Query 010195
Match_columns 515
No_of_seqs 254 out of 2055
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 22:09:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00165 aspartyl protease; Pr 100.0 6E-65 1.3E-69 543.0 40.4 359 42-515 63-447 (482)
2 cd05490 Cathepsin_D2 Cathepsin 100.0 2.3E-62 4.9E-67 503.0 38.0 324 85-513 1-325 (325)
3 cd06098 phytepsin Phytepsin, a 100.0 1.4E-62 3.1E-67 502.9 35.5 317 81-513 1-317 (317)
4 cd05486 Cathespin_E Cathepsin 100.0 7.3E-62 1.6E-66 497.4 35.6 316 91-513 1-316 (316)
5 cd05487 renin_like Renin stimu 100.0 2E-61 4.3E-66 496.3 38.4 325 83-514 1-326 (326)
6 cd05485 Cathepsin_D_like Cathe 100.0 9.8E-61 2.1E-65 491.8 37.7 327 81-513 2-329 (329)
7 cd05478 pepsin_A Pepsin A, asp 100.0 1.9E-60 4.1E-65 487.2 37.2 316 82-513 2-317 (317)
8 cd05488 Proteinase_A_fungi Fun 100.0 6.2E-60 1.3E-64 484.0 36.8 320 81-513 1-320 (320)
9 cd05477 gastricsin Gastricsins 100.0 1E-59 2.2E-64 481.9 38.1 317 88-514 1-318 (318)
10 PTZ00147 plasmepsin-1; Provisi 100.0 7.6E-59 1.6E-63 492.5 39.8 327 73-515 122-450 (453)
11 PTZ00013 plasmepsin 4 (PM4); P 100.0 3E-58 6.5E-63 487.1 39.5 329 71-515 119-449 (450)
12 PF00026 Asp: Eukaryotic aspar 100.0 1.8E-55 3.8E-60 448.5 29.7 316 90-514 1-317 (317)
13 cd06097 Aspergillopepsin_like 100.0 7.2E-52 1.6E-56 416.1 30.1 272 91-513 1-278 (278)
14 cd05473 beta_secretase_like Be 100.0 8E-51 1.7E-55 423.8 31.6 317 89-515 2-346 (364)
15 KOG1339 Aspartyl protease [Pos 100.0 5.6E-50 1.2E-54 421.9 31.9 321 78-514 34-392 (398)
16 cd06096 Plasmepsin_5 Plasmepsi 100.0 7.4E-50 1.6E-54 410.5 30.2 283 89-515 2-324 (326)
17 cd05474 SAP_like SAPs, pepsin- 100.0 3.8E-49 8.2E-54 399.0 32.7 278 90-514 2-295 (295)
18 PLN03146 aspartyl protease fam 100.0 2E-48 4.3E-53 413.1 34.6 304 87-514 81-426 (431)
19 cd05472 cnd41_like Chloroplast 100.0 4.6E-48 9.9E-53 392.5 29.0 287 90-514 1-297 (299)
20 cd05471 pepsin_like Pepsin-lik 100.0 2.1E-46 4.5E-51 375.1 33.5 227 91-319 1-231 (283)
21 cd05476 pepsin_A_like_plant Ch 100.0 2.6E-45 5.6E-50 366.1 27.9 248 90-515 1-264 (265)
22 cd05475 nucellin_like Nucellin 100.0 4.8E-45 1.1E-49 365.8 28.1 258 89-515 1-272 (273)
23 cd05489 xylanase_inhibitor_I_l 100.0 5.6E-41 1.2E-45 348.7 26.9 313 97-514 2-361 (362)
24 cd05470 pepsin_retropepsin_lik 99.9 3.5E-22 7.6E-27 172.1 12.3 108 93-201 1-109 (109)
25 PF14543 TAXi_N: Xylanase inhi 99.9 7.2E-21 1.6E-25 176.5 16.0 136 91-249 1-164 (164)
26 PF14541 TAXi_C: Xylanase inhi 99.7 9.9E-18 2.1E-22 155.0 12.7 153 269-513 1-161 (161)
27 cd05483 retropepsin_like_bacte 98.0 9E-06 2E-10 67.5 6.0 93 89-203 1-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.4 0.00061 1.3E-08 59.9 8.0 101 81-203 2-103 (121)
29 PF05184 SapB_1: Saposin-like 97.1 0.00074 1.6E-08 46.7 3.9 37 388-424 3-39 (39)
30 PF13650 Asp_protease_2: Aspar 96.6 0.0086 1.9E-07 48.7 7.3 88 93-202 1-89 (90)
31 PF03489 SapB_2: Saposin-like 96.1 0.00052 1.1E-08 46.4 -2.4 34 324-357 2-35 (35)
32 PF11925 DUF3443: Protein of u 95.7 0.096 2.1E-06 53.9 11.0 198 90-307 23-272 (370)
33 cd05479 RP_DDI RP_DDI; retrope 95.5 0.054 1.2E-06 47.7 7.5 94 85-203 11-107 (124)
34 COG3577 Predicted aspartyl pro 95.0 0.13 2.8E-06 48.8 8.7 92 76-182 91-183 (215)
35 cd05479 RP_DDI RP_DDI; retrope 93.6 0.45 9.7E-06 41.8 8.7 25 487-511 100-124 (124)
36 cd05484 retropepsin_like_LTR_2 93.5 0.21 4.6E-06 41.2 6.1 76 91-184 1-79 (91)
37 PF08284 RVP_2: Retroviral asp 92.7 0.33 7.1E-06 43.5 6.4 27 487-513 105-131 (135)
38 TIGR02281 clan_AA_DTGA clan AA 92.0 3 6.5E-05 36.5 11.5 37 266-312 8-44 (121)
39 cd06095 RP_RTVL_H_like Retrope 91.5 0.68 1.5E-05 37.8 6.6 81 94-203 2-84 (86)
40 TIGR03698 clan_AA_DTGF clan AA 83.8 5.6 0.00012 34.0 7.6 23 487-509 85-107 (107)
41 smart00741 SapB Saposin (B) Do 83.4 1.6 3.6E-05 33.7 3.9 37 388-424 2-38 (76)
42 PF13975 gag-asp_proteas: gag- 82.7 1.9 4.2E-05 33.9 4.0 34 87-122 5-38 (72)
43 PF13650 Asp_protease_2: Aspar 76.8 3.3 7.2E-05 33.1 3.8 29 277-312 3-31 (90)
44 PF12384 Peptidase_A2B: Ty3 tr 76.5 9.6 0.00021 35.1 6.8 27 290-316 45-71 (177)
45 PF00077 RVP: Retroviral aspar 72.7 4.2 9.1E-05 33.7 3.4 29 92-122 7-35 (100)
46 cd05484 retropepsin_like_LTR_2 71.6 5.5 0.00012 32.6 3.9 30 276-312 4-33 (91)
47 PF13975 gag-asp_proteas: gag- 71.4 6.8 0.00015 30.8 4.1 29 277-312 13-41 (72)
48 cd05483 retropepsin_like_bacte 65.8 10 0.00022 30.5 4.4 30 276-312 6-35 (96)
49 PF09668 Asp_protease: Asparty 62.7 7.6 0.00017 34.2 3.1 91 88-202 22-114 (124)
50 smart00741 SapB Saposin (B) Do 62.3 1.4 3.1E-05 34.1 -1.5 37 321-357 40-76 (76)
51 cd06095 RP_RTVL_H_like Retrope 61.8 9.4 0.0002 31.0 3.3 29 277-312 3-31 (86)
52 cd05482 HIV_retropepsin_like R 55.3 15 0.00033 30.2 3.5 27 94-122 2-28 (87)
53 KOG1340 Prosaposin [Lipid tran 53.4 7.5 0.00016 37.6 1.6 88 325-424 78-166 (218)
54 PF07966 A1_Propeptide: A1 Pro 52.6 13 0.00028 24.0 2.1 22 43-64 1-22 (29)
55 PF00077 RVP: Retroviral aspar 47.3 14 0.00031 30.5 2.2 27 276-309 9-35 (100)
56 PF08284 RVP_2: Retroviral asp 46.5 78 0.0017 28.1 6.9 29 89-119 20-48 (135)
57 COG3577 Predicted aspartyl pro 44.8 41 0.00089 32.2 5.0 30 276-312 109-138 (215)
58 PF12384 Peptidase_A2B: Ty3 tr 44.3 27 0.00059 32.2 3.6 29 92-120 34-62 (177)
59 KOG1340 Prosaposin [Lipid tran 44.2 5.1 0.00011 38.8 -1.1 43 317-359 163-205 (218)
60 cd05481 retropepsin_like_LTR_1 42.2 26 0.00057 29.0 3.0 22 292-313 12-33 (93)
61 PF09668 Asp_protease: Asparty 41.2 31 0.00066 30.4 3.4 30 276-312 28-57 (124)
62 COG5550 Predicted aspartyl pro 31.1 30 0.00064 30.4 1.6 21 293-313 29-50 (125)
63 TIGR03698 clan_AA_DTGF clan AA 23.3 82 0.0018 26.7 3.0 66 93-174 2-73 (107)
No 1
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=6e-65 Score=542.97 Aligned_cols=359 Identities=36% Similarity=0.685 Sum_probs=303.8
Q ss_pred ceEEEeeeeecchhhhHHhhc---ccccc---ccc--cc-CCCCCceEEeceecCCceEEEEEEecCCCCeEEEEEcCCC
Q 010195 42 GLLRIQLKKRQLGINTINAAR---LITKN---EVH--NR-FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGS 112 (515)
Q Consensus 42 ~~~~ipl~~~~~~~~~~~~~~---~~~~~---~~~--~~-~~~~~~~~~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGS 112 (515)
+++|+||+|.++.++...+.+ +..+. +.. .+ ........+||.|+.|.+|+++|+||||||+|+|++||||
T Consensus 63 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGS 142 (482)
T PTZ00165 63 PAHKVELHRFALLKKKRKKNSEKGYISRVLTKHKYLETKDPNGLQYLQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGS 142 (482)
T ss_pred heEEeeeEEcchHHHhhhhHHHHHhhhhhhhccccccccccccccccceecccccCCeEEEEEEeCCCCceEEEEEeCCC
Confidence 478999999876654332221 11010 000 00 0011457899999999999999999999999999999999
Q ss_pred CCeeEeCCCCCCCccccCCCCCCCCCCCceee--cCc---eEEEEecceeEEEEEEEeeeccceeeeccceEEEEEeeCC
Q 010195 113 SNLWVPSSKCLFSISCYLHSRYRARLSRTYTK--IGV---PCKIHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL 187 (515)
Q Consensus 113 s~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~--~~~---~~~i~Yg~gs~~G~~~~D~v~lg~~~v~~~~fg~~~~~~~ 187 (515)
+++||++..|. ...|..++.|||++|+||+. .+. .+.++||+|++.|.+++|+|++|+..++++.||+++...+
T Consensus 143 S~lWVps~~C~-~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YGsGs~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~ 221 (482)
T PTZ00165 143 SNLWIPSKECK-SGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYGTGECVLALGKDTVKIGGLKVKHQSIGLAIEESL 221 (482)
T ss_pred CCEEEEchhcC-cccccccCCCCccccCCcEecCCCCccceEEEEeCCCcEEEEEEEEEEEECCEEEccEEEEEEEeccc
Confidence 99999999997 66899999999999999998 655 6789999999999999999999999999999999998766
Q ss_pred ccccccccceeeeccCCccc---CCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeCccCCCCc--ccceeEE
Q 010195 188 LPFLALQFDGILGLGFRDIA---AGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGFDWRHF--RGSHIYV 262 (515)
Q Consensus 188 ~~~~~~~~dGIlGLg~~~~s---~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~D~~~~--~g~l~~~ 262 (515)
..|....+|||||||++.++ ..+..|++++|++||+|++++||+||.++.+ .+|+|+|||+|+.++ .|++.|+
T Consensus 222 ~~f~~~~~DGILGLg~~~~s~~s~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~--~~G~l~fGGiD~~~~~~~g~i~~~ 299 (482)
T PTZ00165 222 HPFADLPFDGLVGLGFPDKDFKESKKALPIVDNIKKQNLLKRNIFSFYMSKDLN--QPGSISFGSADPKYTLEGHKIWWF 299 (482)
T ss_pred cccccccccceeecCCCcccccccCCCCCHHHHHHHcCCcccceEEEEeccCCC--CCCEEEeCCcCHHHcCCCCceEEE
Confidence 56777789999999999873 3447889999999999999999999986532 379999999999776 5789999
Q ss_pred ecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccccccccceeeeecchhhhhhhh
Q 010195 263 PITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLI 342 (515)
Q Consensus 263 p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~ 342 (515)
|+.+.++|+|++++|.|+++.+..+...+.+++||||+++++|++++++|.+++++.
T Consensus 300 Pv~~~~yW~i~l~~i~vgg~~~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~----------------------- 356 (482)
T PTZ00165 300 PVISTDYWEIEVVDILIDGKSLGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPLE----------------------- 356 (482)
T ss_pred EccccceEEEEeCeEEECCEEeeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCCc-----------------------
Confidence 999999999999999999988776667889999999999999999999998887543
Q ss_pred cCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhcc
Q 010195 343 SGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEV 422 (515)
Q Consensus 343 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~ 422 (515)
T Consensus 357 -------------------------------------------------------------------------------- 356 (482)
T PTZ00165 357 -------------------------------------------------------------------------------- 356 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCceEEcCCCCCCCceEEEEECCE-----EEEeCcccceEeec--cCccceEEEeEEeccCCCCCCCcEeecHHhh
Q 010195 423 LPNPMGKSFINCDDIASMPYVSFTIGNR-----SFPLSPEQYIFKIE--EGHSTICISGFIALDVPPPQGPLWVLGDMFL 495 (515)
Q Consensus 423 ~~~~~g~~~~~C~~~~~~P~l~f~fgg~-----~~~i~p~~yi~~~~--~~~~~~C~~~~~~~~~~~~~~~~~ILG~~FL 495 (515)
.+|+..+.+|+|+|+|+|. .+.|+|++|+++.. ......|+++|...+.+.+.++.||||++||
T Consensus 357 ---------~~C~~~~~lP~itf~f~g~~g~~v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Fl 427 (482)
T PTZ00165 357 ---------EDCSNKDSLPRISFVLEDVNGRKIKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFI 427 (482)
T ss_pred ---------ccccccccCCceEEEECCCCCceEEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhh
Confidence 2688777899999999864 89999999999742 3345689999999887666678999999999
Q ss_pred ccEEEEEECCCCeEEEEecC
Q 010195 496 RAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 496 r~~y~vfD~~~~rIGfA~a~ 515 (515)
|+||+|||.+|+|||||+++
T Consensus 428 r~yy~VFD~~n~rIGfA~a~ 447 (482)
T PTZ00165 428 RKYYSIFDRDHMMVGLVPAK 447 (482)
T ss_pred eeEEEEEeCCCCEEEEEeec
Confidence 99999999999999999985
No 2
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=2.3e-62 Score=503.03 Aligned_cols=324 Identities=48% Similarity=0.960 Sum_probs=286.7
Q ss_pred ecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCC-CccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEE
Q 010195 85 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFS 163 (515)
Q Consensus 85 ~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~-~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~ 163 (515)
|+.|.+|+++|.||||||++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|++.|.++
T Consensus 1 ~~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G~~~ 80 (325)
T cd05490 1 NYMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGSLSGYLS 80 (325)
T ss_pred CCcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcEEEEEEe
Confidence 4678999999999999999999999999999999999963 247888899999999999999999999999999999999
Q ss_pred EeeeccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCcc
Q 010195 164 QDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 243 (515)
Q Consensus 164 ~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G 243 (515)
+|+|+||+..++++.||+++...+..+....++||||||++..+....+|++++|++||.|++++||+||+++++....|
T Consensus 81 ~D~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G 160 (325)
T cd05490 81 QDTVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIMAQKLVEQNVFSFYLNRDPDAQPGG 160 (325)
T ss_pred eeEEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCCCC
Confidence 99999999999999999998876544555678999999999888777889999999999999999999998754334579
Q ss_pred EEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccccc
Q 010195 244 EIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVS 323 (515)
Q Consensus 244 ~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~ 323 (515)
+|+|||+|++++.|++.|+|+.++.+|.|++++|.|++... .+..+..++|||||+++++|.+++++|.+++++.
T Consensus 161 ~l~~Gg~d~~~~~g~l~~~~~~~~~~w~v~l~~i~vg~~~~-~~~~~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~---- 235 (325)
T cd05490 161 ELMLGGTDPKYYTGDLHYVNVTRKAYWQIHMDQVDVGSGLT-LCKGGCEAIVDTGTSLITGPVEEVRALQKAIGAV---- 235 (325)
T ss_pred EEEECccCHHHcCCceEEEEcCcceEEEEEeeEEEECCeee-ecCCCCEEEECCCCccccCCHHHHHHHHHHhCCc----
Confidence 99999999999999999999998899999999999988643 3445678999999999999999999999888543
Q ss_pred cccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHH
Q 010195 324 MQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQL 403 (515)
Q Consensus 324 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (515)
T Consensus 236 -------------------------------------------------------------------------------- 235 (325)
T cd05490 236 -------------------------------------------------------------------------------- 235 (325)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCCCC
Q 010195 404 KQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPP 483 (515)
Q Consensus 404 ~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~ 483 (515)
+...+.|.++|+....+|+|+|+|+|+.++|+|++|+++........|+++|+..+.++.
