Query 010196
Match_columns 515
No_of_seqs 249 out of 2522
Neff 10.4
Searched_HMMs 46136
Date Thu Mar 28 22:10:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010196.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010196hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0330 ATP-dependent RNA heli 100.0 2.3E-70 5.1E-75 492.0 33.0 380 34-482 67-446 (476)
2 KOG0338 ATP-dependent RNA heli 100.0 1.7E-67 3.6E-72 488.3 30.9 399 29-494 183-587 (691)
3 KOG0331 ATP-dependent RNA heli 100.0 1.6E-66 3.4E-71 499.2 31.4 360 29-455 93-461 (519)
4 KOG0350 DEAD-box ATP-dependent 100.0 1.3E-64 2.9E-69 468.4 33.1 463 14-501 114-601 (620)
5 COG0513 SrmB Superfamily II DN 100.0 6.6E-63 1.4E-67 496.5 38.4 356 35-457 36-396 (513)
6 KOG0345 ATP-dependent RNA heli 100.0 4.4E-63 9.6E-68 455.3 33.7 357 34-454 12-375 (567)
7 KOG0342 ATP-dependent RNA heli 100.0 7.3E-63 1.6E-67 457.1 31.7 351 35-451 89-446 (543)
8 KOG0343 RNA Helicase [RNA proc 100.0 1.1E-62 2.4E-67 460.4 32.7 354 35-453 76-433 (758)
9 KOG0333 U5 snRNP-like RNA heli 100.0 9.3E-63 2E-67 458.5 28.8 389 18-455 241-637 (673)
10 PRK04837 ATP-dependent RNA hel 100.0 4.7E-61 1E-65 478.9 39.2 362 27-455 8-375 (423)
11 KOG0340 ATP-dependent RNA heli 100.0 6.7E-62 1.5E-66 432.4 29.4 360 34-461 13-380 (442)
12 KOG0328 Predicted ATP-dependen 100.0 3E-62 6.4E-67 421.3 26.0 360 22-456 27-387 (400)
13 PTZ00110 helicase; Provisional 100.0 2.5E-60 5.3E-65 482.7 38.2 369 15-456 123-498 (545)
14 PRK04537 ATP-dependent RNA hel 100.0 9.5E-60 2E-64 479.8 37.0 356 35-455 16-377 (572)
15 PRK10590 ATP-dependent RNA hel 100.0 1.8E-59 3.8E-64 470.2 35.3 355 34-456 7-366 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 7.7E-59 1.7E-63 468.0 37.5 351 35-455 11-362 (460)
17 PLN00206 DEAD-box ATP-dependen 100.0 8.3E-59 1.8E-63 470.5 37.7 375 18-469 117-499 (518)
18 PRK11634 ATP-dependent RNA hel 100.0 2.7E-58 5.8E-63 471.3 41.6 353 34-455 12-365 (629)
19 PRK11192 ATP-dependent RNA hel 100.0 1.1E-58 2.3E-63 464.3 36.2 354 34-455 7-365 (434)
20 KOG0346 RNA helicase [RNA proc 100.0 5.3E-59 1.1E-63 424.7 29.4 384 34-483 25-458 (569)
21 KOG0347 RNA helicase [RNA proc 100.0 6E-60 1.3E-64 441.9 22.5 389 15-472 174-601 (731)
22 KOG0336 ATP-dependent RNA heli 100.0 3.6E-59 7.7E-64 421.9 26.3 368 16-456 213-586 (629)
23 KOG0348 ATP-dependent RNA heli 100.0 9.6E-59 2.1E-63 432.5 28.9 376 23-450 132-562 (708)
24 PRK01297 ATP-dependent RNA hel 100.0 1E-56 2.2E-61 453.5 40.5 358 34-456 93-456 (475)
25 KOG0326 ATP-dependent RNA heli 100.0 7.4E-59 1.6E-63 407.0 21.4 371 19-460 77-447 (459)
26 KOG0335 ATP-dependent RNA heli 100.0 5.1E-57 1.1E-61 425.8 27.3 357 34-454 80-456 (482)
27 PTZ00424 helicase 45; Provisio 100.0 5E-55 1.1E-59 435.2 38.4 377 3-455 10-387 (401)
28 KOG0339 ATP-dependent RNA heli 100.0 4.4E-55 9.4E-60 405.4 29.5 369 15-456 216-589 (731)
29 KOG0341 DEAD-box protein abstr 100.0 1.7E-55 3.7E-60 395.5 16.6 354 15-443 163-529 (610)
30 KOG0334 RNA helicase [RNA proc 100.0 5.8E-54 1.2E-58 432.9 24.5 368 15-455 358-733 (997)
31 KOG0332 ATP-dependent RNA heli 100.0 2.5E-53 5.4E-58 380.0 23.3 360 20-454 88-456 (477)
32 PLN03137 ATP-dependent DNA hel 100.0 4.8E-50 1E-54 415.0 38.0 385 35-496 444-844 (1195)
33 TIGR03817 DECH_helic helicase/ 100.0 1.7E-50 3.7E-55 421.9 34.8 352 35-453 21-399 (742)
34 TIGR00614 recQ_fam ATP-depende 100.0 1.4E-50 3.1E-55 406.9 32.4 363 45-497 6-375 (470)
35 KOG0327 Translation initiation 100.0 5.1E-51 1.1E-55 368.6 24.6 362 19-456 23-384 (397)
36 KOG0337 ATP-dependent RNA heli 100.0 2E-50 4.4E-55 366.8 24.7 380 34-481 27-421 (529)
37 PRK11057 ATP-dependent DNA hel 100.0 3.6E-49 7.9E-54 406.7 36.2 371 34-496 8-384 (607)
38 KOG0344 ATP-dependent RNA heli 100.0 6.8E-50 1.5E-54 379.8 23.4 372 18-455 128-508 (593)
39 KOG4284 DEAD box protein [Tran 100.0 1E-49 2.3E-54 379.4 21.8 347 35-450 32-388 (980)
40 TIGR01389 recQ ATP-dependent D 100.0 2E-47 4.4E-52 395.4 35.1 367 41-497 3-374 (591)
41 COG0514 RecQ Superfamily II DN 100.0 1E-45 2.2E-50 362.5 29.8 369 39-496 5-379 (590)
42 PRK13767 ATP-dependent helicas 100.0 2.9E-45 6.2E-50 390.5 35.6 349 35-446 18-403 (876)
43 PRK02362 ski2-like helicase; P 100.0 4.9E-45 1.1E-49 385.7 32.2 341 29-443 3-398 (737)
44 COG1201 Lhr Lhr-like helicases 100.0 5.7E-44 1.2E-48 362.9 30.4 342 34-441 7-361 (814)
45 TIGR00580 mfd transcription-re 100.0 5.1E-43 1.1E-47 368.8 34.3 328 36-441 437-769 (926)
46 PRK00254 ski2-like helicase; P 100.0 2.4E-43 5.1E-48 372.0 31.2 334 35-443 8-389 (720)
47 PRK10917 ATP-dependent DNA hel 100.0 5.1E-42 1.1E-46 357.3 33.1 325 37-440 249-587 (681)
48 PRK01172 ski2-like helicase; P 100.0 2.2E-42 4.7E-47 363.3 30.1 343 35-451 8-388 (674)
49 TIGR00643 recG ATP-dependent D 100.0 9.1E-42 2E-46 353.3 34.2 327 37-439 223-563 (630)
50 KOG0329 ATP-dependent RNA heli 100.0 7.1E-44 1.5E-48 303.4 15.0 312 29-444 44-357 (387)
51 TIGR02621 cas3_GSU0051 CRISPR- 100.0 5.1E-42 1.1E-46 350.7 30.5 329 40-441 5-390 (844)
52 PRK10689 transcription-repair 100.0 5.1E-41 1.1E-45 361.2 33.9 327 36-441 587-918 (1147)
53 PRK09751 putative ATP-dependen 100.0 1.2E-40 2.7E-45 359.7 32.6 306 74-438 1-381 (1490)
54 COG1111 MPH1 ERCC4-like helica 100.0 3.2E-38 7E-43 295.8 33.7 322 49-443 14-482 (542)
55 PRK09401 reverse gyrase; Revie 100.0 8.9E-38 1.9E-42 337.0 35.2 319 39-414 69-410 (1176)
56 COG1202 Superfamily II helicas 100.0 1.1E-38 2.3E-43 301.1 21.1 346 25-442 192-553 (830)
57 TIGR01970 DEAH_box_HrpB ATP-de 100.0 5.4E-38 1.2E-42 327.6 27.9 306 62-447 10-341 (819)
58 PRK14701 reverse gyrase; Provi 100.0 4.1E-38 8.8E-43 346.3 27.5 362 37-453 66-467 (1638)
59 KOG0352 ATP-dependent DNA heli 100.0 1.3E-38 2.8E-43 290.3 19.4 382 38-495 6-410 (641)
60 PHA02653 RNA helicase NPH-II; 100.0 6.1E-38 1.3E-42 319.6 26.4 323 50-450 160-522 (675)
61 PRK12898 secA preprotein trans 100.0 3.2E-37 7E-42 309.0 29.9 353 46-443 100-587 (656)
62 PRK11664 ATP-dependent RNA hel 100.0 9.2E-38 2E-42 326.8 26.3 306 60-445 11-342 (812)
63 PHA02558 uvsW UvsW helicase; P 100.0 2.2E-37 4.9E-42 312.8 27.5 307 49-439 113-449 (501)
64 COG1204 Superfamily II helicas 100.0 1.6E-37 3.4E-42 320.7 25.9 336 35-439 16-405 (766)
65 TIGR01054 rgy reverse gyrase. 100.0 1.9E-36 4.1E-41 327.2 35.4 318 37-413 65-408 (1171)
66 TIGR01587 cas3_core CRISPR-ass 100.0 2.1E-37 4.6E-42 303.3 25.5 315 71-443 1-337 (358)
67 PRK09200 preprotein translocas 100.0 4.6E-36 1E-40 307.2 32.0 357 46-443 75-542 (790)
68 KOG0351 ATP-dependent DNA heli 100.0 3.3E-37 7.3E-42 320.1 23.0 338 40-454 254-604 (941)
69 TIGR03714 secA2 accessory Sec 100.0 7.3E-36 1.6E-40 302.7 31.6 355 51-443 69-538 (762)
70 COG1205 Distinct helicase fami 100.0 5.3E-36 1.2E-40 313.9 28.5 346 35-442 55-422 (851)
71 TIGR00963 secA preprotein tran 100.0 9.8E-35 2.1E-39 292.5 34.9 353 46-443 53-518 (745)
72 KOG0349 Putative DEAD-box RNA 100.0 4.1E-36 8.9E-41 274.4 21.4 288 101-443 286-616 (725)
73 TIGR00603 rad25 DNA repair hel 100.0 1.3E-35 2.8E-40 301.0 26.6 312 50-446 255-611 (732)
74 PRK13766 Hef nuclease; Provisi 100.0 6.9E-35 1.5E-39 312.6 30.4 324 48-444 13-481 (773)
75 KOG0354 DEAD-box like helicase 100.0 2.7E-35 5.8E-40 292.4 24.4 333 47-450 59-537 (746)
76 TIGR03158 cas3_cyano CRISPR-as 100.0 5.4E-34 1.2E-38 275.7 28.4 311 54-427 1-357 (357)
77 KOG0952 DNA/RNA helicase MER3/ 100.0 1.5E-33 3.2E-38 283.2 24.0 345 45-453 105-502 (1230)
78 COG1200 RecG RecG-like helicas 100.0 1.8E-32 3.8E-37 268.5 28.1 328 38-443 251-592 (677)
79 PRK04914 ATP-dependent helicas 100.0 2.1E-32 4.6E-37 287.3 30.2 124 317-442 478-603 (956)
80 KOG0353 ATP-dependent DNA heli 100.0 3.1E-33 6.7E-38 251.7 19.0 342 35-450 78-475 (695)
81 PRK09694 helicase Cas3; Provis 100.0 8.3E-31 1.8E-35 273.7 32.7 336 49-431 285-664 (878)
82 COG1061 SSL2 DNA or RNA helica 100.0 1.4E-31 3E-36 265.2 24.3 296 50-428 36-375 (442)
83 PRK05580 primosome assembly pr 100.0 6.4E-31 1.4E-35 272.9 29.2 320 50-441 144-548 (679)
84 PRK11131 ATP-dependent RNA hel 100.0 2.5E-31 5.4E-36 282.9 25.5 301 63-446 83-415 (1294)
85 PRK13104 secA preprotein trans 100.0 1E-29 2.2E-34 259.8 31.5 356 46-443 79-588 (896)
86 KOG0951 RNA helicase BRR2, DEA 100.0 3.9E-30 8.4E-35 262.0 23.2 353 35-453 296-713 (1674)
87 COG1197 Mfd Transcription-repa 100.0 4.1E-29 8.8E-34 258.4 29.5 330 35-442 579-913 (1139)
88 PRK12904 preprotein translocas 100.0 6.3E-29 1.4E-33 254.0 30.2 355 46-443 78-574 (830)
89 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.1E-29 2.4E-34 271.5 25.1 320 46-446 60-408 (1283)
90 TIGR00595 priA primosomal prot 100.0 1.7E-29 3.7E-34 253.0 24.5 289 73-439 1-378 (505)
91 PRK12906 secA preprotein trans 100.0 1E-28 2.2E-33 251.4 26.7 356 46-443 77-554 (796)
92 PRK11448 hsdR type I restricti 100.0 3.7E-28 8.1E-33 261.2 27.1 315 50-431 413-802 (1123)
93 PRK12899 secA preprotein trans 100.0 4.3E-27 9.3E-32 240.2 33.1 146 34-211 68-229 (970)
94 KOG0947 Cytoplasmic exosomal R 100.0 7.4E-28 1.6E-32 239.8 23.8 314 45-442 293-723 (1248)
95 cd00268 DEADc DEAD-box helicas 100.0 8.3E-28 1.8E-32 216.2 21.4 196 35-294 6-202 (203)
96 PRK13107 preprotein translocas 100.0 4.2E-27 9E-32 240.0 28.3 356 46-443 79-592 (908)
97 PLN03142 Probable chromatin-re 100.0 2E-27 4.4E-32 250.7 24.7 359 50-442 169-599 (1033)
98 COG4581 Superfamily II RNA hel 100.0 9.7E-28 2.1E-32 248.2 21.2 323 40-442 110-537 (1041)
99 COG4098 comFA Superfamily II D 100.0 1.5E-26 3.3E-31 206.3 23.8 308 50-442 97-416 (441)
100 KOG0948 Nuclear exosomal RNA h 100.0 1.2E-27 2.5E-32 232.8 14.7 309 50-442 129-539 (1041)
101 KOG0950 DNA polymerase theta/e 99.9 7.9E-27 1.7E-31 234.1 19.1 354 35-454 207-623 (1008)
102 TIGR01407 dinG_rel DnaQ family 99.9 5.6E-24 1.2E-28 228.2 33.7 174 32-211 228-454 (850)
103 KOG0385 Chromatin remodeling c 99.9 1.4E-24 3.1E-29 212.3 25.1 363 49-443 166-600 (971)
104 COG1203 CRISPR-associated heli 99.9 1.6E-24 3.4E-29 227.6 22.4 343 50-442 195-550 (733)
105 COG1110 Reverse gyrase [DNA re 99.9 6.9E-23 1.5E-27 207.0 30.6 391 46-488 79-605 (1187)
106 PF00270 DEAD: DEAD/DEAH box h 99.9 1.9E-24 4.2E-29 188.5 16.6 148 52-226 1-148 (169)
107 COG0556 UvrB Helicase subunit 99.9 3.2E-23 6.9E-28 195.7 24.3 163 268-442 388-557 (663)
108 PRK12900 secA preprotein trans 99.9 8E-24 1.7E-28 217.0 22.0 126 314-444 578-713 (1025)
109 TIGR00631 uvrb excinuclease AB 99.9 7.7E-22 1.7E-26 202.7 33.4 131 316-450 424-561 (655)
110 COG1198 PriA Primosomal protei 99.9 4.7E-23 1E-27 209.3 20.3 317 50-443 198-604 (730)
111 TIGR00348 hsdR type I site-spe 99.9 4E-22 8.7E-27 207.3 27.7 307 51-429 239-634 (667)
112 COG1643 HrpA HrpA-like helicas 99.9 1.5E-22 3.3E-27 208.7 21.0 305 63-445 59-390 (845)
113 COG4096 HsdR Type I site-speci 99.9 1E-22 2.3E-27 202.7 19.0 303 49-429 164-525 (875)
114 PRK07246 bifunctional ATP-depe 99.9 5E-21 1.1E-25 202.4 31.5 389 46-453 242-796 (820)
115 PRK05298 excinuclease ABC subu 99.9 6.1E-20 1.3E-24 190.3 38.5 152 316-474 428-595 (652)
116 PRK12326 preprotein translocas 99.9 4.1E-21 8.9E-26 191.8 27.8 355 46-443 75-548 (764)
117 KOG0922 DEAH-box RNA helicase 99.9 5.2E-22 1.1E-26 193.3 18.6 307 62-446 59-394 (674)
118 KOG0384 Chromodomain-helicase 99.9 2.1E-22 4.6E-27 206.5 15.3 372 49-443 369-812 (1373)
119 KOG1123 RNA polymerase II tran 99.9 1.2E-21 2.5E-26 183.3 17.5 315 49-448 301-659 (776)
120 KOG0387 Transcription-coupled 99.9 2.1E-21 4.6E-26 191.2 19.8 369 49-442 204-658 (923)
121 PRK13103 secA preprotein trans 99.9 3.3E-20 7.2E-25 190.0 26.3 355 46-443 79-592 (913)
122 TIGR03117 cas_csf4 CRISPR-asso 99.9 2.1E-19 4.5E-24 181.7 29.5 85 55-141 2-89 (636)
123 KOG0390 DNA repair protein, SN 99.9 4E-20 8.6E-25 186.9 24.2 354 50-438 238-701 (776)
124 KOG0389 SNF2 family DNA-depend 99.9 1.9E-20 4E-25 184.4 21.0 373 47-446 397-892 (941)
125 PRK08074 bifunctional ATP-depe 99.8 3.5E-19 7.6E-24 192.0 27.1 159 47-211 255-469 (928)
126 PRK12903 secA preprotein trans 99.8 1E-18 2.2E-23 177.3 26.3 355 46-443 75-540 (925)
127 CHL00122 secA preprotein trans 99.8 3.2E-18 6.9E-23 174.8 28.0 131 46-210 73-209 (870)
128 KOG0949 Predicted helicase, DE 99.8 1.2E-19 2.5E-24 182.2 17.0 147 50-225 511-660 (1330)
129 KOG0923 mRNA splicing factor A 99.8 3.4E-19 7.4E-24 172.2 19.3 299 68-444 279-608 (902)
130 KOG0920 ATP-dependent RNA heli 99.8 1.6E-18 3.4E-23 178.5 23.4 320 52-446 175-548 (924)
131 KOG0392 SNF2 family DNA-depend 99.8 4.4E-19 9.6E-24 181.8 19.0 364 50-443 975-1455(1549)
132 KOG1000 Chromatin remodeling p 99.8 2.4E-18 5.2E-23 161.1 19.4 327 49-454 197-617 (689)
133 PRK11747 dinG ATP-dependent DN 99.8 2.8E-17 6.1E-22 171.9 28.9 90 47-140 23-120 (697)
134 PRK12902 secA preprotein trans 99.8 2.5E-17 5.5E-22 167.9 27.4 131 46-210 82-218 (939)
135 COG4889 Predicted helicase [Ge 99.8 3.2E-19 6.9E-24 177.1 13.0 367 38-430 149-573 (1518)
136 KOG0924 mRNA splicing factor A 99.8 4.7E-18 1E-22 164.8 20.7 306 52-442 358-697 (1042)
137 KOG0926 DEAH-box RNA helicase 99.8 2.3E-18 5E-23 169.7 17.7 317 62-443 264-705 (1172)
138 COG1199 DinG Rad3-related DNA 99.8 1.4E-17 3E-22 175.9 23.8 78 44-124 9-86 (654)
139 smart00487 DEXDc DEAD-like hel 99.8 1.1E-17 2.4E-22 150.0 18.2 187 45-297 3-191 (201)
140 cd00079 HELICc Helicase superf 99.8 2.5E-18 5.4E-23 143.0 12.4 118 318-438 12-131 (131)
141 KOG0953 Mitochondrial RNA heli 99.8 3.8E-18 8.2E-23 162.1 14.9 278 70-453 192-487 (700)
142 PF00271 Helicase_C: Helicase 99.7 3.4E-18 7.4E-23 127.6 7.6 77 351-430 2-78 (78)
143 TIGR00604 rad3 DNA repair heli 99.7 1.2E-16 2.6E-21 168.6 21.8 79 46-125 6-84 (705)
144 KOG4150 Predicted ATP-dependen 99.7 1.5E-17 3.3E-22 158.2 12.1 337 42-441 278-639 (1034)
145 KOG0925 mRNA splicing factor A 99.7 2.5E-16 5.5E-21 147.4 18.8 329 21-442 24-387 (699)
146 KOG0386 Chromatin remodeling c 99.7 5.6E-17 1.2E-21 164.0 13.8 360 49-442 393-836 (1157)
147 PRK12901 secA preprotein trans 99.7 1.7E-15 3.6E-20 156.4 24.4 124 315-443 609-742 (1112)
148 KOG0391 SNF2 family DNA-depend 99.7 1.3E-15 2.9E-20 155.4 21.5 132 319-453 1261-1396(1958)
149 KOG0951 RNA helicase BRR2, DEA 99.7 8.4E-16 1.8E-20 158.5 19.0 325 50-453 1143-1505(1674)
150 KOG0388 SNF2 family DNA-depend 99.7 2.3E-15 5E-20 146.8 18.3 125 316-443 1026-1155(1185)
151 PF04851 ResIII: Type III rest 99.7 4.1E-16 8.9E-21 137.9 10.0 147 50-213 3-162 (184)
152 cd00046 DEXDc DEAD-like helica 99.6 7.6E-15 1.7E-19 123.7 16.6 121 70-215 1-121 (144)
153 KOG1002 Nucleotide excision re 99.6 1.8E-14 4E-19 135.3 18.9 124 318-444 620-751 (791)
154 smart00490 HELICc helicase sup 99.6 2.5E-15 5.5E-20 113.5 8.0 81 347-430 2-82 (82)
155 TIGR02562 cas3_yersinia CRISPR 99.6 1.4E-13 3.1E-18 143.0 21.6 339 51-432 409-882 (1110)
156 PRK14873 primosome assembly pr 99.6 5.7E-14 1.2E-18 144.5 17.7 105 72-208 163-268 (665)
157 KOG4439 RNA polymerase II tran 99.5 1.3E-13 2.9E-18 134.9 15.9 105 331-438 745-852 (901)
158 PF06862 DUF1253: Protein of u 99.5 1.7E-11 3.8E-16 118.4 27.3 339 96-453 32-426 (442)
159 smart00488 DEXDc2 DEAD-like he 99.5 1.5E-13 3.1E-18 128.8 12.7 79 46-125 5-85 (289)
160 smart00489 DEXDc3 DEAD-like he 99.5 1.5E-13 3.1E-18 128.8 12.7 79 46-125 5-85 (289)
161 COG0553 HepA Superfamily II DN 99.5 1.1E-12 2.4E-17 144.6 17.5 123 318-443 692-823 (866)
162 KOG1015 Transcription regulato 99.4 4.8E-12 1E-16 127.6 17.6 121 318-438 1126-1271(1567)
163 COG0653 SecA Preprotein transl 99.4 1E-11 2.2E-16 127.1 17.6 355 46-443 77-546 (822)
164 COG0610 Type I site-specific r 99.4 8.9E-11 1.9E-15 126.6 24.5 114 69-209 273-388 (962)
165 PF02399 Herpes_ori_bp: Origin 99.3 1.4E-10 3.1E-15 118.0 21.9 291 70-443 50-389 (824)
166 PF07652 Flavi_DEAD: Flaviviru 99.3 1.9E-11 4.1E-16 98.2 10.0 105 68-209 3-107 (148)
167 PF00176 SNF2_N: SNF2 family N 99.2 2.2E-11 4.7E-16 116.6 9.0 130 54-209 1-146 (299)
168 KOG2340 Uncharacterized conser 99.2 6.7E-10 1.5E-14 106.1 17.9 381 49-452 215-678 (698)
169 PF07517 SecA_DEAD: SecA DEAD- 99.1 1.9E-09 4.1E-14 98.2 12.5 131 46-210 74-210 (266)
170 KOG0921 Dosage compensation co 99.0 1.8E-09 4E-14 109.0 12.5 113 332-445 643-777 (1282)
171 KOG1016 Predicted DNA helicase 99.0 1.4E-08 3E-13 101.2 16.2 114 333-446 720-851 (1387)
172 KOG1133 Helicase of the DEAD s 99.0 1.3E-07 2.8E-12 93.8 21.2 107 332-441 629-779 (821)
173 KOG0952 DNA/RNA helicase MER3/ 98.8 6.8E-10 1.5E-14 114.2 0.1 131 50-209 927-1058(1230)
174 PRK15483 type III restriction- 98.6 1.9E-07 4.1E-12 98.5 11.6 72 385-456 501-582 (986)
175 PF13307 Helicase_C_2: Helicas 98.6 6.7E-08 1.5E-12 83.1 6.8 107 331-441 8-149 (167)
176 PF13086 AAA_11: AAA domain; P 98.6 8E-08 1.7E-12 88.4 6.4 68 51-123 2-75 (236)
177 KOG1132 Helicase of the DEAD s 98.6 2.2E-07 4.9E-12 94.7 9.2 162 46-211 18-261 (945)
178 KOG1001 Helicase-like transcri 98.4 9.1E-07 2E-11 91.3 8.2 101 334-437 541-643 (674)
179 KOG1802 RNA helicase nonsense 98.3 2.2E-06 4.7E-11 84.8 7.5 86 42-138 402-487 (935)
180 TIGR00596 rad1 DNA repair prot 98.2 8.5E-06 1.8E-10 86.2 12.0 52 172-224 7-58 (814)
181 PF02562 PhoH: PhoH-like prote 98.2 1.8E-06 3.9E-11 75.6 5.1 59 49-113 3-61 (205)
182 PF13604 AAA_30: AAA domain; P 98.1 7.7E-06 1.7E-10 72.3 7.9 65 50-120 1-65 (196)
183 PF12340 DUF3638: Protein of u 98.1 1.5E-05 3.3E-10 70.4 9.2 74 47-126 21-94 (229)
184 KOG1131 RNA polymerase II tran 98.1 2.4E-05 5.2E-10 75.5 10.7 79 46-124 12-90 (755)
185 COG3587 Restriction endonuclea 98.1 0.0006 1.3E-08 70.2 20.3 71 385-455 483-566 (985)
186 PF13245 AAA_19: Part of AAA d 98.1 2.1E-05 4.5E-10 57.3 7.3 53 69-121 10-62 (76)
187 KOG1803 DNA helicase [Replicat 98.0 6.9E-06 1.5E-10 80.9 6.0 67 49-122 184-250 (649)
188 PF09848 DUF2075: Uncharacteri 98.0 2.4E-05 5.2E-10 76.3 8.6 95 71-211 3-97 (352)
189 TIGR00376 DNA helicase, putati 97.9 5.3E-05 1.1E-09 79.2 10.8 68 50-124 157-224 (637)
190 PF13872 AAA_34: P-loop contai 97.9 4.5E-05 9.7E-10 70.0 8.2 133 50-211 37-186 (303)
191 smart00492 HELICc3 helicase su 97.8 9.7E-05 2.1E-09 61.1 8.2 73 368-440 30-136 (141)
192 smart00491 HELICc2 helicase su 97.7 0.00011 2.4E-09 61.0 7.3 68 373-440 32-137 (142)
193 PRK10536 hypothetical protein; 97.7 6.5E-05 1.4E-09 67.8 6.4 61 46-112 55-115 (262)
194 PF00580 UvrD-helicase: UvrD/R 97.7 0.00012 2.6E-09 70.5 8.0 70 51-126 1-70 (315)
195 PRK10875 recD exonuclease V su 97.5 0.00047 1E-08 71.4 10.1 69 52-125 154-223 (615)
196 TIGR01447 recD exodeoxyribonuc 97.5 0.00062 1.3E-08 70.3 10.2 67 53-124 148-216 (586)
197 KOG1805 DNA replication helica 97.4 0.0011 2.4E-08 69.3 10.6 152 35-210 658-809 (1100)
198 TIGR01075 uvrD DNA helicase II 97.4 0.00065 1.4E-08 72.9 9.1 72 49-126 3-74 (715)
199 PRK10919 ATP-dependent DNA hel 97.4 0.00055 1.2E-08 72.5 8.2 71 50-126 2-72 (672)
200 TIGR01448 recD_rel helicase, p 97.3 0.0018 3.9E-08 69.0 11.1 67 45-118 319-385 (720)
201 PRK11773 uvrD DNA-dependent he 97.3 0.00077 1.7E-08 72.3 8.4 71 50-126 9-79 (721)
202 PRK12723 flagellar biosynthesi 97.2 0.0029 6.2E-08 61.7 11.1 61 69-132 174-236 (388)
203 PRK06526 transposase; Provisio 97.2 0.0014 3E-08 60.3 8.3 56 22-94 68-123 (254)
204 PRK11054 helD DNA helicase IV; 97.2 0.002 4.4E-08 67.8 9.8 82 49-136 195-276 (684)
205 COG3421 Uncharacterized protei 97.1 0.0047 1E-07 61.4 11.3 118 74-211 2-126 (812)
