHHH----------
Confidence 8885 34569999999777665543 344567875421 0000000
Q ss_pred hhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHH
Q 010194 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYK 341 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 341 (515)
..+.++++. .+......+......+....+.+.++. ..|+++..
T Consensus 192 -----------------~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----------- 236 (382)
T PRK10091 192 -----------------QFHFLRSPA-------PWLIFAATMFGNAGVFAWFSYIKPYMMFISGFSETS----------- 236 (382)
T ss_pred -----------------HHHHhcChH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH-----------
Confidence 000111111 111111111211222222233333443 34555443
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccc
Q 010194 342 IARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNT 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (515)
.........++.+++.++.+++.||+++|+.+..+..+..++.+++.... +..+.......+.. ....+..+
T Consensus 237 -~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~-~g~~~~~~ 308 (382)
T PRK10091 237 -MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFG------GMKTASLIFAFICC-AGLFALSA 308 (382)
T ss_pred -HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHH-HHHHhhhH
Confidence 22256667778889999999999999999998888777776665443322 01122222222221 11111222
Q ss_pred -cccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHHHHHHh
Q 010194 422 -TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT-SGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 422 -~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
.......+..|++.++.+ ..+...++|.++||.+.|.+.|. .+|+..+.+.++++++.......
T Consensus 309 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (382)
T PRK10091 309 PLQILLLQNAKGGELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLL 374 (382)
T ss_pred HHHHHHHHhCCcchHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHH
Confidence 222333444555555554 34667889999999999999995 67988888887777766665553
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=248.73 Aligned_cols=392 Identities=15% Similarity=0.119 Sum_probs=274.5
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhh-hhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGR-IYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
+-.++.+.+..++.+........++++.+.+.+ ++ ++|.+|.+++.+++.+++.++.++.|++.||+|.
T Consensus 30 ~~a~r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~----------~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~ 99 (462)
T PRK15034 30 HIARRNLWISVSCLLLAFCVWMLFSAVTVNLNKIGF----------NFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGG 99 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345677888888888889999999999999876 78 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhc-----CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLS-----FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQ 172 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~-----~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~ 172 (515)
|+++.++.+++++.+++.+++ ++ ++.+++.|++.|++ +..++.....+++|+|+++||+++|+.....
T Consensus 100 R~v~~~~~ll~~i~~~~~~~a~~~~~~s------~~~lli~r~l~Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G 172 (462)
T PRK15034 100 RRWTVFSTAILIIPCVWLGIAVQNPNTP------FGIFIVIALLCGFA-GANFASSMGNISFFFPKAKQGSALGINGGLG 172 (462)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcccCCC------HHHHHHHHHHHHHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHH
Confidence 999999999999999999986 56 89999999999998 7788999999999999999999999998777
Q ss_pred HHHHHHHHHHHHHHH-----HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHH-hcCCchhhHHHH
Q 010194 173 GFGILSGGMVAIIVS-----AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRM-KMPETARYTALV 246 (515)
Q Consensus 173 ~~G~~~g~~l~~~l~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~ 246 (515)
++|..+++++...+. ...+..... ....+..+||.+.++.+++.++..++.+ +.+|.|+.
T Consensus 173 ~~G~~l~~~l~p~~i~~~l~~~~G~~~~~----------~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~~---- 238 (462)
T PRK15034 173 NLGVSVMQLVAPLVIFVPVFAFLGVNGVP----------QADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIASS---- 238 (462)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccccc----------ccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCcccc----
Confidence 788877776665543 222210000 0001356699998887776666554444 34443211
Q ss_pred hccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcc
Q 010194 247 AKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGW 326 (515)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (515)
+.+.++. .+.+|++ ..|...+.+++....+.+...+.|.+.++ .+
T Consensus 239 ~~~~~~~---------------------------~~vlk~~-------~~Wllslly~~tFG~fvg~s~~lp~~~~~-~~ 283 (462)
T PRK15034 239 RASIADQ---------------------------LPVLQRL-------HLWLLSLLYLATFGSFIGFSAGFAMLAKT-QF 283 (462)
T ss_pred ccCHHHH---------------------------HHHhCCC-------chhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hc
Confidence 0110100 0111211 23555555566656666677778877665 22
Q ss_pred cCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHH
Q 010194 327 IPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVV 406 (515)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (515)
... ..........+...+.++++|+++||+|+++++.++.+.+.++...+..... .....+.+....
T Consensus 284 ~~~------------~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp-~~~~~~~~~~~~ 350 (462)
T PRK15034 284 PDV------------NILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLP-GTGSGNFIAFYA 350 (462)
T ss_pred ChH------------HHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhc-cccccHHHHHHH
Confidence 110 0111223345667778889999999999999999888777766544333221 000111222333
Q ss_pred HHHHHHHHhhcCccccccccccccCch---------------------hhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc
Q 010194 407 LYSLTFFFSNFGPNTTTFVVPAEIFPA---------------------RLRSTCHGISAASGKAGAIVGAFGFLYLADTS 465 (515)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~p~---------------------~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~ 465 (515)
.+..+....+.+ +...+-++.+.+|+ ++.|.+.|+....+.+|+++.|.++|...+..
T Consensus 351 ~~~~l~~~~G~g-ngsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~ 429 (462)
T PRK15034 351 VFMGLFLTAGLG-SGSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMT 429 (462)
T ss_pred HHHHHHHHhccc-chHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHc
Confidence 333333333443 33455566677764 26789999999999999999999999988865
Q ss_pred C-chHHHHHHHHHHHHHHHHHHhccc
Q 010194 466 G-VKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 466 g-~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
| +...++.+.+..++|.++.+....
T Consensus 430 g~~~~~~~~~~~~~~~~~~~~w~~y~ 455 (462)
T PRK15034 430 GSPVGAMKVFLIFYIVCVLLTWLVYG 455 (462)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5 778899999999999888874433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-31 Score=254.94 Aligned_cols=378 Identities=14% Similarity=0.053 Sum_probs=257.2
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
+++.+.....+.+..+...++...+.+..|.+.+++ +.+..+.++..+.+.+++.+++++.|+++||+||
T Consensus 8 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~ 77 (406)
T PRK15402 8 GRQALLFPLCLVLFEFATYIANDMIQPGMLAVVEDF----------NAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGR 77 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhhHhcchHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 345566667777778888888888889999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL 177 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 177 (515)
|+++..+..+.+++.+++.++++ ++.+++.|+++|++.+...+...+.+.|++|+++|.+..++......+|..
T Consensus 78 r~~l~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (406)
T PRK15402 78 RPVMLAGVAFFILTCLAILLAQS------IEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPL 151 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988 899999999999999988889999999999999999999999888889999
Q ss_pred HHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHH
Q 010194 178 SGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAAD 256 (515)
Q Consensus 178 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~ 256 (515)
++|.+++.+.+ ..+||+.|++.++..++..+ ..+..||+++. .+++. + .++
T Consensus 152 ~g~~i~~~l~~-----------------------~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~-~~~ 203 (406)
T PRK15402 152 LGPLVGAALIH-----------------------VLPWRGMFVLFAALAALSFFGLWRAMPETAGR--VGEKL--S-LKE 203 (406)
T ss_pred HHHHHHHHHHH-----------------------ccCccHHHHHHHHHHHHHHHHHHHhCCCCCcc--ccccc--c-HHH
Confidence 99999988853 34599999987766665444 34557776532 10000 0 000
Q ss_pred HHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchh
Q 010194 257 MSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNA 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 335 (515)
. .++.++.++++. ++......+...........+.|.++.+ .++++.+
T Consensus 204 ~-------------------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~----- 252 (406)
T PRK15402 204 L-------------------GRDYKLVLKNRR-------FVAGALALGLVSLPLLAWIALSPVILISGEQLSSYE----- 252 (406)
T ss_pred H-------------------HHHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHH-----
Confidence 0 000011112211 2222222222222333333445655443 4554332
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHh
Q 010194 336 IEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFS 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (515)
.+. ......++.+++.++.+++.||+++|+.+..+..+..++..++...... .. ....+.....+..+..
T Consensus 253 ------~g~-~~~~~~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~-~~~~~~~~~~~~~g~g 322 (406)
T PRK15402 253 ------YGL-LQVPVFGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVI--SS-HAYLWLTAGLSLYAFG 322 (406)
T ss_pred ------HHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHc--cc-ccHHHHHHHHHHHHHH
Confidence 111 3334445677888899999999999999888877776666665543211 11 1122222222222222
Q ss_pred hcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHH
Q 010194 416 NFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLG 481 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~ 481 (515)
.....+......... +++++|++.++.+....++..+|+.+.+.+.+..+.........+..++.
T Consensus 323 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ 387 (406)
T PRK15402 323 IGLANAGLYRLTLFS-SDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW 387 (406)
T ss_pred HHHHhhhHHHHHhhh-ccccccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence 221223333333333 34889999999999999999999999999988777544333333333333
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-31 Score=252.01 Aligned_cols=362 Identities=14% Similarity=0.173 Sum_probs=253.3
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMT 104 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~ 104 (515)
+..+.++.+....+.....+.+|.+.+++ |.|..+.|++.+.+.++..+++++.|+++||+|||+++..+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~----------~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~ 77 (381)
T PRK03633 8 VLLLLCGLLLLTLAIAVLNTLVPLWLAQE----------HLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLA 77 (381)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45555777778888899999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 010194 105 LMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184 (515)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 184 (515)
.++.+++.++++++++ ++.++++|+++|++.+...+...+.+.+..++++|+++++++..+.++|..+|+.+++
T Consensus 78 ~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~ 151 (381)
T PRK03633 78 SLIFAAGCAGLGLMVG------FWSWLAWRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVS 151 (381)
T ss_pred HHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988 8999999999999999888888888889999999999999999999999999999998
Q ss_pred HHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhh
Q 010194 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVE 264 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
.+..... ....|+..+. ...+..+.....+|+++. +
T Consensus 152 ~l~~~~~-------------------~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-----~---------------- 187 (381)
T PRK03633 152 KVSTELM-------------------SVLPWVTGLV----LAAILPLLFTRILNQQAE-----N---------------- 187 (381)
T ss_pred ccccccc-------------------chHHHHHHHH----HHHHHHHHHhcccCCCCC-----C----------------
Confidence 8753211 1122332221 111111111112221000 0
Q ss_pred hhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHH
Q 010194 265 LEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIAR 344 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
++..+.++.++++.. +... ...+.....+.....+.|.+.++.|.++.. .+.
T Consensus 188 ----------~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~~~~~lp~~~~~~g~s~~~-----------~g~ 239 (381)
T PRK03633 188 ----------HDSTSIWPMLKLRQA----RLGV---NGCIISGIVLGSLYGLMPLYLNHQGMSDAS-----------IGF 239 (381)
T ss_pred ----------CCCCCHHHHHHhcch----HHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----------HHH
Confidence 000111122222211 1111 111111122333445677777765554332 122
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 345 AQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
......++.+++.+..+++.||+++|+.+..+..+..++.+.+. .. .. .... ....+.......|...
T Consensus 240 -~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~--------~~-~~~~-~~l~g~~~~~~~p~~~ 307 (381)
T PRK03633 240 -WMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML-SQ--------AA-MAPA-LFILGAAGFTLYPVAM 307 (381)
T ss_pred -HHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh-hh--------HH-HHHH-HHHHHHHHHhHHHHHH
Confidence 44556677788899999999999999988877777666554432 11 11 1111 1122222333457777
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+.+.|..|+++++...+..+...++|..++|.+.|.+.|..|++..|.+.+.+.++..+..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~ 369 (381)
T PRK03633 308 AWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLL 369 (381)
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 77889998888888888888889999999999999999999999988888777766554443
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-31 Score=252.63 Aligned_cols=352 Identities=11% Similarity=0.010 Sum_probs=249.8
Q ss_pred HHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 010194 29 GMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMM 108 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 108 (515)
..+.+...+......+.+|.+..++ +.+..+.+++.+++.++..++++++|+++||+|||+++..+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~ 74 (365)
T TIGR00900 5 FAAQLISLIGTAITQVALPLYVLAG----------TGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIR 74 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----------hccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHH
Confidence 3455666667777788889888888 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcC-----CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 109 VICSLASGLSF-----GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 109 ~i~~~~~~~~~-----~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
.++.++..+.. + ++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+.+..+|.++|+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~ 148 (365)
T TIGR00900 75 AVLVAVLPFVALLGGLN------IWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIG 148 (365)
T ss_pred HHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 88888888776 6 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhc--CCchhhHHHHhccHHHHHHHHHHHH
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKM--PETARYTALVAKNAKQAAADMSKVL 261 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~--~e~p~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+.+.+. .+||+.|++.++..++..+..+.+ ||+++. ++++.++ +..
T Consensus 149 ~~l~~~-----------------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~~~---- 196 (365)
T TIGR00900 149 GLMYAT-----------------------LGIKWAIWVDAVGFAISALLIVSVRIPELAAS---EIQALSN--AVL---- 196 (365)
T ss_pred HHHHHH-----------------------hhHHHHHHHHHHHHHHHHHHHHhcccccCCCc---cccccch--hHH----
Confidence 998643 459999998777666554444333 332211 0000000 000
Q ss_pred HhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh-hhhhHHHhH-hcccCCcccchhHHHH
Q 010194 262 QVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQN-LFQKDIFTA-IGWIPKAKTMNAIEEV 339 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~ 339 (515)
++..+..+..++++. ++......+.......... .+.|.+.++ .++++.+.
T Consensus 197 ------------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 249 (365)
T TIGR00900 197 ------------RDTREGIKFVLKNPL-------LRTLLLLALLFNLVFAPAIVALFPYVQSKYLGRGSTHY-------- 249 (365)
T ss_pred ------------HHHHhHHHHHHcCcH-------HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchHHH--------
Confidence 000001111122211 1112222222222333333 556666654 45443321
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCc
Q 010194 340 YKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (515)
........++.+++.++.+++.||++||+.+..+..+.+++...+.... .+.....+..+..++.....
T Consensus 250 ----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~ 318 (365)
T TIGR00900 250 ----GWVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLTP-------PNFPLFLVLWFAIGVGYGPI 318 (365)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhhc-------hhHHHHHHHHHHHHHHHHHH
Confidence 2245556677788888999999999999988877666666655554332 11222233333333333334
Q ss_pred cccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC
Q 010194 420 NTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG 466 (515)
Q Consensus 420 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g 466 (515)
.+...++..|..|++.|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus 319 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 319 NVPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677888999999999999999999999999999999999988654
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-31 Score=255.61 Aligned_cols=380 Identities=18% Similarity=0.234 Sum_probs=250.8
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHH-----HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 010194 32 FFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNG-----VALCGTLAGQLFFGWLGDKMGRKRVYGMTLM 106 (515)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s-----~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~ 106 (515)
.+.+++|+..++...+.+.++++. +.++++.+.+.+ ...++..+++++.|+++||+|||+++..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~ 73 (394)
T TIGR00883 2 NAVEWFDFYLYGFAAVLVFHTFFP--------PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLL 73 (394)
T ss_pred cchhHHHHHHHHHHHHHHHHHhcC--------CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHH
Confidence 356788999999999999888732 234445555443 3334445789999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCchh--HHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 010194 107 MMVICSLASGLSFGKEPKA--VMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184 (515)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~--~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~ 184 (515)
+..++.+++++++++.... ....+++.|+++|++.+...+...+++.|++|+++|++..++...+..+|.++++.++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~ 153 (394)
T TIGR00883 74 MMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVL 153 (394)
T ss_pred HHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998831100 01258999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhh
Q 010194 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVE 264 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
.+....+.. ..+..+||+.|++.++..++........||+|++...+++
T Consensus 154 ~~~~~~~~~---------------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------- 202 (394)
T TIGR00883 154 LLSYLLGDD---------------ALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQEK---------------- 202 (394)
T ss_pred HHHHhcCHH---------------HhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHhc----------------
Confidence 775432210 0135689999998777766666555667777643110000
Q ss_pred hhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHH
Q 010194 265 LEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIA 343 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 343 (515)
+++.+.+.++.++++. +.++......+......+....+.|.+.++ .+.++.. .
T Consensus 203 --------~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~ 257 (394)
T TIGR00883 203 --------HKKKRGPIRETLTKHR-----KPFLLGLGLVIATTTTFYLITTYLPTYLTQTLGLSANS------------A 257 (394)
T ss_pred --------cccccCCHHHHHHhch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhH------------H
Confidence 0001112222222211 123333334444445566666777877743 4544432 1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccc
Q 010194 344 RAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTT 423 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (515)
........+..+++.++.+++.||+|||+.+.....+..+.......... .. ..........+..++......+..
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~g~~~~~~~~~~ 333 (394)
T TIGR00883 258 LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMALL---DS-GSFTLFFFLVLGLALIGGMYTGPM 333 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHh---cC-CchHHHHHHHHHHHHHHHHHhhhH
Confidence 12445566677888889999999999999876554444333221111110 01 112222222233333332335567
Q ss_pred cccccccCchhhhhhhhHHHH-HHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHH
Q 010194 424 FVVPAEIFPARLRSTCHGISA-ASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANF 479 (515)
Q Consensus 424 ~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~ 479 (515)
.++..|.+|++.|+++.++.. ....+|..++|.+.|.+.|..| ++..++...++.+
T Consensus 334 ~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l 391 (394)
T TIGR00883 334 GSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL 391 (394)
T ss_pred HHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence 788899999999999999854 4556788899999999999888 6665555544433
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-30 Score=247.80 Aligned_cols=346 Identities=24% Similarity=0.350 Sum_probs=280.6
Q ss_pred HHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 010194 27 IAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLM 106 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~ 106 (515)
.+.+..+...++....++..|.+.+++ +.+..+.+++.+...++..+++++.|+++||+|||+.+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~ 72 (352)
T cd06174 3 LLFLGFFLSGLDRGLLSPALPLLAEDL----------GLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLL 72 (352)
T ss_pred HHHHHHHHHHHhhhhhHhhHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHH
Confidence 344566777888888899999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 107 MMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
+..++.+...+.++ ++.+++.|++.|++.+...+...+++.|++|+++|++.+++......+|..+++.+++.+
T Consensus 73 ~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 146 (352)
T cd06174 73 LFALGSLLLAFASS------LWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLL 146 (352)
T ss_pred HHHHHHHHHHHhcc------HHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 899999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhh
Q 010194 187 SAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELE 266 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
.+. .+||+.+++.++..++..+...+++ |
T Consensus 147 ~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------------------- 175 (352)
T cd06174 147 AES-----------------------LGWRWLFLILAILGLLLALLLLFLL--R-------------------------- 175 (352)
T ss_pred HHH-----------------------hhHHHHHHHHHHHHHHHHHHHHHHH--H--------------------------
Confidence 643 3499999997777666555443332 0
Q ss_pred HhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHh-cccCCcccchhHHHHHHHHHH
Q 010194 267 AEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAI-GWIPKAKTMNAIEEVYKIARA 345 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 345 (515)
.++......+...........+.+.+.++. ++++.+ ...
T Consensus 176 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~ 215 (352)
T cd06174 176 ----------------------------LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAE------------AGL 215 (352)
T ss_pred ----------------------------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHH------------HHH
Confidence 122333344444455566666777776664 443332 222
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFA-IQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
......++.+++.++.+++.||++||+ .+..+..+..++.+.+.... +...........+.......+...
T Consensus 216 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~ 287 (352)
T cd06174 216 LLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAP--------SLALLLVALLLLGFGLGFAFPALL 287 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHhccchhHH
Confidence 566677788889999999999999999 88888888888777665533 133333444444455555567888
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
++..|..|+++|++.+|+.+...+++..+++.+.+.+.|..+++..+.+.+++.+++.+..++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~ 350 (352)
T cd06174 288 TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLL 350 (352)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhee
Confidence 999999999999999999999999999999999999999999999999998888888776553
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-31 Score=264.37 Aligned_cols=377 Identities=15% Similarity=0.146 Sum_probs=264.9
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 010194 23 TAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYG 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~ 102 (515)
+++..++++.+...++....++..|.+.+++ |.+..+.+++.+.+.++..++.++.|+++||+|||++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~ 71 (485)
T TIGR00711 2 LLTIVLMLGTFMAVLDSTIVNVAIPTIAGDL----------GSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFL 71 (485)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHH
Confidence 3456677788889999999999999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 010194 103 MTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182 (515)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l 182 (515)
.+.++..+++++++++++ ++.+++.|+++|++.+...+...+++.|++|+++|+++.+++..+..+|..+|+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 145 (485)
T TIGR00711 72 ISTFAFTLGSLLCGVAPN------LELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL 145 (485)
T ss_pred HHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 999999999999999998 89999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHH----
Q 010194 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADM---- 257 (515)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~---- 257 (515)
++.+. +..+||+.|++.++.+++..+ ..+++||+++. .+ ++.+.....+
T Consensus 146 ~~~l~-----------------------~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~d~~g~~l~~~~ 199 (485)
T TIGR00711 146 GGWII-----------------------ENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--AS-ENFDFLGLLLLSVG 199 (485)
T ss_pred HhHhc-----------------------cCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--cc-CCCcHHHHHHHHHH
Confidence 99884 456799999997766665443 44556765432 11 1111100000
Q ss_pred ----HHHHHhhhhHh--hh------------------hHHHhhcCC--cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 010194 258 ----SKVLQVELEAE--QE------------------KVEQEKGKN--DFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYY 311 (515)
Q Consensus 258 ----~~~~~~~~~~~--~~------------------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (515)
........+.. .+ ..+.+++++ ..+.++++ .++......+.....++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~ 272 (485)
T TIGR00711 200 LGSLLYGLSEGPERGWFDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYR-------NFTIGCVYMSLLGLGLY 272 (485)
T ss_pred HHHHHHHHhhCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCC-------ChHHHHHHHHHHHHHHH
Confidence 00000000000 00 000011111 11122221 12222333444445566
Q ss_pred HHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh
Q 010194 312 SQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAI 390 (515)
Q Consensus 312 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 390 (515)
....+.|.++++ .|+++.+. ........++.+++.++.+++.||++||+.+..+..+.+++..++..
T Consensus 273 ~~~~~~p~~~~~~~g~s~~~~------------g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~ 340 (485)
T TIGR00711 273 GSFYLLPLYLQQVLGYTALQA------------GLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAF 340 (485)
T ss_pred HHHHHHHHHHHHhcCCCHHHH------------HHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhc
Confidence 666777888766 45554332 22556677788889999999999999999988888777777666542
Q ss_pred hhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc
Q 010194 391 PYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT 464 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~ 464 (515)
.. .+...........+..+++.....+.......+..|+++++++.|+.+...++|+.+++.+.+.+.++
T Consensus 341 ~~----~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~ 410 (485)
T TIGR00711 341 TF----TPDTPFLAIALPQFIRGFGMGCFFMPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN 410 (485)
T ss_pred cC----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11112222222222222222222233445556778999999999999999999999999999999874
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-32 Score=263.28 Aligned_cols=373 Identities=15% Similarity=0.164 Sum_probs=251.6
Q ss_pred HhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 010194 30 MGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMV 109 (515)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 109 (515)
++++..++++..++...|.+.+++ +.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 71 (379)
T TIGR00881 2 IGYAAYYLVRKNFALAMPYLVEEI----------GLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCA 71 (379)
T ss_pred chhhHHHHhHHhhhhhhHHHHHHh----------CCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHH
Confidence 356777889999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 010194 110 ICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG-MVAIIVSA 188 (515)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~-~l~~~l~~ 188 (515)
++.++++++++ ++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..+++ .++..+.
T Consensus 72 ~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~- 144 (379)
T TIGR00881 72 IVNLFFGFSTS------LWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIA- 144 (379)
T ss_pred HHHHHHHHhhh------HHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHH-
Confidence 99999999998 899999999999999999999999999999999999999999999999999999 4665553
Q ss_pred hhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhH
Q 010194 189 AFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEA 267 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
...+||+.|++.++..++ .++..++.||+|+.. +.++.++..+ ++ .
T Consensus 145 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~~--~ 191 (379)
T TIGR00881 145 ----------------------ELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSC--GLPPAEEMPN-------EE--P 191 (379)
T ss_pred ----------------------hcCCchhHHHHHHHHHHHHHHHHheeeCCCcccc--ccCccccCcc-------cc--c
Confidence 345699999987766555 444555677766431 1110000000 00 0
Q ss_pred hhhhHHHhhcCCcch-hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHH
Q 010194 268 EQEKVEQEKGKNDFG-LFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARA 345 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
+.++.+++++.+.++ ..+....+ +.++...+..+...........+.|.++++ .++++.+ ...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~------------~~~ 256 (379)
T TIGR00881 192 DGDAEKKEEELTKKQIFLQYVLLN---KVLWYISLGYVFVYVVRTGILDWSPLYLTQEKGFSKEK------------ASW 256 (379)
T ss_pred ccccccccccccchHHHHHHHHhc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH------------HHH
Confidence 000000001111111 11111111 123333344444444555556667777654 4554433 122
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++.+++.++.+++.||..+|+...............+.... . .+...........+..+....+..+....
T Consensus 257 ~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 333 (379)
T TIGR00881 257 AFTLYELGGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW--L-NPAANPLMDLICLFALGFLVYGPQMLIGV 333 (379)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh--c-CcchhHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55566677888999999999986433222222111111111111111 0 00111222222223333333333444556
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHH
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKA 470 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~ 470 (515)
+..|..|++.|+++.|+.+...++|..++|.+.|.+.|..||+..
T Consensus 334 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 378 (379)
T TIGR00881 334 IASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA 378 (379)
T ss_pred HHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence 788999999999999999999999999999999999999888754
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-30 Score=248.93 Aligned_cols=355 Identities=15% Similarity=0.159 Sum_probs=246.1
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTL 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~ 105 (515)
..+.+..+..........+..|.+.+++ |.++++.+++.+.+.++..++++++|+++||+|||+++..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~ 77 (385)
T TIGR00710 8 LLLGCLSILGPLGIDMYLPAFPEIAADL----------STPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGL 77 (385)
T ss_pred HHHHHHHHHHHHHHHHhcccHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence 3333334555667778888999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010194 106 MMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAII 185 (515)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 185 (515)
++.+++.+++.++++ ++.+++.|++.|++.+...+...+++.|++|+++|+++.++.+....+|..+++.+++.
T Consensus 78 ~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~ 151 (385)
T TIGR00710 78 FIFALSSLGLALSNN------IETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGY 151 (385)
T ss_pred HHHHHHHHHHHHHcc------HHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 89999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhh
Q 010194 186 VSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVE 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
+.+ ..+||+.|++.++..++..+ ..+..||+++. .++++.++..
T Consensus 152 l~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~---------- 196 (385)
T TIGR00710 152 ILV-----------------------WLSWHAIFAFLSLAGILLSALIFFILPETLPY--EARIQISTYF---------- 196 (385)
T ss_pred HHH-----------------------HcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--cccCCHHHHH----------
Confidence 853 34599999987666655433 44556776543 1110000000
Q ss_pred hhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHH
Q 010194 265 LEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIA 343 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 343 (515)
+..++.++++. ++...+.........+....+.|.+++ ..++++...
T Consensus 197 -------------~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~------------ 244 (385)
T TIGR00710 197 -------------ETFLLLLKSKM-------FWGYALIYGASFGGFFAFFSGAPFVYIDIMGVSPSVF------------ 244 (385)
T ss_pred -------------HHHHHHHcCch-------hHHHHHHHHHHHHHHHHHHHcChHHHHHHcCCCHHHH------------
Confidence 00111112111 111222222223334444555666655 345544331
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccc
Q 010194 344 RAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTT 423 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (515)
........++.+++.++.+++.||+++|+.+..+..+..++.+++....... ..............+.......+..
T Consensus 245 g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ 321 (385)
T TIGR00710 245 GLLFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG---LGSWAMIIGPMMFVGIGNSMISSIA 321 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 1245556677888999999999999999988887777666665554432110 0122222222222323233334555
Q ss_pred cccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCc
Q 010194 424 FVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 424 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~ 467 (515)
.....|..| +.++++.++.+...+.++.+.+.+.+.+.+..++
T Consensus 322 ~~~~~~~~~-~~~g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~ 364 (385)
T TIGR00710 322 MAYALEDFP-HVAGTASALFGTLRLVLGAIVGYLVSLIHGNTAW 364 (385)
T ss_pred HHHHhccCc-ccchHHHHHHHHHHHHHHHHHHHHHHhccccChH
Confidence 667778777 6789999999999887666666666755443333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-30 Score=250.92 Aligned_cols=374 Identities=13% Similarity=0.125 Sum_probs=256.6
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhH-----HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNV-----ASAVNGVALCGTLAGQLFFGWLGDKMGRKRV 100 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~-----~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~ 100 (515)
...+++.+..........+.+|.+.+++ |.+..+ .|++.+++.++..++++++|+++||+|||++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~ 86 (408)
T PRK09874 17 TVAWLGCFLTGAAFSLVMPFLPLYVEQL----------GVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIM 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHh----------CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHH
Confidence 3445566666777777888999998888 776544 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHH
Q 010194 101 YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGG 180 (515)
Q Consensus 101 l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~ 180 (515)
+..+.++.+++.+++.+.++ ++.+++.|++.|++.+ ..+....++.|++|+++|+++.++...+..+|..+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 159 (408)
T PRK09874 87 LLRSALGMGIVMVLMGLAQN------IWQFLILRALLGLLGG-FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGP 159 (408)
T ss_pred HHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888 8999999999999855 4677888999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHH
Q 010194 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSK 259 (515)
Q Consensus 181 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 259 (515)
.+++.+.+. .+||+.|++.++..++..+ ..+++||+++. .+++++.+. + +
T Consensus 160 ~~~~~l~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~---~ 210 (408)
T PRK09874 160 LAGGLLADS-----------------------YGLRPVFFITASVLFLCFLVTLFCIRENFQP--VSKKEMLHM-R---E 210 (408)
T ss_pred HHHHHHHHH-----------------------hCHHHHHHHHHHHHHHHHHHHHHHhccCccc--ccchhhhHH-H---H
Confidence 999988643 4599999987776655443 44556665422 000000000 0 0
Q ss_pred HHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHH
Q 010194 260 VLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEV 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
..+.++++.. .+.+.. ..............+.+.+..+.+..... ..
T Consensus 211 --------------------~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 257 (408)
T PRK09874 211 --------------------VVTSLKNPKL---VLSLFV---TTLIIQVATGSIAPILTLYVRELAGNVSN-------IA 257 (408)
T ss_pred --------------------HHHhCcCCch---HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhccchH-------HH
Confidence 0001111111 011111 11111112222233344444443221111 00
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCc
Q 010194 340 YKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (515)
. ..........++.+++.+..+++.||++||+.+..+..+..++.+.+.... +.+ ...+..+..+.+....
T Consensus 258 ~-~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~g~~~~~~ 328 (408)
T PRK09874 258 F-ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQ-------TPL-QLGILRFLLGAADGAL 328 (408)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhc-------cHH-HHHHHHHHHHhhhHhh
Confidence 0 112233444566677788899999999999998887776665555443322 122 2222333333333334
Q ss_pred cccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 420 NTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 420 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
.+...+...+..|++.+|+.+++.+....+|..++|.+.|.+.+..||+..|.+.+++.+++.+..++
T Consensus 329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~ 396 (408)
T PRK09874 329 LPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWN 396 (408)
T ss_pred HHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 55566667788888999999999999999999999999999999999999999998888887776654
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-30 Score=247.71 Aligned_cols=350 Identities=14% Similarity=0.096 Sum_probs=242.4
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 010194 32 FFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVIC 111 (515)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~ 111 (515)
.+...+....+.+..|.+.+++ +.++++.+++.+++.++..++++++|+++||+|||+++..+..+.+++
T Consensus 15 ~~~~~~~~~~~~p~~~~i~~~~----------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~ 84 (401)
T PRK11043 15 SMLGFLATDMYLPAFKAIQADL----------QTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALG 84 (401)
T ss_pred HHHHHHHHHHHHhhHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHH
Confidence 4444556677788889999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010194 112 SLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFK 191 (515)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 191 (515)
.+++.++++ ++.+++.|+++|++.+...+...+++.|++|++++++..+.......+|..++|.+++.+.
T Consensus 85 ~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~---- 154 (401)
T PRK11043 85 SLGMLWVES------AAQLLVLRFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLL---- 154 (401)
T ss_pred HHHHHHhcC------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 999999988 8999999999999988877888899999999999999999998889999999999999885
Q ss_pred cCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhh
Q 010194 192 ANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEK 271 (515)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (515)
+..+||+.|++.++..++..+..++++|+++. . ++ ++..
T Consensus 155 -------------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~~~----------------- 193 (401)
T PRK11043 155 -------------------NHFGWQAIFATLFAITLLLILPTLRLKPSKKA--R--KQ-SQDA----------------- 193 (401)
T ss_pred -------------------hcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc--c--cc-chHH-----------------
Confidence 34569999998777776665555556655432 0 00 0000
Q ss_pred HHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHH
Q 010194 272 VEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIAL 351 (515)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
.+.++.++++.. +...+........++....+.|.+.++.|+++...+ .......
T Consensus 194 ------~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~g------------~~~~~~~ 248 (401)
T PRK11043 194 ------LTFKQLLKSKTY-------LGNVLIFAACSAAFFAWLTGSPFILEQMGYSPADIG------------LSYVPQT 248 (401)
T ss_pred ------HHHHHHHcChhH-------HHHHHHHHHHHHHHHHHHHHhHHHHHHcCCCHHHHH------------HHHHHHH
Confidence 001111222211 111111222223334445566777776666544321 1334455
Q ss_pred hhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccC
Q 010194 352 CSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIF 431 (515)
Q Consensus 352 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (515)
++.+++.++.+++.||+++|+..........++.+.+....... ....+ .........+.......+...+...|..
T Consensus 249 ~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (401)
T PRK11043 249 IAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLS--HPSLV-PLLIPFCVMAAANGAIYPIVVAQALRPF 325 (401)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhc--cCcHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 66778888899999999998876665555544443332221101 11122 2222222222333334555555666666
Q ss_pred chhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHH
Q 010194 432 PARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKAL 471 (515)
Q Consensus 432 p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~ 471 (515)
| +.++++.|+.+.....+...++.+.+.+.+.......+
T Consensus 326 ~-~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~ 364 (401)
T PRK11043 326 P-QATGKAAALQNTLQLGLCFLASLLVSALISTPLLTTGS 364 (401)
T ss_pred c-ccChHHHHHHHHHHHHHHHHHHHHHHHccCCChhHHHH
Confidence 6 57999999999999999999999999998754444433
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-30 Score=247.63 Aligned_cols=362 Identities=10% Similarity=0.045 Sum_probs=238.9
Q ss_pred HHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhh---hc-
Q 010194 43 SLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASG---LS- 118 (515)
Q Consensus 43 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~---~~- 118 (515)
...++.+.+++ +.++++.|++.+.+.++..+++++.|+++||+||||++..+..+++++++++. +.
T Consensus 33 ~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~ 102 (402)
T TIGR00897 33 QGWLSPFLKAL----------GLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGH 102 (402)
T ss_pred HHhHHHHHHHh----------CCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34555666788 99999999999999999999999999999999999999999999998877653 32
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcCCCCC
Q 010194 119 FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI-LSGGMVAIIVSAAFKANFPAP 197 (515)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~-~~g~~l~~~l~~~~~~~~~~~ 197 (515)
.+ ++.+++.|+++|++.+...+...+.+.|++|+++|++++|+.+.+.++|. .+++++++.+.
T Consensus 103 ~~------~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~---------- 166 (402)
T TIGR00897 103 AN------YPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAI---------- 166 (402)
T ss_pred cc------HHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------
Confidence 34 78889999999999888778888889999999999999999999999997 57898888774
Q ss_pred ccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhh
Q 010194 198 IYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEK 276 (515)
Q Consensus 198 ~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (515)
+..||+..++......++ ..+..++.+|.++. .++++ +++.+ +.
T Consensus 167 -------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~---------------~~---- 211 (402)
T TIGR00897 167 -------------PAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP--QHMQT-REKFS---------------EL---- 211 (402)
T ss_pred -------------cccchHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccC-Ccchh---------------hH----
Confidence 334555544443222222 22233344443221 00000 00000 00
Q ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhh
Q 010194 277 GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVP 356 (515)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (515)
.+..+..++++ .++...+..++.....+....+.|.+.++.|+++.+.+ .......++.++
T Consensus 212 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~------------~~~~~~~~~~~i 272 (402)
T TIGR00897 212 GKAATILFTNP-------NVLLGGMVRIINTIGLFGFAVFLPMFVAELGFSTSEWL------------QIWGTFFFTNIV 272 (402)
T ss_pred HHHHHHHHcCh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHH------------HHHHHHHHHHHH
Confidence 00001111211 22333334444455667777788988887776654321 144455677888
Q ss_pred HHHHHHHHHHhhchhhHHH-HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhh
Q 010194 357 GYWFTVALIDKIGRFAIQL-MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARL 435 (515)
Q Consensus 357 ~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (515)
+.+..|+++||++||+... .+.....++...+....... . ..........+..+....+..+. .....|..| ++
T Consensus 273 g~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~--~-~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~~~-~~ 347 (402)
T TIGR00897 273 FNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF--G-HSFAVALIIAIALGIFLAGYVPL-AAVFPTLAP-KH 347 (402)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc--C-CcHHHHHHHHHHHHHHHHHHHHH-HHHHHhhCc-ch
Confidence 9999999999999888754 22233333322222111000 1 11222222222222222222332 345567655 68
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 436 RSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 436 ~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
|+++.|+.+...++++.++|.+.+.+.|..|+...+++.+++.+++.+...++|
T Consensus 348 ~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~~ 401 (402)
T TIGR00897 348 KGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFIR 401 (402)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999998888888777766653
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-30 Score=245.67 Aligned_cols=364 Identities=12% Similarity=0.040 Sum_probs=245.6
Q ss_pred hHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH-HHHHHH
Q 010194 31 GFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYG-MTLMMM 108 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~-~~~~~~ 108 (515)
.++..++......+.+|. +.+++ |.+..+.|++.+.+.+...+.+++.|+++||+||||.++ .+..+.
T Consensus 5 ~~~~~~~~~~~~~~~l~~~l~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~ 74 (375)
T TIGR00899 5 VAFLTGIAGALQFPTLSLFLSEEV----------RARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLA 74 (375)
T ss_pred HHHHHHHHHHHHhhHHHHHHHccc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 456666677777787776 56788 999999999999999999999999999999999988755 466666
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhH--HHHHHHHHHHHHHHHHHHHHHH
Q 010194 109 VICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF--IAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~--~~~~~~~~~~G~~~g~~l~~~l 186 (515)
.++.++++++++ ++.+++.|+++|.+.+...|...+++.|+.|+++|++. .+....+.++|.++|+.+++.+
T Consensus 75 ~~~~~~~~~~~~------~~~l~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l 148 (375)
T TIGR00899 75 ALACLLFAWNRN------YFLLLVLGVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWL 148 (375)
T ss_pred HHHHHHHHhcch------HHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHH
Confidence 777888888888 78899999999988888888888999999888777654 5777888899999999999988
Q ss_pred HHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhh
Q 010194 187 SAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVEL 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
. +..+||+.|++.++..++..+ ..+++||+|++. ++++ +
T Consensus 149 ~-----------------------~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~------------- 188 (375)
T TIGR00899 149 A-----------------------LGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGA--PGAL--T------------- 188 (375)
T ss_pred H-----------------------HhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCc--cccc--C-------------
Confidence 5 345699999998776665444 445588876531 1000 0
Q ss_pred hHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHH
Q 010194 266 EAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIAR 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+.+.++.++++.. +......+ ...........+.|.+++ +.+.++.+. +.
T Consensus 189 -----------~~~~~~~~~~~~~----~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~-----------g~ 239 (375)
T TIGR00899 189 -----------RLEVRGLLASRDT----RLLFVACT---LMWGCNILYIINMPLLIIHELGLPDKLA-----------GL 239 (375)
T ss_pred -----------cchhhhhhcCcch----HHHHHHHH---HHHHHHHHHHhhhHHHHHHHcCCCHHHH-----------HH
Confidence 0000011111111 11111111 111112222334455543 345443321 11
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 345 AQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
......+..+++.++.+++.||++||+.+..+..+..+....+.... +.+ ......+..++......+...
T Consensus 240 -~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~g~~~g~~~~~~~ 310 (375)
T TIGR00899 240 -MMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADN-------SLW-ALLMLQLLNAIFIGILAGIGM 310 (375)
T ss_pred -HHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 23333445566778899999999999988776665544443332221 122 222222222222222245556
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
.+..|..|+ ++++++++.+...++|..++|.+.|.+.+..|++..+.+.+++.+++.++..+++
T Consensus 311 ~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 374 (375)
T TIGR00899 311 LYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIK 374 (375)
T ss_pred HHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheec
Confidence 677888875 5679999999999999999999999999999999999988888888877765553
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=249.74 Aligned_cols=368 Identities=16% Similarity=0.235 Sum_probs=266.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhc
Q 010194 61 SPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFG 140 (515)
Q Consensus 61 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~ 140 (515)
..++++.++.+++.+.++.|+.+++++.|+++||+|.|+++..+.++.++++++...+.+.+ ++.+++.|++||++
T Consensus 66 ~~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~----~~~~~~~R~lqGl~ 141 (466)
T KOG2532|consen 66 GEYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIG----FYLLLVLRFLQGLG 141 (466)
T ss_pred ceecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhc----chhhHHHHHHhHHH
Confidence 45689999999999999999999999999999999999999999999999999999987643 56889999999999
Q ss_pred cccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHH
Q 010194 141 IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILM 220 (515)
Q Consensus 141 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~ 220 (515)
.|..+|+...+.++|.|++||++..++...+..+|.+++.++++.+.+ ...||+.+|+
T Consensus 142 ~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~----------------------s~~GW~sifY 199 (466)
T KOG2532|consen 142 QGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCE----------------------SSLGWPSIFY 199 (466)
T ss_pred HhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc----------------------cCCCCchHHH
Confidence 999999999999999999999999999999999999999999999963 3478999999
Q ss_pred HhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHH
Q 010194 221 FGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGT 299 (515)
Q Consensus 221 ~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
+.++.+++..+ +.++..|+|..+ +.-.+++.+.+++-. .+++.+++.+.+++++++++ .+|.+
T Consensus 200 ~~g~~g~i~~~~w~~~~~d~P~~h---~~is~~El~~I~~~k------~~~~~~~~~~vP~~~i~ts~-------~vwai 263 (466)
T KOG2532|consen 200 VFGIVGLIWFILWFLFYSDSPSKH---PNISEKELKYIEKGK------SEAHVKKKPPVPYKAILTSP-------PVWAI 263 (466)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccC---CCCCHHHHHHHHhcc------cccccCCCCCCCHHHHHcCH-------HHHHH
Confidence 98888777544 556677777642 111112222111100 00000001233445555444 46778
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchh-------
Q 010194 300 TVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRF------- 371 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~------- 371 (515)
.+..++....++....+.|.|+++ ++++..+.+. ...+..+...+..+++|.++||..+|
T Consensus 264 ~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~------------~salP~l~~~~~k~~~g~lsD~l~~~~ls~t~~ 331 (466)
T KOG2532|consen 264 WISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGF------------LSALPFLAMAIVKFVAGQLSDRLTFRILSETTV 331 (466)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhH------------HHHHHHHHHHHHHHHHHHHHHHHhhccCchHhH
Confidence 888888889999999999999997 5555544222 55566667777888999999997552
Q ss_pred --hHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh
Q 010194 372 --AIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA 449 (515)
Q Consensus 372 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 449 (515)
..-.++....+++++.+.+.. ....+..++++.+..++.+.. .+-.+....+.. +++.+..+|+.+.+..+
T Consensus 332 rkifn~i~~~~~ai~l~~l~~~~-----~~~~~~a~~~l~~~~~~~g~~-~~Gf~~~~~~~a-pq~a~~l~g~~~~~~~~ 404 (466)
T KOG2532|consen 332 RKIFNTIAFGGPAVFLLVLAFTS-----DEHRLLAVILLTIAIGLSGFN-ISGFYKNHQDIA-PQHAGFVMGIINFVGAL 404 (466)
T ss_pred HHHHHhHHHHHHHHHHHeeeecC-----CCcchHHHHHHHHHHHHcccc-hhhhHhhhhhcc-chHHHHHHHHHHHHHHH
Confidence 222344444444444444332 112223333333333333222 222233334434 48899999999999999
Q ss_pred hHHHHHHHHHHhhh---ccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 450 GAIVGAFGFLYLAD---TSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 450 g~~i~~~~~~~l~~---~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
.++++|.+.+.+.. ...|+..|++.+++.+++.+++.+.-
T Consensus 405 ~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f~ 447 (466)
T KOG2532|consen 405 AGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFFG 447 (466)
T ss_pred HHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEee
Confidence 99999999999984 34699999999999988886666543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-29 Score=244.94 Aligned_cols=392 Identities=11% Similarity=-0.012 Sum_probs=255.0
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
++.....+..+++.++..++++...++..|.+++++ ++++.+.|++.+.+.+++.+++++.|+++||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~----------~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~ 90 (438)
T PRK10133 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY 90 (438)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344556666777778888999999999999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHh---hhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLAS---GLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF 174 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 174 (515)
|+++..+..+++++++++ .++++ ++.++++|+++|+|.|...+....++.|+.|+++|.+.+++.+....+
T Consensus 91 r~~l~~g~~~~~~~~~l~~~~~~a~~------~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~ 164 (438)
T PRK10133 91 KAGIITGLFLYALGAALFWPAAEIMN------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHH
Confidence 999999999999999876 45677 899999999999999999999999999988888777789999999999
Q ss_pred HHHHHHHHHHHHHHhhhcC-CCCCccCCCCCCccc-cCC---CchHHHHHHH-hHHHHHHHHHH-HHhcCCchhhHHHHh
Q 010194 175 GILSGGMVAIIVSAAFKAN-FPAPIYSANPAASTV-PEA---DYIWRIILMF-GAIPALLTYYW-RMKMPETARYTALVA 247 (515)
Q Consensus 175 G~~~g~~l~~~l~~~~~~~-~~~~~~~~~~~~~~~-~~~---~~~wr~~f~~-~~~~~~~~~~~-~~~~~e~p~~~~~~~ 247 (515)
|..+|+.++..+....... .........+ +.. ... ..+||++|+. ..+..++.++. ....||.++. +
T Consensus 165 G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~--~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~~----~ 238 (438)
T PRK10133 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMTP--EQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----N 238 (438)
T ss_pred HHHHHHHHHHHHHhcCCcccchhhhhccCh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc----c
Confidence 9999999988764111000 0000000000 000 000 0257777764 33333332222 2334543211 0
Q ss_pred ccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHH-hH-hc
Q 010194 248 KNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIF-TA-IG 325 (515)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 325 (515)
++ ++... +..++.++.++++..+ ...+..++.....+....+.+.++ ++ .|
T Consensus 239 ~~-~~~~~-------------------~~~~~~~~ll~~~~~~-------~~~l~~~~~~~~~~~~~~~~~~~l~~~~~g 291 (438)
T PRK10133 239 HS-DAKQG-------------------SFSASLSRLARIRHWR-------WAVLAQFCYVGAQTACWSYLIRYAVEEIPG 291 (438)
T ss_pred cc-ccccc-------------------chhhhHHHHHhCchHH-------HHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 00 00000 0000111222322221 111112222233333334455453 32 45
Q ss_pred ccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHH
Q 010194 326 WIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFV 405 (515)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (515)
.++.. +........++.++++++++++.||+++|+++..+..+..+.+.+..... ... .
T Consensus 292 ~s~~~------------ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-------~~~-~- 350 (438)
T PRK10133 292 MTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG-------GHV-G- 350 (438)
T ss_pred CCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-------ChH-H-
Confidence 55443 22266777788899999999999999999998887666655544433211 111 1
Q ss_pred HHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHH
Q 010194 406 VLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLG 481 (515)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~ 481 (515)
.......+++.....|..++...|..|+ ..+++.++..+ ..+|+.++|.+.|.+.|..| .+.+|++...+.+..
T Consensus 351 ~~~~~l~glg~~~i~P~~~s~a~~~~~~-~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~ 425 (438)
T PRK10133 351 LIALTLCSAFMSIQYPTIFSLGIKNLGQ-DTKYGSSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVI 425 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccch-hhccchhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 2222333444444578888888888874 46778888864 55788999999999999887 677776554444333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-29 Score=247.47 Aligned_cols=387 Identities=11% Similarity=0.073 Sum_probs=258.3
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hh
Q 010194 23 TAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM-----GR 97 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-----Gr 97 (515)
+.....++.++..+......+..+|...++. |.+.++++.+ +.....+ ++.+++|+++||+ ||
T Consensus 12 ~~~~~~~~l~~~~gl~~~~~~~~l~~~l~~~----------g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Gr 79 (491)
T PRK11010 12 PNSAILLILGFASGLPLALTSGTLQAWMTVE----------NIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGR 79 (491)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------CCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCC
Confidence 3345555666677778888888999998888 8999999987 4444444 6899999999999 99
Q ss_pred hhH-HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 98 KRV-YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 98 r~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
||. +..+.++.+++..++++.+.. .+++.+.+.|++.|++.+...+...+++.|++|+++|+++.++...+..+|.
T Consensus 80 rr~~ll~~~i~~~~~~~~~a~~~~~---~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~ 156 (491)
T PRK11010 80 RRGWLLATQLLLLVAIAAMGFLEPG---TQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAM 156 (491)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 986 667777777887777776431 1178899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAAD 256 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~ 256 (515)
++++.++..+.+ ...|||..|++.++..++..+..++.||+++. .++++ +..+
T Consensus 157 llg~~l~~~l~~----------------------~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~--~~~~~--~~~~- 209 (491)
T PRK11010 157 LVSGGLALWLAD----------------------RYLGWQGMYWLMAALLIPCIIATLLAPEPTDT--IPVPK--TLEQ- 209 (491)
T ss_pred HHHHHHHHHHHh----------------------cccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--ccccc--chhh-
Confidence 999999988852 13579999999877777666665667886532 10000 0000
Q ss_pred HHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHH-hHhcccCCcccchh
Q 010194 257 MSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIF-TAIGWIPKAKTMNA 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 335 (515)
+...+.++.++ ++..+...... +......+....+.+.++ +..|+++.+
T Consensus 210 ------------------~~~~~l~~~~~----~~~~~~~ll~~---~l~~~~~~~~~~~~~~~l~~~~G~s~~~----- 259 (491)
T PRK11010 210 ------------------AVVAPLRDFFG----RNNAWLILLLI---VLYKLGDAFAMSLTTTFLIRGVGFDAGE----- 259 (491)
T ss_pred ------------------hHHHHHHHHHc----CcCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCHHH-----
Confidence 00001111121 11111111111 122222222233344443 445665543
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHh
Q 010194 336 IEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFS 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (515)
.+........++.+++.+++|++.||+++|+.+..+..+..+....+..... . ..+.+.......+.....
T Consensus 260 ------~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~-~--~~~~~~l~~~~~l~~~~~ 330 (491)
T PRK11010 260 ------VGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSI-T--DKNLYSMGAAVFFENLCG 330 (491)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh-c--cccHHHHHHHHHHHHHHH
Confidence 2222334556788889999999999999988777665554544433322111 0 111111111112211111
Q ss_pred hcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcccc
Q 010194 416 NFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
+.+ .+..+++..+..+++.+++..|+.+....+|..+++.+.|.+.|..||+..|.+.+++++++.+....++++
T Consensus 331 g~~-~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 331 GMG-TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred HHH-HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 111 233456777888888999999999999999999999999999999999999999888888887777766554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-32 Score=247.71 Aligned_cols=375 Identities=15% Similarity=0.145 Sum_probs=247.1
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
..+..++.+.++++...++..|++.+..+.+.+++.+ |++++..|++++.+.+.+.+++|+.|+++|||+
T Consensus 27 ~~~~~~~~l~il~~vnlmny~Dr~~iagv~~~v~~~f----------ni~~s~~Gll~~vf~v~~~i~sPl~gyLadryN 96 (493)
T KOG1330|consen 27 SMKSPTLTLVILCLVNLMNYADRYTIAGVLKEVQTYF----------NISDSELGLLQTVFIVVFMIASPLFGYLADRYN 96 (493)
T ss_pred ccccchHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhc----------CCCchhccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence 3455677888899999999999999999999999999 999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
||+++.+|..+|.++.++++++.. ||++.++|.+.|+|++...+.++++++|.+|.++|++++++++.+..+|.
T Consensus 97 R~~v~~vG~~iW~~Av~~~~fs~~------Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGs 170 (493)
T KOG1330|consen 97 RKRVIAVGIFIWTLAVFASGFSNH------FWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGS 170 (493)
T ss_pred cceEEeeHHHHHHHHHHHHHHHHH------HHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhccccc
Confidence 999999999999999999999966 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
.+|.+.+..+...... |||.|+..++++++..+ ..++.+|+++. .+++.+.+.
T Consensus 171 glG~vvgs~va~~~~~----------------------Wr~af~~~avl~vi~~~L~~~f~~eP~rg--a~~~~~~~~-- 224 (493)
T KOG1330|consen 171 GLGYVVGSVVASLTFW----------------------WRWAFRGSAVLGVIVGLLVFLFVREPERG--ARDEVDGEN-- 224 (493)
T ss_pred ceeEEeeeeeccCccc----------------------eEEEEEeehHHHHHHHHHHHhhccCcccc--cccccccCC--
Confidence 9999999988644332 99999998888877554 45666776542 000000000
Q ss_pred HHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhh-hhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccch
Q 010194 256 DMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFV-RRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMN 334 (515)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
+ ......+.++..+.... +......+......+..+..-+....+.+...+-.+...
T Consensus 225 --------------~--~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv~Gs~sww~p~~~~~~~~~~~~~~------ 282 (493)
T KOG1330|consen 225 --------------K--MVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFVIGSLSWWAPAFIYYSYELIGFDH------ 282 (493)
T ss_pred --------------c--CCCCccchHHHHHHHHccCceeeehHHHHHHHHhccccchhhhhHHHHHHHHhCCcc------
Confidence 0 00011111111111111 110011222222222222222222222222222222111
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchh----hHHHHHHHHHHH----HHHHHHhhhhcccCCCchHHHHH
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRF----AIQLMGFFFMTV----FMFALAIPYHHWTLPDHRIGFVV 406 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~----~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 406 (515)
..+.+...+...++++|.+.+|.++||+.|+ ......-..++. +..++..... .........+
T Consensus 283 ------~~~~ifg~vt~~~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~---~~~~s~~~~~ 353 (493)
T KOG1330|consen 283 ------NATLIFGGVTCAGGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA---FTSSSMIFGL 353 (493)
T ss_pred ------ccchhhhhHHHhhchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh---hhhHHHHHHH
Confidence 1244466777778888888888899885321 111211111111 1111111110 1112222222
Q ss_pred HHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhc
Q 010194 407 LYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADT 464 (515)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~ 464 (515)
++.++.-.......+...-+..|+.|++.|.+++++-..+..+ |.+-+|++.|.+.|.
T Consensus 354 il~~~g~~~~~~~~a~n~~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~ 412 (493)
T KOG1330|consen 354 ILFLVGETISWFNWATNNPIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDK 412 (493)
T ss_pred HHHHHHHHHHhcccccccceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHH
Confidence 2222222222222333445668889999999999998877765 666677799999883
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-29 Score=242.83 Aligned_cols=368 Identities=12% Similarity=0.026 Sum_probs=243.0
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMM 107 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 107 (515)
.+++.+...+.........+.+.+++ +.+..+.+++.+.+.+++.++++++|+++||+|||++++.+..+
T Consensus 8 l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~ 77 (393)
T PRK11195 8 IMAAQFFSALADNALLFAAIALLKEL----------HYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGI 77 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----------CCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHH
Confidence 34455555554444455566667888 88899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
.++++++++++.+ . ++.|+++|++.+...|...+++.|++|+++|+++.++.+....+|.++||.+++.+.
T Consensus 78 ~~~~~~~~~~~~~------~---~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~ 148 (393)
T PRK11195 78 KLLGCLLMLFGIH------P---LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALA 148 (393)
T ss_pred HHHHHHHHHHHHH------H---HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988877655 3 788999999999999999999999999999999999999999999999999999986
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhH
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEA 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+. .|+..+.+.+...++..+..+.+||+|++. ++++ ++..+..++..
T Consensus 149 ~~------------------------~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~--~~~~-~~~~~~~~~~~------ 195 (393)
T PRK11195 149 DP------------------------HAEAALAVCALIYLLAALFNLFIPRLGARR--PGQS-WNPIALLRDFF------ 195 (393)
T ss_pred HH------------------------HHHHHHHHHHHHHHHHHHHHhcCCCCcccc--cccC-CCHHHHHHHHH------
Confidence 32 277777766555555555556788876431 1111 00000000000
Q ss_pred hhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHH
Q 010194 268 EQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQ 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
+..+..++++..+. .++...+.+.. ........+.+.++ .+.++.+. ...
T Consensus 196 ----------~~~~~l~~~~~~~~---~~~~~~~~~~~----~~~~~~~~~~~~~~~lg~s~~~~------------G~~ 246 (393)
T PRK11195 196 ----------HACRVLWRDKLGRF---SLAGTTLFWGA----GATLRFLVLAWAPVALGITLNQP------------AYL 246 (393)
T ss_pred ----------HHHHHHHhCchhHH---HHHHHHHHHHH----HHHHHHHHHHHHHHHcCCChhHH------------HHH
Confidence 00012222222211 11111111221 12222223333332 34444332 225
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccc
Q 010194 347 TLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVV 426 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (515)
.....++.+++.+..+++.||.++++.+..+.. .++....+.... +.+......+..+.......+...+.
T Consensus 247 ~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~~~--------~~~~~~~~~~~~G~~~g~~~~~~~~~ 317 (393)
T PRK11195 247 QAVVAIGIAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMALQH--------SLLPAYPLLILIGALGGFFVVPMNAL 317 (393)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHHHHh--------HHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 566777888899999999999888887766643 333332222211 22222222222222222223445566
Q ss_pred ccccCchhh-hhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 427 PAEIFPARL-RSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 427 ~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
..+..|++. +|++.++.+...+++..++..+.+.+ +..|.+..+.+.+...+++..+.+
T Consensus 318 ~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 377 (393)
T PRK11195 318 LQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL 377 (393)
T ss_pred HHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence 677766554 79999999999999999999999865 678888888887777776666665
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-29 Score=251.17 Aligned_cols=380 Identities=22% Similarity=0.289 Sum_probs=271.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+.....+..+++++|..+|++++|+++||+|||++++.++++..++.+++++++| ++.+++.|+++|++.++
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~------~~~~~~~Rfl~G~~~~~ 187 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPN------YWMFLIFRFLSGFFGSG 187 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCc------HHHHHHHHHHHHhhccc
Confidence 567788899999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhH
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGA 223 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~ 223 (515)
.......++.|++++++|+.+..+ ......+..+++++++++.. +||+.+++..
T Consensus 188 ~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~-------------------------~Wr~~~~~~~ 241 (521)
T KOG0255|consen 188 PLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR-------------------------DWRWLFWIIS 241 (521)
T ss_pred hhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh-------------------------hHHHHHHHHH
Confidence 999999999999999999999999 66666777777777777752 4999999999
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhh-----hhHhhhhH---HH------hhcCCcchhhhhhhh
Q 010194 224 IPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVE-----LEAEQEKV---EQ------EKGKNDFGLFSAKFV 289 (515)
Q Consensus 224 ~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~---~~------~~~~~~~~~~~~~~~ 289 (515)
++.++.++.+++.||+|+|+. .+++.+++.+.+++..+.+ ..+..+.. ++ +++....++++.+..
T Consensus 242 ~~~~~~~~~~~l~~Es~rwl~-~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l 320 (521)
T KOG0255|consen 242 IPSGLFLLLWFLPPESPRWLL-SKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISFLDLFRTPRL 320 (521)
T ss_pred HHHHHHHHHHHccCcChHHHH-HcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCchhhhhcCHHH
Confidence 988887777777779999973 3444455666666554321 11111110 00 111234555555543
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc
Q 010194 290 RRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIG 369 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 369 (515)
++ ..+...+.++.....+++.......+-.+ .. ............+....+...|+.|
T Consensus 321 ~~---~~~~~~~~~~~~~~~y~gl~~~~~~lg~~-----------~~--------~~~~~~~~~~~p~~~~~~~~~~~~g 378 (521)
T KOG0255|consen 321 RY---RTLYLLFIWFVFSLVYYGLSLNVSGLGGN-----------IY--------LNFTLSGLVELPAYFRNGLLLPEFG 378 (521)
T ss_pred HH---HHHHHHHHHHHHhHHHHhhhhhhhhcCch-----------HH--------HHHHHHHHHHhhHHHHHHHHHHHhC
Confidence 33 45555556665666666655433321111 10 0222223356666777789999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh
Q 010194 370 RFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA 449 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~ 449 (515)
||.....+..+..++++...+.... ...+...++..+..++...+.. ..+.+..|++|+..|..+.+..+....+
T Consensus 379 R~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~pt~~r~~~~~~~~~~~~~ 453 (521)
T KOG0255|consen 379 RRPPLFLSLFLAGIGLLLFGWLPDD----LGGWLHWILPLLGKFFIGSAFN-LIFLYSAELIPTVVRNTAVGAISAAARL 453 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhcc----chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHHHHHHH
Confidence 9999999999999988888776521 1111233333333334444433 4478899999999999999999999999
Q ss_pred hHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH-HhccccCCCChhhhhhhhh
Q 010194 450 GAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFT-FLVPESKGKSLEEMSGEAE 504 (515)
Q Consensus 450 g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 504 (515)
+.+++|.+...... ......+.+++....+..++. .++||++++.+.+..++.+
T Consensus 454 ~~i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 454 GSILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 99999998865543 333333333455555555555 6899999988766554444
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.8e-29 Score=240.66 Aligned_cols=378 Identities=14% Similarity=0.041 Sum_probs=242.6
Q ss_pred hhHHHHHH-HHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 19 WYHFTAIV-IAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 19 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
+.++..+. .+.+..+...++.....+.+|.+.+++ +.+.++.++..+++.+++.++++++|+++||+||
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~i~~~~----------~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Gr 80 (413)
T PRK15403 11 HAATLFFPMALILYDFAAYLTTDLIQPGIINVVRDF----------NADVSLAPASVSLYLAGGMALQWLLGPLSDRIGR 80 (413)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCc
Confidence 33344333 334445667778888899999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL 177 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 177 (515)
|++++.+..++++++++++++++ ++.++++|+++|++.+...+...+++.|++|+++|++++++...+..+|..
T Consensus 81 r~~l~~~~~~~~~~~~~~~~a~~------~~~l~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (413)
T PRK15403 81 RPVLITGALIFTLACAATLFTTS------MTQFLIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPI 154 (413)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998 899999999999998876777788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCchhhHHHHhccHHHHHHH
Q 010194 178 SGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETARYTALVAKNAKQAAAD 256 (515)
Q Consensus 178 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~ 256 (515)
+||++++.+.+ ..|||+.|++.++..++..+. .+.+||+++. . +++. +....
T Consensus 155 ~g~~lg~~l~~-----------------------~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~--~-~~~~-~~~~~ 207 (413)
T PRK15403 155 IGPLSGAALMH-----------------------FVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR--G-AVPF-SAKSV 207 (413)
T ss_pred HHHHHHHHHHH-----------------------hcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc--c-CCCC-ChHHH
Confidence 99999998853 345999999977776665543 4567887532 0 0000 00000
Q ss_pred HHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHh-cccCCcccchh
Q 010194 257 MSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAI-GWIPKAKTMNA 335 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 335 (515)
.++.++.++++ .++...+.........+....+.|.++++. |+++...+.
T Consensus 208 --------------------~~~~~~ll~~~-------~~~~~~l~~~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl-- 258 (413)
T PRK15403 208 --------------------LRDFRNVFRNR-------LFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMTTSQFAW-- 258 (413)
T ss_pred --------------------HHHHHHHHcCH-------HHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCCCHHHHHH--
Confidence 00111122221 223333333344445556666778777663 554443221
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHh
Q 010194 336 IEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFS 415 (515)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (515)
.......+.+++..+.+.+.++..+++.......+..++..++....... .+..+.......+. +.+
T Consensus 259 ----------~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~--~~~~~~~~~~~~l~-~~G 325 (413)
T PRK15403 259 ----------TQVPVFGAVIVANAIVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW--PHVWLWSVLGTSLY-AFG 325 (413)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHc--cccHHHHHHHHHHH-HHH
Confidence 33344445555556666665444443433322223333333322211001 11111112222222 222
Q ss_pred hcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 010194 416 NFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGML 483 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 483 (515)
.....|......-+. ....+|++.++.+.....+..+++...+++.+. +-...+...++++.+...
T Consensus 326 ~~~~~p~~~~~al~~-~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 326 IGLIFPTLFRFTLFS-NNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred HHHHhHHHHHHHhcc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHHH
Confidence 221233333222111 123479999999999999999999999988765 555666655555444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=247.36 Aligned_cols=346 Identities=19% Similarity=0.263 Sum_probs=244.5
Q ss_pred HHhHHHHHHhhhHHHHHHh-hhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 010194 29 GMGFFTDAYDLFCISLVTK-LLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMM 107 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 107 (515)
+++.+...++.....+..| .+.+++ |.+..+.+++.+.+.++..+++++.|+++||+|||+++..+.++
T Consensus 2 ~l~~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~ 71 (352)
T PF07690_consen 2 FLAFFLSGFGFSIISPALPLYLAEEL----------GLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLL 71 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHCCS----------TTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhh
Confidence 4566777888888899999 888999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
.+++.++..++++ ++.+++.|++.|++.+...+...+++.|++|+++|++++++...+.++|.++++.+++.+.
T Consensus 72 ~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~ 145 (352)
T PF07690_consen 72 FALGSLLLAFASN------FWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLI 145 (352)
T ss_dssp HHHHHHHHHHHCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhHHHHhhhhhh------HHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhh
Confidence 9999777777666 6799999999999999999999999999999999999999999999999999999999883
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhh
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETARYTALVAKNAKQAAADMSKVLQVELE 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
+..+||+.|++.++..++..++ .++++++|+.....++++++
T Consensus 146 -----------------------~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~-------------- 188 (352)
T PF07690_consen 146 -----------------------SYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE-------------- 188 (352)
T ss_dssp -----------------------CHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT--------------
T ss_pred -----------------------hccccccccccccchhhhhhhhHhhhhhhcccccccccccccc--------------
Confidence 4566999999988887776553 34555554431111111000
Q ss_pred HhhhhHHHhhcCC-cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHH-HhHhccc-CCcccchhHHHHHHHH
Q 010194 267 AEQEKVEQEKGKN-DFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDI-FTAIGWI-PKAKTMNAIEEVYKIA 343 (515)
Q Consensus 267 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 343 (515)
+.++++..+ .+...+++.. +......+.....+.....+.|.+ .+..+++ ..+ .
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------~ 245 (352)
T PF07690_consen 189 ----SKKPKPLKPGFKSLFKNPVL-------WILLIAFFLFFFVFSGFSFFLPLYLQEVLGFSGPSQ------------A 245 (352)
T ss_dssp ------HHHCCCH-CTHHHHHHCC-------HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCTHHH------------H
T ss_pred ----cccccccccccccccccchh-------hhhhhhhhHHHHHHHHhhcccchhhhhccCCCHHHH------------H
Confidence 000000011 1222222211 122222223333455566667766 3445555 121 2
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccc
Q 010194 344 RAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTT 423 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (515)
........+..+++.++.+++.||+++|+..........+..+.+...... .+...... ..+..+.......+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~g~~~~~~~~~~ 320 (352)
T PF07690_consen 246 GLLFSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS----SSPVWLII-ALFLIGFGFGIVFPIL 320 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH----CHHHHHHH-HHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 224555666677778899999999998877777666666666555543311 11222222 2333333333346778
Q ss_pred cccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 424 FVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 424 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.++..|..|++++|++.|+.+...+++..++|
T Consensus 321 ~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 321 FSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 88999999999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=239.04 Aligned_cols=354 Identities=14% Similarity=0.126 Sum_probs=232.3
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMM 107 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 107 (515)
..+..+..........+.+|.+.+++ +.+..+.++..+.+.++..+++++.|+++||+|||+.+..+.++
T Consensus 8 ~~~~~~~~~~~~~~~~~~lp~~~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~ 77 (392)
T PRK10473 8 SFALVLLYPAGIDMYLVGLPRIAADL----------NASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAAL 77 (392)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHH
Confidence 33344444555556668899999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
..++.+++.++++ ++.+++.|+++|++.+...+...+++.|++|+++|+++.++.+....+|..++|.+++.+.
T Consensus 78 ~~i~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~ 151 (392)
T PRK10473 78 FIIASLLCSLAET------SSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIM 151 (392)
T ss_pred HHHHHHHHHHhCc------HHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888 7889999999999999888999999999999999999999999999999999999988874
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHH-HHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhh
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTY-YWRMKMPETARYTALVAKNAKQAAADMSKVLQVELE 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
+..+||+.|++.++..++.. +..+++||+++. . ++++++..
T Consensus 152 -----------------------~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~--~-~~~~~~~~------------ 193 (392)
T PRK10473 152 -----------------------LKFPWQSLFYTMAAMGILVLLLSLFILKETRPA--R-APAASSKP------------ 193 (392)
T ss_pred -----------------------hCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc--c-cCCccchH------------
Confidence 34569999999776665543 344567776432 1 01000000
Q ss_pred HhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHH
Q 010194 267 AEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARA 345 (515)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
++.++.++++.... ......+.. ........+.|.++. +.|+++.. ...
T Consensus 194 -----------~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~~------------~~~ 243 (392)
T PRK10473 194 -----------RENSESLLNRFFLS---RLVITTLSV----TVILTFVNTSPVLLMEQMGFSRGE------------YAI 243 (392)
T ss_pred -----------HHHHHHHhCHHHHH---HHHHHHHHH----HHHHHHHHhCHHHHHHHcCCCHHH------------HHH
Confidence 00011112211111 111111111 111122233444443 34544322 112
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++.+++.++.+++.||+|||+.+..+..+..++.+++..... .........+...+...+. +. .
T Consensus 244 ~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~l~~~g~~~~~-~~--~ 313 (392)
T PRK10473 244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLALSPS-------HAVSLFGITLICAGFSVGF-GV--A 313 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh-HH--H
Confidence 445566777888899999999999999988888777776666554331 1111121112111111111 11 2
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHH
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGAN 478 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~ 478 (515)
...+..|.+.|+ |.......++..+++.+.+.+.+..|+.......+...
T Consensus 314 ~~~~~~~~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~~~ 363 (392)
T PRK10473 314 MSQALGPFSLRA---GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGILI 363 (392)
T ss_pred HHHHhccCcccc---cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 223444544443 44445556777778888888887777765444444433
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=246.97 Aligned_cols=391 Identities=14% Similarity=0.135 Sum_probs=257.8
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHH-HhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 010194 21 HFTAIVIAGMGFFTDAYDLFCISLV-TKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKR 99 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~ 99 (515)
.+.++..+++.++....+...++-. +..+.+|. +....+.+.+.++++++++++.+++|.+.||++..+
T Consensus 43 dl~i~~~~~~~y~~~~~d~~si~~a~l~g~~edl----------~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~ 112 (495)
T KOG2533|consen 43 DLFILPFLCYLYFHAYLDKSSIVNASLSGLKEDL----------KLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSK 112 (495)
T ss_pred HHHHHHHHHHHHHHHhcchhcchhHHHcCCcccc----------chhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHH
Confidence 3445566666677777777655432 34455666 888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 100 VYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 100 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
.+....+++++..++.....| ++.+++.|++.|+.++..+|....+++.|+.++||++.++++.+..++|.++|
T Consensus 113 ~l~~~~~~w~~~~~~~~~~~s------~~~~ialr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~g 186 (495)
T KOG2533|consen 113 GLSVSGILWGLFGFLTAAVHS------FPGLIALRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFG 186 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHhh------hHHHHHHHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHH
Confidence 999999999999988888888 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAAADMS 258 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~ 258 (515)
.+++..+.+..+. ....||||.|++.+++.++ .++.++++|+.|... .-.+++|..-..+
T Consensus 187 gliA~g~~~~~~~-----------------~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~--~fl~~~ek~~~~~ 247 (495)
T KOG2533|consen 187 GLIAYGVFKLNGS-----------------GGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKA--WFLTDEEKELVVE 247 (495)
T ss_pred HHHHHHhhhhcCC-----------------CCcCCceeehhHHHHHHHHHHheEEEEecCChhhc--cccchHHHHHHHH
Confidence 9999987653332 3567899999997766665 566678899998731 1111111111011
Q ss_pred HHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHH
Q 010194 259 KVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIE 337 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 337 (515)
+..+. +....+++ ..+..+++.... ..+|...+..++.....++...++|.++++ .+++..+.+.
T Consensus 248 ~~~~~------~~~~~~~~-~~~~~~~~a~~d---p~vw~~~l~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~---- 313 (495)
T KOG2533|consen 248 RLRES------PSGGIENK-FKWKGFKEALKD---PGVWPFSLCYFFLKLVNYGFSYWLPLYLKSNGGYSELQANL---- 313 (495)
T ss_pred HHHhc------cCCCcccc-cCHHHHHHHHhc---hhHHHHHHHHHHHhhccccHHHHHHHHHHcCCCcChHHhcc----
Confidence 11000 00000011 111112221111 246777788888888889999999999988 4466655444
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHh----hchhhHHHHHHHHHHHHH-HHHHhhhhcccCCCchHHHHHHHHHHH
Q 010194 338 EVYKIARAQTLIALCSTVPGYWFTVALIDK----IGRFAIQLMGFFFMTVFM-FALAIPYHHWTLPDHRIGFVVLYSLTF 412 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (515)
+.++..++++++.+++|+++|| ..+|........+..+.. +.+.... .........+..