T Consensus 236 --------------------~~~~~~~~~~C~~~~~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~ 295 (325)
T cd05490 236 --------------------PLIQGEYMIDCEKIPTLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLSGFMGLDIPPP 295 (325)
T ss_pred --------------------cccCCCEEecccccccCCCEEEEECCEEEEEChHHeEEeccCCCCCEEeeEEEECCCCCC
Confidence 112456889999888899999999999999999999997654445689999988776555
Q ss_pred CCCcEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 484 QGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 484 ~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
.++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 296 AGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred CCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 566899999999999999999999999996
No 3
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.4e-62 Score=502.88 Aligned_cols=317 Identities=64% Similarity=1.233 Sum_probs=284.9
Q ss_pred EeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEE
Q 010195 81 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 160 (515)
Q Consensus 81 ~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G 160 (515)
|+|.|+.|.+|+++|+||||||+++|++||||+++||++..|.....|..++.|+|++|+|++..+..+.+.|++|++.|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~~~G 80 (317)
T cd06098 1 VALKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGSISG 80 (317)
T ss_pred CcccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCceEEE
Confidence 57899999999999999999999999999999999999999964458999999999999999999999999999999999
Q ss_pred EEEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCC
Q 010195 161 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 240 (515)
Q Consensus 161 ~~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 240 (515)
.+++|+|++|+.+++++.||+++...+..+....++||||||++..+..+..+++.+|++||+|++++||+||++.++..
T Consensus 81 ~~~~D~v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~ 160 (317)
T cd06098 81 FFSQDSVTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMVEQGLVKEPVFSFWLNRNPDEE 160 (317)
T ss_pred EEEeeEEEECCEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHHhcCCCCCCEEEEEEecCCCCC
Confidence 99999999999999999999998876655666788999999999888777788999999999999999999998754334
Q ss_pred CccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCcc
Q 010195 241 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 320 (515)
Q Consensus 241 ~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~ 320 (515)
..|+|+|||+|+++|.|++.|+|+...++|.|+++++.|+++.+..+.....++|||||+++++|++++++|.
T Consensus 161 ~~G~l~fGg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~------- 233 (317)
T cd06098 161 EGGELVFGGVDPKHFKGEHTYVPVTRKGYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN------- 233 (317)
T ss_pred CCcEEEECccChhhcccceEEEecCcCcEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh-------
Confidence 5899999999999999999999999889999999999999998776666788999999999999998765431
Q ss_pred ccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHH
Q 010195 321 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 400 (515)
Q Consensus 321 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
T Consensus 234 -------------------------------------------------------------------------------- 233 (317)
T cd06098 234 -------------------------------------------------------------------------------- 233 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccC
Q 010195 401 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 480 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~ 480 (515)
+.++|+....+|+|+|+|+|+.++|+|++|+++..++....|+++|+..+.
T Consensus 234 -----------------------------~~~~C~~~~~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~~C~~~~~~~~~ 284 (317)
T cd06098 234 -----------------------------SAVDCNSLSSMPNVSFTIGGKTFELTPEQYILKVGEGAAAQCISGFTALDV 284 (317)
T ss_pred -----------------------------ccCCccccccCCcEEEEECCEEEEEChHHeEEeecCCCCCEEeceEEECCC
Confidence 345888777899999999999999999999997765555689999988775
Q ss_pred CCCCCCcEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 481 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 481 ~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
....++.||||++|||++|+|||++|+|||||+
T Consensus 285 ~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 285 PPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred CCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 544556899999999999999999999999995
No 4
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=7.3e-62 Score=497.40 Aligned_cols=316 Identities=43% Similarity=0.864 Sum_probs=282.0
Q ss_pred EEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEeeeccc
Q 010195 91 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIG 170 (515)
Q Consensus 91 Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~lg 170 (515)
|+++|+||||||+++|+|||||+++||++..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.+++|+|+++
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~-~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~~~G~~~~D~v~ig 79 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCT-SQACTKHNRFQPSESSTYVSNGEAFSIQYGTGSLTGIIGIDQVTVE 79 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCC-CcccCccceECCCCCcccccCCcEEEEEeCCcEEEEEeeecEEEEC
Confidence 799999999999999999999999999999997 5689999999999999999999999999999999999999999999
Q ss_pred eeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeCcc
Q 010195 171 DMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFGGF 250 (515)
Q Consensus 171 ~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fGg~ 250 (515)
+..++++.||++....+..|....++||||||++..+.....|++++|++||+|++++||+||+++++....|+|+|||+
T Consensus 80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~ 159 (316)
T cd05486 80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGF 159 (316)
T ss_pred CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEccc
Confidence 99999999999887665456666789999999998887677889999999999999999999987644445799999999
Q ss_pred CCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccccccccceee
Q 010195 251 DWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVV 330 (515)
Q Consensus 251 D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~ 330 (515)
|+++|.|++.|+|+.+.++|.|.+++|.|+++.+. +..+..++|||||+++++|++++++|.+.+++.
T Consensus 160 d~~~~~g~l~~~pi~~~~~w~v~l~~i~v~g~~~~-~~~~~~aiiDTGTs~~~lP~~~~~~l~~~~~~~----------- 227 (316)
T cd05486 160 DTSRFSGQLNWVPVTVQGYWQIQLDNIQVGGTVIF-CSDGCQAIVDTGTSLITGPSGDIKQLQNYIGAT----------- 227 (316)
T ss_pred CHHHcccceEEEECCCceEEEEEeeEEEEecceEe-cCCCCEEEECCCcchhhcCHHHHHHHHHHhCCc-----------
Confidence 99999999999999999999999999999998764 345678999999999999999999998887543
Q ss_pred eecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHH
Q 010195 331 FEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKE 410 (515)
Q Consensus 331 ~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (515)
T Consensus 228 -------------------------------------------------------------------------------- 227 (316)
T cd05486 228 -------------------------------------------------------------------------------- 227 (316)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcEee
Q 010195 411 AIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVL 490 (515)
Q Consensus 411 ~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 490 (515)
...+.|.++|+....+|+|+|+|+|+.++|+|++|++.........|+++|+..+..+..++.|||
T Consensus 228 --------------~~~~~~~~~C~~~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~IL 293 (316)
T cd05486 228 --------------ATDGEYGVDCSTLSLMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLDIPPPAGPLWIL 293 (316)
T ss_pred --------------ccCCcEEEeccccccCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECCCCCCCCCeEEE
Confidence 113568899998788999999999999999999999875333456899999887754445568999
Q ss_pred cHHhhccEEEEEECCCCeEEEEe
Q 010195 491 GDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 491 G~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
|++|||++|+|||.+++|||||+
T Consensus 294 Gd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 294 GDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred chHHhcceEEEEeCCCCEeeccC
Confidence 99999999999999999999996
No 5
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2e-61 Score=496.33 Aligned_cols=325 Identities=44% Similarity=0.892 Sum_probs=288.6
Q ss_pred ceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCC-CccccCCCCCCCCCCCceeecCceEEEEecceeEEEE
Q 010195 83 LNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGF 161 (515)
Q Consensus 83 l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~-~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~ 161 (515)
|.|+.|..|+++|+||||+|+++|++||||+++||++..|.. ...|..++.|+|++|+|++..++.+.+.|++|+++|.
T Consensus 1 ~~~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g~~~G~ 80 (326)
T cd05487 1 LTNYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASGTVKGF 80 (326)
T ss_pred CcccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCceEEEE
Confidence 568889999999999999999999999999999999999963 1478889999999999999999999999999999999
Q ss_pred EEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010195 162 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 241 (515)
Q Consensus 162 ~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 241 (515)
+++|+|++|+..+. +.||++.......+....+|||||||++..+..+..|++++|++||.|++++||+||++.++...
T Consensus 81 ~~~D~v~~g~~~~~-~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~qg~i~~~~FS~~L~~~~~~~~ 159 (326)
T cd05487 81 LSQDIVTVGGIPVT-QMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQGVLKEDVFSVYYSRDSSHSL 159 (326)
T ss_pred EeeeEEEECCEEee-EEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhcCCCCCCEEEEEEeCCCCCCC
Confidence 99999999998885 78999987654445556789999999988777677899999999999999999999987643345
Q ss_pred ccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccc
Q 010195 242 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 321 (515)
Q Consensus 242 ~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~ 321 (515)
.|+|+|||+|+++|.|+++|+|+...++|+|+++++.|+++.+. +..+..++|||||+++++|.++++++.+++++.
T Consensus 160 ~G~l~fGg~d~~~y~g~l~~~~~~~~~~w~v~l~~i~vg~~~~~-~~~~~~aiiDSGts~~~lP~~~~~~l~~~~~~~-- 236 (326)
T cd05487 160 GGEIVLGGSDPQHYQGDFHYINTSKTGFWQIQMKGVSVGSSTLL-CEDGCTAVVDTGASFISGPTSSISKLMEALGAK-- 236 (326)
T ss_pred CcEEEECCcChhhccCceEEEECCcCceEEEEecEEEECCEEEe-cCCCCEEEECCCccchhCcHHHHHHHHHHhCCc--
Confidence 79999999999999999999999999999999999999998764 345678999999999999999999999988654
Q ss_pred cccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHH
Q 010195 322 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 401 (515)
Q Consensus 322 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
T Consensus 237 -------------------------------------------------------------------------------- 236 (326)
T cd05487 237 -------------------------------------------------------------------------------- 236 (326)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCC
Q 010195 402 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 481 (515)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~ 481 (515)
...+.|.+||+....+|+|+|+|++.+++|++++|+++..+.....|+++|+..+.+
T Consensus 237 -----------------------~~~~~y~~~C~~~~~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C~~~~~~~~~~ 293 (326)
T cd05487 237 -----------------------ERLGDYVVKCNEVPTLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLCTVAFHAMDIP 293 (326)
T ss_pred -----------------------ccCCCEEEeccccCCCCCEEEEECCEEEEeCHHHhEEeccCCCCCEEEEEEEeCCCC
Confidence 013568999998888999999999999999999999986655567899999987755
Q ss_pred CCCCCcEeecHHhhccEEEEEECCCCeEEEEec
Q 010195 482 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 482 ~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
++.++.||||++|||++|+|||++++|||||+|
T Consensus 294 ~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 294 PPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred CCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 445568999999999999999999999999986
No 6
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=9.8e-61 Score=491.77 Aligned_cols=327 Identities=48% Similarity=0.966 Sum_probs=290.6
Q ss_pred EeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCC-CccccCCCCCCCCCCCceeecCceEEEEecceeEE
Q 010195 81 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLF-SISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQIS 159 (515)
Q Consensus 81 ~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~-~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~ 159 (515)
.+|.|+.|.+|+++|+||||+|++.|++||||+++||+|..|.. ...|..++.|+|++|+|++..++.|.+.|++|+++
T Consensus 2 ~~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~~~ 81 (329)
T cd05485 2 EPLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGSLS 81 (329)
T ss_pred ccceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCceEE
Confidence 47899999999999999999999999999999999999999963 23688888999999999999999999999999999
Q ss_pred EEEEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCC
Q 010195 160 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNS 239 (515)
Q Consensus 160 G~~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~ 239 (515)
|.+++|++++|+..++++.||++....+..+.....+||||||++..+.....|++.+|++||+|++++||+||.+.++.
T Consensus 82 G~~~~D~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l~~qg~i~~~~FS~~l~~~~~~ 161 (329)
T cd05485 82 GFLSTDTVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNMVNQKLVDAPVFSFYLNRDPSA 161 (329)
T ss_pred EEEecCcEEECCEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHHHhCCCCCCCEEEEEecCCCCC
Confidence 99999999999999999999999877654455667899999999988776778899999999999999999999876444
Q ss_pred CCccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCc
Q 010195 240 EVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 319 (515)
Q Consensus 240 ~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~ 319 (515)
...|+|+|||+|++++.|+++|+|+.+.++|.|.++++.++++.+ +..+..++|||||+++++|++++++|.+++++.
T Consensus 162 ~~~G~l~fGg~d~~~~~g~l~~~p~~~~~~~~v~~~~i~v~~~~~--~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~ 239 (329)
T cd05485 162 KEGGELILGGSDPKHYTGNFTYLPVTRKGYWQFKMDSVSVGEGEF--CSGGCQAIADTGTSLIAGPVDEIEKLNNAIGAK 239 (329)
T ss_pred CCCcEEEEcccCHHHcccceEEEEcCCceEEEEEeeEEEECCeee--cCCCcEEEEccCCcceeCCHHHHHHHHHHhCCc
Confidence 457999999999999999999999999999999999999999875 345678999999999999999999999888654
Q ss_pred cccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHH
Q 010195 320 GIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWI 399 (515)
Q Consensus 320 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (515)
.
T Consensus 240 ~------------------------------------------------------------------------------- 240 (329)
T cd05485 240 P------------------------------------------------------------------------------- 240 (329)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEecc
Q 010195 400 QMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALD 479 (515)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~ 479 (515)
...+.|.++|+....+|+|+|+|+|+++.|+|++|+++........|+++|...+
T Consensus 241 -------------------------~~~~~~~~~C~~~~~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~~C~~~~~~~~ 295 (329)
T cd05485 241 -------------------------IIGGEYMVNCSAIPSLPDITFVLGGKSFSLTGKDYVLKVTQMGQTICLSGFMGID 295 (329)
T ss_pred -------------------------ccCCcEEEeccccccCCcEEEEECCEEeEEChHHeEEEecCCCCCEEeeeEEECc
Confidence 1135688999987789999999999999999999999876555578999998776
Q ss_pred CCCCCCCcEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 480 VPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 480 ~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
.++..++.||||++|||++|+|||++++|||||+
T Consensus 296 ~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 296 IPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred CCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 5544556899999999999999999999999985
No 7
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=1.9e-60 Score=487.17 Aligned_cols=316 Identities=45% Similarity=0.832 Sum_probs=282.5
Q ss_pred eceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEE
Q 010195 82 YLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGF 161 (515)
Q Consensus 82 ~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~ 161 (515)
||.|+.+.+|+++|.||||||++.|++||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++|++.|.
T Consensus 2 ~l~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~-~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs~~G~ 80 (317)
T cd05478 2 PLTNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCS-SQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGSMTGI 80 (317)
T ss_pred ccccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCC-cccccccCcCCCCCCcceeeCCcEEEEEECCceEEEE
Confidence 789999999999999999999999999999999999999997 5679889999999999999999999999999999999
Q ss_pred EEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010195 162 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 241 (515)
Q Consensus 162 ~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 241 (515)
+++|+|++|+..++++.||++....+..+.....+||||||++..+..+..|++++|++||+|++++||+||.+.. ..
T Consensus 81 ~~~D~v~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~--~~ 158 (317)
T cd05478 81 LGYDTVQVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGLVSQDLFSVYLSSNG--QQ 158 (317)
T ss_pred EeeeEEEECCEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCCCCCCEEEEEeCCCC--CC
Confidence 9999999999999999999998765533334467999999999887767788999999999999999999998863 23
Q ss_pred ccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccc
Q 010195 242 GGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGI 321 (515)
Q Consensus 242 ~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~ 321 (515)
+|+|+|||+|+++|.|++.|+|+..+.+|.|.++++.|+++.+. ...+..++|||||+++++|++++++|.+++++..
T Consensus 159 ~g~l~~Gg~d~~~~~g~l~~~p~~~~~~w~v~l~~v~v~g~~~~-~~~~~~~iiDTGts~~~lp~~~~~~l~~~~~~~~- 236 (317)
T cd05478 159 GSVVTFGGIDPSYYTGSLNWVPVTAETYWQITVDSVTINGQVVA-CSGGCQAIVDTGTSLLVGPSSDIANIQSDIGASQ- 236 (317)
T ss_pred CeEEEEcccCHHHccCceEEEECCCCcEEEEEeeEEEECCEEEc-cCCCCEEEECCCchhhhCCHHHHHHHHHHhCCcc-
Confidence 79999999999999999999999999999999999999999875 3456789999999999999999999999886540
Q ss_pred cccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHH
Q 010195 322 VSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQM 401 (515)
Q Consensus 322 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (515)
T Consensus 237 -------------------------------------------------------------------------------- 236 (317)
T cd05478 237 -------------------------------------------------------------------------------- 236 (317)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCC
Q 010195 402 QLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVP 481 (515)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~ 481 (515)
...+.|.+||+....+|.|+|+|+|+.++|||++|+.+. ...|++.|+..+
T Consensus 237 -----------------------~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i~~~~y~~~~----~~~C~~~~~~~~-- 287 (317)
T cd05478 237 -----------------------NQNGEMVVNCSSISSMPDVVFTINGVQYPLPPSAYILQD----QGSCTSGFQSMG-- 287 (317)
T ss_pred -----------------------ccCCcEEeCCcCcccCCcEEEEECCEEEEECHHHheecC----CCEEeEEEEeCC--
Confidence 124568999998888999999999999999999999864 358999887643
Q ss_pred CCCCCcEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 482 PPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 482 ~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
..+.||||++|||++|+|||++|+|||||+
T Consensus 288 --~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 288 --LGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred --CCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 235799999999999999999999999996
No 8
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=6.2e-60 Score=484.03 Aligned_cols=320 Identities=43% Similarity=0.826 Sum_probs=285.1
Q ss_pred EeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEE
Q 010195 81 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISG 160 (515)
Q Consensus 81 ~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G 160 (515)
+||.|+.+.+|+++|+||||+|++.|++||||+++||+|..|. ...|..++.|+|++|+|++..++.+.+.|++|+++|
T Consensus 1 ~~l~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~-~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~~~G 79 (320)
T cd05488 1 VPLTNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCG-SIACFLHSKYDSSASSTYKANGTEFKIQYGSGSLEG 79 (320)
T ss_pred CcccccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCC-CcccCCcceECCCCCcceeeCCCEEEEEECCceEEE
Confidence 5899999999999999999999999999999999999999997 568988899999999999999999999999999999
Q ss_pred EEEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCC
Q 010195 161 FFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSE 240 (515)
Q Consensus 161 ~~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~ 240 (515)
.+++|++++++..++++.||++....+..+.....+||||||++..+.....+.+.+|++||.|++++||+||++.. .