206 KOG0383 Predicted helicase [Ge 97.1 5.8E-05 1.3E-09 77.3 -1.8 79 316-398 613-696 (696)
207 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0056 1.2E-07 65.5 12.8 61 50-117 352-412 (744)
208 PF13401 AAA_22: AAA domain; P 97.1 0.0078 1.7E-07 49.3 10.8 21 69-89 4-24 (131)
209 PRK13889 conjugal transfer rel 97.0 0.0054 1.2E-07 66.8 11.8 63 46-116 343-405 (988)
210 TIGR01074 rep ATP-dependent DN 97.0 0.0022 4.7E-08 68.5 8.7 70 51-126 2-71 (664)
211 PF13871 Helicase_C_4: Helicas 97.0 0.0017 3.7E-08 59.6 6.7 79 375-453 51-141 (278)
212 PRK08181 transposase; Validate 97.0 0.004 8.7E-08 57.6 9.2 45 68-117 105-149 (269)
213 PRK04296 thymidine kinase; Pro 97.0 0.0014 2.9E-08 57.8 5.9 37 69-109 2-38 (190)
214 PF14617 CMS1: U3-containing 9 97.0 0.0023 4.9E-08 58.0 6.9 86 100-207 125-211 (252)
215 KOG0298 DEAD box-containing he 97.0 0.0017 3.7E-08 69.7 7.0 98 68-188 373-484 (1394)
216 TIGR01073 pcrA ATP-dependent D 96.9 0.0024 5.3E-08 68.7 7.5 72 49-126 3-74 (726)
217 KOG0989 Replication factor C, 96.9 0.0037 8.1E-08 57.2 7.4 36 54-89 40-77 (346)
218 PRK13826 Dtr system oriT relax 96.8 0.014 3.1E-07 64.1 12.9 75 35-117 367-441 (1102)
219 COG1484 DnaC DNA replication p 96.8 0.0065 1.4E-07 56.0 8.6 51 67-122 103-153 (254)
220 cd00009 AAA The AAA+ (ATPases 96.6 0.013 2.8E-07 48.9 8.8 19 69-87 19-37 (151)
221 PF05970 PIF1: PIF1-like helic 96.6 0.0052 1.1E-07 60.2 7.1 59 51-113 2-62 (364)
222 PRK06921 hypothetical protein; 96.6 0.017 3.7E-07 53.7 9.7 46 68-117 116-161 (266)
223 PRK14722 flhF flagellar biosyn 96.5 0.014 2.9E-07 56.6 8.8 27 68-94 136-162 (374)
224 COG1875 NYN ribonuclease and A 96.5 0.0075 1.6E-07 56.6 6.5 66 46-114 224-289 (436)
225 PF03354 Terminase_1: Phage Te 96.4 0.011 2.4E-07 60.2 8.0 75 53-127 1-80 (477)
226 TIGR02785 addA_Gpos recombinat 96.4 0.02 4.3E-07 65.2 10.6 124 51-208 2-126 (1232)
227 PF00448 SRP54: SRP54-type pro 96.3 0.016 3.5E-07 51.1 7.8 60 71-136 3-63 (196)
228 PRK05707 DNA polymerase III su 96.3 0.032 6.9E-07 53.5 10.1 39 50-88 3-41 (328)
229 PRK14974 cell division protein 96.2 0.05 1.1E-06 52.1 10.8 35 70-108 141-175 (336)
230 cd01124 KaiC KaiC is a circadi 96.1 0.079 1.7E-06 46.4 11.1 48 72-124 2-49 (187)
231 PRK07952 DNA replication prote 96.1 0.03 6.4E-07 51.1 8.4 40 70-114 100-139 (244)
232 PF00308 Bac_DnaA: Bacterial d 96.1 0.063 1.4E-06 48.4 10.5 49 70-121 35-83 (219)
233 COG2256 MGS1 ATPase related to 96.1 0.035 7.5E-07 53.1 8.8 19 70-88 49-67 (436)
234 smart00382 AAA ATPases associa 96.0 0.0057 1.2E-07 50.6 3.1 41 69-113 2-42 (148)
235 cd01120 RecA-like_NTPases RecA 96.0 0.17 3.7E-06 42.9 12.4 38 72-113 2-39 (165)
236 PRK06893 DNA replication initi 95.9 0.043 9.2E-07 49.9 8.8 23 70-92 40-62 (229)
237 TIGR03499 FlhF flagellar biosy 95.9 0.023 4.9E-07 53.5 7.1 25 69-93 194-218 (282)
238 COG1435 Tdk Thymidine kinase [ 95.8 0.015 3.3E-07 49.8 4.9 38 69-110 4-41 (201)
239 COG1419 FlhF Flagellar GTP-bin 95.8 0.039 8.5E-07 53.2 8.2 76 68-146 202-277 (407)
240 PRK05973 replicative DNA helic 95.8 0.041 8.8E-07 49.8 7.7 85 35-124 25-114 (237)
241 COG1444 Predicted P-loop ATPas 95.8 0.11 2.3E-06 54.5 11.7 92 35-130 199-290 (758)
242 PHA03333 putative ATPase subun 95.7 0.13 2.9E-06 53.0 11.7 73 51-127 170-242 (752)
243 PRK08769 DNA polymerase III su 95.6 0.088 1.9E-06 50.1 9.8 40 49-88 3-45 (319)
244 TIGR02760 TraI_TIGR conjugativ 95.6 0.88 1.9E-05 54.4 19.8 65 50-120 429-493 (1960)
245 PRK14956 DNA polymerase III su 95.6 0.029 6.3E-07 56.0 6.7 19 71-89 42-60 (484)
246 PRK12377 putative replication 95.6 0.042 9.1E-07 50.3 7.3 46 69-119 101-146 (248)
247 cd01122 GP4d_helicase GP4d_hel 95.6 0.069 1.5E-06 50.1 9.0 56 63-122 24-79 (271)
248 COG1474 CDC6 Cdc6-related prot 95.6 0.058 1.2E-06 52.5 8.6 45 51-96 21-68 (366)
249 PRK06645 DNA polymerase III su 95.5 0.033 7.2E-07 56.5 6.9 21 70-90 44-64 (507)
250 PRK00149 dnaA chromosomal repl 95.5 0.084 1.8E-06 53.5 9.9 48 70-120 149-196 (450)
251 TIGR02881 spore_V_K stage V sp 95.5 0.038 8.3E-07 51.4 6.8 20 69-88 42-61 (261)
252 PRK10917 ATP-dependent DNA hel 95.5 0.072 1.6E-06 56.9 9.6 80 331-410 309-390 (681)
253 PRK14712 conjugal transfer nic 95.5 0.068 1.5E-06 61.0 9.7 65 50-117 835-900 (1623)
254 PRK08084 DNA replication initi 95.5 0.092 2E-06 48.0 9.1 20 69-88 45-64 (235)
255 PRK05642 DNA replication initi 95.5 0.088 1.9E-06 48.0 8.9 36 70-109 46-81 (234)
256 PRK14087 dnaA chromosomal repl 95.4 0.14 3E-06 51.6 10.9 49 70-121 142-190 (450)
257 PRK13709 conjugal transfer nic 95.4 0.12 2.6E-06 59.9 11.3 65 50-117 967-1032(1747)
258 PTZ00112 origin recognition co 95.4 0.15 3.2E-06 54.3 10.9 44 51-95 759-806 (1164)
259 PRK13894 conjugal transfer ATP 95.3 0.047 1E-06 52.0 6.9 66 41-113 125-190 (319)
260 KOG0701 dsRNA-specific nucleas 95.3 0.011 2.3E-07 66.5 2.7 96 333-430 293-399 (1606)
261 PRK08727 hypothetical protein; 95.3 0.08 1.7E-06 48.3 8.0 35 70-108 42-76 (233)
262 PF01695 IstB_IS21: IstB-like 95.3 0.046 1E-06 47.4 6.1 46 67-117 45-90 (178)
263 COG3973 Superfamily I DNA and 95.2 0.1 2.2E-06 52.5 8.8 86 36-126 191-285 (747)
264 TIGR00362 DnaA chromosomal rep 95.2 0.12 2.5E-06 51.7 9.5 38 70-109 137-174 (405)
265 PRK07003 DNA polymerase III su 95.2 0.18 3.9E-06 53.0 10.8 18 71-88 40-57 (830)
266 PRK14086 dnaA chromosomal repl 95.1 0.19 4E-06 51.9 10.8 48 70-120 315-362 (617)
267 PRK09183 transposase/IS protei 95.1 0.38 8.2E-06 44.6 12.1 45 68-117 101-145 (259)
268 PRK14873 primosome assembly pr 95.1 0.16 3.4E-06 53.6 10.6 95 316-412 170-266 (665)
269 PRK05703 flhF flagellar biosyn 95.1 0.079 1.7E-06 52.8 8.0 25 69-93 221-245 (424)
270 COG1110 Reverse gyrase [DNA re 95.1 0.074 1.6E-06 56.7 7.9 73 323-396 116-192 (1187)
271 CHL00181 cbbX CbbX; Provisiona 95.1 0.11 2.5E-06 48.8 8.6 22 69-90 59-80 (287)
272 TIGR00595 priA primosomal prot 95.1 0.12 2.5E-06 53.0 9.3 92 317-411 8-101 (505)
273 PRK00411 cdc6 cell division co 95.1 0.07 1.5E-06 53.1 7.7 26 69-95 55-80 (394)
274 PRK14964 DNA polymerase III su 95.1 0.11 2.3E-06 52.5 8.8 22 69-90 35-56 (491)
275 PRK11823 DNA repair protein Ra 95.0 0.13 2.7E-06 51.8 9.1 61 59-124 69-130 (446)
276 PF05127 Helicase_RecD: Helica 95.0 0.0095 2.1E-07 51.0 1.0 53 73-128 1-53 (177)
277 PRK08116 hypothetical protein; 95.0 0.22 4.7E-06 46.4 10.0 44 70-118 115-158 (268)
278 PRK13833 conjugal transfer pro 94.9 0.085 1.8E-06 50.2 7.2 64 43-113 123-186 (323)
279 PRK05580 primosome assembly pr 94.9 0.15 3.2E-06 54.4 9.8 92 317-411 173-266 (679)
280 PF05621 TniB: Bacterial TniB 94.9 0.11 2.5E-06 48.2 7.8 16 70-85 62-77 (302)
281 PLN03025 replication factor C 94.9 0.15 3.2E-06 49.1 9.0 19 70-88 35-53 (319)
282 PRK07993 DNA polymerase III su 94.9 0.22 4.8E-06 47.9 10.1 39 50-88 2-43 (334)
283 TIGR03420 DnaA_homol_Hda DnaA 94.9 0.17 3.6E-06 46.0 9.0 21 68-88 37-57 (226)
284 KOG0991 Replication factor C, 94.9 0.1 2.2E-06 46.0 6.9 20 70-89 49-68 (333)
285 PRK14088 dnaA chromosomal repl 94.8 0.21 4.6E-06 50.2 10.2 38 70-109 131-168 (440)
286 PF05496 RuvB_N: Holliday junc 94.8 0.078 1.7E-06 47.0 6.2 19 70-88 51-69 (233)
287 TIGR02688 conserved hypothetic 94.8 0.1 2.2E-06 50.9 7.6 52 36-88 173-228 (449)
288 PF13177 DNA_pol3_delta2: DNA 94.8 0.15 3.2E-06 43.5 7.9 22 70-91 20-41 (162)
289 PF06733 DEAD_2: DEAD_2; Inte 94.8 0.016 3.5E-07 50.2 1.9 45 166-210 113-158 (174)
290 PRK14960 DNA polymerase III su 94.8 0.07 1.5E-06 55.2 6.7 20 70-89 38-57 (702)
291 COG0466 Lon ATP-dependent Lon 94.8 0.13 2.7E-06 53.1 8.3 57 175-235 398-455 (782)
292 TIGR00643 recG ATP-dependent D 94.7 0.14 3.1E-06 54.1 9.1 80 331-410 283-364 (630)
293 PRK08903 DnaA regulatory inact 94.7 0.34 7.3E-06 44.0 10.4 20 68-87 41-60 (227)
294 PHA02533 17 large terminase pr 94.7 0.12 2.7E-06 52.9 8.2 71 50-126 59-129 (534)
295 PRK11331 5-methylcytosine-spec 94.7 0.1 2.2E-06 51.6 7.2 27 61-87 186-212 (459)
296 TIGR02782 TrbB_P P-type conjug 94.6 0.13 2.9E-06 48.6 7.7 66 41-113 109-174 (299)
297 PRK07994 DNA polymerase III su 94.6 0.081 1.8E-06 55.2 6.7 18 72-89 41-58 (647)
298 PRK14958 DNA polymerase III su 94.6 0.16 3.5E-06 51.9 8.7 19 70-88 39-57 (509)
299 PRK14962 DNA polymerase III su 94.4 0.25 5.4E-06 50.0 9.6 20 70-89 37-56 (472)
300 PRK08939 primosomal protein Dn 94.4 0.16 3.4E-06 48.3 7.7 25 68-92 155-179 (306)
301 TIGR02928 orc1/cdc6 family rep 94.4 0.11 2.5E-06 51.0 7.1 26 69-95 40-65 (365)
302 PRK12727 flagellar biosynthesi 94.4 0.43 9.4E-06 48.3 10.9 26 67-92 348-373 (559)
303 PRK14961 DNA polymerase III su 94.3 0.037 8.1E-07 54.2 3.5 18 71-88 40-57 (363)
304 cd01121 Sms Sms (bacterial rad 94.3 0.2 4.2E-06 49.0 8.3 61 59-124 71-132 (372)
305 PRK06871 DNA polymerase III su 94.2 0.26 5.6E-06 47.1 8.7 39 51-89 3-44 (325)
306 PRK09376 rho transcription ter 94.2 0.19 4.2E-06 48.6 7.8 65 27-96 131-195 (416)
307 PRK13342 recombination factor 94.2 0.28 6.1E-06 49.0 9.4 19 70-88 37-55 (413)
308 PHA02544 44 clamp loader, smal 94.2 0.36 7.9E-06 46.4 9.9 27 197-223 100-126 (316)
309 PRK12422 chromosomal replicati 94.2 0.23 5E-06 49.9 8.7 43 70-117 142-184 (445)
310 PRK09111 DNA polymerase III su 94.1 0.098 2.1E-06 54.4 6.2 22 70-91 47-68 (598)
311 TIGR02760 TraI_TIGR conjugativ 94.1 0.17 3.7E-06 60.1 8.7 63 50-117 1019-1084(1960)
312 PRK10867 signal recognition pa 94.1 0.64 1.4E-05 46.3 11.5 59 71-135 102-162 (433)
313 TIGR01425 SRP54_euk signal rec 94.1 0.66 1.4E-05 46.0 11.4 62 71-139 102-165 (429)
314 PF06745 KaiC: KaiC; InterPro 94.1 0.099 2.1E-06 47.5 5.5 54 66-124 16-70 (226)
315 TIGR00767 rho transcription te 94.0 0.15 3.2E-06 49.6 6.7 29 66-95 165-193 (415)
316 COG0593 DnaA ATPase involved i 94.0 0.3 6.5E-06 47.8 8.8 40 69-110 113-152 (408)
317 PRK12323 DNA polymerase III su 93.9 0.27 5.8E-06 51.0 8.6 21 70-90 39-59 (700)
318 TIGR02012 tigrfam_recA protein 93.9 0.19 4E-06 47.8 7.1 54 58-115 42-97 (321)
319 PRK06835 DNA replication prote 93.9 0.16 3.4E-06 48.7 6.7 45 69-118 183-227 (329)
320 PRK14957 DNA polymerase III su 93.9 0.15 3.3E-06 52.2 6.9 20 71-90 40-59 (546)
321 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.12 2.6E-06 47.3 5.7 62 59-125 10-72 (237)
322 cd00983 recA RecA is a bacter 93.9 0.15 3.2E-06 48.6 6.3 54 58-115 42-97 (325)
323 TIGR00580 mfd transcription-re 93.8 0.34 7.3E-06 53.2 9.7 80 331-410 499-580 (926)
324 PRK09354 recA recombinase A; P 93.7 0.25 5.5E-06 47.4 7.7 53 59-115 48-102 (349)
325 PRK14949 DNA polymerase III su 93.7 0.19 4.2E-06 53.8 7.4 17 72-88 41-57 (944)
326 KOG2028 ATPase related to the 93.7 0.21 4.6E-06 47.1 6.8 50 70-123 163-212 (554)
327 PRK08699 DNA polymerase III su 93.7 0.91 2E-05 43.6 11.4 40 51-90 2-42 (325)
328 PRK08691 DNA polymerase III su 93.7 0.14 3.1E-06 53.4 6.3 20 70-89 39-58 (709)
329 TIGR00959 ffh signal recogniti 93.6 0.75 1.6E-05 45.8 11.0 60 71-136 101-162 (428)
330 PRK07940 DNA polymerase III su 93.6 0.44 9.4E-06 47.0 9.3 21 69-89 36-56 (394)
331 COG4962 CpaF Flp pilus assembl 93.6 0.12 2.7E-06 48.6 5.2 61 47-115 154-214 (355)
332 PRK11889 flhF flagellar biosyn 93.6 0.35 7.6E-06 47.0 8.3 58 70-135 242-302 (436)
333 COG1200 RecG RecG-like helicas 93.6 0.4 8.7E-06 49.4 9.1 90 322-411 300-392 (677)
334 COG4626 Phage terminase-like p 93.5 0.98 2.1E-05 45.5 11.5 79 49-127 60-144 (546)
335 COG1219 ClpX ATP-dependent pro 93.5 0.058 1.2E-06 49.9 2.8 20 68-87 96-115 (408)
336 PRK14963 DNA polymerase III su 93.5 0.4 8.6E-06 49.0 9.1 18 71-88 38-55 (504)
337 PRK12726 flagellar biosynthesi 93.4 0.42 9.1E-06 46.3 8.5 26 68-93 205-230 (407)
338 COG1198 PriA Primosomal protei 93.4 0.33 7.1E-06 51.3 8.5 94 314-410 225-320 (730)
339 cd01394 radB RadB. The archaea 93.4 0.52 1.1E-05 42.5 8.9 47 58-108 7-54 (218)
340 TIGR01547 phage_term_2 phage t 93.3 0.24 5.2E-06 49.3 7.3 59 71-130 3-62 (396)
341 PRK14951 DNA polymerase III su 93.3 0.22 4.9E-06 51.8 7.0 19 71-89 40-58 (618)
342 PRK06964 DNA polymerase III su 93.3 0.76 1.7E-05 44.3 10.2 40 51-90 2-42 (342)
343 PRK14959 DNA polymerase III su 93.2 0.18 3.8E-06 52.3 6.1 21 70-90 39-59 (624)
344 COG2255 RuvB Holliday junction 93.2 0.31 6.7E-06 44.6 6.8 19 70-88 53-71 (332)
345 PRK14952 DNA polymerase III su 93.2 0.21 4.7E-06 51.7 6.7 19 72-90 38-56 (584)
346 PF05876 Terminase_GpA: Phage 93.1 0.13 2.8E-06 53.3 5.0 73 49-126 15-88 (557)
347 PRK07764 DNA polymerase III su 93.1 0.47 1E-05 51.4 9.3 22 70-91 38-59 (824)
348 PRK14955 DNA polymerase III su 93.1 0.45 9.7E-06 47.3 8.7 20 70-89 39-58 (397)
349 COG2804 PulE Type II secretory 93.1 0.14 3.1E-06 50.8 5.0 44 51-97 242-285 (500)
350 PRK10689 transcription-repair 93.1 0.47 1E-05 53.5 9.6 79 331-409 648-728 (1147)
351 PRK13341 recombination factor 93.1 0.59 1.3E-05 49.9 10.0 19 70-88 53-71 (725)
352 PRK00080 ruvB Holliday junctio 93.1 0.44 9.5E-06 46.1 8.4 19 69-87 51-69 (328)
353 cd01130 VirB11-like_ATPase Typ 93.0 0.26 5.6E-06 43.2 6.2 39 43-86 4-42 (186)
354 PHA03368 DNA packaging termina 93.0 0.66 1.4E-05 48.0 9.6 56 69-126 254-309 (738)
355 PRK05563 DNA polymerase III su 93.0 0.13 2.9E-06 53.2 4.9 21 69-89 38-58 (559)
356 PRK14723 flhF flagellar biosyn 93.0 0.51 1.1E-05 50.1 9.1 63 69-135 185-248 (767)
357 KOG0738 AAA+-type ATPase [Post 93.0 0.84 1.8E-05 43.7 9.5 17 70-86 246-262 (491)
358 PRK14965 DNA polymerase III su 93.0 0.41 9E-06 49.9 8.5 19 70-88 39-57 (576)
359 PRK06995 flhF flagellar biosyn 92.8 0.69 1.5E-05 46.6 9.5 63 69-135 256-319 (484)
360 cd01128 rho_factor Transcripti 92.8 0.29 6.2E-06 44.9 6.3 20 66-85 13-32 (249)
361 PRK14950 DNA polymerase III su 92.8 0.21 4.5E-06 52.3 6.0 20 70-89 39-58 (585)
362 PRK04195 replication factor C 92.8 0.48 1E-05 48.5 8.5 19 69-87 39-57 (482)
363 PRK00771 signal recognition pa 92.6 0.62 1.3E-05 46.5 8.8 57 70-133 96-154 (437)
364 COG2805 PilT Tfp pilus assembl 92.6 0.14 3.1E-06 47.1 3.9 27 71-98 127-153 (353)
365 TIGR00064 ftsY signal recognit 92.6 1.1 2.3E-05 42.0 9.8 35 70-108 73-107 (272)
366 cd03115 SRP The signal recogni 92.4 1.7 3.7E-05 37.4 10.4 20 72-91 3-22 (173)
367 TIGR02640 gas_vesic_GvpN gas v 92.4 0.11 2.4E-06 48.3 3.1 37 52-88 4-40 (262)
368 KOG1513 Nuclear helicase MOP-3 92.3 0.15 3.2E-06 52.8 4.0 64 376-439 848-920 (1300)
369 TIGR00635 ruvB Holliday juncti 92.3 0.79 1.7E-05 43.7 9.0 18 70-87 31-48 (305)
370 TIGR00678 holB DNA polymerase 92.3 1.8 3.8E-05 37.9 10.5 20 69-88 14-33 (188)
371 cd01126 TraG_VirD4 The TraG/Tr 92.3 0.12 2.6E-06 51.3 3.3 48 71-124 1-48 (384)
372 PRK05896 DNA polymerase III su 92.2 0.29 6.2E-06 50.5 6.0 20 70-89 39-58 (605)
373 PRK14954 DNA polymerase III su 92.2 0.52 1.1E-05 49.3 8.0 20 70-89 39-58 (620)
374 PRK06090 DNA polymerase III su 92.2 0.4 8.8E-06 45.6 6.6 39 50-88 3-44 (319)
375 PRK14969 DNA polymerase III su 92.1 0.7 1.5E-05 47.6 8.8 20 70-89 39-58 (527)
376 PRK12608 transcription termina 91.9 0.6 1.3E-05 45.1 7.4 42 53-96 118-159 (380)
377 PRK14721 flhF flagellar biosyn 91.8 0.71 1.5E-05 45.7 8.0 67 68-137 190-256 (420)
378 PRK13851 type IV secretion sys 91.7 0.21 4.5E-06 48.2 4.2 42 68-114 161-202 (344)
379 PRK13897 type IV secretion sys 91.6 0.23 4.9E-06 51.7 4.6 49 70-124 159-207 (606)
380 PF06309 Torsin: Torsin; Inte 91.6 1.6 3.4E-05 35.0 8.2 55 69-124 51-112 (127)
381 TIGR03878 thermo_KaiC_2 KaiC d 91.5 0.41 8.8E-06 44.4 5.8 40 65-108 32-71 (259)
382 TIGR02784 addA_alphas double-s 91.5 0.54 1.2E-05 53.7 7.8 115 69-189 10-124 (1141)
383 PF02534 T4SS-DNA_transf: Type 91.5 0.22 4.8E-06 50.8 4.4 49 70-124 45-93 (469)
384 PRK09112 DNA polymerase III su 91.5 0.5 1.1E-05 45.9 6.5 40 55-95 28-70 (351)
385 PF12846 AAA_10: AAA-like doma 91.4 0.32 7E-06 46.2 5.3 42 70-115 2-43 (304)
386 PRK04328 hypothetical protein; 91.4 0.41 8.8E-06 44.2 5.7 62 59-125 12-74 (249)
387 KOG0331 ATP-dependent RNA heli 91.4 1.3 2.7E-05 44.8 9.2 75 100-203 340-415 (519)
388 PRK14948 DNA polymerase III su 91.4 0.54 1.2E-05 49.3 7.1 21 69-89 38-58 (620)
389 COG1197 Mfd Transcription-repa 91.4 0.96 2.1E-05 49.7 9.0 85 99-209 801-885 (1139)
390 PRK00440 rfc replication facto 91.3 0.89 1.9E-05 43.7 8.2 18 70-87 39-56 (319)
391 cd00984 DnaB_C DnaB helicase C 91.3 0.39 8.4E-06 44.1 5.4 45 61-108 5-49 (242)
392 PF03796 DnaB_C: DnaB-like hel 91.3 0.97 2.1E-05 42.0 8.1 48 59-109 9-56 (259)
393 PRK13900 type IV secretion sys 91.2 0.2 4.3E-06 48.2 3.5 41 68-113 159-199 (332)
394 PRK06647 DNA polymerase III su 91.2 0.35 7.6E-06 50.1 5.4 19 70-88 39-57 (563)
395 PF10593 Z1: Z1 domain; Inter 91.1 0.91 2E-05 41.3 7.5 88 360-453 111-204 (239)
396 PRK07471 DNA polymerase III su 91.1 1.3 2.9E-05 43.2 9.1 37 54-90 23-62 (365)
397 PRK10416 signal recognition pa 91.1 4.4 9.5E-05 38.8 12.4 36 69-108 114-149 (318)
398 COG0513 SrmB Superfamily II DN 91.0 0.85 1.8E-05 47.0 8.1 71 335-409 102-180 (513)
399 PRK14970 DNA polymerase III su 91.0 1 2.3E-05 44.3 8.4 18 70-87 40-57 (367)
400 COG0470 HolB ATPase involved i 90.9 1.2 2.6E-05 42.9 8.6 23 69-91 23-46 (325)
401 TIGR03881 KaiC_arch_4 KaiC dom 90.9 0.67 1.5E-05 42.1 6.5 61 59-124 9-70 (229)
402 TIGR02397 dnaX_nterm DNA polym 90.8 0.91 2E-05 44.4 7.8 19 69-87 36-54 (355)
403 TIGR03880 KaiC_arch_3 KaiC dom 90.7 0.75 1.6E-05 41.6 6.6 54 66-124 13-66 (224)
404 cd01129 PulE-GspE PulE/GspE Th 90.7 0.57 1.2E-05 43.5 5.9 48 42-95 58-105 (264)
405 PF02456 Adeno_IVa2: Adenoviru 90.7 0.48 1E-05 43.9 5.1 38 72-114 90-130 (369)
406 COG0210 UvrD Superfamily I DNA 90.7 0.64 1.4E-05 49.8 7.1 71 50-126 2-72 (655)
407 PRK14701 reverse gyrase; Provi 90.7 0.97 2.1E-05 52.7 8.8 64 331-394 121-187 (1638)
408 PHA02244 ATPase-like protein 90.7 0.22 4.8E-06 47.9 3.2 22 66-87 116-137 (383)
409 COG0467 RAD55 RecA-superfamily 90.6 0.56 1.2E-05 43.6 5.8 56 66-126 20-75 (260)
410 CHL00095 clpC Clp protease ATP 90.6 0.35 7.5E-06 53.0 5.0 38 51-88 510-558 (821)
411 PRK08451 DNA polymerase III su 90.5 1.6 3.5E-05 44.7 9.3 19 70-88 37-55 (535)
412 PHA00350 putative assembly pro 90.4 0.54 1.2E-05 46.0 5.6 25 72-96 4-29 (399)
413 TIGR02639 ClpA ATP-dependent C 90.3 1.9 4.1E-05 46.7 10.3 39 50-88 182-222 (731)
414 PRK08533 flagellar accessory p 90.3 0.66 1.4E-05 42.1 5.9 53 67-124 22-74 (230)
415 cd00544 CobU Adenosylcobinamid 90.3 2.2 4.8E-05 36.6 8.7 45 72-123 2-46 (169)
416 COG1074 RecB ATP-dependent exo 90.2 0.58 1.3E-05 53.1 6.5 58 68-125 15-73 (1139)
417 KOG2004 Mitochondrial ATP-depe 90.2 0.53 1.2E-05 48.7 5.5 52 174-229 485-537 (906)
418 TIGR03819 heli_sec_ATPase heli 90.0 0.84 1.8E-05 44.1 6.6 64 40-113 154-217 (340)
419 PRK13850 type IV secretion sys 89.9 0.42 9.1E-06 50.4 4.8 50 69-124 139-188 (670)
420 PRK07399 DNA polymerase III su 89.8 2 4.3E-05 41.1 8.9 20 69-88 26-45 (314)
421 COG1702 PhoH Phosphate starvat 89.8 0.67 1.5E-05 43.7 5.5 55 49-109 127-181 (348)
422 PF01637 Arch_ATPase: Archaeal 89.6 2.1 4.6E-05 38.6 8.9 17 69-85 20-36 (234)
423 TIGR00763 lon ATP-dependent pr 89.6 1.5 3.3E-05 47.7 8.9 20 68-87 346-365 (775)
424 PF01443 Viral_helicase1: Vira 89.6 0.2 4.3E-06 45.7 1.9 14 72-85 1-14 (234)
425 COG0552 FtsY Signal recognitio 89.6 2.6 5.5E-05 39.9 9.0 56 72-134 142-199 (340)
426 KOG0344 ATP-dependent RNA heli 89.5 2.4 5.3E-05 42.7 9.3 105 75-208 363-467 (593)
427 PRK12724 flagellar biosynthesi 89.4 1.5 3.2E-05 43.3 7.7 57 70-132 224-282 (432)
428 PRK14971 DNA polymerase III su 89.3 2 4.3E-05 45.2 9.2 19 70-88 40-58 (614)