T Consensus 314 --------ls~~~~~~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~--------~~~~~~~~~~~~ 377 (495)
T KOG2533|consen 314 --------LSTPYDVGGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLLAAA--------VLPGAYGAFLIG 377 (495)
T ss_pred --------ccchHHhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhc--------cchHHhHHHHhc
Confidence 7788888999999999999999 555555544444433333 2222111 111111111222
Q ss_pred HHhhcCccccccccccccCchhhh-hhhhHHHHHHhhhhHHHHHHHHHHh-hhccCchHHHHHHHH
Q 010194 413 FFSNFGPNTTTFVVPAEIFPARLR-STCHGISAASGKAGAIVGAFGFLYL-ADTSGVKKALLILGG 476 (515)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~g~~i~~~~~~~l-~~~~g~~~~~~~~~~ 476 (515)
........+......++....+.| -+..+........+++++|.+.... ...+++...|....+
T Consensus 378 ~~~~~~~~~~~~~w~s~~~~g~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~ 443 (495)
T KOG2533|consen 378 PYGLIATAIIALSWTSANLAGNTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA 443 (495)
T ss_pred chhhHHHHHHHHhhccccccchHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence 221222233444555555544444 4444444455555555555554433 334577777744433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=236.17 Aligned_cols=351 Identities=15% Similarity=0.145 Sum_probs=232.9
Q ss_pred hHHHHHH-hhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhc
Q 010194 40 FCISLVT-KLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLS 118 (515)
Q Consensus 40 ~~~~~~~-~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~ 118 (515)
....+.. +.+.+++ |.+..+.|++.+...++..+.+++.|+++||+|||+++..+.++.+++.+++.++
T Consensus 27 ~~~~~~~~~~~~~~~----------g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~ 96 (400)
T PRK11646 27 FVVFPLISIRFVDQL----------GWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA 96 (400)
T ss_pred HHHHHHHHHHHHHHh----------CCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh
Confidence 3334444 4567788 9999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 010194 119 FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPI 198 (515)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~ 198 (515)
++ ++.+++.|+++|++.+...+...+++.|++|+++|++++++.....++|..+||.+++.+.
T Consensus 97 ~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~----------- 159 (400)
T PRK11646 97 HE------PWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL----------- 159 (400)
T ss_pred cc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 88 8999999999999998888999999999999999999999999999999999999999985
Q ss_pred cCCCCCCccccCCCchHHHHHHHhHHHHHHHH-HHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhc
Q 010194 199 YSANPAASTVPEADYIWRIILMFGAIPALLTY-YWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKG 277 (515)
Q Consensus 199 ~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (515)
.++||+.|++.++..++.. +..++.||.++. +.+++..
T Consensus 160 -------------~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~----------------------- 198 (400)
T PRK11646 160 -------------QYDFRLVCATGAVLFVLAAAFNAWLLPAYKLS-----TVRTPVR----------------------- 198 (400)
T ss_pred -------------HhhHHHHHHHHHHHHHHHHHHHHHhCCccccc-----ccchhhH-----------------------
Confidence 2359999998776665543 334455553210 0000000
Q ss_pred CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhh-h
Q 010194 278 KNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTV-P 356 (515)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 356 (515)
++.++.++++. ++......+...........+.|.+.++.+..+.. .+. ......+..+ .
T Consensus 199 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----------~g~-l~~~~~~~~~~~ 259 (400)
T PRK11646 199 EGMTRVLRDKR-------FVTYVLTLTGYYMLAVQVMLMLPIMVNDIAGSPSA-----------VKW-MYAIEACLSLTL 259 (400)
T ss_pred HHHHHHHcCch-------HHHHHHHHHHHHHHHHHHHHhhhhhHHhhcCCchH-----------HHH-HHHHHHHHHHHH
Confidence 00111112111 11111111111122222345667777765443322 222 2222222233 2
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhh
Q 010194 357 GYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLR 436 (515)
Q Consensus 357 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (515)
..+...+..||++.++.+..+..+.+++..++.... +.+ .+.......+.......|...+++.|..|++.|
T Consensus 260 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~-~~~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~ 331 (400)
T PRK11646 260 LYPIARWSEKRFRLEHRLMAGLLIMSLSMFPIGMVS-------NLQ-QLFTLICLFYIGSIIAEPARETLSASLADARAR 331 (400)
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh-------hHH-HHHHHHHHHHHHHHHHHccHHHHHHhcCCcccc
Confidence 333344444556666666666666666655544322 112 222222222222223345666788899999999
Q ss_pred hhhhHHHHHHhhhhHHHHHHHHHHhhhccC----chHHHHHHHHHHHHHHHHH
Q 010194 437 STCHGISAASGKAGAIVGAFGFLYLADTSG----VKKALLILGGANFLGMLFT 485 (515)
Q Consensus 437 ~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g----~~~~~~~~~~~~~~~~~~~ 485 (515)
|+++|+.+....+|..++|.+.|.+.|..+ ....+...+.+++++.+..
T Consensus 332 g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (400)
T PRK11646 332 GSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLAL 384 (400)
T ss_pred hhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998642 3455655555555555443
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=231.17 Aligned_cols=382 Identities=11% Similarity=-0.023 Sum_probs=251.8
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMT 104 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~ 104 (515)
+..+++.++..++.....++..|.+++++ |++..+.|++.+.+.+++.+++++.|++.||+|||+++..+
T Consensus 5 ~~~~~~~f~~~G~~~~~~~~l~~~~~~~~----------~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g 74 (410)
T TIGR00885 5 FALITSLFALWGFANDITNPMVPQFQQAF----------TLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLG 74 (410)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 44556677778888888899999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhc---CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 010194 105 LMMMVICSLASGLS---FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGM 181 (515)
Q Consensus 105 ~~~~~i~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~ 181 (515)
..+++++.+++..+ ++ ++.+++.|++.|+|.|...+....++.+..|+++|++.+++.+...++|..+|+.
T Consensus 75 ~~l~~~g~~l~~~~~~~~~------~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 75 LFLYALGAFLFWPAAEIMN------YTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred HHHHHHHHHHHHHHHhhcc------HHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999886543 45 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccCC-CCCCc--cccCCCchHHHHHHHhHHHHHHHHHHHHh--cCCchhhHHHHhccHHHHHHH
Q 010194 182 VAIIVSAAFKANFPAPIYSA-NPAAS--TVPEADYIWRIILMFGAIPALLTYYWRMK--MPETARYTALVAKNAKQAAAD 256 (515)
Q Consensus 182 l~~~l~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~ 256 (515)
++..+............+.. .+... ....+..+||++|++.+++.++..+...+ .||.++. ++ ++.
T Consensus 149 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~~-----~~-~~~--- 219 (410)
T TIGR00885 149 VAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNHS-----DA-KQI--- 219 (410)
T ss_pred HHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-----cc-ccc---
Confidence 99888532110000000000 00000 00012357999999877666554444333 3332110 00 000
Q ss_pred HHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhH
Q 010194 257 MSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAI 336 (515)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (515)
+..++.++.++++.. +...+..++..........+.+.+.++.+...+. .
T Consensus 220 ------------------~~~~~~~~~~~~~~~-------~~~~l~~f~yvg~e~~~~s~l~~y~~~~~~~~~~-----~ 269 (410)
T TIGR00885 220 ------------------SFSASLSRLARIRHY-------REGVIAQFFYVGVQIMCWTFIIQYAVRLIPGMTA-----G 269 (410)
T ss_pred ------------------cchhhHHHHHhChhH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCH-----H
Confidence 000001111122111 1122222233333444455666665543322111 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhh
Q 010194 337 EEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSN 416 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 416 (515)
.+............+|+++++++.||+++|+.+.+...+..++.++..... +.. ....+.+.. ++.
T Consensus 270 -----~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~~-------~~~-~~~~l~~~g-lf~ 335 (410)
T TIGR00885 270 -----FAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFAG-------GHV-GLYCLTLCS-AFM 335 (410)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcC-------ChH-HHHHHHHHH-HHH
Confidence 111133334456678999999999999999988887777776666655432 112 222222333 333
Q ss_pred cCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc------CchHHHHHHHHH
Q 010194 417 FGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS------GVKKALLILGGA 477 (515)
Q Consensus 417 ~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~------g~~~~~~~~~~~ 477 (515)
...+|..++...+..+++.+..+.++...+ +|+.+.|.+.|.+.|.. +++.+|++-..+
T Consensus 336 s~~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~ 400 (410)
T TIGR00885 336 SLMFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC 400 (410)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence 334588889999999877655555555544 99999999999999953 466777654333
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-28 Score=233.90 Aligned_cols=336 Identities=16% Similarity=0.169 Sum_probs=224.7
Q ss_pred hhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 010194 38 DLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGL 117 (515)
Q Consensus 38 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~ 117 (515)
....+.+..|.+.+++ |.+.++.+++.+++.++..++.+++|+++||+|||+++..+.++.+++.+++.+
T Consensus 6 ~~~~~~p~~~~~~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~ 75 (377)
T PRK11102 6 AIDMYLPALPVIAADF----------GVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACAL 75 (377)
T ss_pred HHHHHhccHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHH
Confidence 3455678899999999 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010194 118 SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAP 197 (515)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~ 197 (515)
+++ ++.+++.|+++|++.+...+...+++.|++|+++|++++++.+....+|..+++.+++.+.+.
T Consensus 76 ~~~------~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~-------- 141 (377)
T PRK11102 76 AQT------IDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVW-------- 141 (377)
T ss_pred Hcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 988 899999999999999998899999999999999999999999999999999999999988643
Q ss_pred ccCCCCCCccccCCCchHHHHHHHhHHHHHHHH-HHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhh
Q 010194 198 IYSANPAASTVPEADYIWRIILMFGAIPALLTY-YWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEK 276 (515)
Q Consensus 198 ~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (515)
.+||+.|++.++..++.. ...+++||+++.. + +++.+..+ .
T Consensus 142 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~--------------------~ 183 (377)
T PRK11102 142 ---------------FSWHAIFWVLALAAILAAALVFFFIPETLPKE--R-RQPFHLRT--------------------T 183 (377)
T ss_pred ---------------cChHHHHHHHHHHHHHHHHHHHHhCCccCccc--c-cCCCChHH--------------------H
Confidence 459999998777666543 4445677764321 0 00000000 0
Q ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhh
Q 010194 277 GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTV 355 (515)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (515)
.++.++.++++. .+...+..+......+....+.|.++.+ .++++.+. ........++.+
T Consensus 184 ~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~------------g~~~~~~~~~~~ 244 (377)
T PRK11102 184 IRNFASLFRHKR-------VLGYMLASGFSFAGMFSFLTAGPFVYIELNGVSPQNF------------GYYFALNIVFLF 244 (377)
T ss_pred HHHHHHHHcChH-------HHHHHHHHHHHHHHHHHHHHcCHHHHHHHhCCCHHHH------------HHHHHHHHHHHH
Confidence 000011111111 1111222222222333333344544433 45544331 225556677788
Q ss_pred hHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhh
Q 010194 356 PGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARL 435 (515)
Q Consensus 356 ~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 435 (515)
++.++.+++.||+|||+.+..+..+..+..+.+...... +...+.......+....... ..+.......|..| +.
T Consensus 245 ~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~ 319 (377)
T PRK11102 245 VMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALL---DLGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP-HM 319 (377)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc-cc
Confidence 889999999999999998887776544433332221100 01112222222222222221 22333455677776 78
Q ss_pred hhhhhHHHHHHhh-hhHHHHHHHHH
Q 010194 436 RSTCHGISAASGK-AGAIVGAFGFL 459 (515)
Q Consensus 436 ~~~~~g~~~~~~~-~g~~i~~~~~~ 459 (515)
++++.++.+.... ++..+++.+.+
T Consensus 320 ~g~~~~~~~~~~~~~g~~~g~~~~~ 344 (377)
T PRK11102 320 AGTASSLAGTLRFGIGAIVGALLSL 344 (377)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999877654 45556665543
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.5e-28 Score=231.91 Aligned_cols=362 Identities=11% Similarity=0.062 Sum_probs=226.4
Q ss_pred HHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhhhHH-HHHHHHH
Q 010194 32 FFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALC-GTLAGQLFFGWLGDKMGRKRVY-GMTLMMM 108 (515)
Q Consensus 32 ~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr~Grr~~l-~~~~~~~ 108 (515)
.+..........+.+|. +.+++ +.+.++.|++.+...+ +..++.+++++ +||+||||.+ ..+.++.
T Consensus 24 ~~~~~~~~~~~~p~~~~~l~~~~----------~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~ 92 (393)
T PRK15011 24 AFLTGIAGALQTPTLSIFLTDEV----------HARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLG 92 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHH
Confidence 44444554555565555 67788 9999999999876655 66666655666 9999999875 5566666
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccch--hHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 109 VICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRG--AFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~--~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
+++..+.+++++ ++.+++.+.+.|...+...+...+++.|+.++++|. ...++.+.+.++|.++||++++.+
T Consensus 93 ~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l 166 (393)
T PRK15011 93 VLACTLFAWNRN------YFVLLFVGVFLSSFGSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYAL 166 (393)
T ss_pred HHHHHHHHHhhH------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 777888888887 677665555544444566788888889988776553 445788889999999999999998
Q ss_pred HHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHH-HHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhh
Q 010194 187 SAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTY-YWRMKMPETARYTALVAKNAKQAAADMSKVLQVEL 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~-~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
.+ ..|||..|++.++..++.. ...+++||.++.. + ++ ++
T Consensus 167 ~~-----------------------~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~-~~------------- 206 (393)
T PRK15011 167 AM-----------------------GFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKEL--P-LA-TG------------- 206 (393)
T ss_pred HH-----------------------hcChHHHHHHHHHHHHHHHHHHHhhcCccCCCC--c-cc-cc-------------
Confidence 63 3469999999777666544 4445678765321 0 00 00
Q ss_pred hHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHH
Q 010194 266 EAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIAR 344 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 344 (515)
+ .+.. ++. ++....... ........++....+.|.++++ .++++.. .+.
T Consensus 207 -----~-----~~~~----~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~-----------~g~ 256 (393)
T PRK15011 207 -----T-----LEAP----RRN--RRDTLLLFV---ICTLMWGTNSLYIINMPLFIINELHLPEKL-----------AGV 256 (393)
T ss_pred -----c-----cccc----ccc--cccHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----------HHH
Confidence 0 0000 000 010011111 1111112233334456666644 4544332 122
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 345 AQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
......+..+++.++.|+++||++||+.+..+.....+....+.... +.+..+....+.....+. ..+...
T Consensus 257 -~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~l~~~~~g~-~~~~~~ 327 (393)
T PRK15011 257 -MMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAH-------SPAILLGLQLLNAIYIGI-LGGIGM 327 (393)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 33334455677888999999999999877766554444332222111 122222211111111111 112334
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
.+..|..|+ .+++++++.+...++|..++|.+.|.+.|..||+..+.+.+++.+++.+..++.||
T Consensus 328 ~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 328 LYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 556788885 59999999999999999999999999999889999998888888887777766654
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-28 Score=235.82 Aligned_cols=362 Identities=11% Similarity=0.063 Sum_probs=240.5
Q ss_pred hHHHHHHhhhHHHHHH-hhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 010194 31 GFFTDAYDLFCISLVT-KLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMV 109 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 109 (515)
..+..........+.+ +.+.+++ |.+..+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+
T Consensus 15 ~~~~~~~g~~~~~~~l~~~l~~~~----------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~ 84 (395)
T PRK10054 15 SSLLLTIGRGATLPFMTIYLSRQY----------SLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFA 84 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHH
Confidence 3444455555555555 4566788 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010194 110 ICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAA 189 (515)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 189 (515)
++.++.+++++ ++.++++|++.|.+.+...+...++..|.+|+++|++++++.....++|.++||.+++.+..
T Consensus 85 ~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~- 157 (395)
T PRK10054 85 SGFIAIPLVNN------VTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM- 157 (395)
T ss_pred HHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 99999999888 78888899999988787788899999999999999999999999999999999999998842
Q ss_pred hhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHh
Q 010194 190 FKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAE 268 (515)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
.+|+..|++.++..++..+ ..+++||+++. . +++++.
T Consensus 158 -----------------------~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~--~--~~~~~~--------------- 195 (395)
T PRK10054 158 -----------------------QSINLPFWLAAICSAFPLVFIQIWVQRSEKA--I--ATETGS--------------- 195 (395)
T ss_pred -----------------------hccCcHHHHHHHHHHHHHHHHHHHHhccccc--c--ccchhh---------------
Confidence 3599999987776666543 33445554321 0 000000
Q ss_pred hhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHH
Q 010194 269 QEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTL 348 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (515)
..+.++.++++.. +......++..........+.+.+..... ..+ .+....+ ....
T Consensus 196 --------~~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~g-~~~~ 251 (395)
T PRK10054 196 --------VWSPSVLLQDKAL-------LWFTCSGFLASFVSGAFASCISQYVMVVA----DSD----FAEKVVA-VVLP 251 (395)
T ss_pred --------hhhhhhhccCcee-------hHHHHHHHHHHHHHHHhhhhHHHHHHHhc----ccc----hHHHHHH-HHHH
Confidence 0000111222211 11112222211222222223333332210 000 0111112 2344
Q ss_pred HHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccc
Q 010194 349 IALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPA 428 (515)
Q Consensus 349 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (515)
...+..+...+..+++.||.++|+.+..+..+..++...+.... +......+.....+.+.....|...+.+.
T Consensus 252 ~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~g~~~~~p~~~~~~~ 324 (395)
T PRK10054 252 VNAAMVVSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFSG-------NSLLLWGMSAAVFTVGEIIYAPGEYMLID 324 (395)
T ss_pred hhhhheeeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHHHcc-------hHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445555667888999999999988888777776665554321 12222222333333333333456667788
Q ss_pred ccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 010194 429 EIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGML 483 (515)
Q Consensus 429 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 483 (515)
+..|++.++++.+..+ ..++|..+||.+.|.+.|..|+...+.+.+.+..+..+
T Consensus 325 ~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 325 HIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred HhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 8999999999988765 67789999999999999999988888766554444433
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.1e-27 Score=229.01 Aligned_cols=352 Identities=15% Similarity=0.121 Sum_probs=232.3
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 010194 22 FTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVY 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l 101 (515)
++.+.+..+..+...+......+..|.+.+++ |.++.+.+++.+.+.++..++++++|+++||+|||+++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~p~~~~i~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~ 76 (394)
T PRK11652 7 VNLLFMLVLLVAVGQMAQTIYVPAIADMARDL----------NVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVI 76 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHH
Confidence 44445555555555666677788899999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGM 181 (515)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~ 181 (515)
..+..+..++.+++.++++ ++.+++.|++.|++.+...+....+..|++++++|+++.++...+..+|..++|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 150 (394)
T PRK11652 77 LVGMSIFILGTLVALFAHS------LTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPL 150 (394)
T ss_pred HHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888 8999999999999988888888889999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHHHHHHHHHHH
Q 010194 182 VAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAKQAAADMSKV 260 (515)
Q Consensus 182 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 260 (515)
+++.+. +..+||+.|++.++..++. .+..++.||+++.. +++++..+
T Consensus 151 i~~~l~-----------------------~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----- 198 (394)
T PRK11652 151 IGGLLT-----------------------TLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD----ARRTRVLA----- 198 (394)
T ss_pred HHHHHH-----------------------hccChHHHHHHHHHHHHHHHHHHHHhCCccCccc----cchhHHHH-----
Confidence 999885 3456999999876665543 44456678865431 11000000
Q ss_pred HHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHH
Q 010194 261 LQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEV 339 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 339 (515)
..++.++++..+ ..+...+..+ ........+.+.++++ .|+++..
T Consensus 199 ------------------~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~--------- 244 (394)
T PRK11652 199 ------------------SYRTLLSNRRFN----CYLLMLIGTL---AGIAVFEACSGVLMGAVLGLSSMT--------- 244 (394)
T ss_pred ------------------HHHHHHcChHHH----HHHHHHHHHH---HHHHHHHHhChHHHHHHcCCCHHH---------
Confidence 001111222111 1111111111 1122222233444444 4444322
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCc
Q 010194 340 YKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (515)
.+ .......++.+++.++.+++.||.+++.... .....+..+.+.... .......+...... ...+......
T Consensus 245 --~~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~g~~~~ 316 (394)
T PRK11652 245 --VS-ILFILPIPAAFFGAWFAGRPNKRFSTLMWQS--VICCLLAGLLMWIPG--WFGVMNVWTLLVPA-ALFFFGAGML 316 (394)
T ss_pred --HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HhccccHHHHHHHH-HHHHHHHHHH
Confidence 11 1344556677777778888888887433222 222222212111111 00001122222222 2222222234
Q ss_pred cccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc
Q 010194 420 NTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT 464 (515)
Q Consensus 420 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~ 464 (515)
.+...++..|..| +.++++.++.+....+|..+++.+.+.+.+.
T Consensus 317 ~~~~~~~~~~~~~-~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 317 FPLATSGAMEPFP-YLAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 5667777788887 6789999999999999999999999988654
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-27 Score=226.79 Aligned_cols=360 Identities=11% Similarity=0.014 Sum_probs=247.5
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH----HH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVY----GM 103 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l----~~ 103 (515)
+.+.++..........|.+|.+.+++ |.|.+++|++.+++.+...++++++|+++||+|||+.. ..
T Consensus 9 l~~~~~~~~~~~~~~~p~l~~~l~~~----------g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~ 78 (382)
T TIGR00902 9 LALGFFGYFCAYGIFLPFFPAWLKGI----------GLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLAL 78 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 44556666677788889999999999 99999999999999999999999999999999985433 22
Q ss_pred HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
+..+..+ ..+..+++ ++.+++.|+++|.+.+...|...++..|+ +++|++..+....+.++|.+++|+++
T Consensus 79 ~~~l~~~--~~~~~~~~------~~~l~~~~~l~~~~~~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~ 148 (382)
T TIGR00902 79 ASAIFAA--AFSAGAHN------AWLLFIAIGLFALFFSAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALF 148 (382)
T ss_pred HHHHHHH--HHHHhhhh------HHHHHHHHHHHHHHHccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHH
Confidence 2222222 23345666 89999999999999888889988887765 46789999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCch-hhHHHHhccHHHHHHHHHHHHH
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA-RYTALVAKNAKQAAADMSKVLQ 262 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p-~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
+.+.+. .|||..|++..+..++.++. +.++|++ +. ++++ ++.
T Consensus 149 g~l~~~-----------------------~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~~---~~~~-~~~--------- 191 (382)
T TIGR00902 149 GGLIGM-----------------------FDEQNILAILTAGLAFMLIG-FLIKPTIPPK---DAIP-EDE--------- 191 (382)
T ss_pred HHHHHH-----------------------cChhHHHHHHHHHHHHHHHH-HHcCCCCCCC---cccc-ccc---------
Confidence 999643 45999998865543333333 3334432 21 0000 000
Q ss_pred hhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHH
Q 010194 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKI 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
+++.++.++.+|++ .++......++..........+.|.++++.|.++...+
T Consensus 192 -----------~~~~~~~~~~l~~~-------~~~~~l~~~~l~~~~~~~~~~~~~~~l~~~g~s~~~~g---------- 243 (382)
T TIGR00902 192 -----------SQGDSAFIALLKNP-------MNLRFLAAVCLIQGAHAAYYGFSAIYWQAAGISASATG---------- 243 (382)
T ss_pred -----------cccchhHHHHHcCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHhHHH----------
Confidence 00001112222222 12222333333334455555577777777776655422
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccc
Q 010194 343 ARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTT 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (515)
. ......++.+++.++.+++.||+|+|+.+..+.+...+...++.... ..+.+....+..+.......+.
T Consensus 244 -~-l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~q~l~g~~~~~~~~~ 313 (382)
T TIGR00902 244 -L-LWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIE--------AFPLIFLLQILHCGTFAVCHLA 313 (382)
T ss_pred -H-HHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHh--------hHHHHHHHHHHHHHHHHHHHHH
Confidence 2 45567788888889999999999999999999888888877765433 2223333333333333333455
Q ss_pred ccccccccCchhhhhhhhHHHHH-HhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 010194 423 TFVVPAEIFPARLRSTCHGISAA-SGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLF 484 (515)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~g~~~~-~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 484 (515)
...++.+. |++.++++.++++. ...+|..++|.+.|.+.|..|+ ..|...+++.+++.++
T Consensus 314 ~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~ 374 (382)
T TIGR00902 314 AMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL 374 (382)
T ss_pred HHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence 66777887 88999999999874 5678999999999999999886 6677777777666544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-28 Score=232.64 Aligned_cols=357 Identities=18% Similarity=0.216 Sum_probs=233.4
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMT 104 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~ 104 (515)
...+++++....+...+++..|. +.+++ |++..+.+++.+.+.+++.+++++.|+++||+|||+.+.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (366)
T TIGR00886 4 FFSWFGFFLSFSVWFAFSPLAVQMIKDDL----------GLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLS 73 (366)
T ss_pred HHHHHHHHHHHHHHHHhHHhhhHHHHHHh----------CCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 34566666777778888999995 88999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcC-CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 105 LMMMVICSLASGLSF-GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 105 ~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
.++..++.+++++++ + ++.+++.|+++|++.+. .+....++.|++|+++|+++.++.....++|..+++.++
T Consensus 74 ~~~~~i~~~~~~~~~~~------~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~ 146 (366)
T TIGR00886 74 LLLLAIPCLWAGLAVQS------YSVLLLLRLFIGIAGGS-FASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVM 146 (366)
T ss_pred HHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHhchh-hHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999998 7 89999999999998654 567789999999999999999999988889998888888
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHH-HhHHH-HHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHH
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILM-FGAIP-ALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL 261 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~-~~~~~-~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+.+......... .....+||+.|+ ..++. .++.++...+.+|+|+.. ++++ ++..+ +
T Consensus 147 ~~l~~~~~~~~~-------------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~---~-- 205 (366)
T TIGR00886 147 PPIIGSLIFGAG-------------LPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK--PATG-KLSFK---G-- 205 (366)
T ss_pred HHHHHHHHhccc-------------ccccccccchhHHHHHHHHHHHHHHHHHhcccCCccc--ccch-hcccc---c--
Confidence 777654321000 012357999994 33433 334444455567765421 0000 00000 0
Q ss_pred HhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHH
Q 010194 262 QVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVY 340 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 340 (515)
+....+++..+..++.++++ .++...+..+......+....+.|.++++ .++++.+.
T Consensus 206 ------~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------- 263 (366)
T TIGR00886 206 ------ARWSVGTGALGDQLKVFRDR-------HTWILALLYSVTFGSFLGVSSIFAMFFKDQFGLSKVTA--------- 263 (366)
T ss_pred ------ccccccchhHHHHHHHHhcc-------chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH---------
Confidence 00000000000111122211 12222233333333445556666777655 35544331
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcc
Q 010194 341 KIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (515)
........+..+++.++.+++.||+|+|+....+......+..++..... .+.+.........+.....+.+ .
T Consensus 264 ---~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~-~ 336 (366)
T TIGR00886 264 ---GAYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGLV---SPLSLAVFIVLFVALFFFSGAG-N 336 (366)
T ss_pred ---HHHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcCC---CcchHHHHHHHHHHHHHHhccc-c
Confidence 22445556677788889999999999988777766665555554443221 0001222222222222233332 3
Q ss_pred ccccccccccCchhhhhhhhHHHHHHhhhh
Q 010194 421 TTTFVVPAEIFPARLRSTCHGISAASGKAG 450 (515)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 450 (515)
+..+....+..| +.+|+++|+.+..+++|
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 456677788887 68999999999988876
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-27 Score=229.98 Aligned_cols=381 Identities=11% Similarity=0.057 Sum_probs=240.0
Q ss_pred hHHHHHHhhhHH-HHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh-hhHHHHHHHHH
Q 010194 31 GFFTDAYDLFCI-SLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR-KRVYGMTLMMM 108 (515)
Q Consensus 31 ~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr-r~~l~~~~~~~ 108 (515)
.++.++.....+ +++.+.+.+++ |.+.++.|++.+++.++..++++++|+++||+|| |+++.++.++.
T Consensus 10 ~~~~~~~~~~~~~~~l~~~l~~~~----------g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~ 79 (418)
T TIGR00889 10 MSFLQWFIWGSWLVTLGSYMSKTL----------HFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAG 79 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 344444445555 55566677778 9999999999999999999999999999999965 77888888888
Q ss_pred HHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhh--------hccccccchhHHHHHHHHHHHHHHHHH
Q 010194 109 VICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMS--------EYANKKTRGAFIAAVFAMQGFGILSGG 180 (515)
Q Consensus 109 ~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~--------e~~~~~~r~~~~~~~~~~~~~G~~~g~ 180 (515)
.++..+..+.++ ++.+++.|++.|++.+...+...++.. |......|.+..| .+|.++|+
T Consensus 80 ~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G------~lG~~ig~ 147 (418)
T TIGR00889 80 ALLLFFAAQVTT------PAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG------TIGFIAAM 147 (418)
T ss_pred HHHHHHHHHhcC------HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh------hHHHHHHH
Confidence 888888888888 889999999999987776666655532 2222233445444 46888888
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHH
Q 010194 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKV 260 (515)
Q Consensus 181 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 260 (515)
.+++.+. ....|+. |++.++..++..+..+++||+|+. .++++ .+..+
T Consensus 148 ~l~g~l~-----------------------~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~--~~~~~-~~~~~----- 195 (418)
T TIGR00889 148 WAVSLLD-----------------------IELSNIQ-LYITAGSSALLGVFALTLPDIPVA--KSTAK-MSIKV----- 195 (418)
T ss_pred HHHHHhc-----------------------ccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC--ccccc-cCHHH-----
Confidence 8888762 1123654 445444444444455678887632 11000 00000
Q ss_pred HHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHH
Q 010194 261 LQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVY 340 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (515)
....+.++.+|++.. +...+..++..........+.+.+.++.++++.... ....
T Consensus 196 --------------~~~~~~~~~~k~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~ 250 (418)
T TIGR00889 196 --------------MLGLDAFILFKNKRM-------AIFFFFSMLLGAPLQITNIFGNGFLHEFGRNPEFAD----SFVV 250 (418)
T ss_pred --------------HhhhhHHHHhcCCCe-------eeHHHHHHHHHhHHHHHHHhHHHHHHHhcccccccc----hhhh
Confidence 000001111122211 112222222222223333555666666665543210 0000
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcc
Q 010194 341 KIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420 (515)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (515)
...........+..+++.+..+++.||+|+|+.+..+.++..++..++..... .........+..++.+.......
T Consensus 251 ~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~----~~~~~~~l~l~~~l~g~~~~~~~ 326 (418)
T TIGR00889 251 KNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDP----EYFGYALLFLSMIVYGCAFDFFN 326 (418)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCc----chhhHHHHHHHHHHHHHHHHHHH
Confidence 11223556666677888889999999999999999988888777655544210 00111222222222322222234
Q ss_pred ccccccccccCchhhhhhhhHHHH-HHhhhhHHHHHHHHHHhhhc------cCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 421 TTTFVVPAEIFPARLRSTCHGISA-ASGKAGAIVGAFGFLYLADT------SGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
+....++.|.+|++.|++++|+.+ ....+|.+++|.+.|.+.|. .||+.+|.+.+++.+++.+..+ +++|++
T Consensus 327 ~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 327 ISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 555677899999999999999997 56789999999999999987 4588899888888777776666 666654
Q ss_pred CC
Q 010194 493 GK 494 (515)
Q Consensus 493 ~~ 494 (515)
+.
T Consensus 407 ~~ 408 (418)
T TIGR00889 407 NA 408 (418)
T ss_pred cC
Confidence 43
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=230.60 Aligned_cols=377 Identities=16% Similarity=0.078 Sum_probs=217.3
Q ss_pred hHHHHHHhhhHHHHHHh-hhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 010194 31 GFFTDAYDLFCISLVTK-LLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMV 109 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 109 (515)
.++......+...+..| .+.+++ |++..+.|++.+.+.++..++++++|+++||+|||++++++..+.+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~----------g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~ 87 (420)
T PRK09528 18 FFFFFFFIWSSWFSFFPIWLHDIN----------GLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLL 87 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 33334444444445544 455568 9999999999999999999999999999999999999888766655
Q ss_pred HHHHHhh---hcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 110 ICSLASG---LSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 110 i~~~~~~---~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
++..... .++.. ....+...++++++.|.+.....+....+..+ . .+++++.++......++|..+++.+++.+
T Consensus 88 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~g~~~g~~~~~~~~g~~i~~~~~g~l 164 (420)
T PRK09528 88 VLFGPFFIYVFAPLL-QYNILLGAIVGGIYLGFGFLAGAGAIEAYIER-V-SRRSGFEYGRARMWGSLGWALCAFIAGIL 164 (420)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhccchhhhhhHHHH-H-HhhccccchhhHHhhhHHHHHHHHHHHHH
Confidence 4433221 11110 00001223344444554443333444343322 2 24567788888889999999999999988
Q ss_pred HHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcC-CchhhHHHHhccHHHHHHHHHHHHHhhh
Q 010194 187 SAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMP-ETARYTALVAKNAKQAAADMSKVLQVEL 265 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~-e~p~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
.+ .+|++.|++.++..++..+..++.+ |+++. ...++ ++. +
T Consensus 165 ~~------------------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~-~---------- 206 (420)
T PRK09528 165 FN------------------------INPQINFWLGSGSALILLVLLFFAKPDAPST--AKVAN-ALG-A---------- 206 (420)
T ss_pred Hh------------------------cCchHhHHHHHHHHHHHHHHHhcccccccch--hhhcc-chh-c----------
Confidence 42 2499999987777766555554443 33221 00000 000 0
Q ss_pred hHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHH
Q 010194 266 EAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARA 345 (515)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (515)
+.++.+.++.++.++++.. +.+ .+........+.....+.|.++.+..... .. + ....+ .
T Consensus 207 -----~~~~~~~~~~~~~l~~~~~----~~l---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~----~~~~g-~ 266 (420)
T PRK09528 207 -----NASAVSLKDALALLKLPKF----WFL---VLYVIGVACFYDVFDQQFPNFFASFFATP-EQ--G----TRVFG-Y 266 (420)
T ss_pred -----ccccccHHHHHHHccCCCe----Eee---hHHHHHHHHHHHHHHHHHHHHHHHHHhcc-Cc--c----hHHHH-H
Confidence 0000000001111222111 111 11111111122222223344433321000 00 0 00111 1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......+..+++.++.|++.||+|+|+.+..+..+..+..+++.+.. +.+. ++...+..+.......+....
T Consensus 267 ~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~-------~~~~-~~~~~~l~g~~~~~~~~~~~~ 338 (420)
T PRK09528 267 LNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFAT-------GPLE-VSILKLLHAFEVPFLLVGVFK 338 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhcc-------cHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 34444556678888999999999999998888877777666655432 2222 222222222222222233446
Q ss_pred cccccCchhhhhhhhHH-HHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 426 VPAEIFPARLRSTCHGI-SAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+..|.+|++.+++..+. .++...+|.+++|.+.|.+.|..||+..|...+++.++..++.+
T Consensus 339 ~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~ 400 (420)
T PRK09528 339 YITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISV 400 (420)
T ss_pred HHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHH
Confidence 77888899999888766 67778899999999999999999999999988888777666555
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.5e-27 Score=223.89 Aligned_cols=332 Identities=14% Similarity=0.109 Sum_probs=232.9
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcC
Q 010194 40 FCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSF 119 (515)
Q Consensus 40 ~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 119 (515)
..+++.+|.+.+++ |.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+.+ .++
T Consensus 17 ~~~~~~lp~l~~~~----------~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~ 85 (355)
T TIGR00896 17 TSVGPLLPQIRSAL----------GMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAP 85 (355)
T ss_pred ccCcccHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-Hhc
Confidence 55678999999999 9999999999999999999999999999999999999999999988888877 666
Q ss_pred CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 010194 120 GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIY 199 (515)
Q Consensus 120 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~ 199 (515)
+ ++.+++.|++.|++.+...+....++.|++| ++|++++++.+.+.++|..+++.+++.+.+..+
T Consensus 86 ~------~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~-------- 150 (355)
T TIGR00896 86 G------TALLFAGTALIGVGIAIINVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG-------- 150 (355)
T ss_pred c------HHHHHHHHHHHHHHHHHHhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--------
Confidence 6 7889999999999999888888889999986 579999999999999999999999888753321
Q ss_pred CCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCC
Q 010194 200 SANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKN 279 (515)
Q Consensus 200 ~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (515)
.+||+.|.+.++..++... .++||.++. ++ ++ ++.++..
T Consensus 151 -------------~~w~~~f~~~~~~~~~~~~--~~~~~~~~~-----~~-~~--------------------~~~~~~~ 189 (355)
T TIGR00896 151 -------------GHWQQALAWWALPALLALL--AWIPQVRRR-----VA-AN--------------------QTTTRLT 189 (355)
T ss_pred -------------hhHHHHHHHHHHHHHHHHH--HHhhhhccc-----cC-CC--------------------CCCCCCC
Confidence 2399998876554433322 234443211 00 00 0000011
Q ss_pred cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHH
Q 010194 280 DFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYW 359 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (515)
.++.++++. .+......++....++....+.|.++++.++++... ........++.+++++
T Consensus 190 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~------------g~~~~~~~~~~i~~~~ 250 (355)
T TIGR00896 190 PVRIWRSPL-------AWQVTVFFGLQSGLYYSLIGWLPAILISHGASAATA------------GSLLALMQLAQAASAL 250 (355)
T ss_pred CchhhcCHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------------HHHHHHHHHHHHHHHH
Confidence 222333221 222233333444556666778888888766654432 2256667788889999
Q ss_pred HHHHHHHhh-chhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccccc-Cchhhhh
Q 010194 360 FTVALIDKI-GRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEI-FPARLRS 437 (515)
Q Consensus 360 ~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~ 437 (515)
+.|++.||+ +||+.+..+..+..++.+.+.... ...... ..+..++......+...+...+. .+++.++
T Consensus 251 ~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~--~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g 321 (355)
T TIGR00896 251 LIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAP-------MHGLWA--WALVLGLGQGGAFPLALTLIGLRSRQAAQAA 321 (355)
T ss_pred hHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhh-------hhHHHH--HHHHHHHhhhhHhHHHHHHHHHhccCHHHHH
Confidence 999999999 456666666666666655554332 111111 12223333333344544444443 4467789
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHhhhccC
Q 010194 438 TCHGISAASGKAGAIVGAFGFLYLADTSG 466 (515)
Q Consensus 438 ~~~g~~~~~~~~g~~i~~~~~~~l~~~~g 466 (515)
...++.+...+++..++|.+.|.+.|..|
T Consensus 322 ~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 322 ALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998766
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=221.44 Aligned_cols=379 Identities=14% Similarity=0.059 Sum_probs=245.0
Q ss_pred HHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhh-HHH
Q 010194 29 GMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM-----GRKR-VYG 102 (515)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~-~l~ 102 (515)
...++.++.........+|...++. |.|.+++|++..+... .+..+++|+++||+ |||| .+.
T Consensus 5 ~~l~~~~~~~~~~~~~~~~~~l~~~----------g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~ 72 (402)
T PRK11902 5 LLLGFASGLPLALTSGTLQAWMTVE----------GLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLL 72 (402)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHH
Confidence 3456777888888888999999998 9999999999777776 69999999999999 8876 688
Q ss_pred HHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 010194 103 MTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182 (515)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l 182 (515)
++.++.+++..+.++.+... .++.+++..++.++..+...+...+++.|++|+++|+++.++...+..+|.++++.+
T Consensus 73 ~~~~~~~l~~~~l~~~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l 149 (402)
T PRK11902 73 LTQVGLAASIAAMAFCPPHA---ALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGL 149 (402)
T ss_pred HHHHHHHHHHHHHHhcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHH
Confidence 88888888888877774311 167788888888888888889999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHH
Q 010194 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQ 262 (515)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
+..+.+. ..|||..|++.++..++..+..++.||+++. .+++ ++..+.
T Consensus 150 ~~~l~~~----------------------~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~--~~~~--~~~~~~------ 197 (402)
T PRK11902 150 ALWLADR----------------------VLGWGNTYLLMAGLMLAGALTTLWAPEPEVP--ARPP--RSLGEA------ 197 (402)
T ss_pred HHHHHhc----------------------ccCHHHHHHHHHHHHHHHHHHHHhcCCCccc--cccc--chhHHH------
Confidence 8887521 2469999999777666655555667776542 1100 000000
Q ss_pred hhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHH
Q 010194 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKI 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
..+..++.++++.. +..+...+.........+ ....+.+.++.|+++.. .
T Consensus 198 -------------~~~~~~~l~~~~~~----~~~l~~~~l~~~~~~~~~--~~~~~~l~~~~G~~~~~-----------~ 247 (402)
T PRK11902 198 -------------VVGPLRDFFSRRGA----WALLLLIVLYKLGDAFAG--SLSTTFLIRGAGFSAGE-----------V 247 (402)
T ss_pred -------------HHHHHHHHHhCcCH----HHHHHHHHHHHhHHHHHH--HHHHHHHHHhcCCCHHH-----------H
Confidence 00011112222221 112221111111111111 12223344445655433 2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHH---HHHHHhhcCc
Q 010194 343 ARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYS---LTFFFSNFGP 419 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 419 (515)
+........++.+++.++++++.||+++|+.+..+..+..+..+.+...... +++.+....... +..+......
T Consensus 248 g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~~~~ 324 (402)
T PRK11902 248 GIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT---PKHLWTMALAIGIENLCGGMGTAAF 324 (402)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223333445678888999999999999988776666655544333221110 011222222111 1222223333
Q ss_pred cccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcccc
Q 010194 420 NTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 420 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
.+....++.+.+|.+.+ ++.+....++..+++.+.|.+.|..||+..|.+.+++++++.++....+++
T Consensus 325 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~~~~~~~ 392 (402)
T PRK11902 325 VALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALLWLMRGT 392 (402)
T ss_pred HHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556677777775544 555555667777677789999999999999998888888877666544433
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.4e-28 Score=213.50 Aligned_cols=364 Identities=15% Similarity=0.099 Sum_probs=212.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+....|.+.+.|.++..+.++.+|.++||+|||+++++|++..++..++.+++.+ |..+.++|++.|+..|.
T Consensus 64 ~~~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~------F~afv~aR~l~Gi~kgn 137 (451)
T KOG2615|consen 64 GASVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRN------FAAFVLARFLGGIFKGN 137 (451)
T ss_pred cccchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhhhhccCc
Confidence 456778899999999999999999999999999999999999999999999999999 87777779999998775
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhH
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGA 223 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~ 223 (515)
..+..++++|.+++|+|+++++.++...++|.++||.+|+++...... ...+..-.+-++..
T Consensus 138 -l~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~-----------------~g~~p~alP~~~v~ 199 (451)
T KOG2615|consen 138 -LSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSI-----------------SGSYPFALPCLLVF 199 (451)
T ss_pred -hHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhh-----------------hccCchHHHHHHHH
Confidence 689999999999999999999999999999999999999999862210 11111222233333
Q ss_pred HHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHH
Q 010194 224 IPALL-TYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVT 302 (515)
Q Consensus 224 ~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (515)
+.+.. .....+++||+-+. +++. ++...+.+..+++ .+..+.+ ....-...+++..+..........+-
T Consensus 200 i~a~~~v~~~~~~lpETL~~---rk~~--~~~~~~~~~~~~~--~~~~~~~---~~~~v~~lrn~p~~~~i~~~~i~~l~ 269 (451)
T KOG2615|consen 200 ILAAGDVTFFPWFLPETLPL---RKRN--DEHSTLQEAADDR--LALLKFA---RIFKVAALRNPPLLDFISVLRIFGLH 269 (451)
T ss_pred HHHHHHHHHHHHhCCccccc---hhhc--ccccchhhhhhhh--hhhcchh---hhhhhhhhcCccccchHHHHHHHHHH
Confidence 33333 44566789998433 1111 1111111111000 0000000 00000011111111100111111122
Q ss_pred HHHHHHHHHHHhhhhhHHH-hHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc--hhhHHHHHHH
Q 010194 303 WFLLDVAYYSQNLFQKDIF-TAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIG--RFAIQLMGFF 379 (515)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~~~~ 379 (515)
.+.....+.....+.+.+. +..|+++.+.+. .....++...+.........||.+ .+-.+..+..
T Consensus 270 ~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~------------vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~ 337 (451)
T KOG2615|consen 270 YFLYLELFSGLENTVLFLTHGRFGYSSMQQGK------------VLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLL 337 (451)
T ss_pred HHHHHHHHHHHHhhHHHhhcCccCCChhhhee------------eeehhhHHHHHHHHhccccccccccchhhHHHHHHH
Confidence 2222222222222222221 346677666443 222222222222222233333333 2223333333
Q ss_pred HHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 010194 380 FMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFL 459 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 459 (515)
++.-..+++.... ....+.....+..+......+....++....|.++||+.+|+....+.++.++||.+.|
T Consensus 338 ~~vP~~llls~~~--------~~~~l~~~s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g 409 (451)
T KOG2615|consen 338 LIVPAFLLLSLAR--------TPVVLYLGSTLKSFSTASVVTCLTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSG 409 (451)
T ss_pred HHHHHHHHHhccc--------cchhhhHHHHHHHHHHHHhhHHHHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333333322221 12233333333334444344556677888999999999999999999999999999999
Q ss_pred Hhhhc-cCchHHHHHHHHHHHHH
Q 010194 460 YLADT-SGVKKALLILGGANFLG 481 (515)
Q Consensus 460 ~l~~~-~g~~~~~~~~~~~~~~~ 481 (515)
.+... .+-+.++...+.+.++.
T Consensus 410 ~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 410 VIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred eeEEEecCCCceeeehHHHHHHH
Confidence 88752 23334444444444444
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=5e-26 Score=222.49 Aligned_cols=376 Identities=14% Similarity=0.073 Sum_probs=259.8
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMM 107 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 107 (515)
++++.+...+...+.....+.+..+. .-|+...+++..+..+...+.++++|.++||++|||+++.+.++
T Consensus 15 lw~a~~iS~lG~~~~~va~~wlv~~l----------t~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~ 84 (524)
T PF05977_consen 15 LWIAQLISNLGDWMQTVALAWLVTQL----------TGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLL 84 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------hCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH
Confidence 34455555555555666777777777 78899999999999999999999999999999999999999988
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
..+..+..++....+. .+.+.+++.-++.|++.+...|+.++++.|..|+++...+.++.+...++..++||.++|.+.
T Consensus 85 ~~~~~~~L~~l~~~~~-~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lv 163 (524)
T PF05977_consen 85 RALVALLLAVLAFFGL-LSPWLLLILTFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILV 163 (524)
T ss_pred HHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 8766555443211111 116889999999999999999999999999999999999999999999999999999999997
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhH
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEA 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
...+ -.+.|++.++..++.+......+..++. ++..++.-.+
T Consensus 164 a~~G-----------------------~~~~f~inalsfl~~i~~l~~~~~~~~~---~~~~~e~~~~------------ 205 (524)
T PF05977_consen 164 AFFG-----------------------AAAAFLINALSFLISILALLRWKPPPPP---SSLPRERFFS------------ 205 (524)
T ss_pred HHHH-----------------------HHHHHHHHHHHHHHHHHHHHHccccccc---cccchhhhhh------------
Confidence 6554 6778888666555544444334332111 0000000000
Q ss_pred hhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHH
Q 010194 268 EQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQ 346 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 346 (515)
..++-++.....+..+..+.....+. .........+|.+.++ .+..+...+. .
T Consensus 206 -----------~l~~G~ryv~~~~~l~~~l~~~~~~~---l~~~a~~aLlPl~a~~~l~~~a~~yGl------------l 259 (524)
T PF05977_consen 206 -----------ALREGLRYVRSSPPLRSVLLRSFLFN---LFASAVWALLPLFARDVLGGGASGYGL------------L 259 (524)
T ss_pred -----------hHHHHHHHHhcchHHHHHHHHHHHHH---HhhhHHHHhhhHHHHHHhCCcHHHHHH------------H
Confidence 01111111111111112222222222 2222233345666544 4444333222 6
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccc
Q 010194 347 TLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVV 426 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (515)
....+++.++|.++.+++.+|+++++.+..+.++.+++++.+++.. +.+......+..+.+.........+.
T Consensus 260 ~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~--------~~~~~~~~l~l~G~~~~~~~~~~~t~ 331 (524)
T PF05977_consen 260 LAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSP--------SFWLALIALFLAGAAWIIANSSLNTL 331 (524)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcch--------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888999999999999999988888888888777777766543 22233333333444444445556678
Q ss_pred ccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 427 PAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 427 ~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
.++..|++.||++++++.+....+..+|..+.|.+.+..|...++.+.++..+++.++..
T Consensus 332 ~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~ 391 (524)
T PF05977_consen 332 VQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL 391 (524)
T ss_pred HHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999888877776666666555
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.9e-26 Score=217.11 Aligned_cols=356 Identities=9% Similarity=0.001 Sum_probs=229.8
Q ss_pred HHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh----hHHHHHHHH
Q 010194 32 FFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRK----RVYGMTLMM 107 (515)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr----~~l~~~~~~ 107 (515)
++..........|.+|.+.+++ +.|.++.|++.+++.++..++++++|+++||+||| +.+.+...+
T Consensus 13 ~~~~~~~~g~~~p~l~~~l~~~----------g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~ 82 (382)
T PRK11128 13 YFGYFFAYGVFLPFWSVWLKGQ----------GYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL 82 (382)
T ss_pred HHHHHHHHHHHhhhHHHHHHhc----------CCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 4444555677788889999999 99999999999999999999999999999999984 333322222
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
. ........++ ++.+++.|++.|++.+...+...+++.++ +++|+++.+......++|.++||++++.+.
T Consensus 83 ~--~~~~~~~~~~------~~~l~i~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~ 152 (382)
T PRK11128 83 F--AVAFWFGAHS------FWLLFVAIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLV 152 (382)
T ss_pred H--HHHHHHhccc------HHHHHHHHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222333455 89999999999999888889888888876 355788888888899999999999999996
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhH
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEA 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+ ..|||..|++.++..++..+..++.||+++. +++++.
T Consensus 153 ~-----------------------~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~-------------- 190 (382)
T PRK11128 153 S-----------------------WFGEQAILWILTAGVASMLLGQLLRPTIMPQ-----GESRQQ-------------- 190 (382)
T ss_pred H-----------------------HcChhHHHHHHHHHHHHHHHHHHccCCCCCc-----cccccc--------------
Confidence 4 3459999988666554444444445553221 000000
Q ss_pred hhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHH
Q 010194 268 EQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQT 347 (515)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
.++...+.++.++++ .++......+...........+.+.+.++.|+++... +. ..
T Consensus 191 -----~~~~~~~~~~i~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~s~~~~-----------g~-~~ 246 (382)
T PRK11128 191 -----ESAGWPAWKALLKEP-------TVWRFLLCVSLLQGSHAAYYGFSAIYWQAAGYSASTI-----------GY-LW 246 (382)
T ss_pred -----cccccchHHHHHcCh-------hHHHHHHHHHHHHHHhHhHHHHHHHHHHHCCCCHhHH-----------HH-HH
Confidence 000011122222222 1222222222222333344445566666666554332 22 33
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccc
Q 010194 348 LIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVP 427 (515)
Q Consensus 348 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (515)
....+..++..++.+++.||+++|+.+..+....+++.+++.... +.+ .+....++.+.......+....+.
T Consensus 247 ~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~~ 318 (382)
T PRK11128 247 SLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTT-------ALP-WLIVIQILHCGTFTVCHLAAMRYI 318 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhh-------hHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667788888999999999999998888887777665554322 222 222223322322222244455666
Q ss_pred cccCchhhhhhhhHHHH-HHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHH
Q 010194 428 AEIFPARLRSTCHGISA-ASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGML 483 (515)
Q Consensus 428 ~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~ 483 (515)
.+. +++++++..++.+ .....|..++|.+.|.+.|..|+ ..++..+++.+++.+
T Consensus 319 ~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 319 AAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALPALF 373 (382)
T ss_pred HHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHH
Confidence 665 5566788888887 44566779999999999998887 456656655555443
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-25 Score=218.94 Aligned_cols=411 Identities=10% Similarity=0.031 Sum_probs=248.1
Q ss_pred HHHHHHHhHHHHHHhhhHHH-HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHH
Q 010194 24 AIVIAGMGFFTDAYDLFCIS-LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVY 101 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l 101 (515)
.+..+++..+...+..+... .+...+.+++ |.+.++.+++.+.+.....+..+++|+++|| +||||++
T Consensus 15 ~~~~~~~~~~~er~~~y~~~~~l~~yl~~~l----------g~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~ 84 (489)
T PRK10207 15 PFFMIFFVELWERFGYYGVQGILAVFFVKQL----------GFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTI 84 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHH
Confidence 34444444444444444443 4556667788 9999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccc--cchhHHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKK--TRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~g 179 (515)
+.+.+++++++++++++.+. ...++++|.++|+|.|...+...+++.|.+|++ +|++++++++.+.++|.++|
T Consensus 85 ~~g~~~~~~g~~~~~~~~~~-----~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g 159 (489)
T PRK10207 85 VLGAIVLAIGYFMTGMSLLK-----PDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLIS 159 (489)
T ss_pred HHHHHHHHHHHHHHHHhccc-----hhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHH
Confidence 99999999999999998762 234568999999999999999999999999877 45778999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHh-ccHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVA-KNAKQAAADMS 258 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~-~~~~~~~~~~~ 258 (515)
|.+++++.+ ..|||+.|++.++..++.++.+.+.++..+....+. +++.+......
T Consensus 160 ~~l~g~l~~-----------------------~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l 216 (489)
T PRK10207 160 LSLAPVIAD-----------------------KFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLL 216 (489)
T ss_pred HHHHHHHHH-----------------------hhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHH
Confidence 999999964 346999999865544444433333332211100000 00011000000
Q ss_pred H-------HHH----hhhhHhhhh-------------HHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 010194 259 K-------VLQ----VELEAEQEK-------------VEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQN 314 (515)
Q Consensus 259 ~-------~~~----~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (515)
- ... .+....... ..++.+. .+.+|++.. ....+.+........+....
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~~~--~~~~r~r~~-----~~~~l~~~~~~f~~~~~q~~ 289 (489)
T PRK10207 217 VLLGSVVMIFVCAWLMHNVEVANLVLIVLSIVVTIIFFREAFKL--DKTGRNKMF-----VAFVLMLEAVVFYILYAQMP 289 (489)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHH-----HHHHHHHHHHHHHHHHHHcc
Confidence 0 000 000000000 0001111 122222211 11111111222222333333
Q ss_pred hhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhh-------HHHHHHHHHHHHHH
Q 010194 315 LFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFA-------IQLMGFFFMTVFMF 386 (515)
Q Consensus 315 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~ 386 (515)
...+.+.++ .+. ...+.... .........+..++..++.+++.||+++|+ .+.++.++.+++++
T Consensus 290 ~~l~l~~~~~~~~--~~~G~~i~------~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~ 361 (489)
T PRK10207 290 TSLNFFAINNVHH--EILGFSIN------PVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFL 361 (489)
T ss_pred cHHHHHHHHhccc--cccceEEC------HHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHH
Confidence 444444442 211 11111100 001222333445556667789999999886 36677777777765
Q ss_pred HHHhhhh--cccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh-
Q 010194 387 ALAIPYH--HWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD- 463 (515)
Q Consensus 387 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~- 463 (515)
.+..... .......+.++.+...++.+.+.....+...+++.+..|++.++.++|+.+...++|+.++..+......
T Consensus 362 ~~~~~~~~~~~~~~~~s~~~~i~~~~l~g~Ge~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~ 441 (489)
T PRK10207 362 TAAAAGMWFADAQGLTSPWFIVLVYLFQSLGELFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVP 441 (489)
T ss_pred HHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4432111 1111122334444555555666666778888888999999999999999999999999999888765521
Q ss_pred ---------ccCchHHHHHHHHHHHHHHHHHHh
Q 010194 464 ---------TSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 464 ---------~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
...+...|...++..+++.++.+.
T Consensus 442 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~ 474 (489)
T PRK10207 442 DNITDPLETLPVYTNVFGKIGLVTLGVAVVMAL 474 (489)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 112456666666666666655553
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-24 Score=213.00 Aligned_cols=410 Identities=11% Similarity=0.045 Sum_probs=251.0
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhhh-hhh--hhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKLL-GRI--YYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVY 101 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i-~~~--~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l 101 (515)
..+.+..+.+.+..+...+.+|.. .++ + |.+..+.+++.+.+.++..++++++|+++|| +|||+++
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~l----------g~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l 82 (475)
T TIGR00924 13 FTLFFVELWERFSYYGMQGILAVYLVQQAGL----------GFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTM 82 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------CCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHH
Confidence 333444555555555555555554 444 6 8999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccccc---chhHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKT---RGAFIAAVFAMQGFGILS 178 (515)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~---r~~~~~~~~~~~~~G~~~ 178 (515)
.++.++.+++.++.+++++ ++.++++|++.|++.|...+...++++|++|+++ |+++.++++.+.++|.++
T Consensus 83 ~~~~~~~~~g~~~~~~~~~------~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~i 156 (475)
T TIGR00924 83 VLGGIVLMLGHFMLAMSIY------PDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFI 156 (475)
T ss_pred HHHHHHHHHHHHHHHhccc------HhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHH
Confidence 9999999999999999887 6888999999999999999999999999998764 888999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcC----CchhhHHHHhccHHHHH
Q 010194 179 GGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMP----ETARYTALVAKNAKQAA 254 (515)
Q Consensus 179 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e~p~~~~~~~~~~~~~~ 254 (515)
||.+++.+. +..|||+.|.+.++..++..+.+.+.+ +.|+.....++++++..
T Consensus 157 g~~l~g~l~-----------------------~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (475)
T TIGR00924 157 SPLLAGVIA-----------------------ENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVPDPLSGQGKTYG 213 (475)
T ss_pred HHHHHHHHH-----------------------HhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCCCCcchhhhhhH
Confidence 999999985 335699999997765555444443333 22211000000000000
Q ss_pred HHHHH------------HHHhhhhHhhh-----------h-HHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 010194 255 ADMSK------------VLQVELEAEQE-----------K-VEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAY 310 (515)
Q Consensus 255 ~~~~~------------~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
+.... ....+...... . .+...+++..+ ...++. ..++.+..........+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~l~l~~~~~~~~~~~ 288 (475)
T TIGR00924 214 KLLLALLAALALVFFCAWLMHHVVIANILLMTVTLAVIIFFFRLAFKPRLDA----VARNKM-YAYIVLFLEAVVFWVLY 288 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhccCCH----HHHhHH-HHHHHHHHHHHHHHHHH
Confidence 00000 00000000000 0 00000000000 001111 11222222222222233
Q ss_pred HHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhch-----hhHH--HHHHHHHH
Q 010194 311 YSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGR-----FAIQ--LMGFFFMT 382 (515)
Q Consensus 311 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-----~~~~--~~~~~~~~ 382 (515)
.......+.+.++ .+......+.. .+. ......+..++..++..++..|.+| +... .++.++.+
T Consensus 289 ~Q~~s~l~l~~~~~~~~~~~~~~ip-------~~~-~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~ 360 (475)
T TIGR00924 289 AQMPTSLNFFADNNMHHEMLGMSVP-------VIW-FQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCG 360 (475)
T ss_pred HHhhhHHHHHHHHhccccccceEEC-------HHH-HHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 3333333333322 11111111110 111 2233333333333333333333332 2333 66777777
Q ss_pred HHHHHHHhhhhcccC-CCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHh
Q 010194 383 VFMFALAIPYHHWTL-PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYL 461 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l 461 (515)
+++..+.+....... ...+.++.+...++.+.+.....|...++..+..|++.||+++|+......+|..+++.+....
T Consensus 361 ~~~~~~~~~~~~~~~~~~~s~~~~i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~ 440 (475)
T TIGR00924 361 ASFLTFAASIWFADAGGLTSPWFMVLIYLFQTLGELMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFG 440 (475)
T ss_pred HHHHHHHHHHhhcCCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666543211111 1234555566666666777777899999999999999999999999999999999999998888
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 462 ADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 462 ~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
.+..++...+...++++++..+..++
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (475)
T TIGR00924 441 AVPQGVTGVFGKIGLVTLLVGVVMAL 466 (475)
T ss_pred hcccchhhHHHHHHHHHHHHHHHHHH
Confidence 77777877787777777766666553
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=246.35 Aligned_cols=368 Identities=14% Similarity=0.001 Sum_probs=232.0
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCC--chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhh
Q 010194 40 FCISLVTKLLGRIYYYKEGSDSPGTL--PDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGL 117 (515)
Q Consensus 40 ~~~~~~~~~i~~~~~~~~~~~~~~~~--s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~ 117 (515)
.....+.+.+..++ +. +....+++.+++.+++.++++++|+++||+|||++++.+.++..++.++..+
T Consensus 27 ~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~ 96 (1146)
T PRK08633 27 GHKILIQNTLIKAY----------DGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVL 96 (1146)
T ss_pred HHHHHHHHHHHHHc----------CcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555 33 3455799999999999999999999999999999999988776666555443
Q ss_pred ---cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 010194 118 ---SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANF 194 (515)
Q Consensus 118 ---~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 194 (515)
+.+ ++.++++|+++|++.+...++..+++.|++|+++|++++++...+..+|.++|+++++++........
T Consensus 97 ~~~~~~------~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~ 170 (1146)
T PRK08633 97 AYYLGW------FWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNT 170 (1146)
T ss_pred HHHHcc------HHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 455 89999999999999999999999999999999999999999999999999999999999875421000
Q ss_pred CCCccCCCCCCccccCCCchHHHHHHH-hHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHH
Q 010194 195 PAPIYSANPAASTVPEADYIWRIILMF-GAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVE 273 (515)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~wr~~f~~-~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
.....+|++.+.+ .....++.++..+.+||+|+.. ..+.+++......
T Consensus 171 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--------------- 219 (1146)
T PRK08633 171 --------------PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAA--PEVFDKKKYLFPK--------------- 219 (1146)
T ss_pred --------------ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCC--cccccccccccHH---------------
Confidence 0011224444444 3333344455556678876541 1110000000000
Q ss_pred HhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCC-cccchhHHHHHHHHHHHHHHHH
Q 010194 274 QEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPK-AKTMNAIEEVYKIARAQTLIAL 351 (515)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 351 (515)
+.....+..++++ .++...+..++.....+....+.|.++.+ .++++. . .........
T Consensus 220 -~~~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~------------~g~~~~~~~ 279 (1146)
T PRK08633 220 -LLWRNLKLLRSDR-------VLWLAIIGLSYFWFISQLAQANFPAYAKEVLGLDNTFQ------------VQYLLAASA 279 (1146)
T ss_pred -HHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCcHHH------------HHHHHHHHH
Confidence 0000011111111 11112222222222333334445555543 455443 2 222556667
Q ss_pred hhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccC
Q 010194 352 CSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIF 431 (515)
Q Consensus 352 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (515)
++.+++.++.+++.||+++++.+.++.++.+++.+++.... ......+..++.+++.....+...+++.+..
T Consensus 280 ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 351 (1146)
T PRK08633 280 IGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAP--------SLASVLVLFFLFGFSAGLFIVPLNALIQFRA 351 (1146)
T ss_pred HHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHHHHHHhhHHHHHHHhhcC
Confidence 78888999999999999998888777777766665554432 2222222333333333333455667888999
Q ss_pred chhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh-ccCchHHHHHHHHHHHHHH
Q 010194 432 PARLRSTCHGISAASGKAGAIVGAFGFLYLAD-TSGVKKALLILGGANFLGM 482 (515)
Q Consensus 432 p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~ 482 (515)
|++.||+++|+.+++.+++..+++.+.+.+.. ..++...+++.+.+.++..
T Consensus 352 p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 403 (1146)
T PRK08633 352 PEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGT 403 (1146)
T ss_pred CccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888877766543 2234444555444444333
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=220.04 Aligned_cols=350 Identities=13% Similarity=0.088 Sum_probs=227.3
Q ss_pred HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhh-HHHHHHHHHHHHHHHhhhc
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK----MGRKR-VYGMTLMMMVICSLASGLS 118 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~ 118 (515)
...+.+.+++ |+++.+.|++.++..+..++..++.|+++|| +|||| .++.+....+++.+++.+.
T Consensus 21 ~l~~~~~~~~----------g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~ 90 (437)
T TIGR00792 21 YLLFFYTDVL----------GLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT 90 (437)
T ss_pred HHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC
Confidence 3556667778 9999999999999999999999999999997 68755 5778888888888888777
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010194 119 FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAP 197 (515)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~ 197 (515)
++......+..+++.+++.+++.+...+...++..|.. ++++|++..++.+.+..+|..+++.+.+.+....+.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~----- 165 (437)
T TIGR00792 91 PDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGG----- 165 (437)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----
Confidence 65322222567788889999988888888888999987 578899999999999999998888887776544331
Q ss_pred ccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhh
Q 010194 198 IYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEK 276 (515)
Q Consensus 198 ~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (515)
..+..+||+.+++.++++++..+ ..+..||+++.. . .+ + ++
T Consensus 166 -----------~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~~--~-~~-~-----------------------~~ 207 (437)
T TIGR00792 166 -----------GDDKFGWFMFALVLALIGVVSLIICFFGTKERYSEI--P-KN-I-----------------------EK 207 (437)
T ss_pred -----------CcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCCC--C-cc-c-----------------------cc
Confidence 02356899999987777666544 345567654210 0 00 0 00
Q ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhh
Q 010194 277 GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVP 356 (515)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (515)
+.+.++.++....++. ++......+......+....+.+.+.+. .... . ...+ .......++.++
T Consensus 208 ~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~----~~~~-~~~~~~~i~~ii 272 (437)
T TIGR00792 208 KLSLKQIFKALFKNDQ---LLILCLAYLFYNLAFNIKNGVQVYYFTY-VLGD------P----ELFS-YMGSIAIVAGLI 272 (437)
T ss_pred CCCHHHHHHHHhCCHH---HHHHHHHHHHHHHHHHHHcchhheeEee-ecCC------h----HHHH-HHHHHHHHHHHH
Confidence 0111222222221221 2222222222222333332233333221 1110 0 0112 234445677888
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCc----
Q 010194 357 GYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFP---- 432 (515)
Q Consensus 357 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 432 (515)
+.++.+++.||+|+|+.+..+..+..++.+.+.+.. .......+..+..++......+..+++..|..+
T Consensus 273 ~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 345 (437)
T TIGR00792 273 GVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAG-------SNLPLILVLIILAGFGQNFVTGLVWALVADTVDYGEW 345 (437)
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 899999999999999998888777776665554321 112222222222333333334566677777754
Q ss_pred ---hhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCch
Q 010194 433 ---ARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVK 468 (515)
Q Consensus 433 ---~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~ 468 (515)
++.+|.+.|+.+....++..+++.+.|.+.+..||.
T Consensus 346 ~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 346 KTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456899999999999999999999999999877763
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-26 Score=211.61 Aligned_cols=175 Identities=11% Similarity=0.081 Sum_probs=150.9
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNV-ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~-~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
+.+|.++++. -.+...+.+.|.+.+++ |+|.++ .|.+.++++.++++++++.|+++||+|.|+++.+
T Consensus 30 ~~lC~fGF~~--e~R~n~s~a~p~L~~el----------glT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l 97 (511)
T TIGR00806 30 LYLCFYGFMA--QFRPGESFITPYLLTVL----------NFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVL 97 (511)
T ss_pred HHHHHHHHHH--HhhchHHHHHHHHHHHc----------CCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 3344444333 34778889999999999 999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
+.+.+++.+++.+++.+ +..+.+.|++.|+++|... +...++..|+|+++|+++.++...+..+|.+++++++
T Consensus 98 ~~l~Wsl~t~L~~fa~S------l~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ 170 (511)
T TIGR00806 98 QALSFVCVWLLLLLGTS------VWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLG 170 (511)
T ss_pred HHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988 8999999999999999998 9999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHH---hHHHHHHHHHHHHhcCCchhh
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMF---GAIPALLTYYWRMKMPETARY 242 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~---~~~~~~~~~~~~~~~~e~p~~ 242 (515)
+++. ..|||+.+.+ ......+++++.+++|..++.
T Consensus 171 qll~------------------------s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~s 208 (511)
T TIGR00806 171 QLLV------------------------TLGWISYSTLNIISLVFMTFSVFLALFLKRPKRS 208 (511)
T ss_pred HHHH------------------------hcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchh
Confidence 9852 2458876655 333344566777889966554
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=245.95 Aligned_cols=346 Identities=12% Similarity=0.026 Sum_probs=226.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH---HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccc
Q 010194 68 NVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM---TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGD 144 (515)
Q Consensus 68 ~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~---~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 144 (515)
...++..+++.++++++++++|+++||+|||+++.. ..++..+..+.....++ ++.++++|+++|++.+..
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s------~~~l~~~~~l~gi~~a~~ 125 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNS------VPLLFAALFLMGIHSALF 125 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHhh
Confidence 457888999999999999999999999999997533 22233333333333466 899999999999999999
Q ss_pred cchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHH
Q 010194 145 YPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAI 224 (515)
Q Consensus 145 ~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 224 (515)
.|+..+++.|++|+++|++++++.+++.++|.++||++++++.. ..+|++.|+..++
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~-----------------------~~~~~~~~~~~~~ 182 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATI-----------------------SGNFVILVALLMG 182 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999964 3459999966666
Q ss_pred HHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHH
Q 010194 225 PALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWF 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
..++.+++.+++|++++. ..+.+.+.. .... ..+.++....+ +.++...+..+
T Consensus 183 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~--------------------~~~~~~~~~~~---~~~~~~~~~~~ 235 (1140)
T PRK06814 183 IAVLGWLASLFIPKTGNA--APDLKIDRN--IIRS--------------------TITLLKYAKAD---KRIWLAILGIS 235 (1140)
T ss_pred HHHHHHHHHhhCCCCCCC--CCCCeeccc--hHHH--------------------HHHHHHHHhcC---chHHHHHHHHH
Confidence 666666666677776432 000000000 0000 00001111111 12333333333
Q ss_pred HHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHH
Q 010194 305 LLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTV 383 (515)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 383 (515)
...........+.|.++++ .+.++.. .........++.++|.++.+++.|+..+++.+..+.++.++
T Consensus 236 ~~~~~~~~~~~~~p~~~~~~~g~~~~~------------~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 236 WFWLVGAVVLSQLPLLAKETLGGDENV------------ATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL 303 (1140)
T ss_pred HHHHHHHHHHHHhHHHHHHHcCCchHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence 3333444555567777765 4544433 22256677778889999999999887776665555555555
Q ss_pred HHHHHHhhhhc-------------ccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhh
Q 010194 384 FMFALAIPYHH-------------WTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAG 450 (515)
Q Consensus 384 ~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 450 (515)
+.+.+.+.... .....+.+.. .+..++.+++.....+...+++++..|++.+|+++|+.+++..++
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRI-LIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccHHH-HHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 44433332000 0000122222 223333333333344557788899999999999999999999999
Q ss_pred HHHHHHHHHHhhh-ccCchHHHHHHHHHHHHHH
Q 010194 451 AIVGAFGFLYLAD-TSGVKKALLILGGANFLGM 482 (515)
Q Consensus 451 ~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~ 482 (515)
..+++.+.+.+.+ ..++...+++.+++.++..
T Consensus 383 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~ 415 (1140)
T PRK06814 383 MVAGTIILALLQALGFSIPWIILFIALANLIVA 415 (1140)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence 9999999999874 3455555555544433333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-25 Score=214.92 Aligned_cols=379 Identities=15% Similarity=0.070 Sum_probs=228.9
Q ss_pred HHHhHHHHHHhhhHHHHHHhhh-hhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLL-GRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLM 106 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~ 106 (515)
+...++........+.+.+|.. .+++ |.+..+.|++.+.+.++..+++++.|+++||+|||+.++.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~ 76 (396)
T TIGR00882 7 FGLFFFLYFFIMSAYFPFFPIWLHDVN----------GLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIIS 76 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 3334455555555666666654 5567 9999999999999999999999999999999999999988776
Q ss_pred HHHHHHHHh---hhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 107 MMVICSLAS---GLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 107 ~~~i~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
..+++.... .+.+.. ....+..+++.|++.|++.+...+....+..|..+ ++++..+......++|.++|+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~ 153 (396)
T TIGR00882 77 GLLVLFAPFFIYVFGPLL-QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIA 153 (396)
T ss_pred HHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHH
Confidence 665544332 122110 00013456778899999988888888888777543 345566777788899999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHh-cCCchhhHHHHhccHHHHHHHHHHHHH
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMK-MPETARYTALVAKNAKQAAADMSKVLQ 262 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~-~~e~p~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
+.+. +.+||.+|++.++..++..+..+. .||+|+. . ++ +++.+
T Consensus 154 g~l~------------------------~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~~~~------- 197 (396)
T TIGR00882 154 GILF------------------------SIDPQIVFWLGSGFALILMLLLMFAKPKAPSS--A--TV-ANALG------- 197 (396)
T ss_pred hhhh------------------------ccCchHHHHHHHHHHHHHHHHHHHhCCCCchh--h--hh-hcccc-------
Confidence 8773 246999999987777665544444 4444321 0 00 00000
Q ss_pred hhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHH
Q 010194 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKI 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
++.++++.++.++.++++. ++......+.....+.....+.+.++++...... .+. ...