T Consensus 80 ~~~~D~v~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS~~L~~~~--~ 157 (320)
T cd05488 80 FVSQDTLSIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGLLDEPVFSFYLGSSE--E 157 (320)
T ss_pred EEEEeEEEECCEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCCCCCCEEEEEecCCC--C
Confidence 99999999999999999999998766544555678999999999887766778889999999999999999999753 2
Q ss_pred CccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCcc
Q 010195 241 VGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 320 (515)
Q Consensus 241 ~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~ 320 (515)
..|+|+|||+|++++.|++.|+|+...++|.|+++++.||++.+.. .+..++|||||+++++|+++++.|.+++++..
T Consensus 158 ~~G~l~fGg~d~~~~~g~l~~~p~~~~~~w~v~l~~i~vg~~~~~~--~~~~~ivDSGtt~~~lp~~~~~~l~~~~~~~~ 235 (320)
T cd05488 158 DGGEATFGGIDESRFTGKITWLPVRRKAYWEVELEKIGLGDEELEL--ENTGAAIDTGTSLIALPSDLAEMLNAEIGAKK 235 (320)
T ss_pred CCcEEEECCcCHHHcCCceEEEeCCcCcEEEEEeCeEEECCEEecc--CCCeEEEcCCcccccCCHHHHHHHHHHhCCcc
Confidence 3799999999999999999999999889999999999999987643 45679999999999999999999998886540
Q ss_pred ccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHH
Q 010195 321 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 400 (515)
Q Consensus 321 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
T Consensus 236 -------------------------------------------------------------------------------- 235 (320)
T cd05488 236 -------------------------------------------------------------------------------- 235 (320)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccC
Q 010195 401 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDV 480 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~ 480 (515)
...+.|.+||+....+|+|+|+|+|+++.|||++|+++. .+.|++.+...+.
T Consensus 236 ------------------------~~~~~~~~~C~~~~~~P~i~f~f~g~~~~i~~~~y~~~~----~g~C~~~~~~~~~ 287 (320)
T cd05488 236 ------------------------SWNGQYTVDCSKVDSLPDLTFNFDGYNFTLGPFDYTLEV----SGSCISAFTGMDF 287 (320)
T ss_pred ------------------------ccCCcEEeeccccccCCCEEEEECCEEEEECHHHheecC----CCeEEEEEEECcC
Confidence 124568899998888999999999999999999999853 2479999987665
Q ss_pred CCCCCCcEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 481 PPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 481 ~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
+...++.||||++|||++|+|||++++|||||+
T Consensus 288 ~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 288 PEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 433456899999999999999999999999995
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1e-59 Score=481.94 Aligned_cols=317 Identities=43% Similarity=0.851 Sum_probs=282.0
Q ss_pred CceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEeee
Q 010195 88 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNV 167 (515)
Q Consensus 88 ~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v 167 (515)
|..|+++|+||||||++.|++||||+++||++..|. ...|..++.|||++|+|++..++.|++.|++|++.|.+++|++
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~-~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs~~G~~~~D~i 79 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQ-SQACTNHTKFNPSQSSTYSTNGETFSLQYGSGSLTGIFGYDTV 79 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCC-CccccccCCCCcccCCCceECCcEEEEEECCcEEEEEEEeeEE
Confidence 568999999999999999999999999999999997 5689989999999999999999999999999999999999999
Q ss_pred ccceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEe
Q 010195 168 KIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 247 (515)
Q Consensus 168 ~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 247 (515)
++|+.+++++.|||+....+..+.....+||||||++..+....++++++|+++|.|++++||+||++.. ....|+|+|
T Consensus 80 ~~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i~~~~FS~~L~~~~-~~~~g~l~f 158 (318)
T cd05477 80 TVQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLLQAPIFSFYLSGQQ-GQQGGELVF 158 (318)
T ss_pred EECCEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCcCCCEEEEEEcCCC-CCCCCEEEE
Confidence 9999999999999999765544445567999999999888777789999999999999999999998752 234799999
Q ss_pred CccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccccccccc
Q 010195 248 GGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCK 327 (515)
Q Consensus 248 Gg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~ 327 (515)
||+|++++.|++.|+|+...++|.|.++++.|++.....+..+..++|||||+++++|++++++|.+.+++.
T Consensus 159 Gg~d~~~~~g~l~~~pv~~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~-------- 230 (318)
T cd05477 159 GGVDNNLYTGQIYWTPVTSETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQ-------- 230 (318)
T ss_pred cccCHHHcCCceEEEecCCceEEEEEeeEEEECCEEecccCCCceeeECCCCccEECCHHHHHHHHHHhCCc--------
Confidence 999999999999999999999999999999999998765556778999999999999999999999988654
Q ss_pred eeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhh
Q 010195 328 TVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQK 407 (515)
Q Consensus 328 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (515)
T Consensus 231 -------------------------------------------------------------------------------- 230 (318)
T cd05477 231 -------------------------------------------------------------------------------- 230 (318)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCCCCCC-C
Q 010195 408 TKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQG-P 486 (515)
Q Consensus 408 ~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~-~ 486 (515)
....+.|.+||+....+|.|+|+|+|+++.|+|++|+... ...|+++|.....+...+ +
T Consensus 231 ----------------~~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v~~~~y~~~~----~~~C~~~i~~~~~~~~~~~~ 290 (318)
T cd05477 231 ----------------QDQYGQYVVNCNNIQNLPTLTFTINGVSFPLPPSAYILQN----NGYCTVGIEPTYLPSQNGQP 290 (318)
T ss_pred ----------------cccCCCEEEeCCccccCCcEEEEECCEEEEECHHHeEecC----CCeEEEEEEecccCCCCCCc
Confidence 0124678999998888999999999999999999999863 358999887654333222 4
Q ss_pred cEeecHHhhccEEEEEECCCCeEEEEec
Q 010195 487 LWVLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 487 ~~ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
.||||++|||++|++||++++|||||+|
T Consensus 291 ~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 291 LWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred eEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 7999999999999999999999999986
No 10
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7.6e-59 Score=492.53 Aligned_cols=327 Identities=33% Similarity=0.642 Sum_probs=284.1
Q ss_pred CCCCCceEEeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEE
Q 010195 73 FNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIH 152 (515)
Q Consensus 73 ~~~~~~~~~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~ 152 (515)
+..+....+||.|+.+.+|+++|+||||||++.|++||||+++||+|..|. ...|..++.|||++|+||+..++.+.+.
T Consensus 122 ~~~~~~~~v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~-~~~C~~~~~yd~s~SsT~~~~~~~f~i~ 200 (453)
T PTZ00147 122 YLGSEFDNVELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCT-TEGCETKNLYDSSKSKTYEKDGTKVEMN 200 (453)
T ss_pred cccCCCCeeeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCC-cccccCCCccCCccCcceEECCCEEEEE
Confidence 445678899999999999999999999999999999999999999999997 5689999999999999999999999999
Q ss_pred ecceeEEEEEEEeeeccceeeeccceEEEEEeeCCc--cccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEE
Q 010195 153 YGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGLL--PFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFS 230 (515)
Q Consensus 153 Yg~gs~~G~~~~D~v~lg~~~v~~~~fg~~~~~~~~--~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FS 230 (515)
|++|+++|.+++|+|++|+.+++ ..|+++....+. .+....+|||||||++..+.....|++.+|++||.|++++||
T Consensus 201 Yg~GsvsG~~~~DtVtiG~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p~~~~L~~qg~I~~~vFS 279 (453)
T PTZ00147 201 YVSGTVSGFFSKDLVTIGNLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDPYVVELKNQNKIEQAVFT 279 (453)
T ss_pred eCCCCEEEEEEEEEEEECCEEEE-EEEEEEEeccCcccccccccccceecccCCccccccCCCHHHHHHHcCCCCccEEE
Confidence 99999999999999999999998 578888765442 234557899999999988877788999999999999999999
Q ss_pred EEecCCCCCCCccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHH
Q 010195 231 LWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVA 310 (515)
Q Consensus 231 l~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~ 310 (515)
+||++.+ ...|.|+|||+|+++|.|++.|+|+.+..+|+|.++ +.+++.. .....++|||||+++++|+++++
T Consensus 280 ~~L~~~~--~~~G~L~fGGiD~~ky~G~l~y~pl~~~~~W~V~l~-~~vg~~~----~~~~~aIiDSGTsli~lP~~~~~ 352 (453)
T PTZ00147 280 FYLPPED--KHKGYLTIGGIEERFYEGPLTYEKLNHDLYWQVDLD-VHFGNVS----SEKANVIVDSGTSVITVPTEFLN 352 (453)
T ss_pred EEecCCC--CCCeEEEECCcChhhcCCceEEEEcCCCceEEEEEE-EEECCEe----cCceeEEECCCCchhcCCHHHHH
Confidence 9998643 237999999999999999999999998899999998 5776643 24578999999999999999999
Q ss_pred HHHHHhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccch
Q 010195 311 QINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCA 390 (515)
Q Consensus 311 ~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (515)
++.+++++..
T Consensus 353 ai~~~l~~~~---------------------------------------------------------------------- 362 (453)
T PTZ00147 353 KFVESLDVFK---------------------------------------------------------------------- 362 (453)
T ss_pred HHHHHhCCee----------------------------------------------------------------------
Confidence 9999886530
Q ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccce
Q 010195 391 FCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTI 470 (515)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~ 470 (515)
. ...+.|.++|+. ..+|+|+|.|+|..++|+|++|+....+.....
T Consensus 363 --------------------------------~-~~~~~y~~~C~~-~~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~ 408 (453)
T PTZ00147 363 --------------------------------V-PFLPLYVTTCNN-TKLPTLEFRSPNKVYTLEPEYYLQPIEDIGSAL 408 (453)
T ss_pred --------------------------------c-CCCCeEEEeCCC-CCCCeEEEEECCEEEEECHHHheeccccCCCcE
Confidence 0 113457889996 579999999999999999999998655445568
Q ss_pred EEEeEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEecC
Q 010195 471 CISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 471 C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a~ 515 (515)
|+++|...+. ..+.||||++|||++|+|||.+++|||||+|+
T Consensus 409 C~~~i~~~~~---~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 409 CMLNIIPIDL---EKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 9998887552 23579999999999999999999999999985
No 11
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=3e-58 Score=487.14 Aligned_cols=329 Identities=31% Similarity=0.644 Sum_probs=283.2
Q ss_pred ccCCCCCceEEeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEE
Q 010195 71 NRFNHPKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK 150 (515)
Q Consensus 71 ~~~~~~~~~~~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~ 150 (515)
..+.+.....++|.|+.+.+|+++|+||||||++.|++||||+++||++..|. ...|..++.|+|++|+|++..++.+.
T Consensus 119 ~~~~~~~~~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~-~~~C~~~~~yd~s~SsT~~~~~~~~~ 197 (450)
T PTZ00013 119 QNYLGSENDVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCD-SIGCSIKNLYDSSKSKSYEKDGTKVD 197 (450)
T ss_pred ecccccCCCceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCC-ccccccCCCccCccCcccccCCcEEE
Confidence 34566788999999999999999999999999999999999999999999997 56899999999999999999999999
Q ss_pred EEecceeEEEEEEEeeeccceeeeccceEEEEEeeCC--ccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccE
Q 010195 151 IHYGSGQISGFFSQDNVKIGDMIIKDQEFVEVTKEGL--LPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKI 228 (515)
Q Consensus 151 i~Yg~gs~~G~~~~D~v~lg~~~v~~~~fg~~~~~~~--~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~ 228 (515)
+.|++|++.|.+++|+|++|+.+++ ..|+++..... ..+....+|||||||++..+.....|++++|++||.|++++
T Consensus 198 i~YG~Gsv~G~~~~Dtv~iG~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~p~~~~L~~qg~I~~~v 276 (450)
T PTZ00013 198 ITYGSGTVKGFFSKDLVTLGHLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSIDPIVVELKNQNKIDNAL 276 (450)
T ss_pred EEECCceEEEEEEEEEEEECCEEEc-cEEEEEEeccccccceecccccceecccCCccccccCCCHHHHHHhccCcCCcE
Confidence 9999999999999999999999987 57888776542 12445578999999999888777889999999999999999
Q ss_pred EEEEecCCCCCCCccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHH
Q 010195 229 FSLWLNQDPNSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTV 308 (515)
Q Consensus 229 FSl~l~~~~~~~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~ 308 (515)
||+||++.+ ...|+|+|||+|+++|.|++.|+|+....+|+|.++ +.+|.... ....+++||||+++++|+++
T Consensus 277 FS~~L~~~~--~~~G~L~fGGiD~~~y~G~L~y~pv~~~~yW~I~l~-v~~G~~~~----~~~~aIlDSGTSli~lP~~~ 349 (450)
T PTZ00013 277 FTFYLPVHD--VHAGYLTIGGIEEKFYEGNITYEKLNHDLYWQIDLD-VHFGKQTM----QKANVIVDSGTTTITAPSEF 349 (450)
T ss_pred EEEEecCCC--CCCCEEEECCcCccccccceEEEEcCcCceEEEEEE-EEECceec----cccceEECCCCccccCCHHH
Confidence 999998642 237999999999999999999999998899999998 66664432 35679999999999999999
Q ss_pred HHHHHHHhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCcccc
Q 010195 309 VAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTL 388 (515)
Q Consensus 309 ~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (515)
++++.+.+++..
T Consensus 350 ~~~i~~~l~~~~-------------------------------------------------------------------- 361 (450)
T PTZ00013 350 LNKFFANLNVIK-------------------------------------------------------------------- 361 (450)
T ss_pred HHHHHHHhCCee--------------------------------------------------------------------
Confidence 999998886540
Q ss_pred chhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCcc
Q 010195 389 CAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHS 468 (515)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~ 468 (515)
. ...+.|.++|+. ..+|+|+|.|+|.+++|+|++|+....+...
T Consensus 362 ----------------------------------~-~~~~~y~~~C~~-~~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~ 405 (450)
T PTZ00013 362 ----------------------------------V-PFLPFYVTTCDN-KEMPTLEFKSANNTYTLEPEYYMNPLLDVDD 405 (450)
T ss_pred ----------------------------------c-CCCCeEEeecCC-CCCCeEEEEECCEEEEECHHHheehhccCCC
Confidence 0 123558899985 5789999999999999999999976443334
Q ss_pred ceEEEeEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEecC
Q 010195 469 TICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 469 ~~C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a~ 515 (515)
..|++++.+.+. ..+.||||++|||++|+|||++++|||||+++
T Consensus 406 ~~C~~~i~~~~~---~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 406 TLCMITMLPVDI---DDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred CeeEEEEEECCC---CCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 689999876542 23579999999999999999999999999985
No 12
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=1.8e-55 Score=448.48 Aligned_cols=316 Identities=39% Similarity=0.737 Sum_probs=281.2
Q ss_pred eEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEeeecc
Q 010195 90 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKI 169 (515)
Q Consensus 90 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~l 169 (515)
+|+++|.||||+|+++|++||||+++||++..|.....|.....|+++.|+|++..++.+.+.|++|+++|.+++|+|+|
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~~~G~~~~D~v~i 80 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGSVSGNLVSDTVSI 80 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcccccccccceEee
Confidence 59999999999999999999999999999999973336788899999999999999999999999999999999999999
Q ss_pred ceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCC-CCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeC
Q 010195 170 GDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGN-ATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 248 (515)
Q Consensus 170 g~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~-~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 248 (515)
++..+.++.||++....+..+....++||||||++..+... ..+++++|++||+|++++||++|++.. ...|.|+||
T Consensus 81 g~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i~~~~fsl~l~~~~--~~~g~l~~G 158 (317)
T PF00026_consen 81 GGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLISSNVFSLYLNPSD--SQNGSLTFG 158 (317)
T ss_dssp TTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSSSSSEEEEEEESTT--SSEEEEEES
T ss_pred eeccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccccccccceeeeecc--cccchheee
Confidence 99999999999999876555567788999999988776554 788999999999999999999999874 447999999
Q ss_pred ccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCccccccccce
Q 010195 249 GFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKT 328 (515)
Q Consensus 249 g~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~ 328 (515)
|+|+++++|+++|+|+...++|.+.+++|.+++... .......++||||++++++|.+++++|++.+++..