429 PF01580 FtsK_SpoIIIE: FtsK/Sp 89.3 0.6 1.3E-05 41.6 4.8 42 69-110 38-79 (205)
430 PRK07133 DNA polymerase III su 89.3 1.2 2.5E-05 47.3 7.4 20 70-89 41-60 (725)
431 PRK10436 hypothetical protein; 89.2 0.68 1.5E-05 46.6 5.5 48 42-95 196-243 (462)
432 PRK06305 DNA polymerase III su 89.1 0.86 1.9E-05 46.0 6.1 20 70-89 40-59 (451)
433 PF03237 Terminase_6: Terminas 89.1 1.6 3.4E-05 42.9 8.1 42 73-116 1-42 (384)
434 TIGR02533 type_II_gspE general 89.0 0.95 2.1E-05 46.1 6.4 48 42-95 220-267 (486)
435 KOG2228 Origin recognition com 88.9 3.7 8E-05 38.8 9.4 29 199-227 139-167 (408)
436 KOG1807 Helicases [Replication 88.9 1.6 3.5E-05 45.5 7.7 71 49-123 377-449 (1025)
437 PRK06731 flhF flagellar biosyn 88.8 4.7 0.0001 37.5 10.3 22 70-91 76-97 (270)
438 PF01935 DUF87: Domain of unkn 88.8 0.71 1.5E-05 42.0 4.9 42 69-113 23-64 (229)
439 TIGR03743 SXT_TraD conjugative 88.8 0.98 2.1E-05 47.6 6.5 55 68-126 175-231 (634)
440 PF00437 T2SE: Type II/IV secr 88.7 0.3 6.6E-06 45.7 2.5 42 68-113 126-167 (270)
441 PRK11034 clpA ATP-dependent Cl 88.7 2.7 5.8E-05 45.3 9.7 21 68-88 206-226 (758)
442 PRK04537 ATP-dependent RNA hel 88.7 3.3 7.1E-05 43.4 10.3 77 101-206 257-334 (572)
443 PF13481 AAA_25: AAA domain; P 88.6 1.1 2.4E-05 39.4 5.9 63 62-125 24-93 (193)
444 PRK14953 DNA polymerase III su 88.6 0.92 2E-05 46.2 6.0 19 71-89 40-58 (486)
445 TIGR01054 rgy reverse gyrase. 88.5 1.6 3.4E-05 49.6 8.2 63 332-394 121-187 (1171)
446 PRK05800 cobU adenosylcobinami 88.5 8.9 0.00019 32.9 11.2 45 71-122 3-47 (170)
447 TIGR02524 dot_icm_DotB Dot/Icm 88.4 0.69 1.5E-05 45.0 4.8 28 68-96 133-160 (358)
448 PF01078 Mg_chelatase: Magnesi 88.4 0.23 5E-06 43.6 1.3 20 67-86 20-39 (206)
449 TIGR00416 sms DNA repair prote 88.4 1.6 3.4E-05 44.1 7.5 61 59-124 83-144 (454)
450 PRK06067 flagellar accessory p 88.3 1.5 3.4E-05 39.9 6.9 61 59-124 14-75 (234)
451 cd01131 PilT Pilus retraction 88.2 0.73 1.6E-05 40.8 4.5 35 72-109 4-38 (198)
452 PRK13531 regulatory ATPase Rav 88.1 0.59 1.3E-05 46.8 4.1 37 51-87 21-57 (498)
453 TIGR02655 circ_KaiC circadian 88.1 1.2 2.6E-05 45.5 6.5 63 59-125 10-73 (484)
454 COG0630 VirB11 Type IV secreto 88.0 0.94 2E-05 43.2 5.3 56 50-113 127-182 (312)
455 PRK04841 transcriptional regul 87.9 3.3 7.2E-05 46.3 10.5 29 198-226 122-150 (903)
456 KOG0733 Nuclear AAA ATPase (VC 87.8 4.3 9.4E-05 41.5 9.8 18 69-86 545-562 (802)
457 PHA03372 DNA packaging termina 87.7 4.4 9.5E-05 41.6 9.8 53 69-123 202-254 (668)
458 TIGR00631 uvrb excinuclease AB 87.7 2.5 5.4E-05 44.8 8.7 89 92-209 433-522 (655)
459 KOG0745 Putative ATP-dependent 87.7 0.43 9.4E-06 46.2 2.7 20 68-87 225-244 (564)
460 PRK06904 replicative DNA helic 87.6 3.5 7.6E-05 41.9 9.4 61 58-122 210-270 (472)
461 PF13191 AAA_16: AAA ATPase do 87.6 1.5 3.2E-05 38.1 6.1 29 68-97 23-51 (185)
462 PRK08506 replicative DNA helic 87.5 3.4 7.5E-05 42.0 9.4 59 58-121 181-239 (472)
463 cd00268 DEADc DEAD-box helicas 87.5 4.4 9.6E-05 35.8 9.2 77 331-411 68-151 (203)
464 KOG0744 AAA+-type ATPase [Post 87.4 2.6 5.6E-05 39.5 7.4 69 69-138 177-258 (423)
465 PRK08058 DNA polymerase III su 87.4 2.2 4.9E-05 41.1 7.6 19 70-88 29-47 (329)
466 TIGR03346 chaperone_ClpB ATP-d 87.4 3.6 7.8E-05 45.4 10.1 38 51-88 174-213 (852)
467 PRK13822 conjugal transfer cou 87.4 0.76 1.6E-05 48.4 4.6 50 69-124 224-273 (641)
468 CHL00095 clpC Clp protease ATP 87.3 3.8 8.2E-05 45.0 10.1 24 68-91 199-222 (821)
469 COG1674 FtsK DNA segregation A 87.3 4 8.7E-05 45.0 10.3 40 68-107 529-568 (858)
470 TIGR02880 cbbX_cfxQ probable R 87.1 1.1 2.4E-05 42.2 5.2 20 69-88 58-77 (284)
471 TIGR03754 conj_TOL_TraD conjug 87.1 1.7 3.6E-05 45.4 6.8 54 69-126 180-235 (643)
472 TIGR02538 type_IV_pilB type IV 87.0 0.73 1.6E-05 48.0 4.3 48 42-95 294-341 (564)
473 cd01127 TrwB Bacterial conjuga 86.8 0.82 1.8E-05 45.6 4.4 45 68-116 41-85 (410)
474 KOG0739 AAA+-type ATPase [Post 86.7 2.3 4.9E-05 39.4 6.5 46 70-123 167-212 (439)
475 TIGR02237 recomb_radB DNA repa 86.6 1.1 2.3E-05 40.1 4.7 40 67-110 10-49 (209)
476 TIGR02655 circ_KaiC circadian 86.6 1.2 2.7E-05 45.5 5.6 64 57-125 250-314 (484)
477 TIGR02788 VirB11 P-type DNA tr 86.5 0.77 1.7E-05 43.8 3.9 19 67-85 142-160 (308)
478 KOG0333 U5 snRNP-like RNA heli 86.5 4.4 9.5E-05 40.5 8.8 73 101-202 517-590 (673)
479 PRK13876 conjugal transfer cou 86.4 0.66 1.4E-05 48.9 3.6 50 69-124 144-193 (663)
480 PRK09361 radB DNA repair and r 86.4 1.6 3.6E-05 39.4 5.8 47 59-109 12-59 (225)
481 PF13555 AAA_29: P-loop contai 86.2 0.67 1.5E-05 31.9 2.4 17 69-85 23-39 (62)
482 PF08423 Rad51: Rad51; InterP 86.2 1.9 4E-05 39.9 6.1 52 58-109 26-80 (256)
483 PTZ00110 helicase; Provisional 86.0 4.4 9.5E-05 42.2 9.4 76 100-204 376-452 (545)
484 KOG1806 DEAD box containing he 85.9 1.1 2.4E-05 48.1 4.8 73 46-124 734-806 (1320)
485 TIGR01420 pilT_fam pilus retra 85.9 1.2 2.6E-05 43.3 4.9 43 68-113 121-163 (343)
486 cd00079 HELICc Helicase superf 85.9 13 0.00029 29.6 10.6 79 100-207 27-106 (131)
487 TIGR02767 TraG-Ti Ti-type conj 85.6 1.1 2.5E-05 46.8 4.8 50 69-124 211-260 (623)
488 PF12775 AAA_7: P-loop contain 85.5 1 2.2E-05 42.1 4.0 18 68-85 32-49 (272)
489 KOG0298 DEAD box-containing he 85.5 1.6 3.4E-05 48.2 5.8 96 331-433 1220-1315(1394)
490 PF04665 Pox_A32: Poxvirus A32 85.5 1.1 2.5E-05 40.5 4.2 36 70-109 14-49 (241)
491 PRK09519 recA DNA recombinatio 85.4 3.3 7.1E-05 44.4 8.0 53 58-114 47-101 (790)
492 PRK11192 ATP-dependent RNA hel 85.3 5.4 0.00012 40.2 9.5 75 101-203 245-319 (434)
493 KOG2170 ATPase of the AAA+ sup 85.3 2.4 5.2E-05 39.3 6.0 30 72-102 113-142 (344)
494 PRK11634 ATP-dependent RNA hel 85.0 3.3 7.2E-05 43.8 8.0 74 332-409 74-155 (629)
495 KOG0058 Peptide exporter, ABC 84.9 0.64 1.4E-05 48.2 2.5 143 67-225 492-650 (716)
496 PRK13880 conjugal transfer cou 84.8 0.67 1.5E-05 48.9 2.7 47 69-121 175-221 (636)
497 PF13479 AAA_24: AAA domain 84.7 2.3 5.1E-05 38.1 5.9 38 174-212 46-83 (213)
498 TIGR02525 plasmid_TraJ plasmid 84.7 1.4 3E-05 43.1 4.7 27 69-96 149-175 (372)
499 TIGR03345 VI_ClpV1 type VI sec 84.7 6.2 0.00013 43.4 10.1 38 51-88 188-227 (852)
500 KOG0732 AAA+-type ATPase conta 84.7 3.1 6.7E-05 45.6 7.5 57 25-87 260-317 (1080)
No 1
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-70 Score=492.03 Aligned_cols=380 Identities=35% Similarity=0.517 Sum_probs=338.6
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+++|++++++++.||..|+++|.++|+.+ +.|+|+|..|.||||||.+|++|+++.|...+ ..+.++|++|||+|
T Consensus 67 gv~~~L~~ac~~l~~~~PT~IQ~~aiP~~----L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-~~~~~lVLtPtREL 141 (476)
T KOG0330|consen 67 GVHPELLEACQELGWKKPTKIQSEAIPVA----LGGRDVIGLAETGSGKTGAFALPILQRLLQEP-KLFFALVLTPTREL 141 (476)
T ss_pred CcCHHHHHHHHHhCcCCCchhhhhhcchh----hCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-CCceEEEecCcHHH
Confidence 59999999999999999999999996655 56999999999999999999999999998864 45799999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
|.|+.+.+..+....|+++..++||.+...+...+. +.|+|+|+|||+|++++.+.+.+
T Consensus 142 A~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~---------------------kkPhilVaTPGrL~dhl~~Tkgf 200 (476)
T KOG0330|consen 142 AQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS---------------------KKPHILVATPGRLWDHLENTKGF 200 (476)
T ss_pred HHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh---------------------cCCCEEEeCcHHHHHHHHhccCc
Confidence 999999999999999999999999999877765543 56799999999999999988899
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
++..++++|+||||+++++.|.+.+.+|++.++.. .+.+++|
T Consensus 201 ~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ip~e--------------------------------------rqt~Lfs 242 (476)
T KOG0330|consen 201 SLEQLKFLVLDEADRLLDMDFEEELDYILKVIPRE--------------------------------------RQTFLFS 242 (476)
T ss_pred cHHHhHHHhhchHHhhhhhhhHHHHHHHHHhcCcc--------------------------------------ceEEEEE
Confidence 99999999999999999999999999999988733 2889999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHh
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (515)
||++.++.++....+.+|..+..... +..-..+.+++...+...|...|+.+++...+..+||||++...++.++-.|+
T Consensus 243 ATMt~kv~kL~rasl~~p~~v~~s~k-y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~ 321 (476)
T KOG0330|consen 243 ATMTKKVRKLQRASLDNPVKVAVSSK-YQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLR 321 (476)
T ss_pred eecchhhHHHHhhccCCCeEEeccch-hcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHH
Confidence 99999999999999999998877553 34455677888899999999999999999999999999999999999999999
Q ss_pred hcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCc
Q 010196 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (515)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (515)
..+ +....+||.|++..|...++.|++|..+||||||+++||+|+|.+++|||||+|.+..+|+||+||++|+|..|
T Consensus 322 ~lg---~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG 398 (476)
T KOG0330|consen 322 NLG---FQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSG 398 (476)
T ss_pred hcC---cceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCc
Confidence 877 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHH
Q 010196 434 RCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDK 482 (515)
Q Consensus 434 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (515)
.++.+++..|++.+.+|+..+.++. +...++....-.+.+...++.+.
T Consensus 399 ~~ItlVtqyDve~~qrIE~~~gkkl-~~~~~~~~~~~~l~erv~eA~~~ 446 (476)
T KOG0330|consen 399 KAITLVTQYDVELVQRIEHALGKKL-PEYKVDKNEVMSLNERVAEAQKE 446 (476)
T ss_pred ceEEEEehhhhHHHHHHHHHHhcCC-CccCcchHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776543 22334443333444444444433
No 2
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.7e-67 Score=488.32 Aligned_cols=399 Identities=33% Similarity=0.564 Sum_probs=350.4
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc--CcccEEE
Q 010196 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALV 106 (515)
Q Consensus 29 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~~li 106 (515)
|.++. |+..+++++..+||..|+|+|..+|+-. +.|+|++.+|.||||||.+|++|++++|.-.+. ...+|||
T Consensus 183 F~~mN-LSRPlLka~~~lGy~~PTpIQ~a~IPva----llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLV 257 (691)
T KOG0338|consen 183 FQSMN-LSRPLLKACSTLGYKKPTPIQVATIPVA----LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLV 257 (691)
T ss_pred HHhcc-cchHHHHHHHhcCCCCCCchhhhcccHH----hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEE
Confidence 44443 9999999999999999999999996644 459999999999999999999999999877543 4568999
Q ss_pred EcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHH
Q 010196 107 VLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (515)
Q Consensus 107 l~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 186 (515)
|||||+|+.|++...++++.++++.|+++.||-+...+.. .|+.+|||||+|||+|.++
T Consensus 258 L~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~---------------------~LRs~PDIVIATPGRlIDH 316 (691)
T KOG0338|consen 258 LVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEA---------------------VLRSRPDIVIATPGRLIDH 316 (691)
T ss_pred EeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHH---------------------HHhhCCCEEEecchhHHHH
Confidence 9999999999999999999999999999999999877754 4678899999999999999
Q ss_pred HhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCc
Q 010196 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (515)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
+.+..+|+++++.++|+||||+|++.+|.+.+..|+.+++...
T Consensus 317 lrNs~sf~ldsiEVLvlDEADRMLeegFademnEii~lcpk~R------------------------------------- 359 (691)
T KOG0338|consen 317 LRNSPSFNLDSIEVLVLDEADRMLEEGFADEMNEIIRLCPKNR------------------------------------- 359 (691)
T ss_pred hccCCCccccceeEEEechHHHHHHHHHHHHHHHHHHhccccc-------------------------------------
Confidence 9999999999999999999999999999999999999987443
Q ss_pred eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec--cCCCcHHHHHHHHHhcCCCeEEEEcCChhh
Q 010196 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC--ESKLKPLYLVALLQSLGEEKCIVFTSSVES 344 (515)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~ 344 (515)
|.++||||++..+..++...++.|+.+...+.....+...+.+.-+. ....+...+..++......++|||+.|++.
T Consensus 360 -QTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~ 438 (691)
T KOG0338|consen 360 -QTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQ 438 (691)
T ss_pred -cceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHH
Confidence 88999999999999999999999999988776544444333333222 245677888888888888999999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhh
Q 010196 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAG 424 (515)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~G 424 (515)
|+.+.-.|--+| ..+..+||.+++.+|.+.++.|+.++++||||||+++||+||++|.+||||+.|.+...|+||+|
T Consensus 439 AHRl~IllGLlg---l~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVG 515 (691)
T KOG0338|consen 439 AHRLRILLGLLG---LKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVG 515 (691)
T ss_pred HHHHHHHHHHhh---chhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhh
Confidence 999988886655 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCccEEEEeechhHHHHHHHHHHh--cCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhccc
Q 010196 425 RTARAGQLGRCFTLLHKDEVKRFKKLLQKA--DNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 494 (515)
Q Consensus 425 R~gR~g~~g~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (515)
|+.|+|+.|.+++|+.++|...++.+++.. .+.......+|+..++.++..++...+.+..++..+...+
T Consensus 516 RTARAGRaGrsVtlvgE~dRkllK~iik~~~~a~~klk~R~i~~~~Iek~~~~ieemE~~iq~vl~eE~~ek 587 (691)
T KOG0338|consen 516 RTARAGRAGRSVTLVGESDRKLLKEIIKSSTKAGSKLKNRNIPPEVIEKFRKKIEEMEDTIQAVLDEEREEK 587 (691)
T ss_pred hhhhcccCcceEEEeccccHHHHHHHHhhhhhcccchhhcCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998874 3334455788999999998888888877777776655433
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-66 Score=499.19 Aligned_cols=360 Identities=32% Similarity=0.504 Sum_probs=324.4
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc-----ccCccc
Q 010196 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLR 103 (515)
Q Consensus 29 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~ 103 (515)
|+.+ +++++....++..||+.|+|+|.++|+.+ +.|+|++..|.||||||++|++|++.++... ...+++
T Consensus 93 f~~~-~ls~~~~~~lk~~g~~~PtpIQaq~wp~~----l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~ 167 (519)
T KOG0331|consen 93 FQEL-GLSEELMKALKEQGFEKPTPIQAQGWPIA----LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPI 167 (519)
T ss_pred hhcc-cccHHHHHHHHhcCCCCCchhhhccccee----ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCe
Confidence 3444 49999999999999999999999997765 4599999999999999999999999999862 245789
Q ss_pred EEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH
Q 010196 104 ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL 183 (515)
Q Consensus 104 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l 183 (515)
+|||+||||||.|+.+.+.++...+.++..+++|+.+...+... +..+.+|+|+||++|
T Consensus 168 vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~---------------------l~~gvdiviaTPGRl 226 (519)
T KOG0331|consen 168 VLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRD---------------------LERGVDVVIATPGRL 226 (519)
T ss_pred EEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHH---------------------HhcCCcEEEeCChHH
Confidence 99999999999999999999999999999999999998888754 457789999999999
Q ss_pred HHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCC
Q 010196 184 MDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (515)
Q Consensus 184 ~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
.+++.. +.++++++.++|+||||+|++++|...++.|+..++.+.
T Consensus 227 ~d~le~-g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~---------------------------------- 271 (519)
T KOG0331|consen 227 IDLLEE-GSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPD---------------------------------- 271 (519)
T ss_pred HHHHHc-CCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCc----------------------------------
Confidence 999998 668899999999999999999999999999999875332
Q ss_pred CCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCc-cccCCcccceeEEeccCCCcHHHHHHHHHhc---CCCeEEEEc
Q 010196 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSL---GEEKCIVFT 339 (515)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~ 339 (515)
.|++++|||++..+..++..++.+|..+..... .......+.+....++...|...|..+|... .++|+||||
T Consensus 272 ---rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc 348 (519)
T KOG0331|consen 272 ---RQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFC 348 (519)
T ss_pred ---ccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEe
Confidence 278999999999999999999999999888755 5555667778878888888888888888765 467999999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhh
Q 010196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (515)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~ 419 (515)
+|++.|+++...|...+ +++..+||+.++.+|+.+|+.|++|+..||||||+++||+|+|+|++|||||+|.+.++|
T Consensus 349 ~tkr~~~~l~~~l~~~~---~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdY 425 (519)
T KOG0331|consen 349 ETKRTCDELARNLRRKG---WPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDY 425 (519)
T ss_pred cchhhHHHHHHHHHhcC---cceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHH
Confidence 99999999999998765 789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 420 IHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
+||+|||||+|+.|.+++|++..+......+.+.+.
T Consensus 426 VHRiGRTGRa~~~G~A~tfft~~~~~~a~~l~~~l~ 461 (519)
T KOG0331|consen 426 VHRIGRTGRAGKKGTAITFFTSDNAKLARELIKVLR 461 (519)
T ss_pred HhhcCccccCCCCceEEEEEeHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888777777654
No 4
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.3e-64 Score=468.36 Aligned_cols=463 Identities=43% Similarity=0.664 Sum_probs=382.7
Q ss_pred CCCCCccccCCCCCCCCCCC---------CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCC-----CCCCCEEEECCCC
Q 010196 14 WMRSPVDVSLFEDCPLDHLP---------CLDPRLKVALQNMGISSLFPVQVAVWQETIGPG-----LFERDLCINSPTG 79 (515)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~---------~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~-----~~~~~~ii~a~TG 79 (515)
|...|.-+..-+-..|+.+. .|...+..++.+++++...|+|..++++++..+ ..++|+++.||||
T Consensus 114 wva~p~t~~~nslq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTG 193 (620)
T KOG0350|consen 114 WVAIPETAQNNSLQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTG 193 (620)
T ss_pred cccCceecCCCceeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCC
Confidence 88888777754433333321 133445566889999999999999999886443 3479999999999
Q ss_pred chhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCccccccc
Q 010196 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (515)
Q Consensus 80 sGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (515)
||||++|.+|+++.+..++.+..+++|++||++|+.|+++.|..++...|+.|+.+.|..+..+...++...+.