T Consensus 198 -------~~~~~~~~~~~~~~l~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~y~~~~~~~~~---~~~----~~~ 256 (396)
T TIGR00882 198 -------ANASAFSLKLALELFRQRK-------FWMFVLYVVGVACVYDVFDQQFANFFTSFFATPQ---QGT----RVF 256 (396)
T ss_pred -------cccCCCCHHHHHHHHcCCc-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cch----HHH
Confidence 0000000011122222221 1111122222222222233334444444221100 000 011
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccc
Q 010194 343 ARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTT 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (515)
+ .......+..+++.+..+++.||+|+|+.+..+..+.++...+..... +.+.. ....+..+.........
T Consensus 257 g-~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~-------~~~~~-~~~~~l~g~~~~~~~~~ 327 (396)
T TIGR00882 257 G-YVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFAT-------TALEV-VILKMLHAFEVPFLLVG 327 (396)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcC-------ChHHH-HHHHHHHHHHHHHHHHH
Confidence 1 133445556666778899999999999998888777777665544322 22222 22222222222111222
Q ss_pred ccccccccCchhhhhhhhHH-HHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 010194 423 TFVVPAEIFPARLRSTCHGI-SAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFT 485 (515)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~g~-~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 485 (515)
...+..+..|++.++++.+. .+....+|+++++.+.|++.|..|++.+|.+.+++.++..+..
T Consensus 328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33455666777888877766 6788899999999999999999999999999888877766554
|
|
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=229.90 Aligned_cols=408 Identities=13% Similarity=0.121 Sum_probs=293.0
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
...+.|.++...++..+...-....++...+.+++++ +.+.++.+|+.++......+..++.+.+.||+|
T Consensus 40 dGG~gWvV~~a~fl~~~~~~g~~~~~Gv~~~~~~~~f----------~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg 109 (509)
T KOG2504|consen 40 DGGWGWVVVFASFLVNLSTDGLINSFGLLFEELMDYF----------GSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFG 109 (509)
T ss_pred CCCeeeeeeHhHHHHHHhhhcchheehhhHHHHHHHh----------CCCccHHHHHHHHHHHHHHHhccHHHHHHhhcC
Confidence 5567788888888887766666677788899999999 899999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHH
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGI 176 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~ 176 (515)
.|.+.+.|.++..++.++.+++++. +..++..-++.|+|.|..+......+..+|+ |+|+.+.|+...+.++|.
T Consensus 110 ~R~v~i~G~~v~~~g~~lssF~~~i-----~~l~lt~gvi~G~G~~~~~~paiviv~~YF~-kkR~lA~Gia~~GsG~G~ 183 (509)
T KOG2504|consen 110 CRTVMIAGGLVAALGLLLSSFATSL-----WQLYLTFGVIGGLGLGLIYLPAVVILGTYFE-KKRALATGIAVSGTGVGT 183 (509)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhH-----HHHHHHHHHHhhccchhhhcchhhhhhhHhH-HHHHHHHhhhhccCCcce
Confidence 9999999999999999999999993 3455667788999999999999999998886 559999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH-HhcCCchhhHHHHhccHHHHHH
Q 010194 177 LSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR-MKMPETARYTALVAKNAKQAAA 255 (515)
Q Consensus 177 ~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~ 255 (515)
.+-|.+...+. +..|||+.+++.+.+.+-.++.. ..-|.+++.. +. .++..+
T Consensus 184 ~~~~~l~~~l~-----------------------~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~--~~--~~~~~~ 236 (509)
T KOG2504|consen 184 VVFPPLLKYLL-----------------------SKYGWRGALLIFGGISLNVLVAGALLRPLSPPKK--PN--EEKDLR 236 (509)
T ss_pred eeHHHHHHHHH-----------------------HHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCC--ch--hhhhhc
Confidence 99999888886 45669999998666555444433 3334333221 00 000000
Q ss_pred HHHHHH-------Hhhh-------h----HhhhhHHHhhc--C--Ccchhhh---hhhhhhhhHHHHHHHHHHHHHHHHH
Q 010194 256 DMSKVL-------QVEL-------E----AEQEKVEQEKG--K--NDFGLFS---AKFVRRHGLHLIGTTVTWFLLDVAY 310 (515)
Q Consensus 256 ~~~~~~-------~~~~-------~----~~~~~~~~~~~--~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
...... +.+. . .+..+.++.++ . ..+..+. ...++. +.++...+...+....+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~--~~fl~~~~~~~~~~~g~ 314 (509)
T KOG2504|consen 237 NSAASVESTPKPVELRISERDSGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKD--PKFLLLALSNLFAYLGF 314 (509)
T ss_pred cccccccccccccccccccCCCCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcC--chHHHHHHHHHHHHHHH
Confidence 000000 0000 0 00000000000 0 1111111 122222 34566666666677788
Q ss_pred HHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhch--hhHHHHHHHHHHHHHHHH
Q 010194 311 YSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGR--FAIQLMGFFFMTVFMFAL 388 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~~~~~~~~~~~~~~~~~~ 388 (515)
+....++|.+.++.++...+.. .......+..++++++.|++.|+... +....++.++.+++.+.+
T Consensus 315 ~~p~~~l~~~~~~~g~~~~~aa------------~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~ 382 (509)
T KOG2504|consen 315 NVPFVYLPSYAKSLGLSSNDAA------------FLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFL 382 (509)
T ss_pred HHHHHHHHHHHhhcCCChhhhH------------HHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHH
Confidence 8888999999888887766533 37778888999999999999999874 344445555555554333
Q ss_pred HhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-c
Q 010194 389 AIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-V 467 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~ 467 (515)
.... .+..+...++..++...........++.|+.+.+.-..+.|+...+..++..+||.+.|.+.|..| |
T Consensus 383 p~~~--------~~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y 454 (509)
T KOG2504|consen 383 PFAT--------TYVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNY 454 (509)
T ss_pred HHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCe
Confidence 3322 334455555555555444455555678999999999999999999999999999999999999888 9
Q ss_pred hHHHHHHHHHHHHHHHHHHhcc
Q 010194 468 KKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
...|+..+++.+++.++++..+
T Consensus 455 ~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 455 DHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred eeehhhcChHHHHHHHHHHHhH
Confidence 9999999999999988877655
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-25 Score=212.53 Aligned_cols=341 Identities=11% Similarity=0.022 Sum_probs=225.0
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-----hhhhH-HHHHHHHHHHHHH
Q 010194 40 FCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM-----GRKRV-YGMTLMMMVICSL 113 (515)
Q Consensus 40 ~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-----Grr~~-l~~~~~~~~i~~~ 113 (515)
...++..|.+.+|+ |+|.++.|+.... .+...+ .+++|+++||+ ||||. ++.+.++.++..+
T Consensus 5 ~~~~~~~~~~~~~~----------g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~ 72 (356)
T TIGR00901 5 GLVGNTLPYWLRSK----------NVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLL 72 (356)
T ss_pred hhHHhHHHHHHHHc----------CCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHH
Confidence 45678899999999 9999999999755 555555 99999999998 89887 5677888888877
Q ss_pred HhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 010194 114 ASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKAN 193 (515)
Q Consensus 114 ~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 193 (515)
..++.++.. .++.+....++.+++.+...+...+++.|++|+|+|+++.++...+..+|.++++.+++.+....+.
T Consensus 73 ~l~~~~~~~---~l~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~- 148 (356)
T TIGR00901 73 ILSFLVPST---DLPLLAGLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFA- 148 (356)
T ss_pred HHHcCCcch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhccc-
Confidence 777775421 1567778888889888888899999999999999999999999999999999999999888654331
Q ss_pred CCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHH-hcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhH
Q 010194 194 FPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRM-KMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKV 272 (515)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~-~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (515)
....+++||..|++.++..++..+..+ ..||+++. ++.+ ++..+.
T Consensus 149 --------------~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~-~~~~~~---------------- 194 (356)
T TIGR00901 149 --------------NTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVP-KPLTQA---------------- 194 (356)
T ss_pred --------------ccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccc-hhHHHH----------------
Confidence 012356799999998877766555544 35664321 0000 000000
Q ss_pred HHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHh
Q 010194 273 EQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALC 352 (515)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
..+..++.++++.. +..+...+..+.....++....+.|.+.++.|+++.+ .+........+
T Consensus 195 ---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~-----------~g~~~~~~~~~ 256 (356)
T TIGR00901 195 ---VLKPIREFFQRKNM----IQALLLLLLIVLYKLGDSAATVLTTLFLLDMGFSKEE-----------IALVAKINGLL 256 (356)
T ss_pred ---HHHHHHHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH-----------HHHHhHHHHHH
Confidence 00011111222111 1123333333334455566666777777776665543 22223334445
Q ss_pred hhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccC---CCchHHHHHHHHHHHHHhhcCccccccccccc
Q 010194 353 STVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL---PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAE 429 (515)
Q Consensus 353 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (515)
..+++.++++++.||+|+|+.+..+.++.++...++......... .....+......+...+......+...++..|
T Consensus 257 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 336 (356)
T TIGR00901 257 GAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSK 336 (356)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 677888999999999999998888877776665544432110000 00112222222333333333345677889999
Q ss_pred cCchhhhhhhhHHHHHHhh
Q 010194 430 IFPARLRSTCHGISAASGK 448 (515)
Q Consensus 430 ~~p~~~~~~~~g~~~~~~~ 448 (515)
.+|++.||+.+|+.+...+
T Consensus 337 ~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 337 LSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hcCCCccHHHHHHHHHHHh
Confidence 9999999999999987764
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-24 Score=209.74 Aligned_cols=378 Identities=16% Similarity=0.118 Sum_probs=226.8
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMM 107 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 107 (515)
+++.....++.....+.+++.+..|+ |-+ ....|+.+.+.++.+++.++.|+++|.||||..++.+.++
T Consensus 49 ~~~~~~~~~~~~~~~a~~l~~I~~di----------G~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l 117 (599)
T PF06609_consen 49 FSLAVIAAYFVLVLPASILPYINADI----------GGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLL 117 (599)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHhc----------CCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHH
Confidence 33434444555566677888999998 554 5678999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
..+|++.++.+++ ...++.+..+.|+|.|... .....++|..|.|+|....++.....-.....++.++..+.
T Consensus 118 ~vvG~Iv~atA~~------~~~~iag~~l~GvgaG~~~-~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~ 190 (599)
T PF06609_consen 118 GVVGSIVCATAQN------MNTFIAGMVLYGVGAGVQE-LAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFA 190 (599)
T ss_pred HHhHHHHhhcCCc------HHHHHHHHHHHHHhhHHHH-HHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhc
Confidence 9999999999999 8999999999999977654 55667999999999987766555444343334555554432
Q ss_pred HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhc--cHHHHHHHHHHHH----
Q 010194 188 AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAK--NAKQAAADMSKVL---- 261 (515)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~--~~~~~~~~~~~~~---- 261 (515)
.+.+|||.|++.++...+.+++.++...+|++...+.+ .+++..++++..-
T Consensus 191 -----------------------~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~~~~~~~~~s~~~~l~~lD~IG~~L~ 247 (599)
T PF06609_consen 191 -----------------------AHSGWRWIFYIFIIWSGIALVLIFFFYFPPPRAQLHGRKLSKREQLKELDWIGIFLF 247 (599)
T ss_pred -----------------------cCCCcchHHHHHHHHHHHHHHHHHHHhCCCchhhhccccCcHHHHHHHhhHHHHHHH
Confidence 34569999999877766654443332233332111111 1223233222210
Q ss_pred ---------HhhhhH------hhhhHH---------------HhhcCCc-chhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 010194 262 ---------QVELEA------EQEKVE---------------QEKGKND-FGLFSAKFVRRHGLHLIGTTVTWFLLDVAY 310 (515)
Q Consensus 262 ---------~~~~~~------~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (515)
..+... ...+.- -|..... ..++-.++++ +.+.+....+..+..+..+
T Consensus 248 ~~Gl~LfLlgl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~-~~r~~~~~lvi~fi~G~~~ 326 (599)
T PF06609_consen 248 IAGLALFLLGLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFK-DRRGFAALLVISFISGMNF 326 (599)
T ss_pred HHHHHHHHHHHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhc-cchHHHHHHHHHHHHHHHH
Confidence 000000 000000 0111111 1222222222 2234455555556666667
Q ss_pred HHHhhhhhHHHhHh-cccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhh-HHHHHHHHHHHHHHHH
Q 010194 311 YSQNLFQKDIFTAI-GWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFA-IQLMGFFFMTVFMFAL 388 (515)
Q Consensus 311 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~ 388 (515)
+....+.|...... +-++..... ..........+...|.++.+.+..+++|-| .++.+..++.+++.++
T Consensus 327 ~s~~~l~p~~~~~vf~~d~~~~~~---------~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gam 397 (599)
T PF06609_consen 327 FSVNILWPQQVVNVFGSDPISITE---------IGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAM 397 (599)
T ss_pred HHHHHHHHHHHhhhccCCCcccce---------eehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH
Confidence 77766666655442 222211000 111444555566677778888888887644 4456665655544444
Q ss_pred HhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh
Q 010194 389 AIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA 462 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~ 462 (515)
.... .+..... + .+.++.+++...........++-..|++.-|++.|+...++.+|+.++..++..+.
T Consensus 398 a~~~----~~n~~~~-i-~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 398 AAVR----PDNKNAA-I-AFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred HHcc----CCCcchH-H-HHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4332 1111111 1 11222222111122234455666789999999999999999999999988775543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=193.91 Aligned_cols=385 Identities=15% Similarity=0.056 Sum_probs=266.5
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH
Q 010194 23 TAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYG 102 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~ 102 (515)
..+..+...+++.++......+++|.+++.+ +++..|.+++...++.|+.+.+++.|++.+|+|+|+.++
T Consensus 13 ~~~v~~t~lFfl~G~~~~l~diLip~l~~~f----------~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~ 82 (422)
T COG0738 13 LAFVLLTSLFFLWGFITCLNDILIPHLKEVF----------DLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIV 82 (422)
T ss_pred eHHHHHHHHHHHHHHHhhcchhhHHHHHHHh----------CccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHH
Confidence 3445555666777888888899999999999 999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 010194 103 MTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182 (515)
Q Consensus 103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l 182 (515)
+|+.++++++.+..-+.+. ..+..++++-|+.|.|.+...+.+..+++...++++..+.+++.+...++|.+++|++
T Consensus 83 lgL~l~avg~~lF~pAa~~---~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~ 159 (422)
T COG0738 83 LGLLLYAVGAALFWPAASS---KSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLL 159 (422)
T ss_pred HHHHHHHHHHHHHhhhhhh---hhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999999998643332 1188999999999999999999999999999999888999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCcc--ccCCCchHHHHHHHhHHHHHHHHHHHHh--cCCchhhHHHHhccHHHHHHHHH
Q 010194 183 AIIVSAAFKANFPAPIYSANPAAST--VPEADYIWRIILMFGAIPALLTYYWRMK--MPETARYTALVAKNAKQAAADMS 258 (515)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~ 258 (515)
++.+...-... ..++.+.. .......||++|...+...++..+.... .||.++.. .++
T Consensus 160 g~~lils~~~~------~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~~--~~~---------- 221 (422)
T COG0738 160 GSSLILSGVAL------TMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVAA--PSL---------- 221 (422)
T ss_pred HHHHHHhhhhh------ccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCccc--ccc----------
Confidence 99887521000 00000000 0001223888888866665555544433 33332210 000
Q ss_pred HHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHH
Q 010194 259 KVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIE 337 (515)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 337 (515)
.+.++....+.++.+ .+..-.+..++..........+.+.++.+ .|.+..+
T Consensus 222 --------------~~~~~~~~~~l~~~~-------~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~~g~~~~~------- 273 (422)
T COG0738 222 --------------GASGSAGLSSLFQNK-------HLRLGVLAIFLYVGAEVAIGSFLVSYLEELLGLNEQQ------- 273 (422)
T ss_pred --------------cccccchHHHHHhCh-------HHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCccHHH-------
Confidence 000000112222222 22333444455555566666777777777 3333322
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhc
Q 010194 338 EVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNF 417 (515)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (515)
+........++.++|++++.++.+|+...|.+.....+..+.++...+.. + . ..+......+.++.
T Consensus 274 -----aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~~-------g-~-v~~~~l~~ig~F~s 339 (422)
T COG0738 274 -----AAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALIG-------G-V-VALYALFLIGLFNS 339 (422)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc-------C-h-HHHHHHHHHHHHhH
Confidence 33377778888999999999999999988887776655555555544433 1 2 22233333444555
Q ss_pred CccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 010194 418 GPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGM 482 (515)
Q Consensus 418 ~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 482 (515)
..+|+.++...+..| +.. ...|........|+++.|++.|++.|..|....+.....+|.+..
T Consensus 340 imfPTIfslal~~l~-~~t-s~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 340 IMFPTIFSLALKNLG-EHT-SVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHHHHHhccC-ccc-cccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 568899999999998 333 334444455678999999999999999998877776666666665
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=226.64 Aligned_cols=403 Identities=14% Similarity=0.145 Sum_probs=257.4
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTL 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~ 105 (515)
...++..+.........+..++.+.++| +++.++.|++.+.+.++++++.++.|+++||+|||+.+.++.
T Consensus 36 ~~~~~~~~~~~~~~g~~~~~l~~iek~F----------~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ 105 (633)
T TIGR00805 36 LLLTCAQLQGLLYNGLVNSSLTTIERRF----------KLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGC 105 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhhchhhhhhh----------CCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecH
Confidence 4444567777778888999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcC----CCC---------------------------------------c--hhHHHHHHHHHHHhhhc
Q 010194 106 MMMVICSLASGLSF----GKE---------------------------------------P--KAVMITLCFFRFWLGFG 140 (515)
Q Consensus 106 ~~~~i~~~~~~~~~----~~~---------------------------------------~--~~~~~~l~~~r~l~G~~ 140 (515)
++++++++++++.+ .|. . ...+..++++|+++|+|
T Consensus 106 ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG 185 (633)
T TIGR00805 106 AIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIG 185 (633)
T ss_pred HHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhcc
Confidence 99999999998763 000 0 01256788999999999
Q ss_pred cccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-C-CCccCCCCCCccccCCCc--hHH
Q 010194 141 IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANF-P-APIYSANPAASTVPEADY--IWR 216 (515)
Q Consensus 141 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~-~-~~~~~~~~~~~~~~~~~~--~wr 216 (515)
.+...+...+++.|++|+++|+++++++..+..+|.++|+++++.+.+...+.. . .++.+.+| .+..| +||
T Consensus 186 ~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~-----~dprWiGaWw 260 (633)
T TIGR00805 186 ATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTP-----TDPRWIGAWW 260 (633)
T ss_pred CCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCC-----CCccHHHHHH
Confidence 999999999999999999999999999999999999999999999886542110 0 00111111 11222 388
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHH
Q 010194 217 IILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHL 296 (515)
Q Consensus 217 ~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
..|++.+++.++..+.++++|++.+.. .++.+.++..+... +.+ +++..........+..+.++.... .+.+
T Consensus 261 l~Fli~g~l~~l~~v~l~~~p~~lp~~-~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~Ll~---n~~f 332 (633)
T TIGR00805 261 IGFLICGGVALLTSIPFFFFPKALPKE-GKRVNVDVHETEKL---EKS-EDKSRKKNSDITKDFPKIIKRLLC---NPIY 332 (633)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccCCc-ccccchhhhhhhcc---ccc-ccccchhhhhhHHHHHHHHHHHHc---CcHH
Confidence 889887777776555556666643210 00000000000000 000 000000000000000111111111 1244
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc--hhhH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIG--RFAI 373 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~ 373 (515)
+...+..+.....++....+.|.++++ .++++... +.+.......+.+++.+++|+++||++ .|+.
T Consensus 333 ~~~~l~~~~~~~~~~~~~~~lP~yl~~~~g~s~~~a-----------g~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~ 401 (633)
T TIGR00805 333 MLVILAQVIDSLAFNGYITFLPKYLENQYGISSAEA-----------NFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKA 401 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-----------HHHhhhhhhhHHHHHHhhhhheeeeecccHHHH
Confidence 555556666667778888899999876 55554432 222223333356788889999999988 4566
Q ss_pred HHHHHHHHHHHHHHHHhh--------------------------h-h--------c------------------------
Q 010194 374 QLMGFFFMTVFMFALAIP--------------------------Y-H--------H------------------------ 394 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~--------------------------~-~--------~------------------------ 394 (515)
+..+.++..++.++.... . . .
T Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~agv~~~y~~~~~~~~~~~~Cn~~C~C~~~~~~PVCg~~~~tY~SpC~AGC~~ 481 (633)
T TIGR00805 402 AYFAICLSTLSYLLCSPLFLIGCESAPVAGVNNPSTDQSIYVENPTDCNRQCSCDSSFFDPVCGDNGLAYLSPCHAGCSM 481 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHeecCCCCccceeeccCCCcccCCCChhccCCCCCCCCCCcccccCCCCCEEECccccCCCC
Confidence 666666555554432210 0 0 0
Q ss_pred ---------ccC--------C---------C---c-hHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHH
Q 010194 395 ---------WTL--------P---------D---H-RIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISA 444 (515)
Q Consensus 395 ---------~~~--------~---------~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 444 (515)
+.. . . . ...++++..+..........| ....+.+.+|+++|+.+.|+..
T Consensus 482 ~~~~~~~~~y~~CsCi~~~~~~~a~~g~C~~~C~~~~~~f~~~~~~~~~~~~~~~~p-~~~i~lR~V~~~~rs~alg~~~ 560 (633)
T TIGR00805 482 SVGTGSNMVYTNCSCVQTPGNSSAKKGLCNPPCATSLLYFLILFIPLSFIAFITAVP-LYMVLLRVVNPEEKSLAIGLQW 560 (633)
T ss_pred ccCCCCcceecccccccCCCCCCCcCCCCCcccchhHHHHHHHHHHHHHHHHhccCc-hheEEeeccCcccchHHhhHHH
Confidence 000 0 0 0 111222222222333333334 3456678899999999999998
Q ss_pred HHhhh-hHHHHHHHHHHhhh
Q 010194 445 ASGKA-GAIVGAFGFLYLAD 463 (515)
Q Consensus 445 ~~~~~-g~~i~~~~~~~l~~ 463 (515)
.+.++ |.+-+|+++|.+.|
T Consensus 561 ~~~rllg~iP~pi~fG~~iD 580 (633)
T TIGR00805 561 LCMRVFATIPAPILFGLLID 580 (633)
T ss_pred HHHHHhcCCChhHHHhhhhh
Confidence 87775 77889999999998
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.5e-26 Score=202.12 Aligned_cols=388 Identities=14% Similarity=0.030 Sum_probs=261.1
Q ss_pred HHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhc-------------cC---------------------------CCCCC
Q 010194 23 TAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYY-------------KE---------------------------GSDSP 62 (515)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------------~~---------------------------~~~~~ 62 (515)
.++...+.+.+.+.+....+.+.+|....|..+ +. .+..+
T Consensus 21 lilviv~ialllDnmL~~vivPiiP~~L~d~~~~p~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~ 100 (464)
T KOG3764|consen 21 LILVIVSIALLLDNMLYTVIVPIIPGYLYDIQAEPTIIQPFFPISTAPIPPGSMSSFSSLNISTESTNASAGKSPAEAIS 100 (464)
T ss_pred eEEEEEehhhhccCccceeeeccCccHHHHhccCCccCccccccccCCCCCccccceecccCCccccccccccCchhccC
Confidence 444555666677776677777777776666542 00 11133
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 63 GTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 63 ~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
.+.+++++|++.+++.+...+.+++.|.+.||+|+|-.+++|+.++..+++++++..+ ++.++++|.+||+|.+
T Consensus 101 ~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~s------y~~l~vAR~LQgvgsA 174 (464)
T KOG3764|consen 101 LDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNS------YPMLFVARSLQGVGSA 174 (464)
T ss_pred ccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcch------hHHHHHHHHHhhhhHH
Confidence 4567789999999999999999999999999999999999999999999999999999 7999999999999999
Q ss_pred cccchhhHhhhhcccccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHH
Q 010194 143 GDYPLSATIMSEYANKKT-RGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMF 221 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~-r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~ 221 (515)
....+..++++|.+|+++ |++++|+...+.++|.++||++|+.+. +..|.+.+|++
T Consensus 175 ~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilY-----------------------e~~Gk~aPFlV 231 (464)
T KOG3764|consen 175 FADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILY-----------------------EFAGKSAPFLV 231 (464)
T ss_pred HHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchH-----------------------hhcCCcCcHHH
Confidence 999999999999999664 799999999999999999999999995 45568999999
Q ss_pred hHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHH
Q 010194 222 GAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTV 301 (515)
Q Consensus 222 ~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (515)
.++++++-..+.+++-|..+. + . .+.++..+.+++++++... .....
T Consensus 232 L~~v~Lld~~L~l~vi~p~~~---~-~-----------------------~~~~~~~~~~~Ll~dP~I~------~~aga 278 (464)
T KOG3764|consen 232 LAIVLLLDGALQLLVIEPTEM---D-P-----------------------DSTEQGTPMWSLLMDPYIL------LIAGA 278 (464)
T ss_pred HHHHHHHHHHHHHheeCcccc---C-c-----------------------cccccCccHHHHHhCchHh------hhhcc
Confidence 988888876666665443211 0 0 0112334455666655432 11111
Q ss_pred HHHHHHHHHHHHhhhhhH-HHhHhcccCC-cccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHH
Q 010194 302 TWFLLDVAYYSQNLFQKD-IFTAIGWIPK-AKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFF 379 (515)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 379 (515)
..++. .......--.+. ..++.. ++. +.+. ..+...+...++..+.|.+.||++..+.+.....
T Consensus 279 i~~~n-~~lafLePtlslwm~e~m~-~p~w~~G~------------~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~g 344 (464)
T KOG3764|consen 279 ITFSN-SSLAFLEPTLSLWMLETMF-TPGWEVGL------------AFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGG 344 (464)
T ss_pred hhhcc-chHHHhCcccHHHHHHhcc-CCCcceee------------eecccccchhccCchHHHHHHhcCchhHHHHHHH
Confidence 22221 111111111222 222333 333 3333 5666777888888999999999995444433333
Q ss_pred HHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchh---hhhhhhHHHHHHhhhhHHHHHH
Q 010194 380 FMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR---LRSTCHGISAASGKAGAIVGAF 456 (515)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~~~g~~i~~~ 456 (515)
+..++.......... .-...+.......+.+........|... +..|....+ .-|.++++......++.++||.
T Consensus 345 l~~~G~~~~~iP~~~--~~~~L~vp~~~l~~~i~~~dasl~P~l~-~lvd~rh~s~~~vYGsVyaIad~a~sla~a~GP~ 421 (464)
T KOG3764|consen 345 LATVGVSSGPIPFAT--SIAQLWVPNFGLGFGIGLADASLIPTLG-YLVDPRHVSGFNVYGSVYAIADAAFSLAYAIGPT 421 (464)
T ss_pred HHHHHHHhchhHhhh--hHHHHhhhhHHHHHHHHHHHHHHhhhhH-HhcchhhccccceeeeHHHHHHHHHHHhhhcccc
Confidence 333332222222210 0001111122222223333333334332 333333233 5688999999999999999999
Q ss_pred HHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 457 GFLYLADTSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 457 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
+.|.+.+..|+++...+.++..++..-+..+++
T Consensus 422 ~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll~ 454 (464)
T KOG3764|consen 422 FGGSLVEAIGFEWLMTIIGILNLIYAPVLLLLR 454 (464)
T ss_pred ccchheeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888888776665443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-23 Score=199.77 Aligned_cols=378 Identities=13% Similarity=0.066 Sum_probs=236.2
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHH--HHHHHHHHHHHHHHHh-hhhhhhhhhhHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAV--NGVALCGTLAGQLFFG-WLGDKMGRKRVY 101 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~--~s~~~l~~~i~~~~~G-~l~dr~Grr~~l 101 (515)
+..++..++.++.......+.+|...++. |.+.+++|++ .+.+.+...+.+++++ +..||+||||..
T Consensus 3 ~~~~~~ly~~~g~~~~~~~p~lp~~l~~~----------g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~ 72 (390)
T TIGR02718 3 VITLGLLYLSQGIPIGLAMDALPTLLRED----------GAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSW 72 (390)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhH
Confidence 45666778889999999999999999999 9999999997 4677888888888884 479999999987
Q ss_pred HHHHHHH-HHHHHHhh-hcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMM-VICSLASG-LSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 102 ~~~~~~~-~i~~~~~~-~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
++...+. ++.....+ +.... .....++..-++.++..+...+...++..|..++++++...+....+..+|.++|
T Consensus 73 i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g 149 (390)
T TIGR02718 73 VLPMQCLVSACLASLALVGPDV---AGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGG 149 (390)
T ss_pred HHHHHHHHHHHHHHHHcCCcch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHH
Confidence 5555332 22222222 21110 0023445555666677777778888888999988888888888888888999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSK 259 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~ 259 (515)
+...+.+.+ ..|||..|++.++..++..+..++++|+++. .++++ ++.
T Consensus 150 ~~~~~~l~~-----------------------~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~--~~~~~-~~~------ 197 (390)
T TIGR02718 150 GAGTLVLFG-----------------------KFGQRPAFLLVACVPLASLVCVLWLKDRAVA--SPEAP-LAR------ 197 (390)
T ss_pred HHHHHHHHH-----------------------HhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC--ccccc-hhh------
Confidence 888887753 3459999999887776655554455443221 00000 000
Q ss_pred HHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHH
Q 010194 260 VLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEV 339 (515)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (515)
..+.++.+|++.. +..... .++..........+.+.++++.|+++++
T Consensus 198 -----------------~~~~~~~l~~~~~----~~~~~~---~~l~~~~~~~~~~~~~~~l~~~G~s~~~--------- 244 (390)
T TIGR02718 198 -----------------RASLFRFFRRPLA----WSLLAL---ALLSAMTAVSGFGLSKLYLVDAGWPLEW--------- 244 (390)
T ss_pred -----------------HHHHHHHHcCcCH----HHHHHH---HHHHHHHHHHHHHHhhHHHHhcCCCHHH---------
Confidence 0011122222211 112222 2222223333344556677777776654
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCc
Q 010194 340 YKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGP 419 (515)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (515)
.+...........+++.++.|++.||+|+|+.+..+..+..+..+........+.. .... ......+...+.....
T Consensus 245 --ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~ 320 (390)
T TIGR02718 245 --IGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLA-PGIA-VAWSCSAFGSLITGIT 320 (390)
T ss_pred --HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccC-CcHH-HHHHHHHHHHHHHHHH
Confidence 23323333345667778899999999999998887766553332222211111111 1111 1111112211111111
Q ss_pred cccccccccccCch-hhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHH
Q 010194 420 NTTTFVVPAEIFPA-RLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLF 484 (515)
Q Consensus 420 ~~~~~~~~~~~~p~-~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~ 484 (515)
.+..++...+..++ +.+++.+++.+...++|..++|.+.|.+.|..|++..|...+++.+++.+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~ 386 (390)
T TIGR02718 321 SVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL 386 (390)
T ss_pred HHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence 23344444455554 889999999999999999999999999999999998888877777666544
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=183.35 Aligned_cols=369 Identities=17% Similarity=0.134 Sum_probs=276.1
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 010194 22 FTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVY 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l 101 (515)
+..+..+.+..+..--..+.++|+++++.+|+ |+|.+..|++++...+...+.+++..+++.|+|.++.+
T Consensus 11 ~~li~gIvlia~NLR~~itsvgPLL~~Ir~~~----------gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l 80 (395)
T COG2807 11 LLLLAGIVLIAFNLRPAITSVGPLLDEIRQDL----------GLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSL 80 (395)
T ss_pred hHHHHHHHHHHhccchhhhhhhhhHHHHHHHh----------cccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHH
Confidence 44444444555555556677899999999999 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGM 181 (515)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~ 181 (515)
..++++..++.++-... + .+.++.+-.+.|.|.+......+..+.+.+|+| -+..++++....++|..+++.
T Consensus 81 ~~~Llli~~G~~iR~~~-~------~~~L~~gt~l~G~gIav~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~ 152 (395)
T COG2807 81 FLALLLIAAGILIRSLG-G------LPLLFLGTLLAGAGIAVINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAA 152 (395)
T ss_pred HHHHHHHHHHHHHHhcc-c------HHHHHHHHHHHHhhHHHHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhh
Confidence 99999999999998887 4 588999999999999999999999999999866 799999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHH
Q 010194 182 VAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVL 261 (515)
Q Consensus 182 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+...+.+.. .+||....+-+.++++.++.++ |...|. +...
T Consensus 153 lavpla~~~----------------------~gW~~aL~~WAl~allAl~~Wl--Pq~~r~-----~~~~---------- 193 (395)
T COG2807 153 LAVPLAQHS----------------------GGWRGALGFWALLALLALLIWL--PQALRE-----QAAS---------- 193 (395)
T ss_pred hhhHHHHhh----------------------ccHHHHHHHHHHHHHHHHHHHh--hhcccc-----cccc----------
Confidence 999987543 3599999998888888776653 332111 0000
Q ss_pred HhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHH
Q 010194 262 QVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYK 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
.+.+.++..+.++++ ..|.+.+.+..++..+|....|+|.++.+.|+++.+.+.
T Consensus 194 -----------~~~~~~~~~~vw~~~-------~aW~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~-------- 247 (395)
T COG2807 194 -----------IATKLVSVRKVWRSP-------LAWQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGS-------- 247 (395)
T ss_pred -----------cccccccccccccCc-------hhHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhh--------
Confidence 001111222233333 356677888888899999999999999999999887554
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcc
Q 010194 342 IARAQTLIALCSTVPGYWFTVALIDKIG-RFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPN 420 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (515)
......+..++..+....+.+|.. +|+.......++.++.+.+.+.. .+..... .+..+....+.+
T Consensus 248 ----llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~P------~~~~~lw---~~llG~G~G~~F 314 (395)
T COG2807 248 ----LLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLLAP------GQLPILW---ALLLGLGQGGAF 314 (395)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhh------hhHHHHH---HHHHhCccchHH
Confidence 666777788888889999999754 55665666666666665554332 1122222 233333333345
Q ss_pred ccccccccccC-chhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHH
Q 010194 421 TTTFVVPAEIF-PARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 421 ~~~~~~~~~~~-p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 486 (515)
|...+.+.+.. .++..+.-.|+.+.++++-...||.++|++.|..| |...+..+....++..+.-+
T Consensus 315 ~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 315 PLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred HHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 55555554444 45777888999999999999999999999999766 66666666555555554444
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.4e-23 Score=202.81 Aligned_cols=404 Identities=11% Similarity=0.062 Sum_probs=233.7
Q ss_pred HhHHHHHHhhhHHHH-HHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHH
Q 010194 30 MGFFTDAYDLFCISL-VTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVYGMTLMM 107 (515)
Q Consensus 30 ~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~~ 107 (515)
+..+...+..+.... ....+.+++ |.+.++.+++.+.+........+++|+++|| +|||++++.+.++
T Consensus 28 ~~~~~~~~~~y~~~~~l~~yl~~~l----------g~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~ 97 (500)
T PRK09584 28 SIELWERFGYYGLQGIMAVYLVKQL----------GMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIV 97 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 333344444333344 445566788 9999999999888877767777899999999 5999999999999
Q ss_pred HHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccccc--chhHHHHHHHHHHHHHHHHHHHHHH
Q 010194 108 MVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKT--RGAFIAAVFAMQGFGILSGGMVAII 185 (515)
Q Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~ 185 (515)
.+++.++++++.+. .+.++++|+++|++.|...+...+++.|++|+++ |..++++++.+.++|..+||.++++
T Consensus 98 ~~ig~~l~~~~~~~-----~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~ 172 (500)
T PRK09584 98 LAIGYALVAWSGHD-----AGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPW 172 (500)
T ss_pred HHHHHHHHHHhccc-----HHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHH
Confidence 99999999887542 5677889999999999989999999999998653 4567888999999999999999999
Q ss_pred HHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH----HHhcCCchhhHHHHhccHHHHHHHH----
Q 010194 186 VSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYW----RMKMPETARYTALVAKNAKQAAADM---- 257 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~----~~~~~e~p~~~~~~~~~~~~~~~~~---- 257 (515)
+. +..|||+.|++.++..++.++. ...++|.++....++.+........
T Consensus 173 l~-----------------------~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (500)
T PRK09584 173 LA-----------------------AKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSKPDFEPINYRKLLLTIVGVV 229 (500)
T ss_pred HH-----------------------HhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCCccccchhhHHHHHHHHH
Confidence 96 3456999999977544443322 2234443111000000000000000
Q ss_pred -----HHHHHhhhhHhhh----------hHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 010194 258 -----SKVLQVELEAEQE----------KVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT 322 (515)
Q Consensus 258 -----~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (515)
......+.+.... ........+. +... ++ ..+.. +..+.....++......+..+.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~---~~~~~-~~~~~~~i~f~~~~~q~~~~l~ 300 (500)
T PRK09584 230 ALIAIATWLLHNQEIARMALGVVALGIVVIFGKEAFAM----KGAA-RR---KMIVA-FILMLEAIIFFVLYSQMPTSLN 300 (500)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhc----CHHH-HH---HHHHH-HHHHHHHHHHHHHHHHhccHHH
Confidence 0000000000000 0000000000 0011 11 11111 1111222344444444444433
Q ss_pred Hhc---ccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcc
Q 010194 323 AIG---WIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFT----VALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHW 395 (515)
Q Consensus 323 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
..+ .+....+.... . + .......+..++..++. +++.||.+..+.+.+++++.++++..+.......
T Consensus 301 ~~~~~~~~~~~~g~~i~-~----~-~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~ 374 (500)
T PRK09584 301 FFAIRNVEHSILGIAVE-P----E-QYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFA 374 (500)
T ss_pred HHHHHhccccccceEEC-H----H-HHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 11111111000 0 0 12223333333333344 4445555555777888888888888876654211
Q ss_pred c-CCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh----------c
Q 010194 396 T-LPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD----------T 464 (515)
Q Consensus 396 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~----------~ 464 (515)
. ....+.++.+...++.+.+.....|...+++.+..|++.||+++|+......+|..++..+.+.... .
T Consensus 375 ~~~~~vs~~~~~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~ 454 (500)
T PRK09584 375 NDAGIVSVNWLIASYGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSL 454 (500)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 1 1112233555556666677777788999999999999999999998877766666666666542211 1
Q ss_pred cCchHHHHHHHHHHHHHHHHHH
Q 010194 465 SGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 465 ~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
.++...|...++.+++..++.+
T Consensus 455 ~~~~~~f~~~~~~~~~~a~~~~ 476 (500)
T PRK09584 455 EVYGRVFLQIGIATAVIAVLML 476 (500)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 2366777777776665554444
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-22 Score=190.18 Aligned_cols=419 Identities=11% Similarity=0.012 Sum_probs=264.4
Q ss_pred HHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhhhHHHHH-HHHHHH
Q 010194 36 AYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGD----KMGRKRVYGMT-LMMMVI 110 (515)
Q Consensus 36 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Grr~~l~~~-~~~~~i 110 (515)
.+......+.++.+.+++ +.+..+.+++..+..+...+.+++.|+++| |+||||.++++ .....+
T Consensus 17 q~~~~l~~~~l~~yl~~l----------g~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~ 86 (477)
T TIGR01301 17 QFGWALQLSLLTPYVQEL----------GIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAF 86 (477)
T ss_pred HHHHHHHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHH
Confidence 334444556666677788 999999999999999999999999999999 59999997764 666666
Q ss_pred HHHHhhhcCCCCc-----------hhHHHHHHHHHHHhhhccccccchhhHhhhhccccccc--hhHHHHHHHHHHHHHH
Q 010194 111 CSLASGLSFGKEP-----------KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTR--GAFIAAVFAMQGFGIL 177 (515)
Q Consensus 111 ~~~~~~~~~~~~~-----------~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r--~~~~~~~~~~~~~G~~ 177 (515)
+.++.+++++... ....+.++++-.+..++.....+...+++.|.+|+++| +.+.++.+...++|.+
T Consensus 87 ~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~i 166 (477)
T TIGR01301 87 AVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNV 166 (477)
T ss_pred HHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 6677777665200 00012233333344557777788889999999998865 5789999999999999
Q ss_pred HHHHHHHHHH--HhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHHHHH
Q 010194 178 SGGMVAIIVS--AAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAKQAA 254 (515)
Q Consensus 178 ~g~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~ 254 (515)
+|+.+++... ..++..... .++ ..-.+.|..|++.++..++. ++..+..+|.|... .++.++++
T Consensus 167 lg~~~g~~~~~~~~~~~~~~~--------~~~--~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~~~- 233 (477)
T TIGR01301 167 LGYAAGAYSGLYKIFPFTKTE--------ACG--VSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFINSE- 233 (477)
T ss_pred HHHHHHHHHhHHHhccccccc--------ccc--cccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchhhh-
Confidence 9999998762 211110000 000 01135899999977766664 44556788876421 00000000
Q ss_pred HHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccch
Q 010194 255 ADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMN 334 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (515)
.+++ .+.+.....+++++.. ++..+.++.++...++..+.++....|.+.+..+.-+..+.....
T Consensus 234 ----------~~~~---~~~~~~~~~~~i~~~~--~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~~~~~~~ 298 (477)
T TIGR01301 234 ----------AAPP---SKHGEEAFFGELFGAF--KYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGGSVNQGA 298 (477)
T ss_pred ----------cccc---cccchhhhHHHHHHHH--HHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCCCCcchh
Confidence 0000 0000011122333222 222334555555566666666666666666665422222111122
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHhhhhcc-------------cCCCc
Q 010194 335 AIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGR-FAIQLMGFFFMTVFMFALAIPYHHW-------------TLPDH 400 (515)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 400 (515)
..+.+...+........+...+..++..++.+|+|+ |+....+.++.++++....+..... ..+..
T Consensus 299 ~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 378 (477)
T TIGR01301 299 KYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGESLPPPTG 378 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccCcchh
Confidence 344554556667777777777777888999999985 6776888888888877776544210 00001
Q ss_pred hHHHHHHHHHHHHHhhcCccccccccccccCch--hhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC--chHHHHHHHH
Q 010194 401 RIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPA--RLRSTCHGISAASGKAGAIVGAFGFLYLADTSG--VKKALLILGG 476 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g--~~~~~~~~~~ 476 (515)
............+.......++.++++++..|+ +..|..+|+.|.+..+.+.+..+..|.+.+..| ...++.+.++
T Consensus 379 ~~~~~l~~~~~~Gi~~A~~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv 458 (477)
T TIGR01301 379 IKASALIVFAILGIPLAITYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAV 458 (477)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHH
Confidence 112333333444444444567888999999885 455999999999999999999998888666444 4567777888
Q ss_pred HHHHHHHHHH-hccccC
Q 010194 477 ANFLGMLFTF-LVPESK 492 (515)
Q Consensus 477 ~~~~~~~~~~-~~~~~~ 492 (515)
..+++.++.+ .+|+.+
T Consensus 459 ~~~~aa~~~~~~~~~~~ 475 (477)
T TIGR01301 459 AAFVSGLLALILLPRPR 475 (477)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 8888888777 666654
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-22 Score=199.16 Aligned_cols=410 Identities=14% Similarity=0.086 Sum_probs=247.4
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
..++|..+..........+. .+.++...+.+.+++ |++.++++++.+.. ....+++++.|++.||+||
T Consensus 23 e~~Rw~~lva~~~~~~~~g~-~y~fsv~s~~L~~~l----------gls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~ 90 (591)
T PTZ00207 23 EPRRFALLVLGAFCSICTSF-MYAFNLISGAMQARY----------NLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGP 90 (591)
T ss_pred ccchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh----------CcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc
Confidence 35566665555554444433 356677889999999 99999999998874 4556788899999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL 177 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 177 (515)
|+++.++.+++.++.++++++.+..-..+++.+++.|++.|+|.+...+.....+.+|+| ++||++.++...+.++|.+
T Consensus 91 R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsa 169 (591)
T PTZ00207 91 RPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSA 169 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999997210000118999999999999999888999999999997 6799999999999999998
Q ss_pred HH-HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCch--hhHHHHh-ccHHH
Q 010194 178 SG-GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETA--RYTALVA-KNAKQ 252 (515)
Q Consensus 178 ~g-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p--~~~~~~~-~~~~~ 252 (515)
+. ++..+++. .+|+..|++.++..++ .++...++++.| ++...++ .++++
T Consensus 170 I~~~l~~~l~~-------------------------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~ 224 (591)
T PTZ00207 170 ILGSIQLAFFS-------------------------DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEE 224 (591)
T ss_pred HHHHHHHHHHH-------------------------HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHH
Confidence 64 44444442 1377777775555544 444445554443 3210110 01111
Q ss_pred HH-HHHHHH--------------------------------------------------H------H----------hhh
Q 010194 253 AA-ADMSKV--------------------------------------------------L------Q----------VEL 265 (515)
Q Consensus 253 ~~-~~~~~~--------------------------------------------------~------~----------~~~ 265 (515)
.. +...+. . . .+.
T Consensus 225 ~~~~~~~~~~y~~q~~p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~ 304 (591)
T PTZ00207 225 KAQRLMRKGVYLKQKAPMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKR 304 (591)
T ss_pred HHHHhhhhhhhhhcCCCceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCC
Confidence 11 000000 0 0 000
Q ss_pred hHhhhhHHH------------hhc-----------CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 010194 266 EAEQEKVEQ------------EKG-----------KNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT 322 (515)
Q Consensus 266 ~~~~~~~~~------------~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (515)
++++++.++ ++. +...+.+..... ...+|++....++.............++.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~---~~d~Wll~~~~~cg~g~gl~~~~N~~qI~~ 381 (591)
T PTZ00207 305 PHDDSDGKAKEHVEAGEEVSAAEDKVVETDVDYIAPQFQETFIEGLK---TARLWCLLWSIFCCVGAHFVIIFNARFIYT 381 (591)
T ss_pred cCCCccccccccccccccccccccccccccccCCCCCCcchHHHHHh---chhHHHHHHHHHHhhCchheeeecHHHHHH
Confidence 000000000 000 000001111111 234566666666655444555555666667
Q ss_pred Hh-cccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhh--------HHHHHHHHHHHHHHHHHhhhh
Q 010194 323 AI-GWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFA--------IQLMGFFFMTVFMFALAIPYH 393 (515)
Q Consensus 323 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--------~~~~~~~~~~~~~~~~~~~~~ 393 (515)
.+ |+.++... .........+++.+|++..|+++....+|+ ..+....++.++.+++....
T Consensus 382 sl~g~~~~~~~----------~~~~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~~- 450 (591)
T PTZ00207 382 ALAGEAPDDAL----------NTLLTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLTL- 450 (591)
T ss_pred HhcCCCCCccc----------eeeehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHHC-
Confidence 76 55222200 000345667778888888888773322222 22222222444444443332
Q ss_pred cccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHH-HHHHHHhhhcc-------
Q 010194 394 HWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVG-AFGFLYLADTS------- 465 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~-~~~~~~l~~~~------- 465 (515)
+...+.+..++.+++.....++....++|+|. ++-|+-+-+.....-+|..+- -.+.|.++|..
T Consensus 451 -------p~~~L~~~~~lvg~~~G~~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~ 522 (591)
T PTZ00207 451 -------PKAALPLPYFIAAFANGFMAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQD 522 (591)
T ss_pred -------CccHhHHHHHHHHHHhhHhHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 11233333444444444456777788899999 888887777777777777665 56778888732
Q ss_pred ---C---chHHHHHHHHHHHHHHHHHHh
Q 010194 466 ---G---VKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 466 ---g---~~~~~~~~~~~~~~~~~~~~~ 487 (515)
| ++..|++.+++++.+.+....
T Consensus 523 ~C~G~~C~~~~~~v~~~~~~~g~~~s~~ 550 (591)
T PTZ00207 523 VCTERVCVVMPLAFLLGLSFLAFITSTY 550 (591)
T ss_pred eeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence 1 677899999999999888763
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-20 Score=181.59 Aligned_cols=407 Identities=11% Similarity=-0.011 Sum_probs=225.6
Q ss_pred HHHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHHHHH
Q 010194 27 IAGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM-GRKRVYGMT 104 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~ 104 (515)
.+++..+...+..+.....+|. +.+++ |.++.+.+.+.+.+.....++.+++|+++||+ ||||+++++
T Consensus 13 ~l~~~~~~e~fs~Yg~~~~L~~yL~~~l----------gls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG 82 (493)
T PRK15462 13 YVVALQIWEYFSFYGMRALLILYLTNQL----------KYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLG 82 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 3333334444444444444444 45667 89999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccc--cchhHHHHHHHHHHHHHHHHHHH
Q 010194 105 LMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKK--TRGAFIAAVFAMQGFGILSGGMV 182 (515)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~g~~l 182 (515)
.++..++.++.+...+. ...++++..+.++|.|...+...++++|.+|++ +|..+.++.+.+.++|..++|.+
T Consensus 83 ~il~~lg~lll~~~~~~-----~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 83 ALLMAIGHVVLGASEIH-----PSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHHHHHHHhhcc-----hhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 99999998877654321 233444444555666777788889999999875 69999999999999999999999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcC----CchhhHHHHhccHHHHHHHHH
Q 010194 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMP----ETARYTALVAKNAKQAAADMS 258 (515)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~----e~p~~~~~~~~~~~~~~~~~~ 258 (515)
.+++. +..||++.|.++++..++.++.++... +..... .++.++++......
T Consensus 158 ~g~L~-----------------------~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~ 213 (493)
T PRK15462 158 CGYAQ-----------------------EEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGVN-KKVLRATNFLLPNW 213 (493)
T ss_pred HHHHH-----------------------hhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCC-CCCchhhhHHHHHH
Confidence 99985 445699999987665554444333221 110000 00000000000000
Q ss_pred H-----------HHHhhhhHhhhh-HHH-hh--------cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Q 010194 259 K-----------VLQVELEAEQEK-VEQ-EK--------GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQ 317 (515)
Q Consensus 259 ~-----------~~~~~~~~~~~~-~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (515)
. .......+.... .-. .. .....+ .++.. |++....+.+.+........+.....-.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e-r~r~~~~~~l~~~~~~Fw~~~~Q~~~sl 291 (493)
T PRK15462 214 GWLLVLLVATPALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQ-RKELGLIVTLTFFSMLFWAFAQQGGSSI 291 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHH-HhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 0 000000000000 000 00 000000 00011 1111111111111111111111111111
Q ss_pred hHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhch--h-----hHHHHHHHHHHHHHHHHHh
Q 010194 318 KDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGR--F-----AIQLMGFFFMTVFMFALAI 390 (515)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~-----~~~~~~~~~~~~~~~~~~~ 390 (515)
..+.++ +.+.+..+.+. ..+. ......+..++..++..++-.|..| | .-..++.++++++++.+.+
T Consensus 292 ~lfa~~-~vd~~~~g~~i-----p~~~-~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~ 364 (493)
T PRK15462 292 SLYIDR-FVNRDMFGYTV-----PTAM-FQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTL 364 (493)
T ss_pred HHHHHH-hccchhcceee-----CHHH-HHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 122211 11111111110 0111 2334444444455555555555522 2 1256788888888777765
Q ss_pred hhhcccC-CCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHh-hhhHHHHHHHHHHhhhc----
Q 010194 391 PYHHWTL-PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASG-KAGAIVGAFGFLYLADT---- 464 (515)
Q Consensus 391 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~~~~~l~~~---- 464 (515)
....... ...+..+++...++...+.....|+..+.++++.|++.+|..+|+..... .++..++..+.+...+.
T Consensus 365 ~~~~~~~~~~~s~~wl~~~~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~ 444 (493)
T PRK15462 365 SARWSAMYGHSSLPLMVLGLAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDA 444 (493)
T ss_pred HHhhcCCCCCcCHHHHHHHHHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCc
Confidence 4432221 12345556666677788889999999999999999999999999996643 46666665555544210
Q ss_pred --------cCchHHHHHHHHHHHHH
Q 010194 465 --------SGVKKALLILGGANFLG 481 (515)
Q Consensus 465 --------~g~~~~~~~~~~~~~~~ 481 (515)
..+...|...+...+++
T Consensus 445 ~~~~~~~~~~~~~~f~~~~~~~~~~ 469 (493)
T PRK15462 445 SGAINYSINAYIEVFDQITWGALAC 469 (493)
T ss_pred cccccchhhhHHHHHHHHHHHHHHH
Confidence 12445666666655555
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5e-21 Score=189.22 Aligned_cols=368 Identities=10% Similarity=0.013 Sum_probs=217.8
Q ss_pred hHHHHHHhhhHHHH-HHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhh-hHHHHH
Q 010194 31 GFFTDAYDLFCISL-VTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGD----KMGRK-RVYGMT 104 (515)
Q Consensus 31 ~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Grr-~~l~~~ 104 (515)
+.+...+....++. +...+.+.+ +++...+|.+..+.-+.-++..|+.|+++| |+||| +.++.+
T Consensus 14 g~~~~~~~~~~~~~~l~~yyt~v~----------Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g 83 (473)
T PRK10429 14 GAFGKDFAIGIVYMYLMYYYTDVV----------GLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIG 83 (473)
T ss_pred chhHHhHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhh
Confidence 33333333344444 345555666 999999999999999999999999999999 66995 556778
Q ss_pred HHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 105 LMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 105 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
....+++.+++...++.++...+..+++..++.+++.........++..|.. ++++|.+..++-..+.++|..+.+.+.
T Consensus 84 ~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~ 163 (473)
T PRK10429 84 TLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFT 163 (473)
T ss_pred hHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887777666644443211112445666777778888888888899999999 589999999987777777766666665
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHH
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQ 262 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~ 262 (515)
..+....+. ..+..+|+....+.++..++..+ ..+..+|.++.. ..+.
T Consensus 164 ~~~~~~~g~----------------~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~~--~~~~------------- 212 (473)
T PRK10429 164 LPFVNYVGG----------------GDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSSD--NQVS------------- 212 (473)
T ss_pred HHHHHHhCC----------------CchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCcc--cccc-------------
Confidence 544433331 01234688887776666555433 334466643210 0000
Q ss_pred hhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHH
Q 010194 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKI 342 (515)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
+++++.+.++.++....++. ++......+......+....+.+++.+.....+. ..
T Consensus 213 ----------~~~~~~~~~~~~~~~~~n~~---~~~ll~~~~~~~~~~~~~~~~~~y~~~y~~~~~~-----------~~ 268 (473)
T PRK10429 213 ----------AEGSHLTLKDIVALIYKNDQ---LSCLLGMALAYNIASNIINGFAIYYFTYVIGDAD-----------LF 268 (473)
T ss_pred ----------ccccCCCHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHhhheeeEEEEECCCHH-----------HH
Confidence 00111223333332222222 2222222222223333333333333322111100 01
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccc
Q 010194 343 ARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTT 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (515)
+ .......+..+++.++.+++.||+|+|+.+..+..+..++.+.+..... . .+ .......+..++.+.......+.
T Consensus 269 ~-~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~-~-~~-~~~~~~~i~~~l~g~~~~~~~~~ 344 (473)
T PRK10429 269 P-YYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGL-A-AP-HNALLIVIAGILLNIGTALFWVL 344 (473)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-c-Cc-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2334445667788889999999999999988777665555544432210 0 11 12222222223333333333456
Q ss_pred ccccccccCc-------hhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCc
Q 010194 423 TFVVPAEIFP-------ARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 423 ~~~~~~~~~p-------~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~ 467 (515)
.+++.+|..+ .+..|...|....+..++..+++.+.|.+.+..||
T Consensus 345 ~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 345 QVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6677888855 34456689999999999999999999999986665
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.4e-21 Score=186.56 Aligned_cols=347 Identities=10% Similarity=0.062 Sum_probs=213.7
Q ss_pred HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhh-HHHHHHHHHHHHHHHhhhc
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK----MGRKR-VYGMTLMMMVICSLASGLS 118 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr~-~l~~~~~~~~i~~~~~~~~ 118 (515)
.+...+.+++ |++..+.|.+.++..+..++..|+.|+++|| +|||| .++.+.+..+++.++....
T Consensus 31 ~l~~~~t~~~----------gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~ 100 (444)
T PRK09669 31 FLAYFYTDVF----------GLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT 100 (444)
T ss_pred HHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC
Confidence 4455666777 9999999999999999999999999999998 78855 4667777777777666666
Q ss_pred CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcc-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 010194 119 FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYA-NKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAP 197 (515)
Q Consensus 119 ~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~-~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~ 197 (515)
++.+....+..+++..++.+.+.........++.+|+. ++++|++..+....+..+|..+++.+...+....+.+
T Consensus 101 p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~---- 176 (444)
T PRK09669 101 PDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG---- 176 (444)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----
Confidence 54332233566677777777766677777789999998 5688999999988888999888888776665544320
Q ss_pred ccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhh
Q 010194 198 IYSANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEK 276 (515)
Q Consensus 198 ~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (515)
....+|+..+.+.++.+++..+. .+..+|.++. ++ ++
T Consensus 177 ------------~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~-----~~-------------------------~~ 214 (444)
T PRK09669 177 ------------DEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP-----EV-------------------------DN 214 (444)
T ss_pred ------------chhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC-----CC-------------------------cC
Confidence 23467998888877666554443 3334443211 00 00
Q ss_pred cCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhh
Q 010194 277 GKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVP 356 (515)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (515)
+.+.++.++....++..+.++...+ ..............++.+. .+... ...........+..++
T Consensus 215 ~~~~~~~~~~~~~n~~~~~l~~~~~---~~~~~~~~~~~~~~y~~~~-~~~~~-----------~~~~~~~~~~~i~~ii 279 (444)
T PRK09669 215 SSSVWKDLKLLLGNSQWRIMFIFNV---VLLTAVVTRGGATLYYVNY-VLLRP-----------DLATLFLVTGMIAGLF 279 (444)
T ss_pred CCCHHHHHHHHhCCchHHHHHHHHH---HHHHHHHHHhhhhheeeee-ecCCH-----------HHHHHHHHHHHHHHHH
Confidence 0111111222222222222222111 1111111111112222111 11110 0111233445566777
Q ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCc----
Q 010194 357 GYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFP---- 432 (515)
Q Consensus 357 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p---- 432 (515)
+.++.+++.||+|+|+....+..+..++...+.... + +......+..++.+.......+..+++.+|..+
T Consensus 280 ~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~ 353 (444)
T PRK09669 280 GALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIP-----P-SNVWLIFALNILFNFIQNLTTPLQWSMFSDVVDYEEK 353 (444)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhC-----c-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 888899999999999998877665554333222211 1 122223333333444444456777888888875
Q ss_pred ---hhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCc
Q 010194 433 ---ARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 433 ---~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~ 467 (515)
++..|...|..+.+..+|..+++.+.|.+.+..||
T Consensus 354 ~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 354 RSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred hcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 23456778999999999999999999999987776
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=178.20 Aligned_cols=370 Identities=16% Similarity=0.178 Sum_probs=235.2
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-hhhHHHHHHHHHH
Q 010194 31 GFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG-RKRVYGMTLMMMV 109 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G-rr~~l~~~~~~~~ 109 (515)
.+++..+....+.|..+...++. +.|.+|+|.+.+...+...++++++|.++||++ +||++.+..++.+
T Consensus 10 ~~f~~f~~~G~~~p~~~~~L~~~----------G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~ 79 (400)
T PF03825_consen 10 MYFLYFFAYGAFLPYLPLYLESR----------GFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSA 79 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHH
Confidence 34445555566667777777777 999999999999999999999999999999986 5777877777777
Q ss_pred HHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 010194 110 ICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV-AIIVSA 188 (515)
Q Consensus 110 i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l-~~~l~~ 188 (515)
+........++ ++.+++.-++..+......|...++..+...+ +++-.|-.-...++|.+++... +..+..
T Consensus 80 ~~~~~~~~~~~------f~~~~~~~~l~~~~~~p~~pl~dsi~~~~~~~--~~~~YG~iRlwGSiGf~~~~~~~~~~~~~ 151 (400)
T PF03825_consen 80 LALLLLAFSSS------FWWLFVIMLLFSFFFSPTMPLSDSIALSYLGD--RGKDYGRIRLWGSIGFIVAALAFGGLLGG 151 (400)
T ss_pred HHHHHHHHhcc------HHHHHHHHHHHHHHHccHHHHHHHHHHHHccc--ccCCCCcchhhhhHHHHHHHHHHHHHHHh
Confidence 77777777777 78888888888888888888888888888753 3334444555666777666544 222222
Q ss_pred hhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHh
Q 010194 189 AFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAE 268 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
..+ ..+....+++.+...++.....+.+|+.|+. .++++..+
T Consensus 152 ~~~--------------------~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~--~~~~~~~~---------------- 193 (400)
T PF03825_consen 152 YLG--------------------ISGTSLIFYIAAILSLLLAGFALFLPKTPPK--RSAKESVK---------------- 193 (400)
T ss_pred hhc--------------------cccccHHHHHHHHHHHHHHHHHHhCCCCccc--cccCCCcc----------------
Confidence 111 1123345555555555555555668887632 00000000
Q ss_pred hhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhc-ccCCcccchhHHHHHHHHHHHH
Q 010194 269 QEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIG-WIPKAKTMNAIEEVYKIARAQT 347 (515)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
+....+.++++|++.. ....+..+...........+.+.++++.| +.... .....
T Consensus 194 -----~~~~~~~~~llk~~~~-------~~Fll~~~l~~~~~~~~~~f~~~yl~~~gg~~~~~------------~g~~~ 249 (400)
T PF03825_consen 194 -----KLLGLDALKLLKNPRF-------LVFLLAAFLIGISHAAYYTFFSIYLQELGGYSGST------------IGILW 249 (400)
T ss_pred -----cccchHHHHHhcCccH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHcccchhhH------------HHHHH
Confidence 0000111222333221 12222223333344445556677777766 33222 22245
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHH---HHHHHhhcCcccccc
Q 010194 348 LIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYS---LTFFFSNFGPNTTTF 424 (515)
Q Consensus 348 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 424 (515)
....++.++.-...+++.+|+|.|+++.++.+..++=..++..... +.+....... +..+...........
T Consensus 250 ~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~~~------~~~~~~~~~~l~q~lhG~tf~~~~~a~~ 323 (400)
T PF03825_consen 250 ALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYFSD------PWPFIVALQLLGQLLHGLTFGLFHAASV 323 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcC------CcHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5677788898899999999999999999999888888877765421 1121111111 122322222344566
Q ss_pred ccccccCchhhhhhhhHHHHHH-hhhhHHHHHHHHHHhhhccCchH------HHHHHHHHHHHHHHHHH
Q 010194 425 VVPAEIFPARLRSTCHGISAAS-GKAGAIVGAFGFLYLADTSGVKK------ALLILGGANFLGMLFTF 486 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~~~l~~~~g~~~------~~~~~~~~~~~~~~~~~ 486 (515)
.++.+..|++.|+++.++++.. ..+|..+|..+.|++.|..|.+. .+.+.+++.++..++..
T Consensus 324 ~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~ 392 (400)
T PF03825_consen 324 RYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFV 392 (400)
T ss_pred HHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999876 46899999999999999877654 34444444444444444
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-19 Score=174.38 Aligned_cols=372 Identities=13% Similarity=0.115 Sum_probs=246.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH-HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccccc
Q 010194 67 DNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRV-YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDY 145 (515)
Q Consensus 67 ~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 145 (515)
.+..++..++..+-.++..|+.|.++|+-|+||. +.....+..+++.+..+.+.. .++...+.-++.-++.+...
T Consensus 69 ~s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~----~~~~~~~l~iia~v~~~~~~ 144 (477)
T PF11700_consen 69 SSLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPG----QWWLALVLFIIANVGYEASN 144 (477)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcc----hHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999997765 555556666677777765321 15555566666667777778
Q ss_pred chhhHhhhhccccccc--------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 010194 146 PLSATIMSEYANKKTR--------------------------GAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIY 199 (515)
Q Consensus 146 ~~~~~~i~e~~~~~~r--------------------------~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~ 199 (515)
....+++.|..+++++ ++..+.-.....+|.++.-++...+....+..
T Consensus 145 vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~------ 218 (477)
T PF11700_consen 145 VFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGST------ 218 (477)
T ss_pred HHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCc------
Confidence 8899999999999888 89999888888888888877776665433321
Q ss_pred CCCCCCccccCCCchHHHHHHHhHHHHH-HHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcC
Q 010194 200 SANPAASTVPEADYIWRIILMFGAIPAL-LTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGK 278 (515)
Q Consensus 200 ~~~~~~~~~~~~~~~wr~~f~~~~~~~~-~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (515)
..+..+-|..+.+.++.-+ ..+..++++||.|+.. ..++.........+
T Consensus 219 ---------~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~-~~~~~~~~~~~g~~-------------------- 268 (477)
T PF11700_consen 219 ---------ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPR-PLPSGSSYLRFGFK-------------------- 268 (477)
T ss_pred ---------cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC-CCCcchhHHHHHHH--------------------
Confidence 1234557888888666544 4566778889887520 11111110001111
Q ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhH
Q 010194 279 NDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPG 357 (515)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (515)
+.++.+|+... .+.+...++.+++..-.......+...+.. .+|+++.+... ..+...+..++|
T Consensus 269 ~l~~t~k~~~~---~~~~~~fLia~~l~~dg~~ti~~~~~i~a~~~lg~s~~~l~~------------~~l~~~i~a~~G 333 (477)
T PF11700_consen 269 RLWRTFKEIRK---LRQLFLFLIAYFLYSDGVNTIISFAGIYATEVLGMSTTQLIV------------FGLVVQIVAIIG 333 (477)
T ss_pred HHHHHHHHHHh---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHH------------HHHHHHHHHHHH
Confidence 11111222111 123333444455444444444444555544 46776655322 666677788899
Q ss_pred HHHHHHHHHhhchh--hHHHHHHHHHHHHHHHHHh--hhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCch
Q 010194 358 YWFTVALIDKIGRF--AIQLMGFFFMTVFMFALAI--PYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPA 433 (515)
Q Consensus 358 ~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 433 (515)
.++.+++.||+|.| +.+........+..+...+ ... .... ...+...+..+..+....+..+..-++.+|+.|+
T Consensus 334 a~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~-~~g~-~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~ 411 (477)
T PF11700_consen 334 ALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPS-FFGL-KSPWEFWVLAVLIGLFMGGIQSASRSLFSRLIPP 411 (477)
T ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhc-ccCc-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCC
Confidence 99999999999988 7766665555333222222 110 0011 1222344444555555666678888999999999
Q ss_pred hhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHHhccccCCCC
Q 010194 434 RLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTFLVPESKGKS 495 (515)
Q Consensus 434 ~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (515)
++.+..+|++...+...+++||.++|.+.+..| .+..+....++.+++.++.+.++..|.++
T Consensus 412 g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~~~g~~ 474 (477)
T PF11700_consen 412 GREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDVEKGRE 474 (477)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccchhhhh
Confidence 999999999999999999999999999999887 78889888888888888887776665543
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=189.80 Aligned_cols=402 Identities=12% Similarity=0.057 Sum_probs=238.9
Q ss_pred HHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----
Q 010194 22 FTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG----- 96 (515)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G----- 96 (515)
...+.++...++..+........+.+.+.+++ |++.++++...+...+...+-.+ +|+++||++
T Consensus 25 ~~~~~~~~~~y~~qGl~~l~~~~~~~~l~~~l----------g~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~r 93 (468)
T TIGR00788 25 RVVLAIGLQVLFVKGIAGLMRLPLSPMLTDDL----------GLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYT 93 (468)
T ss_pred chHHHHHHHHHHHhhHHHHhhhhhhHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCcc
Confidence 34555666677888887444445566677788 99999999999999999999666 999999998
Q ss_pred hhhHHHHHHHHHH-HHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhH---HHHHHHHH
Q 010194 97 RKRVYGMTLMMMV-ICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAF---IAAVFAMQ 172 (515)
Q Consensus 97 rr~~l~~~~~~~~-i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~---~~~~~~~~ 172 (515)
||+.++++.++.+ +.....+..++. .....+.+++.+++.+...++..++..|..+ +++... .+......
T Consensus 94 Rr~~l~~~~~l~~~~~~~~l~~~~~~-----~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~ 167 (468)
T TIGR00788 94 KRWYLVLSGLLGSAILYGLLPGKVSS-----AKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGAS 167 (468)
T ss_pred chHHHHHHHHHHHHHHHHhcccccch-----HHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHH
Confidence 7777777777763 333333333341 3444458999999999999999999999998 544443 33344445
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHH
Q 010194 173 GFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQ 252 (515)
Q Consensus 173 ~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~ 252 (515)
++|.++|+.+++.+.+ ..+||..|++.+...++..+..++++|++.. ...+..++
T Consensus 168 ~~G~~vg~~l~G~l~~-----------------------~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~--~~~~~~~~ 222 (468)
T TIGR00788 168 ATGGLISSLLGGPLLD-----------------------KTLTRILFLITAALLLLQLFVSNLSKERRAF--VRPRIGTY 222 (468)
T ss_pred HHHHHHHHHHHHHHHH-----------------------hcCcchHHHHHHHHHHHHHHHHHhccccccc--cccccccc
Confidence 6899999999998863 3459999999777766666566778886421 00000000
Q ss_pred HHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHH-HHHHHHHHHHHhhhhhHHHhHhcccCCcc
Q 010194 253 AAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVT-WFLLDVAYYSQNLFQKDIFTAIGWIPKAK 331 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (515)
......... ....+..++...+.++.++++.. +..+...+. +.. ........+. ...+..|+++...
T Consensus 223 ~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~i----~~~l~fifl~~~~--~~~~~~~~f~-~~~~~lG~s~~~~ 290 (468)
T TIGR00788 223 LEMNMALLT-----LGVLANVKVQILGLRGAIQLLEI----AKPLIFIFLSYAN--LPGASGSVFC-ATTQCLPGGPSFS 290 (468)
T ss_pred chhhhhhhh-----hhHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHHHhh--cCCCCceeEE-EEcccCCCCcchh
Confidence 000000000 00000000000111111221111 111111111 110 0000000000 1112356666654
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC---CchHHHHHHH
Q 010194 332 TMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP---DHRIGFVVLY 408 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 408 (515)
+. ......++.+++....+++.+|++.|+.+.++.++.+++..........+... ...+......
T Consensus 291 G~------------~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~ 358 (468)
T TIGR00788 291 GM------------SKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDS 358 (468)
T ss_pred hh------------HHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehh
Confidence 44 45556688888888999999999999999888888777665533221111100 1111222222
Q ss_pred HHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-----chHHHHHHHHHHHHH--
Q 010194 409 SLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-----VKKALLILGGANFLG-- 481 (515)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-----~~~~~~~~~~~~~~~-- 481 (515)
.+.....+.... ....++.+..|++.+|+..++.+.+.++|..+++.+.+.+.+..| ++..+....+.++..
T Consensus 359 ~l~~~~~g~~~~-~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~i~i~~~~~l~ 437 (468)
T TIGR00788 359 IIAEVLAQLKFM-PFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLLILGHSLAPLL 437 (468)
T ss_pred HHHHHHHHHHHc-cHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHH
Confidence 222223333333 346788999999999999999999999999999999999999877 665555443333333
Q ss_pred -HHHHHhccc
Q 010194 482 -MLFTFLVPE 490 (515)
Q Consensus 482 -~~~~~~~~~ 490 (515)
..+.+++|+
T Consensus 438 ~l~~~~llP~ 447 (468)
T TIGR00788 438 PLPLLHLLPR 447 (468)
T ss_pred HHHHHHhCCC
Confidence 333335665
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-20 Score=171.19 Aligned_cols=411 Identities=13% Similarity=0.054 Sum_probs=279.0
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
+..++||.++++.++..+.+++.+-.++++.......+ + +....-|..-+|.+.+....+++-|+.|++
T Consensus 38 rVy~rRW~vLl~~slL~~SN~~qWI~ya~i~n~~~~~Y----------g-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~ 106 (480)
T KOG2563|consen 38 RVYPRRWVVLLAFSLLNFSNGMQWIQYAPINNYVNSFY----------G-SSSAADWLSMIYMVVSVPFGFAAMWILDKF 106 (480)
T ss_pred ccchhHhHHHHHHHHHHhcCcchheeehhHHHHHHHHh----------c-chHHHHHHHHHHHHHHHHHhhHHHHhhccc
Confidence 46678999999999999999999988888888888777 7 777888999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHH--HHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMI--TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 173 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~--~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 173 (515)
|-|..++++..+.++|..+-..+....-++.++ ....+..+.+.++-.....-.....-|++++||..+..+-.++..
T Consensus 107 GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~ 186 (480)
T KOG2563|consen 107 GLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGNP 186 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcch
Confidence 999999999999999999887775532222245 788999999998887777777888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHH--HHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccH
Q 010194 174 FGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRI--ILMFGAIPALLTYY-WRMKMPETARYTALVAKNA 250 (515)
Q Consensus 174 ~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~--~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~ 250 (515)
+|.++|.++...+..... ..++..|-. .|+....++.+.++ ..+..++.|+......+..
T Consensus 187 LGvavg~llppilV~~~~-----------------~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~~~ 249 (480)
T KOG2563|consen 187 LGVAVGFLLPPILVPSSK-----------------DSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQAA 249 (480)
T ss_pred HHHHHHhhccceecCCCC-----------------CcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhHhh
Confidence 999999998888753221 123455665 35543333333323 3344444443210100000
Q ss_pred HHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCc
Q 010194 251 KQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKA 330 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (515)
++ +.+..+-.++-...+ .+...++.+......++.....+...+...|+....