T Consensus 159 g~d~~~~~g~~~~~~~~~~~~w~v~~~~i~i~~~~~-~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~-------- 229 (317)
T PF00026_consen 159 GYDPSKYDGDLVWVPLVSSGYWSVPLDSISIGGESV-FSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSY-------- 229 (317)
T ss_dssp SEEGGGEESEEEEEEBSSTTTTEEEEEEEEETTEEE-EEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEE--------
T ss_pred ccccccccCceeccCccccccccccccccccccccc-ccccceeeecccccccccccchhhHHHHhhhcccc--------
Confidence 999999999999999999999999999999999932 24456789999999999999999999999997761
Q ss_pred eeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhh
Q 010195 329 VVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKT 408 (515)
Q Consensus 329 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (515)
T Consensus 230 -------------------------------------------------------------------------------- 229 (317)
T PF00026_consen 230 -------------------------------------------------------------------------------- 229 (317)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcE
Q 010195 409 KEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLW 488 (515)
Q Consensus 409 ~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ 488 (515)
..+.|.++|+....+|.|+|.|++.+++|+|++|+.+........|+..|...+. ....+.+
T Consensus 230 -----------------~~~~~~~~c~~~~~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~~-~~~~~~~ 291 (317)
T PF00026_consen 230 -----------------SDGVYSVPCNSTDSLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMDS-SDDSDDW 291 (317)
T ss_dssp -----------------ECSEEEEETTGGGGSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEESS-TTSSSEE
T ss_pred -----------------cceeEEEecccccccceEEEeeCCEEEEecchHhcccccccccceeEeeeecccc-cccCCce
Confidence 0167899999888899999999999999999999998877655689999998664 4455789
Q ss_pred eecHHhhccEEEEEECCCCeEEEEec
Q 010195 489 VLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 489 ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
|||.+|||++|++||++++|||||+|
T Consensus 292 iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 292 ILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp EEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred EecHHHhhceEEEEeCCCCEEEEecC
Confidence 99999999999999999999999997
No 13
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=7.2e-52 Score=416.14 Aligned_cols=272 Identities=29% Similarity=0.495 Sum_probs=236.9
Q ss_pred EEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceee-cCceEEEEeccee-EEEEEEEeeec
Q 010195 91 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTK-IGVPCKIHYGSGQ-ISGFFSQDNVK 168 (515)
Q Consensus 91 Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~-~~~~~~i~Yg~gs-~~G~~~~D~v~ 168 (515)
|+++|+||||||++.|++||||+++||+++.|. ...|..++.|++++|+|++. .++.+.+.|++|+ +.|.+++|+|+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~-~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G~~~~G~~~~D~v~ 79 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP-AAQQGGHKLYDPSKSSTAKLLPGATWSISYGDGSSASGIVYTDTVS 79 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC-chhhccCCcCCCccCccceecCCcEEEEEeCCCCeEEEEEEEEEEE
Confidence 789999999999999999999999999999997 34555677899999999987 4689999999997 89999999999
Q ss_pred cceeeeccceEEEEEeeCCccccccccceeeeccCCcccCC---CCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEE
Q 010195 169 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAG---NATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEI 245 (515)
Q Consensus 169 lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~---~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L 245 (515)
||+.+++++.||+++......+....++||||||++..+.. ...+++++|.+|+. +++||+||.+. ..|+|
T Consensus 80 ig~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~--~~~Fs~~l~~~----~~G~l 153 (278)
T cd06097 80 IGGVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD--APLFTADLRKA----APGFY 153 (278)
T ss_pred ECCEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc--CceEEEEecCC----CCcEE
Confidence 99999999999999887654455678899999999876542 35678999999965 79999999863 27999
Q ss_pred EeCccCCCCcccceeEEeccc-ccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCcccccc
Q 010195 246 IFGGFDWRHFRGSHIYVPITE-KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSM 324 (515)
Q Consensus 246 ~fGg~D~~~~~g~l~~~p~~~-~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~ 324 (515)
+|||+|++++.|++.|+|+.. .++|.|+++++.|+++... ...+..++|||||+++++|.+++++|.+++++..
T Consensus 154 ~fGg~D~~~~~g~l~~~pi~~~~~~w~v~l~~i~v~~~~~~-~~~~~~~iiDSGTs~~~lP~~~~~~l~~~l~g~~---- 228 (278)
T cd06097 154 TFGYIDESKYKGEISWTPVDNSSGFWQFTSTSYTVGGDAPW-SRSGFSAIADTGTTLILLPDAIVEAYYSQVPGAY---- 228 (278)
T ss_pred EEeccChHHcCCceEEEEccCCCcEEEEEEeeEEECCccee-ecCCceEEeecCCchhcCCHHHHHHHHHhCcCCc----
Confidence 999999999999999999987 7899999999999998442 3567889999999999999999999999884320
Q ss_pred ccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHh
Q 010195 325 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLK 404 (515)
Q Consensus 325 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (515)
T Consensus 229 -------------------------------------------------------------------------------- 228 (278)
T cd06097 229 -------------------------------------------------------------------------------- 228 (278)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeeccCccceEEEeEEeccCCCCC
Q 010195 405 QQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQ 484 (515)
Q Consensus 405 ~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~ 484 (515)
++...+.|.+||+. .+|+|+|+|
T Consensus 229 ------------------~~~~~~~~~~~C~~--~~P~i~f~~------------------------------------- 251 (278)
T cd06097 229 ------------------YDSEYGGWVFPCDT--TLPDLSFAV------------------------------------- 251 (278)
T ss_pred ------------------ccCCCCEEEEECCC--CCCCEEEEE-------------------------------------
Confidence 11235779999996 389999999
Q ss_pred CCcEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 485 GPLWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 485 ~~~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
.||||++|||++|+|||++|+|||||+
T Consensus 252 --~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 --FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred --EEEEcchhhCceeEEEcCCCceeeecC
Confidence 489999999999999999999999996
No 14
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=8e-51 Score=423.84 Aligned_cols=317 Identities=27% Similarity=0.452 Sum_probs=248.4
Q ss_pred ceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEEeeec
Q 010195 89 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVK 168 (515)
Q Consensus 89 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~ 168 (515)
..|+++|.||||+|+|.|+|||||+++||+|..|. ..++.|+|++|+|++..++.|++.|++|++.|.+++|+|+
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~-----~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs~~G~~~~D~v~ 76 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP-----FIHTYFHRELSSTYRDLGKGVTVPYTQGSWEGELGTDLVS 76 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc-----cccccCCchhCcCcccCCceEEEEECcceEEEEEEEEEEE
Confidence 47999999999999999999999999999998873 3467899999999999999999999999999999999999
Q ss_pred cceeeecc--ceEEEEEeeCCccccccccceeeeccCCcccCC--CCCchHHHHHHcCCCCccEEEEEecCCC-------
Q 010195 169 IGDMIIKD--QEFVEVTKEGLLPFLALQFDGILGLGFRDIAAG--NATPLWYNMVRQGHISQKIFSLWLNQDP------- 237 (515)
Q Consensus 169 lg~~~v~~--~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~--~~~~~~~~l~~qg~i~~~~FSl~l~~~~------- 237 (515)
||+..... +.|+++.......+....+|||||||++.++.. ...+++++|++|+.+ .++||+||+...
T Consensus 77 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~-~~~FS~~l~~~~~~~~~~~ 155 (364)
T cd05473 77 IPKGPNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI-PDVFSLQMCGAGLPVNGSA 155 (364)
T ss_pred ECCCCccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC-ccceEEEeccccccccccc
Confidence 98632111 224455443332222346799999999987642 467899999999997 579999986421
Q ss_pred CCCCccEEEeCccCCCCcccceeEEecccccceEEEEeeEEEcCeEeeeecC---CceEEEccCccCcccCHHHHHHHHH
Q 010195 238 NSEVGGEIIFGGFDWRHFRGSHIYVPITEKGYWQIKVGDILIENSSTGFCED---GCTAILDSGTSVLAGPTTVVAQINH 314 (515)
Q Consensus 238 ~~~~~G~L~fGg~D~~~~~g~l~~~p~~~~~~w~v~l~~i~v~~~~~~~~~~---~~~aivDSGtt~i~lP~~~~~~i~~ 314 (515)
.....|+|+|||+|++++.|++.|+|+.+..+|.|.+++|.|++..+..... ...++|||||+++++|++++++|.+
T Consensus 156 ~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~ 235 (364)
T cd05473 156 SGTVGGSMVIGGIDPSLYKGDIWYTPIREEWYYEVIILKLEVGGQSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVD 235 (364)
T ss_pred ccCCCcEEEeCCcCHhhcCCCceEEecCcceeEEEEEEEEEECCEecccccccccCccEEEeCCCcceeCCHHHHHHHHH
Confidence 1234799999999999999999999999889999999999999988754221 2469999999999999999999999
Q ss_pred HhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhH
Q 010195 315 AIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEM 394 (515)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
++++...- .
T Consensus 236 ~l~~~~~~--------------------~--------------------------------------------------- 244 (364)
T cd05473 236 AIKAASLI--------------------E--------------------------------------------------- 244 (364)
T ss_pred HHHhhccc--------------------c---------------------------------------------------
Confidence 99765100 0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhhccCC-CCCCceEEcCCCCC-----CCceEEEEECC------EEEEeCcccceEe
Q 010195 395 IVFWIQMQLKQQKTKEAIFKYADKLCEVLP-NPMGKSFINCDDIA-----SMPYVSFTIGN------RSFPLSPEQYIFK 462 (515)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~-~~~g~~~~~C~~~~-----~~P~l~f~fgg------~~~~i~p~~yi~~ 462 (515)
..+ ...+.+.++|.... .+|+|+|+|+| .++.|+|++|+..
T Consensus 245 ---------------------------~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l~p~~Y~~~ 297 (364)
T cd05473 245 ---------------------------DFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITILPQLYLRP 297 (364)
T ss_pred ---------------------------cCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEECHHHhhhh
Confidence 000 01123456786533 58999999964 4789999999986
Q ss_pred ecc-CccceEEE-eEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEecC
Q 010195 463 IEE-GHSTICIS-GFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 463 ~~~-~~~~~C~~-~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a~ 515 (515)
... +....|+. ++. ...+.||||+.|||++|+|||.+++|||||+++
T Consensus 298 ~~~~~~~~~C~~~~~~------~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~ 346 (364)
T cd05473 298 VEDHGTQLDCYKFAIS------QSTNGTVIGAVIMEGFYVVFDRANKRVGFAVST 346 (364)
T ss_pred hccCCCcceeeEEeee------cCCCceEEeeeeEcceEEEEECCCCEEeeEecc
Confidence 432 22457975 221 123469999999999999999999999999874
No 15
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-50 Score=421.90 Aligned_cols=321 Identities=39% Similarity=0.745 Sum_probs=267.7
Q ss_pred ceEEeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccC-CCC-CCCCCCCceeecCce-------
Q 010195 78 ADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYL-HSR-YRARLSRTYTKIGVP------- 148 (515)
Q Consensus 78 ~~~~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~-~~~-y~ps~SsT~~~~~~~------- 148 (515)
....++..+.+++|+++|.||||||+|.|++||||+++||+|..|.. .|.. +.. |+|++|+||+..+|.
T Consensus 34 ~~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~--~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~ 111 (398)
T KOG1339|consen 34 PLPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS--ACYSQHNPIFDPSASSTYKSVGCSSPRCKSL 111 (398)
T ss_pred ccccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc--cccccCCCccCccccccccccCCCCcccccc
Confidence 44566777788999999999999999999999999999999999962 6864 445 999999999998743
Q ss_pred -----------EEEEeccee-EEEEEEEeeeccce---eeeccceEEEEEeeCCccccc-cccceeeeccCCcccCCCCC
Q 010195 149 -----------CKIHYGSGQ-ISGFFSQDNVKIGD---MIIKDQEFVEVTKEGLLPFLA-LQFDGILGLGFRDIAAGNAT 212 (515)
Q Consensus 149 -----------~~i~Yg~gs-~~G~~~~D~v~lg~---~~v~~~~fg~~~~~~~~~~~~-~~~dGIlGLg~~~~s~~~~~ 212 (515)
|.+.|++|+ ++|.+++|+|++++ ..++++.|||+....+. +.. ..+|||||||+..++...+.
T Consensus 112 ~~~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~~~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~~~q~ 190 (398)
T KOG1339|consen 112 PQSCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTTSLPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSVPSQL 190 (398)
T ss_pred ccCcccCCcCceEEEeCCCCceeEEEEEEEEEEccccccccccEEEEeeecCccc-cccccccceEeecCCCCccceeec
Confidence 999999955 89999999999998 78888999999988764 444 67899999999998865544
Q ss_pred chHHHHHHcCCCCccEEEEEecCCCCC-CCccEEEeCccCCCCcccceeEEeccccc--ceEEEEeeEEEcCeE----ee
Q 010195 213 PLWYNMVRQGHISQKIFSLWLNQDPNS-EVGGEIIFGGFDWRHFRGSHIYVPITEKG--YWQIKVGDILIENSS----TG 285 (515)
Q Consensus 213 ~~~~~l~~qg~i~~~~FSl~l~~~~~~-~~~G~L~fGg~D~~~~~g~l~~~p~~~~~--~w~v~l~~i~v~~~~----~~ 285 (515)
+.+.++ .++||+||.+.... ...|.|+||++|+.++.+++.|+|+.... +|+|.+.+|.|+++. ..
T Consensus 191 ~~~~~~-------~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~ 263 (398)
T KOG1339|consen 191 PSFYNA-------INVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSL 263 (398)
T ss_pred ccccCC-------ceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcce
Confidence 333222 23899999987433 25899999999999999999999998877 999999999999842 22
Q ss_pred eecCCceEEEccCccCcccCHHHHHHHHHHhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCccc
Q 010195 286 FCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYM 365 (515)
Q Consensus 286 ~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~ 365 (515)
++.+...+|+||||++++||.++|++|.+++++.- +
T Consensus 264 ~~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~--------------~------------------------------ 299 (398)
T KOG1339|consen 264 FCTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEV--------------S------------------------------ 299 (398)
T ss_pred EecCCCCEEEECCcceeeccHHHHHHHHHHHHhhe--------------e------------------------------
Confidence 34446889999999999999999999999997750 0
Q ss_pred ccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCC----Cc
Q 010195 366 STGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIAS----MP 441 (515)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~----~P 441 (515)
.+...+.+.++|..... +|
T Consensus 300 ---------------------------------------------------------~~~~~~~~~~~C~~~~~~~~~~P 322 (398)
T KOG1339|consen 300 ---------------------------------------------------------VVGTDGEYFVPCFSISTSGVKLP 322 (398)
T ss_pred ---------------------------------------------------------ccccCCceeeecccCCCCcccCC
Confidence 01345668888987776 99
Q ss_pred eEEEEEC-CEEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcEeecHHhhccEEEEEECC-CCeEEEEec
Q 010195 442 YVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFG-NLQIGFAEA 514 (515)
Q Consensus 442 ~l~f~fg-g~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~-~~rIGfA~a 514 (515)
.|.|+|+ |+.|.+++++|+++..++... |.+.+...+.+ +.||||+.|+|+++++||.. ++|||||++
T Consensus 323 ~i~~~f~~g~~~~l~~~~y~~~~~~~~~~-Cl~~~~~~~~~----~~~ilG~~~~~~~~~~~D~~~~~riGfa~~ 392 (398)
T KOG1339|consen 323 DITFHFGGGAVFSLPPKNYLVEVSDGGGV-CLAFFNGMDSG----PLWILGDVFQQNYLVVFDLGENSRVGFAPA 392 (398)
T ss_pred cEEEEECCCcEEEeCccceEEEECCCCCc-eeeEEecCCCC----ceEEEchHHhCCEEEEEeCCCCCEEEeccc
Confidence 9999998 899999999999987755322 99988765421 58999999999999999999 999999985
No 16
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=7.4e-50 Score=410.53 Aligned_cols=283 Identities=30% Similarity=0.481 Sum_probs=236.5
Q ss_pred ceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCcccc--CCCCCCCCCCCceeec----------------CceEE
Q 010195 89 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKI----------------GVPCK 150 (515)
Q Consensus 89 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~--~~~~y~ps~SsT~~~~----------------~~~~~ 150 (515)
+.|+++|+||||+|++.|+|||||+++||+|..|. .|. .++.|+|++|+|++.. .|.|.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~---~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~ 78 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK---NCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYS 78 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC---CcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEE
Confidence 58999999999999999999999999999999997 565 3478999999999864 56899
Q ss_pred EEeccee-EEEEEEEeeeccceeeec-------cceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcC
Q 010195 151 IHYGSGQ-ISGFFSQDNVKIGDMIIK-------DQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 222 (515)
Q Consensus 151 i~Yg~gs-~~G~~~~D~v~lg~~~v~-------~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg 222 (515)
+.|++|+ +.|.+++|+|+||+..+. .+.|||+....+ .+.....+||||||+...+. ..+.+..|++++
T Consensus 79 i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~--~~~~~~~l~~~~ 155 (326)
T cd06096 79 ISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETN-LFLTQQATGILGLSLTKNNG--LPTPIILLFTKR 155 (326)
T ss_pred EEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccC-cccccccceEEEccCCcccc--cCchhHHHHHhc
Confidence 9999997 799999999999987653 467999987654 34556779999999987542 223455577887
Q ss_pred CCCc--cEEEEEecCCCCCCCccEEEeCccCCCCcc----------cceeEEecccccceEEEEeeEEEcCeE-eeeecC
Q 010195 223 HISQ--KIFSLWLNQDPNSEVGGEIIFGGFDWRHFR----------GSHIYVPITEKGYWQIKVGDILIENSS-TGFCED 289 (515)
Q Consensus 223 ~i~~--~~FSl~l~~~~~~~~~G~L~fGg~D~~~~~----------g~l~~~p~~~~~~w~v~l~~i~v~~~~-~~~~~~ 289 (515)
.+.. ++||+||++. .|+|+|||+|++++. +++.|+|+..+.+|.|.+++|.|++.. ......
T Consensus 156 ~~~~~~~~FS~~l~~~-----~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~~~y~v~l~~i~vg~~~~~~~~~~ 230 (326)
T cd06096 156 PKLKKDKIFSICLSED-----GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRKYYYYVKLEGLSVYGTTSNSGNTK 230 (326)
T ss_pred ccccCCceEEEEEcCC-----CeEEEECccChhhhcccccccccccCCceEEeccCCceEEEEEEEEEEcccccceeccc
Confidence 7664 9999999864 799999999999987 789999999889999999999999886 112345
Q ss_pred CceEEEccCccCcccCHHHHHHHHHHhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccce
Q 010195 290 GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGI 369 (515)
Q Consensus 290 ~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 369 (515)
...++|||||++++||++++++|.++
T Consensus 231 ~~~aivDSGTs~~~lp~~~~~~l~~~------------------------------------------------------ 256 (326)
T cd06096 231 GLGMLVDSGSTLSHFPEDLYNKINNF------------------------------------------------------ 256 (326)
T ss_pred CCCEEEeCCCCcccCCHHHHHHHHhh------------------------------------------------------
Confidence 77899999999999999999876432
Q ss_pred eeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEEC-
Q 010195 370 ETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG- 448 (515)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fg- 448 (515)
+|+|+|.|+
T Consensus 257 ----------------------------------------------------------------------~P~i~~~f~~ 266 (326)
T cd06096 257 ----------------------------------------------------------------------FPTITIIFEN 266 (326)
T ss_pred ----------------------------------------------------------------------cCcEEEEEcC
Confidence 289999997
Q ss_pred CEEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEecC
Q 010195 449 NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 449 g~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a~ 515 (515)
|++++++|++|++..... .|..++.. ..+.||||++|||++|+|||++++|||||++.