T Consensus 194 SGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~------ 267 (620)
T KOG0350|consen 194 SGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPP------ 267 (620)
T ss_pred CCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCC------
Confidence 99999999999999999888889999999999999999999999999999999999999999888877754332
Q ss_pred CCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccC-----cccccC
Q 010196 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD-----NENRFS 234 (515)
Q Consensus 160 ~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~-----~~~~~~ 234 (515)
....||+|+|||+|++++.+.+.+.+.+++++||||||+|++..|++|+..++.++... ..+.+.
T Consensus 268 ----------~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~ 337 (620)
T KOG0350|consen 268 ----------ECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIR 337 (620)
T ss_pred ----------ccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhh
Confidence 12359999999999999998889999999999999999999999999999999887755 222222
Q ss_pred CccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeC---CccccCCcccceeE
Q 010196 235 DASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG---ETRYKLPERLESYK 311 (515)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 311 (515)
....+.+..+...... ....+++...+++|||++.+...+....+..|...... ..++.++..+.++.
T Consensus 338 ~~~~~~pt~~~e~~t~---------~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~ 408 (620)
T KOG0350|consen 338 QRQAPQPTVLSELLTK---------LGKLYPPLWKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRL 408 (620)
T ss_pred hcccCCchhhHHHHhh---------cCCcCchhHhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhce
Confidence 1111122222111111 13445777789999999999999999999999665554 46788899999999
Q ss_pred EeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHh-hcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEE
Q 010196 312 LICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN-HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (515)
Q Consensus 312 ~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~-~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv 390 (515)
+.++...+...++.++......++|+|+++...+.+++..|+ .++..+.++..++|.++.+.|.+.++.|..|++++||
T Consensus 409 vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLI 488 (620)
T KOG0350|consen 409 VVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLI 488 (620)
T ss_pred eecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEE
Confidence 999999999999999999999999999999999999999998 7777888899999999999999999999999999999
Q ss_pred ecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC-CCCCccCCChhhH
Q 010196 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLI 469 (515)
Q Consensus 391 ~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~ 469 (515)
|+|+++||+|+.+++.||+||+|.+..+|+||+||++|+|+.|.|+.+++..+...|.++++..+. ...++..++..-.
T Consensus 489 cSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F~klL~~~~~~d~~~i~~~e~~~~ 568 (620)
T KOG0350|consen 489 CSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLFSKLLKKTNLWDGVEIQPIEYIFI 568 (620)
T ss_pred ehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCCceEEEeeccccchHHHHHHHHhcccCCcceeecCchHH
Confidence 999999999999999999999999999999999999999999999999999999999999998765 3344444554444
Q ss_pred hhhHHHHHHHHHHHHHHHHHh-hcccccccccc
Q 010196 470 ESLRPVYKSALDKLKETVESE-AHRKHTIGFKL 501 (515)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 501 (515)
......|.++++.++..+.+. ..+++...|+.
T Consensus 569 ~~~~~~Yt~ALEsLk~e~~~s~~~~k~q~a~r~ 601 (620)
T KOG0350|consen 569 KDEDDRYTKALESLKAEVVNSAKPKKRQIAFRS 601 (620)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccchhhhHh
Confidence 445558999999999665544 44444455553
No 5
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.6e-63 Score=496.48 Aligned_cols=356 Identities=31% Similarity=0.534 Sum_probs=319.4
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc-ccCcccEEEEcccHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDL 113 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~~lil~Pt~~L 113 (515)
+++.+++++.++||..|+|+|.++++.++. |+|++++|+||||||++|++|+++.+... ......+||++|||+|
T Consensus 36 l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~----g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTREL 111 (513)
T COG0513 36 LSPELLQALKDLGFEEPTPIQLAAIPLILA----GRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTREL 111 (513)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHH
Confidence 999999999999999999999999888754 89999999999999999999999998742 1121129999999999
Q ss_pred HHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
|.|+++.+..+.... ++++..++|+.+...+... +..+++|+|+||+++++++.+. .
T Consensus 112 A~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~---------------------l~~~~~ivVaTPGRllD~i~~~-~ 169 (513)
T COG0513 112 AVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEA---------------------LKRGVDIVVATPGRLLDLIKRG-K 169 (513)
T ss_pred HHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHH---------------------HhcCCCEEEECccHHHHHHHcC-C
Confidence 999999999999988 7999999999998887643 3346899999999999999984 7
Q ss_pred CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
++++.+.++|+||||+|++++|.+.+..|+..++. ..|+++|
T Consensus 170 l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~--------------------------------------~~qtllf 211 (513)
T COG0513 170 LDLSGVETLVLDEADRMLDMGFIDDIEKILKALPP--------------------------------------DRQTLLF 211 (513)
T ss_pred cchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCc--------------------------------------ccEEEEE
Confidence 88999999999999999999999999999998764 2389999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCcc-ccCCcccceeEEeccCCC-cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHH
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETR-YKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (515)
|||++..+..+....+.+|..+...... ......+.++++.+.... |...|..++......++||||+++..++.++.
T Consensus 212 SAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~ 291 (513)
T COG0513 212 SATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAE 291 (513)
T ss_pred ecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHH
Confidence 9999998889999999999887776332 225567888888887765 99999999998888899999999999999999
Q ss_pred HHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCC
Q 010196 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (515)
Q Consensus 351 ~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (515)
.|...+ +.+..+||++++.+|.++++.|++|+.+||||||+++||||+|++++|||||+|.+++.|+||+||+||+|
T Consensus 292 ~l~~~g---~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG 368 (513)
T COG0513 292 SLRKRG---FKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG 368 (513)
T ss_pred HHHHCC---CeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC
Confidence 999877 89999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeech-hHHHHHHHHHHhcCC
Q 010196 431 QLGRCFTLLHKD-EVKRFKKLLQKADND 457 (515)
Q Consensus 431 ~~g~~~~~~~~~-d~~~~~~~~~~~~~~ 457 (515)
..|.+++|+.+. |...+..+.+.....
T Consensus 369 ~~G~ai~fv~~~~e~~~l~~ie~~~~~~ 396 (513)
T COG0513 369 RKGVAISFVTEEEEVKKLKRIEKRLERK 396 (513)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 999999999986 888888888775443
No 6
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-63 Score=455.31 Aligned_cols=357 Identities=33% Similarity=0.517 Sum_probs=316.0
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccC----cccEEEEcc
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR----CLRALVVLP 109 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~----~~~~lil~P 109 (515)
+|++++++++..+||..+||+|..+++.++ .++|+++.|+||||||++|++|+++.+.++... ...+||++|
T Consensus 12 ~L~~~l~~~l~~~GF~~mTpVQa~tIPlll----~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsP 87 (567)
T KOG0345|consen 12 PLSPWLLEALDESGFEKMTPVQAATIPLLL----KNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISP 87 (567)
T ss_pred CccHHHHHHHHhcCCcccCHHHHhhhHHHh----cCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecC
Confidence 488999999999999999999999977664 599999999999999999999999999554322 236899999
Q ss_pred cHHHHHHHHHHHHHhccc-cCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHh
Q 010196 110 TRDLALQVKDVFAAIAPA-VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (515)
Q Consensus 110 t~~L~~q~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 188 (515)
||+|+.|+.+.+..+..+ .++++.+++||.+..+....+ ..++++|+|||||+|.+.+.
T Consensus 88 TRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~f--------------------kee~~nIlVgTPGRL~di~~ 147 (567)
T KOG0345|consen 88 TRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTF--------------------KEEGPNILVGTPGRLLDILQ 147 (567)
T ss_pred cHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHH--------------------HHhCCcEEEeCchhHHHHHh
Confidence 999999999999998877 478999999999888776543 35788999999999999998
Q ss_pred cC-cCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCce
Q 010196 189 AT-RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (515)
Q Consensus 189 ~~-~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
+. ..+++..+.++|+||||++++++|...+..|+..++...
T Consensus 148 ~~~~~l~~rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQR-------------------------------------- 189 (567)
T KOG0345|consen 148 REAEKLSFRSLEILVLDEADRLLDMGFEASVNTILSFLPKQR-------------------------------------- 189 (567)
T ss_pred chhhhccccccceEEecchHhHhcccHHHHHHHHHHhccccc--------------------------------------
Confidence 73 335667999999999999999999999999999987432
Q ss_pred eeEEEEEEecCCchhhhhcccCCCeeEeeCCccc-cCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHH
Q 010196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY-KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (515)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (515)
++=+||||....+..+...++.+|+.+....... ..|..+..++..++...|...+++++......++|||++|+..++
T Consensus 190 RTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVe 269 (567)
T KOG0345|consen 190 RTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVE 269 (567)
T ss_pred ccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHH
Confidence 4568999999999999999999999988766542 357778899999999999999999999988999999999999999
Q ss_pred HHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhc
Q 010196 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (515)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (515)
+....+...- ....++.+||.|++..|..+++.|......+|+|||+++||+|+|++++||+||+|.+++.|+||+||+
T Consensus 270 Yf~~~~~~~l-~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRT 348 (567)
T KOG0345|consen 270 YFGKLFSRLL-KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRT 348 (567)
T ss_pred HHHHHHHHHh-CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchh
Confidence 9999998762 347899999999999999999999998889999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeechhHHHHHHHHHHh
Q 010196 427 ARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (515)
Q Consensus 427 gR~g~~g~~~~~~~~~d~~~~~~~~~~~ 454 (515)
+|.|+.|.+++|+.+.+ ..|..+++.-
T Consensus 349 aR~gr~G~Aivfl~p~E-~aYveFl~i~ 375 (567)
T KOG0345|consen 349 ARAGREGNAIVFLNPRE-EAYVEFLRIK 375 (567)
T ss_pred hhccCccceEEEecccH-HHHHHHHHhc
Confidence 99999999999999955 4555565553
No 7
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=7.3e-63 Score=457.07 Aligned_cols=351 Identities=32% Similarity=0.488 Sum_probs=315.3
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---cCcccEEEEcccH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt~ 111 (515)
|++..+++++++||.+++++|... ++.++.|+|+++.|.||||||++|++|+++.+...+ .++..++|++|||
T Consensus 89 LS~~t~kAi~~~GF~~MT~VQ~~t----i~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTR 164 (543)
T KOG0342|consen 89 LSPLTLKAIKEMGFETMTPVQQKT----IPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTR 164 (543)
T ss_pred cCHHHHHHHHhcCccchhHHHHhh----cCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccH
Confidence 999999999999999999999998 555567999999999999999999999999998753 3567899999999
Q ss_pred HHHHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC
Q 010196 112 DLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (515)
Q Consensus 112 ~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 190 (515)
+||.|++.+.+++.... ++.+..+.||+...-... .+..+++|+|+|||+|.+++++.
T Consensus 165 ELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~---------------------kl~k~~niliATPGRLlDHlqNt 223 (543)
T KOG0342|consen 165 ELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEAD---------------------KLVKGCNILIATPGRLLDHLQNT 223 (543)
T ss_pred HHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHH---------------------HhhccccEEEeCCchHHhHhhcC
Confidence 99999999999999888 899999999998665543 34458899999999999999998
Q ss_pred cCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 191 ~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
+.+...+++++|+||||++++.+|.+.+++|+..++.. .|.+
T Consensus 224 ~~f~~r~~k~lvlDEADrlLd~GF~~di~~Ii~~lpk~--------------------------------------rqt~ 265 (543)
T KOG0342|consen 224 SGFLFRNLKCLVLDEADRLLDIGFEEDVEQIIKILPKQ--------------------------------------RQTL 265 (543)
T ss_pred CcchhhccceeEeecchhhhhcccHHHHHHHHHhcccc--------------------------------------ceee
Confidence 88878888999999999999999999999999998733 2889
Q ss_pred EEEEEecCCchhhhhcccCC-CeeEeeCC-ccccCCcccceeEEeccCCCcHHHHHHHHHhcCC-CeEEEEcCChhhHHH
Q 010196 271 VLSATLTQDPNKLAQLDLHH-PLFLTTGE-TRYKLPERLESYKLICESKLKPLYLVALLQSLGE-EKCIVFTSSVESTHR 347 (515)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~-~~~lVf~~s~~~~~~ 347 (515)
+||||.+.++..++...+.. |..+.... ......+.+.+.++.++...++..++.++++... .++||||+|...+..
T Consensus 266 LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~ 345 (543)
T KOG0342|consen 266 LFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKF 345 (543)
T ss_pred EeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHH
Confidence 99999999999988876654 77765543 3445567788988999888889999999987765 899999999999999
Q ss_pred HHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcc
Q 010196 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (515)
Q Consensus 348 l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (515)
+++.|+.. +++|..+||++++..|..+...|+..+..||||||+++||+|+|+|++||+||+|.++++|+||+||+|
T Consensus 346 ~~~lL~~~---dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTa 422 (543)
T KOG0342|consen 346 HAELLNYI---DLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTA 422 (543)
T ss_pred HHHHHhhc---CCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhcccc
Confidence 99999854 489999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeechhHHHHHHHH
Q 010196 428 RAGQLGRCFTLLHKDEVKRFKKLL 451 (515)
Q Consensus 428 R~g~~g~~~~~~~~~d~~~~~~~~ 451 (515)
|.|..|.+++++.|.|...++.+.
T Consensus 423 R~gk~G~alL~l~p~El~Flr~LK 446 (543)
T KOG0342|consen 423 REGKEGKALLLLAPWELGFLRYLK 446 (543)
T ss_pred ccCCCceEEEEeChhHHHHHHHHh
Confidence 999999999999999998888775
No 8
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.1e-62 Score=460.38 Aligned_cols=354 Identities=30% Similarity=0.438 Sum_probs=324.7
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---cCcccEEEEcccH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt~ 111 (515)
|+...++.|+..+|..|+.+|.++|+ ..+.|+|++..|.||||||++|++|+++.|.+.+ ..|..+|||+|||
T Consensus 76 ls~~t~kgLke~~fv~~teiQ~~~Ip----~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTR 151 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFVKMTEIQRDTIP----MALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTR 151 (758)
T ss_pred CchHHHHhHhhcCCccHHHHHHhhcc----hhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchH
Confidence 99999999999999999999999955 4467999999999999999999999999998753 4578899999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCc
Q 010196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR 191 (515)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~ 191 (515)
+||.|+++.+.+.+.+.+++.+++.||........++ .+.+|+|||||+|++++....
T Consensus 152 ELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi----------------------~~mNILVCTPGRLLQHmde~~ 209 (758)
T KOG0343|consen 152 ELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI----------------------SQMNILVCTPGRLLQHMDENP 209 (758)
T ss_pred HHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh----------------------hcCCeEEechHHHHHHhhhcC
Confidence 9999999999999999999999999999866554332 456999999999999999988
Q ss_pred CCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 192 ~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
.++.+++.++|+||||+|++++|...+..|+..++.. .|+++
T Consensus 210 ~f~t~~lQmLvLDEADR~LDMGFk~tL~~Ii~~lP~~--------------------------------------RQTLL 251 (758)
T KOG0343|consen 210 NFSTSNLQMLVLDEADRMLDMGFKKTLNAIIENLPKK--------------------------------------RQTLL 251 (758)
T ss_pred CCCCCcceEEEeccHHHHHHHhHHHHHHHHHHhCChh--------------------------------------heeee
Confidence 8999999999999999999999999999999988743 38999
Q ss_pred EEEEecCCchhhhhcccCCCeeEeeCCc-cccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHH
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (515)
||||.+..+..++++.+.+|.++.+... ....|..+.++++.++...|+..|..++..+...+.|||++|++++..+++
T Consensus 252 FSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e 331 (758)
T KOG0343|consen 252 FSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYE 331 (758)
T ss_pred eecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHH
Confidence 9999999999999999999999988744 477889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCC
Q 010196 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (515)
Q Consensus 351 ~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (515)
.++.+. +++++..+||.|++..|.++.+.|.+....||+|||+++||+|||.|++||++|.|.++++|+||+||+.|.+
T Consensus 332 ~F~rlr-pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR~~ 410 (758)
T KOG0343|consen 332 AFCRLR-PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTARYK 410 (758)
T ss_pred HHHhcC-CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhccc
Confidence 998875 6799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEeechhHHHHHHHHHH
Q 010196 431 QLGRCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 431 ~~g~~~~~~~~~d~~~~~~~~~~ 453 (515)
..|.+++++.+++.+.+...++.
T Consensus 411 ~~G~sll~L~psEeE~~l~~Lq~ 433 (758)
T KOG0343|consen 411 ERGESLLMLTPSEEEAMLKKLQK 433 (758)
T ss_pred CCCceEEEEcchhHHHHHHHHHH
Confidence 99999999999995554443333
No 9
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=9.3e-63 Score=458.50 Aligned_cols=389 Identities=26% Similarity=0.407 Sum_probs=333.6
Q ss_pred CccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc
Q 010196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~ 97 (515)
|.++.+|++.+ ++.++++.+...||..|+|+|..|++ .+++.+|+|..|.||||||++|++|++.++.+.
T Consensus 241 pnplrnwEE~~------~P~e~l~~I~~~~y~eptpIqR~aip----l~lQ~rD~igvaETgsGktaaf~ipLl~~Issl 310 (673)
T KOG0333|consen 241 PNPLRNWEESG------FPLELLSVIKKPGYKEPTPIQRQAIP----LGLQNRDPIGVAETGSGKTAAFLIPLLIWISSL 310 (673)
T ss_pred CccccChhhcC------CCHHHHHHHHhcCCCCCchHHHhhcc----chhccCCeeeEEeccCCccccchhhHHHHHHcC
Confidence 45566677765 99999999999999999999999954 557799999999999999999999999998775
Q ss_pred c--------cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh
Q 010196 98 A--------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL 169 (515)
Q Consensus 98 ~--------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 169 (515)
+ ..++.++|++|||+|++|+.++-.+++..+++++..+.|+.+..++-- .+
T Consensus 311 P~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~f---------------------ql 369 (673)
T KOG0333|consen 311 PPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGF---------------------QL 369 (673)
T ss_pred CCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhh---------------------hh
Confidence 4 247889999999999999999999999999999999999999877632 35
Q ss_pred ccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhh
Q 010196 170 QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (515)
Q Consensus 170 ~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
..+|+|+|+||++|.+.+.+ ..+.++...+||+||||+|++++|.+.+..++..++..+....++...-.......+.
T Consensus 370 s~gceiviatPgrLid~Len-r~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~- 447 (673)
T KOG0333|consen 370 SMGCEIVIATPGRLIDSLEN-RYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFS- 447 (673)
T ss_pred hccceeeecCchHHHHHHHH-HHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcc-
Confidence 67899999999999999987 5567888999999999999999999999999999887654332221111111000000
Q ss_pred hhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh
Q 010196 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (515)
.. ..-.|.++||||+++.+..++..++..|+.+..+....+. ..+++.......+.|...|.+++.+
T Consensus 448 -----------~~-k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~-~rveQ~v~m~~ed~k~kkL~eil~~ 514 (673)
T KOG0333|consen 448 -----------SS-KKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPT-PRVEQKVEMVSEDEKRKKLIEILES 514 (673)
T ss_pred -----------cc-cceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCc-cchheEEEEecchHHHHHHHHHHHh
Confidence 00 0123889999999999999999999999999988765444 4566777777778889999999999
Q ss_pred cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE
Q 010196 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (515)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~ 409 (515)
....++|||+|+++.|+.|++.|...+ +.+..+||+.++++|+.+|+.|++|..+|||||+++++|||+|+|++|||
T Consensus 515 ~~~ppiIIFvN~kk~~d~lAk~LeK~g---~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin 591 (673)
T KOG0333|consen 515 NFDPPIIIFVNTKKGADALAKILEKAG---YKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN 591 (673)
T ss_pred CCCCCEEEEEechhhHHHHHHHHhhcc---ceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee
Confidence 888999999999999999999999877 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
||++++..+|+||+||+||+|+.|.+++|+++.|...|..+.+.+.
T Consensus 592 ydmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~ 637 (673)
T KOG0333|consen 592 YDMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALR 637 (673)
T ss_pred cchhhhHHHHHHHhccccccccCceeEEEeccchhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999877766666543
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.7e-61 Score=478.86 Aligned_cols=362 Identities=27% Similarity=0.424 Sum_probs=307.8
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc------cC
Q 010196 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VR 100 (515)
Q Consensus 27 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~------~~ 100 (515)
.+|+++ +|++.+.++|..+||..|+|+|.+||+.++ .|+|++++||||||||++|++|+++.+.... ..
T Consensus 8 ~~f~~~-~l~~~l~~~l~~~g~~~pt~iQ~~aip~il----~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~ 82 (423)
T PRK04837 8 QKFSDF-ALHPQVVEALEKKGFHNCTPIQALALPLTL----AGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVN 82 (423)
T ss_pred CCHhhC-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccC
Confidence 334444 399999999999999999999999988875 4999999999999999999999999886532 23
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
++++||++||++||.|+++.+..+....++++..++|+.+...+.. .+..+++|+|+||
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~---------------------~l~~~~~IlV~TP 141 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK---------------------VLESGVDILIGTT 141 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhcCCCCEEEECH
Confidence 4689999999999999999999999888999999999987665533 3446789999999
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCC
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (515)
++|.+++.. ..+.++++++||+||||++++.+|...+..++..++...
T Consensus 142 ~~l~~~l~~-~~~~l~~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~~------------------------------- 189 (423)
T PRK04837 142 GRLIDYAKQ-NHINLGAIQVVVLDEADRMFDLGFIKDIRWLFRRMPPAN------------------------------- 189 (423)
T ss_pred HHHHHHHHc-CCcccccccEEEEecHHHHhhcccHHHHHHHHHhCCCcc-------------------------------
Confidence 999999876 557789999999999999999999888888887654221
Q ss_pred CCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 010196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (515)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (515)
..+.+++|||++.....+....+.+|..+...... .....+.+.........|...+..++......++||||+
T Consensus 190 -----~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~ 263 (423)
T PRK04837 190 -----QRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFAN 263 (423)
T ss_pred -----ceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 12568999999888877777777788776654332 222334444445555677888888888777889999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhH
Q 010196 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (515)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~ 420 (515)
++..|+.+++.|...+ +.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+..+|+
T Consensus 264 t~~~~~~l~~~L~~~g---~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yi 340 (423)
T PRK04837 264 TKHRCEEIWGHLAADG---HRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYV 340 (423)
T ss_pred CHHHHHHHHHHHHhCC---CcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheE
Confidence 9999999999998766 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
||+||+||.|+.|.+++|+.+.|...+..+.+...
T Consensus 341 qR~GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~~~ 375 (423)
T PRK04837 341 HRIGRTGRAGASGHSISLACEEYALNLPAIETYIG 375 (423)
T ss_pred eccccccCCCCCeeEEEEeCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999888888866554
No 11
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.7e-62 Score=432.36 Aligned_cols=360 Identities=29% Similarity=0.451 Sum_probs=320.4
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
||++++.+.|+.+|+.+|+|+|..|+++|++ |+|+|.+|.||||||.+|.+|++++|...+ .+.-++|++|||+|
T Consensus 13 Gl~~Wlve~l~~l~i~~pTpiQ~~cIpkILe----Grdcig~AkTGsGKT~AFaLPil~rLsedP-~giFalvlTPTrEL 87 (442)
T KOG0340|consen 13 GLSPWLVEQLKALGIKKPTPIQQACIPKILE----GRDCIGCAKTGSGKTAAFALPILNRLSEDP-YGIFALVLTPTREL 87 (442)
T ss_pred CccHHHHHHHHHhcCCCCCchHhhhhHHHhc----ccccccccccCCCcchhhhHHHHHhhccCC-CcceEEEecchHHH
Confidence 6999999999999999999999999988865 999999999999999999999999999874 56679999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCc--
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-- 191 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-- 191 (515)
+.|+.+.|.-+....++++.+++|+.+.--+.. .|..+|||+|+|||++.+++..+.
T Consensus 88 A~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~---------------------~L~~rPHvVvatPGRlad~l~sn~~~ 146 (442)
T KOG0340|consen 88 ALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAA---------------------ILSDRPHVVVATPGRLADHLSSNLGV 146 (442)
T ss_pred HHHHHHHHHHhcccccceEEEEEccHHHhhhhh---------------------hcccCCCeEecCccccccccccCCcc
Confidence 999999999999999999999999988655543 456778999999999999998763
Q ss_pred -CCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 192 -GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 192 -~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
.+.+.++.++|+||||++++..|.+.++.+.+.++.. .|.+
T Consensus 147 ~~~~~~rlkflVlDEADrvL~~~f~d~L~~i~e~lP~~--------------------------------------RQtL 188 (442)
T KOG0340|consen 147 CSWIFQRLKFLVLDEADRVLAGCFPDILEGIEECLPKP--------------------------------------RQTL 188 (442)
T ss_pred chhhhhceeeEEecchhhhhccchhhHHhhhhccCCCc--------------------------------------cceE
Confidence 2457889999999999999999999999998877643 2789
Q ss_pred EEEEEecCCchhhhhcccCCC--eeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcC---CCeEEEEcCChhhH
Q 010196 271 VLSATLTQDPNKLAQLDLHHP--LFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG---EEKCIVFTSSVEST 345 (515)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~---~~~~lVf~~s~~~~ 345 (515)
+||||++.....+.......+ ..+.. ....+..+.+.+.++.++...+..+++.+++... .+.++||+++..+|
T Consensus 189 lfSATitd~i~ql~~~~i~k~~a~~~e~-~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~c 267 (442)
T KOG0340|consen 189 LFSATITDTIKQLFGCPITKSIAFELEV-IDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTREC 267 (442)
T ss_pred EEEeehhhHHHHhhcCCcccccceEEec-cCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHH
Confidence 999999988888777665553 23322 2344567788889999999999999999998653 56899999999999
Q ss_pred HHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhh
Q 010196 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425 (515)
Q Consensus 346 ~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR 425 (515)
+.++..|+.+. +.+..+|+.|++.+|...+.+|+++..+||||||+++||+|+|.|++|||+|+|.++.+|+||+||
T Consensus 268 Q~l~~~l~~le---~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGR 344 (442)
T KOG0340|consen 268 QLLSMTLKNLE---VRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGR 344 (442)
T ss_pred HHHHHHHhhhc---eeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcc
Confidence 99999999766 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeechhHHHHHHHHHHhcCCCCCc
Q 010196 426 TARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI 461 (515)
Q Consensus 426 ~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~ 461 (515)
+.|+|+.|.++.|+.+.|++.+..+++..+.+..+.