T Consensus 250 ~~------------------------~~~f~~si~~~~~n~---~F~il~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~ 302 (480)
T KOG2563|consen 250 LQ------------------------DASFPKSIKSCFKNR---QFIILAICYGIGLGLFNSLSTLLNLALCPSGYEGVF 302 (480)
T ss_pred hh------------------------cCcHHHHHHHHHcCc---cHHHHHHHHhhhHHHHHHHHHHhhhccccccCCccc
Confidence 00 111111112222222 234444444444456666665555444445565544
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchh-hHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHH
Q 010194 331 KTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRF-AIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYS 409 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (515)
.+. ..+...++++++..++|.+.||.+.- ....+......++...+.... ......+.+....
T Consensus 303 aG~------------ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t----~~~~~~viv~~t~ 366 (480)
T KOG2563|consen 303 AGY------------IGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCT----LFLGDSVIVFTTC 366 (480)
T ss_pred cch------------hHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh----ccCCceEehhhhH
Confidence 333 67777788889999999999998753 344444444444422222111 1112333445555
Q ss_pred HHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC----chHHHHHHHHHHHHHHHHH
Q 010194 410 LTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG----VKKALLILGGANFLGMLFT 485 (515)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g----~~~~~~~~~~~~~~~~~~~ 485 (515)
...+++..+..|+...+..|..-|..-++..|+.+..+++-+++-..+.+...+..+ +...-+.+...++++..+.
T Consensus 367 ~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lv 446 (480)
T KOG2563|consen 367 GLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILV 446 (480)
T ss_pred HHHHHhhcCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHH
Confidence 566677777789998898998767888899999999999999999999999988777 5555555666666666666
Q ss_pred HhccccCCCChh
Q 010194 486 FLVPESKGKSLE 497 (515)
Q Consensus 486 ~~~~~~~~~~~~ 497 (515)
.++++..+|...
T Consensus 447 a~~r~~y~R~~~ 458 (480)
T KOG2563|consen 447 AFFRPDYRRLRA 458 (480)
T ss_pred hhhhhhHHhHhh
Confidence 666655444433
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-20 Score=172.20 Aligned_cols=379 Identities=13% Similarity=0.094 Sum_probs=220.9
Q ss_pred hHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH-
Q 010194 31 GFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMM- 108 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~- 108 (515)
.++...+..++.-+..+. +.++. |++.+++|.+.++..+...+.+++.|.++||+|.||-++....+.
T Consensus 15 ~~f~~Ff~~gi~~pF~~iWL~~~~----------GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~ 84 (412)
T PF01306_consen 15 FYFFYFFIWGIFLPFFPIWLTQVA----------GLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILL 84 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcccc----------CCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHH
Confidence 333444445555555544 44457 999999999999999999999999999999999776554333222
Q ss_pred -HHHHHH-hhhc----CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHH
Q 010194 109 -VICSLA-SGLS----FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMV 182 (515)
Q Consensus 109 -~i~~~~-~~~~----~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l 182 (515)
..+... ..+. .|. +...+++-+..|+......|+..+++.++.. +.+.-.|-.-+..++|.+++..+
T Consensus 85 ~l~~pff~~v~~pll~~n~-----~lg~iig~i~l~~~f~~~~~~~Ea~~er~sr--~~~feYG~~R~wGSig~ai~s~~ 157 (412)
T PF01306_consen 85 LLFGPFFIYVFGPLLQSNF-----WLGAIIGGIYLGLVFNAGVPLSEAYAERVSR--RNGFEYGRARMWGSIGFAIASLL 157 (412)
T ss_dssp HTCHHHHHHTHHHHHHTT------HHHHHHTTTTTTTTTTTHHHHHHHHHHHHHH--HHSS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccchHHHHHHHHHHH--HhcCCcchHHHHhhHHHHHHHHH
Confidence 122222 1221 231 3344555555666666666777777766653 23445566667888999999999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhc-CCchhhHHHHhccHHHHHHHHHHHH
Q 010194 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKM-PETARYTALVAKNAKQAAADMSKVL 261 (515)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+|.+.+. +-+..|+++...+++..++.+.. |+.++.....+.+.
T Consensus 158 ~G~L~~i------------------------~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~~----------- 202 (412)
T PF01306_consen 158 AGILFNI------------------------NPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADALG----------- 202 (412)
T ss_dssp HHHHHHH------------------------HHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTSS-----------
T ss_pred hheeeee------------------------CccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhcccc-----------
Confidence 9988643 24677787666665554444333 33332210000000
Q ss_pred HhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHH
Q 010194 262 QVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYK 341 (515)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (515)
+++++.+.++..+....+ .+|...+........+.......+.++... +... .....
T Consensus 203 -----------~~~~~~~~~~~~~l~k~~----~fw~~~l~v~g~~~~Y~vfdqqf~~y~~~~-f~~~------~~g~~- 259 (412)
T PF01306_consen 203 -----------AKKDKVSLKDVLSLFKMR----NFWFFVLFVIGVAAIYDVFDQQFPIYFASF-FQSA------GQGNQ- 259 (412)
T ss_dssp -----------S------HHHHHHHTTSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSH------HHHHH-
T ss_pred -----------cCCCCCcHHHHHHHhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccc------ccChh-
Confidence 000111111111111112 233333333333334444333344444432 1111 11111
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccc
Q 010194 342 IARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNT 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (515)
.-........+..++...+.+++.+|+|.|+.++++..++.+=....++.. +.+.....=.+-..-... ...
T Consensus 260 ~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~-------~~~~i~~~klLH~~e~~l-~lv 331 (412)
T PF01306_consen 260 MYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFAT-------NPWVISLIKLLHALEFPL-LLV 331 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT---------SHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhc-------chHHHHHHHHHHHHHHHH-HHH
Confidence 222256777788888889999999999999999999999988888877654 233322222222222222 223
Q ss_pred cccccccccCchhhhhhhhHHH-HHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 422 TTFVVPAEIFPARLRSTCHGIS-AASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
..+-++.+.+|++..++...+. +...+++.++.+.+.|.+.|+.|++.++++.+.+.+...++.. .+++.+
T Consensus 332 a~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~ 404 (412)
T PF01306_consen 332 AAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDK 404 (412)
T ss_dssp HHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SS
T ss_pred HHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCC
Confidence 4457889999999999999886 5777899999999999999999999999999888887777766 444443
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=164.53 Aligned_cols=396 Identities=13% Similarity=0.069 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhh
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGR 97 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Gr 97 (515)
.+|...+...|+..|-.++.....+.+..+...+. +++.++..++.+.|.....+.++++|++.|| +|-
T Consensus 40 ~hr~m~lv~mc~lgfgsyfcyd~p~alq~~fk~d~----------ni~~akftLlYsvYSwPNvVlcffgGflidr~fgi 109 (459)
T KOG4686|consen 40 GHRFMALVFMCLLGFGSYFCYDAPGALQIDFKLDS----------NIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGI 109 (459)
T ss_pred hhHHHHHHHHHHhcccceeecCCchhhhhhhhccc----------ccceeeeeeeeeeccCCCEEEeeecceeehhhhhh
Confidence 34566666777777777777777788888887777 8889999999999999999999999999997 788
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGIL 177 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~ 177 (515)
|..-++-+....++.++++.-.-. +.+|.++.+||+.|+|.-....+...+..-|+..||.+.++|+.....-+|..
T Consensus 110 r~gtii~~~fv~~GqliFa~Ggi~---~aFw~M~~GRF~FGIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvAR~Gst 186 (459)
T KOG4686|consen 110 RLGTIILCIFVFLGQLIFAAGGIS---HAFWTMLAGRFLFGIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVARLGST 186 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHhchHH---HHHHHHHhhheeeccCchhhhhhhcceeEEEecCccccchhhHHHHHHHhhce
Confidence 876555555566777766553211 12899999999999998877788889999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHH
Q 010194 178 SGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADM 257 (515)
Q Consensus 178 ~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~ 257 (515)
+-..+.+++.+..+.-.+. +.+...|-...+ ....+...++...-+ .+ .++ .+.+
T Consensus 187 vNf~lm~~ly~~~~~~~~~-----------~ghT~LG~~l~~--~~~tc~~slical~l----g~---~D~---rAer-- 241 (459)
T KOG4686|consen 187 VNFLLMPFLYDTMGRMFPG-----------VGHTLLGLWLCF--EVKTCKQSLICALSL----GL---SDD---RAER-- 241 (459)
T ss_pred eeeeecHHHHHHHHHhccc-----------chHHHHHHHHHH--HHHHHHHHHHHHHHh----hh---hhh---HHHH--
Confidence 8777777776655431110 000001111111 111111111111000 00 000 0000
Q ss_pred HHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhH
Q 010194 258 SKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAI 336 (515)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 336 (515)
..+.|... ..++.+......++ ..+|.+.....+.....+......|.++++ .|.++...+.
T Consensus 242 --ilh~e~g~----~Ge~pkLtdv~~f~--------ppfw~~~iicv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~--- 304 (459)
T KOG4686|consen 242 --ILHLEEGF----LGEEPKLTDVNTFY--------PPFWVLVIICVLYYVAWFPFITLGPMFFQKRFGLSAVSAGN--- 304 (459)
T ss_pred --HHhhhcCc----ccCCcccccccccC--------ccHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhCCChhhccc---
Confidence 00000000 00000111111111 123444444445555556566666777765 6777766443
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHH-HHHHHhhhhcccCCCchHHHHHHHHHHHHHh
Q 010194 337 EEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVF-MFALAIPYHHWTLPDHRIGFVVLYSLTFFFS 415 (515)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (515)
+...+..+ ..+..++.|.++||+|++...+.+..+..+. -..+.+.. + +++..+.+..+.....
T Consensus 305 --------i~s~vy~I-sav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--l----sPy~~m~~lGLsysll 369 (459)
T KOG4686|consen 305 --------ILSTVYGI-SAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--L----SPYTSMTFLGLSYSLL 369 (459)
T ss_pred --------hhhhhhhh-hhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--c----cHHHHHHHHhhhHHHH
Confidence 23344444 4456678999999999987766654444333 33333322 1 2333343443333333
Q ss_pred hcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-ch---HHHHHHHHHHHHHHHHHHhc
Q 010194 416 NFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VK---KALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 416 ~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~---~~~~~~~~~~~~~~~~~~~~ 488 (515)
... .|..++.+.|+++.|++.|.+..+.++|-.+.|.+.|.+.|..| |. ..|+..+.+.+.+..+.+.+
T Consensus 370 Acs----lWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 370 ACS----LWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILFYL 442 (459)
T ss_pred HHH----HhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHhhe
Confidence 332 44556778899999999999999999999999999999999766 33 33455555555555555544
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.8e-19 Score=173.96 Aligned_cols=349 Identities=15% Similarity=0.073 Sum_probs=235.8
Q ss_pred HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh----hhhhhhH-HHHHHHHHHHHHHHhhhc
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGD----KMGRKRV-YGMTLMMMVICSLASGLS 118 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----r~Grr~~-l~~~~~~~~i~~~~~~~~ 118 (515)
...+...+.. ++++...|.+..+..+-.++..|+.|.++| |+||||. ++.+..+.+++.+++...
T Consensus 23 ~~~~f~~~~~----------gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~ 92 (428)
T PF13347_consen 23 YLLYFYTDVL----------GLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSP 92 (428)
T ss_pred HHHHHHHHHc----------CCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhcc
Confidence 4456666777 999999999999999999999999999999 8998776 567888888888777766
Q ss_pred -C-CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010194 119 -F-GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFP 195 (515)
Q Consensus 119 -~-~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 195 (515)
+ +.+.......+.+..++..++.........++..|..+ +++|.+..+.-..+..+|.++...+.+.+...++.
T Consensus 93 ~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~--- 169 (428)
T PF13347_consen 93 PPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGG--- 169 (428)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---
Confidence 4 21111113446777777899999999999999999997 57899999999999999998788887777665553
Q ss_pred CCccCCCCCCccccCCC-chHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHH
Q 010194 196 APIYSANPAASTVPEAD-YIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVE 273 (515)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
.+. .+|++..++.+++.++..+ ..+..+|.++. . .+
T Consensus 170 --------------~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~~-----~-----------------------~~ 207 (428)
T PF13347_consen 170 --------------GDTSNGYRWMALVLAIVGLVFFLITFFFVKERSVE-----V-----------------------TE 207 (428)
T ss_pred --------------CccchHHHHHHHHHHHHHHHHhhhhhheeeecccc-----c-----------------------cc
Confidence 122 3799999987777666544 44556772111 0 00
Q ss_pred HhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhh
Q 010194 274 QEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCS 353 (515)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (515)
++++.+.++.++....++..+.++...+. ............+++.+..--.+.. .........+.
T Consensus 208 ~~~~~~~~~~~~~~~~nr~~~~l~~~~~~---~~~~~~~~~~~~~y~~~~vl~~~~~------------~~~~~~~~~~~ 272 (428)
T PF13347_consen 208 QEKKISLRDSLRSLFRNRPFRILLLAFFL---QWLAFALMNTFLPYYFTYVLGNEGL------------ISIFMLIFFVA 272 (428)
T ss_pred cccccccccchhhhcccchHHHHHHHHHH---HHhhhhhhhhHHHHHHHHHhcCchh------------hHHHHHHHHHH
Confidence 11222333333333333322222222222 2222222333333444331111111 11244566677
Q ss_pred hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCch
Q 010194 354 TVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPA 433 (515)
Q Consensus 354 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 433 (515)
.+++.++.++++||+|+|+.+..+..+.+++.+.+.+... .+.....+..+..+..........+++.+|..+.
T Consensus 273 ~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~ 346 (428)
T PF13347_consen 273 SIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------GSPWLVLILFILAGIGYGAFFVIPWAMLADVIDY 346 (428)
T ss_pred HHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------hhHHHHHHHHHHhHhhhcccccccccccccchhh
Confidence 7888889999999999999999999998888887766541 2334444444444444455567788888888763
Q ss_pred -------hhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCch
Q 010194 434 -------RLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVK 468 (515)
Q Consensus 434 -------~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~ 468 (515)
+..|..+|+.+....++..+++.+.+.+.+..||.
T Consensus 347 ~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 347 DEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 44688999999999999999999999998866543
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-18 Score=166.79 Aligned_cols=336 Identities=11% Similarity=0.009 Sum_probs=200.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhH-HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDK----MGRKRV-YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLG 138 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (515)
+++...+|.+..+.-+--++..|+.|.++|| +||||. ++++.+..+++.+++...++.+....+..+++.-++..
T Consensus 41 Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~ 120 (460)
T PRK11462 41 GIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLT 120 (460)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 798765 55677788887776655554222222345666777778
Q ss_pred hccccccchhhHhhhhccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHH
Q 010194 139 FGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRI 217 (515)
Q Consensus 139 ~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 217 (515)
++.......-.++..|..+ ++||++..++...+..+|..+++.+...+....+.. ....+|+.
T Consensus 121 ~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~----------------~~~~g~~~ 184 (460)
T PRK11462 121 LLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGD----------------NKPLGFQG 184 (460)
T ss_pred HHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------chhhhHHH
Confidence 8888888888899999997 788999999999999999988888877665554420 12357888
Q ss_pred HHHHhHHHHHHHHHHH-HhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHH
Q 010194 218 ILMFGAIPALLTYYWR-MKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHL 296 (515)
Q Consensus 218 ~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
...+.++++++..... ...+|.++. ++ ++.+.++.++....++.++.+
T Consensus 185 ~~~i~~ii~~i~~~i~~~~~kE~~~~-----~~--------------------------~~~~~~~~l~~~~~Nk~~~~l 233 (460)
T PRK11462 185 GIAVLSVVAFMMLAFCFFTTKERVEA-----PP--------------------------TTTSMREDLRDIWQNDQWRIV 233 (460)
T ss_pred HHHHHHHHHHHHHHHHHhcceeccCC-----Cc--------------------------cCCCHHHHHHHHhCChHHHHH
Confidence 7777666655544333 334553221 00 001112222222222222222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLM 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 376 (515)
....+..............|...+. .+ .+ . ..........+..+++.++++++.||+++|+....
T Consensus 234 ~~~~~~~~~~~~~~~~~~~y~~~y~--~g-~~------~------~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~ 298 (460)
T PRK11462 234 GLLTIFNILAVCVRGGAMMYYVTWI--LG-TP------E------VFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWW 298 (460)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhhhh--cC-Ch------H------HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 2222222222122222222222221 11 10 0 01123445566777888899999999999988765
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCc-------hhhhhhhhHHHHHHhhh
Q 010194 377 GFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFP-------ARLRSTCHGISAASGKA 449 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~~ 449 (515)
+..+..+..+++.+.. ........+...+ .+.......+..+++..|..+ .+..|...+.......+
T Consensus 299 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~l-~g~~~~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Kl 372 (460)
T PRK11462 299 TNALLAVISLAMFFVP-----MQASITMFVFIFV-IGVLHQLVTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKL 372 (460)
T ss_pred HHHHHHHHHHHHHHhc-----hhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHH
Confidence 5444333333222211 1111122222222 222222234445666666654 33345556777789999
Q ss_pred hHHHHHHHHHHhhhccCc
Q 010194 450 GAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 450 g~~i~~~~~~~l~~~~g~ 467 (515)
|..+++.+.|.+.+..||
T Consensus 373 g~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 373 GLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHcCC
Confidence 999999999999876555
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.4e-18 Score=168.44 Aligned_cols=340 Identities=11% Similarity=0.013 Sum_probs=188.9
Q ss_pred HHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh----hhhhHH-HHHHHHHHHHHHHhhhcC
Q 010194 45 VTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM----GRKRVY-GMTLMMMVICSLASGLSF 119 (515)
Q Consensus 45 ~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~----Grr~~l-~~~~~~~~i~~~~~~~~~ 119 (515)
+.+.+.+.+ |++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+..++....+
T Consensus 31 l~~y~~~~~----------gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~ 100 (448)
T PRK09848 31 LLSYYTDVA----------GVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVP 100 (448)
T ss_pred HHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCc
Confidence 445666667 89999999999999999999999999999996 777754 556555554444432222
Q ss_pred -CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccc-cccchhHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhc
Q 010194 120 -GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGF-----GILSGGMVAIIVSAAFKA 192 (515)
Q Consensus 120 -~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~-----G~~~g~~l~~~l~~~~~~ 192 (515)
..........+++..++.+++.+...+...++..|..+ +++|.+..+.-..+.++ +..++|.++... +.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~~~----g~ 176 (448)
T PRK09848 101 TDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKNSS----PE 176 (448)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CC
Confidence 11011113344555667788888888777788777764 46788877666544343 344444443321 10
Q ss_pred CCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhh
Q 010194 193 NFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEK 271 (515)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (515)
....+|.....+.++.+++. ++.....||+++. +.
T Consensus 177 -----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~-----~~---------------------- 212 (448)
T PRK09848 177 -----------------EMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR-----IV---------------------- 212 (448)
T ss_pred -----------------chhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC-----Cc----------------------
Confidence 00111222222222232222 2223334554321 00
Q ss_pred HHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHH
Q 010194 272 VEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIA 350 (515)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
++.+.++.++....++ .+....+..++....+.......+.++++ .+.++ ..+.......
T Consensus 213 ----~~~~~~~~~~~l~~n~---~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~------------~~~~~~~~~~ 273 (448)
T PRK09848 213 ----AQPSLKISLQTLKRNR---PLFMLCIGALCVLISTFAVSASSLFYVRYVLNDTG------------LFTVLVLVQN 273 (448)
T ss_pred ----cCCCHHHHHHHHhCCc---hHHHHHHHHHHHHHHHHHHhhhheeeEeeecCChH------------HHHHHHHHHH
Confidence 0001111111111111 12222222222223333333334444333 12111 1122233344
Q ss_pred HhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccccc
Q 010194 351 LCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEI 430 (515)
Q Consensus 351 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (515)
.++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+.. ....+......+..+.+.....+..+++..|.
T Consensus 274 ~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~------~~~~~~~~~~~~l~g~G~~~~~~~~~al~~~~ 347 (448)
T PRK09848 274 LVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVS------VWSLPVALVALAIASIGQGVTMTVMWALEADT 347 (448)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcC------chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556677888999999999999999988887777766554321 11222222222333333333455666777777
Q ss_pred Cchh-------hhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCc
Q 010194 431 FPAR-------LRSTCHGISAASGKAGAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 431 ~p~~-------~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~ 467 (515)
.|.+ .+|..+|+.+....+|..+++.+.+.+.+..||
T Consensus 348 ~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 348 VEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred hhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7643 459999999999999999999999998876665
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.9e-18 Score=159.22 Aligned_cols=341 Identities=14% Similarity=0.077 Sum_probs=234.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhH-HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhh
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDK----MGRKRV-YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLG 138 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (515)
|++....|.+..+.-+--++.-|+.|.++|| +||||. ++.+.+..++.+.++-.+++.+........++..++.+
T Consensus 44 Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~ 123 (467)
T COG2211 44 GLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLG 123 (467)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHH
Confidence 8999999999999999999999999999995 888655 77788999999999888886443344677888889999
Q ss_pred hccccccchhhHhhhhccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHH
Q 010194 139 FGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRI 217 (515)
Q Consensus 139 ~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~ 217 (515)
++.......-.++..|+.+ ++||.+..+.-+.+.++|..+...+...+....+.+ +...||+.
T Consensus 124 l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~----------------~~~~g~~~ 187 (467)
T COG2211 124 LGYTLVNIPYGALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGG----------------DKALGYQG 187 (467)
T ss_pred HHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----------------cchhhHHH
Confidence 9999999999999999985 788999999999999999999888888887777641 23678999
Q ss_pred HHHHhHHHHHHHHHHH-HhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHH
Q 010194 218 ILMFGAIPALLTYYWR-MKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHL 296 (515)
Q Consensus 218 ~f~~~~~~~~~~~~~~-~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (515)
.-++.++.+++..+.+ +..+|.+... . .. +++.+.+.++.+.....++.++..
T Consensus 188 ~~~~~~vi~~i~~l~~~~~v~ER~~~~--~-~~-----------------------~~~~~~~~~~~~~~~~~Nrp~~~~ 241 (467)
T COG2211 188 TALVLGVIGVILLLFCFFNVKERVVET--Q-PT-----------------------KTGVKLKLKDSFLLIFKNRPLLLL 241 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccCcc--c-cC-----------------------cccccccHHHHHHHHHccchHHHH
Confidence 8888777777665544 4466654310 0 00 001112222222222223322222
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
+. ...+.............++.+. +|... ............+.+++.++..++.+|+|+|++..
T Consensus 242 l~---~~l~~~~~~~i~~s~~~yy~~y~lg~~~------------l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~ 306 (467)
T COG2211 242 LL---MNLLLFIAFNIRGSIMVYYVTYVLGDPE------------LFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFL 306 (467)
T ss_pred HH---HHHHHHHHHHHHhhhhheeEEEEcCChH------------HHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHH
Confidence 22 2222222222222222222211 11111 11222455555666667889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCc-------hhhhhhhhHHHHHHhh
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFP-------ARLRSTCHGISAASGK 448 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-------~~~~~~~~g~~~~~~~ 448 (515)
++.++..++.+++.+.. .+....+++..+..+.......+..|++.+|..+ .+..|...|...++.-
T Consensus 307 ~~~~~~~i~~~~~~f~~------~~~~~l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K 380 (467)
T COG2211 307 IGLLLLAVGYLLLYFTP------AGSVVLIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRK 380 (467)
T ss_pred HHHHHHHHHHHHHHhhc------CcchHHHHHHHHHHHHHhhccccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHH
Confidence 99888888887776544 2334444455445445555567888999988864 3556888999999999
Q ss_pred hhHHHHHHHHHHhhhccCc
Q 010194 449 AGAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 449 ~g~~i~~~~~~~l~~~~g~ 467 (515)
+|.+++..+.|++++..||
T Consensus 381 ~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 381 LGLALAGFIPGWILGAIGY 399 (467)
T ss_pred HHHHHHHHHHHHHHHHcCC
Confidence 9999999999999886664
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=167.15 Aligned_cols=417 Identities=16% Similarity=0.150 Sum_probs=248.3
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
..++.+|+.+.+..+..++.....+++.+..-+..+++ |.+.+.+..|++.++..++.+++++..|+...|.
T Consensus 27 ~~~~t~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~l--------D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~ 98 (488)
T KOG2325|consen 27 DERKTNWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKL--------DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKT 98 (488)
T ss_pred cccCCchHhHHHHHHHHHHHhhhheEEEeecchhhhhc--------CCCCCcchhhHHHHHHHHHHHhcchhhccccccc
Confidence 34456788888888888888888777666554444443 1277888999999999999999999999999999
Q ss_pred hh-hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH
Q 010194 96 GR-KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF 174 (515)
Q Consensus 96 Gr-r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 174 (515)
+. |+.++.|.++..+++++....... +.+.-+.++++|++.|+|.+. .....+|+++....++|.++++....+..+
T Consensus 99 ~~~k~Pli~s~ii~~~g~llY~~l~~~-~~~~~y~mL~~R~l~Gvg~~n-~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vl 176 (488)
T KOG2325|consen 99 GSVKKPLIVSFLIAIIGNLLYLALAYV-PNGVKYLMLVARILTGVGVGN-FAVLRAYIADASTVEDRPRAFAATSGGFVL 176 (488)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHHHHcCcCccc-HHHHHHHHHhccCccchHHHHHHhhhHHHH
Confidence 97 888999999999999988332211 111368999999999999775 688999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCc-cCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHH
Q 010194 175 GILSGGMVAIIVSAAFKANFPAPI-YSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQ 252 (515)
Q Consensus 175 G~~~g~~l~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~ 252 (515)
|.++||.++..+......+....+ ...| -+..+-|+.++..++.++ +.++++|.++.. .+++.++
T Consensus 177 g~ilGp~~q~~f~~Lg~~G~~i~~~~~~n-----------~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~--~~~~~~~ 243 (488)
T KOG2325|consen 177 GIILGPTIQLAFTPLGEKGFMILPGLIFN-----------MYTAPAWLMAILWIIYIVIILFFFKEVYRGI--IDKKKRS 243 (488)
T ss_pred HHHHhHHHHHHHhhhcCCceEEcCcceEE-----------ecchHHHHHHHHHHHHHHHHHhheeecccCc--ccccccc
Confidence 999999999888654332211111 1111 134455666666666443 446677776541 1111000
Q ss_pred HHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHH-HhhhhhHHHhHhcccCCcc
Q 010194 253 AAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYS-QNLFQKDIFTAIGWIPKAK 331 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 331 (515)
. ++++.+.+ ..+.+ +..+...+.+.+..+...+.+.. .....+......+|..++.
T Consensus 244 ~------------~~~~~~~~---------~~~~~--~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~a 300 (488)
T KOG2325|consen 244 V------------EEEKSDIE---------KVKKP--KLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEA 300 (488)
T ss_pred c------------hhhccchh---------hhccC--ChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchH
Confidence 0 00000000 00111 11112334444444444444444 4444455555567765542
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-HhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC------------
Q 010194 332 TMNAIEEVYKIARAQTLIALCSTVPGYWFTVALI-DKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP------------ 398 (515)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 398 (515)
-. ..+..... .++..+.-.+...+.. .++.+|+.+..+.++...+..+..........+
T Consensus 301 v~-------~~gi~~~~-~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~ 372 (488)
T KOG2325|consen 301 VL-------YNGITLSI-SGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCD 372 (488)
T ss_pred HH-------hhhhHHHH-HHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcC
Confidence 21 12222222 2222222211222222 233345555555444444433332221111000
Q ss_pred C------------chHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC
Q 010194 399 D------------HRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG 466 (515)
Q Consensus 399 ~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g 466 (515)
. +.+.......+..+...-.......+.-+|...++.++++.+++......+..++|.+........|
T Consensus 373 ~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g 452 (488)
T KOG2325|consen 373 FEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSG 452 (488)
T ss_pred cccchhhccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcC
Confidence 0 0001111111111111111122344566888889999999999999999999999999999998899
Q ss_pred chHHHHHHHHHHHHHHHHHH
Q 010194 467 VKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~ 486 (515)
++..+.+..+..++...++.
T Consensus 453 ~~~v~~~~~~~~l~~~~l~~ 472 (488)
T KOG2325|consen 453 PRPVWIILLCLLLVVAALWI 472 (488)
T ss_pred ccHHHHHHHHHHHHHHHHHH
Confidence 99888877766666655554
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.3e-17 Score=154.50 Aligned_cols=287 Identities=14% Similarity=0.061 Sum_probs=181.9
Q ss_pred HHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCc
Q 010194 127 MITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAAS 206 (515)
Q Consensus 127 ~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~ 206 (515)
++.++++-++.|.|.+...+..+.++++..|++++.+.+++.+...++|..++|.+++.+......+. +. .+.
T Consensus 10 ~~~~l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~-----~~--~~~ 82 (310)
T TIGR01272 10 YVLFLGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDL-----SM--QVA 82 (310)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcch-----hh--hhh
Confidence 89999999999999999999999999999999999999999999999999999999998874321000 00 000
Q ss_pred cccCCCchHHHHHHHhHHHHHHHHHHHHh--cCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhh
Q 010194 207 TVPEADYIWRIILMFGAIPALLTYYWRMK--MPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLF 284 (515)
Q Consensus 207 ~~~~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (515)
....+...|+++|++.+...++..+.+.+ +||.++. +.++. .+++..+.++.+
T Consensus 83 ~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~~------~~~~~-------------------~~~~~~~~~~~~ 137 (310)
T TIGR01272 83 TANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQEA------DVARV-------------------SSGDTTQKTSAF 137 (310)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcc------ccccc-------------------ccccccchhhHH
Confidence 00011246999999654444433333333 3443211 00000 000000001111
Q ss_pred hhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHh---cccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 010194 285 SAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAI---GWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFT 361 (515)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (515)
+ ++ .++...+..++..........|.+.|+.+. ++++.. +.........+.++|++++
T Consensus 138 ~----~~---~~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~------------a~~~~s~~~~~~~iGr~~~ 198 (310)
T TIGR01272 138 Q----FT---HLVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQ------------AAHFTAYTWGGAMVGRFIG 198 (310)
T ss_pred h----hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHH------------HHHHHHHHHHHHHHHHHHH
Confidence 1 11 222333444444445666677778887642 444333 2236677778889999999
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhH
Q 010194 362 VALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHG 441 (515)
Q Consensus 362 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 441 (515)
+++.||+++|+.+..+..+..++.++..... .... .... ...+++.....|...+...+..|+ ..+++.+
T Consensus 199 ~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~-------~~~~-~~~~-~l~g~~~s~i~P~~~s~a~~~~~~-~~~~asa 268 (310)
T TIGR01272 199 SAVMPMISQGRYLAFNAFLAVLLSIGAALTH-------GYVA-MWFV-LALGLFNSIMFPTIFSLALNALGR-HTSQGSG 268 (310)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcC-------CHHH-HHHH-HHHHHHHHHHHHHHHHHHHhhhhh-hhhhhHH
Confidence 9999999999988877776666654433221 1111 1222 233344444567777788888774 4566777
Q ss_pred HHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHH
Q 010194 442 ISAASGKAGAIVGAFGFLYLADTSGVKKALLILG 475 (515)
Q Consensus 442 ~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~ 475 (515)
+. ..+.+|+++.|.+.|.+.|..|.+.++++..
T Consensus 269 i~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 269 IL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred HH-HHHHhcchHHHHHHHHHHHhccchHHHHHHH
Confidence 75 5678999999999999999989888876443
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.3e-18 Score=153.76 Aligned_cols=372 Identities=12% Similarity=0.111 Sum_probs=238.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH-HHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRV-YGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 65 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~-l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
-+.+..+...++..+..++.+|+.|.++|+.|+||. +-+...+..++.++..++++. ..++..++.-.+..++...
T Consensus 55 ~~~a~~gy~~aia~llia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~---s~~~~~l~~~il~~i~~~~ 131 (438)
T COG2270 55 SSTAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPG---SYLLLLLLFLILASIGFEF 131 (438)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHHHhCCC---chHHHHHHHHHHHHHhcch
Confidence 345678899999999999999999999999997655 666677777777777777762 1167778888888999998
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFK-ANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
....-.+++.+..++++-++..++-.....+|..+.-+..-......+ ...+..-..+ .+.+...=|..+.+.
T Consensus 132 s~Vfyds~L~~~~~k~~~~riS~lg~~~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l------~~~~~~~~ri~~~l~ 205 (438)
T COG2270 132 SNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLGFALGQQTGITIILLGL------PPADGEDVRITGLLA 205 (438)
T ss_pred hheehhhHhhhhcCccccCcccccccccccccchHHHHHHHHHHhcccccceeEEeecc------CccccccchhHHHHH
Confidence 889999999999999988888887777677777665555322211110 0000000111 123445678888886
Q ss_pred HHHHHH-HHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHH
Q 010194 223 AIPALL-TYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTV 301 (515)
Q Consensus 223 ~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (515)
++-.++ .+.+++..+|.++.. .+..+.-.+.. ++.++.+|+...++....++..
T Consensus 206 A~W~li~~iPm~~~v~~~~~~~---~~~~~~l~~g~--------------------k~L~~t~k~i~~~~~i~~FLiA-- 260 (438)
T COG2270 206 ALWWLLFALPMILNVHDAEKIS---SPPPTALRNGF--------------------KELKSTFKEIRGRKNLVLFLIA-- 260 (438)
T ss_pred HHHHHHHHhHHHhccccccccc---ccchHHHHHHH--------------------HHHHHHHHHHhcccchHHHHHH--
Confidence 665554 555667777765320 00000000000 1111222222223322222222
Q ss_pred HHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHH
Q 010194 302 TWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFF 380 (515)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 380 (515)
.+...=.......+...+-. .+|++..+... ......+..++|+++.|++.||+|.|+++..+.++
T Consensus 261 -~~~~~DGv~til~~~~~fg~~~~gls~~~lll------------~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi 327 (438)
T COG2270 261 -RFFYIDGVNTILAMGGVFGAADLGLSSTELLL------------IGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVI 327 (438)
T ss_pred -HHHHHhhHHHHHHHHHHHHHHHcCccHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHH
Confidence 22221122223333333333 46776655333 56666777888999999999999999998888877
Q ss_pred HHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 010194 381 MTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLY 460 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 460 (515)
..+..+...... ... -.....+..+.+..+.++..-++..++.|+++.++..|+++..+...++++|.+.+.
T Consensus 328 ~~~~~~~~~~~~-------~~~-~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v 399 (438)
T COG2270 328 LSIAALYLIFLE-------GEL-DFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAV 399 (438)
T ss_pred HHHHHHHHHHcc-------ccH-HHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHH
Confidence 776666554433 112 222333444444455577788899999999999999999999999999999999999
Q ss_pred hhhccC-chHHHHHHHHHHHHHHHHHHhcccc
Q 010194 461 LADTSG-VKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 461 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
+.+..| .+..+....++.+++.+..+..|+.
T Consensus 400 ~t~iTg~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 400 ITQITGSSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHhcchhhHHHHHHHHHHhhHhhEEeecCC
Confidence 988665 4566666666666776666566654
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-16 Score=147.79 Aligned_cols=415 Identities=12% Similarity=0.075 Sum_probs=247.0
Q ss_pred HHHHHhHHHHHHhhhHH-HHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHH
Q 010194 26 VIAGMGFFTDAYDLFCI-SLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVYGM 103 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~ 103 (515)
..++..-+-.-++.+-. +++.-++..++ .+. .+.++++..-+.+.|..-.-+..+++|+++|| +|+|+++.+
T Consensus 24 ~~if~vE~WERFsyYGmraiL~~Yl~~~~----~~g--Lg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~l 97 (498)
T COG3104 24 YLIFFVELWERFSYYGMRAILILYLYYQL----GDG--LGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVL 97 (498)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHhc----ccc--CCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence 34444444444443333 33344455555 111 35899999888888888888999999999999 699999999
Q ss_pred HHHHHHHHHHHhhhcC--CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccc--cchhHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSF--GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKK--TRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~--~r~~~~~~~~~~~~~G~~~g 179 (515)
|.++..+|.++.+... + ...++++-.+.++|.|..-+....++.|.+|++ +|-..+++++++.++|..++
T Consensus 98 Gail~~iGh~~L~~~~~~~------~~gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~ 171 (498)
T COG3104 98 GAILMAIGHLVLAISSVSG------PGGLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIA 171 (498)
T ss_pred HHHHHHHHHHHHhcccccc------ccHHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHH
Confidence 9999999999999884 4 578899999999999999999999999999864 36778899999999999999
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCC----chhhHHHHhccHHHHHH
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPE----TARYTALVAKNAKQAAA 255 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e----~p~~~~~~~~~~~~~~~ 255 (515)
|++.+++. +..||...|.++++-....++.....+. ++...+....+..+...
T Consensus 172 p~i~~~~~-----------------------~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~ 228 (498)
T COG3104 172 PIITGLLA-----------------------INYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLP 228 (498)
T ss_pred HHHHHHHH-----------------------HhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhh
Confidence 99999996 4566999999988877776665544332 11000000111111111
Q ss_pred HHHHH----HHhh-----hhHhhhhH--------HH---hhcCCcchhhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 010194 256 DMSKV----LQVE-----LEAEQEKV--------EQ---EKGKNDFGLFS-AKFVRRHGLHLIGTTVTWFLLDVAYYSQN 314 (515)
Q Consensus 256 ~~~~~----~~~~-----~~~~~~~~--------~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (515)
..... .... ..+..... +. .+.....+... +++.....+.++...+.|.+..-......
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~ 308 (498)
T COG3104 229 VLGGLVVMILAALLTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLN 308 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence 11000 0000 00000000 00 00001111010 11111111122222233333222222233
Q ss_pred hhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchh-------hHHHHHHHHHHHHHHH
Q 010194 315 LFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRF-------AIQLMGFFFMTVFMFA 387 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~ 387 (515)
.+.....+. ++ .+.+. . ....-....+..++..++..++..|.+++ .-.-.+..+++.++++
T Consensus 309 ~~a~~~v~~-~~----~g~~v-p-----~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~ 377 (498)
T COG3104 309 LYADRNVNR-QI----FGFEV-P-----PAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLI 377 (498)
T ss_pred HHHHHhhcc-cc----cceec-C-----HHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 333222221 10 10000 0 00133334444445555666666664332 2234666666666666
Q ss_pred HHhhhhccc--CCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHH-----
Q 010194 388 LAIPYHHWT--LPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLY----- 460 (515)
Q Consensus 388 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~----- 460 (515)
+........ ....+.++.+...++..++.....|+..+++....|+...+..++........++.++..+.+.
T Consensus 378 l~~~~~~~~~~~~~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~ 457 (498)
T COG3104 378 LLLAGIWFGGPSGLVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTD 457 (498)
T ss_pred HHHHHHhhcCCCCCcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccc
Confidence 665522222 3335667777777888889999999999999999999999999999888888888887777663
Q ss_pred -hhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 461 -LADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 461 -l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
..+.......|..++...++..+..+
T Consensus 458 ~~~~~~~~~~~F~~~g~v~i~~~~~~~ 484 (498)
T COG3104 458 PAYTAFIEGRVFGTIGVVAIVIGILLL 484 (498)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 22334455667777666666555544
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.3e-16 Score=153.02 Aligned_cols=404 Identities=13% Similarity=0.159 Sum_probs=267.2
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
.+.++++..+.+++....+...+..+.+.| +++.++.|++.+.+-++..+...+..+..-|..|-+.+-+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF----------~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~ 167 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRF----------KISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGI 167 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhc----------CCCCCcceeEeeecccchhhhhHhHHHhccccCccceeee
Confidence 455666777778877788888999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC------------------CC---------------------------C-chhHHHHHHHHHHHh
Q 010194 104 TLMMMVICSLASGLSF------------------GK---------------------------E-PKAVMITLCFFRFWL 137 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~------------------~~---------------------------~-~~~~~~~l~~~r~l~ 137 (515)
|+++++++++++++-+ +. . ....+..++++.++.
T Consensus 168 G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~ 247 (735)
T KOG3626|consen 168 GLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLL 247 (735)
T ss_pred chhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHh
Confidence 9999999999987630 00 0 001245789999999
Q ss_pred hhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCc--hH
Q 010194 138 GFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADY--IW 215 (515)
Q Consensus 138 G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~w 215 (515)
|+|....++...+|+-|...+++-+..+|+......+|.++|.++++++.....+.. ..+...+| .+.+| .|
T Consensus 248 GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~-~~~~~it~-----~DPrWIGAW 321 (735)
T KOG3626|consen 248 GIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFG-LSPIGITP-----TDPRWIGAW 321 (735)
T ss_pred hcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccc-cCCCCCCC-----CCcchhhHH
Confidence 999999999999999999999999999999999999999999999999987655321 12222222 22222 47
Q ss_pred HHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHH
Q 010194 216 RIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLH 295 (515)
Q Consensus 216 r~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (515)
..-|++.+.+.++..+.++++|...+.. +++...++ .+.. ..+.+.++...+..+..++..+.....-....
T Consensus 322 WlGFLi~g~~~~~~a~p~f~fPk~lp~~--~~~~~~~~---~~~~---k~~~~~~~~~~~~~~~ikdfp~s~~~ll~N~i 393 (735)
T KOG3626|consen 322 WLGFLICGALLLFSAVPLFFFPKELPKS--QKRKRARD---LHVL---KTESGGAKSDKTFGKKIKDFPKSIKRLLSNPI 393 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCccc--cccchhhh---hccc---ccccccccCCcchhhhHHHHHHHHHHHhcCch
Confidence 7777777777777777777777664321 11000000 0000 00000000111111122333333222223345
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc--hhh
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIG--RFA 372 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~ 372 (515)
++...+...+....+.+...|+|.|++. +|.++.. +..+...+...+..+|.+++|++.+|+. .|.
T Consensus 394 f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~-----------An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~ 462 (735)
T KOG3626|consen 394 FMLVVLASVIESLAITGYITFLPKYLETQFGISASL-----------ANILTGSIGVPAAAVGIFLGGLIIKKFKLSARG 462 (735)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHH-----------HHHHhhhhhhhhhhhhhhccceeeeeecccHHH
Confidence 6777777777788889999999999987 4444333 2333445556666778889999999975 344
Q ss_pred HHHHHHHHHHHHHHH---HHhhhh------------------cc-c----------------------------------
Q 010194 373 IQLMGFFFMTVFMFA---LAIPYH------------------HW-T---------------------------------- 396 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~---~~~~~~------------------~~-~---------------------------------- 396 (515)
...+..+...++++. ..+... .. .
T Consensus 463 ~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~SpChA 542 (735)
T KOG3626|consen 463 AAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFSPCHA 542 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeChhhh
Confidence 443333333333333 111100 00 0
Q ss_pred -------CC------------C--------------------chHHHHHHHHHHHHHhhcCccccccccccccCchhhhh
Q 010194 397 -------LP------------D--------------------HRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRS 437 (515)
Q Consensus 397 -------~~------------~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 437 (515)
.. . ....+++++++..+....+. ...+.++.+.+|+|.|.
T Consensus 543 GC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~-~p~~~i~LR~V~~e~ks 621 (735)
T KOG3626|consen 543 GCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGA-VPGMLIVLRCVPPEEKS 621 (735)
T ss_pred CCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhcc-CcceEEEEEccCchhch
Confidence 00 0 01223333444444444443 34556778999999999
Q ss_pred hhhHHHHHHhhh-hHHHHHHHHHHhhh
Q 010194 438 TCHGISAASGKA-GAIVGAFGFLYLAD 463 (515)
Q Consensus 438 ~~~g~~~~~~~~-g~~i~~~~~~~l~~ 463 (515)
.++|+..++.++ |.+-+|+++|++.|
T Consensus 622 ~AlG~~~~~irllg~IPsPIifG~~ID 648 (735)
T KOG3626|consen 622 FALGFQWMLIRLLGFIPSPIIFGAVID 648 (735)
T ss_pred hhhHHHHHHHHHHhcCCchHhhhhhHh
Confidence 999999877765 77889999999998
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-18 Score=171.34 Aligned_cols=408 Identities=14% Similarity=0.137 Sum_probs=3.0
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMM 107 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~ 107 (515)
.++..+.+..........+..+.+.| +++.++.|++.+.+-++..+..++..++.+|..|-|.+-.|.++
T Consensus 8 ~~~~~~~q~~~~g~~~~~lttiErRF----------~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~ 77 (539)
T PF03137_consen 8 LCLLGLFQMMVSGYVNSSLTTIERRF----------GLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALL 77 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHH
Confidence 33444445666677778889999999 99999999999999999999999999999999888999999999
Q ss_pred HHHHHHHhhhc----CCCC----------------------------------------chhHHHHHHHHHHHhhhcccc
Q 010194 108 MVICSLASGLS----FGKE----------------------------------------PKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 108 ~~i~~~~~~~~----~~~~----------------------------------------~~~~~~~l~~~r~l~G~~~g~ 143 (515)
++++++++++= ..|. ....+..++++.++.|+|...
T Consensus 78 ~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~p 157 (539)
T PF03137_consen 78 MGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATP 157 (539)
T ss_dssp --------------------------------------------------------------------------SSS---
T ss_pred HHHHHHHHhccHhhcCCCccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccC
Confidence 99999988751 1100 011256789999999999999
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC--ccCCCCCCccccCCC-c-hHHHHH
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAP--IYSANPAASTVPEAD-Y-IWRIIL 219 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~-~-~wr~~f 219 (515)
.++...+|+-|..++++-+..+|+......+|.++|.++++.+.....+....+ ..+.+| .+.+ . .|..-|
T Consensus 158 l~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p-----~dp~WvGAWWLGf 232 (539)
T PF03137_consen 158 LYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGITP-----SDPRWVGAWWLGF 232 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCCCC-----CCccHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876543221111 112222 1111 1 255555
Q ss_pred HHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHH
Q 010194 220 MFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGT 299 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
++.++..++..+.++++|+.-+.....++.++.+.++.++...+ +.++++..+......++.++.....-.++.++..
T Consensus 233 li~g~~~~l~aipl~~FPk~lp~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~df~~~l~~Ll~Np~f~~~ 310 (539)
T PF03137_consen 233 LICGILLFLSAIPLFFFPKKLPGTSERQEEKESSERKEEDSDKD--SFKDPKSKKSFGKSIKDFPKALKRLLTNPVFMCL 310 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHcCCccCCCcccccchhhhhhcchhhhhhh--cccccccccchhhhhhhHHHHHHHHhcChHHHHH
Confidence 55555555555555556654322100000000000000000000 0000000000111222322222222222345556
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhc--hhhHHHH
Q 010194 300 TVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIG--RFAIQLM 376 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g--~~~~~~~ 376 (515)
.+..........+...|.|.|++. .+.++.. .+.+...+...+..+|.+++|++.+|++ .|+.+..
T Consensus 311 ~la~~~~~~~~~G~~tF~pKylE~QF~~sas~-----------A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~ 379 (539)
T PF03137_consen 311 ILAGVFESFIVSGFATFLPKYLESQFGLSASQ-----------ASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKF 379 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----------HHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHH
Confidence 666666667777888889988876 3333333 2233445555677788889999999975 3444444
Q ss_pred HHHHHHHHHHHHH---hhh----------hcc-----cCC-------------------------Cc----hHHHHHHHH
Q 010194 377 GFFFMTVFMFALA---IPY----------HHW-----TLP-------------------------DH----RIGFVVLYS 409 (515)
Q Consensus 377 ~~~~~~~~~~~~~---~~~----------~~~-----~~~-------------------------~~----~~~~~~~~~ 409 (515)
..+...++.++.. +.. ..+ ... .. .+.+++...
T Consensus 380 ~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~ 459 (539)
T PF03137_consen 380 CIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLF 459 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHH
Confidence 4333333333311 100 000 000 00 111222222
Q ss_pred HHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhc
Q 010194 410 LTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADT 464 (515)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~ 464 (515)
+..........| ......+.+|+++|+.+.|+...+..+ |.+-+|+++|.+.|.
T Consensus 460 ~~~~~~~~~~~p-~~~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 460 ILSFFTFMSQVP-STLITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHhcccc-hheeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 222333333333 335567889999999999999877765 778899999999984
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-15 Score=151.23 Aligned_cols=170 Identities=14% Similarity=0.052 Sum_probs=126.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH---hhhcCCCCchhHHHHHHHHHHHhhhc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLA---SGLSFGKEPKAVMITLCFFRFWLGFG 140 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~---~~~~~~~~~~~~~~~l~~~r~l~G~~ 140 (515)
+.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.+. ...+.+ ...++++|++.|++
T Consensus 282 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~ 355 (490)
T PRK10642 282 HYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNV------IGLIFAGLLMLAVI 355 (490)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHH
Confidence 788878888888899999999999999999999999988877654443332 222333 57788899999988
Q ss_pred cccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHH
Q 010194 141 IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILM 220 (515)
Q Consensus 141 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~ 220 (515)
.+........++.|.+|++.|++++++......++..++|.+.+.+.+..+ +|+.+++
T Consensus 356 ~~~~~g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~----------------------~~~~~~~ 413 (490)
T PRK10642 356 LNCFTGVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQ----------------------NLMMPAY 413 (490)
T ss_pred HHHHHHHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------------CchHHHH
Confidence 777777788889999999999999997544455556778888877754322 3777777
Q ss_pred HhHHHHHHHHHHHHhcCCchhhHHHH----hccHHHHHHHHHHHH
Q 010194 221 FGAIPALLTYYWRMKMPETARYTALV----AKNAKQAAADMSKVL 261 (515)
Q Consensus 221 ~~~~~~~~~~~~~~~~~e~p~~~~~~----~~~~~~~~~~~~~~~ 261 (515)
+..+.+++.++..+++||+|+++..+ +++.+|+.+.+.+.+
T Consensus 414 ~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 414 YLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHHHhhccc
Confidence 66666776666667789999985321 255566666666654
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.9e-13 Score=122.67 Aligned_cols=354 Identities=12% Similarity=0.052 Sum_probs=206.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh-----hhhH-HHHHHHHHHHHHHHhhhc-----C---CCCchhHH--
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG-----RKRV-YGMTLMMMVICSLASGLS-----F---GKEPKAVM-- 127 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G-----rr~~-l~~~~~~~~i~~~~~~~~-----~---~~~~~~~~-- 127 (515)
+++..-.+.+.+...+.. ...+.+|+.+|+.+ ||.. +..|..+...+..+..++ . +.+.....
T Consensus 11 ~vpA~lv~~lval~~~~a-p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~ 89 (403)
T PF03209_consen 11 GVPAWLVALLVALHYLVA-PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGL 89 (403)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHH
Confidence 888888898888888774 57999999999998 7765 455666666555554442 2 00011112
Q ss_pred HHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCcc
Q 010194 128 ITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAAST 207 (515)
Q Consensus 128 ~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (515)
....+.-.+.|+|.+...+...+++.|..|+++|+++.++.....-+|.+++.++.+.+.+.+.
T Consensus 90 ~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s---------------- 153 (403)
T PF03209_consen 90 ALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS---------------- 153 (403)
T ss_pred HHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC----------------
Confidence 3456677788999999999999999999999999999999999999999999999888753222
Q ss_pred ccCCCchHHHHHHHhHH--HHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhh
Q 010194 208 VPEADYIWRIILMFGAI--PALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFS 285 (515)
Q Consensus 208 ~~~~~~~wr~~f~~~~~--~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (515)
.-|..-.+... ..++..++..+-.|.+.. ...+ .+++++.+.++.++
T Consensus 154 ------~~rL~~v~~~~a~i~~~l~~ia~wg~E~r~~--~~~~-----------------------~~~~~~~~f~~a~~ 202 (403)
T PF03209_consen 154 ------PERLIQVIQGVALIALLLNLIALWGQEPRRS--RRAA-----------------------AAERPRPPFREAWR 202 (403)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHhcccCCc--cccc-----------------------CCCCCCccHHHHHH
Confidence 13333333222 222222222333333221 0000 00011222222222
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 010194 286 AKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQ-KDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVAL 364 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l 364 (515)
+....++.+.+....+.. ...++.....+ |+--+-.|.++. ++.. .......+.++|....+++
T Consensus 203 ~~~~~~~a~~f~~fl~l~---t~a~~~QD~iLEPygg~Vfgmsv~-------eTT~-----Lta~~~~G~L~G~~~~g~~ 267 (403)
T PF03209_consen 203 QVWASPQARRFFVFLFLG---TLAFFMQDVILEPYGGEVFGMSVG-------ETTR-----LTAFWGGGTLLGMLLAGFL 267 (403)
T ss_pred HHHhCCChhHHHHHHHHH---HHHHHhhHHHcCCchhHHcCCCHH-------HHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 222222222232222222 12333333222 222222344333 3332 5555666677777777777
Q ss_pred HH-hhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHH
Q 010194 365 ID-KIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGIS 443 (515)
Q Consensus 365 ~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~ 443 (515)
.. |.++++...+++....+++.++..... . .+.+.+.....+++...+. ......+...++.+++..|..+|..
T Consensus 268 l~~~~~~~~~a~~G~~~~~~~f~lii~a~~-~---~~~~~~~~~~~l~G~g~G~-f~vgals~mM~lt~~~~aG~~mG~W 342 (403)
T PF03209_consen 268 LSRRLGKKRTAALGCLLGALAFALIILAGP-L---GSPWLFRPGVFLLGLGNGL-FTVGALSLMMDLTSAGRAGLFMGAW 342 (403)
T ss_pred hcCCCCchHHHHHHHHHHHHHHHHHHHHHh-c---ccchHHHHHHHHHHHhhhH-HHHHHHHHHHhCCCCcchhHHHHHH
Confidence 66 677788888888888888777665542 1 1222222222222222222 1122234456777788999999999
Q ss_pred HHHhhhhHHHHHHHHHHhhhc----------cCchHHHHHHHHHHHHHHHHH
Q 010194 444 AASGKAGAIVGAFGFLYLADT----------SGVKKALLILGGANFLGMLFT 485 (515)
Q Consensus 444 ~~~~~~g~~i~~~~~~~l~~~----------~g~~~~~~~~~~~~~~~~~~~ 485 (515)
...+.+...++..+.|.+.|. .+|...|.+=++..+++.++.
T Consensus 343 GaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll 394 (403)
T PF03209_consen 343 GAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988871 235555555555555554443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.4e-13 Score=128.83 Aligned_cols=364 Identities=12% Similarity=0.091 Sum_probs=210.9
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
+....++-.+..++.........+.....+..+.. ..+....+.-.....+...+.++..|.++||+|||..+..
T Consensus 23 ~~~~~fl~~fa~~l~~~~~~~~~~~~~ct~~~~~~-----~~~~~~~~~~~~~~~~~~~i~s~~iG~lSD~~grk~~L~~ 97 (463)
T KOG2816|consen 23 LEPLLFLYMFSWGLSSTVMTNVILYLACTFGDDYQ-----LENGLLLGVKQVTAGLLTLISSPLIGALSDRYGRKVVLLL 97 (463)
T ss_pred HHHHHHHHHHHHHhcCcchhhhhhhhhcccccCcc-----chhhhhhhHHHHhhHHHHHHHHhhhHHhhhhhhhhhhHHH
Confidence 33444444555555554445555555544411000 1111112222224467778999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhc--cccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFG--IGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGM 181 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~--~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~ 181 (515)
......+..+...+... |.++ +.|+. .+.......++++|...+++|....++.......+..++|.
T Consensus 98 ~~~~~~l~~~~~~~~~~-------~~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~ 166 (463)
T KOG2816|consen 98 PLFGTILPALCLLFQGY-------WFFL----LLGLSGGFSAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPA 166 (463)
T ss_pred HHHHHHHhHHHHHHHHH-------HHhh----hcccccchhhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence 99998888887777652 3333 44432 23446778899999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHH
Q 010194 182 VAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKV 260 (515)
Q Consensus 182 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~ 260 (515)
+++.+... .|.-.+|.+..+..++..+ ..+++||+-.. ++++++ ..
T Consensus 167 ~~~~~~~~-----------------------~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~-----~~~~~~-----~~ 213 (463)
T KOG2816|consen 167 LGGYLVKF-----------------------LGIALVFLIAAASGILSLLYMLLFLPESLQE-----KERSDA-----TL 213 (463)
T ss_pred HHHHHHHh-----------------------cCchHHHHHHHHHHHHHHHHHhhccccccCc-----cccccc-----cc
Confidence 99999654 3366778887776666544 55778887432 111100 00
Q ss_pred HHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-hhhHHHh-HhcccCCcccchhHHH
Q 010194 261 LQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNL-FQKDIFT-AIGWIPKAKTMNAIEE 338 (515)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~ 338 (515)
.+.+... .......+.++.....+..+..+.+.+..+........... ..+.+.+ ..+|++....
T Consensus 214 ~~~~~~~-------~~~~~~~~~~~~~~~~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s------ 280 (463)
T KOG2816|consen 214 RELTPGS-------LDSSHVADAFQSLTKVGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFS------ 280 (463)
T ss_pred cccCCCc-------ccchhhhhhhhhhcccCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHH------
Confidence 0000000 00000001111111111111222222222221111111000 1112222 2455554422
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcC
Q 010194 339 VYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFG 418 (515)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (515)
...........+.-.+..+.+...++.|+....|.....+.....++....| .+... .........
T Consensus 281 -----~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~~w--------~~~~~-~v~~~~~~~ 346 (463)
T KOG2816|consen 281 -----DLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATETW--------MMFAA-GVVVALAGI 346 (463)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhccch--------hhhHH-HHHHHhhcc
Confidence 2222333333332333445788889999988888888888888888765321 11122 222223333
Q ss_pred ccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh
Q 010194 419 PNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 419 ~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~ 463 (515)
..|...+..+...+++.+|++.++...+..+...++|.+.+.+..
T Consensus 347 ~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~ 391 (463)
T KOG2816|consen 347 VFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFA 391 (463)
T ss_pred hhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHH
Confidence 456777888888999999999999999999999999999988864
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.7e-14 Score=141.50 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhh
Q 010194 70 ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSA 149 (515)
Q Consensus 70 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 149 (515)
..+...+..++..++.++.|+++||+|||++++++.++.+++.++.++.++ ...+++.+++.|++.++..+...
T Consensus 597 ~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s------~~~ll~~~~l~g~~~~~~~~~~~ 670 (742)
T TIGR01299 597 IYFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLSFGNS------ESAMIALLCLFGGLSIAAWNALD 670 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcc------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777899999999999999999999999999999999999999887 67788888998988888889999
Q ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH
Q 010194 150 TIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT 229 (515)
Q Consensus 150 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 229 (515)
++++|++|.++|++++|+......+|.++||.+++.+... +...+|++.++..++.
T Consensus 671 a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~------------------------~~~~pf~i~a~~lll~ 726 (742)
T TIGR01299 671 VLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGI------------------------TKAAPILFASAALACG 726 (742)
T ss_pred HHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------------------------hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877532 1456777777777776
Q ss_pred HHHHHhcCCch
Q 010194 230 YYWRMKMPETA 240 (515)
Q Consensus 230 ~~~~~~~~e~p 240 (515)
.++..++||+.
T Consensus 727 ~ll~~~LPET~ 737 (742)
T TIGR01299 727 GLLALKLPDTR 737 (742)
T ss_pred HHHHHhCCCCc
Confidence 66667789874
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=118.05 Aligned_cols=136 Identities=26% Similarity=0.330 Sum_probs=117.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhh
Q 010194 74 NGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMS 153 (515)
Q Consensus 74 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 153 (515)
.+.+.++..+++++.|++.||+|||+.+..+..+..++.+...+.++ ++.+.+.+++.|++.+...+....++.
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~ 77 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSN------ITVLIIARFLQGFGAAFALVAGAALIA 77 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 34567888999999999999999999999999999999988888877 788999999999999998999999999
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH
Q 010194 154 EYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR 233 (515)
Q Consensus 154 e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 233 (515)
|.+|+++|++..++......+|..+++.+.+.+. +..+|++.+++.++..++..+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~ 134 (141)
T TIGR00880 78 DIYPPEERGVALGLMSAGIALGPLLGPPLGGVLA-----------------------QFLGWRAPFLFLAILALAAFILL 134 (141)
T ss_pred HHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHh-----------------------cccchHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999885 34569999998776666554443
Q ss_pred -HhcCC
Q 010194 234 -MKMPE 238 (515)
Q Consensus 234 -~~~~e 238 (515)
+..||
T Consensus 135 ~~~~~~ 140 (141)
T TIGR00880 135 AFLLPE 140 (141)
T ss_pred hhcCCC
Confidence 44454
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.4e-14 Score=135.35 Aligned_cols=158 Identities=12% Similarity=0.048 Sum_probs=127.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccc
Q 010194 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGD 144 (515)
Q Consensus 65 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~ 144 (515)
.+.++.+...++..++..++.++.|+++||+|||+++..+.++.+++..+.....+. ...++.+++.+++.|++.+..
T Consensus 248 ~~~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~--~~~~~~l~l~~~l~g~~~~~~ 325 (418)
T TIGR00889 248 FVVKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPE--YFGYALLFLSMIVYGCAFDFF 325 (418)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999999999998887766664321 001456788899999999988
Q ss_pred cchhhHhhhhccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhH
Q 010194 145 YPLSATIMSEYANKKTRGAFIAAVF-AMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGA 223 (515)
Q Consensus 145 ~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~ 223 (515)
.+....++.|++|+++|+++.++.+ ...++|.++||++++.+.+..+. ...+||+..|.+.+
T Consensus 326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~-----------------~~~~~~~~~f~~~~ 388 (418)
T TIGR00889 326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFA-----------------YGTFDWQTMWLFFA 388 (418)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc-----------------ccCCchHHHHHHHH
Confidence 8888999999999999999999997 67889999999999999876542 12257999999876
Q ss_pred HHHHH-HHHHHHhcCCchh
Q 010194 224 IPALL-TYYWRMKMPETAR 241 (515)
Q Consensus 224 ~~~~~-~~~~~~~~~e~p~ 241 (515)
+..++ .++..++++|+.+
T Consensus 389 ~~~~i~~~l~~~~~~~~~~ 407 (418)
T TIGR00889 389 GYIAILAVLFMIFFKYSHN 407 (418)
T ss_pred HHHHHHHHHHHHHhCCccc
Confidence 66555 4455567787744
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.6e-13 Score=131.76 Aligned_cols=150 Identities=9% Similarity=0.037 Sum_probs=124.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+..+.|++.++..++..++.+++|++.||+|||+.+..+..+.+++.++.+++++ .+.+++.+++.|++.+.
T Consensus 258 ~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~~~~------~~~~~~~~~l~g~~~~~ 331 (420)
T PRK09528 258 EQGTRVFGYLNSFQVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGFATG------PLEVSILKLLHAFEVPF 331 (420)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHHHHH
Confidence 456678899999999999999999999999999999999999999999888888888 78888999999998888
Q ss_pred ccchhhHhhhhccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAA-VFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
..+....++.|.+|++.|+...+. ++....+|.++++.+.+.+.+ ..||+..|.+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~-----------------------~~G~~~~f~~~ 388 (420)
T PRK09528 332 LLVGVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYD-----------------------SIGFQGTYLIL 388 (420)
T ss_pred HHHHHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHH-----------------------hhCchHHHHHH
Confidence 778888999999999999887655 667788999999999999964 34599999986
Q ss_pred HHHHHHH-HHHHHhcCCchhh
Q 010194 223 AIPALLT-YYWRMKMPETARY 242 (515)
Q Consensus 223 ~~~~~~~-~~~~~~~~e~p~~ 242 (515)
++..++. .+..+.++++|+.
T Consensus 389 ~~~~~i~~~~~~~~~~~~~~~ 409 (420)
T PRK09528 389 GGIVLLFTLISVFTLSGDREL 409 (420)
T ss_pred HHHHHHHHHHHHHHhcCCchh
Confidence 6665554 4444555554443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=126.08 Aligned_cols=145 Identities=14% Similarity=0.206 Sum_probs=119.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+..+.+++.+...++..++.+++|+++||+|||+.+..+.....+........++ .+.+++.+++.+++.+.
T Consensus 248 ~~~~~~~g~~~~~~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~l~~~~~g~ 321 (393)
T PRK15011 248 HLPEKLAGVMMGTAAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLMAHS------PAILLGLQLLNAIYIGI 321 (393)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHH
Confidence 889999999988888888889999999999999999888777666655555555555 67778899988888777
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhH
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGA 223 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~ 223 (515)
..+....+..|.+|+ +|+++.++++....+|..+++.+++.+.+. .||+..|++.+
T Consensus 322 ~~~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~-----------------------~g~~~~~~~~~ 377 (393)
T PRK15011 322 LGGIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEI-----------------------WNYHAVFWFAL 377 (393)
T ss_pred HHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hhhHHHHHHHH
Confidence 777778888999985 599999999999999999999999998643 45999999888
Q ss_pred HHHHHHHHHHHhcCC
Q 010194 224 IPALLTYYWRMKMPE 238 (515)
Q Consensus 224 ~~~~~~~~~~~~~~e 238 (515)
+..++.++..++.||
T Consensus 378 ~~~~~~~~~~~~~~~ 392 (393)
T PRK15011 378 VMIIATLFCLLRIKD 392 (393)
T ss_pred HHHHHHHHHHHhhcC
Confidence 888877777766665
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=126.85 Aligned_cols=156 Identities=16% Similarity=0.066 Sum_probs=126.8
Q ss_pred HHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCC
Q 010194 43 SLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKE 122 (515)
Q Consensus 43 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~ 122 (515)
....|.+.++. |.+..+.+.+.+...++..++.++.|+++||+|||+.+..+.+...++.++..+.++
T Consensus 240 ~~~~p~~~~~~----------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~-- 307 (406)
T PRK11551 240 LNWLPSLLVGQ----------GLSRSQAGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAALAAAPS-- 307 (406)
T ss_pred HHHHHHHHHhC----------CCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCc--
Confidence 33456666667 889999999999999999999999999999999999988877777777666666666
Q ss_pred chhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCC
Q 010194 123 PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSAN 202 (515)
Q Consensus 123 ~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~ 202 (515)
.+.+.+..++.|++.++..+...+++.|.+|+++|++..++.+....+|..+||.+++.+.+..
T Consensus 308 ----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~------------ 371 (406)
T PRK11551 308 ----FAGMLLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG------------ 371 (406)
T ss_pred ----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC------------
Confidence 6777778888898887778888999999999999999999999999999999999999986322
Q ss_pred CCCccccCCCchHHHHHHHhHHHHHHHHHHHHhc
Q 010194 203 PAASTVPEADYIWRIILMFGAIPALLTYYWRMKM 236 (515)
Q Consensus 203 ~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 236 (515)
.+|...+++.....++..+..+.+
T Consensus 372 ----------~~~~~~~~~~~~~~~~~~~~~~~~ 395 (406)
T PRK11551 372 ----------RSTVGVIGASIPVILVAALAALLL 395 (406)
T ss_pred ----------CchHHHHHHHHHHHHHHHHHHHHH
Confidence 237777776665555554444444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=123.48 Aligned_cols=387 Identities=14% Similarity=0.110 Sum_probs=210.3
Q ss_pred HHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh---h--hhhHHHHHHHHHHHHHHHhhh
Q 010194 43 SLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM---G--RKRVYGMTLMMMVICSLASGL 117 (515)
Q Consensus 43 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~---G--rr~~l~~~~~~~~i~~~~~~~ 117 (515)
....+.+.+++ ++++++.....+...+... ..+++|.++|.+ | ||+-++++.++..++.+..+.
T Consensus 10 ~~~~~~l~~~l----------~ls~~~~~~~~~~~~lPw~-~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~ 78 (433)
T PF03092_consen 10 LAIYPFLKDDL----------GLSPAQLQRLSSLASLPWS-IKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLAL 78 (433)
T ss_pred HHHHHHHHHHc----------CCCHHHHHHHHHHHhCchH-HhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHh
Confidence 45677888889 9999999998888888754 578899999985 3 444567777777666666665
Q ss_pred cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010194 118 SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN--KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFP 195 (515)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~--~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 195 (515)
.+... .+.....+.-++..+|.+....++.+++.|... +++||...+.......+|.+++..++|.+.+
T Consensus 79 ~~~~~--~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~------- 149 (433)
T PF03092_consen 79 LPASE--SSAAIAVVLLFLASFGYAFADVAADALVVELARREPESRGDLQSFVWGVRSVGSLVGSLLSGPLLD------- 149 (433)
T ss_pred ccccc--chhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-------
Confidence 44411 114566677788889999999999999999884 3347788888888899999999999988853
Q ss_pred CCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhc-cHHHHHHHHHHHHHhhhhHhhhhHH
Q 010194 196 APIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAK-NAKQAAADMSKVLQVELEAEQEKVE 273 (515)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
..++|..|.+.++...+..+ ..+..+|.++....+.. ..++..+.... ..
T Consensus 150 ----------------~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~------------~~ 201 (433)
T PF03092_consen 150 ----------------SFGPQGVFLISAALPLLMLIVALFLLEERKVRPADEVFSFGKEEVPCLFG------------SF 201 (433)
T ss_pred ----------------cCCCeEEehHHHHHHHHHHHHHHHhhhhccccccchhhcccccccchhhH------------HH
Confidence 34478888886666555444 34444442111000000 00000000000 00
Q ss_pred HhhcCCcchhhhhhhhhhhhHHHHHHHH-HHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHh
Q 010194 274 QEKGKNDFGLFSAKFVRRHGLHLIGTTV-TWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALC 352 (515)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (515)
++.-...++.++.+.. +...+ ..+......... .. ...-+.....+ .++.+....+. ...+..+
T Consensus 202 ~~~~~~l~~~~~~~~i-------~~~~~~~~~~~~~~~~~~---~a---~~fy~~~~~~~-gp~fs~~f~~~-~~~vg~~ 266 (433)
T PF03092_consen 202 REQLSELWRALQQRAI-------WQPILFFIFFFNLPPSIS---SA---SSFYFQTDALG-GPHFSPSFYGT-LSIVGSI 266 (433)
T ss_pred HHHHHHHHHHHhhhHH-------HHHHHHHHHHHHhccCCC---Cc---cEEEEEecccc-ccccCHHHHHH-HHHHHHH
Confidence 0111111222222211 11111 111100000000 00 00001111111 00111111222 2355556
Q ss_pred hhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccC---CCchHHHHHHHHHHHHHhhcCccccccccccc
Q 010194 353 STVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL---PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAE 429 (515)
Q Consensus 353 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (515)
+.++|..+......+..-|+++....++..+..+.-......+.. -++.+..+.-..+..........|. ...++|
T Consensus 267 ~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~f~lgd~~l~~~~~~i~~mP~-lvl~a~ 345 (433)
T PF03092_consen 267 ASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQWFALGDTILEEVIGMIAFMPS-LVLAAR 345 (433)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeEEEEEhHHHHHHHHHHHHHHH-HHHHHH
Confidence 666666666665556666776666555444333322211111110 0111222222223333333333333 356789
Q ss_pred cCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC--------chHHHHHHHHHHHHHHHHHHhccccCC
Q 010194 430 IFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG--------VKKALLILGGANFLGMLFTFLVPESKG 493 (515)
Q Consensus 430 ~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (515)
+.|+..-|+.+++...+.|+|..++..+...+.+..+ .....++..++.++...+..++|+.++
T Consensus 346 lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 346 LCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 9999999999999999999999999999988887544 223344445555555555556776544
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.6e-13 Score=127.33 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=124.9
Q ss_pred HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCc
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEP 123 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 123 (515)
...+...+++ +.+..+.+++.+.+.++..+++++.|++.||+|||+.+..+..+..++.++..+.++..
T Consensus 226 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (377)
T TIGR00890 226 GLYKPYGQSL----------GLSDGFLVLAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAMLFIPMLN- 294 (377)
T ss_pred HHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHcccch-
Confidence 3444455667 78888999999999999999999999999999999999999999988888877776420
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCC
Q 010194 124 KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANP 203 (515)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 203 (515)
...+++..++.|++.+...+..+.++.|.+|+++|+++.++.+....+|..++|.+.+.+.
T Consensus 295 ---~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~---------------- 355 (377)
T TIGR00890 295 ---DVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHAL---------------- 355 (377)
T ss_pred ---hHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 2345567788888888888888899999999999999999999999999999999999885
Q ss_pred CCccccCCCchHHHHHHHhHHHHHHH
Q 010194 204 AASTVPEADYIWRIILMFGAIPALLT 229 (515)
Q Consensus 204 ~~~~~~~~~~~wr~~f~~~~~~~~~~ 229 (515)
+..||++.|++.++..++.
T Consensus 356 -------~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 356 -------TEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred -------hhhchhhHHHHHHHHHHHh
Confidence 3456999998877666554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-12 Score=122.23 Aligned_cols=143 Identities=24% Similarity=0.291 Sum_probs=131.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh-HHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKR-VYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~-~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
+.++.+.+++.+...++..++.++.|++.||+|||+ .+..+..+..++.+.....++ .+.+++..++.|++.+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~g~~~~ 280 (352)
T cd06174 207 GLSAAEAGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPS------LALLLVALLLLGFGLG 280 (352)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHh
Confidence 678899999999999999999999999999999999 999999999999999998887 7889999999999999
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
...+....++.|..|+++|++.+++.+....+|..+++.+.+.+. +..+|+..+++.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~-----------------------~~~~~~~~~~~~ 337 (352)
T cd06174 281 FAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLL-----------------------DTGGYGGVFLIL 337 (352)
T ss_pred ccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------cccCcchHHHHH
Confidence 999999999999999999999999999999999999999999985 455699999998
Q ss_pred HHHHHHHHHHHHh
Q 010194 223 AIPALLTYYWRMK 235 (515)
Q Consensus 223 ~~~~~~~~~~~~~ 235 (515)
++..++..+..++
T Consensus 338 ~~~~~i~~i~~~~ 350 (352)
T cd06174 338 AALALLAALLLLL 350 (352)
T ss_pred HHHHHHHHHHhee
Confidence 8887776665443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.3e-13 Score=121.34 Aligned_cols=183 Identities=14% Similarity=0.125 Sum_probs=139.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 010194 288 FVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK 367 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 367 (515)
.++.+.+.++.+.+.+......--....-.|.+.++.+++..+.+. ......+..-++.++.|.++||
T Consensus 23 y~~~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~------------i~s~f~i~YG~sKf~~G~~sDr 90 (448)
T COG2271 23 YKRWRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGI------------LGSAFSITYGVSKFVMGVLSDR 90 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHHHhhhhccc
Confidence 3344445666666666666666666777888888887777766544 4555556666777899999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHh
Q 010194 368 IGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASG 447 (515)
Q Consensus 368 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~ 447 (515)
.+.|+.+..++++++++.+++++.. +.....++..+-..+-+.+ .|.....+..-+|+++||+..++.|+..