T Consensus 267 g~~~~i~p~~y~~~~~~~---~c~~~~~~------~~~~~ILG~~flr~~y~vFD~~~~riGfa~~~ 324 (326)
T cd06096 267 NLKIDWKPSSYLYKKESF---WCKGGEKS------VSNKPILGASFFKNKQIIFDLDNNRIGFVESN 324 (326)
T ss_pred CcEEEECHHHhccccCCc---eEEEEEec------CCCceEEChHHhcCcEEEEECcCCEEeeEcCC
Confidence 899999999999875433 46665543 22479999999999999999999999999873
No 17
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=3.8e-49 Score=398.97 Aligned_cols=278 Identities=30% Similarity=0.540 Sum_probs=240.8
Q ss_pred eEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecce-eEEEEEEEeeec
Q 010195 90 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSG-QISGFFSQDNVK 168 (515)
Q Consensus 90 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~g-s~~G~~~~D~v~ 168 (515)
.|+++|.||||+|++.|++||||+++||+ .|++.|++| ++.|.+++|+|+
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------~~~~~Y~~g~~~~G~~~~D~v~ 52 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------DFSISYGDGTSASGTWGTDTVS 52 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------eeEEEeccCCcEEEEEEEEEEE
Confidence 69999999999999999999999999997 678899996 589999999999
Q ss_pred cceeeeccceEEEEEeeCCccccccccceeeeccCCcccC-----CCCCchHHHHHHcCCCCccEEEEEecCCCCCCCcc
Q 010195 169 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAA-----GNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGG 243 (515)
Q Consensus 169 lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~-----~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G 243 (515)
+++..++++.|||++... ..+||||||+...+. ...++++++|.+||.|++++||+||.+.+ ...|
T Consensus 53 ~g~~~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g~i~~~~Fsl~l~~~~--~~~g 123 (295)
T cd05474 53 IGGATVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQGLIKKNAYSLYLNDLD--ASTG 123 (295)
T ss_pred ECCeEecceEEEEEecCC-------CCcceeeECCCCCcccccCCCcCCCHHHHHHHCCcccceEEEEEeCCCC--CCce
Confidence 999999999999998732 349999999988743 34567999999999999999999998753 2379
Q ss_pred EEEeCccCCCCcccceeEEecccc------cceEEEEeeEEEcCeEee--eecCCceEEEccCccCcccCHHHHHHHHHH
Q 010195 244 EIIFGGFDWRHFRGSHIYVPITEK------GYWQIKVGDILIENSSTG--FCEDGCTAILDSGTSVLAGPTTVVAQINHA 315 (515)
Q Consensus 244 ~L~fGg~D~~~~~g~l~~~p~~~~------~~w~v~l~~i~v~~~~~~--~~~~~~~aivDSGtt~i~lP~~~~~~i~~~ 315 (515)
.|+|||+|++++.|++.|+|+... .+|.|.+++|.+++.... .......++|||||++++||.+++++|.++
T Consensus 124 ~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~ 203 (295)
T cd05474 124 SILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLDSGTTLTYLPSDIVDAIAKQ 203 (295)
T ss_pred eEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEECCCCccEeCCHHHHHHHHHH
Confidence 999999999999999999999765 789999999999998753 234567899999999999999999999999
Q ss_pred hcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHH
Q 010195 316 IGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMI 395 (515)
Q Consensus 316 l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (515)
+++..
T Consensus 204 ~~~~~--------------------------------------------------------------------------- 208 (295)
T cd05474 204 LGATY--------------------------------------------------------------------------- 208 (295)
T ss_pred hCCEE---------------------------------------------------------------------------
Confidence 87650
Q ss_pred HHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECCEEEEeCcccceEeecc--CccceEEE
Q 010195 396 VFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGNRSFPLSPEQYIFKIEE--GHSTICIS 473 (515)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg~~~~i~p~~yi~~~~~--~~~~~C~~ 473 (515)
....+.|.++|+.... |+|+|+|+|.+++||+++|+++... .....|++
T Consensus 209 ----------------------------~~~~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~~~C~~ 259 (295)
T cd05474 209 ----------------------------DSDEGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGDGACYL 259 (295)
T ss_pred ----------------------------cCCCcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCCCCeEE
Confidence 0113568899997766 9999999999999999999987642 24578998
Q ss_pred eEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEec
Q 010195 474 GFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 474 ~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
.|+..+ .+.||||++|||++|++||.+++|||||+|
T Consensus 260 ~i~~~~-----~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 260 GIQPST-----SDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred EEEeCC-----CCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 888643 157999999999999999999999999987
No 18
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=2e-48 Score=413.08 Aligned_cols=304 Identities=20% Similarity=0.377 Sum_probs=236.9
Q ss_pred CCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCcccc--CCCCCCCCCCCceeecC------------------
Q 010195 87 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCY--LHSRYRARLSRTYTKIG------------------ 146 (515)
Q Consensus 87 ~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~--~~~~y~ps~SsT~~~~~------------------ 146 (515)
.+++|+++|.||||||++.|++||||+++||+|.+|. .|. .++.|||++|+||+...
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~---~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCKPCD---DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCCCCc---ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCC
Confidence 4679999999999999999999999999999999997 676 45799999999999753
Q ss_pred --ceEEEEeccee-EEEEEEEeeeccce-----eeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHH
Q 010195 147 --VPCKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNM 218 (515)
Q Consensus 147 --~~~~i~Yg~gs-~~G~~~~D~v~lg~-----~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l 218 (515)
|.|.+.|++|+ +.|.+++|+|+|++ ..++++.|||++...+. |. ...+||||||+...+ ++.||
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~-f~-~~~~GilGLG~~~~S------l~sql 229 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGT-FD-EKGSGIVGLGGGPLS------LISQL 229 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCC-cc-CCCceeEecCCCCcc------HHHHh
Confidence 78999999998 58999999999997 46889999999876542 32 257999999998765 45565
Q ss_pred HHcCCCCccEEEEEecCCC-CCCCccEEEeCccCCCCccc-ceeEEeccc---ccceEEEEeeEEEcCeEeeeecC----
Q 010195 219 VRQGHISQKIFSLWLNQDP-NSEVGGEIIFGGFDWRHFRG-SHIYVPITE---KGYWQIKVGDILIENSSTGFCED---- 289 (515)
Q Consensus 219 ~~qg~i~~~~FSl~l~~~~-~~~~~G~L~fGg~D~~~~~g-~l~~~p~~~---~~~w~v~l~~i~v~~~~~~~~~~---- 289 (515)
..+ +. ++||+||.+.. +....|.|+||+. .++.+ .+.|+|+.. +.+|.|.|++|+||++.+.+...
T Consensus 230 ~~~--~~-~~FSycL~~~~~~~~~~g~l~fG~~--~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~ 304 (431)
T PLN03146 230 GSS--IG-GKFSYCLVPLSSDSNGTSKINFGTN--AIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNG 304 (431)
T ss_pred hHh--hC-CcEEEECCCCCCCCCCcceEEeCCc--cccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCcccccc
Confidence 543 44 58999997532 2234799999984 44544 488999964 46899999999999988754321
Q ss_pred --CceEEEccCccCcccCHHHHHHHHHHhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCccccc
Q 010195 290 --GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMST 367 (515)
Q Consensus 290 --~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ 367 (515)
...+||||||++++||+++|+++.+++... +....
T Consensus 305 ~~~g~~iiDSGTt~t~Lp~~~y~~l~~~~~~~----------------------~~~~~--------------------- 341 (431)
T PLN03146 305 VEEGNIIIDSGTTLTLLPSDFYSELESAVEEA----------------------IGGER--------------------- 341 (431)
T ss_pred CCCCcEEEeCCccceecCHHHHHHHHHHHHHH----------------------hcccc---------------------
Confidence 247999999999999999999998887543 00000
Q ss_pred ceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCC---CCCceEE
Q 010195 368 GIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDI---ASMPYVS 444 (515)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~---~~~P~l~ 444 (515)
. ........+|... ..+|+|+
T Consensus 342 -------------------------------------------------------~-~~~~~~~~~C~~~~~~~~~P~i~ 365 (431)
T PLN03146 342 -------------------------------------------------------V-SDPQGLLSLCYSSTSDIKLPIIT 365 (431)
T ss_pred -------------------------------------------------------C-CCCCCCCCccccCCCCCCCCeEE
Confidence 0 0000112234321 3689999
Q ss_pred EEECCEEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEec
Q 010195 445 FTIGNRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 445 f~fgg~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
|+|+|..+.|+|++|++...++ ..|+..+. . .+.||||+.|||++|++||++++|||||++
T Consensus 366 ~~F~Ga~~~l~~~~~~~~~~~~--~~Cl~~~~-~------~~~~IlG~~~q~~~~vvyDl~~~~igFa~~ 426 (431)
T PLN03146 366 AHFTGADVKLQPLNTFVKVSED--LVCFAMIP-T------SSIAIFGNLAQMNFLVGYDLESKTVSFKPT 426 (431)
T ss_pred EEECCCeeecCcceeEEEcCCC--cEEEEEec-C------CCceEECeeeEeeEEEEEECCCCEEeeecC
Confidence 9999999999999999976543 57986432 1 236999999999999999999999999986
No 19
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.6e-48 Score=392.45 Aligned_cols=287 Identities=22% Similarity=0.397 Sum_probs=223.1
Q ss_pred eEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEeeec
Q 010195 90 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 168 (515)
Q Consensus 90 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~v~ 168 (515)
+|+++|.||||||++.|++||||+++||+|.+| |.|.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~~c------------------------~~~~i~Yg~Gs~~~G~~~~D~v~ 56 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQPC------------------------CLYQVSYGDGSYTTGDLATDTLT 56 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCCCC------------------------CeeeeEeCCCceEEEEEEEEEEE
Confidence 599999999999999999999999999986544 68999999998 58999999999
Q ss_pred ccee-eeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEe
Q 010195 169 IGDM-IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIF 247 (515)
Q Consensus 169 lg~~-~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~f 247 (515)
||+. .++++.|||+....+. + ...+||||||+...+ +..++..+ .+++||+||.+.. ...+|+|+|
T Consensus 57 ig~~~~~~~~~Fg~~~~~~~~-~--~~~~GilGLg~~~~s------~~~ql~~~---~~~~FS~~L~~~~-~~~~G~l~f 123 (299)
T cd05472 57 LGSSDVVPGFAFGCGHDNEGL-F--GGAAGLLGLGRGKLS------LPSQTASS---YGGVFSYCLPDRS-SSSSGYLSF 123 (299)
T ss_pred eCCCCccCCEEEECCccCCCc-c--CCCCEEEECCCCcch------HHHHhhHh---hcCceEEEccCCC-CCCCceEEe
Confidence 9998 8999999999876542 2 267999999987654 34455544 3589999998753 234799999
Q ss_pred CccCCCCcccceeEEecccc----cceEEEEeeEEEcCeEeeee---cCCceEEEccCccCcccCHHHHHHHHHHhcCcc
Q 010195 248 GGFDWRHFRGSHIYVPITEK----GYWQIKVGDILIENSSTGFC---EDGCTAILDSGTSVLAGPTTVVAQINHAIGAEG 320 (515)
Q Consensus 248 Gg~D~~~~~g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~---~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~ 320 (515)
||+|++ .|++.|+|+... .+|.|++++|+|+++.+... .....++|||||+++++|++++++|.+++.+..
T Consensus 124 Gg~d~~--~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~~l~~~l~~~~ 201 (299)
T cd05472 124 GAAASV--PAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYAALRDAFRAAM 201 (299)
T ss_pred CCcccc--CCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHHHHHHHHHHHh
Confidence 999998 899999999753 68999999999999987542 235679999999999999999999999986540
Q ss_pred ccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHH
Q 010195 321 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQ 400 (515)
Q Consensus 321 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (515)
. . ..... +.
T Consensus 202 ~----------~------------~~~~~-----~~-------------------------------------------- 210 (299)
T cd05472 202 A----------A------------YPRAP-----GF-------------------------------------------- 210 (299)
T ss_pred c----------c------------CCCCC-----CC--------------------------------------------
Confidence 0 0 00000 00
Q ss_pred HHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEEC-CEEEEeCcccceEeeccCccceEEEeEEecc
Q 010195 401 MQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALD 479 (515)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fg-g~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~ 479 (515)
+.-..|+ .++|.....+|+|+|+|+ +.++.|+|++|++... .....|+. +...+
T Consensus 211 --------------~~~~~C~---------~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~-~~~~~C~~-~~~~~ 265 (299)
T cd05472 211 --------------SILDTCY---------DLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVD-DSSQVCLA-FAGTS 265 (299)
T ss_pred --------------CCCCccC---------cCCCCcCCccCCEEEEECCCCEEEeCcccEEEEec-CCCCEEEE-EeCCC
Confidence 0000111 123333457999999997 8999999999998432 23467974 44322
Q ss_pred CCCCCCCcEeecHHhhccEEEEEECCCCeEEEEec
Q 010195 480 VPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 480 ~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
..++.||||+.|||++|+|||++++|||||++
T Consensus 266 ---~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~ 297 (299)
T cd05472 266 ---DDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPG 297 (299)
T ss_pred ---CCCCCEEEchHHccceEEEEECCCCEEeEecC
Confidence 13457999999999999999999999999986
No 20
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.1e-46 Score=375.14 Aligned_cols=227 Identities=43% Similarity=0.758 Sum_probs=200.6
Q ss_pred EEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCC--CCCCCCCceeecCceEEEEecceeEEEEEEEeeec
Q 010195 91 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSR--YRARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVK 168 (515)
Q Consensus 91 Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~--y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~ 168 (515)
|+++|.||+|+|++.|++||||+++||+|..|. ...|..... |++..|+++....+.+.+.|++|+++|.+++|+|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~-~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g~~~g~~~~D~v~ 79 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT-SCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDGSVTGGLGTDTVT 79 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC-ccccccCCCCccCccCCceeecCCCEEEEEECCCeEEEEEEEeEEE
Confidence 789999999999999999999999999999997 233333333 89999999999999999999999999999999999
Q ss_pred cceeeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEEeC
Q 010195 169 IGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEIIFG 248 (515)
Q Consensus 169 lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~fG 248 (515)
+++..++++.|||+..... .+.....+||||||+...+.....+++++|.+++.|.+++||+||.+.......|.|+||
T Consensus 80 ~~~~~~~~~~fg~~~~~~~-~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~G 158 (283)
T cd05471 80 IGGLTIPNQTFGCATSESG-DFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISSPVFSFYLGRDGDGGNGGELTFG 158 (283)
T ss_pred ECCEEEeceEEEEEeccCC-cccccccceEeecCCcccccccCCCHHHHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEc
Confidence 9999999999999998764 345567899999999987766678899999999999999999999985322348999999
Q ss_pred ccCCCCcccceeEEeccc--ccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcCc
Q 010195 249 GFDWRHFRGSHIYVPITE--KGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGAE 319 (515)
Q Consensus 249 g~D~~~~~g~l~~~p~~~--~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~~ 319 (515)
|+|++++.+++.|+|+.. ..+|.|.+++|.+++...........++|||||++++||.+++++|.+++.+.
T Consensus 159 g~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~ 231 (283)
T cd05471 159 GIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSSVYDAILKALGAA 231 (283)
T ss_pred ccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHHHHHHHHHHhCCc
Confidence 999999999999999988 78999999999999974223456789999999999999999999999999776
No 21
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=2.6e-45 Score=366.11 Aligned_cols=248 Identities=25% Similarity=0.445 Sum_probs=210.7
Q ss_pred eEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEeeec
Q 010195 90 QYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVK 168 (515)
Q Consensus 90 ~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~v~ 168 (515)
+|+++|+||||||++.|+|||||+++||+| |.+.+.|++|+ ++|.+++|+|+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------~~~~~~Y~dg~~~~G~~~~D~v~ 53 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------CSYEYSYGDGSSTSGVLATETFT 53 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------CceEeEeCCCceeeeeEEEEEEE
Confidence 599999999999999999999999999975 46789999775 79999999999
Q ss_pred ccee--eeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCCccEEE
Q 010195 169 IGDM--IIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEVGGEII 246 (515)
Q Consensus 169 lg~~--~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~~G~L~ 246 (515)
|++. .++++.|||+..... +.....+||||||+...+ ++.+|..++ ++||+||.+..+....|+|+
T Consensus 54 ~g~~~~~~~~~~Fg~~~~~~~--~~~~~~~GIlGLg~~~~s------~~~ql~~~~----~~Fs~~l~~~~~~~~~G~l~ 121 (265)
T cd05476 54 FGDSSVSVPNVAFGCGTDNEG--GSFGGADGILGLGRGPLS------LVSQLGSTG----NKFSYCLVPHDDTGGSSPLI 121 (265)
T ss_pred ecCCCCccCCEEEEecccccC--CccCCCCEEEECCCCccc------HHHHhhccc----CeeEEEccCCCCCCCCCeEE
Confidence 9998 899999999998764 456678999999987543 567787776 79999998753334589999
Q ss_pred eCccCCCCcccceeEEeccc----ccceEEEEeeEEEcCeEeee--------ecCCceEEEccCccCcccCHHHHHHHHH
Q 010195 247 FGGFDWRHFRGSHIYVPITE----KGYWQIKVGDILIENSSTGF--------CEDGCTAILDSGTSVLAGPTTVVAQINH 314 (515)
Q Consensus 247 fGg~D~~~~~g~l~~~p~~~----~~~w~v~l~~i~v~~~~~~~--------~~~~~~aivDSGtt~i~lP~~~~~~i~~ 314 (515)
|||+|++ +.+++.|+|+.. .++|.|++++|+|+++.+.+ ......+++||||+++++|+++
T Consensus 122 fGg~d~~-~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~~lp~~~------ 194 (265)
T cd05476 122 LGDAADL-GGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLTYLPDPA------ 194 (265)
T ss_pred ECCcccc-cCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcceEcCccc------
Confidence 9999999 999999999976 57999999999999987642 3456789999999999999631
Q ss_pred HhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhH
Q 010195 315 AIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEM 394 (515)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (515)
T Consensus 195 -------------------------------------------------------------------------------- 194 (265)
T cd05476 195 -------------------------------------------------------------------------------- 194 (265)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEEC-CEEEEeCcccceEeeccCccceEEE
Q 010195 395 IVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICIS 473 (515)
Q Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fg-g~~~~i~p~~yi~~~~~~~~~~C~~ 473 (515)
+|+|+|+|+ ++.+.++|++|+.... ....|+.