T Consensus 345 tARAGR~G~aiSivt~rDv~l~~aiE~~igkKl~e~ 380 (442)
T KOG0340|consen 345 TARAGRKGMAISIVTQRDVELLQAIEEEIGKKLTEY 380 (442)
T ss_pred hhcccCCcceEEEechhhHHHHHHHHHHHhcccccc
Confidence 999999999999999999999999999887665443
No 12
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-62 Score=421.33 Aligned_cols=360 Identities=25% Similarity=0.439 Sum_probs=324.4
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCc
Q 010196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~ 101 (515)
..|+++ +|.+++++.++..||++|+.+|+.|++.++ +|+|++++|..|+|||.+|.+.+++.+.-+ .+.
T Consensus 27 ~~F~~M------gl~edlLrgiY~yGfekPS~IQqrAi~~Il----kGrdViaQaqSGTGKTa~~si~vlq~~d~~-~r~ 95 (400)
T KOG0328|consen 27 PTFDDM------GLKEDLLRGIYAYGFEKPSAIQQRAIPQIL----KGRDVIAQAQSGTGKTATFSISVLQSLDIS-VRE 95 (400)
T ss_pred cchhhc------CchHHHHHHHHHhccCCchHHHhhhhhhhh----cccceEEEecCCCCceEEEEeeeeeecccc-cce
Confidence 356666 499999999999999999999999988775 599999999999999999999988777554 355
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCCh
Q 010196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (515)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~ 181 (515)
..++|++|||+|+.|+.+.+..++...++.+..+.||.+..+.... +.-+.+++.+||+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikk---------------------ld~G~hvVsGtPG 154 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKK---------------------LDYGQHVVSGTPG 154 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhh---------------------hcccceEeeCCCc
Confidence 6899999999999999999999999999999999999997776543 3356799999999
Q ss_pred HHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCC
Q 010196 182 RLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (515)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+.++++.+ +.+....++++|+||||.|++.+|.+.+..+++.++
T Consensus 155 rv~dmikr-~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~lp----------------------------------- 198 (400)
T KOG0328|consen 155 RVLDMIKR-RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYLP----------------------------------- 198 (400)
T ss_pred hHHHHHHh-ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhCC-----------------------------------
Confidence 99999988 567788999999999999999999999999999886
Q ss_pred CCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCC-cHHHHHHHHHhcCCCeEEEEcC
Q 010196 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTS 340 (515)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~ 340 (515)
|..|++++|||++.++.+....+..+|+.+........+ +.+.++++..+.++ |++.|+.+.....-..++||||
T Consensus 199 ---~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltl-EgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcn 274 (400)
T KOG0328|consen 199 ---PGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTL-EGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCN 274 (400)
T ss_pred ---CCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCch-hhhhhheeeechhhhhHhHHHHHhhhhehheEEEEec
Confidence 345999999999999999999999999988876655443 44677777776554 9999999999988899999999
Q ss_pred ChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhH
Q 010196 341 SVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYI 420 (515)
Q Consensus 341 s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~ 420 (515)
|+..++.+.+.+++.. +.|...||+|++++|+++++.|++|+.+||++||+.+||+|+|.+++|||||+|.+.+.|+
T Consensus 275 Tk~kVdwLtekm~~~n---ftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YI 351 (400)
T KOG0328|consen 275 TKRKVDWLTEKMREAN---FTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI 351 (400)
T ss_pred ccchhhHHHHHHHhhC---ceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHh
Confidence 9999999999998765 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 421 HRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
||+||.||.|++|.++-|+..+|+..++.+.+.+..
T Consensus 352 HRIGRSGRFGRkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 352 HRIGRSGRFGRKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred hhhccccccCCcceEEEEecHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999888754
No 13
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.5e-60 Score=482.70 Aligned_cols=369 Identities=28% Similarity=0.447 Sum_probs=313.2
Q ss_pred CCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
...|.++.+|+++. +++.++++|.++||.+|+|+|.++|+.++ .|+|++++||||||||++|++|++..+
T Consensus 123 ~~~p~p~~~f~~~~------l~~~l~~~l~~~g~~~pt~iQ~~aip~~l----~G~dvI~~ApTGSGKTlaylLP~l~~i 192 (545)
T PTZ00110 123 ENVPKPVVSFEYTS------FPDYILKSLKNAGFTEPTPIQVQGWPIAL----SGRDMIGIAETGSGKTLAFLLPAIVHI 192 (545)
T ss_pred CCCCcccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----cCCCEEEEeCCCChHHHHHHHHHHHHH
Confidence 34456666777764 89999999999999999999999998875 499999999999999999999999887
Q ss_pred hhcc----cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc
Q 010196 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (515)
Q Consensus 95 ~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (515)
...+ ..++.+|||+||++||.|+.+.+++++...++++.+++|+.+...+.. .+.
T Consensus 193 ~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~---------------------~l~ 251 (545)
T PTZ00110 193 NAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIY---------------------ALR 251 (545)
T ss_pred HhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHH---------------------HHH
Confidence 6532 236789999999999999999999999888899999999988665543 344
Q ss_pred cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhh
Q 010196 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (515)
Q Consensus 171 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
.+++|+|+||++|.+++.. ....+.++++||+||||+|++++|...+..++..+.
T Consensus 252 ~~~~IlVaTPgrL~d~l~~-~~~~l~~v~~lViDEAd~mld~gf~~~i~~il~~~~------------------------ 306 (545)
T PTZ00110 252 RGVEILIACPGRLIDFLES-NVTNLRRVTYLVLDEADRMLDMGFEPQIRKIVSQIR------------------------ 306 (545)
T ss_pred cCCCEEEECHHHHHHHHHc-CCCChhhCcEEEeehHHhhhhcchHHHHHHHHHhCC------------------------
Confidence 6789999999999999987 446788999999999999999999998888887653
Q ss_pred hccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccC-CCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh
Q 010196 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH-HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS 329 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~ 329 (515)
+..|++++|||++.....+....+. .+..+..+.........+.+....+....|...|..++..
T Consensus 307 --------------~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~ 372 (545)
T PTZ00110 307 --------------PDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQR 372 (545)
T ss_pred --------------CCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHH
Confidence 2238899999998887777666554 4666655443323334455555666667788888888876
Q ss_pred c--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEE
Q 010196 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (515)
Q Consensus 330 ~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~V 407 (515)
. ...++||||++++.|+.+++.|...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|++++|
T Consensus 373 ~~~~~~k~LIF~~t~~~a~~l~~~L~~~g---~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~V 449 (545)
T PTZ00110 373 IMRDGDKILIFVETKKGADFLTKELRLDG---WPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYV 449 (545)
T ss_pred hcccCCeEEEEecChHHHHHHHHHHHHcC---CcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEE
Confidence 5 46799999999999999999998765 788999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 408 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
|+||+|.+..+|+||+||+||.|..|.+++|+++.+...+..+.+.+..
T Consensus 450 I~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~~~~~~~l~~~l~~ 498 (545)
T PTZ00110 450 INFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDKYRLARDLVKVLRE 498 (545)
T ss_pred EEeCCCCCHHHHHHHhcccccCCCCceEEEEECcchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888877776554
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.5e-60 Score=479.77 Aligned_cols=356 Identities=26% Similarity=0.417 Sum_probs=306.1
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc------cCcccEEEEc
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVL 108 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~------~~~~~~lil~ 108 (515)
|++.++++|.++||..|+|+|.++|+.++ .|+|++++||||||||++|++|+++.+.... ...+++|||+
T Consensus 16 l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l----~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~ 91 (572)
T PRK04537 16 LHPALLAGLESAGFTRCTPIQALTLPVAL----PGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILA 91 (572)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEe
Confidence 99999999999999999999999988875 4999999999999999999999999886431 1246899999
Q ss_pred ccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHh
Q 010196 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (515)
Q Consensus 109 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 188 (515)
||++|+.|+++.+.++....++++..++|+.+...+.. .+..+++|+|+||++|++++.
T Consensus 92 PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~---------------------~l~~~~dIiV~TP~rL~~~l~ 150 (572)
T PRK04537 92 PTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRE---------------------LLQQGVDVIIATPGRLIDYVK 150 (572)
T ss_pred CcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HHhCCCCEEEECHHHHHHHHH
Confidence 99999999999999999888999999999988766543 234567999999999999987
Q ss_pred cCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCcee
Q 010196 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (515)
Q Consensus 189 ~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
....+.+..+++|||||||+|++.+|...+..++..++... ..|
T Consensus 151 ~~~~~~l~~v~~lViDEAh~lld~gf~~~i~~il~~lp~~~------------------------------------~~q 194 (572)
T PRK04537 151 QHKVVSLHACEICVLDEADRMFDLGFIKDIRFLLRRMPERG------------------------------------TRQ 194 (572)
T ss_pred hccccchhheeeeEecCHHHHhhcchHHHHHHHHHhccccc------------------------------------Cce
Confidence 75556788899999999999999999888888887664211 137
Q ss_pred eEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHH
Q 010196 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (515)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (515)
++++|||++..+..+....+..|..+....... ....+.+.........+...+..++......++||||+++..++.+
T Consensus 195 ~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~-~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l 273 (572)
T PRK04537 195 TLLFSATLSHRVLELAYEHMNEPEKLVVETETI-TAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERV 273 (572)
T ss_pred EEEEeCCccHHHHHHHHHHhcCCcEEEeccccc-cccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHH
Confidence 899999998887777777777776554433221 2233455555666677888888888877788999999999999999
Q ss_pred HHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhccc
Q 010196 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (515)
Q Consensus 349 ~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (515)
++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||
T Consensus 274 ~~~L~~~g---~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR 350 (572)
T PRK04537 274 ARTLERHG---YRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTAR 350 (572)
T ss_pred HHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhccccc
Confidence 99998766 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 429 AGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 429 ~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.|..|.+++|+.+.+...+.++.+.+.
T Consensus 351 ~G~~G~ai~~~~~~~~~~l~~i~~~~~ 377 (572)
T PRK04537 351 LGEEGDAISFACERYAMSLPDIEAYIE 377 (572)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHc
Confidence 999999999999999888888866644
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.8e-59 Score=470.22 Aligned_cols=355 Identities=31% Similarity=0.483 Sum_probs=304.5
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-----CcccEEEEc
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVVL 108 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~lil~ 108 (515)
+|++.+.++|.++||..|+|+|.++++.++. ++|++++||||||||++|++|+++.+..... ...++|||+
T Consensus 7 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~----g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~ 82 (456)
T PRK10590 7 GLSPDILRAVAEQGYREPTPIQQQAIPAVLE----GRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILT 82 (456)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEe
Confidence 3999999999999999999999999888754 8999999999999999999999999865321 234799999
Q ss_pred ccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHh
Q 010196 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (515)
Q Consensus 109 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 188 (515)
||++|+.|+.+.++.+....++.+..++|+.+...+... +...++|+|+||++|++++.
T Consensus 83 PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~---------------------l~~~~~IiV~TP~rL~~~~~ 141 (456)
T PRK10590 83 PTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMK---------------------LRGGVDVLVATPGRLLDLEH 141 (456)
T ss_pred CcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHH---------------------HcCCCcEEEEChHHHHHHHH
Confidence 999999999999999998889999999999887665432 34568999999999999887
Q ss_pred cCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCcee
Q 010196 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (515)
Q Consensus 189 ~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
. ..+.++++++||+||||++++.+|...+..++..++. ..|
T Consensus 142 ~-~~~~l~~v~~lViDEah~ll~~~~~~~i~~il~~l~~--------------------------------------~~q 182 (456)
T PRK10590 142 Q-NAVKLDQVEILVLDEADRMLDMGFIHDIRRVLAKLPA--------------------------------------KRQ 182 (456)
T ss_pred c-CCcccccceEEEeecHHHHhccccHHHHHHHHHhCCc--------------------------------------cCe
Confidence 6 4567889999999999999999988888877766532 227
Q ss_pred eEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHH
Q 010196 269 KMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (515)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (515)
.+++|||++.....+....+.+|..+...... .....+.++........+...+..++......++||||+++..++.+
T Consensus 183 ~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l 261 (456)
T PRK10590 183 NLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHL 261 (456)
T ss_pred EEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHH
Confidence 89999999888877777777777766554322 22334555555666666777777777776778999999999999999
Q ss_pred HHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhccc
Q 010196 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (515)
Q Consensus 349 ~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (515)
++.|...+ +.+..+||+|++.+|.++++.|++|+++|||||+++++|+|+|++++||+|++|.+..+|+||+||+||
T Consensus 262 ~~~L~~~g---~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR 338 (456)
T PRK10590 262 AEQLNKDG---IRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGR 338 (456)
T ss_pred HHHHHHCC---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhcccccc
Confidence 99998765 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 429 AGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 429 ~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
.|..|.+++|+...|...++.+.+.+..
T Consensus 339 ~g~~G~ai~l~~~~d~~~~~~ie~~l~~ 366 (456)
T PRK10590 339 AAATGEALSLVCVDEHKLLRDIEKLLKK 366 (456)
T ss_pred CCCCeeEEEEecHHHHHHHHHHHHHhcC
Confidence 9999999999999999888888776543
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=7.7e-59 Score=467.99 Aligned_cols=351 Identities=27% Similarity=0.419 Sum_probs=308.3
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
|++.+.++|.++||.+|+|+|.+|++.++. |+|++++||||||||++|++|+++.+... ....++||++||++|+
T Consensus 11 l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~----g~dvi~~a~TGsGKT~a~~lpil~~l~~~-~~~~~~lil~PtreLa 85 (460)
T PRK11776 11 LPPALLANLNELGYTEMTPIQAQSLPAILA----GKDVIAQAKTGSGKTAAFGLGLLQKLDVK-RFRVQALVLCPTRELA 85 (460)
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHhhhc-cCCceEEEEeCCHHHH
Confidence 999999999999999999999999988764 89999999999999999999999998653 2355799999999999
Q ss_pred HHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
.|+.++++.+.... ++++..++|+.+...+... +..+++|+|+||++|.+++.+ ..+
T Consensus 86 ~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~---------------------l~~~~~IvV~Tp~rl~~~l~~-~~~ 143 (460)
T PRK11776 86 DQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS---------------------LEHGAHIIVGTPGRILDHLRK-GTL 143 (460)
T ss_pred HHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-CCc
Confidence 99999999987654 6889999999887666433 346789999999999999987 456
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||||+|++.+|...+..++..++. ..|.+++|
T Consensus 144 ~l~~l~~lViDEad~~l~~g~~~~l~~i~~~~~~--------------------------------------~~q~ll~S 185 (460)
T PRK11776 144 DLDALNTLVLDEADRMLDMGFQDAIDAIIRQAPA--------------------------------------RRQTLLFS 185 (460)
T ss_pred cHHHCCEEEEECHHHHhCcCcHHHHHHHHHhCCc--------------------------------------ccEEEEEE
Confidence 7889999999999999999999888888877642 23789999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHh
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (515)
||++.....+....+.+|..+...... ....+.++++......+...+..++....+.++||||+++..++.+++.|.
T Consensus 186 AT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~ 263 (460)
T PRK11776 186 ATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALN 263 (460)
T ss_pred ecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHH
Confidence 999988888888888888877664432 123356666777777788899999988888899999999999999999998
Q ss_pred hcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCc
Q 010196 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (515)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (515)
..+ +.+..+||+|++.+|+.+++.|++|+.+|||||+++++|+|+|++++||+|++|.+..+|+||+||+||.|..|
T Consensus 264 ~~~---~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g~~G 340 (460)
T PRK11776 264 AQG---FSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAGSKG 340 (460)
T ss_pred hCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCCCcc
Confidence 876 88999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeechhHHHHHHHHHHhc
Q 010196 434 RCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 434 ~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.+++|+.+.|...+..+.+...
T Consensus 341 ~ai~l~~~~e~~~~~~i~~~~~ 362 (460)
T PRK11776 341 LALSLVAPEEMQRANAIEDYLG 362 (460)
T ss_pred eEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999888887766554
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=8.3e-59 Score=470.54 Aligned_cols=375 Identities=26% Similarity=0.457 Sum_probs=313.2
Q ss_pred CccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc
Q 010196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~ 97 (515)
|.++.+|+++. +++.++++|..+||..|+|+|.+||+.++ .|+|+++.||||||||++|++|++.++...
T Consensus 117 p~pi~~f~~~~------l~~~l~~~L~~~g~~~ptpiQ~~aip~il----~g~dviv~ApTGSGKTlayllPil~~l~~~ 186 (518)
T PLN00206 117 PPPILSFSSCG------LPPKLLLNLETAGYEFPTPIQMQAIPAAL----SGRSLLVSADTGSGKTASFLVPIISRCCTI 186 (518)
T ss_pred CchhcCHHhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEecCCCCccHHHHHHHHHHHHhh
Confidence 45566676664 99999999999999999999999998875 499999999999999999999999887532
Q ss_pred ------ccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc
Q 010196 98 ------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (515)
Q Consensus 98 ------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (515)
...++++|||+||++|+.|+.+.++.+....++++..++|+.....+.. .+..
T Consensus 187 ~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~---------------------~l~~ 245 (518)
T PLN00206 187 RSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLY---------------------RIQQ 245 (518)
T ss_pred ccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHH---------------------HhcC
Confidence 1246789999999999999999999998888889999999887665543 2446
Q ss_pred CCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhh
Q 010196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (515)
Q Consensus 172 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
+++|+|+||++|.+++.+ ....++++++||+||||+|++.+|...+..++..++
T Consensus 246 ~~~IiV~TPgrL~~~l~~-~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l~------------------------- 299 (518)
T PLN00206 246 GVELIVGTPGRLIDLLSK-HDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQALS------------------------- 299 (518)
T ss_pred CCCEEEECHHHHHHHHHc-CCccchheeEEEeecHHHHhhcchHHHHHHHHHhCC-------------------------
Confidence 789999999999999987 457789999999999999999999888877776542
Q ss_pred ccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcC
Q 010196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG 331 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~ 331 (515)
..|++++|||++..+..+....+.++..+..+.... ....+.+....+....+...+..++....
T Consensus 300 --------------~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~-~~~~v~q~~~~~~~~~k~~~l~~~l~~~~ 364 (518)
T PLN00206 300 --------------QPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNR-PNKAVKQLAIWVETKQKKQKLFDILKSKQ 364 (518)
T ss_pred --------------CCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCC-CCcceeEEEEeccchhHHHHHHHHHHhhc
Confidence 127899999999888888887778887776654322 22334555566666667777888876543
Q ss_pred --CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE
Q 010196 332 --EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (515)
Q Consensus 332 --~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~ 409 (515)
..++||||+++..++.+++.|... .++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 365 ~~~~~~iVFv~s~~~a~~l~~~L~~~--~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~ 442 (518)
T PLN00206 365 HFKPPAVVFVSSRLGADLLANAITVV--TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII 442 (518)
T ss_pred ccCCCEEEEcCCchhHHHHHHHHhhc--cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE
Confidence 468999999999999999999753 2378899999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhH
Q 010196 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLI 469 (515)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (515)
||+|.+..+|+||+||+||.|..|.+++|+++++...+..+.+.+.... ..+|+.+.
T Consensus 443 ~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~l~~~l~~~~---~~vp~~l~ 499 (518)
T PLN00206 443 FDMPNTIKEYIHQIGRASRMGEKGTAIVFVNEEDRNLFPELVALLKSSG---AAIPRELA 499 (518)
T ss_pred eCCCCCHHHHHHhccccccCCCCeEEEEEEchhHHHHHHHHHHHHHHcC---CCCCHHHH
Confidence 9999999999999999999999999999999999888888877665422 34555443
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.7e-58 Score=471.27 Aligned_cols=353 Identities=26% Similarity=0.439 Sum_probs=307.2
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+|++.++++|.++||.+|+|+|.++|+.++. ++|++++||||||||++|++|+++.+... ...+++||++||++|
T Consensus 12 ~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~----g~dvl~~ApTGsGKT~af~lpll~~l~~~-~~~~~~LIL~PTreL 86 (629)
T PRK11634 12 GLKAPILEALNDLGYEKPSPIQAECIPHLLN----GRDVLGMAQTGSGKTAAFSLPLLHNLDPE-LKAPQILVLAPTREL 86 (629)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHHHHHHHHHHHHhhhc-cCCCeEEEEeCcHHH
Confidence 3999999999999999999999999988754 89999999999999999999999988653 345689999999999
Q ss_pred HHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+.|+++.+.++.... ++.+..++|+.+...+.. .+..+++|+|+||++|++++.+ ..
T Consensus 87 a~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~---------------------~l~~~~~IVVgTPgrl~d~l~r-~~ 144 (629)
T PRK11634 87 AVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR---------------------ALRQGPQIVVGTPGRLLDHLKR-GT 144 (629)
T ss_pred HHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHH---------------------HhcCCCCEEEECHHHHHHHHHc-CC
Confidence 999999999987655 789999999987766543 2446789999999999999987 55
Q ss_pred CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
+.++++++||+||||+|++++|.+.+..++..++. ..+.+++
T Consensus 145 l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~~lp~--------------------------------------~~q~llf 186 (629)
T PRK11634 145 LDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPE--------------------------------------GHQTALF 186 (629)
T ss_pred cchhhceEEEeccHHHHhhcccHHHHHHHHHhCCC--------------------------------------CCeEEEE
Confidence 77899999999999999999999989888877642 2378999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (515)
|||++.....+...++.+|..+......... ..+.+.++......|...+..++......++||||+++..++.+++.|
T Consensus 187 SAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~-~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L 265 (629)
T PRK11634 187 SATMPEAIRRITRRFMKEPQEVRIQSSVTTR-PDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEAL 265 (629)
T ss_pred EccCChhHHHHHHHHcCCCeEEEccCccccC-CceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHH
Confidence 9999998888888888888777654433222 234455556666678888888888777789999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
...+ +.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|++++||+||+|.+..+|+||+||+||.|+.
T Consensus 266 ~~~g---~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr~ 342 (629)
T PRK11634 266 ERNG---YNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRA 342 (629)
T ss_pred HhCC---CCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCCc
Confidence 8766 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeechhHHHHHHHHHHhc
Q 010196 433 GRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 433 g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
|.+++|+.+.|...++.+.+...
T Consensus 343 G~ai~~v~~~e~~~l~~ie~~~~ 365 (629)
T PRK11634 343 GRALLFVENRERRLLRNIERTMK 365 (629)
T ss_pred ceEEEEechHHHHHHHHHHHHhC
Confidence 99999999999888888766543
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=1.1e-58 Score=464.29 Aligned_cols=354 Identities=30% Similarity=0.460 Sum_probs=301.2
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---cCcccEEEEccc
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPT 110 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt 110 (515)
++++.+++.|.++||.+|+++|.++++.++. |+|++++||||+|||++|++|+++.+.... ...+++||++||
T Consensus 7 ~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~----g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt 82 (434)
T PRK11192 7 ELDESLLEALQDKGYTRPTAIQAEAIPPALD----GRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPT 82 (434)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCc
Confidence 3999999999999999999999999988764 899999999999999999999999886532 224689999999
Q ss_pred HHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC
Q 010196 111 RDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT 190 (515)
Q Consensus 111 ~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~ 190 (515)
++|+.|+++.+..++...++++..++|+.....+... +..+++|+|+||++|++++..
T Consensus 83 ~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~---------------------l~~~~~IlV~Tp~rl~~~~~~- 140 (434)
T PRK11192 83 RELAMQVADQARELAKHTHLDIATITGGVAYMNHAEV---------------------FSENQDIVVATPGRLLQYIKE- 140 (434)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHc-
Confidence 9999999999999999899999999999887665432 345679999999999999887
Q ss_pred cCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 191 ~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
..+.+.++++||+||||+|++++|...+..+...+.. ..|.+
T Consensus 141 ~~~~~~~v~~lViDEah~~l~~~~~~~~~~i~~~~~~--------------------------------------~~q~~ 182 (434)
T PRK11192 141 ENFDCRAVETLILDEADRMLDMGFAQDIETIAAETRW--------------------------------------RKQTL 182 (434)
T ss_pred CCcCcccCCEEEEECHHHHhCCCcHHHHHHHHHhCcc--------------------------------------ccEEE
Confidence 5577889999999999999999998888887765431 12789
Q ss_pred EEEEEecCC-chhhhhcccCCCeeEeeCCccccCCcccceeEEecc-CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHH
Q 010196 271 VLSATLTQD-PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRL 348 (515)
Q Consensus 271 ~~SaT~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l 348 (515)
++|||++.. ...+....+.+|..+........ ...+.++..... ...+...+..++......++||||+++.+++.+
T Consensus 183 ~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l 261 (434)
T PRK11192 183 LFSATLEGDAVQDFAERLLNDPVEVEAEPSRRE-RKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHEL 261 (434)
T ss_pred EEEeecCHHHHHHHHHHHccCCEEEEecCCccc-ccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHH
Confidence 999999753 55566666777777655443322 233445444443 356778888888776778999999999999999
Q ss_pred HHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhccc
Q 010196 349 CTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (515)
Q Consensus 349 ~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (515)
++.|...+ +.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||+||+|.+...|+||+||+||
T Consensus 262 ~~~L~~~~---~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR 338 (434)
T PRK11192 262 AGWLRKAG---INCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGR 338 (434)
T ss_pred HHHHHhCC---CCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhccccccc
Confidence 99998765 889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 429 AGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 429 ~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.|..|.++++++..|...+.++.+...
T Consensus 339 ~g~~g~ai~l~~~~d~~~~~~i~~~~~ 365 (434)
T PRK11192 339 AGRKGTAISLVEAHDHLLLGKIERYIE 365 (434)
T ss_pred CCCCceEEEEecHHHHHHHHHHHHHHh
Confidence 999999999999999988888766443
No 20
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.3e-59 Score=424.66 Aligned_cols=384 Identities=29% Similarity=0.426 Sum_probs=325.4
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc-----ccCcccEEEEc
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVL 108 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~~lil~ 108 (515)
+|++.+++++.+.||+.|+-+|+.||+-+ +.|+|++..|.||||||.+|++|+++.+... ...++.++|++
T Consensus 25 gLD~RllkAi~~lG~ekpTlIQs~aIpla----LEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLv 100 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEKPTLIQSSAIPLA----LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILV 100 (569)
T ss_pred CCCHHHHHHHHHhCcCCcchhhhcccchh----hcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEe
Confidence 59999999999999999999999996655 5699999999999999999999999998664 34578899999
Q ss_pred ccHHHHHHHHHHHHHhccccC--cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHH
Q 010196 109 PTRDLALQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (515)
Q Consensus 109 Pt~~L~~q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 186 (515)
||++||.|+++.+.++...+. +++.-+.++.+..... ..|.+.|+|+|+||++++.+
T Consensus 101 PTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~---------------------~~L~d~pdIvV~TP~~ll~~ 159 (569)
T KOG0346|consen 101 PTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNS---------------------VALMDLPDIVVATPAKLLRH 159 (569)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHH---------------------HHHccCCCeEEeChHHHHHH
Confidence 999999999999998866553 3443333333322221 23456789999999999999
Q ss_pred HhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCc
Q 010196 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (515)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
+.......+..++++|+||||.+++.||.+.+..+...++ +.