T Consensus 91 ~npr~fm~~gLilsai~nil~Gfs~-------s~~~~~~l~~lng~fQg~G-wpp~~~~i~~Wfsr~eRG~~~siWn~sh 162 (448)
T COG2271 91 SNPRYFMAFGLILSAIVNILFGFSP-------SLFLFAVLWVLNGWFQGMG-WPPCARTITHWFSRKERGTWWSIWNTSH 162 (448)
T ss_pred CCCceeehHHHHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHcCccccCceEEEehhhh
Confidence 9999999999999999999998765 2233333333444444444 5667778889999999999999999999
Q ss_pred hhhHHHHHHHH--HHhhhccCchHHHHHHHHHHHHHHHHHH-hccc
Q 010194 448 KAGAIVGAFGF--LYLADTSGVKKALLILGGANFLGMLFTF-LVPE 490 (515)
Q Consensus 448 ~~g~~i~~~~~--~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 490 (515)
|+|+.+.|.+. +.+.++.+|+.+|++-++++++..++.+ ..++
T Consensus 163 NiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 163 NIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred hcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999 9998888999999999998888777777 4443
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.3e-12 Score=126.43 Aligned_cols=175 Identities=10% Similarity=0.024 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLM 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 376 (515)
+...+.++......+......|.+.++.|+++.+.+. ......++..++.++.|++.||+|||+.+..
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~ 93 (434)
T PRK11663 26 ITMYLGYALFYFTRKSFNAAMPEMLADLGLSRSDIGL------------LATLFYITYGVSKFVSGIVSDRSNARYFMGI 93 (434)
T ss_pred HHHHHHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHH------------HHHHHHHHHHHHHhhhhHHHhhcCCchhHHH
Confidence 3344444444444455667788888887776544222 5566677778889999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHH
Q 010194 377 GFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAF 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 456 (515)
+.++..++.++..... ....+.+..+..+.......+...+++.|.+|+++|++++++.+....+|..++|.
T Consensus 94 ~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~ 165 (434)
T PRK11663 94 GLIATGIINILFGFSS--------SLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPL 165 (434)
T ss_pred HHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888877665543 12222222222222222234566778899999999999999999999999999999
Q ss_pred HHHHhhhccCchHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 457 GFLYLADTSGVKKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 457 ~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
+.+.+.+..||+..|.+.+++.++..+... +++|+
T Consensus 166 ~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~ 201 (434)
T PRK11663 166 VVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999888776655544333 45543
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.9e-12 Score=122.99 Aligned_cols=142 Identities=19% Similarity=0.169 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchh
Q 010194 69 VASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLS 148 (515)
Q Consensus 69 ~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 148 (515)
+.++..+.+.++..++.++.|++.||+|||+.+..+..+.+++.++..+.++ .+.+++.+++.|++.+...+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~G~~~~~~~~~~ 323 (399)
T PRK05122 250 GAALALTLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLAPS------PWMALIGAALTGFGFSLVFPAL 323 (399)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHhHHHHHHHH
Confidence 4566677888899999999999999999999999998888888888888777 6778889999999999888888
Q ss_pred hHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH
Q 010194 149 ATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL 228 (515)
Q Consensus 149 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 228 (515)
...+.|.+|+++|+++.++++....+|..+++.+.+.+.+. .||+..|++.++..++
T Consensus 324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~-----------------------~g~~~~~~~~~~~~~~ 380 (399)
T PRK05122 324 GVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW-----------------------FGYPSIFLAAALAALL 380 (399)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------cCHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999998888643 4599999987777777
Q ss_pred HHHHHHhcCCc
Q 010194 229 TYYWRMKMPET 239 (515)
Q Consensus 229 ~~~~~~~~~e~ 239 (515)
..+..+++++.
T Consensus 381 ~~~~~~~~~~~ 391 (399)
T PRK05122 381 GLALTWLLYRR 391 (399)
T ss_pred HHHHHHHhccc
Confidence 66555555443
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-11 Score=107.09 Aligned_cols=185 Identities=12% Similarity=0.059 Sum_probs=120.4
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
.+.|+.-+.+-.++...+.+. +|.+-.+-+++ +.++.|++.+....+....+...+.|.++||+||
T Consensus 33 ~~Fqr~yl~vY~La~~aDWLQ----GpY~Y~LY~~y----------g~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Gr 98 (354)
T PF05631_consen 33 RRFQRKYLLVYLLAMAADWLQ----GPYLYALYESY----------GFSEHQIAILFVAGFASSAIFGTFVGSLADRYGR 98 (354)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----cchhHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 334444444445555555554 35555555677 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhh-hhccccccchhHHHH-HHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIM-SEYANKKTRGAFIAA-VFAMQGFG 175 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i-~e~~~~~~r~~~~~~-~~~~~~~G 175 (515)
|+.-++.+++.+++++.- ..++ ++.++++|++.|++....+.+--++. .|.-.++.+....+- +.....++
T Consensus 99 k~~cl~~cily~~scl~k-~~~~------~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~ 171 (354)
T PF05631_consen 99 KKACLLFCILYSLSCLTK-HSSN------YPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFG 171 (354)
T ss_pred hHHHHHHHHHHHHHHHHH-hccc------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 999999999999988644 4466 79999999999999999888877764 454322212122222 21111133
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH-HhcCCch
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR-MKMPETA 240 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 240 (515)
..+-.+.++.+.+..-+ ....|-..+|.......++..++. ...+|.+
T Consensus 172 n~~vAI~aGv~a~~l~~-----------------~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENy 220 (354)
T PF05631_consen 172 NGVVAIGAGVVANVLAD-----------------WFGFGPVAPFDAAIVLLAVAAVLILKTWPENY 220 (354)
T ss_pred hHHHHHHHhHHHHHHHH-----------------HhCCCCcchHHHHHHHHHHHHHHHHhcccccC
Confidence 33334444444433221 112335778888766666654433 3455543
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=122.27 Aligned_cols=176 Identities=8% Similarity=0.065 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
+....+..+......+......|.+.++.|+++.+.+. ......++..++.++.|++.||+|||+.+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~ 89 (394)
T PRK10213 22 VFSVAFCVACLIIVEFLPVSLLTPMAQDLGISEGVAGQ------------SVTVTAFVAMFASLFITQTIQATDRRYVVI 89 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHhcccCcHHHHH
Confidence 33344443444344455555677787888877655332 445556667778889999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.+..+.+++.++..... +.....+.-+..+.......+...+++.|.+|+++|+++.++.....+++..++|
T Consensus 90 ~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~ 161 (394)
T PRK10213 90 LFAVLLTLSCLLVSFAN--------SFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAA 161 (394)
T ss_pred HHHHHHHHHHHHHHHHC--------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776665432 2223333333334443334567778889999999999999999999999999999
Q ss_pred HHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 456 FGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 456 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
.+.+.+.+..||+..|++.+++.+++.+... ..||.
T Consensus 162 ~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~ 198 (394)
T PRK10213 162 PLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSL 198 (394)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 9999999999999999888776666554443 34543
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-12 Score=122.75 Aligned_cols=178 Identities=11% Similarity=0.014 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 374 (515)
.+....+.+.+............|.+.++.++++.+.+. ......++..++.+..|++.||+|||+.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~G~r~~~ 76 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGL------------AATLFYAAYVICGIPSNIMLAIIGARRWI 76 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHH------------HHHHHHHHHHHHHhhHHHHHHHhChHHHH
Confidence 344444455554555555666667666777776655333 55566677778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHH
Q 010194 375 LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVG 454 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 454 (515)
..+.++..++.++..+.. +...+.+.-++.+....+..+....++.|.+|+++|++++++.+....+|..++
T Consensus 77 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~ 148 (412)
T TIGR02332 77 AGIMVLWGIASTATMFAT--------GPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALG 148 (412)
T ss_pred HHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999888888887776543 222333333344444444456666788999999999999999999999999999
Q ss_pred HHHHHHhhh------ccCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 455 AFGFLYLAD------TSGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 455 ~~~~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
+.+.+.+.+ ..||+..|.+.++..++..++.+ ++||++
T Consensus 149 ~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 149 LILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 999998864 36899999988777766555444 666654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.4e-12 Score=126.73 Aligned_cols=153 Identities=11% Similarity=0.089 Sum_probs=120.9
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh--hhhhhHHH--HHHHHHHHHHHHhh
Q 010194 41 CISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK--MGRKRVYG--MTLMMMVICSLASG 116 (515)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr--~Grr~~l~--~~~~~~~i~~~~~~ 116 (515)
.....+|.+.++. +.+..+.+++.+...++..+++++.|+++|| +++|+... .+.++.+++.++..
T Consensus 259 ~~~~~l~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~ 328 (455)
T TIGR00892 259 APIIFLVPYAKDK----------GVDEYEAAFLLSIIGFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA 328 (455)
T ss_pred chHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334556566677 8999999999999999999999999999998 33443333 33444445555666
Q ss_pred hcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010194 117 LSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPA 196 (515)
Q Consensus 117 ~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 196 (515)
..++ ++.+++.+++.|++.+...+...+++.|.+|++++++..++++....+|..+||.+++.+.+..+
T Consensus 329 ~~~~------~~~~~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g----- 397 (455)
T TIGR00892 329 LAGD------YTGLVIYCIFFGLSFGSVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATK----- 397 (455)
T ss_pred Hhch------HHHHHHHHHHHHHHhchHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcC-----
Confidence 6666 78889999999999999889999999999999999999999999999999999999998853322
Q ss_pred CccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH
Q 010194 197 PIYSANPAASTVPEADYIWRIILMFGAIPALLTYY 231 (515)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 231 (515)
+|++.|++.++..++..+
T Consensus 398 -----------------~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 398 -----------------NYKYIFYASGSIVVSAGL 415 (455)
T ss_pred -----------------CcchHHHHhhHHHHHHHH
Confidence 399999887766555433
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9e-12 Score=121.65 Aligned_cols=137 Identities=19% Similarity=0.332 Sum_probs=118.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchh
Q 010194 69 VASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLS 148 (515)
Q Consensus 69 ~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 148 (515)
..+.+.+...++..++.++.|+++||+|||+.+..+..+..++.+...+.++ .+.+++.+++.|++.+...+..
T Consensus 259 ~~g~~~~~~~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~ 332 (408)
T PRK09874 259 ISGMIASVPGVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFVQT------PLQLGILRFLLGAADGALLPAV 332 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHhhhHhhHHHH
Confidence 3566777788888999999999999999999999998888888877777776 6888899999999999999999
Q ss_pred hHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH
Q 010194 149 ATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL 228 (515)
Q Consensus 149 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 228 (515)
.+++.+..|+++|++.+++......+|..+||.+++.+. +..||+..|++.++..++
T Consensus 333 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~-----------------------~~~g~~~~f~~~~~~~l~ 389 (408)
T PRK09874 333 QTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAIS-----------------------ANYGFRAVFLVTAGVVLF 389 (408)
T ss_pred HHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHH-----------------------hhcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999985 445699999998877776
Q ss_pred HHHHHH
Q 010194 229 TYYWRM 234 (515)
Q Consensus 229 ~~~~~~ 234 (515)
..+..+
T Consensus 390 ~~~~~~ 395 (408)
T PRK09874 390 NAVYSW 395 (408)
T ss_pred HHHHHH
Confidence 655443
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.1e-12 Score=122.33 Aligned_cols=167 Identities=16% Similarity=0.140 Sum_probs=121.2
Q ss_pred HHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 010194 307 DVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMF 386 (515)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 386 (515)
...........|.+.++.|.++.+.+. ......++..++.++.|++.||+|||+.+..+..+..++.+
T Consensus 18 ~~~~~~~~~~~p~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~ 85 (385)
T TIGR00710 18 PLGIDMYLPAFPEIAADLSTPASIVQM------------TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSL 85 (385)
T ss_pred HHHHHHhcccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHH
Confidence 334444445567777777766544222 55666777788899999999999999999998888887777
Q ss_pred HHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC
Q 010194 387 ALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG 466 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g 466 (515)
...... ......+..+..+.......+...+++.|.+|+++|+++.++.+....++..+++.+.+.+.+..+
T Consensus 86 ~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 157 (385)
T TIGR00710 86 GLALSN--------NIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLS 157 (385)
T ss_pred HHHHHc--------cHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 665533 222233333333333333456667888999999999999999999999999999999999999899
Q ss_pred chHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 467 VKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
|+..+.+.+++.++..+..+ ..||+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 158 WHAIFAFLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 99999888877777666555 4555443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-12 Score=121.68 Aligned_cols=179 Identities=15% Similarity=0.138 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhH
Q 010194 294 LHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAI 373 (515)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 373 (515)
+.+....+.++......+......|.+.++.++++.+.+. ......++..++.++.|++.||+|||+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~Dr~g~r~~ 79 (405)
T TIGR00891 12 NAFSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAAS------------LISAALISRWFGALMFGLWGDRYGRRLP 79 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3455556666666667777777778887887777665332 5566677788889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHH
Q 010194 374 QLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIV 453 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 453 (515)
+..+..+..++.++..... +........++.+.......+...+++.|.+|+++|++++++.+....+|..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~ 151 (405)
T TIGR00891 80 MVTSIVLFSAGTLACGFAP--------GYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVV 151 (405)
T ss_pred HHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHH
Confidence 9988888777776665433 22233333344444444445666788899999999999999999999999999
Q ss_pred HHHHHHHhhhccC--chHHHHHHHHHHHHHHHHHHhccccC
Q 010194 454 GAFGFLYLADTSG--VKKALLILGGANFLGMLFTFLVPESK 492 (515)
Q Consensus 454 ~~~~~~~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (515)
++.+.+.+.+..+ |+..+.+.++..++..+.....||++
T Consensus 152 ~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 152 AAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 9999999887665 88888776555555444433556543
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.1e-11 Score=122.89 Aligned_cols=183 Identities=15% Similarity=0.041 Sum_probs=122.9
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
++.+++..+.............|. +.+++ |.+..+.++..+...++..++.+++|+++||+|||+.+..
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~p~yl~~~~----------g~s~~~a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~ 329 (467)
T PRK09556 260 IWLLCFANIFLYIVRIGIDNWSPVYAFQEL----------GFSKEDAINTFTLFEIGALVGSLLWGWLSDLANGRRALVA 329 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 334444444444444444555564 45667 8999999999999999999999999999999999988766
Q ss_pred HHHHHHHHHHHhh--hcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH-HHHHHH
Q 010194 104 TLMMMVICSLASG--LSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF-GILSGG 180 (515)
Q Consensus 104 ~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~ 180 (515)
...+..++..+.. ...+ ...+.+.+++.|++.............|.+|+++||++.|+.+....+ |..++|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~ 403 (467)
T PRK09556 330 CIALALIIFTLGVYQHATS------EYMYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAK 403 (467)
T ss_pred HHHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHHHHhhHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHh
Confidence 5544444332222 2333 566778888888654333333346777999999999999999988886 778999
Q ss_pred HHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHH
Q 010194 181 MVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRM 234 (515)
Q Consensus 181 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~ 234 (515)
.+.+.+.+....+.+.. .....+|+..|++..+..++..+..+
T Consensus 404 ~~~G~i~~~~~~g~~~~-----------~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 404 VGLGMIADPTKNGTPIF-----------GYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hhHHHHhcccccccccc-----------cccccChHHHHHHHHHHHHHHHHHHH
Confidence 99998875110000000 01135699999887666666544443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.9e-12 Score=120.86 Aligned_cols=175 Identities=13% Similarity=0.014 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
+.+....++.....+....+.+.+++ +.|+++.+.+. ......+..+++.+..|+++||+|||+.+.
T Consensus 10 ~~l~~~~~~~~~g~~~~~~~l~~~l~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~ 77 (395)
T PRK10054 10 SALLASSLLLTIGRGATLPFMTIYLSRQYSLSVDLIGY------------AMTIALTIGVVFSLGFGILADKFDKKRYML 77 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHhhcCcchhHH
Confidence 34444455555566666666666664 46776654322 445555667778889999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.+..+..++.+++.+.. +.+.......+. +.......+...++..|..|+++|+++.|+.+...++|..++|
T Consensus 78 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp 149 (395)
T PRK10054 78 LAITAFASGFIAIPLVN-------NVTLVVLFFALI-NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGP 149 (395)
T ss_pred HHHHHHHHHHHHHHHHh-------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766665443 122222222222 2222233455677788999999999999999999999999999
Q ss_pred HHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 456 FGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 456 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
.+.+.+.+ .+|+..|.+.+++.+++.+... ++++.+
T Consensus 150 ~l~~~l~~-~g~~~~f~~~~~~~~i~~i~~~~~~~~~~ 186 (395)
T PRK10054 150 PLGTLLVM-QSINLPFWLAAICSAFPLVFIQIWVQRSE 186 (395)
T ss_pred HHHHHHHH-hccCcHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99998875 6899999988877777655544 455443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.7e-12 Score=120.65 Aligned_cols=145 Identities=15% Similarity=0.219 Sum_probs=120.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.++.+.+++.+.......++.++.|++.||+|||+++..+.++..+..+...+.++ .+.+++.+++.|++.+.
T Consensus 231 g~~~~~~g~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~g~ 304 (375)
T TIGR00899 231 GLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNS------LWALLMLQLLNAIFIGI 304 (375)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 888889999988888788889999999999999999988887776666555555555 67788889999998888
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhH
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGA 223 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~ 223 (515)
..+....++.|..|++ |+++.++++....+|..++|.+++.+.+. .||+..|++.+
T Consensus 305 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~-----------------------~g~~~~~~~~~ 360 (375)
T TIGR00899 305 LAGIGMLYFQDLMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAER-----------------------WSYHAVYWFAI 360 (375)
T ss_pred HHHHHHHHHHHhCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------------------ccchhHHHHHH
Confidence 8888889999998764 67999999999999999999999998643 45999999988
Q ss_pred HHHHHHHHHHHhcCC
Q 010194 224 IPALLTYYWRMKMPE 238 (515)
Q Consensus 224 ~~~~~~~~~~~~~~e 238 (515)
+..++..+...+++|
T Consensus 361 ~~~~~~~~~~~~~~~ 375 (375)
T TIGR00899 361 VMLIVALFCLLLIKD 375 (375)
T ss_pred HHHHHHHHHHheecC
Confidence 877776666655544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-11 Score=118.48 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhh
Q 010194 70 ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSA 149 (515)
Q Consensus 70 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 149 (515)
.++..+.+.++..+++++.|++.||+|||+.+..+..+.+++.++..+.++ .+.+++.+++.|++.+...+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~~~~~~~ 324 (392)
T PRK12382 251 AGFTLTAFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLAPT------AWVALAGAALTGAGCSLIFPALG 324 (392)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHccc------HHHHHHHHHHHHHHHHhHHHHHH
Confidence 456677788888999999999999999999999999999888888888777 67788899999999988888888
Q ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH
Q 010194 150 TIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT 229 (515)
Q Consensus 150 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 229 (515)
+.+.|.+|+++|+++.++.+....+|..++|.+.+.+.+. .||+..|.+.++..++.
T Consensus 325 ~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~-----------------------~g~~~~~~~~~~~~~~~ 381 (392)
T PRK12382 325 VEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS-----------------------FGYPSVFLAGAISAVLG 381 (392)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hCchHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999998643 45999999977777665
Q ss_pred HHHH
Q 010194 230 YYWR 233 (515)
Q Consensus 230 ~~~~ 233 (515)
.+..
T Consensus 382 ~~~~ 385 (392)
T PRK12382 382 IIVT 385 (392)
T ss_pred HHHH
Confidence 5544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-12 Score=122.99 Aligned_cols=175 Identities=11% Similarity=0.006 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhH---hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hch
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTA---IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK-IGR 370 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~ 370 (515)
.++.+.+..+.....+|....++|.++.+ .|+++.+ +........++..++.+++|+++|| +||
T Consensus 11 ~~~~l~~~~~~~~~~~~~~~~~L~~yl~~~~~lg~s~~~------------ag~~~~~~~~~~~~~~~~~G~laDr~~G~ 78 (475)
T TIGR00924 11 PLFTLFFVELWERFSYYGMQGILAVYLVQQAGLGFSQEQ------------AFIIFGAYSALVYLLTSVGWWFGDRVWGT 78 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHH------------HHHHHHHHHHHHHHHHhhHHHHHHhhcch
Confidence 34555556666677888888888888765 4554433 2225566667788899999999999 899
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhh---hhhhhHHHHHHh
Q 010194 371 FAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARL---RSTCHGISAASG 447 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~~~~~g~~~~~~ 447 (515)
|+.+..+..+.+++.+++.... ......+...+.+.+.....+...++..|.+|++. |+++.++.+...
T Consensus 79 ~~~l~~~~~~~~~g~~~~~~~~--------~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~ 150 (475)
T TIGR00924 79 KKTMVLGGIVLMLGHFMLAMSI--------YPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSI 150 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc--------cHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHH
Confidence 9999999999888887776532 12222222223333333345666778888887653 888999999999
Q ss_pred hhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 448 KAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 448 ~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
++|..++|.+.+.+.+..||+..|.+.++..+++.+...+.+
T Consensus 151 niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~ 192 (475)
T TIGR00924 151 NIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFAGR 192 (475)
T ss_pred HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHcc
Confidence 999999999999999988999999888766666655444433
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=117.28 Aligned_cols=149 Identities=15% Similarity=0.160 Sum_probs=113.8
Q ss_pred HHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC
Q 010194 319 DIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP 398 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (515)
-.+++.+-.+...+. ..+....+.++..++.+++++|+|+-+++..++.+..+=++.+....
T Consensus 396 WHled~~~~~~LfGv------------~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~------ 457 (618)
T KOG3762|consen 396 WHLEDLGGIKTLFGV------------VSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQ------ 457 (618)
T ss_pred HHHhhcCCcceeeee------------hhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhc------
Confidence 345566655555443 66777788999999999999999999999888887777777666554
Q ss_pred CchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHh-hhhHHHHHHHHHHhhhccCchHHHHHHHHH
Q 010194 399 DHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASG-KAGAIVGAFGFLYLADTSGVKKALLILGGA 477 (515)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~-~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~ 477 (515)
++|.++-+=++.+......+....+|++...||+.++++.++..... .+|-.+|+++.|.+.+.+|-+..|..+++.
T Consensus 458 --n~W~vLPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giA 535 (618)
T KOG3762|consen 458 --NPWMVLPIEILQGITHALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIA 535 (618)
T ss_pred --CchheeeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHH
Confidence 33444444444444444455667789999999999999999997665 579999999999999999999999998888
Q ss_pred HHHHHHHHHh
Q 010194 478 NFLGMLFTFL 487 (515)
Q Consensus 478 ~~~~~~~~~~ 487 (515)
|++..+....
T Consensus 536 cl~~l~~~~~ 545 (618)
T KOG3762|consen 536 CLVTLALFIS 545 (618)
T ss_pred HHHHHHHHHH
Confidence 8777666553
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.9e-11 Score=118.26 Aligned_cols=164 Identities=11% Similarity=0.063 Sum_probs=124.6
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcC
Q 010194 40 FCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSF 119 (515)
Q Consensus 40 ~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 119 (515)
.......|.+.++. +.+..+.+...+.+.++..++.++.|++.||+|||+.+..+..+..++.++....+
T Consensus 222 ~~~~~~lp~~l~~~----------g~s~~~ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (393)
T PRK09705 222 ASLIAWLPAFYIEI----------GASAQYSGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLP 291 (393)
T ss_pred HHHHHHHHHHHHHc----------CCChhhhhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHcc
Confidence 33444556665667 89999999999999999999999999999999999999888888777776555433
Q ss_pred CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCc
Q 010194 120 GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPI 198 (515)
Q Consensus 120 ~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~ 198 (515)
.. ...+. -++.|++.+...+.......+..+ +++|++..++.+....++..++|.+.+++.+..++
T Consensus 292 ~~-----~~~~~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~------ 358 (393)
T PRK09705 292 LQ-----LPVLW--AMVCGLGLGGAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGN------ 358 (393)
T ss_pred ch-----HHHHH--HHHHHHhccchHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------
Confidence 31 12222 245688888877877777777775 67899999999999999999999999999876553
Q ss_pred cCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhh
Q 010194 199 YSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARY 242 (515)
Q Consensus 199 ~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~ 242 (515)
|...|++.++.+++..+ ...+.||++..
T Consensus 359 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (393)
T PRK09705 359 ----------------YLMDWAFHALCVVGLMIITLRFAPARFPQ 387 (393)
T ss_pred ----------------chHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 88888886666655443 35567776543
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.4e-11 Score=119.76 Aligned_cols=174 Identities=11% Similarity=0.062 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-chhh
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI-GRFA 372 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~ 372 (515)
.++............+|+...+.|.++.+ .|+++.. +............++.+++|+++||+ |||+
T Consensus 10 ~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~------------a~~i~~~~~~~~~l~~ligG~LaDRilGrrr 77 (493)
T PRK15462 10 AIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNH------------AYELFSAYCSLVYVTPILGGFLADKVLGNRM 77 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence 34444555555667888888888888765 4554433 22245555566677888999999999 9999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchh--hhhhhhHHHHHHhhhh
Q 010194 373 IQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR--LRSTCHGISAASGKAG 450 (515)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g 450 (515)
.+..+.++..++.+++.... ...........+.. .......+...+++.|.+|++ .|.++.++.....++|
T Consensus 78 ~iliG~il~~lg~lll~~~~------~~~~~~~l~l~li~-iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG 150 (493)
T PRK15462 78 AVMLGALLMAIGHVVLGASE------IHPSFLYLSLAIIV-CGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVG 150 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHH-HhcccccccHHHHHHHHCCCCCccccceehHHHHHHHHH
Confidence 99999988888876554321 01111111111111 222223355567889999875 6999999999999999
Q ss_pred HHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 451 AIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 451 ~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
+.++|.+.+++.+..||+..|.+.++..+++.+..++
T Consensus 151 ~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~ 187 (493)
T PRK15462 151 SIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC 187 (493)
T ss_pred HHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998876655555554443
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=122.88 Aligned_cols=172 Identities=13% Similarity=0.062 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 374 (515)
.++...+..++.....+......|.+.++.|+++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~ 78 (471)
T PRK10504 11 QLWIVAFGFFMQSLDTTIVNTALPSMAQSLGESPLHMHM------------VIVSYVLTVAVMLPASGWLADRVGVRNIF 78 (471)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 345555566666666667777889998888776544221 44555667777888999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHH
Q 010194 375 LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVG 454 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 454 (515)
..+..+..++.++..... +.....+..++.+.+.....+...+++.|.+|+++|+++.|+.+...++|..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g 150 (471)
T PRK10504 79 FTAIVLFTLGSLFCALSG--------TLNELLLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLG 150 (471)
T ss_pred HHHHHHHHHHHHHHHHhC--------CHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 888777777666544322 222233333334444433456677788999999999999999999999999999
Q ss_pred HHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 455 AFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 455 ~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
|.+.+.+.+..||+..|.+...+..++.+...
T Consensus 151 ~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~ 182 (471)
T PRK10504 151 PALGGLLVEYASWHWIFLINIPVGIIGAIATL 182 (471)
T ss_pred hHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777776666655
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-12 Score=122.01 Aligned_cols=173 Identities=21% Similarity=0.223 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHH
Q 010194 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGF 378 (515)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 378 (515)
.....+.............|.+.++.++++.+.+ .......++.+++.++.|+++||+|||+.+..+.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 89 (398)
T TIGR00895 22 SFLIMLMDGYDLAAMGFAAPAISAEWGLDPVQLG------------FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSI 89 (398)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhccCCCHHHHH------------HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHH
Confidence 3334444444455566677777777666544322 2455566777888899999999999999999888
Q ss_pred HHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHH
Q 010194 379 FFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGF 458 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 458 (515)
.+..++.++..... +.....+..+..++......+...++..|.+|++.|++++++......+|..+++.+.
T Consensus 90 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 161 (398)
T TIGR00895 90 LLFSVFTLLCALAT--------NVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLA 161 (398)
T ss_pred HHHHHHHHHHHHcc--------chHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHH
Confidence 88777776655432 2223333334444444445677788899999999999999999999999999999999
Q ss_pred HHhhhccCchHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 459 LYLADTSGVKKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 459 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
+.+.+..||+..+.+.+++.++..++.+ +++++
T Consensus 162 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 162 GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 9999989999988887655555554444 55654
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.5e-12 Score=122.01 Aligned_cols=159 Identities=12% Similarity=0.033 Sum_probs=129.4
Q ss_pred HHHHhhhhhh-hhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCC
Q 010194 43 SLVTKLLGRI-YYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGK 121 (515)
Q Consensus 43 ~~~~~~i~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~ 121 (515)
....|.+.++ + |.+..+.+++.+...++..++.++.+++.||.++|+.+..+..+.+++.++..+.++
T Consensus 243 ~~~~p~~~~~~~----------g~~~~~~g~~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~- 311 (417)
T PRK10489 243 RVLYPALADEVW----------QMGAAQIGLLYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGLMPM- 311 (417)
T ss_pred HHhhHHHHHhcc----------CCChhHhHHHHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHccch-
Confidence 3445655555 6 888899999999999999999999999999988888888888888888887777776
Q ss_pred CchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCC
Q 010194 122 EPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSA 201 (515)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~ 201 (515)
++...++.++.|++.+...+...+++.|..|++.|+++.+++.....+|..+|+.+.+.+.+..
T Consensus 312 -----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~----------- 375 (417)
T PRK10489 312 -----WILAVLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM----------- 375 (417)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh-----------
Confidence 6777888999999888777778899999999999999999999999999999999999997543
Q ss_pred CCCCccccCCCchHHHHHHHhHHH-HHHHHHHHHhcCCch
Q 010194 202 NPAASTVPEADYIWRIILMFGAIP-ALLTYYWRMKMPETA 240 (515)
Q Consensus 202 ~~~~~~~~~~~~~wr~~f~~~~~~-~~~~~~~~~~~~e~p 240 (515)
|++..+++.+.. .++..+....++|.+
T Consensus 376 ------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (417)
T PRK10489 376 ------------TPVASASASGFGLLIIGVLLLLVLGELR 403 (417)
T ss_pred ------------chhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 477777765444 344555556666653
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-10 Score=107.36 Aligned_cols=151 Identities=12% Similarity=0.090 Sum_probs=128.2
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVAS-AVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g-~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
|++..|+. -+.-...-.+....++...+.|..|.|++++++.+...+..++..+.++ ...+-+..++-|++.+
T Consensus 36 n~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s------v~~mq~~q~~yg~~~a 109 (412)
T PF01770_consen 36 NFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS------VLAMQLMQFFYGLATA 109 (412)
T ss_pred CCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc------HHHHHHHHHHHHHHHH
Confidence 78877765 5666777788889999999999999999999999999999999999999 8999999999999877
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
. ..+-.+++-...|+++-.++.+...+..-+|..++.++|-.+... +....+...++.
T Consensus 110 ~-evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~---------------------~~~sy~~L~~is 167 (412)
T PF01770_consen 110 A-EVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSF---------------------GGVSYFQLNYIS 167 (412)
T ss_pred H-HHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---------------------cCCCHHHHHHHH
Confidence 6 688889999999999989999999999999999999999887643 234478887887
Q ss_pred HHHHHHHHHHHHhcCCchhh
Q 010194 223 AIPALLTYYWRMKMPETARY 242 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~e~p~~ 242 (515)
.....+++++.+++|..++.
T Consensus 168 l~~~~~a~~~~~fLP~~~~S 187 (412)
T PF01770_consen 168 LASVSLALLIALFLPMPKRS 187 (412)
T ss_pred HHHHHHHHHHHHHcCCCCcc
Confidence 77667777777888887654
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.2e-12 Score=119.30 Aligned_cols=163 Identities=17% Similarity=0.181 Sum_probs=120.0
Q ss_pred HHHHHHhhhhh-HHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 010194 308 VAYYSQNLFQK-DIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMF 386 (515)
Q Consensus 308 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 386 (515)
..........| .+.++.+.++.+.+. ......++..++.++.|+++||+|||+.+..+..+.+++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~ 77 (352)
T PF07690_consen 10 FGFSIISPALPLYLAEELGLSPSQIGL------------LFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSL 77 (352)
T ss_dssp HHHHHHHHHHH-HHHCCSTTTSHCHHH------------HHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHH
Confidence 34444444555 555566766665333 55566677888899999999999999999999888888844
Q ss_pred HHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC
Q 010194 387 ALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG 466 (515)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g 466 (515)
+..+.. +.+ ...+..++.+.+.....+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+
T Consensus 78 ~~~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~ 149 (352)
T PF07690_consen 78 LLAFAS-------NFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFG 149 (352)
T ss_dssp HHHHHC-------CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCH
T ss_pred Hhhhhh-------hHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccc
Confidence 444321 233 444444444455444567788899999999999999999999999999999999999998889
Q ss_pred chHHHHHHHHHHHHHHHHHH-hccc
Q 010194 467 VKKALLILGGANFLGMLFTF-LVPE 490 (515)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~-~~~~ 490 (515)
|+..+++.+++.++..++.. +.++
T Consensus 150 ~~~~~~~~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 150 WRWAFLISAILSLIAAILFILFLPE 174 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHCCC--
T ss_pred cccccccccchhhhhhhhHhhhhhh
Confidence 99999999998888877543 4433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.7e-11 Score=113.60 Aligned_cols=176 Identities=14% Similarity=0.107 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhH
Q 010194 294 LHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAI 373 (515)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 373 (515)
..++.+.+..|......+...-.+|.+-++.+.+....+. ....+..+..++.++...+.||+.||++
T Consensus 13 ~~l~aLa~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~------------lis~yAl~~ai~ap~l~~lt~r~~Rr~l 80 (394)
T COG2814 13 LALLALALAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQ------------LITAYALGVALGAPLLALLTGRLERRRL 80 (394)
T ss_pred HHHHHHHHHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3566777777888888899999999999998877665333 7777888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHH
Q 010194 374 QLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIV 453 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 453 (515)
++....+..++.++..+.. ++....+.=+..+.....++++..+++.++.|+++|+++++++.....+...+
T Consensus 81 Ll~~l~lFi~~n~l~alAp--------~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~ 152 (394)
T COG2814 81 LLGLLALFIVSNLLSALAP--------SFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVL 152 (394)
T ss_pred HHHHHHHHHHHHHHHHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHH
Confidence 9999999999988887765 34444444444455555566788889999999999999999999999999999
Q ss_pred HHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hcc
Q 010194 454 GAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVP 489 (515)
Q Consensus 454 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~ 489 (515)
|..+..++-|..||+.+|...+++.+++.+..+ .+|
T Consensus 153 GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 153 GVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999888777 677
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.2e-11 Score=116.78 Aligned_cols=139 Identities=18% Similarity=0.193 Sum_probs=112.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH-HhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSL-ASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
|.+..+.+++.+...++..+++++.|+++||+|||+... +..+..++.. +....++ .+.++++.++.|++.+
T Consensus 237 g~s~~~~~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~-~~~~~~~~~~~l~~~~~~------~~~~~~~~~l~g~~~~ 309 (390)
T PRK03545 237 GLSENFATLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLI-AIALLLVCLLLLLPAANS------EWHLSVLSIFWGIAIM 309 (390)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHH-HHHHHHHHHHHHHHHhch------HHHHHHHHHHHHHHHh
Confidence 888889999999999999999999999999999887544 4444444433 3344555 6788889999999887
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
...+...+.+.|..| ++|+++++++.....+|..+|+++++.+. +..|++..|++.
T Consensus 310 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~-----------------------~~~g~~~~~~~~ 365 (390)
T PRK03545 310 CIGLAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVS-----------------------LHLGLSSIGYVG 365 (390)
T ss_pred cchHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hccChhHHHHHH
Confidence 777778888888876 57899999999999999999999999996 456699999998
Q ss_pred HHHHHHHHHHH
Q 010194 223 AIPALLTYYWR 233 (515)
Q Consensus 223 ~~~~~~~~~~~ 233 (515)
++..++..+..
T Consensus 366 ~~~~~~~~~~~ 376 (390)
T PRK03545 366 AALALAALVWS 376 (390)
T ss_pred HHHHHHHHHHH
Confidence 77777655544
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=121.02 Aligned_cols=177 Identities=15% Similarity=0.046 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 374 (515)
.+..+.+..+....-......-.|.+.++.+.++.+.+. ....+.++.....+..|+++||+|||+.+
T Consensus 7 ~~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~------------~~~~~~l~~~~~~~~~G~l~D~~Grk~~l 74 (495)
T PRK14995 7 TLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLW------------IIDIYSLVMAGMVLPMGALGDRIGFKRLL 74 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHH------------HHHHHHHHHHHHHHHHHHHHHHhccHHHH
Confidence 445555566666566666777788888887766554322 44455556666777899999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccccc-CchhhhhhhhHHHHHHhhhhHHH
Q 010194 375 LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEI-FPARLRSTCHGISAASGKAGAIV 453 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~g~~~~~~~~g~~i 453 (515)
..+..+..++.++..... +...+++.-.+.+.+.....+.....+.+. .|+++|++++|+......+|..+
T Consensus 75 ~~~~~~~~~~~~~~~~a~--------~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~ 146 (495)
T PRK14995 75 MLGGTLFGLASLAAAFSP--------TASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAF 146 (495)
T ss_pred HHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999998888887776543 222333332333333333344444445455 47799999999999999999999
Q ss_pred HHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 454 GAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 454 ~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
+|.+.+.+.+..||++.|++...++++..++.. ++|+.
T Consensus 147 gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~ 185 (495)
T PRK14995 147 GPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQ 185 (495)
T ss_pred HHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999999988777777666555 55554
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=123.70 Aligned_cols=174 Identities=12% Similarity=0.085 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHH
Q 010194 298 GTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMG 377 (515)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 377 (515)
...+..+.............|.+.++.|.++.+.+. ......++..++.++.|++.||+|||+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (485)
T TIGR00711 6 VLMLGTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQW------------VITSYMLANAISIPLTGWLAKRFGTRRLFLIS 73 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhhhH------------HHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHH
Confidence 334444444455555666788888887776655333 55667778888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHH
Q 010194 378 FFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFG 457 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 457 (515)
..+..++.++..... +.....+..+..+.+.....+...+++.|.+|+++|+++.++......+|..++|.+
T Consensus 74 ~~~~~~~~~~~~~~~--------~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~ 145 (485)
T TIGR00711 74 TFAFTLGSLLCGVAP--------NLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTL 145 (485)
T ss_pred HHHHHHHHHHHhCcC--------CHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 888888777665432 233333344444444444566777889999999999999999999999999999999
Q ss_pred HHHhhhccCchHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 458 FLYLADTSGVKKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 458 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
.+.+.+..+|+..|++.+.+.++..++.. ..+++
T Consensus 146 ~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 180 (485)
T TIGR00711 146 GGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRD 180 (485)
T ss_pred HhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCc
Confidence 99999999999999888777766665555 45544
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=116.04 Aligned_cols=131 Identities=7% Similarity=-0.102 Sum_probs=117.6
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCC
Q 010194 42 ISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGK 121 (515)
Q Consensus 42 ~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~ 121 (515)
.....|...++. |.++.+.|.+.+...++..++.++.+++.||+|+|+.+.++.++..+..++.+++++
T Consensus 224 ~~~~~~~~l~~~----------g~s~~~~g~l~~~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~- 292 (382)
T TIGR00902 224 YYGFSAIYWQAA----------GISASATGLLWGIGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIGAIEA- 292 (382)
T ss_pred HHHHHHHHHHHC----------CCCHhHHHHHHHHHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHhHhh-
Confidence 334445555677 999999999999999999999999999999999999999999999999999999888
Q ss_pred CchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 010194 122 EPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF-AMQGFGILSGGMVAIIVSAA 189 (515)
Q Consensus 122 ~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~ 189 (515)
++.+++.++++|+..+...+....++.+. |+++|++..++++ ...++|..+|+.++|.+.+.
T Consensus 293 -----~~~~~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~ 355 (382)
T TIGR00902 293 -----FPLIFLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPT 355 (382)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88999999999999999999999999998 9999999999976 57789999999999999744
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-09 Score=103.25 Aligned_cols=343 Identities=13% Similarity=0.072 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhh
Q 010194 74 NGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMS 153 (515)
Q Consensus 74 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 153 (515)
.++-+....+++++.+.+.|+.|.|+.+.++......-.+..-+-+. +.++++-.+.|+|.+..+...-.+++
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~-------y~~yfssallG~Gaallw~GqG~ylt 128 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNS-------YYLYFSSALLGFGAALLWTGQGGYLT 128 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcch-------HHHHHHHHHhhhhHHheecccceehh
Confidence 78888889999999999999999999999999999988888877766 78899999999999999999999999
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH
Q 010194 154 EYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR 233 (515)
Q Consensus 154 e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 233 (515)
|..+++.+.+..++.......+.++|.++-..+.............+.+-.. ++...+..-+..+.+...+.++..+..
T Consensus 129 ~~st~~tie~Nisi~Wai~~~~li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~v~~~~~~l~~i~~ 207 (461)
T KOG3098|consen 129 SNSTRETIERNISIFWAIGQSSLIIGGIILFIYFQFSSSSAIITDGTRRLVF-EVLFIDFEIKVLFGVLLAISVLSIINF 207 (461)
T ss_pred hcCChhhHHHHHHHHHHHHHHHHHhhhHhheeeeEecccccccccchhhhhc-chhhhhHHHHHHHHHHHHHHHHHhhhe
Confidence 9999999999999999999999888877766554332211000000000000 000000111111111111222222222
Q ss_pred HhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 010194 234 MKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQ 313 (515)
Q Consensus 234 ~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (515)
.+.|.+.... .++.. ++ ...+..+..++....++ ++.+...++..+...
T Consensus 208 ~~~p~~~~~~-~~~~~-~~----------------------~~~~~l~~~~~l~~~~~----ml~L~~~f~~tG~~~--- 256 (461)
T KOG3098|consen 208 DFLPSKDVVN-CKSSS-ET----------------------SFSELLKLTFKLLKTPK----MLLLFPFFFYTGLET--- 256 (461)
T ss_pred eecCccchhh-hhhhc-cc----------------------cHHHHHHHHHHHhcCHh----HHHHHHHHHHHHHHH---
Confidence 3333221100 00000 00 00000111111111111 222222222111111
Q ss_pred hhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh---hchhhHHHHHHHHHHHHHHHHHh
Q 010194 314 NLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK---IGRFAIQLMGFFFMTVFMFALAI 390 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~ 390 (515)
..|...+-.....+.. ...+....-.+.....+++.+.+....+.+.+| +||++.+.++..+..+..++.-.
T Consensus 257 Sf~~~iypt~i~ft~~-----~~~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l 331 (461)
T KOG3098|consen 257 SFWISIYPTCISFTRK-----LGSNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHL 331 (461)
T ss_pred HHHHhccchhhhhhhh-----ccCcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhc
Confidence 1111111111111100 001111123335556666777777777777766 57788877777776666666554
Q ss_pred hhhccc---C-CC------chHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 010194 391 PYHHWT---L-PD------HRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLY 460 (515)
Q Consensus 391 ~~~~~~---~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 460 (515)
...... . +. .......+.....+..-....+..+.++.+.+| +.|..+.++...-..+...++-...+.
T Consensus 332 ~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G~~D~~~~t~~~~ii~~~~~-~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 332 SFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLGFGDACFNTQRYVIIALLYP-DDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred cccccCCCCCCcccccccccchhHHHHHHHHHhhHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 332111 0 00 123344555566666666677788888888884 778888888888888777776666554
Q ss_pred h
Q 010194 461 L 461 (515)
Q Consensus 461 l 461 (515)
.
T Consensus 411 ~ 411 (461)
T KOG3098|consen 411 L 411 (461)
T ss_pred h
Confidence 4
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-11 Score=118.78 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
+....+.++......+......|.+.++.++++.+.+ .......++..++.++.|+++||+|||+.+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~------------~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~ 87 (426)
T PRK12307 20 LFSAWLGYVFDGFDFMLIFYIMYLIKADLGLTDMEGA------------FLATAAFIGRPFGGALFGLLADKFGRKPLMM 87 (426)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 3444444555555555666666777777777654422 2555667778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.+..+.+++.++..... +.....+.-.+.+.......+....++.|.+|+++|+++.++......+|..+++
T Consensus 88 ~~~~~~~~~~~~~~~~~--------~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~ 159 (426)
T PRK12307 88 WSIVAYSVGTGLSGLAS--------GVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAA 159 (426)
T ss_pred HHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHH
Confidence 99998888887766543 2223333333333333344566677889999999999999999999999999999
Q ss_pred HHHHHhhhccCchHHHHHHHH
Q 010194 456 FGFLYLADTSGVKKALLILGG 476 (515)
Q Consensus 456 ~~~~~l~~~~g~~~~~~~~~~ 476 (515)
.+.+.+.+..+|+..+++...
T Consensus 160 ~l~~~l~~~~~w~~~f~i~~~ 180 (426)
T PRK12307 160 YFMPSFAEAYGWRAAFFVGLL 180 (426)
T ss_pred HHHHHHcccCCHHHHHHHHHH
Confidence 999999888899998876443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=120.65 Aligned_cols=161 Identities=14% Similarity=0.062 Sum_probs=120.0
Q ss_pred HHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh
Q 010194 311 YSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAI 390 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.......|.+.++.|+++.+.+. ......++..++.++.|++.||+|||+.+..+..+..++..+...
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~ 78 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGY------------VFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAF 78 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHH------------HHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHH
Confidence 34444556666667766554332 566677788888999999999999999999888887777776655
Q ss_pred hhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHH
Q 010194 391 PYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKA 470 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~ 470 (515)
.. +.....+..++.+.+.....+....++.|.+|+++|++++++......+|..+++.+.+.+.+..+|+..
T Consensus 79 ~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~ 150 (399)
T TIGR00893 79 AG--------AYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150 (399)
T ss_pred Hc--------CHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHH
Confidence 43 2233333333444444445667778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hcccc
Q 010194 471 LLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 471 ~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
+.+.+++.++..+..+ ..+++
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~ 172 (399)
T TIGR00893 151 FIIEGVLGIIWGVLWLKFIPDP 172 (399)
T ss_pred HHHHHHHHHHHHHHhhheecCC
Confidence 9988877776666555 44443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-11 Score=117.14 Aligned_cols=169 Identities=8% Similarity=0.032 Sum_probs=119.1
Q ss_pred HHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 010194 305 LLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVF 384 (515)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 384 (515)
.............|.+.++.+.++.+.+ .......++..++.++.|+++||+|||+.+..+..+..++
T Consensus 14 ~~~~~~~~~~~~lp~~~~~~~~s~~~~~------------~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~ 81 (392)
T PRK10473 14 LYPAGIDMYLVGLPRIAADLNASEAQLH------------IAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIA 81 (392)
T ss_pred HHHHHHHHHhhhHHHHHHHhCCCHHHHH------------HHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHH
Confidence 3334444444567777777666544322 2455566777788889999999999999999888887777
Q ss_pred HHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc
Q 010194 385 MFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~ 464 (515)
..+..... +........+..+.......+...+++.|.+|+++|+++.++.+....++..++|.+.+.+.+.
T Consensus 82 ~~~~~~~~--------~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~ 153 (392)
T PRK10473 82 SLLCSLAE--------TSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLK 153 (392)
T ss_pred HHHHHHhC--------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 76665432 1222222222333333333455677889999999999999999999999999999999998888
Q ss_pred cCchHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 465 SGVKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 465 ~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
.+|+..+++.+++.++..++.+ ..+|+++
T Consensus 154 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 154 FPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8999999888877777666554 5566543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.6e-11 Score=120.07 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
+......++......+....+.|.+.++.|++..+.+. ......++..++.++.|+++||+|||+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gls~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~ 105 (476)
T PLN00028 38 FHLSWISFFTCFVSTFAAAPLLPIIRDNLNLTKSDIGN------------AGIASVSGSIFSRLAMGPVCDLYGPRYGSA 105 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Confidence 33333344444444555666677777777776544221 345566677888899999999999999998
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.+.++.+++.++..... +.. .+.+..++.++...... ....++.|.+|++.|++++|+.+...++|..+++
T Consensus 106 ~~~~~~~~~~~~~~~~~-------s~~-~l~~~r~l~G~~~~~~~-~~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~ 176 (476)
T PLN00028 106 FLLMLTAPAVFCMSLVS-------SAT-GFIAVRFFIGFSLATFV-SCQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQ 176 (476)
T ss_pred HHHHHHHHHHHHHHHhc-------CHH-HHHHHHHHHHHHHHhhH-HHHHHHHHhcChhheeHHHHHHHHHHHHHHHHHH
Confidence 88877777766655433 122 22222222222222222 2335678999999999999999988888888887
Q ss_pred HHHHHhhh---------ccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 456 FGFLYLAD---------TSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 456 ~~~~~l~~---------~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
.+.+.+.+ ..||+..|++.+++.++..+..+++++
T Consensus 177 ~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~ 220 (476)
T PLN00028 177 LLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQ 220 (476)
T ss_pred HHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcC
Confidence 76665432 248999999988888777666664443
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.7e-11 Score=114.60 Aligned_cols=148 Identities=17% Similarity=0.155 Sum_probs=119.1
Q ss_pred HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCc
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEP 123 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~ 123 (515)
..+|...++. +.+.++.+++.+...++..+++++.|++.||+|||+++..+..+..++.+... ..
T Consensus 221 ~~lp~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~--~~--- 285 (381)
T PRK03633 221 GLMPLYLNHQ----------GMSDASIGFWMALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML--SQ--- 285 (381)
T ss_pred HHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh--hh---
Confidence 3456666666 88888999999999999999999999999999999999888888877665443 22
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCC
Q 010194 124 KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANP 203 (515)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~ 203 (515)
......+++.|++.....|...+++.|..|+++++...+......++|.++||.+++.+.+.
T Consensus 286 ----~~~~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~-------------- 347 (381)
T PRK03633 286 ----AAMAPALFILGAAGFTLYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQN-------------- 347 (381)
T ss_pred ----HHHHHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 33445777888877777899999999999988888888888888999999999999999644
Q ss_pred CCccccCCCchHHHHHHHhHHHHHHHHHHH
Q 010194 204 AASTVPEADYIWRIILMFGAIPALLTYYWR 233 (515)
Q Consensus 204 ~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 233 (515)
.+|++.|.+.+...++..+..
T Consensus 348 ---------~g~~~~f~~~~~~~l~~~~~~ 368 (381)
T PRK03633 348 ---------YSDNLLFIMIASVSFIYLLML 368 (381)
T ss_pred ---------hCccHHHHHHHHHHHHHHHHH
Confidence 448899888776666554443
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=117.71 Aligned_cols=162 Identities=9% Similarity=0.032 Sum_probs=125.8
Q ss_pred HhhhHHHHHHhhhh-hhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHh
Q 010194 37 YDLFCISLVTKLLG-RIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLAS 115 (515)
Q Consensus 37 ~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~ 115 (515)
.....+....|.+. +++ +.+..+.+++.+.+.++..++.++.|+++||+|||+.+.....+..+...+.
T Consensus 219 ~~~~~~~~~~p~~l~~~~----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~ 288 (394)
T PRK03699 219 LAQLTFISWVPEYAQKKF----------GMSLEDAGNLVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLF 288 (394)
T ss_pred HHHHHHHHHHHHHHHHHc----------CCChHHhhHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 33334444555554 567 8999999999999999999999999999999999999888887777776666
Q ss_pred hhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010194 116 GLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFP 195 (515)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 195 (515)
...++ .+.+.+..++.|++.+...+...++..|..|. ++++..+.......+|..++|.+.+.+.+.
T Consensus 289 ~~~~~------~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~------ 355 (394)
T PRK03699 289 VNTDD------PSHLLYAILGLGFFSSAIYTTIITLGSQQTKV-ASPKLVNFILTCGTIGTMLTFVVTSPIVAH------ 355 (394)
T ss_pred HHcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-CCHHHHHHHHHhhhHHHHHHHHHHHHHHHH------
Confidence 66666 45666778889988887788888888887764 467788888888899999999999999644
Q ss_pred CCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCC
Q 010194 196 APIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPE 238 (515)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 238 (515)
.||+..+++.++..++..+....+++
T Consensus 356 -----------------~g~~~~~~~~~~~~~~~~~~~~~~~~ 381 (394)
T PRK03699 356 -----------------FGLQAALLTANGLYAVVFVMCILLGF 381 (394)
T ss_pred -----------------hCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 44888988876666665554444443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.1e-11 Score=115.54 Aligned_cols=150 Identities=13% Similarity=0.140 Sum_probs=110.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhh---cCCCCchhHHHHHHHHHHHhhhc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGL---SFGKEPKAVMITLCFFRFWLGFG 140 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~---~~~~~~~~~~~~l~~~r~l~G~~ 140 (515)
|.+......+.....+...++.++.|+++||+|||+++..+.++..++.+.... ..+. .+.+++..++.|++
T Consensus 282 g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 356 (438)
T PRK09952 282 GLPRELFLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSI-----FWIVFFSIMLANIA 356 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCCh-----HHHHHHHHHHHHHH
Confidence 777776666666667777889999999999999999988887766555443322 2221 34455566777888
Q ss_pred cccccchhhHhhhhccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHH
Q 010194 141 IGGDYPLSATIMSEYANKKTRGAFIAAVF-AMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIIL 219 (515)
Q Consensus 141 ~g~~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f 219 (515)
.+...+...+++.|.+|.+.|+...++.+ .+..+|..++|.+.+.+.+..+ .+|+..+
T Consensus 357 ~~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~---------------------~~~~~~~ 415 (438)
T PRK09952 357 HDMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG---------------------GSWHSVA 415 (438)
T ss_pred HHHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC---------------------CCchHHH
Confidence 88778888999999999999988888854 4455888999999998864321 2388888
Q ss_pred HHhHHHHHHHHHHHHhcCCc
Q 010194 220 MFGAIPALLTYYWRMKMPET 239 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~e~ 239 (515)
...++.+++..+..+.++|+
T Consensus 416 ~~~~~~~~i~~v~~~~~~~~ 435 (438)
T PRK09952 416 IYLLAGCLISAMTALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHcccc
Confidence 87777777766666666664
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.3e-11 Score=119.01 Aligned_cols=178 Identities=11% Similarity=0.052 Sum_probs=121.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hch
Q 010194 293 GLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK-IGR 370 (515)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~ 370 (515)
++.++...+..+.....+|....+.+.|+.+ .|++.... ............+..+++|+++|| +||
T Consensus 13 p~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a------------~~i~~~~~~~~~~~~~~~G~laDr~~G~ 80 (489)
T PRK10207 13 PRPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQA------------FITFGAFAALVYGLISIGGYVGDHLLGT 80 (489)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------------HHHHHHHHHHHHHHHhhHHHhhhhccch
Confidence 3445666666666778888888888777654 45443321 112233333344455689999999 999
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchh--hhhhhhHHHHHHhh
Q 010194 371 FAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR--LRSTCHGISAASGK 448 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~ 448 (515)
|+++..+.++..++.+.+.+.. .....+.+.....+.+.....|...+++.|.+|++ +|+.+.++.....+
T Consensus 81 r~~~~~g~~~~~~g~~~~~~~~-------~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~n 153 (489)
T PRK10207 81 KRTIVLGAIVLAIGYFMTGMSL-------LKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSIN 153 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-------cchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHH
Confidence 9999999999999887776543 11112222233334444445667778899999876 45788999999999
Q ss_pred hhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcc
Q 010194 449 AGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVP 489 (515)
Q Consensus 449 ~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 489 (515)
+|..++|.+.|++.+..||+..|++.++..+++.+.....+
T Consensus 154 ig~~~g~~l~g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~ 194 (489)
T PRK10207 154 IGSLISLSLAPVIADKFGYSVTYNLCGAGLIIALLVYFACR 194 (489)
T ss_pred HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999886654444444443433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=119.68 Aligned_cols=163 Identities=10% Similarity=-0.014 Sum_probs=119.0
Q ss_pred HHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Q 010194 309 AYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFAL 388 (515)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 388 (515)
.........|.+.++.|+++.+.+. ......++..++.++.|+++||+|||+.+..+..+..++.++.
T Consensus 10 ~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~ 77 (379)
T TIGR00881 10 VRKNFALAMPYLVEEIGLSKTDLGL------------LLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFF 77 (379)
T ss_pred hHHhhhhhhHHHHHHhCCCHhHHHH------------HHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHH
Confidence 4444555567776777776654332 5566677788888999999999999999999988888887777
Q ss_pred HhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH-HHHHHhhhccCc
Q 010194 389 AIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA-FGFLYLADTSGV 467 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~-~~~~~l~~~~g~ 467 (515)
.... +.....+..++.+.......+...+++.|.+|+++|+++.++.+....+|..+++ .+.+.+.+..+|
T Consensus 78 ~~~~--------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 149 (379)
T TIGR00881 78 GFST--------SLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSW 149 (379)
T ss_pred HHhh--------hHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCc
Confidence 6543 2223333334444444445677778899999999999999999999999999999 566667777889
Q ss_pred hHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 468 KKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
+..+.+.+++.++..+..+ +.+++
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 150 HWVFIVPGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred hhHHHHHHHHHHHHHHHHheeeCCC
Confidence 9998888777666555554 45543
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=115.99 Aligned_cols=177 Identities=11% Similarity=0.027 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
++...+..+......+......|.+.++.|++..+.+. ......++..++.++.|++.||+|||+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~ 72 (382)
T PRK10091 5 ILSLALGTFGLGMAEFGIMGVLTELAHDVGISIPAAGH------------MISYYALGVVVGAPIIALFSSRYSLKHILL 72 (382)
T ss_pred HHHHHHHHHHHHhhHHHHHhChHHHHHHcCCCHHHHhH------------HHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 34444455555555556666778887887776554332 566677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.+..+.+++.++..... + .....+.-++.+.......+.......|..|+++|++++++......++..++|
T Consensus 73 ~~~~~~~~~~~l~~~~~-------~-~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~ 144 (382)
T PRK10091 73 FLVALCVIGNAMFTLSS-------S-YLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGI 144 (382)
T ss_pred HHHHHHHHHHHHHHHhC-------c-HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhc
Confidence 99888888877766543 2 222323333333332222344556778889999999999999999999999999
Q ss_pred HHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 456 FGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 456 ~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
.+.+.+.+..+|+..|.+.+++.++..+..+ .+||.+
T Consensus 145 ~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 145 PLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred cHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999888999999988887766655444 566643
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-11 Score=119.32 Aligned_cols=164 Identities=15% Similarity=0.118 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 374 (515)
.+....+.++.............|.+.++.++++.+.+ .......++..++.++.|++.||+|||+.+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~------------~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~ 88 (496)
T PRK03893 21 AFSAAWLGYLLDGFDFVLITLVLTEVQGEFGLTTVQAA------------SLISAAFISRWFGGLLLGAMGDRYGRRLAM 88 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence 34444455555555666666677777777776554322 144555667778889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHH
Q 010194 375 LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVG 454 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 454 (515)
..+..+.+++.++..... +.....+..++.++...+..+....++.|.+|++.|++++++......+|..++
T Consensus 89 ~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~ 160 (496)
T PRK03893 89 VISIVLFSVGTLACGFAP--------GYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVA 160 (496)
T ss_pred HHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 988888887777766543 223333333444444444456667788999999999999999999999999999
Q ss_pred HHHHHHhhhccCchHHHHHHHHHH
Q 010194 455 AFGFLYLADTSGVKKALLILGGAN 478 (515)
Q Consensus 455 ~~~~~~l~~~~g~~~~~~~~~~~~ 478 (515)
+.+.+.+.+..+|+..|.+.....
T Consensus 161 ~~~~~~l~~~~~w~~~f~~~~~~~ 184 (496)
T PRK03893 161 AQVYSLVVPVWGWRALFFIGILPI 184 (496)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Confidence 999999999999998887644333
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.5e-11 Score=114.21 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=118.9
Q ss_pred HhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHH-HHHHHHHHHHHHh
Q 010194 37 YDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYG-MTLMMMVICSLAS 115 (515)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~-~~~~~~~i~~~~~ 115 (515)
..........|.+.+++ +.+..+.+++.+...++..++.++.|+++||+|||+.+. .+.+..+++.+..
T Consensus 236 ~~~~~~~~~~p~~~~~~----------g~s~~~~~~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l 305 (402)
T TIGR00897 236 IGLFGFAVFLPMFVAEL----------GFSTSEWLQIWGTFFFTNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLAL 305 (402)
T ss_pred HHHHHHHHHHHHHHHHc----------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 33344455667777777 899999999999999999999999999999999988764 3334444443333
Q ss_pred hhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 010194 116 GLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFP 195 (515)
Q Consensus 116 ~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~ 195 (515)
.+.+.... +..+.+++..++.|++.+...+ ....+.|..| ++|+++.|+.+....+|..++|.+++.+.+
T Consensus 306 ~~~~~~~~-~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~------- 375 (402)
T TIGR00897 306 YYIPQHFG-HSFAVALIIAIALGIFLAGYVP-LAAVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIG------- 375 (402)
T ss_pred HHHHHccC-CcHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 32211000 0156677888889988776544 4566677655 579999999999999999999999999864
Q ss_pred CCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhc
Q 010194 196 APIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKM 236 (515)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 236 (515)
..||+..+++.++..++..+...++
T Consensus 376 ----------------~~g~~~~~~~~a~~~~i~~~~~~~~ 400 (402)
T TIGR00897 376 ----------------FFGAIGVVWIFAALYVVSAFLTAFI 400 (402)
T ss_pred ----------------hcchHHHHHHHHHHHHHHHHHHHHh
Confidence 3459999998877777666555554
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.1e-11 Score=118.46 Aligned_cols=144 Identities=15% Similarity=0.028 Sum_probs=109.2
Q ss_pred HHHHHHhhhHHHHHHhhhh-hhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 010194 32 FFTDAYDLFCISLVTKLLG-RIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVI 110 (515)
Q Consensus 32 ~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i 110 (515)
.+.............|.+. +++ +.+..+.+.+.+...++..++.++.|+++||+|||+.+..+..+..+
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~ 297 (394)
T TIGR00883 228 VIATTTTFYLITTYLPTYLTQTL----------GLSANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAAL 297 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc----------CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence 3333344444445555554 566 78888999999999999999999999999999999987755554443
Q ss_pred HH--HHhhhc--CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHH-HHHHHHHHHHHHHHHHHH
Q 010194 111 CS--LASGLS--FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAA-VFAMQGFGILSGGMVAII 185 (515)
Q Consensus 111 ~~--~~~~~~--~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~ 185 (515)
.. +...+. .+ .+.++...++.|++.+...+...+++.|.+|+++|+++.++ .+.+..+|..++|.+++.
T Consensus 298 ~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~ 371 (394)
T TIGR00883 298 LAVPLLMALLDSGS------FTLFFFLVLGLALIGGMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAA 371 (394)
T ss_pred HHHHHHHHHhcCCc------hHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHH
Confidence 33 222222 23 56777888899998888889999999999999999999987 456667899999999999
Q ss_pred HHHhhh
Q 010194 186 VSAAFK 191 (515)
Q Consensus 186 l~~~~~ 191 (515)
+.+..+
T Consensus 372 l~~~~g 377 (394)
T TIGR00883 372 LVAMTG 377 (394)
T ss_pred HHHHcC
Confidence 875443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.3e-11 Score=114.93 Aligned_cols=139 Identities=15% Similarity=0.007 Sum_probs=103.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++.+++.++.|+++||+|||+.+..+..+..++.++....... .. .+.....+..+..+.......+...+
T Consensus 39 ~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~l~g~~~~~~~~~~~~ 115 (365)
T TIGR00900 39 AALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALL--GG-LNIWQVYVLAGILAIAQAFFTPAYQA 115 (365)
T ss_pred HHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHc--CC-CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677778888999999999999999998888777776665544311 11 12223333333333444444566778
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
+..|..|+++|++++++.+....+|..++|.+.+.+.+..||+..+.+.++..+++.+..+.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 177 (365)
T TIGR00900 116 MLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVS 177 (365)
T ss_pred HHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999899999998877766666555443
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-10 Score=113.99 Aligned_cols=159 Identities=13% Similarity=0.094 Sum_probs=111.8
Q ss_pred hhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhh
Q 010194 314 NLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYH 393 (515)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 393 (515)
....|.+.++.+.++...+. ......++..++.++.|+++||+|||+.+..+..+..++.+......
T Consensus 33 ~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~- 99 (406)
T PRK15402 33 QPGMLAVVEDFNAGAEWVPT------------SMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQ- 99 (406)
T ss_pred hcchHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-
Confidence 33445566666665443221 44556677778888999999999999999988887777766655432
Q ss_pred cccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHH
Q 010194 394 HWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLI 473 (515)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~ 473 (515)
+.........+.+.......+...+...|.+|++.|.++.++......++..++|.+.+.+.+..+|+..+++
T Consensus 100 -------~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~ 172 (406)
T PRK15402 100 -------SIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVL 172 (406)
T ss_pred -------cHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHH
Confidence 1222222223323222223455667778999999999999999888889999999999999988899999988
Q ss_pred HHHHHHHHHHHHH-hccccC
Q 010194 474 LGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 474 ~~~~~~~~~~~~~-~~~~~~ 492 (515)
.+++.+++.+..+ ..||++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 173 FAALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHHHhCCCCC
Confidence 8888777766554 456554
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2e-10 Score=114.73 Aligned_cols=171 Identities=15% Similarity=0.042 Sum_probs=120.1
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCC
Q 010194 41 CISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120 (515)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 120 (515)
......|.+.++. +.+....++......+...++.++.|+++||+|||++++.+.++.+++.++.+....
T Consensus 289 ~~~~~~p~i~~~~----------g~~~~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~ 358 (479)
T PRK10077 289 VVLYYAPEIFKTL----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 358 (479)
T ss_pred HHHHHHHHHHHHc----------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHh
Confidence 3344557777777 777777777777888889999999999999999999999999999888877764422
Q ss_pred CCchhHHHHHHHHHHHhhhcccc-ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCcc
Q 010194 121 KEPKAVMITLCFFRFWLGFGIGG-DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIY 199 (515)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~g~-~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~ 199 (515)
.+.. ......+-++.+++.+. ..+....++.|.+|+++|++++++......+|..+++.+.+.+... +
T Consensus 359 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~-~-------- 427 (479)
T PRK10077 359 TQAP--GIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKN-S-------- 427 (479)
T ss_pred cCcc--cHHHHHHHHHHHHHHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc-c--------
Confidence 1110 11223333444443333 2367789999999999999999999999999999998777655310 0
Q ss_pred CCCCCCccccCCCchHHHHHHHhHHHHHHHHHH-HHhcCCch
Q 010194 200 SANPAASTVPEADYIWRIILMFGAIPALLTYYW-RMKMPETA 240 (515)
Q Consensus 200 ~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e~p 240 (515)
...+..+|++.|++.++.+++..+. .++.||++
T Consensus 428 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 461 (479)
T PRK10077 428 --------WLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 461 (479)
T ss_pred --------chhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence 0023567888888876666555444 34567764
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.3e-10 Score=111.63 Aligned_cols=167 Identities=17% Similarity=0.212 Sum_probs=139.4
Q ss_pred HHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hHHHHHHHHHHHH
Q 010194 34 TDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRK--RVYGMTLMMMVIC 111 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr--~~l~~~~~~~~i~ 111 (515)
.++++ .++........+++ +.+..+...+.-+..+...+|++++|++.||+|.| ++++++++++.+.
T Consensus 294 ~dg~~-ti~~~~~i~a~~~l----------g~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i 362 (477)
T PF11700_consen 294 SDGVN-TIISFAGIYATEVL----------GMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIII 362 (477)
T ss_pred HHHHH-HHHHHHHHHHHHhc----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Confidence 34443 34444555566688 99999999999999999999999999999999999 8998888888665
Q ss_pred HHHhhh--------cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 112 SLASGL--------SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 112 ~~~~~~--------~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
.+...+ ..+ -+.+.+.-++.|+..|...+...++.+|..|+++.+..+|++....-....+||++.
T Consensus 363 ~~~g~~G~~~~~~g~~~------~~~f~~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~ 436 (477)
T PF11700_consen 363 PLYGLFGFWPSFFGLKS------PWEFWVLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLF 436 (477)
T ss_pred HHHHHHHhhhcccCccc------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 555444 334 588999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCc
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPET 239 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 239 (515)
+.+.+.+++ -|+.+....++.++.+++.+.++++
T Consensus 437 g~i~~~tg~----------------------~r~g~~~l~~lf~~gl~ll~~v~~~ 470 (477)
T PF11700_consen 437 GLITDATGS----------------------QRYGFLFLLVLFLIGLILLFFVDVE 470 (477)
T ss_pred HHHHHHhCC----------------------chhHHHHHHHHHHHHHHHHhhccch
Confidence 999987764 7888887777777777776666553
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=114.83 Aligned_cols=162 Identities=10% Similarity=0.010 Sum_probs=104.7
Q ss_pred HhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh
Q 010194 313 QNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPY 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.....|.+.++ ++++.+.+. ......++..++.++.|+++||+|||+.+..+..+.+++.+++.+..
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~------------~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~ 114 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 114 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHH------------HHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhh
Confidence 34456665554 655544222 55667777888899999999999999999999888887777665532
Q ss_pred hcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHH-HHHHHHHhhhccCchHHH
Q 010194 393 HHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIV-GAFGFLYLADTSGVKKAL 471 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i-~~~~~~~l~~~~g~~~~~ 471 (515)
.. ...........++.+.......+.....+.|.+|+++|++++|+.+....+|+.+ +|.+...+....+|+..|
T Consensus 115 ~~----~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f 190 (452)
T PRK11273 115 WA----TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAAL 190 (452)
T ss_pred cc----cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHH
Confidence 10 1122222222223233333334444566788899999999999999998888654 554433333345899999
Q ss_pred HHHHHHHHHHHHHHH-hcccc
Q 010194 472 LILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~-~~~~~ 491 (515)
++.+++.++..++.+ ++||+
T Consensus 191 ~i~~~~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 191 YMPAFAAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHHHHHHccCC
Confidence 888777666554444 55654
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-10 Score=113.26 Aligned_cols=174 Identities=11% Similarity=0.004 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHH
Q 010194 299 TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGF 378 (515)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~ 378 (515)
......+............|.+.++.++++.+.+. ......++..++.++.|+++||+|||+.+..+.
T Consensus 13 ~~~~~~~~~~~~~~~~p~~~~i~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~ 80 (394)
T PRK11652 13 LVLLVAVGQMAQTIYVPAIADMARDLNVREGAVQA------------VMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGM 80 (394)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHH
Confidence 33333333334444444567777777776654322 556667778888899999999999999998888
Q ss_pred HHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHH
Q 010194 379 FFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGF 458 (515)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 458 (515)
.+..++.+...... +...+.+..+..+.......+....+..|.++++.++.+++..+....++..++|.+.
T Consensus 81 ~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~ 152 (394)
T PRK11652 81 SIFILGTLVALFAH--------SLTVLIAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIG 152 (394)
T ss_pred HHHHHHHHHHHHHc--------cHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777766654432 1222222222222222222344456677888889999999999999999999999999
Q ss_pred HHhhhccCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 459 LYLADTSGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 459 ~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
+.+.+..||+..|.+.+++.++..+... +.||++
T Consensus 153 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 153 GLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 9999888999999888776665544433 556643
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=116.28 Aligned_cols=184 Identities=17% Similarity=0.136 Sum_probs=128.8
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
.+....+..+.............|.+.+++ +.+..+.++......++..++.++.|+++||+|||+.+..
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~ 354 (481)
T TIGR00879 285 LFLGVVLQWFQQFTGINAIMYYSPTIFENA----------GVSTDHAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLI 354 (481)
T ss_pred HHHHHHHHHHHHHhCCeehHHHHHHHHHHc----------CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 333334444443433444455667777777 8888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhh---cCCCCc--hhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGL---SFGKEP--KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILS 178 (515)
Q Consensus 104 ~~~~~~i~~~~~~~---~~~~~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~ 178 (515)
+.++.+++.++.++ ...... ......+....++.+.......+....++.|.+|+++|+++.++.+....+|.++
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i 434 (481)
T TIGR00879 355 GAAGMAICLFVLGILGASFVTGSSKSSGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFI 434 (481)
T ss_pred HHHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHHHHHHccccCeehhhhhccCChHHHHHHHHHHHHHHHHHHHH
Confidence 98888887777662 111100 0012333333333333223335677788899999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH-HhcCCch
Q 010194 179 GGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR-MKMPETA 240 (515)
Q Consensus 179 g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p 240 (515)
++.+.+.+.+ ..+|++.|++.++.+++..+.. ++.||++
T Consensus 435 ~~~~~~~~~~-----------------------~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~ 474 (481)
T TIGR00879 435 VGFLFPTMLE-----------------------SIGVGGVFIFFGGLNVLGLIFVYFFLPETK 474 (481)
T ss_pred HHHHHHHHHH-----------------------hcCccceehhHHHHHHHHHHHHheecccCC
Confidence 9999888853 3458988888777766655444 4566654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-09 Score=107.05 Aligned_cols=157 Identities=17% Similarity=0.157 Sum_probs=118.8
Q ss_pred HHhhhhhhhhccCCCCCCCCCchhHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHh---hhcCC
Q 010194 45 VTKLLGRIYYYKEGSDSPGTLPDNVASAVNG-VALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLAS---GLSFG 120 (515)
Q Consensus 45 ~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s-~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~ 120 (515)
..|.+.+++ |.+.++.+++.. ...++..++.+++|+++||+|||+.+.++.++.+++.++. +...+
T Consensus 245 ~~~~l~~~~----------G~s~~~~g~~~~~~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~~ 314 (491)
T PRK11010 245 TTTFLIRGV----------GFDAGEVGLVNKTLGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITDK 314 (491)
T ss_pred HHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345555667 899999999974 6668999999999999999999998777666655544332 23222
Q ss_pred CCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccC
Q 010194 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYS 200 (515)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~ 200 (515)
. .+.+.+.-+++.++.|...+...++..+..+++.+++..++.+...++|..+++.+.+.+.+.