T Consensus 195 ---------------------------------------------~P~i~~~f~~~~~~~i~~~~y~~~~~--~~~~C~~ 227 (265)
T cd05476 195 ---------------------------------------------YPDLTLHFDGGADLELPPENYFVDVG--EGVVCLA 227 (265)
T ss_pred ---------------------------------------------cCCEEEEECCCCEEEeCcccEEEECC--CCCEEEE
Confidence 288999998 8999999999998543 3468976
Q ss_pred eEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEecC
Q 010195 474 GFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 474 ~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a~ 515 (515)
.+. . +..+.||||++|||++|++||.+++|||||++.
T Consensus 228 ~~~-~----~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~ 264 (265)
T cd05476 228 ILS-S----SSGGVSILGNIQQQNFLVEYDLENSRLGFAPAD 264 (265)
T ss_pred Eec-C----CCCCcEEEChhhcccEEEEEECCCCEEeeecCC
Confidence 442 2 245689999999999999999999999999873
No 22
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.8e-45 Score=365.77 Aligned_cols=258 Identities=23% Similarity=0.396 Sum_probs=213.6
Q ss_pred ceEEEEEEecCCCCeEEEEEcCCCCCeeEeCC-CCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEee
Q 010195 89 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSS-KCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDN 166 (515)
Q Consensus 89 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~-~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~ 166 (515)
++|+++|.||||||++.|++||||+++||+|. .|. .| .|.|.++|++|+ +.|.+++|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~---~c-----------------~c~~~i~Ygd~~~~~G~~~~D~ 60 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT---GC-----------------QCDYEIEYADGGSSMGVLVTDI 60 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC---CC-----------------cCccEeEeCCCCceEEEEEEEE
Confidence 47999999999999999999999999999984 575 45 468999999664 899999999
Q ss_pred eccce----eeeccceEEEEEeeCCcc-ccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEEEEEecCCCCCCC
Q 010195 167 VKIGD----MIIKDQEFVEVTKEGLLP-FLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIFSLWLNQDPNSEV 241 (515)
Q Consensus 167 v~lg~----~~v~~~~fg~~~~~~~~~-~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~FSl~l~~~~~~~~ 241 (515)
|++++ ..+.++.|||+....... ......|||||||+... +++.+|.+++.| +++||+||.+. .
T Consensus 61 v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~------s~~~ql~~~~~i-~~~Fs~~l~~~----~ 129 (273)
T cd05475 61 FSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKI------SLPSQLASQGII-KNVIGHCLSSN----G 129 (273)
T ss_pred EEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCC------CHHHHHHhcCCc-CceEEEEccCC----C
Confidence 99964 577889999998755422 23457899999998754 478899999999 89999999863 2
Q ss_pred ccEEEeCccCCCCcccceeEEecccc---cceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHHHHHhcC
Q 010195 242 GGEIIFGGFDWRHFRGSHIYVPITEK---GYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQINHAIGA 318 (515)
Q Consensus 242 ~G~L~fGg~D~~~~~g~l~~~p~~~~---~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i~~~l~~ 318 (515)
+|.|+|| |..++.+++.|+|+.+. ++|.|++.+|+||++.. ......++|||||+++++|+++|
T Consensus 130 ~g~l~~G--~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~--~~~~~~~ivDTGTt~t~lp~~~y--------- 196 (273)
T cd05475 130 GGFLFFG--DDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPT--GGKGLEVVFDSGSSYTYFNAQAY--------- 196 (273)
T ss_pred CeEEEEC--CCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEEC--cCCCceEEEECCCceEEcCCccc---------
Confidence 6899998 45667889999999764 79999999999999854 34567899999999999997421
Q ss_pred ccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHH
Q 010195 319 EGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFW 398 (515)
Q Consensus 319 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (515)
T Consensus 197 -------------------------------------------------------------------------------- 196 (273)
T cd05475 197 -------------------------------------------------------------------------------- 196 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECC----EEEEeCcccceEeeccCccceEEEe
Q 010195 399 IQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGN----RSFPLSPEQYIFKIEEGHSTICISG 474 (515)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg----~~~~i~p~~yi~~~~~~~~~~C~~~ 474 (515)
+|+|+|.|++ ++++|+|++|++.... ...|+..
T Consensus 197 -----------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl~~ 233 (273)
T cd05475 197 -----------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCLGI 233 (273)
T ss_pred -----------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEEEE
Confidence 4889999976 7999999999986543 3579887
Q ss_pred EEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEecC
Q 010195 475 FIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEAA 515 (515)
Q Consensus 475 ~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a~ 515 (515)
+...+. ..++.||||+.|||++|++||++++|||||++.
T Consensus 234 ~~~~~~--~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~ 272 (273)
T cd05475 234 LNGSEI--GLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSD 272 (273)
T ss_pred ecCCCc--CCCceEEECceEEEeeEEEEECcCCEeCcccCC
Confidence 754331 234589999999999999999999999999874
No 23
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=5.6e-41 Score=348.71 Aligned_cols=313 Identities=18% Similarity=0.253 Sum_probs=229.4
Q ss_pred ecCCCCe-EEEEEcCCCCCeeEeCCC----------CCCCccccCCCCCCCCC------CCceeecCceEEEE-eccee-
Q 010195 97 IGSPPQS-FSVVFDTGSSNLWVPSSK----------CLFSISCYLHSRYRARL------SRTYTKIGVPCKIH-YGSGQ- 157 (515)
Q Consensus 97 IGtP~Q~-~~v~lDTGSs~~wV~~~~----------C~~~~~C~~~~~y~ps~------SsT~~~~~~~~~i~-Yg~gs- 157 (515)
+|||-.+ +.|++||||+++||+|.+ |. +..|..+..|++.+ ++......|.|... |++|+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~~~sst~~~~~C~-s~~C~~~~~~~~~~~~~~~~~~~c~~~~C~y~~~~y~~gs~ 80 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDAGHSSTYQTVPCS-SSVCSLANRYHCPGTCGGAPGPGCGNNTCTAHPYNPVTGEC 80 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCCCCcCCCCccCcC-ChhhccccccCCCccccCCCCCCCCCCcCeeEccccccCcE
Confidence 5788777 999999999999997764 44 56776666676542 22333344767554 77886
Q ss_pred EEEEEEEeeeccce--------eeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcCCCCccEE
Q 010195 158 ISGFFSQDNVKIGD--------MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQGHISQKIF 229 (515)
Q Consensus 158 ~~G~~~~D~v~lg~--------~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg~i~~~~F 229 (515)
..|++++|+|+|+. ..++++.|||+.......+ ...+|||||||+..+|. ..||..++. .+++|
T Consensus 81 t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~-~~~~dGIlGLg~~~lSl------~sql~~~~~-~~~~F 152 (362)
T cd05489 81 ATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGL-PPGAQGVAGLGRSPLSL------PAQLASAFG-VARKF 152 (362)
T ss_pred eeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCC-ccccccccccCCCccch------HHHhhhhcC-CCcce
Confidence 68999999999973 3688999999987532122 23479999999998873 446666555 46899
Q ss_pred EEEecCCCCCCCccEEEeCccCCCCcc------cceeEEecccc----cceEEEEeeEEEcCeEeeee--------cCCc
Q 010195 230 SLWLNQDPNSEVGGEIIFGGFDWRHFR------GSHIYVPITEK----GYWQIKVGDILIENSSTGFC--------EDGC 291 (515)
Q Consensus 230 Sl~l~~~~~~~~~G~L~fGg~D~~~~~------g~l~~~p~~~~----~~w~v~l~~i~v~~~~~~~~--------~~~~ 291 (515)
|+||.+.. ...|.|+||+.+..++. +.+.|+|+... .+|.|+|++|+||++.+.+. .+..
T Consensus 153 S~CL~~~~--~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~~ 230 (362)
T cd05489 153 ALCLPSSP--GGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGPG 230 (362)
T ss_pred EEEeCCCC--CCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCCC
Confidence 99998753 23799999999988774 78999999754 79999999999999987542 2345
Q ss_pred eEEEccCccCcccCHHHHHHHHHHhcCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceee
Q 010195 292 TAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIET 371 (515)
Q Consensus 292 ~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 371 (515)
.++|||||++++||.++|++|.+++.+.. ..+.. ..+..
T Consensus 231 g~iiDSGTs~t~lp~~~y~~l~~a~~~~~----------~~~~~---------~~~~~---------------------- 269 (362)
T cd05489 231 GVKLSTVVPYTVLRSDIYRAFTQAFAKAT----------ARIPR---------VPAAA---------------------- 269 (362)
T ss_pred cEEEecCCceEEECHHHHHHHHHHHHHHh----------cccCc---------CCCCC----------------------
Confidence 79999999999999999999999986540 00000 00000
Q ss_pred eeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCCCCCCceEEcCCCCCCCceEEEEECC--
Q 010195 372 VVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLPNPMGKSFINCDDIASMPYVSFTIGN-- 449 (515)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~g~~~~~C~~~~~~P~l~f~fgg-- 449 (515)
.+.+.|+.... ...|+....+|+|+|+|+|
T Consensus 270 -------------------------------------------~~~~~C~~~~~-----~~~~~~~~~~P~it~~f~g~g 301 (362)
T cd05489 270 -------------------------------------------VFPELCYPASA-----LGNTRLGYAVPAIDLVLDGGG 301 (362)
T ss_pred -------------------------------------------CCcCccccCCC-----cCCcccccccceEEEEEeCCC
Confidence 00123443221 1233334689999999965
Q ss_pred EEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcEeecHHhhccEEEEEECCCCeEEEEec
Q 010195 450 RSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHTVFDFGNLQIGFAEA 514 (515)
Q Consensus 450 ~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~vfD~~~~rIGfA~a 514 (515)
+++.|+|++|+++..+ ...|+ +|...+.. .++.||||+.|||++|++||.+++|||||++
T Consensus 302 ~~~~l~~~ny~~~~~~--~~~Cl-~f~~~~~~--~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 302 VNWTIFGANSMVQVKG--GVACL-AFVDGGSE--PRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred eEEEEcCCceEEEcCC--CcEEE-EEeeCCCC--CCceEEEeeheecceEEEEECCCCEeecccC
Confidence 9999999999998654 35796 56554321 2458999999999999999999999999975
No 24
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.88 E-value=3.5e-22 Score=172.12 Aligned_cols=108 Identities=52% Similarity=0.840 Sum_probs=96.1
Q ss_pred EEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCC-CCCCCCceeecCceEEEEecceeEEEEEEEeeeccce
Q 010195 93 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRY-RARLSRTYTKIGVPCKIHYGSGQISGFFSQDNVKIGD 171 (515)
Q Consensus 93 ~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y-~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~D~v~lg~ 171 (515)
++|.||||||++.|+|||||+++||+|..|. ...|..+..| +|+.|++++...+.|.+.|++|++.|.++.|+|+|++
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~-~~~~~~~~~~~~~~~sst~~~~~~~~~~~Y~~g~~~g~~~~D~v~ig~ 79 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ-SLAIYSHSSYDDPSASSTYSDNGCTFSITYGTGSLSGGLSTDTVSIGD 79 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC-CcccccccccCCcCCCCCCCCCCcEEEEEeCCCeEEEEEEEEEEEECC
Confidence 4799999999999999999999999999997 3344455566 9999999999999999999999999999999999999
Q ss_pred eeeccceEEEEEeeCCccccccccceeeec
Q 010195 172 MIIKDQEFVEVTKEGLLPFLALQFDGILGL 201 (515)
Q Consensus 172 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGL 201 (515)
..++++.||++....+..+.....+|||||
T Consensus 80 ~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 80 IEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred EEECCEEEEEEEecCCccccccccccccCC
Confidence 999999999999887654555678999998
No 25
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.86 E-value=7.2e-21 Score=176.48 Aligned_cols=136 Identities=35% Similarity=0.551 Sum_probs=106.1
Q ss_pred EEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecC----------------------ce
Q 010195 91 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIG----------------------VP 148 (515)
Q Consensus 91 Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~----------------------~~ 148 (515)
|+++|.||||+|++.|++||||+.+|++| ..+.|+|.+|+||+... |.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 89999999999999999999999999987 25678888888887742 58
Q ss_pred EEEEeccee-EEEEEEEeeeccce-----eeeccceEEEEEeeCCccccccccceeeeccCCcccCCCCCchHHHHHHcC
Q 010195 149 CKIHYGSGQ-ISGFFSQDNVKIGD-----MIIKDQEFVEVTKEGLLPFLALQFDGILGLGFRDIAAGNATPLWYNMVRQG 222 (515)
Q Consensus 149 ~~i~Yg~gs-~~G~~~~D~v~lg~-----~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~~~~~~~l~~qg 222 (515)
|.+.|++++ +.|.+++|+++++. ..+.++.|||+....+.. ...+||||||+..++ ++.||.++
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~---~~~~GilGLg~~~~S------l~sQl~~~- 140 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF---YGADGILGLGRGPLS------LPSQLASS- 140 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS---TTEEEEEE-SSSTTS------HHHHHHHH-
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC---cCCCcccccCCCccc------HHHHHHHh-
Confidence 999999887 69999999999986 457889999999877532 277999999988766 67888887
Q ss_pred CCCccEEEEEecCCCCCCCccEEEeCc
Q 010195 223 HISQKIFSLWLNQDPNSEVGGEIIFGG 249 (515)
Q Consensus 223 ~i~~~~FSl~l~~~~~~~~~G~L~fGg 249 (515)
..+.||+||.+ .+....|.|+||+
T Consensus 141 --~~~~FSyCL~~-~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 141 --SGNKFSYCLPS-SSPSSSGFLSFGD 164 (164)
T ss_dssp ----SEEEEEB-S--SSSSEEEEEECS
T ss_pred --cCCeEEEECCC-CCCCCCEEEEeCc
Confidence 56899999998 2334589999995
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.75 E-value=9.9e-18 Score=154.99 Aligned_cols=153 Identities=24% Similarity=0.376 Sum_probs=103.8
Q ss_pred ceEEEEeeEEEcCeEeeeecC-------CceEEEccCccCcccCHHHHHHHHHHhcCccccccccceeeeecchhhhhhh
Q 010195 269 YWQIKVGDILIENSSTGFCED-------GCTAILDSGTSVLAGPTTVVAQINHAIGAEGIVSMQCKTVVFEYGNMIWEFL 341 (515)
Q Consensus 269 ~w~v~l~~i~v~~~~~~~~~~-------~~~aivDSGtt~i~lP~~~~~~i~~~l~~~~~~~~~~~~~~~~y~~~~~~~~ 341 (515)
+|.|++.+|+||++.+.+... ...++|||||++++||+++|+.+.+++.+..
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~--------------------- 59 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQM--------------------- 59 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHH---------------------
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHh---------------------
Confidence 488999999999999876544 4689999999999999999999999996540
Q ss_pred hcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhc
Q 010195 342 ISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCE 421 (515)
Q Consensus 342 ~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~ 421 (515)
....... +.-..-..++|+
T Consensus 60 -~~~~~~~------------------------------------------------------------~~~~~~~~~~Cy 78 (161)
T PF14541_consen 60 -GAPGVSR------------------------------------------------------------EAPPFSGFDLCY 78 (161)
T ss_dssp -HTCT--C------------------------------------------------------------EE---TT-S-EE
T ss_pred -hhccccc------------------------------------------------------------ccccCCCCCcee
Confidence 0000000 000001123455
Q ss_pred cCCCCCCceEEcCCCCCCCceEEEEEC-CEEEEeCcccceEeeccCccceEEEeEEeccCCCCCCCcEeecHHhhccEEE
Q 010195 422 VLPNPMGKSFINCDDIASMPYVSFTIG-NRSFPLSPEQYIFKIEEGHSTICISGFIALDVPPPQGPLWVLGDMFLRAYHT 500 (515)
Q Consensus 422 ~~~~~~g~~~~~C~~~~~~P~l~f~fg-g~~~~i~p~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILG~~FLr~~y~ 500 (515)
..+... .+ .....+|+|+|+|. |.+++|+|++|++...+ ...|++.... + ....+..|||+.+|+++++
T Consensus 79 ~~~~~~----~~-~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~-~--~~~~~~~viG~~~~~~~~v 148 (161)
T PF14541_consen 79 NLSSFG----VN-RDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPS-D--ADDDGVSVIGNFQQQNYHV 148 (161)
T ss_dssp EGGCS-----EE-TTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEE-T--STTSSSEEE-HHHCCTEEE
T ss_pred eccccc----cc-cccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEcc-C--CCCCCcEEECHHHhcCcEE
Confidence 554311 01 12258999999996 89999999999998764 3789985544 1 2344689999999999999
Q ss_pred EEECCCCeEEEEe
Q 010195 501 VFDFGNLQIGFAE 513 (515)
Q Consensus 501 vfD~~~~rIGfA~ 513 (515)
+||++++||||+|
T Consensus 149 ~fDl~~~~igF~~ 161 (161)
T PF14541_consen 149 VFDLENGRIGFAP 161 (161)
T ss_dssp EEETTTTEEEEEE
T ss_pred EEECCCCEEEEeC
Confidence 9999999999996
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.04 E-value=9e-06 Score=67.45 Aligned_cols=93 Identities=20% Similarity=0.397 Sum_probs=66.1
Q ss_pred ceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeE-EEEEEEeee
Q 010195 89 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQI-SGFFSQDNV 167 (515)
Q Consensus 89 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~-~G~~~~D~v 167 (515)
+.|++++.|+. +++++++|||++.+|+...... .+.. . ........+...+|.. ......+.+
T Consensus 1 ~~~~v~v~i~~--~~~~~llDTGa~~s~i~~~~~~---~l~~--~---------~~~~~~~~~~~~~G~~~~~~~~~~~i 64 (96)
T cd05483 1 GHFVVPVTING--QPVRFLLDTGASTTVISEELAE---RLGL--P---------LTLGGKVTVQTANGRVRAARVRLDSL 64 (96)
T ss_pred CcEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH---HcCC--C---------ccCCCcEEEEecCCCccceEEEcceE
Confidence 36899999995 9999999999999999764321 1111 0 1122345566777773 455568999
Q ss_pred ccceeeeccceEEEEEeeCCccccccccceeeeccC
Q 010195 168 KIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 203 (515)
Q Consensus 168 ~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 203 (515)
++|+..++++.+..+..... ..+||||+.+
T Consensus 65 ~ig~~~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 65 QIGGITLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred EECCcEEeccEEEEeCCccc------CCceEeChHH
Confidence 99999999998887765331 4599999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.41 E-value=0.00061 Score=59.90 Aligned_cols=101 Identities=20% Similarity=0.372 Sum_probs=67.7
Q ss_pred EeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeE-E
Q 010195 81 VYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQI-S 159 (515)
Q Consensus 81 ~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~-~ 159 (515)
++|....++.|++++.|.. +++.+++|||++.+-+....-. .-..++.. ......+.=+.|.. .