T Consensus 160 ~~~~~~~~~~~l~~LVvDEADLllsfGYeedlk~l~~~LP--------------------------------------r~ 201 (569)
T KOG0346|consen 160 LAAGVLEYLDSLSFLVVDEADLLLSFGYEEDLKKLRSHLP--------------------------------------RI 201 (569)
T ss_pred HhhccchhhhheeeEEechhhhhhhcccHHHHHHHHHhCC--------------------------------------ch
Confidence 9875545678899999999999999999999999998886 33
Q ss_pred eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHH-hcCCCeEEEEcCChhhH
Q 010196 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVEST 345 (515)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~ 345 (515)
+|.++||||++.++..+-++.+.+|+++.......+.+..+.+|.+.|+..+|+..++.+++ +.-.++.|||+|+.+.|
T Consensus 202 ~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~ 281 (569)
T KOG0346|consen 202 YQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRC 281 (569)
T ss_pred hhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhh
Confidence 48899999999999999999999999998888877788999999999999999999999887 45689999999999999
Q ss_pred HHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC--------------------------------
Q 010196 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-------------------------------- 393 (515)
Q Consensus 346 ~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-------------------------------- 393 (515)
..+.-.|.++| ++.++++|.+|...|..+++.|+.|-.+++||||
T Consensus 282 YrLkLfLeqFG---iksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D 358 (569)
T KOG0346|consen 282 YRLKLFLEQFG---IKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLD 358 (569)
T ss_pred HHHHHHHHHhC---cHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccC
Confidence 99999999988 9999999999999999999999999999999999
Q ss_pred ---CccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHH---HHHHHHHHhcC----CCCCccC
Q 010196 394 ---AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK---RFKKLLQKADN----DSCPIHS 463 (515)
Q Consensus 394 ---~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~---~~~~~~~~~~~----~~~~~~~ 463 (515)
-.+||||+.+|+.|+|||+|.++.+|+||+||++|++++|.++.|+.|.+.. .++.+...... +....-.
T Consensus 359 ~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~~~~~~~qilqPY~ 438 (569)
T KOG0346|consen 359 KESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDENRQEGRQILQPYQ 438 (569)
T ss_pred chhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhHHhhcCcccccccc
Confidence 1679999999999999999999999999999999999999999999999876 44444443211 1112234
Q ss_pred CChhhHhhhHHHHHHHHHHH
Q 010196 464 IPSSLIESLRPVYKSALDKL 483 (515)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~ 483 (515)
+..+.++.|+...+.+.+++
T Consensus 439 f~~eevesfryR~eD~~rav 458 (569)
T KOG0346|consen 439 FRMEEVESFRYRAEDALRAV 458 (569)
T ss_pred chHHHHHHHHHHHHHHHHHH
Confidence 45567777877777666543
No 21
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6e-60 Score=441.89 Aligned_cols=389 Identities=31% Similarity=0.453 Sum_probs=316.8
Q ss_pred CCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCC-CCEEEECCCCchhHHHhHHHHHHH
Q 010196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQT 93 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~-~~~ii~a~TGsGKT~~~~~~~~~~ 93 (515)
-+.+.++++|.++. ++++++++|..+||..|+++|...++.++. | .|++..|.||||||++|.+|+++.
T Consensus 174 ~~~~~DvsAW~~l~------lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~----gk~DIlGaAeTGSGKTLAFGIPiv~~ 243 (731)
T KOG0347|consen 174 DSSKVDVSAWKNLF------LPMEILRALSNLGFSRPTEIQSLVLPAAIR----GKVDILGAAETGSGKTLAFGIPIVER 243 (731)
T ss_pred cccccChHHHhcCC------CCHHHHHHHHhcCCCCCccchhhcccHhhc----cchhcccccccCCCceeeecchhhhh
Confidence 35677888899885 999999999999999999999999776653 6 899999999999999999999995
Q ss_pred hhhc----------ccCccc--EEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCC
Q 010196 94 LSNR----------AVRCLR--ALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161 (515)
Q Consensus 94 l~~~----------~~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (515)
+... ....++ +||++|||+||.|+.+.+...++..++++..++||.+..++.+-
T Consensus 244 l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRl-------------- 309 (731)
T KOG0347|consen 244 LLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRL-------------- 309 (731)
T ss_pred hhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHH--------------
Confidence 5332 122344 99999999999999999999999999999999999998888653
Q ss_pred chhHHHhhccCCcEEEeCChHHHHHHhcCcCC--CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCcccc
Q 010196 162 PEDVLQELQSAVDILVATPGRLMDHINATRGF--TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239 (515)
Q Consensus 162 ~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~--~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 239 (515)
+...|+|||+|||+|+.++...... ++.+++++|+||+|+|++.++.+.+..++..+.....
T Consensus 310 -------L~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~--------- 373 (731)
T KOG0347|consen 310 -------LNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQK--------- 373 (731)
T ss_pred -------HhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhc---------
Confidence 3456799999999999999875542 6788999999999999999999999999988762211
Q ss_pred ccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchh---------------------hhh-cc-cCCCeeEee
Q 010196 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK---------------------LAQ-LD-LHHPLFLTT 296 (515)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~---------------------~~~-~~-~~~~~~~~~ 296 (515)
.+..|.++||||++-.... +.. .. ...|.++..
T Consensus 374 ------------------------~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~ 429 (731)
T KOG0347|consen 374 ------------------------NRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDL 429 (731)
T ss_pred ------------------------ccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEec
Confidence 1334899999998732110 111 11 223455554
Q ss_pred CCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHH
Q 010196 297 GETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 376 (515)
.... .....+....+.|+..+|-.+|+.+|..+ ++++|||||+++.+.+|+-+|.... +....+|+.|.+++|.+
T Consensus 430 t~q~-~ta~~l~Es~I~C~~~eKD~ylyYfl~ry-PGrTlVF~NsId~vKRLt~~L~~L~---i~p~~LHA~M~QKqRLk 504 (731)
T KOG0347|consen 430 TPQS-ATASTLTESLIECPPLEKDLYLYYFLTRY-PGRTLVFCNSIDCVKRLTVLLNNLD---IPPLPLHASMIQKQRLK 504 (731)
T ss_pred Ccch-hHHHHHHHHhhcCCccccceeEEEEEeec-CCceEEEechHHHHHHHHHHHhhcC---CCCchhhHHHHHHHHHH
Confidence 4332 22334445556677777777777777765 5899999999999999999998765 89999999999999999
Q ss_pred HHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 377 ~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
.+++|++....||||||+++||+|||+|+|||||..|.+.+.|+||.||++|++..|..++++.|.++..+.++.+.+..
T Consensus 505 nLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL~ktL~k 584 (731)
T KOG0347|consen 505 NLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKLCKTLKK 584 (731)
T ss_pred hHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeecCCccceeEecccccccccCCCeEEEEeChHHhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred CC-CCccCCChhhHhhh
Q 010196 457 DS-CPIHSIPSSLIESL 472 (515)
Q Consensus 457 ~~-~~~~~~~~~~~~~~ 472 (515)
.. .++..+.....+.+
T Consensus 585 ~~dlpifPv~~~~m~~l 601 (731)
T KOG0347|consen 585 KEDLPIFPVETDIMDAL 601 (731)
T ss_pred ccCCCceeccHHHHHHH
Confidence 43 33333333333333
No 22
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.6e-59 Score=421.91 Aligned_cols=368 Identities=29% Similarity=0.449 Sum_probs=319.9
Q ss_pred CCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
+-|.+++.|++.- .-.|++.+.+++.||.+|+|+|.+||+-+ ++|.|++..|.||+|||++|++|.+-++.
T Consensus 213 pIPnP~ctFddAF-----q~~pevmenIkK~GFqKPtPIqSQaWPI~----LQG~DliGVAQTgtgKtL~~L~pg~ihi~ 283 (629)
T KOG0336|consen 213 PIPNPVCTFDDAF-----QCYPEVMENIKKTGFQKPTPIQSQAWPIL----LQGIDLIGVAQTGTGKTLAFLLPGFIHID 283 (629)
T ss_pred cCCCCcCcHHHHH-----hhhHHHHHHHHhccCCCCCcchhccccee----ecCcceEEEEecCCCcCHHHhccceeeee
Confidence 3455555555543 57789999999999999999999998755 56999999999999999999999887664
Q ss_pred hc-----ccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc
Q 010196 96 NR-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (515)
Q Consensus 96 ~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (515)
.. ...++.+|+++||++|+.|+.-+..++.-. +....+++|+.+..++... ++
T Consensus 284 aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn-g~ksvc~ygggnR~eqie~---------------------lk 341 (629)
T KOG0336|consen 284 AQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN-GLKSVCVYGGGNRNEQIED---------------------LK 341 (629)
T ss_pred ccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc-CcceEEEecCCCchhHHHH---------------------Hh
Confidence 32 245789999999999999999888887654 6788889999888877654 56
Q ss_pred cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhh
Q 010196 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (515)
Q Consensus 171 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
.+.+|+++||++|.++... ..+++..+.+||+||||+|++++|...+..|+-...
T Consensus 342 rgveiiiatPgrlndL~~~-n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiR------------------------ 396 (629)
T KOG0336|consen 342 RGVEIIIATPGRLNDLQMD-NVINLASITYLVLDEADRMLDMGFEPQIRKILLDIR------------------------ 396 (629)
T ss_pred cCceEEeeCCchHhhhhhc-CeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcC------------------------
Confidence 7889999999999998876 567899999999999999999999999998886554
Q ss_pred hccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc
Q 010196 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 330 (515)
|..|+++.|||++..+..++..++++|.++..+.-....-..+.+..+.....+|.+.+..+++..
T Consensus 397 --------------PDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~m 462 (629)
T KOG0336|consen 397 --------------PDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANM 462 (629)
T ss_pred --------------CcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhc
Confidence 445899999999999999999999999999887766555566777777777777887777777765
Q ss_pred -CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE
Q 010196 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (515)
Q Consensus 331 -~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~ 409 (515)
...|+||||.++..|+.|..-|.-.+ +.+..+||+-.+.+|+..++.|++|+++|||+||++++|+|+|+++||++
T Consensus 463 s~ndKvIiFv~~K~~AD~LSSd~~l~g---i~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N 539 (629)
T KOG0336|consen 463 SSNDKVIIFVSRKVMADHLSSDFCLKG---ISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN 539 (629)
T ss_pred CCCceEEEEEechhhhhhccchhhhcc---cchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec
Confidence 46799999999999999988887655 88899999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
||+|.+.+.|+||+||+||+|+.|.++.|+...|-.++..+++.+..
T Consensus 540 yDFP~nIeeYVHRvGrtGRaGr~G~sis~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336|consen 540 YDFPRNIEEYVHRVGRTGRAGRTGTSISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred cCCCccHHHHHHHhcccccCCCCcceEEEEehhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988887654
No 23
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.6e-59 Score=432.51 Aligned_cols=376 Identities=34% Similarity=0.502 Sum_probs=313.5
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---
Q 010196 23 LFEDCPLDHLPCLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (515)
Q Consensus 23 ~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--- 98 (515)
.|....|..+ ||++.+.+.|.. |++..||.+|.++|+.++. |+|++|.++||||||++|++|+++.|....
T Consensus 132 ~fts~~f~~L-GL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~----grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki 206 (708)
T KOG0348|consen 132 PFTSAAFASL-GLHPHLVSHLNTKMKISAPTSVQKQAIPVLLE----GRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKI 206 (708)
T ss_pred ccccccchhc-CCCHHHHHHHHHHhccCccchHhhcchhhhhc----CcceEEEcCCCCcccHHHHHHHHHHHHhcCccc
Confidence 4666666666 799999999997 7999999999999887754 999999999999999999999999997743
Q ss_pred --cCcccEEEEcccHHHHHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcE
Q 010196 99 --VRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (515)
Q Consensus 99 --~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I 175 (515)
..|+-+||++|||+||.|+++.+.++...+ .+-.+.+.||......- ..++.+++|
T Consensus 207 ~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEK---------------------ARLRKGiNI 265 (708)
T KOG0348|consen 207 QRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEK---------------------ARLRKGINI 265 (708)
T ss_pred cccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHH---------------------HHHhcCceE
Confidence 347789999999999999999999998655 45557777876543322 457899999
Q ss_pred EEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhcccc
Q 010196 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (515)
Q Consensus 176 vv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (515)
+|+|||+|++++.+...+.++.+++||+||+|++++.||++.+..|+..+......
T Consensus 266 LIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~v~~~~~~------------------------ 321 (708)
T KOG0348|consen 266 LIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKAVHSIQNA------------------------ 321 (708)
T ss_pred EEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHHHhhccch------------------------
Confidence 99999999999999888999999999999999999999999999999887431100
Q ss_pred ccCCCC-CCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC------------------------ccccCCccccee
Q 010196 256 ERGFKD-KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE------------------------TRYKLPERLESY 310 (515)
Q Consensus 256 ~~~~~~-~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~ 310 (515)
.+.. ...+..|.+++|||++..+..++...+.+|+.+..+. ....+|+.+.+.
T Consensus 322 --e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qr 399 (708)
T KOG0348|consen 322 --ECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQR 399 (708)
T ss_pred --hcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhc
Confidence 0000 1112457899999999999999999999999887211 113456667777
Q ss_pred EEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcC-------------------CCceeEEEccC
Q 010196 311 KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFG-------------------ELRIKIKEYSG 367 (515)
Q Consensus 311 ~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~-------------------~~~~~v~~~~~ 367 (515)
+..++..-++..|..+|.+ ....++|||+++.+.++.=+..|.+.. ..+.++..+||
T Consensus 400 y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHG 479 (708)
T KOG0348|consen 400 YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHG 479 (708)
T ss_pred eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecC
Confidence 8888888888777777654 356799999999999998888875521 13457899999
Q ss_pred ccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHH
Q 010196 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRF 447 (515)
Q Consensus 368 ~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~ 447 (515)
+|.+++|..+++.|....-.||+|||+++||+|+|+|.+||+||.|.++.+|+||+||+.|+|..|.+++|+.|.|.+.+
T Consensus 480 sm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~ 559 (708)
T KOG0348|consen 480 SMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYV 559 (708)
T ss_pred chhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHH
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999998854
Q ss_pred HHH
Q 010196 448 KKL 450 (515)
Q Consensus 448 ~~~ 450 (515)
..+
T Consensus 560 ~~l 562 (708)
T KOG0348|consen 560 NYL 562 (708)
T ss_pred HHH
Confidence 444
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1e-56 Score=453.50 Aligned_cols=358 Identities=29% Similarity=0.428 Sum_probs=304.8
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc------CcccEEEE
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV------RCLRALVV 107 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~------~~~~~lil 107 (515)
+|++.+.++|.++||..|+++|.++|+.++ .|+|+++.+|||||||++|++|+++.+.+... ..+++|||
T Consensus 93 ~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~----~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil 168 (475)
T PRK01297 93 NLAPELMHAIHDLGFPYCTPIQAQVLGYTL----AGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALII 168 (475)
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHh----CCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEE
Confidence 499999999999999999999999988875 49999999999999999999999999876431 14689999
Q ss_pred cccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHH
Q 010196 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (515)
Q Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 187 (515)
+||++|+.|+++.++.+....++++..++|+.+...+...+ ....++|+|+||++|++++
T Consensus 169 ~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~--------------------~~~~~~Iiv~TP~~Ll~~~ 228 (475)
T PRK01297 169 APTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQL--------------------EARFCDILVATPGRLLDFN 228 (475)
T ss_pred eCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHH--------------------hCCCCCEEEECHHHHHHHH
Confidence 99999999999999999988899999999998766654432 1345799999999999988
Q ss_pred hcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCce
Q 010196 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
.+ ....++++++|||||||++++.++...+..++....... ..
T Consensus 229 ~~-~~~~l~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~------------------------------------~~ 271 (475)
T PRK01297 229 QR-GEVHLDMVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKE------------------------------------ER 271 (475)
T ss_pred Hc-CCcccccCceEEechHHHHHhcccHHHHHHHHHhCCCCC------------------------------------Cc
Confidence 76 345688999999999999999888887877776653211 12
Q ss_pred eeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHH
Q 010196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (515)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (515)
+++++|||++.+...+....+.+|..+....... ....+.+........++...+..++......++||||+++..++.
T Consensus 272 q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~ 350 (475)
T PRK01297 272 QTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENV-ASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRR 350 (475)
T ss_pred eEEEEEeecCHHHHHHHHHhccCCEEEEeccCcC-CCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHH
Confidence 7899999998888888887777887765544332 223344555555666778888888887777899999999999999
Q ss_pred HHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcc
Q 010196 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (515)
Q Consensus 348 l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (515)
+++.|...+ +.+..+||++++++|.++++.|++|++++||||+++++|||+|++++||+|++|.+..+|+||+||+|
T Consensus 351 l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaG 427 (475)
T PRK01297 351 IEERLVKDG---INAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTG 427 (475)
T ss_pred HHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccC
Confidence 999998765 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 428 R~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
|.|.+|.+++|++++|...+..+.+.+..
T Consensus 428 R~g~~g~~i~~~~~~d~~~~~~~~~~~~~ 456 (475)
T PRK01297 428 RAGASGVSISFAGEDDAFQLPEIEELLGR 456 (475)
T ss_pred CCCCCceEEEEecHHHHHHHHHHHHHhCC
Confidence 99999999999999988777887666543
No 25
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.4e-59 Score=407.02 Aligned_cols=371 Identities=26% Similarity=0.454 Sum_probs=332.9
Q ss_pred ccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc
Q 010196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~ 98 (515)
.++.+.....|+++ +|.++++..+.+.||+.|+|+|+++++ ..+.|+|++..|..|+|||.+|++|+++.+...
T Consensus 77 ~DVt~TkG~efEd~-~Lkr~LLmgIfe~G~ekPSPiQeesIP----iaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~- 150 (459)
T KOG0326|consen 77 EDVTATKGNEFEDY-CLKRELLMGIFEKGFEKPSPIQEESIP----IALTGRDILARAKNGTGKTAAYCIPVLEKIDPK- 150 (459)
T ss_pred cccccccCccHHHh-hhhHHHHHHHHHhccCCCCCccccccc----eeecchhhhhhccCCCCCccceechhhhhcCcc-
Confidence 44455556666665 599999999999999999999999955 446799999999999999999999999998764
Q ss_pred cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEe
Q 010196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (515)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~ 178 (515)
.....++|++|||+||-|+...++++.+++++.|...+||++..+..- .+..+.+++|+
T Consensus 151 ~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~---------------------Rl~~~VH~~vg 209 (459)
T KOG0326|consen 151 KNVIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIM---------------------RLNQTVHLVVG 209 (459)
T ss_pred ccceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccccccee---------------------eecCceEEEEc
Confidence 456789999999999999999999999999999999999999776643 34567899999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
||++.+++..+ +.-.+++..++|+||||.+++..|...++.++..++...
T Consensus 210 TPGRIlDL~~K-gVa~ls~c~~lV~DEADKlLs~~F~~~~e~li~~lP~~r----------------------------- 259 (459)
T KOG0326|consen 210 TPGRILDLAKK-GVADLSDCVILVMDEADKLLSVDFQPIVEKLISFLPKER----------------------------- 259 (459)
T ss_pred CChhHHHHHhc-ccccchhceEEEechhhhhhchhhhhHHHHHHHhCCccc-----------------------------
Confidence 99999999987 445788999999999999999999999999999887433
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEE
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (515)
|.+++|||.+-.+..+....+..|..+..-.. -....+.+|+..+....|...|-.++.+..-+..|||
T Consensus 260 ---------QillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIF 328 (459)
T KOG0326|consen 260 ---------QILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIF 328 (459)
T ss_pred ---------eeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEE
Confidence 88999999999999999999999988876443 2345678899999999999999999998888999999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhh
Q 010196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (515)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~ 418 (515)
|||...++.+++.+.+.| +.+..+|+.|.++.|..+...|++|.++.|||||.+.||||++++++|||||+|++.++
T Consensus 329 CNS~~rVELLAkKITelG---yscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEt 405 (459)
T KOG0326|consen 329 CNSTNRVELLAKKITELG---YSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAET 405 (459)
T ss_pred eccchHhHHHHHHHHhcc---chhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHH
Confidence 999999999999999877 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcCCCCC
Q 010196 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCP 460 (515)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~ 460 (515)
|+||+||.||+|..|.++.+++-+|...+.++++++...-.+
T Consensus 406 YLHRIGRsGRFGhlGlAInLityedrf~L~~IE~eLGtEI~p 447 (459)
T KOG0326|consen 406 YLHRIGRSGRFGHLGLAINLITYEDRFNLYRIEQELGTEIKP 447 (459)
T ss_pred HHHHccCCccCCCcceEEEEEehhhhhhHHHHHHHhcccccc
Confidence 999999999999999999999999999999999998765433
No 26
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-57 Score=425.79 Aligned_cols=357 Identities=29% Similarity=0.436 Sum_probs=305.3
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc---------CcccE
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---------RCLRA 104 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~---------~~~~~ 104 (515)
.+.+.+..+++..||..|+|+|+.+++.+ ..|++++++|+||||||.+|++|++.++.+... ..+++
T Consensus 80 ~l~~~l~~ni~~~~~~~ptpvQk~sip~i----~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~ 155 (482)
T KOG0335|consen 80 ILGEALAGNIKRSGYTKPTPVQKYSIPII----SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRA 155 (482)
T ss_pred chhHHHhhccccccccCCCcceeecccee----ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCce
Confidence 48888999999999999999999995554 569999999999999999999999999987532 25899
Q ss_pred EEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHH
Q 010196 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (515)
Q Consensus 105 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~ 184 (515)
+|++|||+|+.|++++.+++....++++...+|+.+...+.. .+..+++|+|+||++|.
T Consensus 156 lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~---------------------~~~~gcdIlvaTpGrL~ 214 (482)
T KOG0335|consen 156 LILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLR---------------------FIKRGCDILVATPGRLK 214 (482)
T ss_pred EEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhh---------------------hhccCccEEEecCchhh
Confidence 999999999999999999999998999999999987766643 34578999999999999
Q ss_pred HHHhcCcCCCCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCC
Q 010196 185 DHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (515)
Q Consensus 185 ~~l~~~~~~~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
+++.. +.+.+++++++|+||||+|+| ++|...+..|+........
T Consensus 215 d~~e~-g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~--------------------------------- 260 (482)
T KOG0335|consen 215 DLIER-GKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPK--------------------------------- 260 (482)
T ss_pred hhhhc-ceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCc---------------------------------
Confidence 99987 668899999999999999999 9999999999987654321
Q ss_pred CCceeeEEEEEEecCCchhhhhcccCC-CeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcC----CC-----
Q 010196 264 YPRLVKMVLSATLTQDPNKLAQLDLHH-PLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG----EE----- 333 (515)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~----~~----- 333 (515)
...|.++||||.+.....++..++.+ ...+..+... .....+.+....+....|...|++++.... .+
T Consensus 261 -~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e 338 (482)
T KOG0335|consen 261 -NNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWE 338 (482)
T ss_pred -cceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccc
Confidence 23488999999999888877777776 3333333222 234456666677778888889999887443 23
Q ss_pred eEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC
Q 010196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (515)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p 413 (515)
+++|||.+++.+..+...|...+ +++..+||+-++.+|.+.++.|+.|.+.+||||++++||+|+|+|++||+||+|
T Consensus 339 ~tlvFvEt~~~~d~l~~~l~~~~---~~~~sIhg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP 415 (482)
T KOG0335|consen 339 KTLVFVETKRGADELAAFLSSNG---YPAKSIHGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMP 415 (482)
T ss_pred eEEEEeeccchhhHHHHHHhcCC---CCceeecchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecC
Confidence 89999999999999999999876 899999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHh
Q 010196 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (515)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~ 454 (515)
.+..+|+||+||+||.|+.|.++.|++..+....+.+.+.+
T Consensus 416 ~d~d~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l 456 (482)
T KOG0335|consen 416 ADIDDYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEIL 456 (482)
T ss_pred cchhhHHHhccccccCCCCceeEEEeccccchhHHHHHHHH
Confidence 99999999999999999999999999976655555554443
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=5e-55 Score=435.17 Aligned_cols=377 Identities=23% Similarity=0.397 Sum_probs=305.6
Q ss_pred hhhcccCCccCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchh
Q 010196 3 EAKKKSMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGK 82 (515)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGK 82 (515)
+.+.++-+.+.-.... .+.+|+++. +++.+.+++..+||..|+|+|.+||+.++. ++|+++.|||||||
T Consensus 10 ~~~~~~~~~~~~~~~~-~~~~~~~l~------l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~----~~d~ii~apTGsGK 78 (401)
T PTZ00424 10 SEQVASTGTIESNYDE-IVDSFDALK------LNEDLLRGIYSYGFEKPSAIQQRGIKPILD----GYDTIGQAQSGTGK 78 (401)
T ss_pred hhhccccccccccccc-ccCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChH
Confidence 4445555444433333 234555553 999999999999999999999999888754 89999999999999
Q ss_pred HHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCc
Q 010196 83 TLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDP 162 (515)
Q Consensus 83 T~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (515)
|++|++|+++.+... ..+.++||++|+++|+.|+.+.+..++...++.+..+.|+....+...
T Consensus 79 T~~~~l~~l~~~~~~-~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------- 141 (401)
T PTZ00424 79 TATFVIAALQLIDYD-LNACQALILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDIN---------------- 141 (401)
T ss_pred HHHHHHHHHHHhcCC-CCCceEEEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHH----------------
Confidence 999999999887543 345689999999999999999999998877888888888877655432
Q ss_pred hhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccc
Q 010196 163 EDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242 (515)
Q Consensus 163 ~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 242 (515)
.+..+++|+|+||+++.+.+.+ ..+.++++++||+||||++++.++...+..++....
T Consensus 142 -----~~~~~~~Ivv~Tp~~l~~~l~~-~~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~~~---------------- 199 (401)
T PTZ00424 142 -----KLKAGVHMVVGTPGRVYDMIDK-RHLRVDDLKLFILDEADEMLSRGFKGQIYDVFKKLP---------------- 199 (401)
T ss_pred -----HHcCCCCEEEECcHHHHHHHHh-CCcccccccEEEEecHHHHHhcchHHHHHHHHhhCC----------------
Confidence 2345679999999999998876 446688999999999999998888777766665442
Q ss_pred cccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccC-CCcHH
Q 010196 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPL 321 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~ 321 (515)
+..+++++|||++..........+..|..+........ ...+.++...... ..+..