T Consensus 315 ~-----~~~l~~~~~l~~~~~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~----------- 378 (491)
T PRK11010 315 N-----LYSMGAAVFFENLCGGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA----------- 378 (491)
T ss_pred c-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 1 445555666666555656677788999999999999999999999999999888888888643
Q ss_pred CCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCc
Q 010194 201 ANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPET 239 (515)
Q Consensus 201 ~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 239 (515)
.||+..|.+.++.+++.++....++++
T Consensus 379 ------------~G~~~~f~~~~~~~l~~l~~~~~~~~~ 405 (491)
T PRK11010 379 ------------HGWPTFYLFSVAAAVPGLLLLLVCRQT 405 (491)
T ss_pred ------------hChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 459999999888888776666555544
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.4e-11 Score=115.61 Aligned_cols=142 Identities=10% Similarity=0.008 Sum_probs=99.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++..++.++.|+++||+|||+.+..+.++.+++.++....... ........+..+..+.......+....
T Consensus 66 ~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~l~g~~~g~~~~~~~~ 141 (438)
T TIGR00712 66 ALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA----TSSIAIMFVLLFLNGWFQGMGWPPCGR 141 (438)
T ss_pred HHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----cchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 5566667788889999999999999999888887777776665433210 112222222222233333323455556
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh-ccCchHHHHHHHHHHHHHHHHHH-hcccc
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD-TSGVKKALLILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~~~ 491 (515)
.+.|.+|+++|++++|+.+....+++.+++.+.+...+ ..+|+..|++.++++++..+..+ +++|+
T Consensus 142 ~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 142 TMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 77899999999999999999999999999888776554 46899999998888777655544 55554
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.9e-10 Score=111.96 Aligned_cols=140 Identities=16% Similarity=0.134 Sum_probs=103.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++..++.++.|+++||+|||+.+..+..+..++.++..... +...+.+.-++.+.......+..++
T Consensus 56 ~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~--------~~~~l~~~r~l~Gi~~~~~~~~~~~ 127 (413)
T PRK15403 56 SVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTT--------SMTQFLIARFIQGTSICFIATVGYV 127 (413)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677778888999999999999999988888777776665433 2222222222222222222344567
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
+..|.+|++++++++++.+....++..++|.+.+.+.+..||+..|++.+++.+++.+..+ .+||+++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~ 196 (413)
T PRK15403 128 TVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK 196 (413)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 7789999999999999999999999999999999998888999999998888777766544 5676543
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.8e-10 Score=114.43 Aligned_cols=171 Identities=12% Similarity=-0.002 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hchhhH
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK-IGRFAI 373 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~ 373 (515)
++...+..++....+|....+.+.++. +.|+++... +. .............+++|+++|| +|||+.
T Consensus 23 ~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a-----------~~-~~~~~~~~~~~~~~~~G~LaDr~~G~r~~ 90 (500)
T PRK09584 23 FYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADS-----------IT-LFSSFSALVYGLVAIGGWLGDKVLGTKRV 90 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH-----------HH-HHHHHHHHHHHHHHHHHHHHHhccchHHH
Confidence 455555666666777888888888874 456654331 11 2222222223334578999999 599999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchh--hhhhhhHHHHHHhhhhH
Q 010194 374 QLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR--LRSTCHGISAASGKAGA 451 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~ 451 (515)
+..+..+..++..++.+.. .....+.+.....+.+.....+...++..|.+|++ .+..+.++.+...++|.
T Consensus 91 ~~~g~~~~~ig~~l~~~~~-------~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~ 163 (500)
T PRK09584 91 IMLGAIVLAIGYALVAWSG-------HDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGS 163 (500)
T ss_pred HHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHH
Confidence 9999888888876665432 11122222222233333334456667889998754 34567888999999999
Q ss_pred HHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHH
Q 010194 452 IVGAFGFLYLADTSGVKKALLILGGANFLGMLFT 485 (515)
Q Consensus 452 ~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~ 485 (515)
.++|.+.+++.+..||+..|.+.++..+++.+..
T Consensus 164 ~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~ 197 (500)
T PRK09584 164 FFSMLATPWLAAKYGWSVAFALSVVGMLITVVNF 197 (500)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998776555555433
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-10 Score=110.47 Aligned_cols=162 Identities=9% Similarity=0.014 Sum_probs=108.2
Q ss_pred HHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 010194 310 YYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALA 389 (515)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 389 (515)
+.......|.+.++.++++.+.+. ......++..++.+..|+++||+|||+.+.........+....
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~------------~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~- 73 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGL------------LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL- 73 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-
Confidence 344455667777777776554322 4555666777788899999999999987655443333332211
Q ss_pred hhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchH
Q 010194 390 IPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKK 469 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~ 469 (515)
... .+.....+.-+..+..... .........|.+|+++|++++++......+|..+++.+.+.+.+..||+.
T Consensus 74 ~~~-------~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~ 145 (368)
T TIGR00903 74 LDP-------FNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQL 145 (368)
T ss_pred HHh-------ccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH
Confidence 110 1122222222222222222 23344555899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH-hccccC
Q 010194 470 ALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 470 ~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
.|.+.+++.++..++.+ ++||.+
T Consensus 146 ~f~~~~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 146 LIIPIAAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99998888777666555 667653
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-10 Score=110.53 Aligned_cols=161 Identities=14% Similarity=0.116 Sum_probs=112.0
Q ss_pred HHHHHhhhhhHHH-hHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 010194 309 AYYSQNLFQKDIF-TAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFA 387 (515)
Q Consensus 309 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 387 (515)
..+....+.+.++ ++.|+++...+. ......+...+..++.|+++||+|||+.+..+..+..++.+.
T Consensus 25 ~~~~~~~~~~~~~~~~~g~s~~~~gl------------~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~ 92 (400)
T PRK11646 25 GFFVVFPLISIRFVDQLGWAAVMVGI------------ALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFAT 92 (400)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHH------------HHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 3444444445444 456666544222 444445555666788999999999999999999888888877
Q ss_pred HHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCc
Q 010194 388 LAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGV 467 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~ 467 (515)
+.... +.+.+....+..+.......+...+++.|..|+++|++++|+.....++|..++|.+.+.+. ..||
T Consensus 93 ~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~ 163 (400)
T PRK11646 93 MAIAH--------EPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDF 163 (400)
T ss_pred HHHhc--------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence 65432 22223333333333333344566677889999999999999999999999999999999998 6799
Q ss_pred hHHHHHHHHHHHHHHHHHH-hccc
Q 010194 468 KKALLILGGANFLGMLFTF-LVPE 490 (515)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~-~~~~ 490 (515)
+..|++.++.+++..++.. +.++
T Consensus 164 ~~~f~~~~~~~~~~~i~~~~~~~~ 187 (400)
T PRK11646 164 RLVCATGAVLFVLAAAFNAWLLPA 187 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCc
Confidence 9999888777666654443 4454
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.1e-10 Score=104.15 Aligned_cols=177 Identities=13% Similarity=0.181 Sum_probs=145.8
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM 103 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~ 103 (515)
..++.+-..+.++.+ .+++.....-..++ |++..+..++.....+..+++++++|++.||+|.|+++..
T Consensus 255 ~~FLiA~~~~~DGv~-til~~~~~fg~~~~----------gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~ 323 (438)
T COG2270 255 VLFLIARFFYIDGVN-TILAMGGVFGAADL----------GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMI 323 (438)
T ss_pred HHHHHHHHHHHhhHH-HHHHHHHHHHHHHc----------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehH
Confidence 334444444555554 33444444445588 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 104 TLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 104 ~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
++++..+.++...+... -..+.++-.+.|...|+.+....++..+..|+++-++.+|++......+..+||.+-
T Consensus 324 ~lvi~~~~~~~~~~~~~------~~~f~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv 397 (438)
T COG2270 324 GLVILSIAALYLIFLEG------ELDFWILGLLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLV 397 (438)
T ss_pred HHHHHHHHHHHHHHccc------cHHHHHHHHHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHH
Confidence 99999999888887776 467888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCc
Q 010194 184 IIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPET 239 (515)
Q Consensus 184 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~ 239 (515)
+.+.+.+++ -|..+....++..+.++....+|+.
T Consensus 398 ~v~t~iTg~----------------------~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 398 AVITQITGS----------------------SRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred HHHHHHhcc----------------------hhhHHHHHHHHHHhhHhhEEeecCC
Confidence 999988775 6666666666666666666666654
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=112.88 Aligned_cols=157 Identities=15% Similarity=0.123 Sum_probs=115.5
Q ss_pred hhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhc
Q 010194 315 LFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHH 394 (515)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
...|.+.++.+.++.+.+. ......++..++.++.|++.||+|||+.+..+..+..++..+.....
T Consensus 12 p~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~-- 77 (377)
T PRK11102 12 PALPVIAADFGVSAGSVQM------------TLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQ-- 77 (377)
T ss_pred ccHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHc--
Confidence 4456666666665544222 55566677788899999999999999999999888888877766543
Q ss_pred ccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHH
Q 010194 395 WTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLIL 474 (515)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~ 474 (515)
......+..+..+++.....+...++..|.+|+++|++++++.+....+|..++|.+.+.+.+..+|+..+.+.
T Consensus 78 ------~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 151 (377)
T PRK11102 78 ------TIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVL 151 (377)
T ss_pred ------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH
Confidence 12222233333333333334566678899999999999999999999999999999999999988999999888
Q ss_pred HHHHHHHHHHHH-hcccc
Q 010194 475 GGANFLGMLFTF-LVPES 491 (515)
Q Consensus 475 ~~~~~~~~~~~~-~~~~~ 491 (515)
++++++..++.. ..+|+
T Consensus 152 ~~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 152 ALAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHHhCCcc
Confidence 877777665554 55554
|
|
| >KOG1330 consensus Sugar transporter/spinster transmembrane protein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.4e-11 Score=113.71 Aligned_cols=145 Identities=18% Similarity=0.083 Sum_probs=119.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......+...++.+++|++.||++||+++.+|..+-.++.+..++.. ..+.+.+.=.+.+.+.....|+..+
T Consensus 73 l~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~--------~Fwq~~l~R~~vGiGeAs~~~ia~s 144 (493)
T KOG1330|consen 73 LQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSN--------HFWQVLLCRGFVGIGEASYSPIAPS 144 (493)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccchhhhcccchh
Confidence 66777778888999999999999999999999999888888877764 3444555555556666677888999
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHHHHHH-hccccCCCChhh
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGMLFTF-LVPESKGKSLEE 498 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 498 (515)
+++|.+|.++|++++++.+.+...|..+|-.....+.+..+ |+++|...+++.++..++.+ +.+|.+++..++
T Consensus 145 ~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rga~~~ 219 (493)
T KOG1330|consen 145 LIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERGARDE 219 (493)
T ss_pred HhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccccccc
Confidence 99999999999999999999999999999888888877666 99999999999988888777 666655443333
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.5e-10 Score=98.52 Aligned_cols=184 Identities=12% Similarity=0.081 Sum_probs=137.6
Q ss_pred HHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Q 010194 21 HFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRV 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~ 100 (515)
||..+..........+ ..+.++...|++++.+ |.|.+|...+...-.+|..+ .++.|.+.|++|+|.+
T Consensus 1 rW~~l~a~~~v~~~~G-t~Y~Fs~yS~~Lk~~l----------~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~ 68 (250)
T PF06813_consen 1 RWLSLVASIWVQLCSG-TTYTFSAYSPQLKSRL----------GYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVV 68 (250)
T ss_pred ChhhHHHHHHHHHhcC-cccchhhhhHHHHHHh----------CCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHH
Confidence 3555555444444444 4577788899999999 99999999999999999887 5899999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCch-hHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHH
Q 010194 101 YGMTLMMMVICSLASGLSFGKEPK-AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSG 179 (515)
Q Consensus 101 l~~~~~~~~i~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g 179 (515)
+.+|.+...+|..+...+.+..-. ..+|.+.+..++.|.+.+.....+.....+.+|+ +||++.|+.-...+++..+-
T Consensus 69 l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~ 147 (250)
T PF06813_consen 69 LLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIF 147 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHH
Confidence 999999999999887765443211 2378888888898888777777777777788985 69999999999999988776
Q ss_pred HHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCch
Q 010194 180 GMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETA 240 (515)
Q Consensus 180 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p 240 (515)
..+...+. ++..-+..+.+...+.++.++..++++..|
T Consensus 148 t~i~~~~f-----------------------~~~~~~fll~la~~~~~v~l~~~~~vr~~~ 185 (250)
T PF06813_consen 148 TQIYSAFF-----------------------GDDPSSFLLFLAVLPAVVCLVAMFFVRPVP 185 (250)
T ss_pred HHHHHHHc-----------------------CCChHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 66655542 112244555555556666666656665544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.2e-10 Score=109.52 Aligned_cols=138 Identities=12% Similarity=0.076 Sum_probs=100.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++..++.++.|+++||+|||+.+..+..+..++.++..... +.....+..+..+.......+...+
T Consensus 46 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~--------~~~~l~~~~~l~G~~~~~~~~~~~~ 117 (401)
T PRK11043 46 SLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVE--------SAAQLLVLRFVQAVGVCSAAVIWQA 117 (401)
T ss_pred HHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhc--------CHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 55666777788999999999999999999888877777666655432 1222222222222222222334456
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcccc
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
...|.+|++.++...+..+....++..++|.+.+.+.+..||+..+++.+++.++..+..++.++.
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (401)
T PRK11043 118 LVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPS 183 (401)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 778999999899999999988999999999999999999999999988887777766665555443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.6e-10 Score=110.04 Aligned_cols=121 Identities=17% Similarity=0.245 Sum_probs=103.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccccc
Q 010194 66 PDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDY 145 (515)
Q Consensus 66 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 145 (515)
+..+.+++.+...++..++.+++++++||+|||+++..+..+.+++.++..+.++. .+.+++..++.|++.+...
T Consensus 255 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~~~~ 329 (437)
T TIGR00792 255 DPELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGSN-----LPLILVLIILAGFGQNFVT 329 (437)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcchh-----HHHHHHHHHHHHHHHHHHH
Confidence 35567788888899999999999999999999999999998888888777665431 5677788889999999888
Q ss_pred chhhHhhhhccc-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010194 146 PLSATIMSEYAN-------KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFK 191 (515)
Q Consensus 146 ~~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 191 (515)
+...++++|..+ ++++|...++.+....+|..+++.+.+.+.+..+
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 330 GLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999875 4567999999999999999999999999987665
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=114.80 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=106.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++.+++.+..|++.||+|||+.+..+.++..++.++...... ......++.-++.+.......+....
T Consensus 81 ~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~------~~~~~l~~~r~~~G~~~~~~~~~~~~ 154 (465)
T TIGR00894 81 ILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAG------GGIALVVFCRVIQGLAQGSVSPATHK 154 (465)
T ss_pred HHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHH------cCchHHHHHHHHHHHhcccchhhHHH
Confidence 556666778888999999999999999999888877777666543321 11223444445555555666777888
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHHHHHHh
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT-SGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
++.|.+|+++|++++|+......+|..+++.+.+.+.+. .||+..|++.++..++..++++.
T Consensus 155 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~ 217 (465)
T TIGR00894 155 IIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFV 217 (465)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988 49999999988877776666553
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.22 E-value=6.7e-10 Score=109.53 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=131.2
Q ss_pred HHHHHhhhhh-hhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCC
Q 010194 42 ISLVTKLLGR-IYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFG 120 (515)
Q Consensus 42 ~~~~~~~i~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~ 120 (515)
+..++|.+.+ ++ +.+....|++.+++.+|..+++++.+++.+|+++++.+..+.++++++.+..+++++
T Consensus 237 ~~aLlPl~a~~~l----------~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal~~~ 306 (524)
T PF05977_consen 237 VWALLPLFARDVL----------GGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLALSPS 306 (524)
T ss_pred HHHhhhHHHHHHh----------CCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhcchH
Confidence 3456777665 46 888999999999999999999999999999999999999999999999999999988
Q ss_pred CCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccC
Q 010194 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYS 200 (515)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~ 200 (515)
.+..++.-++.|++.........+.+.+..|++.|||+++++.+....+..+|..+.|.+.+..+
T Consensus 307 ------~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g--------- 371 (524)
T PF05977_consen 307 ------FWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFG--------- 371 (524)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---------
Confidence 78888999999999888888889999999999999999999999999999999999999975544
Q ss_pred CCCCCccccCCCchHHHHHHHhHHHHHHHH
Q 010194 201 ANPAASTVPEADYIWRIILMFGAIPALLTY 230 (515)
Q Consensus 201 ~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~ 230 (515)
-+..+.++++..++..
T Consensus 372 --------------~~~al~~a~~~lll~~ 387 (524)
T PF05977_consen 372 --------------VRTALLIAGAALLLSA 387 (524)
T ss_pred --------------HHHHHHHHHHHHHHHH
Confidence 7778877665544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-10 Score=107.47 Aligned_cols=172 Identities=14% Similarity=0.168 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhH-HHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHH
Q 010194 299 TTVTWFLLDVAYYSQNLFQKD-IFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMG 377 (515)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~ 377 (515)
..+..+......+....+.|. +.++.++++.+.+. ......++..++.++.|+++||+|||+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~ 73 (366)
T TIGR00886 6 SWFGFFLSFSVWFAFSPLAVQMIKDDLGLSTAQLGN------------LVAVPVLAGAVLRIILGFLVDKFGPRYTTTLS 73 (366)
T ss_pred HHHHHHHHHHHHHHhHHhhhHHHHHHhCCCHHHhhH------------hhHHHHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 344444445566666777775 55667776655333 56667778888999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHH
Q 010194 378 FFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFG 457 (515)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 457 (515)
..+..++.++...... ......+..+..+.... ..+....++.|.+|+++|+++.++.....++|..+++.+
T Consensus 74 ~~~~~i~~~~~~~~~~-------~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i 145 (366)
T TIGR00886 74 LLLLAIPCLWAGLAVQ-------SYSVLLLLRLFIGIAGG-SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFV 145 (366)
T ss_pred HHHHHHHHHHHHHHhh-------hHHHHHHHHHHHHHhch-hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 8888888777655330 22222223333333332 234456778999999999999999998888888888887
Q ss_pred HHHhhh----------ccCchHHH-HHHHHHHHHHHHHHH-hccc
Q 010194 458 FLYLAD----------TSGVKKAL-LILGGANFLGMLFTF-LVPE 490 (515)
Q Consensus 458 ~~~l~~----------~~g~~~~~-~~~~~~~~~~~~~~~-~~~~ 490 (515)
.+.+.+ ..+|+..+ ...+++..+..++.+ +.++
T Consensus 146 ~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (366)
T TIGR00886 146 MPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGAD 190 (366)
T ss_pred HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhccc
Confidence 776654 23788887 433444444333333 4444
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-10 Score=109.90 Aligned_cols=134 Identities=14% Similarity=0.095 Sum_probs=97.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......+...+..++.|++.||+|||+++..+..+..++.+.+.... .. .+.-+..+.......|...+
T Consensus 43 ~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~--------~~---~~~r~l~G~~~a~~~pa~~a 111 (393)
T PRK11195 43 LQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGI--------HP---LLAYGLVGIGAAAYSPAKYG 111 (393)
T ss_pred HHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHH--------HH---HHHHHHHHHHHHHHHHHHHH
Confidence 45556667778888999999999999999999888877666544322 11 12222334444455688889
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhcccc
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
++.|.+|+++|++++|+......++..+||.+.|.+.+. .+...+.+.+.+.+++.+....+||.
T Consensus 112 ~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~~~~~~~~~l~~~ 176 (393)
T PRK11195 112 ILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYLLAALFNLFIPRL 176 (393)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999885 36666655555444444444456654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=9e-10 Score=106.30 Aligned_cols=119 Identities=7% Similarity=-0.110 Sum_probs=104.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
|.+..+.|.+.+...++..+..++.|++.||+|+|+.+..+.++.+++.++.+.+++ .+.+++..++.|++.+.
T Consensus 236 g~s~~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~ 309 (382)
T PRK11128 236 GYSASTIGYLWSLGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGSTTA------LPWLIVIQILHCGTFTV 309 (382)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999999988888888777 78889999999999998
Q ss_pred ccchhhHhhhhccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVF-AMQGFGILSGGMVAIIVSAA 189 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~ 189 (515)
..+....++.+. +++++++..+... ...++|..+||.++|.+.+.
T Consensus 310 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~ 355 (382)
T PRK11128 310 CHLAAMRYIAAR-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQH 355 (382)
T ss_pred HHHHHHHHHHHC-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888988887 5566788888876 55678889999999999644
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=107.24 Aligned_cols=135 Identities=14% Similarity=0.067 Sum_probs=93.6
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccc
Q 010194 348 LIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVP 427 (515)
Q Consensus 348 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (515)
....++..++.++.|+++||+|||+.+..+..+..++.++.++................+.-+..+.+..+..+...+++
T Consensus 70 ~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i 149 (432)
T PRK10406 70 AAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYM 149 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHH
Confidence 44556667899999999999999999999999988888877654311000000111233333344444445567788999
Q ss_pred cccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh--------hccCchHHHHHHHHHHHHHH
Q 010194 428 AEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA--------DTSGVKKALLILGGANFLGM 482 (515)
Q Consensus 428 ~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~--------~~~g~~~~~~~~~~~~~~~~ 482 (515)
.|..|+++|+...++.......|..+++.+...+. +..||+..|.+.++..++..
T Consensus 150 ~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~ 212 (432)
T PRK10406 150 SEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVAL 212 (432)
T ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHH
Confidence 99999999999999888777777777776654443 25799999987766665543
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.9e-10 Score=106.40 Aligned_cols=177 Identities=11% Similarity=0.069 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHh-HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFT-AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAI 373 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~ 373 (515)
.++...+.+.......+......+.+-+ +.++++.+.+ . ......+...+.++..|++.||+|.|++
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g-----------~-l~ai~~l~~al~rip~G~l~Dr~G~R~v 102 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLF-----------L-LTALPSVSGALLRVPYSFMVPIFGGRRW 102 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHH-----------H-HHHHHHHHHHHHHHHHHHHHHHhCChHH
Confidence 3444444444444444444444444443 4666555422 2 3333444555667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHH
Q 010194 374 QLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIV 453 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 453 (515)
+..+..+..+..+...+.... ..+++....+..++.+..+. ..+.....+++.+|+++||+++|+....+++|..+
T Consensus 103 ~~~~~ll~~i~~~~~~~a~~~---~~~s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l 178 (462)
T PRK15034 103 TVFSTAILIIPCVWLGIAVQN---PNTPFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSV 178 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---cCCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHH
Confidence 999888888777776653110 01123333333333333322 45667778899999999999999998788888877
Q ss_pred HHHHHHHhh-----h-------------ccCchHHHHHHHHHHHHHHHHHHh
Q 010194 454 GAFGFLYLA-----D-------------TSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 454 ~~~~~~~l~-----~-------------~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
++.+.+.+. + ..+++.+..+...+.++..++.++
T Consensus 179 ~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~ 230 (462)
T PRK15034 179 MQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS 230 (462)
T ss_pred HHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666665533 2 223566666666666666655553
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=8.8e-10 Score=107.02 Aligned_cols=138 Identities=7% Similarity=-0.027 Sum_probs=113.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+..+.|.+.+...+...++.+..|++.||+|||+.+.++..+.+++..+...+++ .+.+++.+++.|++.+.
T Consensus 250 ~~~~~~~g~~~~~~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~~~~------~~~~~~~~~l~g~~~~~ 323 (396)
T TIGR00882 250 QQGTRVFGYVTTMGELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSFATT------ALEVVILKMLHAFEVPF 323 (396)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHH
Confidence 445567899999999999999999999999999999999999998888887777777 67888899999998766
Q ss_pred ccchhhHhhhhccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAA-VFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
.......++.+..+++.++...+. .+....+|..+++.+++.+.+. .||+..|.+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~-----------------------~G~~~~f~~~ 380 (396)
T TIGR00882 324 LLVGCFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS-----------------------IGFQGAYLVL 380 (396)
T ss_pred HHHHHHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh-----------------------cccHHHHHHH
Confidence 656666777888888888776665 5678899999999999999643 4599999987
Q ss_pred HHHHHHHH
Q 010194 223 AIPALLTY 230 (515)
Q Consensus 223 ~~~~~~~~ 230 (515)
++..++..
T Consensus 381 ~~~~~i~~ 388 (396)
T TIGR00882 381 GCIVLLFT 388 (396)
T ss_pred HHHHHHHH
Confidence 66665543
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-09 Score=109.13 Aligned_cols=145 Identities=18% Similarity=0.176 Sum_probs=104.6
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 345 AQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 345 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
.......++.+++.++.|++.||+|||+.+..+.++..++.++...... ..+........+.-+..+++..+..+...
T Consensus 60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~r~l~G~~~g~~~~~~~ 137 (502)
T TIGR00887 60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG--SSPKSVMATLCFWRFWLGVGIGGDYPLSA 137 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC--cccchHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3566677888899999999999999999999888888887766654321 00001122333344444444444567788
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh-----------------------ccCchHHHHHHHHHHHHH
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD-----------------------TSGVKKALLILGGANFLG 481 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~-----------------------~~g~~~~~~~~~~~~~~~ 481 (515)
.+..|.+|++.|++++++......+|..+++.+...+.. ..+|+..+.+.++..++.
T Consensus 138 ~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~ 217 (502)
T TIGR00887 138 IITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLA 217 (502)
T ss_pred HHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998888765432 137998887766666665
Q ss_pred HHHHHhcccc
Q 010194 482 MLFTFLVPES 491 (515)
Q Consensus 482 ~~~~~~~~~~ 491 (515)
.+..+++||+
T Consensus 218 ~~~~~~lpES 227 (502)
T TIGR00887 218 LYFRLTIPET 227 (502)
T ss_pred HHHHHhCCCC
Confidence 5555577876
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.2e-10 Score=111.85 Aligned_cols=138 Identities=16% Similarity=0.104 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhh
Q 010194 74 NGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMS 153 (515)
Q Consensus 74 ~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~ 153 (515)
.....+....+.++.+++.||+|||+.+.++.++.+++.++..+.++.. .+..++.-++.+++.+...+....+..
T Consensus 361 ~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (505)
T TIGR00898 361 LFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPVDL----YFLRTALAVLGKFGITSAFQMVYLYTA 436 (505)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445567778899999999999999999999999999888888776521 244555566667777777788899999
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH
Q 010194 154 EYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR 233 (515)
Q Consensus 154 e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 233 (515)
|.+|++.|++++++.+....+|.+++|.+.+ +. ..++..++++.+...++..+..
T Consensus 437 e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~-~~------------------------~~~~~~~~~~~~~~~~~~~~~~ 491 (505)
T TIGR00898 437 ELYPTVVRNLGVGVCSTMARVGSIISPFLVY-LG------------------------EKWLFLPLVLFGGLALLAGILT 491 (505)
T ss_pred ccccHHHHhhhHhHHHHHHHHHHHHHhHHHH-HH------------------------HHHHhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 42 1236667777777666666667
Q ss_pred HhcCCch
Q 010194 234 MKMPETA 240 (515)
Q Consensus 234 ~~~~e~p 240 (515)
+++||+.
T Consensus 492 ~~lpet~ 498 (505)
T TIGR00898 492 LFLPETK 498 (505)
T ss_pred HcCcCCC
Confidence 7888874
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.16 E-value=8.8e-10 Score=106.86 Aligned_cols=173 Identities=12% Similarity=0.000 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLM 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 376 (515)
+.+...++..++.........|.+.++.+.++.+.+ .......++..++.+..+++.||+|||+.+..
T Consensus 6 ~~~~~~f~~~G~~~~~~~~l~~~~~~~~~~s~~~~g------------~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~ 73 (410)
T TIGR00885 6 ALITSLFALWGFANDITNPMVPQFQQAFTLTAFQAA------------LVQSAFYGGYFIMAIPAAIFMKKLSYKAGILL 73 (410)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 344445555555555555677777777776554422 26677778888899999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHH
Q 010194 377 GFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAF 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 456 (515)
+..+.+++..++..... ..++.......+..+.......+....++.+..|++++++..++.+....+|..++|.
T Consensus 74 g~~l~~~g~~l~~~~~~-----~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~ 148 (410)
T TIGR00885 74 GLFLYALGAFLFWPAAE-----IMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMV 148 (410)
T ss_pred HHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888776543221 0122222222233333322234445566778889999999999999999999999999
Q ss_pred HHHHhhhc--------------------------cCchHHHHHHHHHHHHHHHHHH
Q 010194 457 GFLYLADT--------------------------SGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 457 ~~~~l~~~--------------------------~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+.+.+... .+|+.+|.+.+++.++..++..
T Consensus 149 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~ 204 (410)
T TIGR00885 149 VAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIM 204 (410)
T ss_pred HHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877532 3588888888776666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.8e-10 Score=91.26 Aligned_cols=130 Identities=17% Similarity=0.179 Sum_probs=97.7
Q ss_pred HHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccc
Q 010194 350 ALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAE 429 (515)
Q Consensus 350 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (515)
..++.+++.+..+++.||+|||+.+..+.....++.+...... +.+ ......+..+.......+....+..|
T Consensus 7 ~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~ 78 (141)
T TIGR00880 7 YALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSS-------NIT-VLIIARFLQGFGAAFALVAGAALIAD 78 (141)
T ss_pred ehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhc-------cHH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455667788899999999999999888777777766554432 122 22222333333333345667778899
Q ss_pred cCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 430 IFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 430 ~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
..|+++|++++++.+....++..++|.+.+.+.+..+|+..+.+.+.+.+++.+..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (141)
T TIGR00880 79 IYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAF 136 (141)
T ss_pred HCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999889988888887777777666553
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.8e-09 Score=104.69 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=96.3
Q ss_pred hhHHHHHHhhhhh-hhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH-hh
Q 010194 39 LFCISLVTKLLGR-IYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLA-SG 116 (515)
Q Consensus 39 ~~~~~~~~~~i~~-~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~-~~ 116 (515)
........|.+.+ .+ |.+..+.++....+.++..++.+++|+++||+|||+++..+..+..+..+. ..
T Consensus 254 ~~~~~~~~p~~l~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~ 323 (434)
T PRK15075 254 FYLITVYTPTFGKTVL----------HLSAADSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALS 323 (434)
T ss_pred HHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 3334445566544 46 888888999999999999999999999999999999987765544332221 11
Q ss_pred -hcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHhhh
Q 010194 117 -LSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA-MQGFGILSGGMVAIIVSAAFK 191 (515)
Q Consensus 117 -~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~~~~ 191 (515)
...+. .+..+.+..++.|++.+...+....++.|.+|+++|++..++... +..++..++|.+.+.+.+..+
T Consensus 324 ~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 324 WLVAAP----SFARMLAVELWLSFLYGSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHcCC----chHHHHHHHHHHHHHHHHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 11111 033444455556666666666677889999999999999998544 444557778988888875543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-09 Score=102.35 Aligned_cols=145 Identities=14% Similarity=0.035 Sum_probs=106.6
Q ss_pred CCchhHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVAL-CGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~-l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
|.+.++.|++..... ....++.++.|++.||+|+|+.+..+..+.++..+......+.........++....+.+++.+
T Consensus 239 G~s~~~ig~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 318 (390)
T TIGR02718 239 GWPLEWIGRLGMAGGAVTVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVAWSCSAFGSLITG 318 (390)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHH
Confidence 899999999988876 4667789999999999999999888776663333322211110000003444555666677777
Q ss_pred cccchhhHhhhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHH
Q 010194 143 GDYPLSATIMSEYANK-KTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMF 221 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~ 221 (515)
...+...+.+.+..++ +++++.+++.+...++|..+||.+++.+.+.. ||+..|++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~-----------------------G~~~~f~~ 375 (390)
T TIGR02718 319 ITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRF-----------------------GYAGGFLS 375 (390)
T ss_pred HHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------ccHHHHHH
Confidence 7778888888788776 78999999999999999999999999997543 48888888
Q ss_pred hHHHHHHHHH
Q 010194 222 GAIPALLTYY 231 (515)
Q Consensus 222 ~~~~~~~~~~ 231 (515)
.++..++..+
T Consensus 376 ~~~~~l~a~~ 385 (390)
T TIGR02718 376 GTVLAVLAIL 385 (390)
T ss_pred HHHHHHHHHH
Confidence 7766665443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.8e-09 Score=97.97 Aligned_cols=173 Identities=13% Similarity=0.081 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 374 (515)
.++.............+......+.+-++.+.++.+... +..+..+...+.++..|.+.||+|.|++.
T Consensus 15 ~L~~S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~l------------l~aiPil~GallRl~~g~l~drfGgR~~~ 82 (417)
T COG2223 15 NLWLSTLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGL------------LVAIPILVGALLRLPYGFLTDRFGGRKWT 82 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHH------------HHHHHHHHhHHHHHHHHhhhcccCchHHH
Confidence 344444444444444444444455554556666655332 55556666777899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHH
Q 010194 375 LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVG 454 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 454 (515)
..+.++..+-.+.+.+....+ +. +..+...++.+..+ +...+...++++.+|+|++|.++|+.. .+|+|..+.
T Consensus 83 ~~s~~l~~IP~~~~~~a~~~~----~~-~~ll~~gll~G~~G-asFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~ 155 (417)
T COG2223 83 ILSMLLLLIPCLGLAFAVTYP----ST-WQLLVIGLLLGLAG-ASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVA 155 (417)
T ss_pred HHHHHHHHHHHHHHHHHccCC----ch-HHHHHHHHHHhccc-ceehcccccccccCChhhhhHHHHHhc-cccccHHHH
Confidence 999888888777777655211 12 23333333333333 345677789999999999999999999 999999999
Q ss_pred HHHHHHhhhccC---chHHHHHHHHHHHHHHHHHH
Q 010194 455 AFGFLYLADTSG---VKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 455 ~~~~~~l~~~~g---~~~~~~~~~~~~~~~~~~~~ 486 (515)
..+.+.+....| |+.+..+.....++..+..+
T Consensus 156 q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~ 190 (417)
T COG2223 156 QLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAW 190 (417)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888 88888887777777666665
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.2e-09 Score=97.22 Aligned_cols=117 Identities=13% Similarity=0.187 Sum_probs=96.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.++++.++..+.+..+..++.+..+++.||+|+||++.++..+..++.++....++ ... ..+-++.|++.+.
T Consensus 174 g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~------~~~-~~~~~l~g~~~s~ 246 (310)
T TIGR01272 174 GLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHG------YVA-MWFVLALGLFNSI 246 (310)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC------HHH-HHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999998888888887766666554 222 2355588999999
Q ss_pred ccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAA 189 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~ 189 (515)
.+|...+...+..|++ .+++.++. ....+|.+++|++.|.+.+.
T Consensus 247 i~P~~~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~ 290 (310)
T TIGR01272 247 MFPTIFSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADC 290 (310)
T ss_pred HHHHHHHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHh
Confidence 9999999999988764 45666765 45668999999998888643
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.1e-09 Score=101.96 Aligned_cols=125 Identities=11% Similarity=0.001 Sum_probs=101.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+....++......++..++.++++++.||+|+|+++.++.++.+++.++..+.+.. .++.+++..++.|+|.+.
T Consensus 260 g~~~~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~~~~~----~~~~~~~~~~l~g~G~~~ 335 (448)
T PRK09848 260 NDTGLFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFWVSVW----SLPVALVALAIASIGQGV 335 (448)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHH
Confidence 5555555555555567788899999999999999999999999988888877765421 156677788899999999
Q ss_pred ccchhhHhhhhccccc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010194 144 DYPLSATIMSEYANKK-------TRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKA 192 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~-------~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 192 (515)
..+...++..|..|.+ ++|...++.+....+|..+|+.+.+.+.+..+.
T Consensus 336 ~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 336 TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999988754 358889999999999999999999988776653
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.1e-08 Score=97.58 Aligned_cols=140 Identities=17% Similarity=0.154 Sum_probs=99.1
Q ss_pred CCchhHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHh---hhcCCCCchhHHHHHHHHH----H
Q 010194 64 TLPDNVASAVNGVA-LCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLAS---GLSFGKEPKAVMITLCFFR----F 135 (515)
Q Consensus 64 ~~s~~~~g~~~s~~-~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~r----~ 135 (515)
|.+.++.+++.+.. .++..++.+++|++.||+|||+.+..+..+..+..+.. ++.++. .+.+++.- +
T Consensus 241 G~~~~~~g~~~~~~~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~~~-----~~~~~~~~~~~~~ 315 (402)
T PRK11902 241 GFSAGEVGIVNKTLGLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTPKH-----LWTMALAIGIENL 315 (402)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCc-----HHHHHHHHHHHHH
Confidence 89999999998665 45689999999999999999998877777666554433 343321 45555444 4
Q ss_pred HhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchH
Q 010194 136 WLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIW 215 (515)
Q Consensus 136 l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~w 215 (515)
..|++.+...+....++.+.+|.+++ ++.+...++|..+++.+++.+.+. .||
T Consensus 316 ~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~-----------------------~G~ 368 (402)
T PRK11902 316 CGGMGTAAFVALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEA-----------------------YGW 368 (402)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHH-----------------------hCh
Confidence 45566666677777777777776554 445555567777677788888644 459
Q ss_pred HHHHHHhHHHHHHHHHHHHh
Q 010194 216 RIILMFGAIPALLTYYWRMK 235 (515)
Q Consensus 216 r~~f~~~~~~~~~~~~~~~~ 235 (515)
+..|.+.++.+++.++..+.
T Consensus 369 ~~~f~~~~~~~~~~~~~~~~ 388 (402)
T PRK11902 369 PGFYLMTVVIALPGLALLWL 388 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999988887776555433
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.9e-09 Score=102.99 Aligned_cols=123 Identities=10% Similarity=0.040 Sum_probs=97.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhc---CCCCchhHHHHHHHHHHHhhhccc
Q 010194 66 PDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLS---FGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 66 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~---~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
+....+++.+...++..++.+++++++||+|+|+.+..+..+..++.+...+. .. +..+.+++.-++.|++.+
T Consensus 264 ~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~l~g~~~~ 339 (473)
T PRK10429 264 DADLFPYYLSYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP----HNALLIVIAGILLNIGTA 339 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc----hhHHHHHHHHHHHHHHHH
Confidence 35566777777778899999999999999999999998888777666554331 11 115667778888999999
Q ss_pred cccchhhHhhhhccc-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010194 143 GDYPLSATIMSEYAN-------KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKA 192 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 192 (515)
...+...++++|..+ +++.|..++......-+|..+++.+.+.+.+..+.
T Consensus 340 ~~~~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 340 LFWVLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 989999999999966 33345688999999999999999999998876663
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-09 Score=107.85 Aligned_cols=169 Identities=13% Similarity=-0.002 Sum_probs=123.4
Q ss_pred HHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHh
Q 010194 311 YSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAI 390 (515)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 390 (515)
.......+.+-++.++++.+.+. +.....++..++.++.+++.||.+||+.+.++.++.+++.++.++
T Consensus 50 g~~~~~l~~iek~F~lss~~~G~------------i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~al 117 (633)
T TIGR00805 50 GLVNSSLTTIERRFKLSTSSSGL------------INGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSL 117 (633)
T ss_pred HHHHhhchhhhhhhCCCCCccee------------eeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhC
Confidence 33444556666677777777555 556667777788889999999999999999999999999988877
Q ss_pred hhhccc------------------------C-----------------C--CchHHHHHHHHHHHHHhhcCccccccccc
Q 010194 391 PYHHWT------------------------L-----------------P--DHRIGFVVLYSLTFFFSNFGPNTTTFVVP 427 (515)
Q Consensus 391 ~~~~~~------------------------~-----------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (515)
...... . . ...+..+++.-++.+.+.....+...+++
T Consensus 118 phf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i 197 (633)
T TIGR00805 118 PHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYI 197 (633)
T ss_pred hHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhh
Confidence 642100 0 0 00123334445555565666677888999
Q ss_pred cccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc----------------------CchHHHHHHHHHHHHHHHHH
Q 010194 428 AEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS----------------------GVKKALLILGGANFLGMLFT 485 (515)
Q Consensus 428 ~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~----------------------g~~~~~~~~~~~~~~~~~~~ 485 (515)
.|.+|++.|+...|+.+....+|..+|+.+.+.+.+.+ +|+..|++.+++.++..+..
T Consensus 198 ~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~l 277 (633)
T TIGR00805 198 DDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIPF 277 (633)
T ss_pred hccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887532 25667877777777766655
Q ss_pred Hhcccc
Q 010194 486 FLVPES 491 (515)
Q Consensus 486 ~~~~~~ 491 (515)
++++++
T Consensus 278 ~~~p~~ 283 (633)
T TIGR00805 278 FFFPKA 283 (633)
T ss_pred HhCccc
Confidence 555554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=99.04 E-value=8.7e-07 Score=89.78 Aligned_cols=165 Identities=10% Similarity=0.073 Sum_probs=126.6
Q ss_pred HHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHhhhcCCC
Q 010194 43 SLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVYGMTLMMMVICSLASGLSFGK 121 (515)
Q Consensus 43 ~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~ 121 (515)
..++..+.+.+ +.+.+....+...+....-+..+++|+++|+ +||++.+.++.++..++.++.++....
T Consensus 8 aiLvlYl~~~l----------g~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~ 77 (654)
T TIGR00926 8 TILVLYFLNFL----------GFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIP 77 (654)
T ss_pred HHHHHHHHHHc----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCc
Confidence 34445555566 8899999999999999999999999999996 899999999999999999888775321
Q ss_pred Cc--hhHHHHHHHHHHHhhhccccccchhhHhhhhccccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010194 122 EP--KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKK---TRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPA 196 (515)
Q Consensus 122 ~~--~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 196 (515)
.. .......+++-.+..+|.|+.-+...+...|.++++ +|-..+.++..+.++|.++++++...+....+.
T Consensus 78 ~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~---- 153 (654)
T TIGR00926 78 SSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGC---- 153 (654)
T ss_pred ccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----
Confidence 00 111234667788888999999999999999999754 366778888999999999999888887533210
Q ss_pred CccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH
Q 010194 197 PIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR 233 (515)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 233 (515)
.....+|...|.+.++..++.++..
T Consensus 154 ------------fg~~~~~~~aF~i~~i~m~ia~lvf 178 (654)
T TIGR00926 154 ------------FGCQDCYPLAFGVPAILMILALIVF 178 (654)
T ss_pred ------------cccCcchHHHHHHHHHHHHHHHHHH
Confidence 0124569999999888777765554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-08 Score=94.85 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=116.0
Q ss_pred HhhhhhHHHhHhcccCCc-ccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhh
Q 010194 313 QNLFQKDIFTAIGWIPKA-KTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIP 391 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 391 (515)
.....|.+.++.|+++.+ .+. .......+..+..+.+|++.||+|.|+++..+.+...+..+++++.
T Consensus 45 ~s~a~p~L~~elglT~~qv~G~------------I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa 112 (511)
T TIGR00806 45 ESFITPYLLTVLNFTEETVTNE------------IIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG 112 (511)
T ss_pred HHHHHHHHHHHcCCCHHHhcch------------HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH
Confidence 444566677778888776 444 5566666777788899999999999999999999888888888775
Q ss_pred hhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHH
Q 010194 392 YHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKAL 471 (515)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~ 471 (515)
. ....+.+.=++.+.+..... ....++...+|+++|+++.|+.+....+|.++++.+.+. ....||+...
T Consensus 113 ~--------Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~ 182 (511)
T TIGR00806 113 T--------SVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYS 182 (511)
T ss_pred H--------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHH
Confidence 4 23344444444455544444 667888999999999999999999999999999999999 4567776543
Q ss_pred ---HHHHHHHHHHHHHHHhccccC
Q 010194 472 ---LILGGANFLGMLFTFLVPESK 492 (515)
Q Consensus 472 ---~~~~~~~~~~~~~~~~~~~~~ 492 (515)
++..+...++.++.+++|..+
T Consensus 183 ~Ln~Isl~s~~~a~~~a~~LP~~~ 206 (511)
T TIGR00806 183 TLNIISLVFMTFSVFLALFLKRPK 206 (511)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCc
Confidence 333444455555566777443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-08 Score=99.93 Aligned_cols=150 Identities=11% Similarity=-0.065 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL 375 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~ 375 (515)
+......++...+.........|.+-++.+.++.+.+. ......++..++.+..|++.||+|||+.+.
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~s~~~~gl------------~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~ 95 (438)
T PRK10133 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGII 95 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 44455555666666777778888887777766544332 566777888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHH
Q 010194 376 MGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGA 455 (515)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~ 455 (515)
.+..+..++.+++..... .+++.......+..+.+.....+....++.|..|++.|...+++.+....+|..+++
T Consensus 96 ~g~~~~~~~~~l~~~~~~-----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~ 170 (438)
T PRK10133 96 TGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAV 170 (438)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 999998888876532110 012333333333333333333445556667877777776789999999999999999
Q ss_pred HHHHHhh
Q 010194 456 FGFLYLA 462 (515)
Q Consensus 456 ~~~~~l~ 462 (515)
.+.+.+.
T Consensus 171 ~~g~~l~ 177 (438)
T PRK10133 171 VFGQSLI 177 (438)
T ss_pred HHHHHHH
Confidence 8877654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-08 Score=93.57 Aligned_cols=147 Identities=11% Similarity=0.098 Sum_probs=121.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.++...|.+.+...+.-++.-.+..++.+|+|.|+.++++..++.+=.++++++++ .+.+.+.+.+.|+-.+.
T Consensus 255 ~~g~~~~G~l~s~~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~~~~------~~~i~~~klLH~~e~~l 328 (412)
T PF01306_consen 255 GQGNQMYGYLWSVQVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGFATN------PWVISLIKLLHALEFPL 328 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT--S------HHHHHHHHHHHHHHHHH
T ss_pred ccChhHHhHHHHHHHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhhhcc------hHHHHHHHHHHHHHHHH
Confidence 456677999999999999999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccchhhHhhhhccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAA-VFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
.......|+++.+|+|..++...+ .+...++|..+.+.++|.+.+. .|.+..|++.
T Consensus 329 ~lva~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~-----------------------~G~~~tylim 385 (412)
T PF01306_consen 329 LLVAAFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR-----------------------IGFQHTYLIM 385 (412)
T ss_dssp HHHHHHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh-----------------------cCcHHHHHHH
Confidence 999999999999999988777777 4688899999999999999644 4588888875
Q ss_pred HHHHHH-HHHHHHhcCCc
Q 010194 223 AIPALL-TYYWRMKMPET 239 (515)
Q Consensus 223 ~~~~~~-~~~~~~~~~e~ 239 (515)
+...++ .++..+.+++.
T Consensus 386 g~iv~~~~li~~f~l~~~ 403 (412)
T PF01306_consen 386 GLIVLPFTLISAFTLKKD 403 (412)
T ss_dssp HHHHHHHHHHHHHHS--S
T ss_pred HHHHHHHHHHheeeecCC
Confidence 555544 45555556544
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG0569 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-08 Score=95.34 Aligned_cols=167 Identities=17% Similarity=0.126 Sum_probs=120.9
Q ss_pred hHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcC
Q 010194 40 FCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSF 119 (515)
Q Consensus 40 ~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 119 (515)
..+......+-++- |++..+..+.+....+...+..+++..+.||+|||+.++.+..+..+..+++....
T Consensus 287 ~ai~~Yst~i~~~a----------G~~~~~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~ 356 (485)
T KOG0569|consen 287 NAIFFYSTSIFKTA----------GFTPEEAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIAL 356 (485)
T ss_pred ceeHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666 89999999999999999999999999999999999999999999988887776543
Q ss_pred CCCchh-HH--HHHHHHHHHhh--hccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 010194 120 GKEPKA-VM--ITLCFFRFWLG--FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANF 194 (515)
Q Consensus 120 ~~~~~~-~~--~~l~~~r~l~G--~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 194 (515)
...... .+ +..+++.++-. ++.|. -|...-+.+|.+|++.|..++++.....-+...+-...-..+.+..+
T Consensus 357 ~l~~~~~~~~~y~~i~~~~~~~~~f~~G~-gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g--- 432 (485)
T KOG0569|consen 357 FLSNSFGSWLSYLCIAAIFLFIISFAIGP-GPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIG--- 432 (485)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhhhcCC-CchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 211101 01 12233444333 34443 48888899999999999999999888888887777776666654433
Q ss_pred CCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchh
Q 010194 195 PAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETAR 241 (515)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~ 241 (515)
- +.|++..+++++ .+..++.+||+..
T Consensus 433 --------------------~-~~filF~i~~~~~~i~~~~~lPETkg 459 (485)
T KOG0569|consen 433 --------------------P-YVFILFVIPLAIFLIYLYRYLPETKG 459 (485)
T ss_pred --------------------c-hhhHHHHHHHHHHHHHHHHhCcccCC
Confidence 2 566666666555 4556788999853
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.02 E-value=8.5e-09 Score=114.44 Aligned_cols=118 Identities=16% Similarity=0.142 Sum_probs=107.7
Q ss_pred CCchh-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDN-VASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~-~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
+.+.. +.+++.+...++..+++++.|+++||+++|+++.++.++.+++.++..+..+ .+.++++.++.|++.+
T Consensus 264 g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~ 337 (1146)
T PRK08633 264 GLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTAPS------LASVLVLFFLFGFSAG 337 (1146)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHH
Confidence 88888 9999999999999999999999999999999999988888888888887777 6888888999999999
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
...+...+++.+..|+++||+++++.+....+|.++++.+++.+.
T Consensus 338 ~~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~ 382 (1146)
T PRK08633 338 LFIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFS 382 (1146)
T ss_pred HhhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 988999999999999999999999999999999988888887764
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.01 E-value=8e-09 Score=98.72 Aligned_cols=133 Identities=11% Similarity=0.081 Sum_probs=106.0
Q ss_pred HHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHHHHHHhhhcCC
Q 010194 42 ISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM-GRKRVYGMTLMMMVICSLASGLSFG 120 (515)
Q Consensus 42 ~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~~ 120 (515)
.....|.+.++. +.+..+.+.+.+...++..+++++.|++.||+ +||+.+..+..+.+++.+...+.++
T Consensus 216 ~~~~lp~~~~~~----------g~~~~~~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (355)
T TIGR00896 216 LIGWLPAILISH----------GASAATAGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFAPM 285 (355)
T ss_pred HHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHhhh
Confidence 344566666677 88999999999999999999999999999999 5666777888888888777777655
Q ss_pred CCchhHHHHHHHHHHHhhhccccccchhhHhhhhccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010194 121 KEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN-KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFK 191 (515)
Q Consensus 121 ~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~-~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 191 (515)
.... ..-++.|++.+...+...+.+.+..+ +++++...++.+....+|..++|.+.+.+.+..+
T Consensus 286 ------~~~~-~~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 286 ------HGLW-AWALVLGLGQGGAFPLALTLIGLRSRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ------hHHH-HHHHHHHHhhhhHhHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1222 24567899999888888787766554 5667888999888888999999999999987655
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.5e-09 Score=99.71 Aligned_cols=184 Identities=13% Similarity=-0.009 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH----hhchh
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALID----KIGRF 371 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~ 371 (515)
++.+....+...+.+.....+.+.+++..|.++.. .........+..++..++.|+++| |+|||
T Consensus 6 li~~~~~~~Giq~~~~l~~~~l~~yl~~lg~~~~~------------~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRR 73 (477)
T TIGR01301 6 LLRVASVAAGVQFGWALQLSLLTPYVQELGIPHAW------------ASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRR 73 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH------------HHHHHHHHHHHHHHHHhHeeehhcCCCCCCCCh
Confidence 34444444455556666666777787777765533 222556666777888899999999 59999
Q ss_pred hHHHHH-HHHHHHHHHHHHhhhhccc------CCCc-hH---HHHHHHHHHHHHhhcCccccccccccccCchhhh--hh
Q 010194 372 AIQLMG-FFFMTVFMFALAIPYHHWT------LPDH-RI---GFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLR--ST 438 (515)
Q Consensus 372 ~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~ 438 (515)
+.++.. .....+++.++........ .... .+ ..+..+.+.....+. ..+...+++.|..|+++| +.
T Consensus 74 rp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~-~~~p~rALiaDl~p~~~~~~~~ 152 (477)
T TIGR01301 74 RPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNM-LQGPCRAFLADLTGGDARRTRI 152 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccccCchhHHHHH
Confidence 988764 4555555555544321110 0001 11 111122222222222 334556889999998765 67
Q ss_pred hhHHHHHHhhhhHHHHHHHHHHh--hhc-------------cCchHHHHHHHHHHHHHHHHHH-hccccC
Q 010194 439 CHGISAASGKAGAIVGAFGFLYL--ADT-------------SGVKKALLILGGANFLGMLFTF-LVPESK 492 (515)
Q Consensus 439 ~~g~~~~~~~~g~~i~~~~~~~l--~~~-------------~g~~~~~~~~~~~~~~~~~~~~-~~~~~~ 492 (515)
++++.+...++|+.+++.+.+.. .+. .+++..|++.+++.+++.+... ..+|..
T Consensus 153 a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 153 ANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 99999999999999999988865 221 1467788888777777777766 567754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG2504 consensus Monocarboxylate transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.3e-09 Score=105.32 Aligned_cols=176 Identities=16% Similarity=0.227 Sum_probs=151.1
Q ss_pred HHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh--hhhHH
Q 010194 24 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG--RKRVY 101 (515)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G--rr~~l 101 (515)
......++..+......+....+|...++. +.++.+.+.+.++..+...++.++.|+++|+.. ++.+.
T Consensus 299 ~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~----------g~~~~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~ 368 (509)
T KOG2504|consen 299 KFLLLALSNLFAYLGFNVPFVYLPSYAKSL----------GLSSNDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLF 368 (509)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------CCChhhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHH
Confidence 344555555666666677777888888888 999999999999999999999999999999988 55678
Q ss_pred HHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHH
Q 010194 102 GMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGM 181 (515)
Q Consensus 102 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~ 181 (515)
.+++++.+++.+.++++++ ++.++..-.+.|++.|.........+.|..+.++-..+.|+.....+++.++||+
T Consensus 369 ~~~ll~~gl~~~~~p~~~~------~~~l~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpP 442 (509)
T KOG2504|consen 369 LLTLLIAGLARLFLPFATT------YVGLIVFSILFGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPP 442 (509)
T ss_pred HHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcc
Confidence 8889999999999999999 8999999999999999988888889999999999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcC
Q 010194 182 VAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMP 237 (515)
Q Consensus 182 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~ 237 (515)
+++.+.+..++ |...|+..++..++....++..+
T Consensus 443 iag~~~d~tg~----------------------Y~~~f~~~g~~~~~s~~~~~~~~ 476 (509)
T KOG2504|consen 443 IAGLLYDITGN----------------------YDHAFYFCGLCFLLSAVLLLILR 476 (509)
T ss_pred cceeeeeccCC----------------------eeeehhhcChHHHHHHHHHHHhH
Confidence 99987644432 89999998888777766665555
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-09 Score=98.71 Aligned_cols=123 Identities=11% Similarity=0.018 Sum_probs=96.2
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcC
Q 010194 41 CISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVAL-CGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSF 119 (515)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~-l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~ 119 (515)
......|...+++ |.+.++.+.+.+... ++..++.+++|++.||+|||+.+..+.++.+++..+..+..
T Consensus 227 ~~~~~~~~~l~~~----------g~~~~~~g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~ 296 (356)
T TIGR00901 227 AATVLTTLFLLDM----------GFSKEEIALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLA 296 (356)
T ss_pred HHHHHHHHHHHHc----------CCCHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555557 899999998887766 67889999999999999999999888888877766555431
Q ss_pred -CCC----chhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHH
Q 010194 120 -GKE----PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 173 (515)
Q Consensus 120 -~~~----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 173 (515)
+.+ .....+.++.+.++.+++.+...+...+++.|.+|+++||+.+++.+...+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 297 SNGHHDGITFPHLLMLFLTITLEAVTGGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hcCcccccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 100 000157788889999999999999999999999999999999999877554
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.99 E-value=1e-06 Score=84.08 Aligned_cols=380 Identities=12% Similarity=0.045 Sum_probs=185.9
Q ss_pred HHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 010194 27 IAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLM 106 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~ 106 (515)
.+....++...+.-++....+....+.++ -+---.+...-.-.+...+..+..|.+.||..|.+++..+.+
T Consensus 6 ~Ly~sh~ls~w~dR~w~Fa~~L~L~~i~p---------~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~ 76 (432)
T PF06963_consen 6 RLYLSHFLSTWGDRMWEFAVPLFLISIFP---------GSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLV 76 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHH
Confidence 34445555555555666666666666522 122233444444556778889999999999999998877766
Q ss_pred HHHHHHHHhh------hcCCCCc---hhHHHHHHHHHHHhhhccccc-cchhhHhhhhcc------ccccchhHHHHHHH
Q 010194 107 MMVICSLASG------LSFGKEP---KAVMITLCFFRFWLGFGIGGD-YPLSATIMSEYA------NKKTRGAFIAAVFA 170 (515)
Q Consensus 107 ~~~i~~~~~~------~~~~~~~---~~~~~~l~~~r~l~G~~~g~~-~~~~~~~i~e~~------~~~~r~~~~~~~~~ 170 (515)
..-++..+++ +...... ......+++.-.+.|.-.-.. .....+.=.||. +++.+.+..+.+--
T Consensus 77 ~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~iavERDWVvvi~~~~~~~La~~NA~mRR 156 (432)
T PF06963_consen 77 VQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIAVERDWVVVIAGGDPGALARMNATMRR 156 (432)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhheeccchhhhhcCCChhhHHHHHHHHHH
Confidence 5533332222 1111100 011222233222333211111 111222223443 34445566666666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH-Hh----cCCchhhHHH
Q 010194 171 MQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR-MK----MPETARYTAL 245 (515)
Q Consensus 171 ~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~----~~e~p~~~~~ 245 (515)
.--+.-+++|++.+.+... .+.+....+.+...++.++.= ++ ....|. +
T Consensus 157 IDL~ckllaPl~vG~l~t~-----------------------~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~---L 210 (432)
T PF06963_consen 157 IDLFCKLLAPLFVGLLMTF-----------------------ASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA---L 210 (432)
T ss_pred HHHHHHHHHHHHHHHHhhc-----------------------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH---h
Confidence 6778899999999998633 446666665555554433321 11 122222 1
Q ss_pred HhccHHHHHHHHHHHHHhhhhHhhhhHHHhhc---CCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHh
Q 010194 246 VAKNAKQAAADMSKVLQVELEAEQEKVEQEKG---KNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT 322 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (515)
..+++++..+..++..+.+.+.......++.. .+.++.++.....+-...-+...+.++. .-+....+..|..
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~alalLY~T----VLsf~~lmt~yl~ 286 (432)
T PF06963_consen 211 AVKKRSSESESSSDEESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFALALLYFT----VLSFGGLMTAYLK 286 (432)
T ss_pred cCCCCCccccccccccccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHHHHHHHH----HhcCcHHHHHHHH
Confidence 11111110000000000000000000000000 0001111111111111112222222222 2222334445566
Q ss_pred HhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC--Cc
Q 010194 323 AIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP--DH 400 (515)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 400 (515)
..|+++...+. .-....+.++.|+++..++.+|+|..+.-.++......++.+..........+ ..
T Consensus 287 ~~G~s~~~igi------------~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~~~~ 354 (432)
T PF06963_consen 287 SQGYSPSVIGI------------FRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPFSSI 354 (432)
T ss_pred HCCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCchhh
Confidence 66776655333 44556677888999999999999998888888777766665555443222221 11
Q ss_pred hHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHH
Q 010194 401 RIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFG 457 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~ 457 (515)
.....+...+..-.+-.++.-...-+.+|..|+++||+..|.-+...++...+.-.+
T Consensus 355 s~~~l~~gi~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 355 SAYLLLGGIALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 122222222222233333444455677999999999999999999998877655443
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-08 Score=95.97 Aligned_cols=173 Identities=13% Similarity=0.088 Sum_probs=131.0
Q ss_pred HHHHhhhHHHHHHhhhhhhhhccCCCCCCCC-CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHH
Q 010194 34 TDAYDLFCISLVTKLLGRIYYYKEGSDSPGT-LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICS 112 (515)
Q Consensus 34 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~ 112 (515)
+.+.....+....+...++. + .+....+.+.+...++-...-...+++..|+|.|+++.++.+.+++=.
T Consensus 218 l~~~~~~~~~~f~~~yl~~~----------gg~~~~~~g~~~~l~~~aEi~~f~~~~~~~~r~g~~~ll~~a~~~~~vR~ 287 (400)
T PF03825_consen 218 LIGISHAAYYTFFSIYLQEL----------GGYSGSTIGILWALGVVAEIPFFFFSGRFLKRFGIKWLLLLALVAYAVRW 287 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHc----------ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 33433344444445445555 5 667778888888888889999999999999999999999999999988
Q ss_pred HHhhhc-CCCCchhHHHHH----HHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHH-HHHHHHHHHHHHHHHH
Q 010194 113 LASGLS-FGKEPKAVMITL----CFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFA-MQGFGILSGGMVAIIV 186 (515)
Q Consensus 113 ~~~~~~-~~~~~~~~~~~l----~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~-~~~~G~~~g~~l~~~l 186 (515)
.+.+.. ++ .+.. +....++|+..+........++.+..|++.|+++.+++.. ..++|..+|..++|++
T Consensus 288 ~l~a~~~~~------~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l 361 (400)
T PF03825_consen 288 LLYAYFSDP------WPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWL 361 (400)
T ss_pred HHHHHhcCC------cHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 888887 44 2333 3345679999999999999999999999999999999875 5689999999999999
Q ss_pred HHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCc
Q 010194 187 SAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPET 239 (515)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~ 239 (515)
.+..+. .....|...+.+.+...++..+ ...+.+|+
T Consensus 362 ~~~~g~-----------------~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 362 YDAFGA-----------------RGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHhcc-----------------hhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 887663 2345577777776666555444 33445543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.2e-08 Score=100.08 Aligned_cols=147 Identities=13% Similarity=0.187 Sum_probs=121.1
Q ss_pred HhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHH
Q 010194 30 MGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMV 109 (515)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~ 109 (515)
+..++............+...++.. +.+ ...+.+.....++..++.+++++++||+|+|+++..+..+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~y~~~~vl---------~~~-~~~~~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~ 301 (428)
T PF13347_consen 232 LAFFLQWLAFALMNTFLPYYFTYVL---------GNE-GLISIFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAA 301 (428)
T ss_pred HHHHHHHhhhhhhhhHHHHHHHHHh---------cCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHH
Confidence 3344444455555556666666551 232 567888889999999999999999999999999999999999
Q ss_pred HHHHHhhhcC--CCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccc-------ccchhHHHHHHHHHHHHHHHHH
Q 010194 110 ICSLASGLSF--GKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANK-------KTRGAFIAAVFAMQGFGILSGG 180 (515)
Q Consensus 110 i~~~~~~~~~--~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~g~ 180 (515)
++.++..+.+ + .+.+++.-++.|++.+.......++++|..+. ++.|...+.......+|..+++
T Consensus 302 ~~~~~~~~~~~~~------~~~~~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~ 375 (428)
T PF13347_consen 302 LGFLLLFFLGPGS------PWLVLILFILAGIGYGAFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAG 375 (428)
T ss_pred HHHHHHHHHHhhh------HHHHHHHHHHhHhhhcccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHH
Confidence 9999988886 5 79999999999999999999999999998873 3358889999999999999999
Q ss_pred HHHHHHHHhhhc
Q 010194 181 MVAIIVSAAFKA 192 (515)
Q Consensus 181 ~l~~~l~~~~~~ 192 (515)
.+.+.+....+.
T Consensus 376 ~i~g~~l~~~Gy 387 (428)
T PF13347_consen 376 AIVGLLLALVGY 387 (428)
T ss_pred HHHHHHHHHhCc
Confidence 999988877664
|
|
| >KOG2615 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.6e-09 Score=94.20 Aligned_cols=113 Identities=15% Similarity=0.048 Sum_probs=89.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccc
Q 010194 342 IARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNT 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (515)
.+........+...+.++..|.++||+|||.++..+.+..++...+.+... +....+..=+..+.+. +..+
T Consensus 69 yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~--------~F~afv~aR~l~Gi~k-gnl~ 139 (451)
T KOG2615|consen 69 YAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSR--------NFAAFVLARFLGGIFK-GNLS 139 (451)
T ss_pred hhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHhhhhcc-CchH
Confidence 344477778888999999999999999999999999888888777766544 2222222123333333 3456
Q ss_pred cccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh
Q 010194 422 TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~ 463 (515)
+..++++|++++++|+.+++.++....+|.++||.+.|++..
T Consensus 140 v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~ 181 (451)
T KOG2615|consen 140 VIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQ 181 (451)
T ss_pred HHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHh
Confidence 778999999999999999999999999999999999999976
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=3e-08 Score=98.37 Aligned_cols=167 Identities=10% Similarity=0.083 Sum_probs=105.3
Q ss_pred HHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHH
Q 010194 306 LDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFM 385 (515)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 385 (515)
.....|....+.+.+.++.|++..+.+. +.. ...... ...+..|++.||+|+|+++.++.++..++.
T Consensus 39 ~~g~~y~fsv~s~~L~~~lgls~~~l~~-----------i~s-vg~~~g-~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ 105 (591)
T PTZ00207 39 CTSFMYAFNLISGAMQARYNLTQRDLST-----------ITT-VGIAVG-YFLLPYSFIYDYLGPRPIFVLSMTVFCLGT 105 (591)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHHH-----------HHH-HHHHHH-HHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 3445567778888888888877654221 111 111122 244568999999999999999999999999
Q ss_pred HHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc
Q 010194 386 FALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS 465 (515)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~ 465 (515)
++.++...... ..+.+.+.+...+.+.+.....+.....+.+.+| ++||.+.|+......+|+++.+.+...+.. .
T Consensus 106 ll~ala~~~~i--~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~ 181 (591)
T PTZ00207 106 LLFALTFQEVI--EGSVVRLSVYNGLMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-D 181 (591)
T ss_pred HHHHHHhcccc--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 88877531100 0122222222223333332233444556678887 789999999999999999865555544443 3
Q ss_pred CchHHHHHHHHHHHHHHHHHH-hcc
Q 010194 466 GVKKALLILGGANFLGMLFTF-LVP 489 (515)
Q Consensus 466 g~~~~~~~~~~~~~~~~~~~~-~~~ 489 (515)
+++..|++.+++.++..++.+ +++
T Consensus 182 ~~~~~fl~l~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 182 NTSAYFFFLMSFALVVGILAIVFMR 206 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhee
Confidence 567777777777776666555 443
|
|
| >KOG3764 consensus Vesicular amine transporter [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.3e-09 Score=97.24 Aligned_cols=137 Identities=20% Similarity=0.153 Sum_probs=115.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......+..++..++.|.+.||+|+|..+++|++++..+.+++++.. .+...++.=...+.+..+......+
T Consensus 111 LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~--------sy~~l~vAR~LQgvgsA~~~tsgla 182 (464)
T KOG3764|consen 111 LFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGN--------SYPMLFVARSLQGVGSAFADTSGLA 182 (464)
T ss_pred HHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcc--------hhHHHHHHHHHhhhhHHHHHhhhHH
Confidence 56667778888999999999999999999999999999999988765 3444555555555555556667788
Q ss_pred cccccCchhh-hhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 426 VPAEIFPARL-RSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 426 ~~~~~~p~~~-~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
++++.+|++. |++++|+.-.+..+|-.+||.+.|.++|..|++..|.++++++++-..+-+++-+
T Consensus 183 mlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~ 248 (464)
T KOG3764|consen 183 MLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE 248 (464)
T ss_pred HHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence 9999999765 6999999999999999999999999999999999999999999998888775433
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.8e-08 Score=94.83 Aligned_cols=120 Identities=18% Similarity=0.167 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchh
Q 010194 69 VASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLS 148 (515)
Q Consensus 69 ~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~ 148 (515)
..+.+.....+...++.+++++++||+|+|+.+..+.++.++..+...+.+. ++.+.+++..++.|++.+...+..
T Consensus 265 ~~~~~~~~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~g~~~~~~~~~~ 340 (444)
T PRK09669 265 LATLFLVTGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPP----SNVWLIFALNILFNFIQNLTTPLQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCc----chHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677888889999999999999999998888766654443333221 116777888899999999999999
Q ss_pred hHhhhhcccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010194 149 ATIMSEYANK-------KTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKA 192 (515)
Q Consensus 149 ~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 192 (515)
.++++|..+. +..|...+.......+|..+|+.+++.+.+..+.
T Consensus 341 ~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy 391 (444)
T PRK09669 341 WSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY 391 (444)
T ss_pred HHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999998862 2345677888889999999999999999887764
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.2e-08 Score=110.82 Aligned_cols=118 Identities=16% Similarity=0.094 Sum_probs=102.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhc--------------------CCCCc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLS--------------------FGKEP 123 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~--------------------~~~~~ 123 (515)
+.+..+.|++.+.+.++..+++++.|+++|+.++++.+..+.++.+++.+..++. .+
T Consensus 257 g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--- 333 (1140)
T PRK06814 257 GGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRH--- 333 (1140)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccc---
Confidence 8899999999999999999999999999999888877766666666655544442 33
Q ss_pred hhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 124 KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 124 ~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
.+.+++..++.|++.+...+...+++.+.+|+++||+++|+.+....+|..+++++.+.+.
T Consensus 334 ---~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~ 394 (1140)
T PRK06814 334 ---GWRILIDLFGLAAAGGLYIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQ 394 (1140)
T ss_pred ---cHHHHHHHHHHHHHHHHhHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999999999999999999999999999999999999988885
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-08 Score=89.90 Aligned_cols=161 Identities=25% Similarity=0.382 Sum_probs=127.1
Q ss_pred HHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCch--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHH
Q 010194 33 FTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPD--NVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVI 110 (515)
Q Consensus 33 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~--~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i 110 (515)
+....+........+.+..++ +.+. ...++..+.+.++..++.++.|.++||+|||+.+..+.....+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 81 (338)
T COG0477 12 LLLGLDLGLLSPALPLLLSTL----------SLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLL 81 (338)
T ss_pred HHHHHhcchHHHHHHHHHHHc----------CCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHH
Confidence 333366666677777777777 5554 5789999999999999999999999999999888888876666
Q ss_pred HHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccc-ccchhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 010194 111 CSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANK-KTRGAFIAAVFA-MQGFGILSGGMVAIIVSA 188 (515)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~-~~~~G~~~g~~l~~~l~~ 188 (515)
+.++.++..+ ...+.+++.|+++|++.+...+...+++.|+.|+ ++|+...+.... ...+|..+++.+++.+..
T Consensus 82 ~~~~~~~~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T COG0477 82 GTLLLALAPN----VGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLG 157 (338)
T ss_pred HHHHHHhCcc----chHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665 1178999999999999999999999999999998 678999998888 588899999988877754
Q ss_pred hhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH
Q 010194 189 AFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL 228 (515)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~ 228 (515)
. ...+||..|.+.......
T Consensus 158 ~---------------------~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 158 A---------------------LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred H---------------------HhcchHHHHHHHHHHHHH
Confidence 3 124599966665555433
|
|
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.88 E-value=7e-07 Score=83.64 Aligned_cols=137 Identities=11% Similarity=-0.000 Sum_probs=97.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhh
Q 010194 70 ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSA 149 (515)
Q Consensus 70 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 149 (515)
.+.+.-+-.+...+..+.+.++.+|+..+.=+.....++.++.++.+++++ .+.=+++-.+.+++.|.......
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~------v~~~l~Gv~las~ssg~GE~tfL 134 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPS------VWVRLLGVVLASLSSGLGEVTFL 134 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccc------hhHHHHHHHHHhhhhhhhHHHHH
Confidence 455666666777788888889999987655566667788889999999988 78888999999999998888888
Q ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH
Q 010194 150 TIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT 229 (515)
Q Consensus 150 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 229 (515)
.+.. .+++ ...+-+..+.+.+.++|+..-..+.. .+ ..-|..+++...+.++.