T Consensus 2 ~~i~~~~~g~~~v~~~InG--~~~~flVDTGAs~t~is~~~A~-------~Lgl~~~~------~~~~~~~~ta~G~~~~ 66 (121)
T TIGR02281 2 VQLAKDGDGHFYATGRVNG--RNVRFLVDTGATSVALNEEDAQ-------RLGLDLNR------LGYTVTVSTANGQIKA 66 (121)
T ss_pred EEEEEcCCCeEEEEEEECC--EEEEEEEECCCCcEEcCHHHHH-------HcCCCccc------CCceEEEEeCCCcEEE
Confidence 4566667899999999976 7999999999999987643211 00111111 11233344455654 3
Q ss_pred EEEEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccC
Q 010195 160 GFFSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 203 (515)
Q Consensus 160 G~~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 203 (515)
..+.-|.+++|+..++|+.+.++..... .+|+||+.+
T Consensus 67 ~~~~l~~l~iG~~~~~nv~~~v~~~~~~-------~~~LLGm~f 103 (121)
T TIGR02281 67 ARVTLDRVAIGGIVVNDVDAMVAEGGAL-------SESLLGMSF 103 (121)
T ss_pred EEEEeCEEEECCEEEeCcEEEEeCCCcC-------CceEcCHHH
Confidence 4557899999999999999777643211 179999964
No 29
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=97.08 E-value=0.00074 Score=46.70 Aligned_cols=37 Identities=41% Similarity=0.648 Sum_probs=35.2
Q ss_pred cchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCC
Q 010195 388 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 424 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 424 (515)
.|..|++++.++++.+..+.|++.|.+++.+.|..+|
T Consensus 3 ~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 3 ECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred cchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 6999999999999999999999999999999998775
No 30
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.60 E-value=0.0086 Score=48.72 Aligned_cols=88 Identities=23% Similarity=0.313 Sum_probs=53.6
Q ss_pred EEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEeeeccce
Q 010195 93 GEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDNVKIGD 171 (515)
Q Consensus 93 ~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~v~lg~ 171 (515)
+++.|+. +++++++|||++.+.+...-+. .....+.. ......+.-.+|. .......+.+++|+
T Consensus 1 V~v~vng--~~~~~liDTGa~~~~i~~~~~~-------~l~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~i~ig~ 65 (90)
T PF13650_consen 1 VPVKVNG--KPVRFLIDTGASISVISRSLAK-------KLGLKPRP------KSVPISVSGAGGSVTVYRGRVDSITIGG 65 (90)
T ss_pred CEEEECC--EEEEEEEcCCCCcEEECHHHHH-------HcCCCCcC------CceeEEEEeCCCCEEEEEEEEEEEEECC
Confidence 3577776 8999999999998877644332 00111111 1111233334444 33445566899999
Q ss_pred eeeccceEEEEEeeCCccccccccceeeecc
Q 010195 172 MIIKDQEFVEVTKEGLLPFLALQFDGILGLG 202 (515)
Q Consensus 172 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg 202 (515)
..+.++.|-.... ....+||||+-
T Consensus 66 ~~~~~~~~~v~~~-------~~~~~~iLG~d 89 (90)
T PF13650_consen 66 ITLKNVPFLVVDL-------GDPIDGILGMD 89 (90)
T ss_pred EEEEeEEEEEECC-------CCCCEEEeCCc
Confidence 9988888766651 23448999974
No 31
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=96.07 E-value=0.00052 Score=46.40 Aligned_cols=34 Identities=38% Similarity=0.863 Sum_probs=32.4
Q ss_pred cccceeeeecchhhhhhhhcCCCCCcccccCcce
Q 010195 324 MQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 357 (515)
Q Consensus 324 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 357 (515)
.+|+.++++|++.|++.+.....|+++|...|+|
T Consensus 2 ~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 2 DECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 5799999999999999999999999999999988
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.69 E-value=0.096 Score=53.90 Aligned_cols=198 Identities=17% Similarity=0.209 Sum_probs=106.0
Q ss_pred eEEEEEEecCCC----CeE-EEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEEEE
Q 010195 90 QYYGEIGIGSPP----QSF-SVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFFSQ 164 (515)
Q Consensus 90 ~Y~~~I~IGtP~----Q~~-~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~~~ 164 (515)
.-++.|+|=-|. |++ +|++||||.-+=|..+.-.. ..........+....-.+ ...|++|...|-+.+
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~----~l~~~Lp~~t~~g~~laE---C~~F~sgytWGsVr~ 95 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPS----SLAGSLPQQTGGGAPLAE---CAQFASGYTWGSVRT 95 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhch----hhhccCCcccCCCcchhh---hhhccCcccccceEE
Confidence 345556653332 566 49999999987766543210 000011111111111111 246888888899999
Q ss_pred eeeccceeeeccceEEEEEeeC-----------C---ccccccccceeeeccCCcccC----------------CCC---
Q 010195 165 DNVKIGDMIIKDQEFVEVTKEG-----------L---LPFLALQFDGILGLGFRDIAA----------------GNA--- 211 (515)
Q Consensus 165 D~v~lg~~~v~~~~fg~~~~~~-----------~---~~~~~~~~dGIlGLg~~~~s~----------------~~~--- 211 (515)
-+|+|++....++++.++.+.. + ........+||||+|.-.... +..
T Consensus 96 AdV~igge~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~~~DcG~~C~~sa~~~~YY~C~~~~sC 175 (370)
T PF11925_consen 96 ADVTIGGETASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPFPYDCGAACAQSALPGNYYSCPSGGSC 175 (370)
T ss_pred EEEEEcCeeccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCCccccCchhhcccCCCceEECCCCCCe
Confidence 9999999776666666664321 0 012356789999998653221 001
Q ss_pred CchHHHHHHcCCCCccEEEEEecCCC------------CCCCccEEEeC-ccCCCC-cccceeEEecccccceEEEEeeE
Q 010195 212 TPLWYNMVRQGHISQKIFSLWLNQDP------------NSEVGGEIIFG-GFDWRH-FRGSHIYVPITEKGYWQIKVGDI 277 (515)
Q Consensus 212 ~~~~~~l~~qg~i~~~~FSl~l~~~~------------~~~~~G~L~fG-g~D~~~-~~g~l~~~p~~~~~~w~v~l~~i 277 (515)
.+.-..+-+| +..|+..|-.+++. .....|.|+|| |..... ..+.....+....++..-
T Consensus 176 t~t~v~~~~Q--V~NPV~~Fa~DNNGvii~lP~v~~~Ga~SatG~LiFGIgTQsNN~l~~~~~~~~~~~~G~~tt----- 248 (370)
T PF11925_consen 176 TSTTVPLAQQ--VANPVARFATDNNGVIIQLPAVSASGAASATGTLIFGIGTQSNNALPSGATVLTTDSNGDFTT----- 248 (370)
T ss_pred ecccchhhhc--ccCcccccCccCCeEEEecCCCCCCCCccceEEEEEecCCcccCcccccceEEeecCCceEEE-----
Confidence 0111112222 55566655433321 23458999998 222111 222245556666665332
Q ss_pred EEcCeEeeeecCCceEEEccCccCcccCHH
Q 010195 278 LIENSSTGFCEDGCTAILDSGTSVLAGPTT 307 (515)
Q Consensus 278 ~v~~~~~~~~~~~~~aivDSGtt~i~lP~~ 307 (515)
.++|.... ...||||+.-.++|..
T Consensus 249 ~~~G~t~~------~sf~DSGSNg~fF~d~ 272 (370)
T PF11925_consen 249 TFNGQTYS------ASFFDSGSNGYFFPDS 272 (370)
T ss_pred EecCceee------eeeEecCCceeeccCC
Confidence 33444332 2499999999998854
No 33
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.49 E-value=0.054 Score=47.66 Aligned_cols=94 Identities=20% Similarity=0.298 Sum_probs=59.3
Q ss_pred ecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEE-EEeccee--EEEE
Q 010195 85 NYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCK-IHYGSGQ--ISGF 161 (515)
Q Consensus 85 ~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~-i~Yg~gs--~~G~ 161 (515)
......+++++.|+. +++++++|||++.+++...-+. .+.-.. .. ...+. ...+.|. ..|.
T Consensus 11 ~~~~~~~~v~~~Ing--~~~~~LvDTGAs~s~Is~~~a~---~lgl~~----~~-------~~~~~~~~~g~g~~~~~g~ 74 (124)
T cd05479 11 FGKVPMLYINVEING--VPVKAFVDSGAQMTIMSKACAE---KCGLMR----LI-------DKRFQGIAKGVGTQKILGR 74 (124)
T ss_pred hceeeEEEEEEEECC--EEEEEEEeCCCceEEeCHHHHH---HcCCcc----cc-------CcceEEEEecCCCcEEEeE
Confidence 334578899999997 8899999999999988644322 121111 00 11111 1223232 4677
Q ss_pred EEEeeeccceeeeccceEEEEEeeCCccccccccceeeeccC
Q 010195 162 FSQDNVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 203 (515)
Q Consensus 162 ~~~D~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 203 (515)
...+.+++++...+ ..|.+.... ..|+|||+.+
T Consensus 75 ~~~~~l~i~~~~~~-~~~~Vl~~~--------~~d~ILG~d~ 107 (124)
T cd05479 75 IHLAQVKIGNLFLP-CSFTVLEDD--------DVDFLIGLDM 107 (124)
T ss_pred EEEEEEEECCEEee-eEEEEECCC--------CcCEEecHHH
Confidence 77889999998765 666555322 4499999953
No 34
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=95.05 E-value=0.13 Score=48.78 Aligned_cols=92 Identities=13% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCceEEeceecCCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecc
Q 010195 76 PKADVVYLNNYLDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGS 155 (515)
Q Consensus 76 ~~~~~~~l~~~~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~ 155 (515)
.+...+.|....++.|.++..|-. |+++.++|||-+.+.+...+-. .-.++.+. .+.++.+.=.+
T Consensus 91 ~g~~~v~Lak~~~GHF~a~~~VNG--k~v~fLVDTGATsVal~~~dA~-------RlGid~~~------l~y~~~v~TAN 155 (215)
T COG3577 91 DGYQEVSLAKSRDGHFEANGRVNG--KKVDFLVDTGATSVALNEEDAR-------RLGIDLNS------LDYTITVSTAN 155 (215)
T ss_pred CCceEEEEEecCCCcEEEEEEECC--EEEEEEEecCcceeecCHHHHH-------HhCCCccc------cCCceEEEccC
Confidence 355678899999999999999987 9999999999999888654421 22344322 23455566677
Q ss_pred eeEE-EEEEEeeeccceeeeccceEEEE
Q 010195 156 GQIS-GFFSQDNVKIGDMIIKDQEFVEV 182 (515)
Q Consensus 156 gs~~-G~~~~D~v~lg~~~v~~~~fg~~ 182 (515)
|... -.+--|+|.||++.++|+.--++
T Consensus 156 G~~~AA~V~Ld~v~IG~I~~~nV~A~V~ 183 (215)
T COG3577 156 GRARAAPVTLDRVQIGGIRVKNVDAMVA 183 (215)
T ss_pred CccccceEEeeeEEEccEEEcCchhhee
Confidence 8764 55778999999999988874444
No 35
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.61 E-value=0.45 Score=41.81 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.5
Q ss_pred cEeecHHhhccEEEEEECCCCeEEE
Q 010195 487 LWVLGDMFLRAYHTVFDFGNLQIGF 511 (515)
Q Consensus 487 ~~ILG~~FLr~~y~vfD~~~~rIGf 511 (515)
..|||..||+.+-.+.|+.+++|-+
T Consensus 100 d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 100 DFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CEEecHHHHHhCCeEEECCCCEEEC
Confidence 5699999999999999999998853
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=93.55 E-value=0.21 Score=41.16 Aligned_cols=76 Identities=13% Similarity=0.083 Sum_probs=47.7
Q ss_pred EEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee---EEEEEEEeee
Q 010195 91 YYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ---ISGFFSQDNV 167 (515)
Q Consensus 91 Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs---~~G~~~~D~v 167 (515)
|++.+.|+. +++.+++||||+.+++..+.+. .....+ .......+.-.+|. ..|.+ .+.+
T Consensus 1 ~~~~~~Ing--~~i~~lvDTGA~~svis~~~~~-------~lg~~~-------~~~~~~~v~~a~G~~~~~~G~~-~~~v 63 (91)
T cd05484 1 KTVTLLVNG--KPLKFQLDTGSAITVISEKTWR-------KLGSPP-------LKPTKKRLRTATGTKLSVLGQI-LVTV 63 (91)
T ss_pred CEEEEEECC--EEEEEEEcCCcceEEeCHHHHH-------HhCCCc-------cccccEEEEecCCCEeeEeEEE-EEEE
Confidence 578899987 8999999999999999765442 000011 11123333334444 36776 7899
Q ss_pred ccceeeeccceEEEEEe
Q 010195 168 KIGDMIIKDQEFVEVTK 184 (515)
Q Consensus 168 ~lg~~~v~~~~fg~~~~ 184 (515)
++++.+. ...|-+...
T Consensus 64 ~~~~~~~-~~~~~v~~~ 79 (91)
T cd05484 64 KYGGKTK-VLTLYVVKN 79 (91)
T ss_pred EECCEEE-EEEEEEEEC
Confidence 9998774 355555543
No 37
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=92.66 E-value=0.33 Score=43.49 Aligned_cols=27 Identities=22% Similarity=0.379 Sum_probs=24.8
Q ss_pred cEeecHHhhccEEEEEECCCCeEEEEe
Q 010195 487 LWVLGDMFLRAYHTVFDFGNLQIGFAE 513 (515)
Q Consensus 487 ~~ILG~~FLr~~y~vfD~~~~rIGfA~ 513 (515)
..|||.++|+.+...-|+.+++|-|-.