T Consensus 200 ----------------------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 256 (401)
T PTZ00424 200 ----------------------PDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELT-LEGIRQFYVAVEKEEWKFD 256 (401)
T ss_pred ----------------------CCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcc-cCCceEEEEecChHHHHHH
Confidence 23488999999988777666666666765544332222 2333444444332 33556
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCC
Q 010196 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (515)
Q Consensus 322 ~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi 401 (515)
.+..++......++||||+++.+++.+++.|...+ ..+..+||++++.+|..+++.|++|+++|||||+++++|+|+
T Consensus 257 ~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~---~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDi 333 (401)
T PTZ00424 257 TLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERD---FTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDV 333 (401)
T ss_pred HHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCC---CcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCc
Confidence 66777776677899999999999999999998765 789999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 402 ~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
|++++||++++|.+...|+||+||+||.|+.|.|++|++++|...+.++.+...
T Consensus 334 p~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~e~~~~ 387 (401)
T PTZ00424 334 QQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEIERHYN 387 (401)
T ss_pred ccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999998888876654
No 28
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.4e-55 Score=405.37 Aligned_cols=369 Identities=28% Similarity=0.429 Sum_probs=328.8
Q ss_pred CCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
.+.|-++++|+++. ++..|..++.+..|.+|+|+|.++ ++..++|++++-.|.||||||.+|+.|++-++
T Consensus 216 ~s~~rpvtsfeh~g------fDkqLm~airk~Ey~kptpiq~qa----lptalsgrdvigIAktgSgktaAfi~pm~~hi 285 (731)
T KOG0339|consen 216 SSPPRPVTSFEHFG------FDKQLMTAIRKSEYEKPTPIQCQA----LPTALSGRDVIGIAKTGSGKTAAFIWPMIVHI 285 (731)
T ss_pred CCCCCCcchhhhcC------chHHHHHHHhhhhcccCCcccccc----cccccccccchheeeccCcchhHHHHHHHHHh
Confidence 45677788888885 788999999999999999999998 55556799999999999999999999999888
Q ss_pred hhcc----cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc
Q 010196 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (515)
Q Consensus 95 ~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (515)
...+ ..+|..+|+|||++|+.|++.+++++++..++++.++||+.+..++... |.
T Consensus 286 mdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~---------------------Lk 344 (731)
T KOG0339|consen 286 MDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKE---------------------LK 344 (731)
T ss_pred cchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHh---------------------hh
Confidence 7643 3578899999999999999999999999999999999999999888754 45
Q ss_pred cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhh
Q 010196 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (515)
Q Consensus 171 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
.++.||||||++|++++.- +..++.++++||+|||++|.+++|...+..|.....
T Consensus 345 ~g~EivVaTPgRlid~Vkm-Katn~~rvS~LV~DEadrmfdmGfe~qVrSI~~hir------------------------ 399 (731)
T KOG0339|consen 345 EGAEIVVATPGRLIDMVKM-KATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQHIR------------------------ 399 (731)
T ss_pred cCCeEEEechHHHHHHHHh-hcccceeeeEEEEechhhhhccccHHHHHHHHhhcC------------------------
Confidence 7899999999999999876 668899999999999999999999999999988765
Q ss_pred hccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc
Q 010196 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL 330 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 330 (515)
|..|.++||||+...+..+++..+.+|+.+..+.....-....+...++.+...|...|..-|...
T Consensus 400 --------------pdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~L~~f 465 (731)
T KOG0339|consen 400 --------------PDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRHLVEF 465 (731)
T ss_pred --------------CcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHHhhhh
Confidence 445899999999999999999999999998887655555555566667777778888777766544
Q ss_pred -CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE
Q 010196 331 -GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (515)
Q Consensus 331 -~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~ 409 (515)
..+++|||+..+..++.++..|...+ +.+..+||+|.+.+|.+++..|+.+...|||+||++++|+|+|++..||+
T Consensus 466 ~S~gkvlifVTKk~~~e~i~a~Lklk~---~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn 542 (731)
T KOG0339|consen 466 SSEGKVLIFVTKKADAEEIAANLKLKG---FNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN 542 (731)
T ss_pred ccCCcEEEEEeccCCHHHHHHHhcccc---ceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec
Confidence 56899999999999999999998766 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
||+..+++.|.||+||+||+|.+|.+++++++.|....-.+.+.+.+
T Consensus 543 yD~ardIdththrigrtgRag~kGvayTlvTeKDa~fAG~LVnnLe~ 589 (731)
T KOG0339|consen 543 YDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAEFAGHLVNNLEG 589 (731)
T ss_pred ccccchhHHHHHHhhhcccccccceeeEEechhhHHHhhHHHHHHhh
Confidence 99999999999999999999999999999999998887777776654
No 29
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.7e-55 Score=395.48 Aligned_cols=354 Identities=27% Similarity=0.454 Sum_probs=302.5
Q ss_pred CCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
-+.|.++.+|.++. ++..+++.|++.|+..|+|+|.+.++. .++|+|.|..|-||||||++|.+|++-..
T Consensus 163 d~ipPPIksF~eMK------FP~~~L~~lk~KGI~~PTpIQvQGlPv----vLsGRDmIGIAfTGSGKTlvFvLP~imf~ 232 (610)
T KOG0341|consen 163 DDIPPPIKSFKEMK------FPKPLLRGLKKKGIVHPTPIQVQGLPV----VLSGRDMIGIAFTGSGKTLVFVLPVIMFA 232 (610)
T ss_pred CCCCCchhhhhhcc------CCHHHHHHHHhcCCCCCCceeecCcce----EeecCceeeEEeecCCceEEEeHHHHHHH
Confidence 35678889999998 899999999999999999999999554 46799999999999999999999988665
Q ss_pred hhc-------ccCcccEEEEcccHHHHHHHHHHHHHhcccc------CcEEEEeecCCchHHHHHHHhccCcccccccCC
Q 010196 95 SNR-------AVRCLRALVVLPTRDLALQVKDVFAAIAPAV------GLSVGLAVGQSSIADEISELIKRPKLEAGICYD 161 (515)
Q Consensus 95 ~~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 161 (515)
... ...++-.||+||+|+||.|.++.+..++..+ .++..++.|+.+..++..
T Consensus 233 LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~--------------- 297 (610)
T KOG0341|consen 233 LEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLD--------------- 297 (610)
T ss_pred HHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHH---------------
Confidence 443 1347789999999999999999988876544 367788889988877754
Q ss_pred chhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCcccccc
Q 010196 162 PEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLP 241 (515)
Q Consensus 162 ~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 241 (515)
.++.+.+|+|+||++|.+++.+ +..++.-.+++.+||||+|++++|.+.+..++..+...
T Consensus 298 ------~v~~GvHivVATPGRL~DmL~K-K~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~Q------------- 357 (610)
T KOG0341|consen 298 ------VVRRGVHIVVATPGRLMDMLAK-KIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQ------------- 357 (610)
T ss_pred ------HHhcCeeEEEcCcchHHHHHHH-hhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhh-------------
Confidence 3567889999999999999987 55777788899999999999999999999999887633
Q ss_pred ccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHH
Q 010196 242 SAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL 321 (515)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 321 (515)
.|+++||||++.++..+++.-+..|+.+..+.........++... .+..+.|..
T Consensus 358 -------------------------RQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevE-yVkqEaKiV 411 (610)
T KOG0341|consen 358 -------------------------RQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVE-YVKQEAKIV 411 (610)
T ss_pred -------------------------hheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHH-HHHhhhhhh
Confidence 288999999999999999999999999988765433333333222 233455666
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCC
Q 010196 322 YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (515)
Q Consensus 322 ~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi 401 (515)
.+++-|++. ..++||||..+..++.+.++|--.| +.+..+||+..+++|...++.|+.|+.+||||||+++.|+||
T Consensus 412 ylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKG---VEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDF 487 (610)
T KOG0341|consen 412 YLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKG---VEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDF 487 (610)
T ss_pred hHHHHhccC-CCceEEEeccccChHHHHHHHHHcc---ceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCC
Confidence 666655543 5789999999999999999998766 899999999999999999999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 402 ~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
|++.+|||||+|...+.|+||+||+||.|+.|.+.+|+++..
T Consensus 488 p~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~ 529 (610)
T KOG0341|consen 488 PDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQ 529 (610)
T ss_pred ccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccc
Confidence 999999999999999999999999999999999999998764
No 30
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.8e-54 Score=432.94 Aligned_cols=368 Identities=30% Similarity=0.485 Sum_probs=322.8
Q ss_pred CCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 15 MRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
.+-|.++.+|.++. ++..++..++++||..|+|+|.+||++|+ .|+|+|..|.||||||++|++|++.+.
T Consensus 358 ~~~pkpv~sW~q~g------l~~~il~tlkkl~y~k~~~IQ~qAiP~Im----sGrdvIgvakTgSGKT~af~LPmirhi 427 (997)
T KOG0334|consen 358 KECPKPVTSWTQCG------LSSKILETLKKLGYEKPTPIQAQAIPAIM----SGRDVIGVAKTGSGKTLAFLLPMIRHI 427 (997)
T ss_pred CCCCcccchHhhCC------chHHHHHHHHHhcCCCCcchhhhhcchhc----cCcceEEeeccCCccchhhhcchhhhh
Confidence 56789999999996 99999999999999999999999988775 599999999999999999999999877
Q ss_pred hhcc----cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc
Q 010196 95 SNRA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (515)
Q Consensus 95 ~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (515)
...+ ..+|.+||++||++|+.|+.+++++|+..+++.+++++|+.....+... ++
T Consensus 428 ~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiae---------------------lk 486 (997)
T KOG0334|consen 428 KDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAE---------------------LK 486 (997)
T ss_pred hcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHH---------------------Hh
Confidence 6543 2478999999999999999999999999999999999999988877654 45
Q ss_pred cCCcEEEeCChHHHHHHhcCc--CCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchh
Q 010196 171 SAVDILVATPGRLMDHINATR--GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLK 248 (515)
Q Consensus 171 ~~~~Ivv~Tp~~l~~~l~~~~--~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (515)
.+++|+||||+++++.+-.+. ..++.+..+||+||||+|.+.+|...+..|+..+.
T Consensus 487 Rg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq~~~Ii~nlr---------------------- 544 (997)
T KOG0334|consen 487 RGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQITRILQNLR---------------------- 544 (997)
T ss_pred cCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcccchHHhhcc----------------------
Confidence 678999999999999875533 23566677999999999999999888777777653
Q ss_pred hhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEecc-CCCcHHHHHHHH
Q 010196 249 TIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALL 327 (515)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l 327 (515)
|..|.+++|||++..+..++...++.|+.+..+... .+...+.+...++. ...|+..|.++|
T Consensus 545 ----------------pdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl 607 (997)
T KOG0334|consen 545 ----------------PDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELL 607 (997)
T ss_pred ----------------hhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHH
Confidence 334889999999988888888888899888776544 34444555555555 889999999998
Q ss_pred Hh-cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCE
Q 010196 328 QS-LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNN 406 (515)
Q Consensus 328 ~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~ 406 (515)
.. .+..++||||.....|..+.+.|...+ +.+..+||+.++.+|...++.|+++.+++||+|+++++|+|++++.+
T Consensus 608 ~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag---~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~L 684 (997)
T KOG0334|consen 608 GERYEDGKTIIFVDKQEKADALLRDLQKAG---YNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELIL 684 (997)
T ss_pred HHHhhcCCEEEEEcCchHHHHHHHHHHhcC---cchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceE
Confidence 74 468899999999999999999999766 78888999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 407 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
|||||+|..+..|+||.||+||.|+.|.+++|+.+.+.+..-.|.+.+.
T Consensus 685 vvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p~q~~~a~dl~~al~ 733 (997)
T KOG0334|consen 685 VVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITPDQLKYAGDLCKALE 733 (997)
T ss_pred EEEcccchhHHHHHHHhcccccCCccceeEEEeChHHhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999988888888888773
No 31
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-53 Score=380.01 Aligned_cols=360 Identities=24% Similarity=0.352 Sum_probs=299.6
Q ss_pred cccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc
Q 010196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~ 99 (515)
.+++|+++. |.|++++.++.|+|..|+.+|+.|++-++. ...+|+|.++..|+|||.+|.+.++.++.-. .
T Consensus 88 S~ksFeeL~------LkPellkgly~M~F~kPskIQe~aLPlll~--~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-~ 158 (477)
T KOG0332|consen 88 SAKSFEELR------LKPELLKGLYAMKFQKPSKIQETALPLLLA--EPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-V 158 (477)
T ss_pred ccccHHhhC------CCHHHHhHHHHhccCCcchHHHhhcchhhc--CCchhhhhhhcCCCchhHHHHHHHHHhcCcc-c
Confidence 445677775 999999999999999999999999876654 3469999999999999999999999887553 4
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
..|.++.|+||++||.|+.+.+.+.+++.++.+....-+....+- . . =..+|+|+|
T Consensus 159 ~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG------------------~----~--i~eqIviGT 214 (477)
T KOG0332|consen 159 VVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAKRG------------------N----K--LTEQIVIGT 214 (477)
T ss_pred cCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccccC------------------C----c--chhheeeCC
Confidence 567899999999999999999999999888888777666521100 0 0 013899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcchhHHHHH-HHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
|+.+.+++...+-+.+.+++++|+||||.|++. ||++.--.|+..++
T Consensus 215 PGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP-------------------------------- 262 (477)
T KOG0332|consen 215 PGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLP-------------------------------- 262 (477)
T ss_pred CccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcC--------------------------------
Confidence 999999998766678889999999999999864 46655555555543
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec-cCCCcHHHHHHHHHhcCCCeEEE
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIV 337 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lV 337 (515)
+..|.+++|||....+..++...+.++..+........+.. +.++++.| ....|...|.++.....-+..||
T Consensus 263 ------~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~-IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiI 335 (477)
T KOG0332|consen 263 ------RNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDN-IKQLYVLCACRDDKYQALVNLYGLLTIGQSII 335 (477)
T ss_pred ------CcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccc-hhhheeeccchhhHHHHHHHHHhhhhhhheEE
Confidence 23488999999999999999999998888877666655544 55555555 46678999999887777889999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC---
Q 010196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA--- 414 (515)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~--- 414 (515)
||.+++.+..++..+...| ..|..+||+|.-.+|..++++|++|+.+|||+|++++||||++.|++|||||+|.
T Consensus 336 Fc~tk~ta~~l~~~m~~~G---h~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~ 412 (477)
T KOG0332|consen 336 FCHTKATAMWLYEEMRAEG---HQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYT 412 (477)
T ss_pred EEeehhhHHHHHHHHHhcC---ceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccC
Confidence 9999999999999999877 8999999999999999999999999999999999999999999999999999994
Q ss_pred ---ChhhhHHhhhhcccCCCCccEEEEeechhH-HHHHHHHHHh
Q 010196 415 ---YIKTYIHRAGRTARAGQLGRCFTLLHKDEV-KRFKKLLQKA 454 (515)
Q Consensus 415 ---s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~-~~~~~~~~~~ 454 (515)
++..|+||+||+||+|+.|.++.|++..+. ..+.++.+..
T Consensus 413 ~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 413 GEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred CCCCHHHHHHHhcccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 578999999999999999999999977654 4444554444
No 32
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=4.8e-50 Score=415.00 Aligned_cols=385 Identities=20% Similarity=0.271 Sum_probs=276.0
Q ss_pred CCHHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 35 l~~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
....+...++. |||..|||+|.++|+.++ .|+|+++.+|||+|||++|++|++.. ...+|||+|+++|
T Consensus 444 w~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL----~GrDVLVimPTGSGKSLcYQLPAL~~-------~GiTLVISPLiSL 512 (1195)
T PLN03137 444 WTKKLEVNNKKVFGNHSFRPNQREIINATM----SGYDVFVLMPTGGGKSLTYQLPALIC-------PGITLVISPLVSL 512 (1195)
T ss_pred chHHHHHHHHHHcCCCCCCHHHHHHHHHHH----cCCCEEEEcCCCccHHHHHHHHHHHc-------CCcEEEEeCHHHH
Confidence 55677777765 899999999999988875 49999999999999999999999842 3479999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc---cCCcEEEeCChHHHH---HH
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ---SAVDILVATPGRLMD---HI 187 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~Ivv~Tp~~l~~---~l 187 (515)
+.++...+... ++.+..+.++.+..++...+ +.+. ..++|+|+||++|.. ++
T Consensus 513 mqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~il------------------r~l~s~~g~~~ILyvTPERL~~~d~ll 570 (1195)
T PLN03137 513 IQDQIMNLLQA----NIPAASLSAGMEWAEQLEIL------------------QELSSEYSKYKLLYVTPEKVAKSDSLL 570 (1195)
T ss_pred HHHHHHHHHhC----CCeEEEEECCCCHHHHHHHH------------------HHHHhcCCCCCEEEEChHHhhcchHHH
Confidence 98666666553 78899999988876654322 1111 457999999999852 12
Q ss_pred hcCcCC-CCCcceEEEEcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCC
Q 010196 188 NATRGF-TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (515)
Q Consensus 188 ~~~~~~-~~~~~~~vViDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
.....+ ....+.+|||||||++.+++ |...+..+-..... +
T Consensus 571 ~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~------------------------------------f 614 (1195)
T PLN03137 571 RHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLGILKQK------------------------------------F 614 (1195)
T ss_pred HHHHhhhhccccceeccCcchhhhhcccchHHHHHHHHHHHHh------------------------------------C
Confidence 111111 23458899999999998876 44444332111100 1
Q ss_pred CceeeEEEEEEecCCchhhhh--cccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCC
Q 010196 265 PRLVKMVLSATLTQDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSS 341 (515)
Q Consensus 265 ~~~~~i~~SaT~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s 341 (515)
+..+++++|||++..+...+. +.+.++.++.....+.++ .+.+..........+..++... .+.++||||.+
T Consensus 615 p~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL-----~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~S 689 (1195)
T PLN03137 615 PNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNL-----WYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLS 689 (1195)
T ss_pred CCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccce-----EEEEeccchhHHHHHHHHHHhcccCCCceeEeCc
Confidence 334788999999877665322 234455554443332211 2222222222234555555533 36689999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHH
Q 010196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (515)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Q 421 (515)
++.++.+++.|...+ +.+..|||+|++.+|..+++.|..|+++|||||+++++|||+|+|++||+|++|.+++.|+|
T Consensus 690 Rke~E~LAe~L~~~G---ika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQ 766 (1195)
T PLN03137 690 RMDCEKVAERLQEFG---HKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQ 766 (1195)
T ss_pred hhHHHHHHHHHHHCC---CCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHh
Confidence 999999999999876 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccCCCCccEEEEeechhHHHHHHHHHHhcCCCCCc--cCCChhhHhhhHHHHHHHHHHHHHHHHHh-hccccc
Q 010196 422 RAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPI--HSIPSSLIESLRPVYKSALDKLKETVESE-AHRKHT 496 (515)
Q Consensus 422 r~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 496 (515)
|+|||||+|..|.|++|++..|...++.++.......... ..-.........+.-...+.++..+++.. .|++..
T Consensus 767 riGRAGRDG~~g~cILlys~~D~~~~~~lI~~~~~~~s~~~~~~~r~~~s~~~~e~~~~~L~~m~~yce~~~~CRR~~ 844 (1195)
T PLN03137 767 ECGRAGRDGQRSSCVLYYSYSDYIRVKHMISQGGVEQSPMAMGYNRMASSGRILETNTENLLRMVSYCENEVDCRRFL 844 (1195)
T ss_pred hhcccCCCCCCceEEEEecHHHHHHHHHHHhccccccchhhhhhcccchhHHHHHHHHHHHHHHHHHHhChHhhHHHH
Confidence 9999999999999999999999988888876432211100 00000001111222334556677777775 677765
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.7e-50 Score=421.92 Aligned_cols=352 Identities=20% Similarity=0.247 Sum_probs=265.5
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.++|+++||.+|+++|.+|++.++ .|+|+++.+|||||||++|++|+++.+.+. ++.++|||+||++|+
T Consensus 21 l~~~l~~~L~~~g~~~p~~~Q~~ai~~il----~G~nvvv~apTGSGKTla~~LPiL~~l~~~--~~~~aL~l~PtraLa 94 (742)
T TIGR03817 21 AHPDVVAALEAAGIHRPWQHQARAAELAH----AGRHVVVATGTASGKSLAYQLPVLSALADD--PRATALYLAPTKALA 94 (742)
T ss_pred CCHHHHHHHHHcCCCcCCHHHHHHHHHHH----CCCCEEEECCCCCcHHHHHHHHHHHHHhhC--CCcEEEEEcChHHHH
Confidence 89999999999999999999999988875 499999999999999999999999999763 456899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC--
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-- 192 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-- 192 (515)
.|+.+.++++. ..++++..+.|+.+...+ ..++.+++|+|+||+++...+.....
T Consensus 95 ~q~~~~l~~l~-~~~i~v~~~~Gdt~~~~r----------------------~~i~~~~~IivtTPd~L~~~~L~~~~~~ 151 (742)
T TIGR03817 95 ADQLRAVRELT-LRGVRPATYDGDTPTEER----------------------RWAREHARYVLTNPDMLHRGILPSHARW 151 (742)
T ss_pred HHHHHHHHHhc-cCCeEEEEEeCCCCHHHH----------------------HHHhcCCCEEEEChHHHHHhhccchhHH
Confidence 99999999987 447888888888775433 23445689999999999754332111
Q ss_pred -CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 193 -FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 193 -~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
..++++++||+||||.+.+ .|+..+..+++.+...... .....|+++
T Consensus 152 ~~~l~~l~~vViDEah~~~g-~fg~~~~~il~rL~ri~~~-------------------------------~g~~~q~i~ 199 (742)
T TIGR03817 152 ARFLRRLRYVVIDECHSYRG-VFGSHVALVLRRLRRLCAR-------------------------------YGASPVFVL 199 (742)
T ss_pred HHHHhcCCEEEEeChhhccC-ccHHHHHHHHHHHHHHHHh-------------------------------cCCCCEEEE
Confidence 1267899999999999865 4776666666554321100 001238899
Q ss_pred EEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEecc-----------------CCCcHHHHHHHHHhcCCCe
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-----------------SKLKPLYLVALLQSLGEEK 334 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~k~~~l~~~l~~~~~~~ 334 (515)
+|||+++... .....+..|..+...... +........... ...+...+..++.. +.+
T Consensus 200 ~SATi~n~~~-~~~~l~g~~~~~i~~~~~---~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~ 273 (742)
T TIGR03817 200 ASATTADPAA-AASRLIGAPVVAVTEDGS---PRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GAR 273 (742)
T ss_pred EecCCCCHHH-HHHHHcCCCeEEECCCCC---CcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCC
Confidence 9999976543 444444455443221111 111111111100 01233344445443 679
Q ss_pred EEEEcCChhhHHHHHHHHhhcC-----CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE
Q 010196 335 CIVFTSSVESTHRLCTLLNHFG-----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN 409 (515)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~-----~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~ 409 (515)
+||||+|++.++.++..|.... ..+..+..+||++++++|.++++.|++|++++||||+++++|||+|++++||+
T Consensus 274 ~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~ 353 (742)
T TIGR03817 274 TLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI 353 (742)
T ss_pred EEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE
Confidence 9999999999999999987531 12467889999999999999999999999999999999999999999999999
Q ss_pred ccCCCChhhhHHhhhhcccCCCCccEEEEee--chhHHHHHHHHHH
Q 010196 410 YDKPAYIKTYIHRAGRTARAGQLGRCFTLLH--KDEVKRFKKLLQK 453 (515)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~--~~d~~~~~~~~~~ 453 (515)
+++|.+..+|+||+||+||.|+.|.++++.. +.|...+....+.
T Consensus 354 ~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~~~~~~d~~~~~~~~~~ 399 (742)
T TIGR03817 354 AGFPGTRASLWQQAGRAGRRGQGALVVLVARDDPLDTYLVHHPEAL 399 (742)
T ss_pred eCCCCCHHHHHHhccccCCCCCCcEEEEEeCCChHHHHHHhCHHHH
Confidence 9999999999999999999999999999986 4454445544333
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-50 Score=406.93 Aligned_cols=363 Identities=22% Similarity=0.341 Sum_probs=267.5
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.+||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++. .+..+||++|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~----g~dvlv~apTGsGKTl~y~lp~l~-------~~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLL----GRDCFVVMPTGGGKSLCYQLPALC-------SDGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCCcHhHHHHHHHHH-------cCCcEEEEecHHHHHHHHHHHHHHc
Confidence 47999999999999888764 899999999999999999999884 2337999999999999999988765
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeCChHHHHHHhcCcCC-CCCcceEEE
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGF-TLEHLCYLV 202 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~~~~~vV 202 (515)
++.+..+.++.+..+...- ...+ ...++|+++||+++.........+ ...++++||
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i------------------~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iV 132 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNV------------------LTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIA 132 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEE
Confidence 6778888877665543211 1122 234799999999975422110112 356889999
Q ss_pred EcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCc
Q 010196 203 VDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (515)
Q Consensus 203 iDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (515)
+||||++.+++ |...+..+...... .+..+++++|||++...
T Consensus 133 iDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~l~lTAT~~~~~ 176 (470)
T TIGR00614 133 VDEAHCISQWGHDFRPDYKALGSLKQK------------------------------------FPNVPIMALTATASPSV 176 (470)
T ss_pred EeCCcccCccccccHHHHHHHHHHHHH------------------------------------cCCCceEEEecCCCHHH
Confidence 99999998765 33333333221110 13347899999998765
Q ss_pred hhh--hhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHH-hcCCCeEEEEcCChhhHHHHHHHHhhcCC
Q 010196 281 NKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGE 357 (515)
Q Consensus 281 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~ 357 (515)
... ....+..|..+.....+..+ .+.+..........+..++. ...+..+||||++++.++.++..|...+
T Consensus 177 ~~di~~~l~l~~~~~~~~s~~r~nl-----~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g- 250 (470)
T TIGR00614 177 REDILRQLNLKNPQIFCTSFDRPNL-----YYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLG- 250 (470)
T ss_pred HHHHHHHcCCCCCcEEeCCCCCCCc-----EEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcC-
Confidence 432 22344566655544332221 22222222234555666665 4455677999999999999999998766
Q ss_pred CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEE
Q 010196 358 LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (515)
Q Consensus 358 ~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (515)
+.+..+||+|++.+|..+++.|++|+++|||||+++++|+|+|++++||++++|.|...|+||+||+||.|.+|.|++
T Consensus 251 --~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~ 328 (470)
T TIGR00614 251 --IAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDGLPSECHL 328 (470)
T ss_pred --CCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCCCCceEEE
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhcccccc
Q 010196 438 LLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTI 497 (515)
Q Consensus 438 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (515)
|+++.|...++.++...... ..+.......+.+...++...|++...