T Consensus 135 ~lt~-~y~~----~~l~~wssGTG~aGl~Ga~~y~~lT~-~g---------------------~s~~~tll~~~~lp~~~ 187 (402)
T PF02487_consen 135 SLTH-FYGK----SSLSAWSSGTGGAGLVGALYYLGLTT-LG---------------------LSPRTTLLIMLVLPAIF 187 (402)
T ss_pred HHHH-hcCc----cccccccCCcChhhHHHHHHHHHHHH-hC---------------------cCHHHHHHHHHHHHHHH
Confidence 7754 5553 35677777788888888877766654 22 23577777765555444
Q ss_pred HHH-HHhcCCc
Q 010194 230 YYW-RMKMPET 239 (515)
Q Consensus 230 ~~~-~~~~~e~ 239 (515)
.+. ++.+|.+
T Consensus 188 ~~~~f~~L~~~ 198 (402)
T PF02487_consen 188 LLSYFFLLPSP 198 (402)
T ss_pred HHHHHHhhccc
Confidence 443 3445543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-08 Score=96.33 Aligned_cols=137 Identities=14% Similarity=0.077 Sum_probs=114.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
.......+.+++.+.++++.||+|-|+++..+.++.+++.++..+.... ....+++.=++.++......|....
T Consensus 78 i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------~~~~~~~~R~lqGl~~g~~~pa~~~ 151 (466)
T KOG2532|consen 78 IFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------GFYLLLVLRFLQGLGQGVLFPAIGS 151 (466)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------cchhhHHHHHHhHHHHhHHHhhhhc
Confidence 5556667888899999999999999999999999999998888876621 1223444445555555556788888
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc-cCchHHHHHHHHHHHHHHHHHHhc
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT-SGVKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
+..+-.|+++|++..++.....++|.+++-.+.|.+.+. .||+..|++.+++.++..++++++
T Consensus 152 i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~ 215 (466)
T KOG2532|consen 152 ILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF 215 (466)
T ss_pred eeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998 999999999999998888877733
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.86 E-value=7.5e-05 Score=72.48 Aligned_cols=123 Identities=7% Similarity=-0.030 Sum_probs=89.0
Q ss_pred chhHHHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhc----CCCCch-------------h--
Q 010194 66 PDNVASAVNGVALCGTLAG-QLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLS----FGKEPK-------------A-- 125 (515)
Q Consensus 66 s~~~~g~~~s~~~l~~~i~-~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~----~~~~~~-------------~-- 125 (515)
+.+.+.++-+...+..++. .++.+++++|++|++++-.....+....+++++. .+.-++ +
T Consensus 41 gae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~ 120 (472)
T TIGR00769 41 GAEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFM 120 (472)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhH
Confidence 3467888888887877766 9999999999999999887777776666666554 111000 0
Q ss_pred ------HHHHHHHHHHHhhhccccccc-hhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 126 ------VMITLCFFRFWLGFGIGGDYP-LSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSA 188 (515)
Q Consensus 126 ------~~~~l~~~r~l~G~~~g~~~~-~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 188 (515)
..|...+..+...+-...... .-..+++|.++.+|-.|..+++..+.++|.++++.+...+.+
T Consensus 121 ~~i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 121 GFIAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012333333444444444444 677899999999999999999999999999999988888764
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=7.1e-08 Score=95.22 Aligned_cols=132 Identities=14% Similarity=0.091 Sum_probs=93.1
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++..+..++.|+++|.+|||+.++.+.++..++.++.+... +....+....+.+.. .+.......
T Consensus 83 ~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~--------~~~~~iag~~l~Gvg-aG~~~~~~~ 153 (599)
T PF06609_consen 83 FSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQ--------NMNTFIAGMVLYGVG-AGVQELAAL 153 (599)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCC--------cHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 44445566777778999999999999999999999999998876544 122222222222222 233334455
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
.++|..|.+.|..+.++.....-.....++.+...+....+|++.|++..+...++.+..+
T Consensus 154 ~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~ 214 (599)
T PF06609_consen 154 AISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIF 214 (599)
T ss_pred HHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHH
Confidence 6799999999988887776655555556777777776677899999988887777766555
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-08 Score=97.93 Aligned_cols=159 Identities=9% Similarity=0.069 Sum_probs=124.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCc----hhHHHHHHHHHHHhhh
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEP----KAVMITLCFFRFWLGF 139 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~ 139 (515)
|.++.+.|.+.....++..++....+++.+|++.|+++.++.++.+++.+......+... ....+.++..-++.++
T Consensus 284 G~s~~~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~~~~~~~~l~~~ 363 (468)
T TIGR00788 284 PGGPSFSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEVFVLGDSIIAEV 363 (468)
T ss_pred CCCcchhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCeeeeeehhHHHHH
Confidence 899999999999999999999999999999999999999999999988866542211000 0002455666788888
Q ss_pred ccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHH
Q 010194 140 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIIL 219 (515)
Q Consensus 140 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f 219 (515)
+.+........++.+.+|+++++...++.....++|..+++.+++.+.+..+.. .++++.++..
T Consensus 364 ~~g~~~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~----------------~~~~~~~~~~ 427 (468)
T TIGR00788 364 LAQLKFMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGIT----------------CDNSNNLWLL 427 (468)
T ss_pred HHHHHHccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC----------------cccccchHHH
Confidence 888889999999999999999999999999999999999999999999887731 2333344444
Q ss_pred HH-hHHHHHHHHHHHHhcCC
Q 010194 220 MF-GAIPALLTYYWRMKMPE 238 (515)
Q Consensus 220 ~~-~~~~~~~~~~~~~~~~e 238 (515)
++ +.+..++.+...+++|+
T Consensus 428 i~i~~~~~l~~l~~~~llP~ 447 (468)
T TIGR00788 428 ILGHSLAPLLPLPLLHLLPR 447 (468)
T ss_pred HHHHHHHHHHHHHHHHhCCC
Confidence 33 45555555555568886
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG4686 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.3e-08 Score=84.20 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=110.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH-HHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTL-MMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~-~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
|+|+...+.+.+....-.++.+++.|.++||+|++-..+.+. +...++-....++. +.=+++..+.|+...
T Consensus 296 GlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft~--------lsPy~~m~~lGLsys 367 (459)
T KOG4686|consen 296 GLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFTF--------LSPYTSMTFLGLSYS 367 (459)
T ss_pred CCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhhh--------ccHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999997765544 44445555544442 333567778888877
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHH-
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMF- 221 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~- 221 (515)
.........++...|+++.|++.+..+...++|.++.|++++.+.+..+ .+.|--.|.+
T Consensus 368 llAcslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g--------------------~y~~le~ffl~ 427 (459)
T KOG4686|consen 368 LLACSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG--------------------SYDNLEAFFLI 427 (459)
T ss_pred HHHHHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC--------------------chhhHHHHHHH
Confidence 7666677788889999999999999999999999999999999864322 2456666655
Q ss_pred hHHHHHHHHHHHHhc
Q 010194 222 GAIPALLTYYWRMKM 236 (515)
Q Consensus 222 ~~~~~~~~~~~~~~~ 236 (515)
.+..++....+.+.+
T Consensus 428 ~~~~aL~svgil~~~ 442 (459)
T KOG4686|consen 428 IGLMALTSVGILFYL 442 (459)
T ss_pred HHHHHHHHHHHHhhe
Confidence 444555555444444
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.9e-07 Score=87.66 Aligned_cols=162 Identities=16% Similarity=0.230 Sum_probs=121.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.++.+..+.......+..++.+++.++++|+|+|+++..+.++..++.++..+.+. ++.+.+++..++.+++.+.
T Consensus 268 g~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~~----~~~~l~~~~~~i~~~g~~~ 343 (467)
T COG2211 268 GDPELFAYLLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTPA----GSVVLIVVALIIAGVGTGI 343 (467)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhcC----cchHHHHHHHHHHHHHhhc
Confidence 566667778888888888888999999999999999999999999999999998873 1278889999999999999
Q ss_pred ccchhhHhhhhcccc-------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCC-ccccCCCchH
Q 010194 144 DYPLSATIMSEYANK-------KTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAA-STVPEADYIW 215 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~-------~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~w 215 (515)
..+...++++|..+- +.-|...+......=+|.+++..+.+++....+.. |.. .+.+....|-
T Consensus 344 ~~~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~Gyv---------~~~~~Q~~~al~gI 414 (467)
T COG2211 344 ANPLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIGYV---------PNVSAQSASALFGI 414 (467)
T ss_pred cccccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---------CCcccCCHHHHHHH
Confidence 999999999887643 23367777888888899999998888888776642 111 1112233455
Q ss_pred HHHHHH-hHHHHHHHHHHHHhcCC
Q 010194 216 RIILMF-GAIPALLTYYWRMKMPE 238 (515)
Q Consensus 216 r~~f~~-~~~~~~~~~~~~~~~~e 238 (515)
+..+.+ .++..++.++...+.|-
T Consensus 415 ~~~~~~~Pa~l~l~~~i~~~~y~L 438 (467)
T COG2211 415 RFLFIILPALLLLLAAIIIFFYKL 438 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC
Confidence 666555 45555555554445443
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-08 Score=94.29 Aligned_cols=133 Identities=11% Similarity=0.079 Sum_probs=99.8
Q ss_pred HHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh----hhhhhHHH-HHHHHHHHHHHHhhhc
Q 010194 44 LVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK----MGRKRVYG-MTLMMMVICSLASGLS 118 (515)
Q Consensus 44 ~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr----~Grr~~l~-~~~~~~~i~~~~~~~~ 118 (515)
..++++.++. +++....+.+--...+...+.+++.|..+|| +||||.++ .+.....++.++..++
T Consensus 53 sy~tPyl~~l----------Gvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~a 122 (498)
T KOG0637|consen 53 SYLTPYLQSL----------GVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYA 122 (498)
T ss_pred ccccHHHHHc----------CCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhH
Confidence 4455666677 8888888888888888889999999999995 89988755 4555566677777766
Q ss_pred CCCC--------c---hhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchh-HHHHHHHHHHHHHHHHHHHHHHH
Q 010194 119 FGKE--------P---KAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGA-FIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 119 ~~~~--------~---~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~-~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
.+.. . ......++++--+.=++.......+-+++.|.+.++++.+ +.+.+....++|..+|..++++.
T Consensus 123 aDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~ 202 (498)
T KOG0637|consen 123 ADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL 202 (498)
T ss_pred hhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence 5421 0 0112345555666667777788999999999998777766 99999999999999999888744
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.6e-07 Score=81.32 Aligned_cols=151 Identities=12% Similarity=0.070 Sum_probs=98.0
Q ss_pred hhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-----
Q 010194 19 WYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGD----- 93 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d----- 93 (515)
+.....+..+.+.+..++.-.+..+ .+|.+.+.- +.|.++.+...-++. . ..--++|.++.|
T Consensus 27 ~~d~~~illLl~LYllQGiP~GL~~-~iP~lL~ak----------~vSyt~~a~fS~ay~-P-~sLKllWaPiVDs~y~k 93 (510)
T KOG3574|consen 27 KGDRSSILLLLFLYLLQGIPLGLIG-AIPLLLQAK----------GVSYTSQAIFSFAYW-P-FSLKLLWAPIVDSVYSK 93 (510)
T ss_pred hhhhhhHHHHHHHHHHcCCchhHhh-hhHHHhcCC----------Ccchhhhhhhhhhhh-H-HHHHHHHHhhhHHHHHH
Confidence 3445566777778888898888888 889888766 888887765543321 1 334678999999
Q ss_pred hhhhhhHH-HHHHHHHHHHHHHhhhcCCCC-----chhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHH
Q 010194 94 KMGRKRVY-GMTLMMMVICSLASGLSFGKE-----PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAA 167 (515)
Q Consensus 94 r~Grr~~l-~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~ 167 (515)
|+||||.. +-+..+.+..+.+.+.-.+.. ...+...+...-++.-+..+.-..+...+.-.+..+++-|-+...
T Consensus 94 ~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALtmLs~e~lgyaST~ 173 (510)
T KOG3574|consen 94 RFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALTMLSRENLGYASTC 173 (510)
T ss_pred hhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCHhhcCchhHH
Confidence 99999863 334444444444444332211 011122333445666677777778888888888888888888776
Q ss_pred HHHHHHHHHHHHHHH
Q 010194 168 VFAMQGFGILSGGMV 182 (515)
Q Consensus 168 ~~~~~~~G~~~g~~l 182 (515)
...+.+.|..++..+
T Consensus 174 q~Vg~~~GyfL~~~i 188 (510)
T KOG3574|consen 174 QSVGQTAGYFLGNVV 188 (510)
T ss_pred HHHHHhhhHHhhcce
Confidence 666666666655544
|
|
| >KOG0255 consensus Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.7e-08 Score=97.44 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=111.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
...+..++..+|.++.|.++||+|||++++.+.++..++.+..++.. ++....+.=++.+++..+...+.+.
T Consensus 123 ~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~--------~~~~~~~~Rfl~G~~~~~~~~~~~~ 194 (521)
T KOG0255|consen 123 GQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAP--------NYWMFLIFRFLSGFFGSGPLTVGFG 194 (521)
T ss_pred HHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhC--------cHHHHHHHHHHHHhhccchhHHhHh
Confidence 56677788899999999999999999999999999999887776654 4455555556666666667778889
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccccC
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPESK 492 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (515)
+..|.++++.|+.+..+ ....+.++.+++...+++.. +|+..+++..+..++..+..++.+|.+
T Consensus 195 ~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~ 258 (521)
T KOG0255|consen 195 LVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESP 258 (521)
T ss_pred hheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcCh
Confidence 99999999999999999 88888999999999999976 899998888887777766654554543
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.2e-07 Score=83.46 Aligned_cols=171 Identities=17% Similarity=0.119 Sum_probs=110.0
Q ss_pred HHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHH
Q 010194 305 LLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVF 384 (515)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 384 (515)
......|....|.|.+-+..++++++.+. ......++.-+| +..|.+.|++|.+.++.++.....++
T Consensus 13 ~~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~------------l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~G 79 (250)
T PF06813_consen 13 LCSGTTYTFSAYSPQLKSRLGYSQSQLNT------------LSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVG 79 (250)
T ss_pred HhcCcccchhhhhHHHHHHhCCCHHHHHH------------HHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33456677888899998888888776443 445555555554 68899999999999999999999999
Q ss_pred HHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc
Q 010194 385 MFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT 464 (515)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~ 464 (515)
...+.......... .+.+.+.++....+......+........+.+| ++||++.|+.-....+++.+-..+...+.+.
T Consensus 80 Y~~~~l~~~~~i~~-~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~ 157 (250)
T PF06813_consen 80 YGLLWLAVSGRIPS-LPVWLMCLFLFLGGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD 157 (250)
T ss_pred HHHHHHHHhCccCc-cchHHHHHHHHHHcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence 98887765322211 223333333333322222223333344567888 6899999999999999999888888877654
Q ss_pred cCchHHHHHHHHH-HHHHHHHHHhcccc
Q 010194 465 SGVKKALLILGGA-NFLGMLFTFLVPES 491 (515)
Q Consensus 465 ~g~~~~~~~~~~~-~~~~~~~~~~~~~~ 491 (515)
+....+.+.+.. .+++.+..++++..
T Consensus 158 -~~~~fll~la~~~~~v~l~~~~~vr~~ 184 (250)
T PF06813_consen 158 -DPSSFLLFLAVLPAVVCLVAMFFVRPV 184 (250)
T ss_pred -ChHHHHHHHHHHHHHHHHHHhhheecc
Confidence 333333333333 33333344455443
|
|
| >KOG0253 consensus Synaptic vesicle transporter SV2 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.2e-08 Score=86.02 Aligned_cols=101 Identities=16% Similarity=0.259 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcc
Q 010194 77 ALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYA 156 (515)
Q Consensus 77 ~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~ 156 (515)
..+.-.-|.++.+.+.||+|||+.+..+.+++++..++.....+.+.. -..++.+|++. .+.+.+.+.|..|.+
T Consensus 390 tslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~--tvllf~arafi----sg~fqvaYvYtPEVy 463 (528)
T KOG0253|consen 390 TSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAY--TVLLFTARAFI----SGAFQVAYVYTPEVY 463 (528)
T ss_pred HHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchh--HHHHHHHHHHH----hchheEEEEecCccc
Confidence 345567789999999999999999999999999999888776653110 23455666554 344678889999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHHH
Q 010194 157 NKKTRGAFIAAVFAMQGFGILSGGMVA 183 (515)
Q Consensus 157 ~~~~r~~~~~~~~~~~~~G~~~g~~l~ 183 (515)
|.+-|+...|.-....-+|.++.|+++
T Consensus 464 PTavRatgvGtcSsmaRIggI~~p~iA 490 (528)
T KOG0253|consen 464 PTAVRATGVGTCSSMARIGGIFSPVIA 490 (528)
T ss_pred chhhhhcchhhhhhHHhhhhhhhhHHH
Confidence 999999999999999999999999998
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.6e-07 Score=73.38 Aligned_cols=110 Identities=16% Similarity=0.136 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhH
Q 010194 71 SAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSAT 150 (515)
Q Consensus 71 g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~ 150 (515)
-.-.++.+....+++++.+.+.+++|.|+.+++|.+...+-.+.. +-++ .+.++.+-.+.|++.+..+.....
T Consensus 40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~------~~~l~~~s~l~G~~~a~lW~aqg~ 112 (156)
T PF05978_consen 40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPN------SYTLYPASALLGFGAALLWTAQGT 112 (156)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-Hhhh------HHHHHHHHHHHhhhhHHhhHhhhH
Confidence 344556666778888889999999999999999999988655544 4445 689999999999999999999999
Q ss_pred hhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 151 IMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 151 ~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
++.+..++++|++..+++......+.++|.++...+.
T Consensus 113 ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 113 YLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred HHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988887763
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.4e-08 Score=90.21 Aligned_cols=183 Identities=11% Similarity=-0.023 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-hchhhH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK-IGRFAI 373 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~ 373 (515)
.++.+...-+.--+.+|++...+..|+... ..+. .+.+...... ....+....-+..+++||++|| +|+|+.
T Consensus 22 ~l~~if~vE~WERFsyYGmraiL~~Yl~~~-~~~g-Lg~~~~~A~~-----l~~~y~slVY~t~i~GG~laDr~LG~~~t 94 (498)
T COG3104 22 GLYLIFFVELWERFSYYGMRAILILYLYYQ-LGDG-LGFDETHATG-----LFSAYGSLVYLTPIIGGWLADRVLGTRRT 94 (498)
T ss_pred hHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-cccc-CCcChHhhHH-----HHHHHHHHHHHHHHHHHHHHHHhcchhHH
Confidence 344455555555577888776666665541 1111 3333332222 2222222223355688999999 599999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchh--hhhhhhHHHHHHhhhhH
Q 010194 374 QLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR--LRSTCHGISAASGKAGA 451 (515)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~g~~~~~~~~g~ 451 (515)
+..+.+++.++.+++.... ..... .+.+.......+....-+....++.|.+|++ +|-.+.++..+..++|+
T Consensus 95 I~lGail~~iGh~~L~~~~-----~~~~~-gl~i~L~~I~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGs 168 (498)
T COG3104 95 IVLGAILMAIGHLVLAISS-----VSGPG-GLYIGLALIIVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGS 168 (498)
T ss_pred HHHHHHHHHHHHHHHhccc-----ccccc-HHHHHHHHHHhccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHH
Confidence 9999999999999987653 01112 2222233333444455667778889998753 36778888899999999
Q ss_pred HHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhccc
Q 010194 452 IVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPE 490 (515)
Q Consensus 452 ~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 490 (515)
.++|.+.+++.+..||...|...++-..++.+.+++.++
T Consensus 169 l~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~~r 207 (498)
T COG3104 169 LIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLGRR 207 (498)
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHccc
Confidence 999999999999999999999999888888887776554
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-06 Score=85.45 Aligned_cols=120 Identities=22% Similarity=0.167 Sum_probs=84.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccch
Q 010194 68 NVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPL 147 (515)
Q Consensus 68 ~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~ 147 (515)
...+.+.+.+.++..++.+++++++||+|+|+++..+..+.++..++..+.++.+ ...+++.-++.|++.+...+.
T Consensus 263 ~~~~~~l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~g~~~~~~~~l 338 (460)
T PRK11462 263 EVFVAFLTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQA----SITMFVFIFVIGVLHQLVTPI 338 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3456677788889999999999999999999987766555544444443333310 223444556678877776676
Q ss_pred hhHhhhhccc-------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010194 148 SATIMSEYAN-------KKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFK 191 (515)
Q Consensus 148 ~~~~i~e~~~-------~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~ 191 (515)
..+++.|..+ +++.|...+......-+|..+|+.+++.+....+
T Consensus 339 ~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 339 QWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 6778887766 2333555677778889999999999998887655
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=67.05 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=72.6
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 010194 35 DAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLA 114 (515)
Q Consensus 35 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~ 114 (515)
.+..+..+++++|.+.+|. ++|.++.|++.+..++||.+|++...++.++..+++.+..+++...+..+.
T Consensus 4 mGigRFayTplLP~M~~~~----------~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 4 MGIGRFAYTPLLPLMQADG----------GLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA 73 (85)
T ss_pred hhhHHHHHHhHhHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999 999999999999999999999999999999988899999999999999999
Q ss_pred hhhcCC
Q 010194 115 SGLSFG 120 (515)
Q Consensus 115 ~~~~~~ 120 (515)
+++.++
T Consensus 74 ma~~~~ 79 (85)
T PF06779_consen 74 MALTHS 79 (85)
T ss_pred HHHHhc
Confidence 999988
|
Note that many members are hypothetical proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.1e-06 Score=79.51 Aligned_cols=154 Identities=16% Similarity=0.206 Sum_probs=121.0
Q ss_pred hhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHhhh
Q 010194 39 LFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVYGMTLMMMVICSLASGL 117 (515)
Q Consensus 39 ~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~ 117 (515)
.++.-.-+|.+..|- |+|..+.|++.+...+.....++....+++| -++|+..+....++.++.+.+.+
T Consensus 224 ~Y~~~~WLP~ili~~----------G~sa~~aG~llsl~~l~~~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~ 293 (395)
T COG2807 224 YYIVIGWLPAILIDR----------GLSAAEAGSLLSLMQLAQLPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLLL 293 (395)
T ss_pred HHHHHHHHHHHHHHc----------CCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHH
Confidence 344456678888888 9999999999999999999999999999996 45778888888888888888888
Q ss_pred cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 010194 118 SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANK-KTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPA 196 (515)
Q Consensus 118 ~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~-~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~ 196 (515)
.+.. ..+..-++.|+|.|..++.+...+.+..+. ++-++..++.+....+=...||.+.|++-+.+++
T Consensus 294 ~P~~-------~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gs---- 362 (395)
T COG2807 294 APGQ-------LPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGS---- 362 (395)
T ss_pred hhhh-------HHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCC----
Confidence 8772 222225899999999999999999988864 4455666666666666677789999998765554
Q ss_pred CccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH
Q 010194 197 PIYSANPAASTVPEADYIWRIILMFGAIPALLTYY 231 (515)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~ 231 (515)
|+...+..+...++..+
T Consensus 363 ------------------w~~~~~~l~~~~i~m~i 379 (395)
T COG2807 363 ------------------WSAPLVLLALATLLMLI 379 (395)
T ss_pred ------------------hHHHHHHHHHHHHHHHH
Confidence 99988876655554433
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.9e-06 Score=74.14 Aligned_cols=86 Identities=15% Similarity=0.088 Sum_probs=64.6
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+....++|.+.-..+-...+...+.|-++|+-|||+.-+.-++...++++ .-.+++ +-.++++|.+-|++.+.
T Consensus 68 gFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi-TKhSpq------YkVLmVGR~LGGiaTsL 140 (454)
T KOG4332|consen 68 GFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI-TKHSPQ------YKVLMVGRVLGGIATSL 140 (454)
T ss_pred CccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH-hhcCCc------eEEEeehhhhhhHHHHH
Confidence 77778888888777777888889999999999999975554444444332 233455 67899999999999888
Q ss_pred ccchhhHh-hhhcc
Q 010194 144 DYPLSATI-MSEYA 156 (515)
Q Consensus 144 ~~~~~~~~-i~e~~ 156 (515)
.+...-++ +.|.-
T Consensus 141 LFSaFEsWliaEHn 154 (454)
T KOG4332|consen 141 LFSAFESWLIAEHN 154 (454)
T ss_pred HHHHHHHHHHHHhh
Confidence 88777665 45544
|
|
| >KOG3810 consensus Micronutrient transporters (folate transporter family) [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=80.54 Aligned_cols=369 Identities=13% Similarity=0.099 Sum_probs=197.8
Q ss_pred CCchhHHH-HHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVAS-AVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g-~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
++++.++. -+.=...-.+.+.-++.=.+.|..-.|++++.-.+.......+..+.++ .+.+=+.-++-|...+
T Consensus 37 NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~s------V~~mQvlE~FyG~~tA 110 (433)
T KOG3810|consen 37 NLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPS------VKAMQVLEFFYGPATA 110 (433)
T ss_pred CccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCC------chheeeehhhcChHHH
Confidence 55554443 3333444556677777778999998999998888888888888888888 7888888889998766
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
. ..+-++++-+..+++++.++.+.--+..-.|-..|..++..+... +..++...-.+.
T Consensus 111 a-EIAYysYIYs~Vd~~~Yqrvt~y~RaA~L~g~~~g~vlaQlLvs~---------------------~~~sy~~LN~IS 168 (433)
T KOG3810|consen 111 A-EIAYYSYIYSKVDPEMYKRVTGYCRAAFLVGKFVGSVLAQLLVSL---------------------ETLSYTTLNYIS 168 (433)
T ss_pred H-HHhhhheeeeecCHHHHHHHHHHhHHHHHHHhHHHhHHHHHHhhh---------------------cccchhhhchhh
Confidence 5 678889999999999999999998888888888888888777532 334466666665
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHH
Q 010194 223 AIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVT 302 (515)
Q Consensus 223 ~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (515)
.....+...+..++|..++....++++++....++++. +.+.+..+..+......++.++.-..++ .++.-.+-
T Consensus 169 L~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~v~~~e~~---~~~~~~~~~l~~~~~~l~~~l~~~y~np---~ll~WSlW 242 (433)
T KOG3810|consen 169 LAEVTIAVLLALFLPRVKRSLYFHRLEDKISVGDLEEM---NPQASYMSYLRGAFVLLWRDLQECYSNP---RLLKWSLW 242 (433)
T ss_pred HHHHHHHHHHHhhCCCCchhhhhhcccccceeccchhc---CccchhhHHHHHHHHHHHHHHHHHhcCc---hhhhhHHH
Confidence 55556666777788887755322222211110000000 0000000000000001111111111111 22223333
Q ss_pred HHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHH--HHHHH
Q 010194 303 WFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQL--MGFFF 380 (515)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~--~~~~~ 380 (515)
|.....+++....+...+.++.. +..... ..|. .=.+....+.++.+..|++.-++.|..-+. ++...
T Consensus 243 wAl~scg~~QV~nY~Q~LW~~~~--~~~~~v-------yNG~-veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~~s~~ 312 (433)
T KOG3810|consen 243 WALASCGYYQVTNYTQILWKEVA--PNPANV-------YNGA-VEAVSTLLGAIAALAAGYLNINWNRWGDLLLAVGSAV 312 (433)
T ss_pred HHHhhchhHHHHHHHHHHHHhhC--CCchhh-------hcCH-HHHHHHHHHHHHHHHHHheeeccchhhHHHHHHHHHH
Confidence 44444566666666666666543 222111 0111 222233344556667777766665543333 33333
Q ss_pred HHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 010194 381 MTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLY 460 (515)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 460 (515)
.+.+.+.+.... ..|..-....++-...... .++....+++....+.-|...|+..++.-+-..+- .-.
T Consensus 313 ~agllf~m~~t~-------~Iw~~Ya~yvlfr~~y~l~-itiA~~~iA~nL~~e~~gLvFGiNTFvAl~lQsil---T~i 381 (433)
T KOG3810|consen 313 QAGLLFIMAQTQ-------HIWVCYAGYVLFRVIYQLT-ITIATFQIARNLSSELFGLVFGINTFVALILQSIL---TLI 381 (433)
T ss_pred hhhhhhhhhccc-------ceehhhhhHHHHHhhHhhh-hhHHHHHHHHhhhhhhheeeeehHHHHHHHHHHhh---eEE
Confidence 333333322222 2222222233332333322 22332333444555777788888777655443333 323
Q ss_pred hhhccC-----------chHHHHHHHHHHHHHHHHHHh
Q 010194 461 LADTSG-----------VKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 461 l~~~~g-----------~~~~~~~~~~~~~~~~~~~~~ 487 (515)
+.|..| |..-|.+.+++.+++..+.+.
T Consensus 382 Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~~~ 419 (433)
T KOG3810|consen 382 VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIEYL 419 (433)
T ss_pred EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHHHH
Confidence 334222 344577788888877666543
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-06 Score=78.76 Aligned_cols=173 Identities=16% Similarity=0.041 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHH
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLM 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~ 376 (515)
......++..++.........|.+.+....+..+ +.........+..+..+..+++.+|+|+|+-++.
T Consensus 16 v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~------------a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~l 83 (422)
T COG0738 16 VLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFE------------ASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVL 83 (422)
T ss_pred HHHHHHHHHHHHHhhcchhhHHHHHHHhCccHHH------------HHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHH
Confidence 4444455555556666666777776665554433 2225556666777778889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHH
Q 010194 377 GFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAF 456 (515)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~ 456 (515)
++.++++++.++.-... ...+..........+.+.....+....++..+.|++..+.-+.+...++.+|++++|.
T Consensus 84 gL~l~avg~~lF~pAa~-----~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~ 158 (422)
T COG0738 84 GLLLYAVGAALFWPAAS-----SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPL 158 (422)
T ss_pred HHHHHHHHHHHHhhhhh-----hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHH
Confidence 99999999988754331 1122222222222222222234556677788888888888899999999999999999
Q ss_pred HHHHhhhc-------------------cCchHHHHHHHHHHHHHHHHHH
Q 010194 457 GFLYLADT-------------------SGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 457 ~~~~l~~~-------------------~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+.+.+... ..++..+...+..+++..+...
T Consensus 159 ~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~ 207 (422)
T COG0738 159 LGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLIL 207 (422)
T ss_pred HHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 99998872 1244556666655555554444
|
|
| >KOG0252 consensus Inorganic phosphate transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.2e-07 Score=84.51 Aligned_cols=114 Identities=17% Similarity=0.076 Sum_probs=84.0
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccc
Q 010194 344 RAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTT 423 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (515)
........++.+.|.++.|++.||+|||+++...++++.++.++.+.... -..+.....++.++=...+++..+-+|+.
T Consensus 87 ~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~-~~~~~~~m~~L~~~R~~LGiGIGGDYPlS 165 (538)
T KOG0252|consen 87 ALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVG-TTSPLGVMMTLCFFRFLLGIGIGGDYPLS 165 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCC-CCCCcchhhHHHHHHHHhhccccCCCcch
Confidence 33667778899999999999999999999999999999998886555442 11111333444444455556666678999
Q ss_pred cccccccCchhhhhhhhHHHHHHhhhhHHHHHHHH
Q 010194 424 FVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGF 458 (515)
Q Consensus 424 ~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 458 (515)
-++.+|....+.||+-.+.+.+.+..|...|..+.
T Consensus 166 AtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt 200 (538)
T KOG0252|consen 166 ATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVA 200 (538)
T ss_pred HHHhhhhhhhccccceeEEEEEecchhHhhccHHH
Confidence 99999999999999998888777766655444443
|
|
| >KOG0254 consensus Predicted transporter (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=87.50 Aligned_cols=138 Identities=20% Similarity=0.158 Sum_probs=104.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++..++.++.|+++|++|||+.+..+.+...++.++..... .+..+.+.=++.+++..+...+...
T Consensus 94 ~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~--------~~~~l~~GR~l~G~g~G~~~~~~pi 165 (513)
T KOG0254|consen 94 LTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAP--------SWYQLIVGRILTGLGVGGASVLAPV 165 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHhccchhhhhhcchh
Confidence 66667778889999999999999999999999999999998888765 2333333333343443444456678
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc--CchHHHHHHHHHHHHHHHHHHhccccC
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTS--GVKKALLILGGANFLGMLFTFLVPESK 492 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (515)
+.+|..|++.||...+.......+|..++ ++.+....+. +|+..+.+..+.+++..+..+++||+.
T Consensus 166 y~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp 233 (513)
T KOG0254|consen 166 YISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESP 233 (513)
T ss_pred hHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 89999999999999999999888777777 6666665543 899888777777777777755777653
|
|
| >KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-06 Score=82.10 Aligned_cols=140 Identities=14% Similarity=0.095 Sum_probs=103.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++.+++.+.++.+.||++-.+.+....++..+..++-.... +....++.-++.+.+..+..|....
T Consensus 86 ~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~--------s~~~~ialr~llGl~es~~wP~~~~ 157 (495)
T KOG2533|consen 86 LDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVH--------SFPGLIALRFLLGLFESGGWPGVVA 157 (495)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHh--------hhHHHHHHHHHHHHHhcccchHHHH
Confidence 45566677788888999999999955554444333333332222221 3444555556666777777888889
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh------hccCchHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA------DTSGVKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~------~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
++...+.+++|+.-+|+.+....+|+++|+++...+. ...||++.|++-+++.++..++.+ ++|+...
T Consensus 158 ~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~ 232 (495)
T KOG2533|consen 158 ILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPS 232 (495)
T ss_pred HHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChh
Confidence 9999999999999999999999999999999988863 357899999999999888887777 6665443
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-05 Score=73.24 Aligned_cols=154 Identities=18% Similarity=0.155 Sum_probs=125.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGD-KMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d-r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
+.+..|...+++....|..++-...|++.. |.++|+.-.+++....++..+..++....+ .+.+...-++.|++.|
T Consensus 240 gmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~~~---~~~~~~~~~l~G~g~G 316 (403)
T PF03209_consen 240 GMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPLGS---PWLFRPGVFLLGLGNG 316 (403)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhccc---chHHHHHHHHHHHhhh
Confidence 999999999999999999999999999888 678888888888887777666544322111 5889999999999999
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
.......+.+.|..++++.|..+|.+...+.+...+|..+++.+.+.......+ ....+|-.+|.+.
T Consensus 317 ~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~-------------~~~~aY~~VF~lE 383 (403)
T PF03209_consen 317 LFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGN-------------SPALAYGVVFALE 383 (403)
T ss_pred HHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CcchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998765532110 1345688888887
Q ss_pred HHHHHHHHHHH
Q 010194 223 AIPALLTYYWR 233 (515)
Q Consensus 223 ~~~~~~~~~~~ 233 (515)
++..++.+.+.
T Consensus 384 a~ll~~a~~ll 394 (403)
T PF03209_consen 384 AVLLLAALVLL 394 (403)
T ss_pred HHHHHHHHHHH
Confidence 77666655443
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.3e-06 Score=77.14 Aligned_cols=148 Identities=12% Similarity=0.019 Sum_probs=84.0
Q ss_pred HHHHhHHHHHHhhhHHHHHHhhhhhh--hhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hhhhhh
Q 010194 27 IAGMGFFTDAYDLFCISLVTKLLGRI--YYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGD-----KMGRKR 99 (515)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~d-----r~Grr~ 99 (515)
++.+.+++++.-.+.....+|.+.++ - +.|.+|.+.+.-+ ...+. .-++|.++.| |+||||
T Consensus 4 lL~~LY~lQGiP~GL~~gsiPflL~~~~~----------~~sy~q~~~fSla-~~PfS-lKlLWaPiVDs~y~~~~GRRK 71 (544)
T PF13000_consen 4 LLVLLYFLQGIPLGLAFGSIPFLLQSMAK----------KVSYSQQAIFSLA-SYPFS-LKLLWAPIVDSVYSKRIGRRK 71 (544)
T ss_pred HHHHHHHHcCcccccccccchhhhccccC----------CCChhHheeeeee-echhH-HHHhhhhhhhhhcccccCCcc
Confidence 44556777777766655677888777 4 6788887754322 11111 3455666666 899998
Q ss_pred HHHH-HHHHHHHHHHHhhhcCC----------------CCchhH--HHHHHHHHHHhhhccccccchhhHhhhhcccccc
Q 010194 100 VYGM-TLMMMVICSLASGLSFG----------------KEPKAV--MITLCFFRFWLGFGIGGDYPLSATIMSEYANKKT 160 (515)
Q Consensus 100 ~l~~-~~~~~~i~~~~~~~~~~----------------~~~~~~--~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~ 160 (515)
..++ .-.+.++..+..+...+ ...... ...+...-++.=+-++.-..++..+.-.+..+++
T Consensus 72 SWiiP~Q~l~g~~m~~l~~~i~~~~~~~~~~d~~~~~~~~~~~~~~i~~Lt~~F~~L~fl~ATQDIAVDGWALT~Ls~~n 151 (544)
T PF13000_consen 72 SWIIPIQYLSGILMLYLSYNISQWLLFDGVDDALLGQGESTVNNITIKFLTWFFFILVFLCATQDIAVDGWALTMLSPEN 151 (544)
T ss_pred hhhhHHHHHHHHHHHHHHhccchhhcccccchhhhcCCCCcccccchhHHHHHHHHHHHHHccCCceeehhhhhhcChhh
Confidence 7433 33444444443332220 000000 1123333334444455666777777777788888
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 161 RGAFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 161 r~~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
++.+......+.++|..++..+--.+
T Consensus 152 ~~~ASTcqtvG~~~Gyfls~tvFlal 177 (544)
T PF13000_consen 152 VGYASTCQTVGQTAGYFLSFTVFLAL 177 (544)
T ss_pred cchHHHHHHhHhhhhHHHHHHHHHhh
Confidence 88888777777777766666554444
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0007 Score=65.72 Aligned_cols=97 Identities=11% Similarity=-0.005 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCC
Q 010194 126 VMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAA 205 (515)
Q Consensus 126 ~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~ 205 (515)
.++..++.-++.|++.+.......++.+. +|++ .+..+..+.+++.+++.++--.......+. +
T Consensus 105 ~f~~~~~~v~~~g~~~~~~q~s~~gla~~-fp~~----~~~a~~~G~g~aGv~~s~~~ii~~a~~~~~-----~------ 168 (437)
T TIGR00939 105 FFVTTMASVVIINSGMALLQGSLFGLAGV-FPST----YSSAVMSGQGLAGVLTSLAMILVKASGNDS-----H------ 168 (437)
T ss_pred HHHHHHHHHHHHHhhhhhhcccchhhccc-CCHH----HHHHHHhcchhHHHHHHHHHHHHHHhcCCc-----c------
Confidence 36778888889999999988888888874 6654 344455566666666665543332211100 0
Q ss_pred ccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhh
Q 010194 206 STVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242 (515)
Q Consensus 206 ~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 242 (515)
....+=...|.++++..++.++....++..|..
T Consensus 169 ----~~~~~a~~YF~~a~~v~l~~i~~~~~l~k~~~~ 201 (437)
T TIGR00939 169 ----GLKKSALGYFGTPCVVQLICIVCYLLLPKLPFA 201 (437)
T ss_pred ----chhhhhhhHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 012223334444555555666666667766643
|
|
| >KOG3762 consensus Predicted transporter [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.2e-06 Score=81.39 Aligned_cols=141 Identities=16% Similarity=0.040 Sum_probs=123.5
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+..+...|........|-.+.-++.+++.+|+|+-+++..++.+..+=.+..+...| .|..+..-+++|+..+.
T Consensus 402 ~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n------~W~vLPieilqgit~al 475 (618)
T KOG3762|consen 402 GGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQN------PWMVLPIEILQGITHAL 475 (618)
T ss_pred CCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcC------chheeeHHHHHHHHHHH
Confidence 566667787888888888999999999999999999999999999999999999999 89999999999999999
Q ss_pred ccchhhHhhhhccccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAVF-AMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~~-~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
.+..+.+|++...||+.|..+.++.+ ...++|--+|.++|+.+. ...+=|..|.+.
T Consensus 476 iWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v-----------------------~~fg~~ttf~~~ 532 (618)
T KOG3762|consen 476 IWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVV-----------------------ERFGARTTFRIF 532 (618)
T ss_pred HHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhh-----------------------eeehhHHHHHHH
Confidence 99999999999999999999999876 455799999999999985 445578888887
Q ss_pred HHHHHHHHHHH
Q 010194 223 AIPALLTYYWR 233 (515)
Q Consensus 223 ~~~~~~~~~~~ 233 (515)
++.+++.++..
T Consensus 533 giAcl~~l~~~ 543 (618)
T KOG3762|consen 533 GIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHH
Confidence 77777655544
|
|
| >KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.6e-06 Score=80.56 Aligned_cols=145 Identities=9% Similarity=-0.011 Sum_probs=95.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhch-hhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGR-FAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (515)
......++..++.++.|+...|.++ |+.++.+.+++.++.++....... +++ ..++.+.+=+..+.+.+.....-
T Consensus 76 viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~---~~~-~~y~mL~~R~l~Gvg~~n~a~lR 151 (488)
T KOG2325|consen 76 VIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYV---PNG-VKYLMLVARILTGVGVGNFAVLR 151 (488)
T ss_pred HHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhc---ccc-hHHHHHHHHHHcCcCcccHHHHH
Confidence 4455778888899999999999885 777889999999998888443321 111 22233333222233333345566
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh-------------ccCchHHHHHHHHHHHHHHHHHH-hccc
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD-------------TSGVKKALLILGGANFLGMLFTF-LVPE 490 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~-------------~~g~~~~~~~~~~~~~~~~~~~~-~~~~ 490 (515)
+|+++..-.++|.++++..+...-+|.++||.+...+.. ..-|..+-++.+++.++..++.+ +++|
T Consensus 152 ~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E 231 (488)
T KOG2325|consen 152 AYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKE 231 (488)
T ss_pred HHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheee
Confidence 788887767888888888888777888888777654432 01145666777778887777766 5666
Q ss_pred cCCC
Q 010194 491 SKGK 494 (515)
Q Consensus 491 ~~~~ 494 (515)
.++.
T Consensus 232 ~~~~ 235 (488)
T KOG2325|consen 232 VYRG 235 (488)
T ss_pred cccC
Confidence 5443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.5e-06 Score=57.54 Aligned_cols=68 Identities=18% Similarity=0.259 Sum_probs=54.8
Q ss_pred hHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH
Q 010194 31 GFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMM 108 (515)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~ 108 (515)
.+++.....+.+-|..|...++. |++..++|.+.++..+...++.+++|.++||+|+++.++....++
T Consensus 8 ~yf~~f~~~g~~~Pfl~~~~~~~----------Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~~ 75 (77)
T PF12832_consen 8 FYFFYFAALGCLYPFLPLYLKQL----------GLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLFM 75 (77)
T ss_pred HHHHHHHHHHHHHhhhhHhhhhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 34445555555566666666777 999999999999999999999999999999999998877665543
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00043 Score=64.66 Aligned_cols=175 Identities=11% Similarity=0.057 Sum_probs=86.3
Q ss_pred HhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhh
Q 010194 37 YDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASG 116 (515)
Q Consensus 37 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~ 116 (515)
..+..+....++..+++.. .+.+..-....+....+...+....--++.-|.-+|-...... ...+....+.
T Consensus 32 lpWN~fiTa~~y~~~~~~~-------~~~~~~F~~~~~~~a~i~~ll~~~~n~~~~~~~~~~~~~~l~~-~~il~i~~l~ 103 (406)
T KOG1479|consen 32 LPWNMFITASDYYYYRFPG-------YHNSKNFTSSYTLAAQIPLLLFNLLNAFLNTRLRTRVGYLLSL-IAILFIVTLD 103 (406)
T ss_pred cchHhhhccHHHHHhhcCC-------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 4445555566666665511 1113333334444444445555555555555622222121111 1111122222
Q ss_pred hc---CCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 010194 117 LS---FGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKAN 193 (515)
Q Consensus 117 ~~---~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 193 (515)
++ .+......+...++.-.+.+++.|..........++ +|++.-...+ .+.+++..+..++.-.......
T Consensus 104 ~~~v~~~~~~~~ff~vt~~~vv~~~~a~a~~qgs~~G~a~~-~P~~ytqavm----~G~a~aG~l~Sl~~i~tka~~~-- 176 (406)
T KOG1479|consen 104 LALVKTDTWTNGFFLVTLIIVVLLNLANAVVQGSLYGLAGL-FPSEYTQAVM----SGQALAGTLTSLLRILTKAAFS-- 176 (406)
T ss_pred HHhhccCCccchhHHHHHHHHHHHhhhhhhhccchhhhhhc-CCHHHHHHHH----hcchhHhHHHHHHHHHHHHhcC--
Confidence 22 222233446778888888999999888888887777 4555433222 3444444444444333222222
Q ss_pred CCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhh
Q 010194 194 FPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARY 242 (515)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 242 (515)
....+=...|.+..+..++.++....+|..|-.
T Consensus 177 ----------------~~~~sA~~yF~~s~~~~llC~i~y~~l~~lpf~ 209 (406)
T KOG1479|consen 177 ----------------DSRTSALIYFITSTVILLLCFVLYLVLPKLPFV 209 (406)
T ss_pred ----------------CCCceeehhHHHHHHHHHHHHHHHHHhhcchHH
Confidence 122334455666666666666666667776643
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.5e-08 Score=94.98 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=101.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......++.++|.++.|+++||+|||+.+..+..+..++.++..+.... ..+....+.-++.+++..+..+....
T Consensus 51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~~R~~~G~~~g~~~~~~~~ 125 (451)
T PF00083_consen 51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSY-----NNFWMLLIGRFLIGFGIGGAYVVSPI 125 (451)
T ss_pred HHHHHHhhhcccccccccccccccccccccccccccccccccccccccc-----cccccccccccccccccccccccccc
Confidence 5666778889999999999999999999999988888888777654411 12223333334444444445677888
Q ss_pred cccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc---cCchHHHHHHHHHHHHHHHHHHhcccc
Q 010194 426 VPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT---SGVKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 426 ~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
++.|..|++.|+...++.+....+|..++..+.-.+.+. .+|+..+.+..+..++..+...++||.
T Consensus 126 ~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 126 YISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999988888887777665444332 348877777766666655555567765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0033 Score=63.04 Aligned_cols=160 Identities=15% Similarity=0.114 Sum_probs=117.9
Q ss_pred HHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHhhhcC
Q 010194 41 CISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVYGMTLMMMVICSLASGLSF 119 (515)
Q Consensus 41 ~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~ 119 (515)
....++..+..++ +.+...+.-..+.+.-......+.+++++|- +||-+++.++.++..++..+..++.
T Consensus 56 ~~~nlv~ylt~~~----------~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a 125 (571)
T KOG1237|consen 56 LVSNLVTYLTLEL----------HASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSA 125 (571)
T ss_pred chhHHHHHHHHHh----------ccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888 7877888888888888888899999999996 6888999998888887765443321
Q ss_pred CC-----------------C--chhHHHHHHHHHHHhhhccccccchhhHhhhhccc---ccc---chhHHHHHHHHHHH
Q 010194 120 GK-----------------E--PKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN---KKT---RGAFIAAVFAMQGF 174 (515)
Q Consensus 120 ~~-----------------~--~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~---~~~---r~~~~~~~~~~~~~ 174 (515)
.. . .......++.+.-+..+|.|+.-+...++-+|-++ +++ +...+..+....++
T Consensus 126 ~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~ 205 (571)
T KOG1237|consen 126 MIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNG 205 (571)
T ss_pred HhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHH
Confidence 10 0 01113467788888889999999999999999998 322 23567777778888
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHH
Q 010194 175 GILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWR 233 (515)
Q Consensus 175 G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~ 233 (515)
|..++..+.-+.- ++.+|.+.|.+..+..+++++++
T Consensus 206 g~l~a~t~~vyiq-----------------------~~~~w~lgf~i~~~~~~lai~iF 241 (571)
T KOG1237|consen 206 GALLAQTVLVYIQ-----------------------DNVGWKLGFGIPTVLNALAILIF 241 (571)
T ss_pred HHHHHHHHHHhhh-----------------------hcccceeeccHHHHHHHHHHHHH
Confidence 8887777766652 45679999998777666655544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=98.07 E-value=4.9e-05 Score=73.00 Aligned_cols=114 Identities=14% Similarity=0.132 Sum_probs=87.0
Q ss_pred hHHHHHHHHHHHHHHHhhhc--CCC-CchhHHHHHHHHHHHhhhccccccchhhHhhhhccccc---cchhHHHHHHHHH
Q 010194 99 RVYGMTLMMMVICSLASGLS--FGK-EPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKK---TRGAFIAAVFAMQ 172 (515)
Q Consensus 99 ~~l~~~~~~~~i~~~~~~~~--~~~-~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~---~r~~~~~~~~~~~ 172 (515)
|++.++.++..+|.++..++ +.. +.....+.++++-.+.++|.|+.-|...++.+|.++++ +|.+.+.++..+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 56788888999998884443 221 01111367899999999999999999999999999866 4667788899999
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHh
Q 010194 173 GFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMK 235 (515)
Q Consensus 173 ~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 235 (515)
++|..++..+.+++. ++.||.+.|.+.++..+++++.++.
T Consensus 82 n~G~~~~~~~~~~i~-----------------------~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQ-----------------------QNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHCCCHHH-----------------------HCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHhhcccchhhc-----------------------cccchhhhhhHHHHHHHHHHHHHHh
Confidence 999999999988885 5677999999988888777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0001 Score=75.00 Aligned_cols=133 Identities=14% Similarity=0.001 Sum_probs=89.2
Q ss_pred hhHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCch
Q 010194 355 VPGYWFTVALIDK-IGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPA 433 (515)
Q Consensus 355 ~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 433 (515)
-+..+++|++.|+ +|+++.+.++.++..++..++.+..................+.+...+..+.-|...+...|.+++
T Consensus 37 yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf~~ 116 (654)
T TIGR00926 37 YLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQFEE 116 (654)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhcCc
Confidence 3445578889996 799999999999988888877664311111111111122222333333344456666777777764
Q ss_pred h---hhhhhhHHHHHHhhhhHHHHHHHHHHhhhcc-------CchHHHHHHHHHHHHHHHHHHh
Q 010194 434 R---LRSTCHGISAASGKAGAIVGAFGFLYLADTS-------GVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 434 ~---~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~-------g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
+ .+-....+.....++|+.+++.+.+++.+.. +|..+|.+.+++.+++.++...
T Consensus 117 ~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 117 RQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3 4777888889999999999999999987443 5888888888888877776653
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00044 Score=63.44 Aligned_cols=163 Identities=15% Similarity=0.039 Sum_probs=90.8
Q ss_pred HHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH
Q 010194 310 YYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALA 389 (515)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~ 389 (515)
-+...-|.-.+.++.|+...+ ++. ..........+...+.|.+.||+|||+..+...++..++++.--
T Consensus 50 DWLQGpY~Y~LY~~yg~~~~q-----------Ia~-Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~ 117 (354)
T PF05631_consen 50 DWLQGPYLYALYESYGFSEHQ-----------IAI-LFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH 117 (354)
T ss_pred HHhhcchhHHHHHHcCCCHHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh
Confidence 333333333444556665544 222 44555556666667889999999999998888888887776542
Q ss_pred hhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc-cccc----cCchhhhhhhhHHHHHH-hhhhHHHHHHHHHHhhh
Q 010194 390 IPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV-VPAE----IFPARLRSTCHGISAAS-GKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~p~~~~~~~~g~~~~~-~~~g~~i~~~~~~~l~~ 463 (515)
. +....+.+-=++.+.......+..=+ ++.| -+|++..+...+..... +.+-.+++..+...+.+
T Consensus 118 ~---------~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~ 188 (354)
T PF05631_consen 118 S---------SNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLAD 188 (354)
T ss_pred c---------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHH
Confidence 2 12222322223333322222222111 2233 35666666666655533 33445555566666666
Q ss_pred ccC--chHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 464 TSG--VKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 464 ~~g--~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
..+ ...+|.....+.+++.++.. ..+|..+
T Consensus 189 ~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 189 WFGFGPVAPFDAAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HhCCCCcchHHHHHHHHHHHHHHHHhcccccCC
Confidence 544 47788877777777777665 4455443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.019 Score=56.41 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=96.0
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALC-GTLAGQLFFGWLGDK 94 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr 94 (515)
+-.+..+..+..+.+..|+..+..... -.+.+.+.- .....+.+..+=....+ ...+...+..++++|
T Consensus 17 pi~~~E~~k~~~l~~m~f~i~f~y~~l----R~~KD~lvv-------t~~gae~I~flK~~~vlP~a~~f~~~y~kl~n~ 85 (491)
T PF03219_consen 17 PIHRSELKKFLPLALMFFFILFNYTIL----RDLKDTLVV-------TAQGAEVIPFLKVWGVLPVAILFTILYSKLSNR 85 (491)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH----HHhcCeEEE-------ecCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334555566666666666666554333 222222200 01245556666554444 445668889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHhhhc--CC---CCchh--------------------HHHHHHHHHHHhhhccccccc-hh
Q 010194 95 MGRKRVYGMTLMMMVICSLASGLS--FG---KEPKA--------------------VMITLCFFRFWLGFGIGGDYP-LS 148 (515)
Q Consensus 95 ~Grr~~l~~~~~~~~i~~~~~~~~--~~---~~~~~--------------------~~~~l~~~r~l~G~~~g~~~~-~~ 148 (515)
++|++++-+....+.....++++. |+ .++.. ..|.+.+..+..-+-.....+ .-
T Consensus 86 ~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlSlLF 165 (491)
T PF03219_consen 86 LSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLSLLF 165 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999776666665555555442 11 11100 011122222222222222222 35
Q ss_pred hHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 149 ATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSA 188 (515)
Q Consensus 149 ~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 188 (515)
..+..|.++.+|-.|..+++..+.++|.++++.+...+.+
T Consensus 166 W~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 166 WGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999999999999999999998888888876
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG2816 consensus Predicted transporter ADD1 (major facilitator superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00022 Score=69.38 Aligned_cols=122 Identities=12% Similarity=0.097 Sum_probs=109.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFG-WLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G-~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
++++.+.+...+.......+++++.. .+...+|-|+++..|+..-.+..++.+++++ .|+++....+.++. .
T Consensus 273 ~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~~~------~w~~~~~~v~~~~~-~ 345 (463)
T KOG2816|consen 273 GWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFATE------TWMMFAAGVVVALA-G 345 (463)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHhcc------chhhhHHHHHHHhh-c
Confidence 89999999888888888888888887 7888899999999999999999999999999 68888888888885 5
Q ss_pred cccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKA 192 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~ 192 (515)
...+...+.++.+.+++++|++.++......+...++|.+-+.+...+..
T Consensus 346 ~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t~~ 395 (463)
T KOG2816|consen 346 IVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALTLD 395 (463)
T ss_pred chhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 66899999999999999999999999999999999999998888665553
|
|
| >KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0005 Score=64.58 Aligned_cols=121 Identities=15% Similarity=0.039 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchH-HHHHHHHHHHHHhhcCccc
Q 010194 343 ARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRI-GFVVLYSLTFFFSNFGPNT 421 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 421 (515)
+.+...++.+..++..+.+-|+.||+|-|....++....+++..+=.+......+ +..+ ........+..........
T Consensus 81 ~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~-~~f~~~l~~~Gq~iaa~Aq~Fim~ 159 (480)
T KOG2563|consen 81 ADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVP-PLFRRPLTHTGQSIAAAAQPFILG 159 (480)
T ss_pred HHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcccc-ccchhhhhHHhHHHHHHhhhHhhc
Confidence 4446677777788888899999999999999999998888887765554421111 1111 1111111111111111111
Q ss_pred cccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc
Q 010194 422 TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT 464 (515)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~ 464 (515)
...-+..--+|+++|+++..+..+.+.+|.+++.++.+.+..+
T Consensus 160 lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 160 LPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred cccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 2222334458999999999999999999999998888777653
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.093 Score=50.46 Aligned_cols=160 Identities=11% Similarity=0.055 Sum_probs=99.0
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHH-HHHHHHHHHhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALC-GTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l-~~~i~~~~~G~l~dr~G 96 (515)
+++-+..+.-+++..++..+..+. +-.+.+.+.- ...+++.+.++=+..-+ +..+..++.+++.+++.
T Consensus 22 ~r~E~~kflpl~Ll~f~I~~ny~~----lR~lKDslvv-------~~~gae~I~FlK~~~vlP~avif~~iy~kl~~~lt 90 (509)
T COG3202 22 RRYELKKFLPLALLFFCILFNYNL----LRSLKDSLVV-------TRQGAESISFLKTWGVLPSAVIFTIIYQKLLNILT 90 (509)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhheEe-------ecCcchhhHHHHHHHhchHHHHHHHHHHHHHhhcC
Confidence 444555555555555555555433 3334444310 02345667777777777 67889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhhcCC-----CCch-------------hH--------HHHHHHHHHHhhhccccccc-hhh
Q 010194 97 RKRVYGMTLMMMVICSLASGLSFG-----KEPK-------------AV--------MITLCFFRFWLGFGIGGDYP-LSA 149 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~~~~-----~~~~-------------~~--------~~~l~~~r~l~G~~~g~~~~-~~~ 149 (515)
|++++-..+..+....+++++.-. .++. +. .|..-+.....=+-...... .-.
T Consensus 91 ~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw 170 (509)
T COG3202 91 REKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLFYIMAELWGSLVLSLLFW 170 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988777777777777765421 0000 00 01222222222222122222 345
Q ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 150 TIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSA 188 (515)
Q Consensus 150 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 188 (515)
....|.+..+|-.|..++++.+.+++..++..+..++.+
T Consensus 171 ~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 171 QFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 667888988999999999999999998888888877764
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.013 Score=57.13 Aligned_cols=109 Identities=9% Similarity=0.011 Sum_probs=71.7
Q ss_pred hhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCC------------------------chHHHHHHHH
Q 010194 354 TVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPD------------------------HRIGFVVLYS 409 (515)
Q Consensus 354 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~ 409 (515)
.++..++.+++++|++|++............+.++.+......+.- ..|.......
T Consensus 57 ~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv 136 (472)
T TIGR00769 57 AVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYV 136 (472)
T ss_pred HHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHH
Confidence 3333567899999999999887766666665555555432111110 0111122222
Q ss_pred HHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh
Q 010194 410 LTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA 462 (515)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~ 462 (515)
..-........-+.|.+++|.+..++..+-.++....+++|..+++.+..++.
T Consensus 137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222222277899999999999999999999999999999999988876
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0013 Score=57.38 Aligned_cols=113 Identities=11% Similarity=0.056 Sum_probs=55.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHhhhhcc--cCCCchHHHHHHHHHHHHHhhcCccccc
Q 010194 347 TLIALCSTVPGYWFTVALIDK-IGRFAIQLMGFFFMTVFMFALAIPYHHW--TLPDHRIGFVVLYSLTFFFSNFGPNTTT 423 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (515)
......+..+|.+..|...+. +.||+. +...+.+.+.+.++....... ...........++.++.+.+..+..++.
T Consensus 147 ~I~fv~g~~~G~~~ig~~nkt~~kRk~f-i~~~~~~gi~~~~l~~~~~~~~g~~~~~~~~~f~I~~Fl~G~f~WgiQ~Vi 225 (267)
T PF07672_consen 147 QILFVAGYFLGPFTIGLWNKTNYKRKPF-IHFIISLGIVFFVLSIVVVYFVGPGNAAGFAFFYIFGFLAGFFLWGIQGVI 225 (267)
T ss_pred HHHHHHHHhhhceeeccchhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344444445555556666554 344443 333322222222222211111 1111123445556666667777777777
Q ss_pred cccccccC--chhhhhhhhHHHHHHhhhhHHHHHHHHHH
Q 010194 424 FVVPAEIF--PARLRSTCHGISAASGKAGAIVGAFGFLY 460 (515)
Q Consensus 424 ~~~~~~~~--p~~~~~~~~g~~~~~~~~g~~i~~~~~~~ 460 (515)
.....|.- .|+..|...|+.-.++++.-.+.-.+...
T Consensus 226 L~lPhEyK~~~pk~ig~~Fg~iWGfGY~~yTi~~Ii~S~ 264 (267)
T PF07672_consen 226 LNLPHEYKGYNPKKIGIQFGLIWGFGYIFYTIYDIILSV 264 (267)
T ss_pred hcChhhhcCCCcceehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666652 34566777777766666655554444433
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.019 Score=57.33 Aligned_cols=123 Identities=21% Similarity=0.216 Sum_probs=75.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHH-HHHHHH-HHHHHhhhcCCCCchhHHHHHHHHHHHhhhcc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGM-TLMMMV-ICSLASGLSFGKEPKAVMITLCFFRFWLGFGI 141 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~-~~~~~~-i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~ 141 (515)
|.+..+.+.+.+++.+|.++|+.+++++.++.-|+....- ...+.+ ++..+....... .......++..-++.++..
T Consensus 46 G~s~~~~~~ii~~fl~glalGs~l~~~~~~~~~~~~~~~e~~i~l~~~~~~~ll~~~~~~-~~~~~~~~~~~~~~~~~l~ 124 (521)
T PRK03612 46 GDSVTQFSTVIGLMLFAMGVGALLSKYLLRDAAAGFVAVELLLALLGGLSALILYAAFAF-QGLSRLLLYVLVLLIGLLI 124 (521)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 7788889999999999999999999998755444432211 111111 111111111110 0000122344556677777
Q ss_pred ccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 142 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSA 188 (515)
Q Consensus 142 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~ 188 (515)
|+..|....+..+... ++-++..|-.+....+|.++|.++.+++.-
T Consensus 125 G~~~Pl~~~~~~~~~~-~~~g~~~g~ly~~ntlGa~~G~l~~~~vLl 170 (521)
T PRK03612 125 GMEIPLLMRILQRIRD-QHLGHNVATVLAADYLGALVGGLAFPFLLL 170 (521)
T ss_pred HHHHHHHHHHHHhccc-cchhhhhhhhHhHHhHHHHHHHHHHHHHHH
Confidence 8877777776655332 234567788888899999999999887753
|
|
| >KOG3098 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.045 Score=52.91 Aligned_cols=112 Identities=19% Similarity=0.149 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHhhhhh---hhhhhhHHHHHHHHHHHHHHHhhhcCCCCc------------hhHHHHHHHHHHHhh
Q 010194 74 NGVALCGTLAGQLFFGWLGD---KMGRKRVYGMTLMMMVICSLASGLSFGKEP------------KAVMITLCFFRFWLG 138 (515)
Q Consensus 74 ~s~~~l~~~i~~~~~G~l~d---r~Grr~~l~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~l~~~r~l~G 138 (515)
.-...+|..++..+.+.+.+ |+||++.+.++..+..++.++.-....+.. ...+...++.-++.|
T Consensus 285 ~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~~~~ii~~l~G 364 (461)
T KOG3098|consen 285 SIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYYLALIIGFLLG 364 (461)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchhHHHHHHHHHh
Confidence 33344455556666667765 488999999999888888887766432211 112567888899999
Q ss_pred hccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 139 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 139 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
++.+......+.++.+.+ +++|..+.++.-.-..++..++.......
T Consensus 365 ~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~~ 411 (461)
T KOG3098|consen 365 FGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPYL 411 (461)
T ss_pred hHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999 56688899988888888777666555444
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0027 Score=62.11 Aligned_cols=164 Identities=12% Similarity=0.075 Sum_probs=115.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcC---C--CCchhHHHHHHHHHHH
Q 010194 62 PGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSF---G--KEPKAVMITLCFFRFW 136 (515)
Q Consensus 62 ~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~---~--~~~~~~~~~l~~~r~l 136 (515)
..|.++...|.+..+..++..++..+..+..-+..-|+++..+.++.++.++.-.... | .+-+. .+-.+.--++
T Consensus 249 gp~fs~~f~~~~~~vg~~~~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d-~~f~lgd~~l 327 (433)
T PF03092_consen 249 GPHFSPSFYGTLSIVGSIASLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPD-QWFALGDTIL 327 (433)
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCC-eEEEEEhHHH
Confidence 3468999999999999999999999999988888889999888888777666433221 1 00000 1222333445
Q ss_pred hhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHH
Q 010194 137 LGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWR 216 (515)
Q Consensus 137 ~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr 216 (515)
..+..+..+-....+++|.+|+..-|...++.....++|..++..++..+.+.++... .+..+-.
T Consensus 328 ~~~~~~i~~mP~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~---------------~~f~~l~ 392 (433)
T PF03092_consen 328 EEVIGMIAFMPSLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTR---------------DDFSNLW 392 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc---------------ccccchH
Confidence 5555566677778889999999999999999999999999999999999998877311 1112233
Q ss_pred HHHHHhHHHHHHHHHHHHhcCCchh
Q 010194 217 IILMFGAIPALLTYYWRMKMPETAR 241 (515)
Q Consensus 217 ~~f~~~~~~~~~~~~~~~~~~e~p~ 241 (515)
+..+++.+..++.+.+..++|+..+
T Consensus 393 ~lili~~~~~ll~l~ll~lLp~~~~ 417 (433)
T PF03092_consen 393 LLILICSVIQLLPLPLLFLLPPQKR 417 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCch
Confidence 4444555555666666667777543
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.029 Score=45.64 Aligned_cols=104 Identities=13% Similarity=0.059 Sum_probs=70.4
Q ss_pred HHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccc
Q 010194 350 ALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAE 429 (515)
Q Consensus 350 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (515)
......+..++.+.+.+++|.|+.++++.+...+-....... ....++...++.+++....+...-.++.+
T Consensus 46 ~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~~---------~~~~l~~~s~l~G~~~a~lW~aqg~ylt~ 116 (156)
T PF05978_consen 46 LYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFYP---------NSYTLYPASALLGFGAALLWTAQGTYLTS 116 (156)
T ss_pred HHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh---------hHHHHHHHHHHHhhhhHHhhHhhhHHHHH
Confidence 333445566678889999999999999877776554443321 23344444444444444445555577788
Q ss_pred cCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh
Q 010194 430 IFPARLRSTCHGISAASGKAGAIVGAFGFLYLA 462 (515)
Q Consensus 430 ~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~ 462 (515)
...++.+++..++...+.+.+.++|..+.-.+.
T Consensus 117 ~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~~ 149 (156)
T PF05978_consen 117 YSTEETIGRNTGIFWAIFQSSLIFGNLFLFFIF 149 (156)
T ss_pred cCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999998888888876655443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0027 Score=44.64 Aligned_cols=60 Identities=18% Similarity=0.113 Sum_probs=44.9
Q ss_pred HHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHH
Q 010194 308 VAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFF 379 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 379 (515)
.......-|.+.++++.|+++.+.+. ...+..+..+++.++.|+++||.++++.......
T Consensus 14 ~~~g~~~Pfl~~~~~~~Gl~~~~iGi------------l~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 14 AALGCLYPFLPLYLKQLGLSPSQIGI------------LSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHhhhhHhhhhcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 34455566778888888887776443 5666677788899999999999999888766543
|
|
| >KOG3626 consensus Organic anion transporter [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0073 Score=61.17 Aligned_cols=149 Identities=14% Similarity=0.031 Sum_probs=103.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccC--------------C--------------
Q 010194 347 TLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL--------------P-------------- 398 (515)
Q Consensus 347 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~-------------- 398 (515)
...+-++..+...+..+...|..|-+.+-++.++++++.++..+....... +
T Consensus 138 ~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 217 (735)
T KOG3626|consen 138 ASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTN 217 (735)
T ss_pred eeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhhhhhhccccCCccccchhhccCCcc
Confidence 333444555555567778888888888899999999999988876421100 0
Q ss_pred -------------Cc---hHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh
Q 010194 399 -------------DH---RIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA 462 (515)
Q Consensus 399 -------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~ 462 (515)
.. .+..+++..++.+.+..-.+++..+|+-|...++......|+...+..+|-++|-.+.+.+.
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l 297 (735)
T KOG3626|consen 218 LCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCL 297 (735)
T ss_pred ccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 01 12233333344455555567778889999999898999999999998888888877777665
Q ss_pred h----c--------------c-CchHHHHHHHHHHHHHHHHHHhccccCCCC
Q 010194 463 D----T--------------S-GVKKALLILGGANFLGMLFTFLVPESKGKS 495 (515)
Q Consensus 463 ~----~--------------~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (515)
. . . -|+..|++.+.+.++..+..+++|+..++.
T Consensus 298 ~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~f~fPk~lp~~ 349 (735)
T KOG3626|consen 298 KLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPLFFFPKELPKS 349 (735)
T ss_pred HeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHhCcccCccc
Confidence 3 1 1 166778888888888888888887766544
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00021 Score=66.41 Aligned_cols=113 Identities=10% Similarity=-0.045 Sum_probs=2.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhccc-----CCCchHHHHHHHHHHHHHhhcCcc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWT-----LPDHRIGFVVLYSLTFFFSNFGPN 420 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 420 (515)
......++..+|+.+.++..-+..+++.+.+..+.-.+..-++........ ..-.+.++.++..+..++.+.-..
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGyl~ 266 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLWILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGYLS 266 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHHHHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccchhh
Confidence 566778888989887776432211233333222222222111111111100 000112222333344444444455
Q ss_pred ccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHH
Q 010194 421 TTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGF 458 (515)
Q Consensus 421 ~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~ 458 (515)
+..+.+..+..++++|..+-.+....-.+|-.+|..+.
T Consensus 267 tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 267 TLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp HHHH----------------------------------
T ss_pred hceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777888888888888887777777777776666543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.14 Score=49.58 Aligned_cols=139 Identities=9% Similarity=0.024 Sum_probs=78.7
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHH----HHHHHHhhhhcccCCC-chHHHHHHH---HHHHHHhhc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTV----FMFALAIPYHHWTLPD-HRIGFVVLY---SLTFFFSNF 417 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~ 417 (515)
..+.-.+..++.....|...||..|.+......+..-+ ++.++........... +.+.....+ .+.......
T Consensus 43 ygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~L 122 (432)
T PF06963_consen 43 YGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERL 122 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 44445555666667888999999998876655443322 2222222111111110 111111111 111111111
Q ss_pred Ccccccccccc------ccC--chhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 418 GPNTTTFVVPA------EIF--PARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 418 ~~~~~~~~~~~------~~~--p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+ .....+.. .+. +++.....++.+.-+-.+...++|++.|.+.+..++..+..+.++..+++.+.=+
T Consensus 123 a--s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy 197 (432)
T PF06963_consen 123 A--SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEY 197 (432)
T ss_pred H--HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHH
Confidence 1 11111111 122 4566777788888888889999999999999988988888888888888876544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.00028 Score=70.46 Aligned_cols=146 Identities=15% Similarity=0.024 Sum_probs=1.3
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC---------------------------
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP--------------------------- 398 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 398 (515)
+...+-++.++..++..++.+|.+|-+.+-.+.++++++.+++.+++......
T Consensus 43 i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~ 122 (539)
T PF03137_consen 43 ISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQA 122 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCccccccccccccccccccccccccccc
Confidence 56666677777777888888888888888899999999999988765421100
Q ss_pred ------------Cc---hHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh
Q 010194 399 ------------DH---RIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 399 ------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~ 463 (515)
.. ...+.++.-++.+.+....+++..+|+-|..+++..+...|+......+|-++|-.+.+....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~ 202 (539)
T PF03137_consen 123 SSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCLR 202 (539)
T ss_dssp -----------------------------SSS------------------------------------------------
T ss_pred cCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHHh
Confidence 00 112222233334444444567788999999999999999999999988888888777765543
Q ss_pred c---------------------cC-chHHHHHHHHHHHHHHHHHHhcccc
Q 010194 464 T---------------------SG-VKKALLILGGANFLGMLFTFLVPES 491 (515)
Q Consensus 464 ~---------------------~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (515)
. .| |+..|++.+++.++..+..++.|+.
T Consensus 203 ~yvD~~~~~~~~~~i~p~dp~WvGAWWLGfli~g~~~~l~aipl~~FPk~ 252 (539)
T PF03137_consen 203 IYVDFPKVPPDGVGITPSDPRWVGAWWLGFLICGILLFLSAIPLFFFPKK 252 (539)
T ss_dssp --------------------------------------------------
T ss_pred ceeCCccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 0 12 5666777777777776666655543
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.089 Score=50.06 Aligned_cols=126 Identities=10% Similarity=0.055 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhh
Q 010194 358 YWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRS 437 (515)
Q Consensus 358 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 437 (515)
.+....+.|..+.|++++.+.+...+...++.+.. ....+-+.-++.+....+ -...++++=...|+++--
T Consensus 58 l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~--------sv~~mq~~q~~yg~~~a~-evay~sYiys~v~~~~yq 128 (412)
T PF01770_consen 58 LLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGT--------SVLAMQLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQ 128 (412)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC--------cHHHHHHHHHHHHHHHHH-HHHHHHHheeecCHHHHH
Confidence 34667899999999999988888777777665543 233333333333333222 223445555556777777
Q ss_pred hhhHHHHHHhhhhHHHHHHHHHHhhh--ccCchHHHHHHHHHHHHHHHHHHhccccC
Q 010194 438 TCHGISAASGKAGAIVGAFGFLYLAD--TSGVKKALLILGGANFLGMLFTFLVPESK 492 (515)
Q Consensus 438 ~~~g~~~~~~~~g~~i~~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (515)
++.+........|..++..++-.+.. ...+....++......++.+..+++|..+
T Consensus 129 ~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 129 KVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 88888888888888888887777765 33455555555555566666666776543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.043 Score=52.11 Aligned_cols=113 Identities=15% Similarity=0.218 Sum_probs=82.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHH-----HHHHHHhhhcCCCCchhHHHHHHHHHHHhhh
Q 010194 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMM-----VICSLASGLSFGKEPKAVMITLCFFRFWLGF 139 (515)
Q Consensus 65 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~-----~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~ 139 (515)
....+..+....|.+|-.++.--...+ |+ |++.+.+.+-. .+.....-+.++ .|.+++.-+..|+
T Consensus 278 ~~r~~Y~~Y~~~YQ~GVFISRSS~~~~--ri--r~lwils~LQ~~nl~~~~l~s~~~fips------i~ivf~lif~eGL 347 (402)
T PF02487_consen 278 SPRDQYRWYQLLYQLGVFISRSSLPFF--RI--RRLWILSLLQVINLVFLLLQSWYRFIPS------IWIVFVLIFYEGL 347 (402)
T ss_pred CHHHHHHHHHHHHHHHHhhhhcceeee--eh--hhHHHHHHHHHHHHHHHHHHHHHHHhhH------HHHHHHHHHHHHH
Confidence 345677788888888877764433222 33 33333222222 222223334555 7888899999999
Q ss_pred ccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 140 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 140 ~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
..|..+..+...+.|-.|+++|..+++....+-++|..++.+++-++-
T Consensus 348 lGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~le 395 (402)
T PF02487_consen 348 LGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPLE 395 (402)
T ss_pred hhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988774
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.015 Score=55.78 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhcccC-CCchHHHHHHHHHHHHHhhcCccccccccccccCchh---hhhhhhHHHHHHh
Q 010194 372 AIQLMGFFFMTVFMFALAIPYHHWTL-PDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPAR---LRSTCHGISAASG 447 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~g~~~~~~ 447 (515)
|.+.++.++..++.+++.+....... .........+...+...+..+.-|...++..|.++++ .|.+.........