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~ 131 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNS 131 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeC
Confidence 479999999999999999999999864
No 38
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=91.97 E-value=3 Score=36.48 Aligned_cols=37 Identities=11% Similarity=0.179 Sum_probs=28.0
Q ss_pred cccceEEEEeeEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 266 EKGYWQIKVGDILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 266 ~~~~w~v~l~~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
..+.+.++ +.++|.++ .++||||++.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~~-------~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRNV-------RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 34555544 56788755 499999999999999988764
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=91.54 E-value=0.68 Score=37.80 Aligned_cols=81 Identities=20% Similarity=0.167 Sum_probs=46.8
Q ss_pred EEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEecceeEEEEE-EEe-eeccce
Q 010195 94 EIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQISGFF-SQD-NVKIGD 171 (515)
Q Consensus 94 ~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs~~G~~-~~D-~v~lg~ 171 (515)
.+.|.. +++++++|||++.+-+...... .. . ...+...+.=.+|...-.+ ..+ .+.+|+
T Consensus 2 ~v~InG--~~~~fLvDTGA~~tii~~~~a~---~~-----~---------~~~~~~~v~gagG~~~~~v~~~~~~v~vg~ 62 (86)
T cd06095 2 TITVEG--VPIVFLVDTGATHSVLKSDLGP---KQ-----E---------LSTTSVLIRGVSGQSQQPVTTYRTLVDLGG 62 (86)
T ss_pred EEEECC--EEEEEEEECCCCeEEECHHHhh---hc-----c---------CCCCcEEEEeCCCcccccEEEeeeEEEECC
Confidence 355655 8999999999999999765543 10 0 1112233333333321111 123 699999
Q ss_pred eeeccceEEEEEeeCCccccccccceeeeccC
Q 010195 172 MIIKDQEFVEVTKEGLLPFLALQFDGILGLGF 203 (515)
Q Consensus 172 ~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg~ 203 (515)
....+ .|...... .++|||+.+
T Consensus 63 ~~~~~-~~~v~~~~---------~~~lLG~df 84 (86)
T cd06095 63 HTVSH-SFLVVPNC---------PDPLLGRDL 84 (86)
T ss_pred EEEEE-EEEEEcCC---------CCcEechhh
Confidence 88885 34444321 178999864
No 40
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=83.78 E-value=5.6 Score=33.96 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.3
Q ss_pred cEeecHHhhccEEEEEECCCCeE
Q 010195 487 LWVLGDMFLRAYHTVFDFGNLQI 509 (515)
Q Consensus 487 ~~ILG~~FLr~~y~vfD~~~~rI 509 (515)
..+||..||+++-.+.|+.++++
T Consensus 85 ~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 85 EPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred ccEecHHHHhhCCEEEehhhCcC
Confidence 57999999999999999988753
No 41
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=83.40 E-value=1.6 Score=33.71 Aligned_cols=37 Identities=43% Similarity=0.729 Sum_probs=35.3
Q ss_pred cchhhhHHHHHHHHHHhhhhhHHHHHHHHhhhhccCC
Q 010195 388 LCAFCEMIVFWIQMQLKQQKTKEAIFKYADKLCEVLP 424 (515)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 424 (515)
.|..|+.++..++..+..+.+++.+.+++.++|..++
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~ 38 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLP 38 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999987
No 42
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=82.69 E-value=1.9 Score=33.92 Aligned_cols=34 Identities=21% Similarity=0.353 Sum_probs=29.8
Q ss_pred CCceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCC
Q 010195 87 LDAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 122 (515)
Q Consensus 87 ~~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C 122 (515)
..+.+++++.||. +.+.+++|||++...|+.+.+
T Consensus 5 ~~g~~~v~~~I~g--~~~~alvDtGat~~fis~~~a 38 (72)
T PF13975_consen 5 DPGLMYVPVSIGG--VQVKALVDTGATHNFISESLA 38 (72)
T ss_pred cCCEEEEEEEECC--EEEEEEEeCCCcceecCHHHH
Confidence 4689999999998 999999999999998876544
No 43
>PF13650 Asp_protease_2: Aspartyl protease
Probab=76.83 E-value=3.3 Score=33.14 Aligned_cols=29 Identities=10% Similarity=0.331 Sum_probs=23.9
Q ss_pred EEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 277 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 277 i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
+.|+|+++ .+++|||++.+.++++.++++
T Consensus 3 v~vng~~~-------~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-------RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-------EEEEcCCCCcEEECHHHHHHc
Confidence 56677654 499999999999999988766
No 44
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=76.45 E-value=9.6 Score=35.13 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=21.8
Q ss_pred CceEEEccCccCcccCHHHHHHHHHHh
Q 010195 290 GCTAILDSGTSVLAGPTTVVAQINHAI 316 (515)
Q Consensus 290 ~~~aivDSGtt~i~lP~~~~~~i~~~l 316 (515)
...+++|||++..++-.++.+.|.-..
T Consensus 45 ~i~vLfDSGSPTSfIr~di~~kL~L~~ 71 (177)
T PF12384_consen 45 PIKVLFDSGSPTSFIRSDIVEKLELPT 71 (177)
T ss_pred EEEEEEeCCCccceeehhhHHhhCCcc
Confidence 446999999999999999888774333
No 45
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=72.73 E-value=4.2 Score=33.70 Aligned_cols=29 Identities=17% Similarity=0.337 Sum_probs=23.5
Q ss_pred EEEEEecCCCCeEEEEEcCCCCCeeEeCCCC
Q 010195 92 YGEIGIGSPPQSFSVVFDTGSSNLWVPSSKC 122 (515)
Q Consensus 92 ~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C 122 (515)
+.+|.+.. +++++++||||+.+.|+...+
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSGGS
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccccc
Confidence 45677776 899999999999998876544
No 46
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=71.58 E-value=5.5 Score=32.57 Aligned_cols=30 Identities=13% Similarity=0.262 Sum_probs=25.4
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 276 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 276 ~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
.+.|+|+++. +++|||++...++.+.+.++
T Consensus 4 ~~~Ing~~i~-------~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-------FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-------EEEcCCcceEEeCHHHHHHh
Confidence 3678888764 99999999999999988765
No 47
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=71.43 E-value=6.8 Score=30.77 Aligned_cols=29 Identities=14% Similarity=0.250 Sum_probs=24.5
Q ss_pred EEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 277 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 277 i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
+.+++..+ .+++|||++..+++.+..+.+
T Consensus 13 ~~I~g~~~-------~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-------KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-------EEEEeCCCcceecCHHHHHHh
Confidence 56777665 399999999999999998877
No 48
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=65.81 E-value=10 Score=30.54 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=23.8
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 276 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 276 ~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
.+.+++.++ .+++|||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-------~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-------RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-------EEEEECCCCcEEcCHHHHHHc
Confidence 356776655 499999999999999877655
No 49
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=62.74 E-value=7.6 Score=34.22 Aligned_cols=91 Identities=22% Similarity=0.308 Sum_probs=49.1
Q ss_pred CceEEEEEEecCCCCeEEEEEcCCCCCeeEeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee--EEEEEEEe
Q 010195 88 DAQYYGEIGIGSPPQSFSVVFDTGSSNLWVPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ--ISGFFSQD 165 (515)
Q Consensus 88 ~~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D 165 (515)
....|++++|+. +++++++|||...+-+.. .|. ..|+....-+. ..-...+|-|. +-|.+..=
T Consensus 22 v~mLyI~~~ing--~~vkA~VDtGAQ~tims~-~~a--~r~gL~~lid~----------r~~g~a~GvG~~~i~G~Ih~~ 86 (124)
T PF09668_consen 22 VSMLYINCKING--VPVKAFVDTGAQSTIMSK-SCA--ERCGLMRLIDK----------RFAGVAKGVGTQKILGRIHSV 86 (124)
T ss_dssp ----EEEEEETT--EEEEEEEETT-SS-EEEH-HHH--HHTTGGGGEEG----------GG-EE-------EEEEEEEEE
T ss_pred cceEEEEEEECC--EEEEEEEeCCCCccccCH-HHH--HHcCChhhccc----------cccccccCCCcCceeEEEEEE
Confidence 457899999998 999999999999987754 332 24543221111 01122344454 67888888
Q ss_pred eeccceeeeccceEEEEEeeCCccccccccceeeecc
Q 010195 166 NVKIGDMIIKDQEFVEVTKEGLLPFLALQFDGILGLG 202 (515)
Q Consensus 166 ~v~lg~~~v~~~~fg~~~~~~~~~~~~~~~dGIlGLg 202 (515)
.+.+|+..++ ..|-+.. +...+=+|||-
T Consensus 87 ~l~ig~~~~~-~s~~Vle--------~~~~d~llGld 114 (124)
T PF09668_consen 87 QLKIGGLFFP-CSFTVLE--------DQDVDLLLGLD 114 (124)
T ss_dssp EEEETTEEEE-EEEEEET--------TSSSSEEEEHH
T ss_pred EEEECCEEEE-EEEEEeC--------CCCcceeeeHH
Confidence 8899885554 3443332 22235677773
No 50
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=62.26 E-value=1.4 Score=34.07 Aligned_cols=37 Identities=43% Similarity=0.862 Sum_probs=33.6
Q ss_pred ccccccceeeeecchhhhhhhhcCCCCCcccccCcce
Q 010195 321 IVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLC 357 (515)
Q Consensus 321 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c 357 (515)
.....|+.+++.|.+.+++.+.....|.++|...|.|
T Consensus 40 ~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 40 SLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 3567899999999999999999999999999999887
No 51
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=61.83 E-value=9.4 Score=30.98 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=24.3
Q ss_pred EEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 277 ILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 277 i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
+.+||.++ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-------~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-------VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-------EEEEECCCCeEEECHHHhhhc
Confidence 56777765 489999999999999988775
No 52
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=55.34 E-value=15 Score=30.17 Aligned_cols=27 Identities=19% Similarity=0.297 Sum_probs=21.8
Q ss_pred EEEecCCCCeEEEEEcCCCCCeeEeCCCC
Q 010195 94 EIGIGSPPQSFSVVFDTGSSNLWVPSSKC 122 (515)
Q Consensus 94 ~I~IGtP~Q~~~v~lDTGSs~~wV~~~~C 122 (515)
.+.|+. |.+.+++|||+.++-+.....
T Consensus 2 ~~~i~g--~~~~~llDTGAd~Tvi~~~~~ 28 (87)
T cd05482 2 TLYING--KLFEGLLDTGADVSIIAENDW 28 (87)
T ss_pred EEEECC--EEEEEEEccCCCCeEEccccc
Confidence 356664 999999999999999976543
No 53
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=53.39 E-value=7.5 Score=37.65 Aligned_cols=88 Identities=30% Similarity=0.448 Sum_probs=64.3
Q ss_pred ccceeeeecchhhhhhhhcCCCCCcccccCcceeeCCCcccccceeeeeecccCCCCCCCccccchhhhHHHHHHHHHHh
Q 010195 325 QCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVYNGSSYMSTGIETVVQHKTSNGSSINESTLCAFCEMIVFWIQMQLK 404 (515)
Q Consensus 325 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (515)
+|...+++|.+.|+..+.++.+|+.+|...++|.-... -...+..++ ....-|--|...+.+...-+.
T Consensus 78 ~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~~~~~------~~~~~~~~~------~~~~~C~~C~~~V~~~~~~l~ 145 (218)
T KOG1340|consen 78 ECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCSASAG------PVSEVFASQ------PAAGECELCRETVTEADTKLQ 145 (218)
T ss_pred HHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCCcccc------hhhhhhhhc------ccccccHHHHHHHHHHHHhcc
Confidence 89999999999999999999999999999999974110 001011111 124679999999999998888
Q ss_pred h-hhhHHHHHHHHhhhhccCC
Q 010195 405 Q-QKTKEAIFKYADKLCEVLP 424 (515)
Q Consensus 405 ~-~~~~~~~~~~~~~~c~~~~ 424 (515)
. +.++.++-.-..+-|..++
T Consensus 146 d~~~~k~~~~~~~~~~ck~l~ 166 (218)
T KOG1340|consen 146 DKPKTKGKIVSLLLKSCKSLP 166 (218)
T ss_pred cchhHHHHHHHHHHhhccCCc
Confidence 8 6666666666666664443
No 54
>PF07966 A1_Propeptide: A1 Propeptide ; InterPro: IPR012848 Most eukaryotic endopeptidases (MEROPS peptidase family A1) are synthesised with signal and propeptides. The animal pepsin-like endopeptidase propeptides form a distinct family of propeptides, which contain a conserved motif approximately 30 residues long. In pepsinogen A, the first 11 residues of the mature pepsin sequence are displaced by residues of the propeptide. The propeptide contains two helices that block the active site cleft, in particular the conserved Asp11 residue, in pepsin, hydrogen bonds to a conserved Arg residue in the propeptide. This hydrogen bond stabilises the propeptide conformation and is probably responsible for triggering the conversion of pepsinogen to pepsin under acidic conditions [, ]. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1AVF_Q 1HTR_P 3PSG_A 2PSG_A 3VCM_Q 1TZS_P.
Probab=52.62 E-value=13 Score=23.97 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=14.4
Q ss_pred eEEEeeeeecchhhhHHhhccc
Q 010195 43 LLRIQLKKRQLGINTINAARLI 64 (515)
Q Consensus 43 ~~~ipl~~~~~~~~~~~~~~~~ 64 (515)
.++|||+|.++.++.+++.+..
T Consensus 1 l~rIPL~K~kS~R~~L~e~g~~ 22 (29)
T PF07966_consen 1 LVRIPLKKFKSMRETLREKGTL 22 (29)
T ss_dssp -EEEEEEE---HHHHHHHTT-H
T ss_pred CEEEeccCCchHHHHHHHcCch
Confidence 3799999999999988876654
No 55
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=47.33 E-value=14 Score=30.46 Aligned_cols=27 Identities=22% Similarity=0.249 Sum_probs=21.5
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHH
Q 010195 276 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVV 309 (515)
Q Consensus 276 ~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~ 309 (515)
.+.+++..+ .+++|||++.+.++.+.+
T Consensus 9 ~v~i~g~~i-------~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 9 TVKINGKKI-------KALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEETTEEE-------EEEEETTBSSEEESSGGS
T ss_pred EEeECCEEE-------EEEEecCCCcceeccccc
Confidence 466677765 499999999999998654
No 56
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=46.51 E-value=78 Score=28.13 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=24.6
Q ss_pred ceEEEEEEecCCCCeEEEEEcCCCCCeeEeC
Q 010195 89 AQYYGEIGIGSPPQSFSVVFDTGSSNLWVPS 119 (515)
Q Consensus 89 ~~Y~~~I~IGtP~Q~~~v~lDTGSs~~wV~~ 119 (515)
..-.+.+.|.+ ++..+++|+|++..+|..
T Consensus 20 ~vi~g~~~I~~--~~~~vLiDSGAThsFIs~ 48 (135)
T PF08284_consen 20 DVITGTFLINS--IPASVLIDSGATHSFISS 48 (135)
T ss_pred CeEEEEEEecc--EEEEEEEecCCCcEEccH
Confidence 45677888888 999999999999988854
No 57
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=44.82 E-value=41 Score=32.24 Aligned_cols=30 Identities=10% Similarity=0.180 Sum_probs=25.7
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 276 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 276 ~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
...|||+.+. .+||||.|-+.++.+..+.+
T Consensus 109 ~~~VNGk~v~-------fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 109 NGRVNGKKVD-------FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEEECCEEEE-------EEEecCcceeecCHHHHHHh
Confidence 3678888774 89999999999999988765
No 58
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=44.34 E-value=27 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=22.3
Q ss_pred EEEEEecCCCCeEEEEEcCCCCCeeEeCC
Q 010195 92 YGEIGIGSPPQSFSVVFDTGSSNLWVPSS 120 (515)
Q Consensus 92 ~~~I~IGtP~Q~~~v~lDTGSs~~wV~~~ 120 (515)
...+.++.-..+++++|||||+...|...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34455555558999999999999888754
No 59
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=44.19 E-value=5.1 Score=38.79 Aligned_cols=43 Identities=30% Similarity=0.614 Sum_probs=37.9
Q ss_pred cCccccccccceeeeecchhhhhhhhcCCCCCcccccCcceee
Q 010195 317 GAEGIVSMQCKTVVFEYGNMIWEFLISGVQPETVCSDIGLCVY 359 (515)
Q Consensus 317 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~c~~ 359 (515)
+.-+++...|+.+|++|.+++...+..++.|.++|.++|.|.-
T Consensus 163 k~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~~ 205 (218)
T KOG1340|consen 163 KSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACPP 205 (218)
T ss_pred cCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCCc
Confidence 4445556679999999999999999999999999999999983
No 60
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=42.16 E-value=26 Score=28.97 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=19.5
Q ss_pred eEEEccCccCcccCHHHHHHHH
Q 010195 292 TAILDSGTSVLAGPTTVVAQIN 313 (515)
Q Consensus 292 ~aivDSGtt~i~lP~~~~~~i~ 313 (515)
.+.+|||++...+|...+.++-
T Consensus 12 ~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 12 KFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred EEEEecCCEEEeccHHHHhhhc
Confidence 5999999999999999888764
No 61
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=41.24 E-value=31 Score=30.44 Aligned_cols=30 Identities=13% Similarity=0.207 Sum_probs=23.4
Q ss_pred eEEEcCeEeeeecCCceEEEccCccCcccCHHHHHHH
Q 010195 276 DILIENSSTGFCEDGCTAILDSGTSVLAGPTTVVAQI 312 (515)
Q Consensus 276 ~i~v~~~~~~~~~~~~~aivDSGtt~i~lP~~~~~~i 312 (515)
.+.++|..+ .|+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~v-------kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-------KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-------EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-------EEEEeCCCCccccCHHHHHHc
Confidence 367788876 399999999999999988874
No 62
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=31.07 E-value=30 Score=30.42 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=18.6
Q ss_pred EEEccCcc-CcccCHHHHHHHH
Q 010195 293 AILDSGTS-VLAGPTTVVAQIN 313 (515)
Q Consensus 293 aivDSGtt-~i~lP~~~~~~i~ 313 (515)
.++|||.+ ++.+|.++++++.
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~~ 50 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKLG 50 (125)
T ss_pred eEEecCCceeEEeCHHHHHhcC
Confidence 58999999 9999999998763
No 63
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=23.33 E-value=82 Score=26.71 Aligned_cols=66 Identities=15% Similarity=0.230 Sum_probs=39.2
Q ss_pred EEEEecCCCC----eEEEEEcCCCCCee-EeCCCCCCCccccCCCCCCCCCCCceeecCceEEEEeccee-EEEEEEEee
Q 010195 93 GEIGIGSPPQ----SFSVVFDTGSSNLW-VPSSKCLFSISCYLHSRYRARLSRTYTKIGVPCKIHYGSGQ-ISGFFSQDN 166 (515)
Q Consensus 93 ~~I~IGtP~Q----~~~v~lDTGSs~~w-V~~~~C~~~~~C~~~~~y~ps~SsT~~~~~~~~~i~Yg~gs-~~G~~~~D~ 166 (515)
+++.+..|.| ++.+++|||.+..- ++...-. .-...+.. .....-++|. ..-....++
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~~~a~-------~lgl~~~~---------~~~~~tA~G~~~~~~v~~~~ 65 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPPDIVN-------KLGLPELD---------QRRVYLADGREVLTDVAKAS 65 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCHHHHH-------HcCCCccc---------CcEEEecCCcEEEEEEEEEE
Confidence 5678888733 68899999998764 4432211 11112211 1234445665 455567889
Q ss_pred eccceeee
Q 010195 167 VKIGDMII 174 (515)
Q Consensus 167 v~lg~~~v 174 (515)
+.++|...
T Consensus 66 v~igg~~~ 73 (107)
T TIGR03698 66 IIINGLEI 73 (107)
T ss_pred EEECCEEE
Confidence 99998765
Done!