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~~i 81 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYWGI 81 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHHHH
Confidence 46677888888888886665432211 1111223333333344555556677778888888754 5677788889999
Q ss_pred hhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc
Q 010194 448 KAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 448 ~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
++|..++..+.+++.++.||...|.+.++..+++.+..+.-
T Consensus 82 n~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~~ 122 (372)
T PF00854_consen 82 NIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLSG 122 (372)
T ss_dssp HHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999988888887766644
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.17 Score=49.93 Aligned_cols=111 Identities=12% Similarity=0.076 Sum_probs=69.6
Q ss_pred hhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcc---cCCCc---------------------hHHHHHHH
Q 010194 353 STVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHW---TLPDH---------------------RIGFVVLY 408 (515)
Q Consensus 353 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---------------------~~~~~~~~ 408 (515)
+.++...+-.++++++++.++..+..........++++..... ..++. .|...+..
T Consensus 71 ~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfY 150 (491)
T PF03219_consen 71 VAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFY 150 (491)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence 3344455778999999999987665555555555554432110 00100 11111112
Q ss_pred HHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh
Q 010194 409 SLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~ 463 (515)
...-..+.....-+.|.+++|.++.++..+.+++.....++|.+++..+..++.+
T Consensus 151 v~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 151 VMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111122222222568899999999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG3880 consensus Predicted small molecule transporter involved in cellular pH homeostasis (Batten disease protein in human) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.036 Score=49.58 Aligned_cols=138 Identities=11% Similarity=-0.026 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhh
Q 010194 70 ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSA 149 (515)
Q Consensus 70 ~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~ 149 (515)
.|.+.-+-.+...+..+....+.||+---.=+.+..++.+.+.++.+++++ .++-+.+-.+..++.|.....-.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s------~~~sL~GV~~aSissGlGEiTFL 137 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNS------VPMSLLGVVFASISSGLGEITFL 137 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccc------hhHHHhhhhhhhhcCCcceeehh
Confidence 455666666777777788888888854332244556677788888999998 68878888888888887766555
Q ss_pred HhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH
Q 010194 150 TIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLT 229 (515)
Q Consensus 150 ~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~ 229 (515)
++-+. +|+. ..+-+..+.+...++|..--..+.+.. +..-|...++...+.++.
T Consensus 138 ~lss~-Y~~~----~i~~WSSGTGgAGliGa~SYa~lT~~~---------------------~~spk~Tlli~l~lP~lf 191 (409)
T KOG3880|consen 138 ALSSR-YPSI----VIAGWSSGTGGAGLIGASSYAFLTSWA---------------------NLSPKSTLLIMLFLPALF 191 (409)
T ss_pred hhhcc-CCCc----eeccccCCCCcchhhhhhHHHHHhhhc---------------------CCChhhHHHHHHHHHHHH
Confidence 55443 3322 333344444444455554444444322 234677777755444444
Q ss_pred HHHH-HhcCCc
Q 010194 230 YYWR-MKMPET 239 (515)
Q Consensus 230 ~~~~-~~~~e~ 239 (515)
.... +.++++
T Consensus 192 a~~yf~lL~~p 202 (409)
T KOG3880|consen 192 AFAYFFLLKSP 202 (409)
T ss_pred HHHHHheeCCC
Confidence 4444 444443
|
|
| >KOG3097 consensus Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.3 Score=40.44 Aligned_cols=102 Identities=16% Similarity=0.223 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccc
Q 010194 78 LCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYAN 157 (515)
Q Consensus 78 ~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~ 157 (515)
.+.....+++.+.+.+++|-|+++.++.......-.. =+-+. +..++-.-...|++.+..+..--+|+++.-.
T Consensus 68 y~~l~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~-Nl~pr------~~tlVPa~~~~G~aa~p~W~SkgtYlT~~g~ 140 (390)
T KOG3097|consen 68 YLSLIDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAA-NLEPR------YETLVPAGLVLGMAAGPIWASKGTYLTPMGQ 140 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-hcchh------HHhhccHHHhhccccccccccCcceecHHHH
Confidence 3444556666669999999999998887776543221 11222 7889999999999999999888888877654
Q ss_pred c--ccc---------hhHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 158 K--KTR---------GAFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 158 ~--~~r---------~~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
. +.| .+..+.+......+..+|..++..+
T Consensus 141 ~ya~~~~~q~~~~~~~~ffg~Ffii~~~~qv~gn~issli 180 (390)
T KOG3097|consen 141 NYANQRGEQAGDGMKVRFFGEFFIIFQCAQVWGNLISSLI 180 (390)
T ss_pred HHHHhhhhhccCceeeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 2 234 3444555444444444444444333
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=47.43 Aligned_cols=126 Identities=17% Similarity=0.203 Sum_probs=74.9
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccc
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFV 425 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (515)
......+....+.+..|.+.||.|||+.+..+.....++.+....... .............+.......+...+
T Consensus 44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~~~~~~~~~ 117 (338)
T COG0477 44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPN------VGLALLLILRLLQGLGGGGLLPVASA 117 (338)
T ss_pred HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344444555555578999999999997777666543333223322220 11222222222233333344567778
Q ss_pred cccccCch-hhhhhhhHHHHH-HhhhhHHHHHHHHHHhhhc--cCchHHHHHHHHH
Q 010194 426 VPAEIFPA-RLRSTCHGISAA-SGKAGAIVGAFGFLYLADT--SGVKKALLILGGA 477 (515)
Q Consensus 426 ~~~~~~p~-~~~~~~~g~~~~-~~~~g~~i~~~~~~~l~~~--~g~~~~~~~~~~~ 477 (515)
+..|..|+ +.|+...+.... ....+..+++.+.+.+.+. .+|+..+......
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (338)
T COG0477 118 LLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALL 173 (338)
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 88899887 678888888888 5777888888777666543 4566644444333
|
|
| >KOG0637 consensus Sucrose transporter and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.025 Score=53.64 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh----hchhh
Q 010194 297 IGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK----IGRFA 372 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~ 372 (515)
+......+...+.+.....+.+.+..+.|......+. .....-+.+++..++.|..+|| +||||
T Consensus 35 i~v~~ia~Gvqf~wA~elsy~tPyl~~lGvphk~~S~------------iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRR 102 (498)
T KOG0637|consen 35 ISVASIAAGVQFGWALELSYLTPYLQSLGVPHKWSSI------------IWLCGPLSGLLVQPLVGSASDRCTSRYGRRR 102 (498)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHcCCCcccccc------------cccccccccceeccccccccccccccccccc
Confidence 3334444444456666777888888888877665443 4444445566667788999997 67877
Q ss_pred HHHH-HHHHHHHHHHHHHhhhhc----ccCCC--chHHHHHHHHHHHH---HhhcCccccccccccccCchhhhhh-hhH
Q 010194 373 IQLM-GFFFMTVFMFALAIPYHH----WTLPD--HRIGFVVLYSLTFF---FSNFGPNTTTFVVPAEIFPARLRST-CHG 441 (515)
Q Consensus 373 ~~~~-~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~-~~g 441 (515)
..+. +.....+++++++..... ..... .....+.+..+... +.+-......-++..|+..++.+.+ +++
T Consensus 103 PfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~Dl~~~d~~~~~Ans 182 (498)
T KOG0637|consen 103 PFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLADLARGDAKKTRANS 182 (498)
T ss_pred chHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHHhccChhhhhccch
Confidence 6654 444555555555543321 11111 11122222222222 2222223345578888887777777 999
Q ss_pred HHHHHhhhhHHHHHHHHHH
Q 010194 442 ISAASGKAGAIVGAFGFLY 460 (515)
Q Consensus 442 ~~~~~~~~g~~i~~~~~~~ 460 (515)
....+..+|+.+|-.+.++
T Consensus 183 ~f~~f~avGnvLGY~~g~y 201 (498)
T KOG0637|consen 183 VFSFFMAVGNVLGYALGSY 201 (498)
T ss_pred hHHHHHHhcceeeeecccc
Confidence 9998888888887665553
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.38 E-value=1 Score=43.65 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=71.9
Q ss_pred hhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccC---------------CC----------chHHHHHH
Q 010194 353 STVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTL---------------PD----------HRIGFVVL 407 (515)
Q Consensus 353 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~----------~~~~~~~~ 407 (515)
++++..++-.++.+++.+.++..........++++++.......+ .+ +.|.....
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 455666788899999999988776666666666666554321100 00 01222222
Q ss_pred HHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh
Q 010194 408 YSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD 463 (515)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~ 463 (515)
....--.......-..|..+.|....++..+-+++.+...+++..++..+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22221122222223567788999999999999999999999999999988888765
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.21 Score=35.54 Aligned_cols=73 Identities=10% Similarity=0.011 Sum_probs=56.1
Q ss_pred HHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Q 010194 308 VAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFA 387 (515)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 387 (515)
+.-+..+...|...++.+++..+ +........++.++|.+...++.++.++++.+..+.+...+....
T Consensus 6 igRFayTplLP~M~~~~~ls~~~------------ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 73 (85)
T PF06779_consen 6 IGRFAYTPLLPLMQADGGLSLSQ------------AGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAA 73 (85)
T ss_pred hHHHHHHhHhHHHHHhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 34455666788888887776655 333777888888899989998888888888888888888888888
Q ss_pred HHhhh
Q 010194 388 LAIPY 392 (515)
Q Consensus 388 ~~~~~ 392 (515)
+.+..
T Consensus 74 ma~~~ 78 (85)
T PF06779_consen 74 MALTH 78 (85)
T ss_pred HHHHh
Confidence 77654
|
Note that many members are hypothetical proteins. |
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.3 Score=44.39 Aligned_cols=48 Identities=25% Similarity=0.358 Sum_probs=35.2
Q ss_pred hhhhhHHHHHHhhhhHHHHHHHHHHhhh-ccCchHHHHHHHHHHHHHHH
Q 010194 436 RSTCHGISAASGKAGAIVGAFGFLYLAD-TSGVKKALLILGGANFLGML 483 (515)
Q Consensus 436 ~~~~~g~~~~~~~~g~~i~~~~~~~l~~-~~g~~~~~~~~~~~~~~~~~ 483 (515)
.+...|-....+.+|+++|+++.+++.- ..|.....++.+.+.+++.+
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4667888899999999999999988765 57766665555555544443
|
|
| >KOG3574 consensus Acetyl-CoA transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.7 Score=40.68 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=20.9
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHH
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFL 459 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~ 459 (515)
.++..+..++..|-+........+.|.+++..++-
T Consensus 156 gwALtmLs~e~lgyaST~q~Vg~~~GyfL~~~ifL 190 (510)
T KOG3574|consen 156 GWALTMLSRENLGYASTCQSVGQTAGYFLGNVVFL 190 (510)
T ss_pred HHHHHhcCHhhcCchhHHHHHHHhhhHHhhcceee
Confidence 34445556677666666666666667666655543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=90.66 E-value=3 Score=40.87 Aligned_cols=118 Identities=9% Similarity=-0.032 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh--hHHHH--HHHHHHHHHHHhhhcCCCC---chhHHHHHHHHHHHhhhcc
Q 010194 69 VASAVNGVALCGTLAGQLFFGWLGDKMGRK--RVYGM--TLMMMVICSLASGLSFGKE---PKAVMITLCFFRFWLGFGI 141 (515)
Q Consensus 69 ~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr--~~l~~--~~~~~~i~~~~~~~~~~~~---~~~~~~~l~~~r~l~G~~~ 141 (515)
..-.....+.+|-.+|..+..+.. .-++| ++++. .=+++.-..++|..-+..+ .-.+-+..++.-++.|+..
T Consensus 308 ~~~i~~~~fNvgD~vGR~~~~~~~-~p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~~~p~~~~~d~~~~~~~~l~gltn 386 (437)
T TIGR00939 308 YPIICFLLFNLFDWLGRSLTSKFM-WPDEDSRWLPILSFLRVLFIPLFLLCNYPQRSRLPVFFPGDAYFIILMLLFGFSN 386 (437)
T ss_pred HHHHHHHHHHHHHHHHhhhhheeE-eeCCCccchHHHHHHHHHHHHHHHHhcCCccccCCeeecccHHHHHHHHHHHHhh
Confidence 345667777888888877654431 11222 33222 2223333333333221100 0011466777899999999
Q ss_pred ccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 142 GGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVS 187 (515)
Q Consensus 142 g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~ 187 (515)
|-....+..+..+..+++||..+..+...+..+|..+|..++..+.
T Consensus 387 Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~~~~~ 432 (437)
T TIGR00939 387 GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLSFLFV 432 (437)
T ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998876654
|
|
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.03 E-value=17 Score=34.26 Aligned_cols=54 Identities=4% Similarity=-0.026 Sum_probs=36.5
Q ss_pred ccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHH
Q 010194 429 EIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGM 482 (515)
Q Consensus 429 ~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~ 482 (515)
|--++......++....+-.....+.|.+.|.+....+.+..-..+++-.++..
T Consensus 166 ~g~s~s~lt~mnatir~iDq~tn~Lapv~tg~Iitfvsl~~~~g~f~~w~~vsm 219 (503)
T KOG2601|consen 166 EGESPSVLTNMNATIRGIDQSTNLLAPVITGLIITFVSLRASAGTFAAWALVSM 219 (503)
T ss_pred CCCCHHHHhhcchhhhhhhhhhhchhhhhhcccceeechhhhhhhhHHHHHHHH
Confidence 333444445555677777777889999999999987777765555555555543
|
|
| >KOG1237 consensus H+/oligopeptide symporter [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.59 E-value=19 Score=36.73 Aligned_cols=134 Identities=17% Similarity=0.183 Sum_probs=84.6
Q ss_pred hhhhHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHHHhhhhccc----------C----C-CchHHH-HHHHHHH-HHH
Q 010194 353 STVPGYWFTVALIDK-IGRFAIQLMGFFFMTVFMFALAIPYHHWT----------L----P-DHRIGF-VVLYSLT-FFF 414 (515)
Q Consensus 353 ~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~----~-~~~~~~-~~~~~~~-~~~ 414 (515)
......+.+++++|. +||-+++.++..+..++++++........ . . ...... ++...+. ...
T Consensus 85 ~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~ 164 (571)
T KOG1237|consen 85 TQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIAL 164 (571)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhee
Confidence 334455688999997 47888888888888888766655432110 0 0 011111 1111122 222
Q ss_pred hhcCccccccccccccCc----hhhhh--hhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 415 SNFGPNTTTFVVPAEIFP----ARLRS--TCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 415 ~~~~~~~~~~~~~~~~~p----~~~~~--~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
+..+.-|...+.-.|-++ .+.+. .-+.......+.|..++..+.-++.+..+|...|.+..+...++.++.+
T Consensus 165 G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 165 GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 334445666666677776 22233 5566777788889999999888888889999988888877777776655
|
|
| >KOG1479 consensus Nucleoside transporter [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.88 E-value=23 Score=34.02 Aligned_cols=75 Identities=8% Similarity=0.081 Sum_probs=31.7
Q ss_pred HHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh--ccCchHHHHHHHHHHHHHHHHHHhc
Q 010194 412 FFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD--TSGVKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~--~~g~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
...+........+..++ .+|+++....++-.+.++.+.+... ++.....+ ..+-..-|.+..++.++|.+++..+
T Consensus 127 ~~~a~a~~qgs~~G~a~-~~P~~ytqavm~G~a~aG~l~Sl~~-i~tka~~~~~~~sA~~yF~~s~~~~llC~i~y~~l 203 (406)
T KOG1479|consen 127 LNLANAVVQGSLYGLAG-LFPSEYTQAVMSGQALAGTLTSLLR-ILTKAAFSDSRTSALIYFITSTVILLLCFVLYLVL 203 (406)
T ss_pred Hhhhhhhhccchhhhhh-cCCHHHHHHHHhcchhHhHHHHHHH-HHHHHhcCCCCceeehhHHHHHHHHHHHHHHHHHh
Confidence 33333333344444444 4576765554444443333322222 22222222 2222233444455556666665533
|
|
| >KOG4332 consensus Predicted sugar transporter [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.4 Score=39.08 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=25.8
Q ss_pred HHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Q 010194 346 QTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMF 386 (515)
Q Consensus 346 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 386 (515)
.........++...+.|-+.||.|||+..+.-.+...++++
T Consensus 77 LfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCi 117 (454)
T KOG4332|consen 77 LFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCI 117 (454)
T ss_pred eeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHH
Confidence 33334444455555778899999999986655444444443
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.22 E-value=33 Score=32.08 Aligned_cols=119 Identities=15% Similarity=0.141 Sum_probs=71.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHH----HHHHHHH-HHHHHHhhhcCCCCchhHHHHHHHHHHHhh
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVY----GMTLMMM-VICSLASGLSFGKEPKAVMITLCFFRFWLG 138 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l----~~~~~~~-~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G 138 (515)
|-+.-|.+.+.+.|.....+|+...-++.|.--.-+.+ ++|++.- ++..+-..|+.+. ...-+.+++.-++.|
T Consensus 39 G~~Ilq~S~Iia~yl~amGlGs~~sry~~dd~~~~~Fv~vElllgligg~Sa~~ly~~FA~~~--~~~~~Vly~lt~vIG 116 (508)
T COG4262 39 GGGILQTSLIIAGYLAAMGLGSLLSRYVLDDAALARFVDVELLLGLIGGVSAAALYLLFALES--APSRLVLYALTAVIG 116 (508)
T ss_pred CCceeehHHHHHHHHHHhchhhhhhccccCchHHHHHHHHHHHHHHhccchHHHHHHHHHhcc--chHHHHHHHHHHHHH
Confidence 55566889999999999999999999988854333222 2222221 1122222344432 112578888999999
Q ss_pred hccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 010194 139 FGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIV 186 (515)
Q Consensus 139 ~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l 186 (515)
.-.|...|..+.++.... .+-....+.....-.+|...+.++-.++
T Consensus 117 ~LVG~EiPL~mrml~~r~--a~~k~~~s~vl~~DYLGal~~gLl~p~l 162 (508)
T COG4262 117 VLVGAEIPLLMRMLQRRQ--AKAKDLGSRVLTLDYLGALAGGLLWPFL 162 (508)
T ss_pred HHHhcchHHHHHHHHHHH--HHHHhhhhhhhhhHhhhhhhHHHHHHHH
Confidence 989999999998887722 1111222222233556666555554443
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=84.19 E-value=20 Score=35.39 Aligned_cols=38 Identities=13% Similarity=0.050 Sum_probs=22.8
Q ss_pred ccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh
Q 010194 425 VVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA 462 (515)
Q Consensus 425 ~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~ 462 (515)
.++..+..++.++-+........++|.+++-.++-.+-
T Consensus 141 GWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvFlaln 178 (544)
T PF13000_consen 141 GWALTMLSPENVGYASTCQTVGQTAGYFLSFTVFLALN 178 (544)
T ss_pred hhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHHHhhC
Confidence 34445556677776665555555667666666655443
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG2601 consensus Iron transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.93 E-value=6.4 Score=36.95 Aligned_cols=78 Identities=14% Similarity=0.099 Sum_probs=46.7
Q ss_pred HHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHH
Q 010194 25 IVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMT 104 (515)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~ 104 (515)
.+.+.+++++.-..--.+...+...+.++. +-|-.....-...-.....+..++.|...|+..|+|++...
T Consensus 29 ~i~Ly~gy~lt~wgdR~W~F~VsL~M~~L~---------gnsl~lvAvyglvesgs~lvlg~ivGq~vDg~sr~Kvi~~~ 99 (503)
T KOG2601|consen 29 VIFLYLGYFLTTWGDRMWEFSVSLFMILLG---------GNSLLLVAVYGLVESGSQLVLGPIVGQWVDGMSRVKVIQTW 99 (503)
T ss_pred eehhhHHHHHhHhhHhHHHHHHHHHHHHHc---------CceehhHHHHHHHHHhHHHhhHHHHHHHhcchhHHHHHHHH
Confidence 345556666655555566666666665552 21222222223333345567778889999999999998877
Q ss_pred HHHHHHH
Q 010194 105 LMMMVIC 111 (515)
Q Consensus 105 ~~~~~i~ 111 (515)
+.+--++
T Consensus 100 L~lqNlS 106 (503)
T KOG2601|consen 100 LLLQNLS 106 (503)
T ss_pred HhhccHH
Confidence 6654333
|
|
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=82.21 E-value=3.8 Score=32.90 Aligned_cols=34 Identities=6% Similarity=0.041 Sum_probs=26.1
Q ss_pred cccccccccccCchhhhhhhhHHHHHHhhhhHHH
Q 010194 420 NTTTFVVPAEIFPARLRSTCHGISAASGKAGAIV 453 (515)
Q Consensus 420 ~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i 453 (515)
..+.|.+.+-...++..|+..|+-.+-.|++...
T Consensus 112 lGisYGilSaSWD~~r~GSllG~~e~~~N~~r~~ 145 (153)
T PF11947_consen 112 LGISYGILSASWDPEREGSLLGWEEFKRNWGRMW 145 (153)
T ss_pred HhhhhhhcccccCCCCCCCcccHHHHHHhHHHHH
Confidence 3456677777888888999999998888876543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 515 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 2e-04 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 515 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 4e-15 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 3e-04 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 4e-15
Identities = 63/426 (14%), Positives = 130/426 (30%), Gaps = 61/426 (14%)
Query: 84 GQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143
+ G + D+ + L++ L G F + + + F G+ G
Sbjct: 78 SKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG--FVPWATSSIAVMFVLLFLCGWFQGM 135
Query: 144 DYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANP 203
+P M + ++K RG ++ G ++ ++ A F
Sbjct: 136 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFND----------- 184
Query: 204 AASTVPEADYIWRIILMF-GAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQ 262
W L L+ + M +T + L +
Sbjct: 185 -----------WHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIE------------E 221
Query: 263 VELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFT 322
+ + + E+ + + ++V + L L + + + Y
Sbjct: 222 YKNDYPDDYNEKAEQELTAKQIFMQYVLPNKL-LWYIAIANVFVYLLRY----------G 270
Query: 323 AIGWIP----KAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGF 378
+ W P + K K + A L G + DK+ R G
Sbjct: 271 ILDWSPTYLKEVKHFALD----KSSWAYFLYEYAGIP-GTLLCGWMSDKVFRGNRGATGV 325
Query: 379 FFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRST 438
FFMT+ A + +W P ++ + F +GP + E+ P + T
Sbjct: 326 FFMTLVTIATIV---YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGT 382
Query: 439 CHGISAASGK-AGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLVPESKGKSLE 497
G + G G++ + Y D G +++ G + L ++ +V + + E
Sbjct: 383 AAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHE 442
Query: 498 EMSGEA 503
++ E
Sbjct: 443 QLLQEL 448
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 25/108 (23%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 80 GTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGF 139
+ G L GW+ DK+ R G T + + + + + P +GF
Sbjct: 300 AGIPGTLLCGWMSDKVFRGN-RGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358
Query: 140 GIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG-FGILSGGMVAIIV 186
I G L E A KK G FG L G + A +
Sbjct: 359 LIYGPVMLIGLHALELAPKK----AAGTAAGFTGLFGYLGGSVAASAI 402
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 100.0 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 100.0 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.96 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.48 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.46 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.42 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.38 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.35 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.33 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.29 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-47 Score=379.69 Aligned_cols=454 Identities=21% Similarity=0.264 Sum_probs=331.8
Q ss_pred cchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 010194 17 TQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMG 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~G 96 (515)
.+++.+.+.++.+++.+.+++|..+++..+|.+.+++...+ +.+.+.+.++.|++.+++.+|..+|++++|+++||+|
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~G 83 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQ--NLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFG 83 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGTHHHHHHHHTGGG--CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTC
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566777777888999999999999999999988873221 1222456678899999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHhhh------------------cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccc
Q 010194 97 RKRVYGMTLMMMVICSLASGL------------------SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANK 158 (515)
Q Consensus 97 rr~~l~~~~~~~~i~~~~~~~------------------~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~ 158 (515)
||++++++.+++.++++++++ +++ ++.++++|+++|++.|+..+....+++|+.|+
T Consensus 84 Rk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~------~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~ 157 (491)
T 4gc0_A 84 RRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGY------VPEFVIYRIIGGIGVGLASMLSPMYIAELAPA 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGC------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH
Confidence 999999999999999999985 556 89999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCC
Q 010194 159 KTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPE 238 (515)
Q Consensus 159 ~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 238 (515)
++|++..++.+.+..+|.++++.++..+...... ......+||+.+.+..+..++.++..+++||
T Consensus 158 ~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pe 222 (491)
T 4gc0_A 158 HIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA---------------SWLNTDGWRYMFASECIPALLFLMLLYTVPE 222 (491)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT---------------TTTTTTHHHHHHHTTHHHHHHHHHHGGGSCC
T ss_pred HhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc---------------ccccchhhHHHhhhhhhhhhhhhhhhhcCCC
Confidence 9999999999999999999999998887643321 0124567999999999988888888899999
Q ss_pred chhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 010194 239 TARYTALVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQK 318 (515)
Q Consensus 239 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (515)
||+|+ ..+++.+++.+.+++..+.+..++.....++.....++........+..+.........+......+....+.+
T Consensus 223 Sp~~L-~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (491)
T 4gc0_A 223 SPRWL-MSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGRLLMFGVGVIVIGVMLSIFQQFVGINVVLYYAP 301 (491)
T ss_dssp CHHHH-HHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCCTHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred ChHHH-HHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhHHHHhcccHHHHHHHHHHHHHHhhhhHHHhcch
Confidence 99997 44455566666665554433322221111111000000001111111112333334444444445556666777
Q ss_pred HHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCC
Q 010194 319 DIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLP 398 (515)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (515)
.+.+..+..... .........+..+++.++++++.||+|||+.++.+...+.++++.+...... .
T Consensus 302 ~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---~ 366 (491)
T 4gc0_A 302 EVFKTLGASTDI------------ALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---Q 366 (491)
T ss_dssp HHHHHSSCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred HHHHhcCCCccc------------hhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---c
Confidence 776665543322 1124455566777888899999999999999999988888887777654421 1
Q ss_pred CchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhh------ccCchHHHH
Q 010194 399 DHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLAD------TSGVKKALL 472 (515)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~------~~g~~~~~~ 472 (515)
......+....+....+..+..++.+.+.+|++|++.|++++|+.+.++++++++++.+.+.+.+ ..+....|+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~ 446 (491)
T 4gc0_A 367 APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYW 446 (491)
T ss_dssp CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 22333344444445555666778888999999999999999999999999999999999887754 244566788
Q ss_pred HHHHHHHHHHHHHH-hccccCCCChhhhhhhhhcccCC
Q 010194 473 ILGGANFLGMLFTF-LVPESKGKSLEEMSGEAEEEKGT 509 (515)
Q Consensus 473 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 509 (515)
+++++++++.++.+ ++||||+|++||.++..++++++
T Consensus 447 i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~~ 484 (491)
T 4gc0_A 447 IYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETKK 484 (491)
T ss_dssp HHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC-----
T ss_pred HHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCcc
Confidence 88888888887766 89999999999998877655443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=316.04 Aligned_cols=402 Identities=13% Similarity=0.128 Sum_probs=293.8
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
++.+++.+..++++.+..+++...+++..|.+.+++ .+..+.|++.+++.++..++++++|+++||+||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~ 91 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-----------FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNP 91 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-----------TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCc
Confidence 345677788888889999999999999999888765 466789999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhhh----cCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLASGL----SFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQG 173 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~~~----~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~ 173 (515)
|++++++.++.+++.+++++ +++ ++.++++|+++|++.+...+...+++.|++|+++|++++++...+..
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ 165 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWATSS------IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHN 165 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHSS------SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhcccc------HHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHH
Confidence 99999999999999999999 888 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCch-HHHHHHHhHHHHHHH-HHHHHhcCCchhhHHHHhccHH
Q 010194 174 FGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYI-WRIILMFGAIPALLT-YYWRMKMPETARYTALVAKNAK 251 (515)
Q Consensus 174 ~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~-~~~~~~~~e~p~~~~~~~~~~~ 251 (515)
+|.++++.+++.+.+ ..+ ||+.|++.++..++. ++..+++||+|++. ..++.+
T Consensus 166 ~g~~~g~~~~~~l~~-----------------------~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 220 (451)
T 1pw4_A 166 VGGGIPPLLFLLGMA-----------------------WFNDWHAALYMPAFCAILVALFAFAMMRDTPQSC--GLPPIE 220 (451)
T ss_dssp HHHTSHHHHHHHHHH-----------------------HTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--CCCSCT
T ss_pred HHHHHHHHHHHHHHH-----------------------HhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhc--CCCChh
Confidence 999999999998753 244 999999987776654 44557789987652 111100
Q ss_pred HHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCc
Q 010194 252 QAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKA 330 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 330 (515)
+..+. .+++ .+.+++++.+.++.......++ +.++...+..++.....+....+.|.++++ .|+++..
T Consensus 221 ~~~~~--------~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 289 (451)
T 1pw4_A 221 EYKND--------YPDD-YNEKAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK 289 (451)
T ss_dssp TTCCC----------------------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH
T ss_pred hhccc--------cccc-chhhhhcccccccchHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 00000 0000 0000111112222211111111 234444555555556667777788888776 4554432
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh--chhhHHHHHHHHHH-HHHHHHHhhhhcccCCCchHHHHHH
Q 010194 331 KTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI--GRFAIQLMGFFFMT-VFMFALAIPYHHWTLPDHRIGFVVL 407 (515)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (515)
.........++.+++.++.+++.||+ +||+.+..+..+.. ++++++.... .........
T Consensus 290 ------------~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 351 (451)
T 1pw4_A 290 ------------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP------AGNPTVDMI 351 (451)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC------TTCHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhc------ccCHHHHHH
Confidence 22256666778889999999999999 99988877766655 4444332211 112222333
Q ss_pred HHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 408 YSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
..+..+.......+....+..|.+|++.|++++|+.+.+.++ |..++|.+.|.+.|..|+...|++.+++.+++.++.+
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 333333333344556678889999999999999999999999 9999999999999999999999999888888887776
Q ss_pred hccc
Q 010194 487 LVPE 490 (515)
Q Consensus 487 ~~~~ 490 (515)
+.++
T Consensus 432 ~~~~ 435 (451)
T 1pw4_A 432 VVMI 435 (451)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-37 Score=300.93 Aligned_cols=393 Identities=11% Similarity=-0.011 Sum_probs=279.4
Q ss_pred chhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 010194 18 QWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Gr 97 (515)
++++++.+..+++..+..+++....++..|.+.+++ +.+..+.|++.+.+.++..++++++|+++||+||
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~ 90 (438)
T 3o7q_A 21 SRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAF----------TLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSY 90 (438)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----------CCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCH
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcc
Confidence 344566667777888888999999999999999999 9999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHh---hhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH
Q 010194 98 KRVYGMTLMMMVICSLAS---GLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF 174 (515)
Q Consensus 98 r~~l~~~~~~~~i~~~~~---~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~ 174 (515)
|++++.+.++.+++.+++ +++++ ++.++++|+++|++.+...+...+++.|++|+++|++++++.+.+.++
T Consensus 91 r~~l~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 91 KAGIITGLFLYALGAALFWPAAEIMN------YTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccc------HHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 999999999999999999 88888 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhhhcCCCCCccCCCCCCcccc------CCCchHHHHHHHhHHHHHHHHHHHHh--cCCchhhHHH
Q 010194 175 GILSGGMVAIIVS-AAFKANFPAPIYSANPAASTVP------EADYIWRIILMFGAIPALLTYYWRMK--MPETARYTAL 245 (515)
Q Consensus 175 G~~~g~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~------~~~~~wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~ 245 (515)
|.++++.+++.+. ...+..........+ ... ....+||+.|++.++..++..+..++ .||+++. .
T Consensus 165 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--~ 238 (438)
T 3o7q_A 165 GAIIAVVFGQSLILSNVPHQSQDVLDKMS----PEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD--N 238 (438)
T ss_dssp HHHHHHHHTTHHHHTSSCCCCHHHHHHSC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT--C
T ss_pred HHHHHHHHHHHHHhcccccccccccccCC----cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc--c
Confidence 9999999999886 221100000000000 000 00112999998766655554443333 4554432 0
Q ss_pred HhccHHHHHHHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHH-HhHh
Q 010194 246 VAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDI-FTAI 324 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 324 (515)
++++++ ++.+.+.++.++++ .++...+..++.....+....+.|.+ +++.
T Consensus 239 ~~~~~~----------------------~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (438)
T 3o7q_A 239 HSDAKQ----------------------GSFSASLSRLARIR-------HWRWAVLAQFCYVGAQTACWSYLIRYAVEEI 289 (438)
T ss_dssp CCCSST----------------------TSHHHHHHHHTTCS-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccc----------------------cchhhhHHHHHhCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 000000 00000111122221 22333334444445566666777777 6664
Q ss_pred -cccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHH
Q 010194 325 -GWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIG 403 (515)
Q Consensus 325 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (515)
|+++.. +........++.+++.++.+++.||++||+.+..+..+..++++++.... ...
T Consensus 290 ~g~~~~~------------~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 349 (438)
T 3o7q_A 290 PGMTAGF------------AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAG--------GHV 349 (438)
T ss_dssp TTCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCC--------HHH
T ss_pred CCcchhH------------HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHcC--------CcH
Confidence 554433 22255666778888999999999999999999988888777766655432 122
Q ss_pred HHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccC-chHHHHHHHHHHHHHH
Q 010194 404 FVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSG-VKKALLILGGANFLGM 482 (515)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g-~~~~~~~~~~~~~~~~ 482 (515)
..... +..+++.....+..+++..|.+|++ ++.+.++.. ...++..++|.+.|.+.|..| ++..|.+.+++.++..
T Consensus 350 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~ 426 (438)
T 3o7q_A 350 GLIAL-TLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIF 426 (438)
T ss_dssp HHHHH-HHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 22222 3333444445677888888999866 888888877 778999999999999999988 8888887655555444
Q ss_pred HH
Q 010194 483 LF 484 (515)
Q Consensus 483 ~~ 484 (515)
++
T Consensus 427 ~~ 428 (438)
T 3o7q_A 427 IF 428 (438)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=271.36 Aligned_cols=380 Identities=11% Similarity=0.005 Sum_probs=245.0
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDK-MGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr-~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
|.+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++ ++.++++|+++|++.+
T Consensus 50 ~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~ 123 (491)
T 4aps_A 50 HITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG------ASALFGSIILIIIGTG 123 (491)
T ss_dssp CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS------TTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 89999999999999999999999988 7999999999999999
Q ss_pred cccchhhHhhhhcccccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHH
Q 010194 143 GDYPLSATIMSEYANKKT--RGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILM 220 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~--r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~ 220 (515)
...+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+. .|||+.|+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~-----------------------~g~~~~f~ 180 (491)
T 4aps_A 124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA-----------------------AGYHVAFS 180 (491)
T ss_dssp HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------SCHHHHHH
T ss_pred hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh-----------------------hhHHHHHH
Confidence 999999999999999988 77788889999999999999999998643 45999999
Q ss_pred HhHHHHHHHHHHHHhc-CCchhh---HHHHhccHHHHHHHHHH---------------HHHhh--hhHhhhh--------
Q 010194 221 FGAIPALLTYYWRMKM-PETARY---TALVAKNAKQAAADMSK---------------VLQVE--LEAEQEK-------- 271 (515)
Q Consensus 221 ~~~~~~~~~~~~~~~~-~e~p~~---~~~~~~~~~~~~~~~~~---------------~~~~~--~~~~~~~-------- 271 (515)
+.++..++..+..++. ++..+. ....+.++++..+..+. ....+ .+.....
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (491)
T 4aps_A 181 LAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAI 260 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHH
Confidence 9776666544443322 211100 00001111222111111 00000 0000000
Q ss_pred ---HHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHHHHHH
Q 010194 272 ---VEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIARAQT 347 (515)
Q Consensus 272 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 347 (515)
......+.. ...+..++.....+............+.....+.+.+.++ .+.+....+. ..
T Consensus 261 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~ 325 (491)
T 4aps_A 261 PVFYFAWMISSV---KVTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSW------------FQ 325 (491)
T ss_dssp HHHHHHHHC---------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGG------------GT
T ss_pred HHHHHHHHhhcc---cccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHH------------Hh
Confidence 000000000 0000011111112222222333333444455555666655 3333222222 34
Q ss_pred HHHHhhhhhHHHHHHHHHHhhchhhHHH-----HHHHHHHHHHHHHHhhhhccc-CCCchHHHHHHHHHHHHHhhcCccc
Q 010194 348 LIALCSTVPGYWFTVALIDKIGRFAIQL-----MGFFFMTVFMFALAIPYHHWT-LPDHRIGFVVLYSLTFFFSNFGPNT 421 (515)
Q Consensus 348 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (515)
....+..+++.++.+++.||++||+... .+..+.+++++++........ .............+..+.......+
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~ 405 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSGKVSPLWLVGSWALVILGEMLISP 405 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhH
Confidence 4455566667778899999999886544 555555555555444321111 1111223333334444444444567
Q ss_pred cccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc
Q 010194 422 TTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 422 ~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
..++++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...+.+.+++++++.++.++.
T Consensus 406 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 471 (491)
T 4aps_A 406 VGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFL 471 (491)
T ss_dssp HHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 788899999999999999999999999999999999998875 467778888888887777766644
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-33 Score=267.59 Aligned_cols=357 Identities=13% Similarity=0.091 Sum_probs=256.8
Q ss_pred HHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 010194 26 VIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTL 105 (515)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~ 105 (515)
..+++..+...++...+.+..|.+.+++ |.+.++.+++.+.+.++..+++++.|+++||+|||+++..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~ 72 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADMARDL----------NVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGM 72 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTS----------SSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHH
Confidence 4556677778888899999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 010194 106 MMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAII 185 (515)
Q Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~ 185 (515)
.+.+++.++.+++++ ++.+++.|+++|++.+...+...+++.|++|+++|++++++.+.+..+|..++|.+++.
T Consensus 73 ~~~~~~~~~~~~~~~------~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 146 (375)
T 2gfp_A 73 SIFMLATLVAVTTSS------LTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGL 146 (375)
T ss_dssp HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 999999999999988 89999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHH-HHHhcCCchhhHHHHhccHHHHHHHHHHHHHhh
Q 010194 186 VSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYY-WRMKMPETARYTALVAKNAKQAAADMSKVLQVE 264 (515)
Q Consensus 186 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~-~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
+. +..+||+.|++.++..++..+ ..+++||++++. +++
T Consensus 147 l~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---------------- 185 (375)
T 2gfp_A 147 LD-----------------------TMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD--APR---------------- 185 (375)
T ss_dssp SS-----------------------CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT--CCC----------------
T ss_pred HH-----------------------HhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC--ccc----------------
Confidence 84 445699999987777666554 446678876531 000
Q ss_pred hhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccchhHHHHHHHH
Q 010194 265 LEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTMNAIEEVYKIA 343 (515)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 343 (515)
++..++.++.++++. ++...+..+......+....+.|.++++ .|+++. ..
T Consensus 186 ---------~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~------------~~ 237 (375)
T 2gfp_A 186 ---------TRLLTSYKTLFGNSG-------FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSM------------TV 237 (375)
T ss_dssp ---------CCTTTCSTHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHH------------HH
T ss_pred ---------ccHHHHHHHHhcCcc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH------------HH
Confidence 011122333333322 2223333334444555555566665554 333222 12
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHH-HHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccc
Q 010194 344 RAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFF-MTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTT 422 (515)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (515)
........++.+++.++.+++.||++++. ..+... ...+...+..... ...+.+......+..++......+.
T Consensus 238 g~~~~~~~~~~~~~~~~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~g~~~~~~~~~ 311 (375)
T 2gfp_A 238 SILFILPIPAAFFGAWFAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDWF----GVMNVWTLLVPAALFFFGAGMLFPL 311 (375)
T ss_dssp HHHHHTHHHHHHHHHHHHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHHH----HHHHHHHHHHHHHHHHHHHHHTSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh----ccccHHHHHHHHHHHHHHHHHhhHH
Confidence 23455566777888888888888887722 222222 1111111111100 0012222222223333333334677
Q ss_pred ccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhccCchHHHHHH
Q 010194 423 TFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADTSGVKKALLIL 474 (515)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~ 474 (515)
..++..|..| ++|+++.|+.+...++|..++|.+.+.+.+..++...+.+.
T Consensus 312 ~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~ 362 (375)
T 2gfp_A 312 ATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMT 362 (375)
T ss_dssp THHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 7788899998 89999999999999999999999999998877777666554
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=249.99 Aligned_cols=142 Identities=14% Similarity=0.190 Sum_probs=127.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhh-hhhhHHHHHHHHHHHHHHHhhhcC-CCCchhHHHHHHHHHHHhhhccc
Q 010194 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKM-GRKRVYGMTLMMMVICSLASGLSF-GKEPKAVMITLCFFRFWLGFGIG 142 (515)
Q Consensus 65 ~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~-Grr~~l~~~~~~~~i~~~~~~~~~-~~~~~~~~~~l~~~r~l~G~~~g 142 (515)
.+..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+++++++ + ++.+++.|++.|++.+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~ 124 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS------VQGFYTGLFLIALGSG 124 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSC------HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccc------HHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999 999999999999999999999998 7 8999999999999999
Q ss_pred cccchhhHhhhhccccccchhHHHH---HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHH
Q 010194 143 GDYPLSATIMSEYANKKTRGAFIAA---VFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIIL 219 (515)
Q Consensus 143 ~~~~~~~~~i~e~~~~~~r~~~~~~---~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f 219 (515)
...+...+++.|++|+++|+++.+. ...+.++|.+++|.+++.+.+ ..+||+.|
T Consensus 125 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~-----------------------~~g~~~~f 181 (524)
T 2xut_A 125 GIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK-----------------------NFGAAVAF 181 (524)
T ss_dssp TTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH-----------------------TSCHHHHH
T ss_pred ccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----------------------cccHHHHH
Confidence 9999999999999999999877666 889999999999999988853 34699999
Q ss_pred HHhHHHHHHHHHHHHh
Q 010194 220 MFGAIPALLTYYWRMK 235 (515)
Q Consensus 220 ~~~~~~~~~~~~~~~~ 235 (515)
++.++..++..+..++
T Consensus 182 ~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 182 GIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9977776665554443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-29 Score=246.61 Aligned_cols=369 Identities=14% Similarity=0.075 Sum_probs=222.6
Q ss_pred HHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH---Hhh
Q 010194 41 CISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSL---ASG 116 (515)
Q Consensus 41 ~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~---~~~ 116 (515)
...+.+|. +.+++ |.+..+.|++.+.+.++..++++++|+++||+|||++++.+..+++++.. ...
T Consensus 25 ~~~~~~~~~l~~~~----------g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~ 94 (417)
T 2cfq_A 25 AYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI 94 (417)
T ss_dssp HHTTTHHHHHHTTT----------CCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT
T ss_pred HHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444 55667 89999999999999999999999999999999999999988887755321 112
Q ss_pred hcCCCCchhHH-HHHHHHHHHhhhccccccchhhHhhhhcccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 010194 117 LSFGKEPKAVM-ITLCFFRFWLGFGIGGDYPLSATIMSEYANK--KTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKAN 193 (515)
Q Consensus 117 ~~~~~~~~~~~-~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~ 193 (515)
+++. . ..++..+++.|++.+...+.....+.++.++ ++|+...+.......+|..++|.+++.+.+
T Consensus 95 ~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----- 163 (417)
T 2cfq_A 95 FGPL------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----- 163 (417)
T ss_dssp HHHH------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-----
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 2211 1 1134556677766665555555555555543 356777788777888999999999998853
Q ss_pred CCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHhhhhHhhhhHH
Q 010194 194 FPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQVELEAEQEKVE 273 (515)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (515)
.+||+.|++.++..++..+..++.+|+|+.. .++++++ + +
T Consensus 164 -------------------~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------------------~-~ 203 (417)
T 2cfq_A 164 -------------------INNQFVFWLGSGCALILAVLLFFAKTDAPSS-ATVANAV-------------------G-A 203 (417)
T ss_dssp -------------------HCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS-SCSSSSS-------------------S-S
T ss_pred -------------------hchhHHHHHHHHHHHHHHHHHHHcCcccccc-ccccccc-------------------c-c
Confidence 2499999887666555444444444433210 0000000 0 0
Q ss_pred HhhcCC---cchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHH
Q 010194 274 QEKGKN---DFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIA 350 (515)
Q Consensus 274 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (515)
++++.+ .++.++++. ++......+.....++....+.|.++.+. +... ....... .......
T Consensus 204 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~~~~~~~-g~~~~~~ 268 (417)
T 2cfq_A 204 NHSAFSLKLALELFRQPK-------LWFLSLYVIGVSCTYDVFDQQFANFFTSF-FATG------EQGTRVF-GYVTTMG 268 (417)
T ss_dssp CCCCCCHHHHHHHTTCHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSSH------HHHTHHH-HHHHHHH
T ss_pred ccccccHHHHHHHhcCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhcc------CCChhHH-HHHHHHH
Confidence 000000 111222211 11112222222222233333355554432 1100 0001111 2244455
Q ss_pred HhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccccccccccc
Q 010194 351 LCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEI 430 (515)
Q Consensus 351 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (515)
.++.+++.++.++++||+|||+.+..+..+.+++.+.+.... +.+..... ............+..+.+..|.
T Consensus 269 ~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~ 340 (417)
T 2cfq_A 269 ELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------SALEVVIL-KTLHMFEVPFLLVGCFKYITSQ 340 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCC-------SHHHHHHH-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhc-------cHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888999999999999998887777766655543221 12222222 1111111111223456788999
Q ss_pred CchhhhhhhhHHH-HHHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 431 FPARLRSTCHGIS-AASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 431 ~p~~~~~~~~g~~-~~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
+|++.|+++.++. +....+|++++|.+.|.+.+..|+...|.+.+++++++.++.+ ..+|+++
T Consensus 341 ~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 341 FEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp SCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999995 7888899999999999999988888889888888888877665 4454433
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=6.5e-13 Score=129.60 Aligned_cols=177 Identities=12% Similarity=-0.018 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHH
Q 010194 295 HLIGTTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQ 374 (515)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 374 (515)
.++...+..+.............|.+.++.+.++.+.+. ......++..++.++.|+++||+|||+.+
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~i~~~~~G~l~dr~g~r~~l 94 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGL------------IQSAFYFGYFIIPIPAGILMKKLSYKAGI 94 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHH------------HHHHHHHHHHTTHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHhHHHHHHHhcchHHH
Confidence 344444555555566667777788888888877655332 56667778888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHH
Q 010194 375 LMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVG 454 (515)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~ 454 (515)
..+..+.+++.++...... ........+..++.+.+.....+...+++.|.+|+++|++++++.+....+|..++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g 169 (438)
T 3o7q_A 95 ITGLFLYALGAALFWPAAE-----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIA 169 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccc-----cccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999888887733211 01233333333444444444566778899999999999999999999999999999
Q ss_pred HHHHHHhh-hccC-------------------------chHHHHHHHHHHHHHHHHHHhc
Q 010194 455 AFGFLYLA-DTSG-------------------------VKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 455 ~~~~~~l~-~~~g-------------------------~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
|.+.+.+. +..+ |+..|++.+++.++..+..++.
T Consensus 170 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 170 VVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp HHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 5544 7888877776666665555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.6e-12 Score=127.35 Aligned_cols=171 Identities=16% Similarity=0.106 Sum_probs=136.7
Q ss_pred HHHhHHHHHHhhhHHHHHHhhhhhh-hhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh--hhhhHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKLLGRI-YYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM--GRKRVYGMT 104 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~--Grr~~l~~~ 104 (515)
..+..+........+....|.+.++ + +.+..+.+++.+...++..++.++.|++.||+ |||+.+..+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 326 (451)
T 1pw4_A 257 IAIANVFVYLLRYGILDWSPTYLKEVK----------HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF 326 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTBS----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 3334444444444555666666555 6 89999999999999999999999999999999 999998888
Q ss_pred HHHHH-HHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHH-HHHHHHHH
Q 010194 105 LMMMV-ICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGF-GILSGGMV 182 (515)
Q Consensus 105 ~~~~~-i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~-G~~~g~~l 182 (515)
..+.. ++.++..+.++.+ .+.+.+..++.|++.+...+....++.|.+|+++|+++.++.+....+ |..+++.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~ 402 (451)
T 1pw4_A 327 FMTLVTIATIVYWMNPAGN----PTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI 402 (451)
T ss_dssp HHHHHHHHHHHTTSCCTTC----HHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccC----HHHHHHHHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77776 6777666664211 677888889999988888888899999999999999999999999999 99999999
Q ss_pred HHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHHHHHHHHh
Q 010194 183 AIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMK 235 (515)
Q Consensus 183 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 235 (515)
.+.+.+ ..||+..|++.++..++..+..++
T Consensus 403 ~g~l~~-----------------------~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 403 VGYTVD-----------------------FFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp HHHHHH-----------------------SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------------------hcCcHHHHHHHHHHHHHHHHHHHH
Confidence 999863 345999999877777666555444
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.4e-12 Score=129.34 Aligned_cols=171 Identities=13% Similarity=0.075 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHhH------hcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh-h
Q 010194 296 LIGTTVTWFLLDVAYYSQNLFQKDIFTA------IGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDK-I 368 (515)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~ 368 (515)
++...+..+.....++....+.+.++.+ .++++.+ .........++..++.++.|+++|| +
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~------------~~~~~~~~~~~~~~~~~~~g~l~dr~~ 82 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRAT------------AASIMAIYASMVYLSGTIGGFVADRII 82 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4445555555556677766666666655 3444333 2225666777888899999999999 8
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhh--hhhhhHHHHHH
Q 010194 369 GRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARL--RSTCHGISAAS 446 (515)
Q Consensus 369 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~ 446 (515)
|||+.+..+..+..++.++..... +.+ ...+..++.+.+.....+...+++.|.+|++. |+.+.++.+..
T Consensus 83 g~r~~~~~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 83 GARPAVFWGGVLIMLGHIVLALPF-------GAS-ALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSCC-------STT-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHhh-------hHH-HHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence 999999999988888887766532 122 22233333333333345677888999999888 78888889999
Q ss_pred hhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH
Q 010194 447 GKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF 486 (515)
Q Consensus 447 ~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~ 486 (515)
.++|..++|.+.+.+.+..||+..|++.++..+++.+..+
T Consensus 155 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 155 INLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988777777766655
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2e-12 Score=125.04 Aligned_cols=147 Identities=7% Similarity=0.002 Sum_probs=119.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccccc
Q 010194 66 PDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDY 145 (515)
Q Consensus 66 s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~ 145 (515)
+....++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++ .+.+++..++.+++.+...
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~ 330 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS------ALEVVILKTLHMFEVPFLL 330 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS------HHHHHHHTTHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc------HHHHHHHHHHHHHHHHHHH
Confidence 3456788888888899999999999999999999999999888888777777776 6778888888888777666
Q ss_pred chhhHhhhhccccccchhHHHH-HHHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHH
Q 010194 146 PLSATIMSEYANKKTRGAFIAA-VFAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAI 224 (515)
Q Consensus 146 ~~~~~~i~e~~~~~~r~~~~~~-~~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~ 224 (515)
+....++.|.+|++.|+++.++ ++....+|..++|.+++.+.+. .|++..|.+.++
T Consensus 331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~-----------------------~g~~~~f~~~~~ 387 (417)
T 2cfq_A 331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES-----------------------IGFQGAYLVLGL 387 (417)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH-----------------------SHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh-----------------------cCcHHHHHHHHH
Confidence 7778999999999999999998 4788889999999999988643 348888888777
Q ss_pred HHHHHHHHH-HhcCCchh
Q 010194 225 PALLTYYWR-MKMPETAR 241 (515)
Q Consensus 225 ~~~~~~~~~-~~~~e~p~ 241 (515)
..++..+.. +..||.++
T Consensus 388 ~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 388 VALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHHHHHhhhcCCCc
Confidence 776655543 44565443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-11 Score=121.42 Aligned_cols=179 Identities=15% Similarity=0.082 Sum_probs=121.4
Q ss_pred HHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 010194 35 DAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLA 114 (515)
Q Consensus 35 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~ 114 (515)
.......+....+.+.++. +.+............+...++.++.+++.||+|||+.++.+.....++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~ 358 (491)
T 4gc0_A 289 QFVGINVVLYYAPEVFKTL----------GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFS 358 (491)
T ss_dssp HHTCHHHHHHHHHHHHHHS----------SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHhcchHHHHhc----------CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHH
Confidence 3333344455567777777 777777777788888899999999999999999999999988888877766
Q ss_pred hhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 010194 115 SGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAAFKANF 194 (515)
Q Consensus 115 ~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G~~~g~~l~~~l~~~~~~~~ 194 (515)
.+...............+.-+..+++.+ ..+....+.+|.+|.+.|++++++......+|..+++.+.+.+.+....
T Consensus 359 l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~-- 435 (491)
T 4gc0_A 359 LGTAFYTQAPGIVALLSMLFYVAAFAMS-WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL-- 435 (491)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHTT-TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH--
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHhH-HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 6543221111112222223333333333 3467788999999999999999999999999999888877665322110
Q ss_pred CCCccCCCCCCccccCCCchHHHHHHHhHHHHHHH-HHHHHhcCCchh
Q 010194 195 PAPIYSANPAASTVPEADYIWRIILMFGAIPALLT-YYWRMKMPETAR 241 (515)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~-~~~~~~~~e~p~ 241 (515)
....++.+.|++.+..+++. ++.++++||+..
T Consensus 436 ---------------~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg 468 (491)
T 4gc0_A 436 ---------------VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 468 (491)
T ss_dssp ---------------HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTT
T ss_pred ---------------HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCC
Confidence 01223556677766666554 445678999853
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.3e-12 Score=124.58 Aligned_cols=171 Identities=10% Similarity=-0.021 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHH
Q 010194 303 WFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMT 382 (515)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~ 382 (515)
.+.............|.+.++.|.++.+.+. ......++..++.++.|+++||+|||+.+..+..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~------------~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~ 76 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQS------------VMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFM 76 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHHH------------HHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence 3333444444555566676776766544222 5566677778888899999999999999999998888
Q ss_pred HHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhh
Q 010194 383 VFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLA 462 (515)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~ 462 (515)
++.++..... +........+..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.
T Consensus 77 ~~~~~~~~~~--------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~ 148 (375)
T 2gfp_A 77 LATLVAVTTS--------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLD 148 (375)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhc--------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8887776654 23333333344444444456677788899999999999999999999999999999999999
Q ss_pred hccCchHHHHHHHHHHHHHHHHHH-hccccCC
Q 010194 463 DTSGVKKALLILGGANFLGMLFTF-LVPESKG 493 (515)
Q Consensus 463 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 493 (515)
+..+|+..+.+.+++.++..+... .+||+++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 149 TMWNWRACYLFLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCCCCCSSCCCST
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHCcccCC
Confidence 888999999888877777665443 5565443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-11 Score=120.38 Aligned_cols=170 Identities=12% Similarity=0.016 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHhhhhhHHHhH-hc------ccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhh-ch
Q 010194 299 TTVTWFLLDVAYYSQNLFQKDIFTA-IG------WIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKI-GR 370 (515)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~ 370 (515)
..+..+.....++....+.+.++.+ .+ +++.+.+. ......++.+++.++.|+++||+ ||
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~------------~~~~~~~~~~~~~~~~G~l~dr~~g~ 84 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKD------------VFHSFVIGVYFFPLLGGWIADRFFGK 84 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHH------------HHHHHHHHHHHTHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344444455666666666666554 56 55554322 55666777788889999999999 99
Q ss_pred hhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHH---HHHHh
Q 010194 371 FAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGI---SAASG 447 (515)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~ 447 (515)
|+.+..+.++..++.++..... .....+.+..++.+.+.....+...+++.|.+|++.|+++.+. .+...
T Consensus 85 r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 157 (524)
T 2xut_A 85 YNTILWLSLIYCVGHAFLAIFE-------HSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI 157 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-------SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH
Confidence 9999998888888777765532 0222333333444444445567788899999999999776666 88899
Q ss_pred hhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHh
Q 010194 448 KAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFL 487 (515)
Q Consensus 448 ~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 487 (515)
++|..++|.+.+.+.+..||+..|.+.+++.+++.+..++
T Consensus 158 ~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 158 NFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998889999999888877776665543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 515 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-15 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 75.9 bits (185), Expect = 3e-15
Identities = 52/441 (11%), Positives = 127/441 (28%), Gaps = 51/441 (11%)
Query: 65 LPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPK 124
+ G + D+ + L++ L + F
Sbjct: 56 FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVML--FMGFVPWAT 113
Query: 125 AVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAI 184
+ + + F G+ G +P M + ++K RG ++ G ++ +
Sbjct: 114 SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFL 173
Query: 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTA 244
+ A F + + AL + P++
Sbjct: 174 LGMAWFNDWH------------------AALYMPAFCAILVALFAFAMMRDTPQSCG--- 212
Query: 245 LVAKNAKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWF 304
+ + + + + + E+ + + ++V + L F
Sbjct: 213 ------------LPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVF 260
Query: 305 LLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVAL 364
+ + Y + + + + + + +PG +
Sbjct: 261 VYLLRYGILDWSPTYLKEVKHFA------------LDKSSWAYFLYEYAGIPGTLLCGWM 308
Query: 365 IDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTF 424
DK+ R G FFMT+ A + + + ++ + F +GP
Sbjct: 309 SDKVFRGNRGATGVFFMTLVTIATIVYWMNPA---GNPTVDMICMIVIGFLIYGPVMLIG 365
Query: 425 VVPAEIFPARLRSTCHGISAASGK-AGAIVGAFGFLYLADTSGVKKALLILGGANFLGML 483
+ E+ P + T G + G G++ + Y D G +++ G + L ++
Sbjct: 366 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVI 425
Query: 484 FTFLVPESKGKSLEEMSGEAE 504
+V + + E++ E
Sbjct: 426 LLIVVMIGEKRRHEQLLQELV 446
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 44.8 bits (104), Expect = 2e-05
Identities = 44/426 (10%), Positives = 88/426 (20%), Gaps = 66/426 (15%)
Query: 70 ASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMIT 129
+ +L Q FG L DK+G ++ + M++ + I
Sbjct: 45 TGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNIL 104
Query: 130 LCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGMVAIIVSAA 189
+ + G + A + G G
Sbjct: 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALG---------- 154
Query: 190 FKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALLTYYWRMKMPETARYTALVAKN 249
+ + + + +L +
Sbjct: 155 -------------ASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSAT----- 196
Query: 250 AKQAAADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVA 309
A K LF + L++IG + T+ + D
Sbjct: 197 --------------VANAVGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQ 242
Query: 310 YYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIG 369
+ + + T A I
Sbjct: 243 FANFFTSFFATGEQGTRVFGYVTTM-----------------------GELLNASIMFFA 279
Query: 370 RFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAE 429
I +G + + + VV+ F F
Sbjct: 280 PLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS 339
Query: 430 IFPARLRSTCHGI-SAASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLV 488
F R +T + + + I + + ++ G + A L+LG L +
Sbjct: 340 QFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399
Query: 489 PESKGK 494
G
Sbjct: 400 LSGPGP 405
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 515 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.97 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.54 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.46 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-39 Score=316.61 Aligned_cols=410 Identities=14% Similarity=0.145 Sum_probs=284.4
Q ss_pred ccchhHHHHHHHHHHhHHHHHHhhhHHHHHHhhhhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 010194 16 KTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKM 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~ 95 (515)
+.++++|.++..++++++..++++..++.+.|.+. |+ |+|.++.|++.+++.+++.++++++|+++||+
T Consensus 18 ~~~~~~w~i~~~~~~~~~~~~~~~~~~~~~~p~~~-~~----------g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~ 86 (447)
T d1pw4a_ 18 TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV-EQ----------GFSRGDLGFALSGISIAYGFSKFIMGSVSDRS 86 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT-SS----------TTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh----------CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34566788888899999999999999999999875 57 89999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhccccccchhHHHHHHHHHHHH
Q 010194 96 GRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFG 175 (515)
Q Consensus 96 Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~~~r~~~~~~~~~~~~~G 175 (515)
|||+++.++.++.+++.++++++... ..+++.+++.|++.|++.+...+...+++.|++|+++|++++++.+.+..+|
T Consensus 87 g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g 164 (447)
T d1pw4a_ 87 NPRVFLPAGLILAAAVMLFMGFVPWA--TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVG 164 (447)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHCHHH--HSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhccccchh--hhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchh
Confidence 99999999999999999998876420 0016889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHhHHHHHH-HHHHHHhcCCchhhHHHHhccHHHHH
Q 010194 176 ILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFGAIPALL-TYYWRMKMPETARYTALVAKNAKQAA 254 (515)
Q Consensus 176 ~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~-~~~~~~~~~e~p~~~~~~~~~~~~~~ 254 (515)
..+++.+++.+....+ +||+.|++.++..++ .++.+++.+|+|+.. .....++..
T Consensus 165 ~~i~~~~~~~~~~~~~----------------------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 220 (447)
T d1pw4a_ 165 GGIPPLLFLLGMAWFN----------------------DWHAALYMPAFCAILVALFAFAMMRDTPQSC--GLPPIEEYK 220 (447)
T ss_dssp HTSHHHHHHHHHHHTC----------------------CSTTCTHHHHHHHHHHHHHHHHHCCCSSTTT--CCCSCTTTC
T ss_pred hhhhhhhhhhHhhhhh----------------------cccccchhhhhhHHHHHHHHHHhcccchhhc--ccchhhhhh
Confidence 9999999888765433 499999987666655 455556677776542 111111000
Q ss_pred HHHHHHHHhhhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhHHHhH-hcccCCcccc
Q 010194 255 ADMSKVLQVELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIGTTVTWFLLDVAYYSQNLFQKDIFTA-IGWIPKAKTM 333 (515)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 333 (515)
+. ..+..+.+.+++...++.......+. +.++......++.....+....+.+.++.+ .+++...
T Consensus 221 ~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 286 (447)
T d1pw4a_ 221 ND---------YPDDYNEKAEQELTAKQIFMQYVLPN--KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDK--- 286 (447)
T ss_dssp CC----------------------CCTHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHH---
T ss_pred hh---------cccchhhccccccchhhHHHHHHHcC--chHHHHHHHhhhhhhhhhcchhhhhhhcccccccccch---
Confidence 00 00000001111111222222221111 234444444455555666666677776654 2332221
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHH
Q 010194 334 NAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFF 413 (515)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (515)
.........+..+++.++.+++.||++|++..........+......... . ..........+..+..+
T Consensus 287 ---------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~g 354 (447)
T d1pw4a_ 287 ---------SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW--M-NPAGNPTVDMICMIVIG 354 (447)
T ss_dssp ---------HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT--S-CCTTCHHHHHHHHHHHH
T ss_pred ---------hhhhhhcchhhhhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHH--h-cccccHHHHHHHHHHHH
Confidence 22255666777888999999999999987655444433333332222221 1 11122333333333334
Q ss_pred HhhcCccccccccccccCchhhhhhhhHHHHHHhhh-hHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHHhc
Q 010194 414 FSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKA-GAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTFLV 488 (515)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 488 (515)
+...+..+....+..|.+|++.|+++.|+.+.+.++ |..++|.+.|.+.|..|+...+.+.+++++++.++.+++
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 430 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 430 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 444444566778889999999999999999999887 456789999999999999999988888887777766643
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=9.9e-30 Score=244.58 Aligned_cols=390 Identities=14% Similarity=0.067 Sum_probs=245.2
Q ss_pred HHHhHHHHHHhhhHHHHHHhh-hhhhhhccCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q 010194 28 AGMGFFTDAYDLFCISLVTKL-LGRIYYYKEGSDSPGTLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLM 106 (515)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~ 106 (515)
+.+..+...+......+.+|. +.+++ |.|.++.|++.+++.++..++++++|+++||+||||+++++..
T Consensus 12 l~~~~f~~~~~~~~~~~~l~~~l~~~~----------g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~ 81 (417)
T d1pv7a_ 12 FGLFFFFYFFIMGAYFPFFPIWLHDIN----------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIIT 81 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 334445555556666777775 66778 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhccccccchhhHhhhhcccc--ccchhHHHHHHHHHHHHHHHHHHHHH
Q 010194 107 MMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGGDYPLSATIMSEYANK--KTRGAFIAAVFAMQGFGILSGGMVAI 184 (515)
Q Consensus 107 ~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~e~~~~--~~r~~~~~~~~~~~~~G~~~g~~l~~ 184 (515)
+..++.++..+..+. .......++.+.+.+.+.+...........+..++ +++.+..+........+..+++.+++
T Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (417)
T d1pv7a_ 82 GMLVMFAPFFIFIFG--PLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVG 159 (417)
T ss_dssp HHHHTHHHHHHHTHH--HHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh--hhHHHHHHHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhcccccccccccc
Confidence 999988888877651 00022345666666666666555555555444433 34556677788888899999999998
Q ss_pred HHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHH-hHHHHHHHHHHHHhcCCchhhHHHHhccHHHHHHHHHHHHHh
Q 010194 185 IVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMF-GAIPALLTYYWRMKMPETARYTALVAKNAKQAAADMSKVLQV 263 (515)
Q Consensus 185 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~-~~~~~~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
.+... +|+..+.. .....+...+..+..+|+|+.. .++++++
T Consensus 160 ~l~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------- 202 (417)
T d1pv7a_ 160 IMFTI------------------------NNQFVFWLGSGCALILAVLLFFAKTDAPSSA--TVANAVG----------- 202 (417)
T ss_dssp HHHHH------------------------CHHHHHHHHHHHHHHHHHHHHSSCCCSCSSS--CSSHHHH-----------
T ss_pred ccccc------------------------cccccccchhhHHHHHHHHHHHHhcccccch--hhhhhhh-----------
Confidence 88532 25555554 4444555566666777766541 1111000
Q ss_pred hhhHhhhhHHHhhcCCcchhhhhhhhhhhhHHHHH-HHHHHHHHHHHHHHHhhhhhHHHhHhcccCCcccchhHHHHHHH
Q 010194 264 ELEAEQEKVEQEKGKNDFGLFSAKFVRRHGLHLIG-TTVTWFLLDVAYYSQNLFQKDIFTAIGWIPKAKTMNAIEEVYKI 342 (515)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (515)
++++.......+....++..+.... ............... +.+... ... ........
T Consensus 203 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~---~~~-----~~~~~~~~ 260 (417)
T d1pv7a_ 203 ----------ANHSAFSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQF----ANFFTS---FFA-----TGEQGTRV 260 (417)
T ss_dssp ----------SCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHH----HHHHTT---SSS-----CHHHHHHH
T ss_pred ----------hhcccccccccccccccccccchhhhhHHHHHHHHhhhccc----cccccc---ccc-----ccccchhh
Confidence 0001111111111111111111111 111111111111111 111111 000 01111122
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhhcccCCCchHHHHHHHHHHHHHhhcCcccc
Q 010194 343 ARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYHHWTLPDHRIGFVVLYSLTFFFSNFGPNTT 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (515)
.........++..++..+.+++.||.++|+.+..+..+.+++.+.+.... +.+. .....+..+.......+.
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~l~g~~~~~~~~~ 332 (417)
T d1pv7a_ 261 FGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFAT-------SALE-VVILKTLHMFEVPFLLVG 332 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCC-------CHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhcccccc-------ccch-hhHHHHHHHHHHHHHHHH
Confidence 33355566677778888999999999999999998888888777765533 2233 333333333333334567
Q ss_pred ccccccccCchhhhhhhhHHHH-HHhhhhHHHHHHHHHHhhhccCchHHHHHHHHHHHHHHHHHH-hccccCCCCh
Q 010194 423 TFVVPAEIFPARLRSTCHGISA-ASGKAGAIVGAFGFLYLADTSGVKKALLILGGANFLGMLFTF-LVPESKGKSL 496 (515)
Q Consensus 423 ~~~~~~~~~p~~~~~~~~g~~~-~~~~~g~~i~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 496 (515)
..++..|.+|++.|+++.|+.. ....+|..++|.+.|.+.|..|++..+++.+++.++..++.. .++++++.+.
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 408 (417)
T d1pv7a_ 333 CFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSL 408 (417)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTH
T ss_pred HHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccch
Confidence 7788999999999999999865 456689999999999999999999999999888887777666 5555555444
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=6.4e-14 Score=132.86 Aligned_cols=147 Identities=7% Similarity=-0.005 Sum_probs=127.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHhhhcCCCCchhHHHHHHHHHHHhhhcccc
Q 010194 64 TLPDNVASAVNGVALCGTLAGQLFFGWLGDKMGRKRVYGMTLMMMVICSLASGLSFGKEPKAVMITLCFFRFWLGFGIGG 143 (515)
Q Consensus 64 ~~s~~~~g~~~s~~~l~~~i~~~~~G~l~dr~Grr~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~ 143 (515)
+.+....+...+...++..++..+.+++.||+|||+.+..+..+.+++.++..+.++ .+.+++..++.|++.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 255 EQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS------ALEVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC------HHHHHHHHHHHHHHHHH
T ss_pred ccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc------cchhhHHHHHHHHHHHH
Confidence 566778888899999999999999999999999999999999999999999999998 79999999999999999
Q ss_pred ccchhhHhhhhccccccchhHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCCCCccCCCCCCccccCCCchHHHHHHHh
Q 010194 144 DYPLSATIMSEYANKKTRGAFIAAV-FAMQGFGILSGGMVAIIVSAAFKANFPAPIYSANPAASTVPEADYIWRIILMFG 222 (515)
Q Consensus 144 ~~~~~~~~i~e~~~~~~r~~~~~~~-~~~~~~G~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~wr~~f~~~ 222 (515)
..+...+++.|.+|+++|+++.++. +....+|..++|.+.+.+.+.. ||+..|++.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~-----------------------g~~~~~~~~ 385 (417)
T d1pv7a_ 329 LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESI-----------------------GFQGAYLVL 385 (417)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHH-----------------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------CHHHHHHHH
Confidence 9999999999999999999999975 5667899999999999997544 499999887
Q ss_pred HHHHHHHHH-HHHhcCCc
Q 010194 223 AIPALLTYY-WRMKMPET 239 (515)
Q Consensus 223 ~~~~~~~~~-~~~~~~e~ 239 (515)
++..++..+ ..+.++++
T Consensus 386 ~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 386 GLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 766665444 44455543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3.4e-13 Score=129.56 Aligned_cols=162 Identities=10% Similarity=0.008 Sum_probs=116.3
Q ss_pred HhhhhhHHHhHhcccCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhh
Q 010194 313 QNLFQKDIFTAIGWIPKAKTMNAIEEVYKIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPY 392 (515)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 392 (515)
.....|.+ ++.|+++.+.+. ......++..++.++.|+++||+|||+.+..+.++.+++.++.+...
T Consensus 44 ~~~~~p~~-~~~g~s~~~~g~------------~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~ 110 (447)
T d1pw4a_ 44 FALAMPYL-VEQGFSRGDLGF------------ALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 110 (447)
T ss_dssp HHHHHHHT-TSSTTCSSCHHH------------HHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHH-HHhCcCHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccc
Confidence 34444543 456777777444 56667778888999999999999999999999999888887776543
Q ss_pred hcccCCCchHHHHHHHHHHHHHhhcCccccccccccccCchhhhhhhhHHHHHHhhhhHHHHHHHHHHhhhc-cCchHHH
Q 010194 393 HHWTLPDHRIGFVVLYSLTFFFSNFGPNTTTFVVPAEIFPARLRSTCHGISAASGKAGAIVGAFGFLYLADT-SGVKKAL 471 (515)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~i~~~~~~~l~~~-~g~~~~~ 471 (515)
... .......+..+..+.+.....+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+. .+|+..+
T Consensus 111 ~~~----~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~ 186 (447)
T d1pw4a_ 111 WAT----SSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 186 (447)
T ss_dssp HHH----SSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred hhh----hhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccc
Confidence 211 11222333333333333334566778889999999999999999999999999999998887664 4688888
Q ss_pred HHHHHHHHHHHHHHH-hcccc
Q 010194 472 LILGGANFLGMLFTF-LVPES 491 (515)
Q Consensus 472 ~~~~~~~~~~~~~~~-~~~~~ 491 (515)
++.+.+.++..++.+ +.++.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~ 207 (447)
T d1pw4a_ 187 YMPAFCAILVALFAFAMMRDT 207 (447)
T ss_dssp HHHHHHHHHHHHHHHHHCCCS
T ss_pred hhhhhhHHHHHHHHHHhcccc
Confidence 887777776666655 44443
|