T Consensus 329 ~~~~~d~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~crr~~l 375 (470)
T TIGR00614 329 FYAPADINRLRRLLMEEPDG-------------QQRTYKLKLYEMMEYCLNSSTCRRLIL 375 (470)
T ss_pred EechhHHHHHHHHHhcCCch-------------hHHHHHHHHHHHHHHHhccccCHHHHH
Confidence 99999999888887653221 111222334556666666666766553
No 35
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.1e-51 Score=368.57 Aligned_cols=362 Identities=26% Similarity=0.436 Sum_probs=320.1
Q ss_pred ccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc
Q 010196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~ 98 (515)
.-+.+|+++. |.+++++.++..||++|+.+|++|+. +...|.|+++++++|+|||.+|.+++++.+.-.
T Consensus 23 evvdsfddm~------L~e~LLrgiy~yGFekPSaIQqraI~----p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~- 91 (397)
T KOG0327|consen 23 EVVDSFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIL----PCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS- 91 (397)
T ss_pred HHhhhhhhcC------CCHHHHhHHHhhccCCchHHHhcccc----ccccCCceeEeeeccccchhhhHHHHHhhcCcc-
Confidence 3445777775 99999999999999999999999954 445699999999999999999999999887432
Q ss_pred cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEe
Q 010196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (515)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~ 178 (515)
.....+++++||++|+.|+.+....++...+.++..+.|+.+...+...+ ....++|+++
T Consensus 92 ~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i--------------------~~~~~hivvG 151 (397)
T KOG0327|consen 92 VKETQALILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQAL--------------------LKDKPHIVVG 151 (397)
T ss_pred hHHHHHHHhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhh--------------------hccCceeecC
Confidence 34557999999999999999999999999999999999998866443222 2345799999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
||++..+.+... .+....+++.|+||||.|++.+|.+.+..+...++.
T Consensus 152 TpgrV~dml~~~-~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~lp~------------------------------- 199 (397)
T KOG0327|consen 152 TPGRVFDMLNRG-SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQELPS------------------------------- 199 (397)
T ss_pred CchhHHHhhccc-cccccceeEEeecchHhhhccchHHHHHHHHHHcCc-------------------------------
Confidence 999999999874 677788999999999999999999999999998863
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEE
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (515)
..|.+++|||.+.++....+.++.+|..+........ .+.+.++++....++|...|..+.+ .-...+||
T Consensus 200 -------~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if 269 (397)
T KOG0327|consen 200 -------DVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIF 269 (397)
T ss_pred -------chhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHHHHHH--hhhcceEE
Confidence 3488999999999999999999999999988766644 4556778888888889999999888 56789999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhh
Q 010196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (515)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~ 418 (515)
||++..+..+...|..++ ..+...||+|.+.+|..++..|+.|..+|||+|+.+++|+|+..++.||+|++|....+
T Consensus 270 ~nt~r~v~~l~~~L~~~~---~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~ 346 (397)
T KOG0327|consen 270 CNTRRKVDNLTDKLRAHG---FTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKEN 346 (397)
T ss_pred ecchhhHHHHHHHHhhCC---ceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhh
Confidence 999999999999997665 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
|+||+||+||.|.+|.++.++...|...++++.+.++.
T Consensus 347 yihR~gr~gr~grkg~~in~v~~~d~~~lk~ie~~y~~ 384 (397)
T KOG0327|consen 347 YIHRIGRAGRFGRKGVAINFVTEEDVRDLKDIEKFYNT 384 (397)
T ss_pred hhhhcccccccCCCceeeeeehHhhHHHHHhHHHhcCC
Confidence 99999999999999999999999999999999876543
No 36
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2e-50 Score=366.77 Aligned_cols=380 Identities=30% Similarity=0.405 Sum_probs=331.3
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
||+..+.+++.+.||..|+|+|.+.++ .++.+++++..|-||||||.+|++|+++.|......+.++++++||++|
T Consensus 27 gL~~~v~raI~kkg~~~ptpiqRKTip----liLe~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreL 102 (529)
T KOG0337|consen 27 GLDYKVLRAIHKKGFNTPTPIQRKTIP----LILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTREL 102 (529)
T ss_pred CCCHHHHHHHHHhhcCCCCchhccccc----ceeeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHH
Confidence 599999999999999999999999955 4566999999999999999999999999999987778899999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|..+..++++...+++..+++|+.+..++... +.+++|||++||++++.+.-. ..+
T Consensus 103 a~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~---------------------l~~npDii~ATpgr~~h~~ve-m~l 160 (529)
T KOG0337|consen 103 ALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFIL---------------------LNENPDIIIATPGRLLHLGVE-MTL 160 (529)
T ss_pred HHHHHHHHHHhccccchhhhhhcccchHHHHHHH---------------------hccCCCEEEecCceeeeeehh-eec
Confidence 9999999999999999999999999988877654 456789999999999877655 446
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.++.+.+||+||||++.+++|.+.+..++..++.. .|+++||
T Consensus 161 ~l~sveyVVfdEadrlfemgfqeql~e~l~rl~~~--------------------------------------~QTllfS 202 (529)
T KOG0337|consen 161 TLSSVEYVVFDEADRLFEMGFQEQLHEILSRLPES--------------------------------------RQTLLFS 202 (529)
T ss_pred cccceeeeeehhhhHHHhhhhHHHHHHHHHhCCCc--------------------------------------ceEEEEe
Confidence 78899999999999999999999999999887643 2889999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcC-CCeEEEEcCChhhHHHHHHHH
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLG-EEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~-~~~~lVf~~s~~~~~~l~~~L 352 (515)
||++.....+++..+.+|..+.... +..+.+.++..+..+...+|...|..++...- ...++||+.+..+++.+...|
T Consensus 203 atlp~~lv~fakaGl~~p~lVRldv-etkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll 281 (529)
T KOG0337|consen 203 ATLPRDLVDFAKAGLVPPVLVRLDV-ETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLL 281 (529)
T ss_pred ccCchhhHHHHHccCCCCceEEeeh-hhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHH
Confidence 9999999999999999999998543 34666777777888888999999999988653 468999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
...+ +.+..+.|.|++..|..-+..|+.++..+||.|++++||+|+|..+.||+||+|.+...|+||+||+.|+|+.
T Consensus 282 ~~~g---~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrt 358 (529)
T KOG0337|consen 282 RDFG---GEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRT 358 (529)
T ss_pred HhcC---CCccccccccChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhcccc
Confidence 9877 7888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeechhHHHHHHHHHHhcCCC--------------CCccCCChhhHhhhHHHHHHHHH
Q 010196 433 GRCFTLLHKDEVKRFKKLLQKADNDS--------------CPIHSIPSSLIESLRPVYKSALD 481 (515)
Q Consensus 433 g~~~~~~~~~d~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~ 481 (515)
|.+|.++.+.|..++-++-.-+.... .-+...|+.+++...+.++..++
T Consensus 359 g~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~~~t~vigr~P~~~v~~~~~~~q~~~~ 421 (529)
T KOG0337|consen 359 GRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDCDDTTVIGRSPQSLVSLESEGHQSILE 421 (529)
T ss_pred ceEEEEEecccchhhhhhhhhcCCceeeccchhhhccccceeeccCcHHHHHHHHHHHHHHHh
Confidence 99999999999888877755443221 12345566666655555554443
No 37
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=3.6e-49 Score=406.65 Aligned_cols=371 Identities=21% Similarity=0.302 Sum_probs=274.7
Q ss_pred CCCHHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 34 CLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 34 ~l~~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
.+++...+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. ...+||++|+++
T Consensus 8 ~~~~~~~~~l~~~fG~~~~r~~Q~~ai~~il~----g~dvlv~apTGsGKTl~y~lpal~~-------~g~tlVisPl~s 76 (607)
T PRK11057 8 NLESLAKQVLQETFGYQQFRPGQQEIIDAVLS----GRDCLVVMPTGGGKSLCYQIPALVL-------DGLTLVVSPLIS 76 (607)
T ss_pred CchhHHHHHHHHHcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHc-------CCCEEEEecHHH
Confidence 355566666665 7999999999999888764 8999999999999999999999832 236999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeCChHHHHHHhcCc
Q 010196 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATR 191 (515)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~ 191 (515)
|+.|+.+.++.+ ++.+..+.++.+.......+ ..+ ....+++++||+++...... .
T Consensus 77 L~~dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~------------------~~~~~g~~~il~~tPe~l~~~~~~-~ 133 (607)
T PRK11057 77 LMKDQVDQLLAN----GVAAACLNSTQTREQQLEVM------------------AGCRTGQIKLLYIAPERLMMDNFL-E 133 (607)
T ss_pred HHHHHHHHHHHc----CCcEEEEcCCCCHHHHHHHH------------------HHHhCCCCcEEEEChHHhcChHHH-H
Confidence 999999998875 67777777776655442211 112 23468999999998632211 1
Q ss_pred CCCCCcceEEEEcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceee
Q 010196 192 GFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (515)
Q Consensus 192 ~~~~~~~~~vViDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (515)
.+...++++||+||||++.+++ |...+..+..... .++..++
T Consensus 134 ~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~------------------------------------~~p~~~~ 177 (607)
T PRK11057 134 HLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ------------------------------------RFPTLPF 177 (607)
T ss_pred HHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH------------------------------------hCCCCcE
Confidence 1334578999999999987755 2333222211110 0133478
Q ss_pred EEEEEEecCCchhh--hhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHH
Q 010196 270 MVLSATLTQDPNKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (515)
Q Consensus 270 i~~SaT~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (515)
+++|||++...... ....+.+|........+..+ .+.......+...+...+....+.++||||+|+++|+.
T Consensus 178 v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl------~~~v~~~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~ 251 (607)
T PRK11057 178 MALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI------RYTLVEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVED 251 (607)
T ss_pred EEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc------eeeeeeccchHHHHHHHHHhcCCCCEEEEECcHHHHHH
Confidence 99999998765432 22345566555433322211 12222333455667777777778899999999999999
Q ss_pred HHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcc
Q 010196 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (515)
Q Consensus 348 l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (515)
+++.|...+ +.+..+||+|++.+|.++++.|++|+.+|||||+++++|||+|++++||+|++|.|..+|+||+||+|
T Consensus 252 la~~L~~~g---~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaG 328 (607)
T PRK11057 252 TAARLQSRG---ISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG 328 (607)
T ss_pred HHHHHHhCC---CCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhcc
Confidence 999999876 88999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhccccc
Q 010196 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHT 496 (515)
Q Consensus 428 R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (515)
|.|.+|.|++|+++.|...++.++..... . .........+..+..+++...|++..
T Consensus 329 R~G~~~~~ill~~~~d~~~~~~~~~~~~~---------~----~~~~~~~~~l~~~~~~~~~~~Crr~~ 384 (607)
T PRK11057 329 RDGLPAEAMLFYDPADMAWLRRCLEEKPA---------G----QQQDIERHKLNAMGAFAEAQTCRRLV 384 (607)
T ss_pred CCCCCceEEEEeCHHHHHHHHHHHhcCCc---------H----HHHHHHHHHHHHHHHHHhcccCHHHH
Confidence 99999999999999998888877654211 0 01111223455667777777777754
No 38
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=6.8e-50 Score=379.76 Aligned_cols=372 Identities=29% Similarity=0.405 Sum_probs=307.9
Q ss_pred CccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc
Q 010196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~ 97 (515)
|.++.+|.++.-++. .++.+++.+...+|..|+|+|.+|++.+ +.+++++.+||||+|||++|.+|++.+|...
T Consensus 128 ~~~l~~f~~lt~~~~--~~~~ll~nl~~~~F~~Pt~iq~~aipvf----l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~ 201 (593)
T KOG0344|consen 128 PPPLLSFSDLTYDYS--MNKRLLENLQELGFDEPTPIQKQAIPVF----LEKRDVLACAPTGSGKTLAFNLPILQHLKDL 201 (593)
T ss_pred CCccccccccchhhh--hcHHHHHhHhhCCCCCCCcccchhhhhh----hcccceEEeccCCCcchhhhhhHHHHHHHHh
Confidence 667777777664443 8999999999999999999999997765 4599999999999999999999999999886
Q ss_pred c----cCcccEEEEcccHHHHHHHHHHHHHhc--cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc
Q 010196 98 A----VRCLRALVVLPTRDLALQVKDVFAAIA--PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (515)
Q Consensus 98 ~----~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (515)
. ..+.+++|+.||++|+.|++.++.++. +..+.++.............. .....
T Consensus 202 ~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a--------------------~~~~~ 261 (593)
T KOG0344|consen 202 SQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPA--------------------FLSDE 261 (593)
T ss_pred hcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccc--------------------hhHHH
Confidence 5 567899999999999999999999998 544444433333221111100 11223
Q ss_pred CCcEEEeCChHHHHHHhcCc-CCCCCcceEEEEcchhHHHHH-HHHhHHHHHHhhcccCcccccCCccccccccccchhh
Q 010196 172 AVDILVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKT 249 (515)
Q Consensus 172 ~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~vViDEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (515)
.++|+|+||-++..++.... .+.++.+.++|+||+|.+.+. .|...+..|+..+.++
T Consensus 262 k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~--------------------- 320 (593)
T KOG0344|consen 262 KYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSP--------------------- 320 (593)
T ss_pred HHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCc---------------------
Confidence 46999999999998887643 257889999999999999998 8888888888877642
Q ss_pred hhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeE-EeccCCCcHHHHHHHHH
Q 010196 250 IRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYK-LICESKLKPLYLVALLQ 328 (515)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~~~l~~~l~ 328 (515)
.+.+-+||||.+..+.+++.....++..+.++...... ..+.+-. ...+...|...+..++.
T Consensus 321 ----------------~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~-~~V~QelvF~gse~~K~lA~rq~v~ 383 (593)
T KOG0344|consen 321 ----------------DIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSAN-ETVDQELVFCGSEKGKLLALRQLVA 383 (593)
T ss_pred ----------------chhhhhhhccccHHHHHHHHHhhccceeEEEecchhHh-hhhhhhheeeecchhHHHHHHHHHh
Confidence 23456899999999999999999998888887655443 3344443 44456778889999999
Q ss_pred hcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEE
Q 010196 329 SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (515)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI 408 (515)
..-..+++||+.+.+.|..|+..|..+ .++.+.++||..++.+|++.+++|+.|++++|+||++++||+|+.++++||
T Consensus 384 ~g~~PP~lIfVQs~eRak~L~~~L~~~--~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VI 461 (593)
T KOG0344|consen 384 SGFKPPVLIFVQSKERAKQLFEELEIY--DNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVI 461 (593)
T ss_pred ccCCCCeEEEEecHHHHHHHHHHhhhc--cCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEE
Confidence 888899999999999999999999632 358899999999999999999999999999999999999999999999999
Q ss_pred EccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 409 NYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 409 ~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
+||+|.+..+|+||+||+||+|+.|.+++|++..|...++-+.+-..
T Consensus 462 nyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 462 NYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred ecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 99999999999999999999999999999999999888877766543
No 39
>KOG4284 consensus DEAD box protein [Transcription]
Probab=100.00 E-value=1e-49 Score=379.36 Aligned_cols=347 Identities=26% Similarity=0.418 Sum_probs=301.0
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
|..+++..|++.+|..|+++|..||+.+ ..+-|+|++|..|+|||++|.+.+++.+... ...+..+||+|||+++
T Consensus 32 l~r~vl~glrrn~f~~ptkiQaaAIP~~----~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-~~~~q~~Iv~PTREia 106 (980)
T KOG4284|consen 32 LWREVLLGLRRNAFALPTKIQAAAIPAI----FSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-SSHIQKVIVTPTREIA 106 (980)
T ss_pred HHHHHHHHHHhhcccCCCchhhhhhhhh----hcccceEEEecCCCCceEEEEeeeehhcCcc-cCcceeEEEecchhhh
Confidence 8889999999999999999999997665 4588999999999999999999999887664 4567899999999999
Q ss_pred HHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
.|+.+.+..+++.+ |.++.++.||++.......+ +.++|+|+|||++..+... ..+
T Consensus 107 VQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl----------------------k~~rIvIGtPGRi~qL~el-~~~ 163 (980)
T KOG4284|consen 107 VQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL----------------------KQTRIVIGTPGRIAQLVEL-GAM 163 (980)
T ss_pred hHHHHHHHHhcccccCcceEEEecCchhhhhhhhh----------------------hhceEEecCchHHHHHHHh-cCC
Confidence 99999999999754 79999999999876654433 3468999999999999887 678
Q ss_pred CCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
++++++++|+||||.+++ ..|++.+..|+..++... |++.+
T Consensus 164 n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~r--------------------------------------Qv~a~ 205 (980)
T KOG4284|consen 164 NMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIR--------------------------------------QVAAF 205 (980)
T ss_pred CccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhh--------------------------------------eeeEE
Confidence 999999999999999998 788899999988876432 88999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCC-------CcHHHHHHHHHhcCCCeEEEEcCChhhH
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-------LKPLYLVALLQSLGEEKCIVFTSSVEST 345 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (515)
|||.+.........++.+|..+........+...-+.++..++.. .|+..|-.++.+.+-..+||||+....|
T Consensus 206 SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra 285 (980)
T KOG4284|consen 206 SATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRA 285 (980)
T ss_pred eccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhh
Confidence 999999999999999999999988877766655433333444432 2667777888888888999999999999
Q ss_pred HHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhh
Q 010196 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR 425 (515)
Q Consensus 346 ~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR 425 (515)
+-++..|...| +.+..+.|.|++.+|..+++.++.-.++|||+||..+||||-+++++|||.|.|.+..+|.||+||
T Consensus 286 ~~~a~~L~ssG---~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGR 362 (980)
T KOG4284|consen 286 EPIATHLKSSG---LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGR 362 (980)
T ss_pred hHHHHHhhccC---CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhh
Confidence 99999999766 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCccEEEEeechhH-HHHHHH
Q 010196 426 TARAGQLGRCFTLLHKDEV-KRFKKL 450 (515)
Q Consensus 426 ~gR~g~~g~~~~~~~~~d~-~~~~~~ 450 (515)
|||+|..|.+++|+..... ..|..+
T Consensus 363 AgRFG~~G~aVT~~~~~~e~~~f~~m 388 (980)
T KOG4284|consen 363 AGRFGAHGAAVTLLEDERELKGFTAM 388 (980)
T ss_pred cccccccceeEEEeccchhhhhhHHH
Confidence 9999999999999865543 444444
No 40
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2e-47 Score=395.39 Aligned_cols=367 Identities=20% Similarity=0.305 Sum_probs=273.1
Q ss_pred HHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH
Q 010196 41 VALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (515)
Q Consensus 41 ~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (515)
+.|++ |||.+|+|+|.++++.++. |+|+++++|||+|||++|++|++. ....++|++|+++|+.|+.+
T Consensus 3 ~~l~~~fg~~~fr~~Q~~~i~~il~----g~dvlv~~PTG~GKTl~y~lpal~-------~~g~~lVisPl~sL~~dq~~ 71 (591)
T TIGR01389 3 QVLKRTFGYDDFRPGQEEIISHVLD----GRDVLVVMPTGGGKSLCYQVPALL-------LKGLTVVISPLISLMKDQVD 71 (591)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHc----CCCEEEEcCCCccHhHHHHHHHHH-------cCCcEEEEcCCHHHHHHHHH
Confidence 34544 8999999999999888764 899999999999999999999883 12368999999999999999
Q ss_pred HHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcce
Q 010196 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (515)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 199 (515)
.++.+ ++.+..+.++.+..+....+. .......+|+++||+++...... ..+...+++
T Consensus 72 ~l~~~----gi~~~~~~s~~~~~~~~~~~~-----------------~l~~~~~~il~~tpe~l~~~~~~-~~l~~~~l~ 129 (591)
T TIGR01389 72 QLRAA----GVAAAYLNSTLSAKEQQDIEK-----------------ALVNGELKLLYVAPERLEQDYFL-NMLQRIPIA 129 (591)
T ss_pred HHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhCCCCCEEEEChhHhcChHHH-HHHhcCCCC
Confidence 98875 678888888877655422110 11234579999999998643222 123456899
Q ss_pred EEEEcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEec
Q 010196 200 YLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (515)
Q Consensus 200 ~vViDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 277 (515)
+||+||||++.+++ |...+..+...... .+..+++++|||.+
T Consensus 130 ~iViDEaH~i~~~g~~frp~y~~l~~l~~~------------------------------------~~~~~vi~lTAT~~ 173 (591)
T TIGR01389 130 LVAVDEAHCVSQWGHDFRPEYQRLGSLAER------------------------------------FPQVPRIALTATAD 173 (591)
T ss_pred EEEEeCCcccccccCccHHHHHHHHHHHHh------------------------------------CCCCCEEEEEeCCC
Confidence 99999999987654 33333333322111 12335799999998
Q ss_pred CCchhhhh--cccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhc
Q 010196 278 QDPNKLAQ--LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHF 355 (515)
Q Consensus 278 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~ 355 (515)
........ ..+.++..+.....+. ...+.......+...+...+....+.++||||++++.++.+++.|...
T Consensus 174 ~~~~~~i~~~l~~~~~~~~~~~~~r~------nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~ 247 (591)
T TIGR01389 174 AETRQDIRELLRLADANEFITSFDRP------NLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQ 247 (591)
T ss_pred HHHHHHHHHHcCCCCCCeEecCCCCC------CcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhC
Confidence 76654332 2334444443322221 122222334556677888887766789999999999999999999876
Q ss_pred CCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE
Q 010196 356 GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (515)
Q Consensus 356 ~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 435 (515)
+ +.+..+||+|+..+|..+++.|.+|+++|||||+++++|||+|++++||+|++|.|...|+|++||+||.|..|.|
T Consensus 248 g---~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~ 324 (591)
T TIGR01389 248 G---ISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDGLPAEA 324 (591)
T ss_pred C---CCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCCCCceE
Confidence 5 8899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhcccccc
Q 010196 436 FTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHTI 497 (515)
Q Consensus 436 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (515)
++++++.|...++.+++.... ... ........++++...++...|++...
T Consensus 325 il~~~~~d~~~~~~~i~~~~~---------~~~---~~~~~~~~l~~~~~~~~~~~c~r~~~ 374 (591)
T TIGR01389 325 ILLYSPADIALLKRRIEQSEA---------DDD---YKQIEREKLRAMIAYCETQTCRRAYI 374 (591)
T ss_pred EEecCHHHHHHHHHHHhccCC---------cHH---HHHHHHHHHHHHHHHHcccccHhHHH
Confidence 999999999888877654221 111 11122334455667777777776653
No 41
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-45 Score=362.51 Aligned_cols=369 Identities=21% Similarity=0.308 Sum_probs=282.5
Q ss_pred HHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 39 l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
+...|++ +||..+++.|.++|..++. ++|+++..|||+|||++|.+|++-. ...+|||+|..+|..++
T Consensus 5 ~~~~L~~~fGy~~FR~gQ~evI~~~l~----g~d~lvvmPTGgGKSlCyQiPAll~-------~G~TLVVSPLiSLM~DQ 73 (590)
T COG0514 5 AQQVLKQVFGYASFRPGQQEIIDALLS----GKDTLVVMPTGGGKSLCYQIPALLL-------EGLTLVVSPLISLMKDQ 73 (590)
T ss_pred HHHHHHHHhCccccCCCHHHHHHHHHc----CCcEEEEccCCCCcchHhhhHHHhc-------CCCEEEECchHHHHHHH
Confidence 3455665 7999999999999887754 8999999999999999999999832 23699999999999999
Q ss_pred HHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcCcCCCCC
Q 010196 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLE 196 (515)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~ 196 (515)
.+.++.. |+.+..+.+..+..+.. .++..+.. ..++++.+|++|..--.. ..+.-.
T Consensus 74 V~~l~~~----Gi~A~~lnS~l~~~e~~------------------~v~~~l~~g~~klLyisPErl~~~~f~-~~L~~~ 130 (590)
T COG0514 74 VDQLEAA----GIRAAYLNSTLSREERQ------------------QVLNQLKSGQLKLLYISPERLMSPRFL-ELLKRL 130 (590)
T ss_pred HHHHHHc----CceeehhhcccCHHHHH------------------HHHHHHhcCceeEEEECchhhcChHHH-HHHHhC
Confidence 9998887 78888888887665552 22333333 479999999998643221 112345
Q ss_pred cceEEEEcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 197 HLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 197 ~~~~vViDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
.+.++|||||||+..+| |...+..+-..... ++..+++.+||
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~------------------------------------~~~~p~~AlTA 174 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAG------------------------------------LPNPPVLALTA 174 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhh------------------------------------CCCCCEEEEeC
Confidence 68899999999998886 56665555544321 23457899999
Q ss_pred EecCCchhh--hhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 010196 275 TLTQDPNKL--AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 275 T~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (515)
|.+..+..- ..+.+..+..+..+..+.++...+.... ....+...+.. +.....+..||||.|++.++.+++.|
T Consensus 175 TA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~---~~~~q~~fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L 250 (590)
T COG0514 175 TATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKG---EPSDQLAFLAT-VLPQLSKSGIIYCLTRKKVEELAEWL 250 (590)
T ss_pred CCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcc---cHHHHHHHHHh-hccccCCCeEEEEeeHHhHHHHHHHH
Confidence 998776653 3445667767777666655433322211 12222222222 12445677999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
...+ +.+..||++|+.++|+.+.++|..++.+|+|||.++++|||.|++.+||||++|.|.++|+|-+|||||+|.+
T Consensus 251 ~~~g---~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~~ 327 (590)
T COG0514 251 RKNG---ISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGLP 327 (590)
T ss_pred HHCC---CceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCCc
Confidence 9875 8999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhccccc
Q 010196 433 GRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHT 496 (515)
Q Consensus 433 g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (515)
..|++++++.|....+.+++.... .+.........++.+...++...|++..
T Consensus 328 a~aill~~~~D~~~~~~~i~~~~~------------~~~~~~~~~~kl~~~~~~~e~~~crr~~ 379 (590)
T COG0514 328 AEAILLYSPEDIRWQRYLIEQSKP------------DEEQKQIELAKLRQMIAYCETQTCRRLV 379 (590)
T ss_pred ceEEEeeccccHHHHHHHHHhhcc------------hHHHHHHHHHHHHHHHHhcccccchHHH
Confidence 999999999999888888776432 1233444455566677777777676654
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.9e-45 Score=390.47 Aligned_cols=349 Identities=20% Similarity=0.256 Sum_probs=248.6
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc-----cCcccEEEEcc
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLP 109 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~lil~P 109 (515)
+++.+.+.+.+ +|..|+|+|.+||+.+. .|+|++++||||||||++|++|+++.+.... ..+.++||++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il----~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsP 92 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIH----EGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSP 92 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHH----cCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcC
Confidence 88999999887 78899999999998874 4899999999999999999999999886532 23567999999
Q ss_pred cHHHHHHHHHHHHH-------hc----ccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEE
Q 010196 110 TRDLALQVKDVFAA-------IA----PAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (515)
Q Consensus 110 t~~L~~q~~~~~~~-------~~----~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv 177 (515)
+++|+.|+++.+.. ++ ... ++++...+|+.+..++.. .+..+++|+|
T Consensus 93 traLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~---------------------~l~~~p~IlV 151 (876)
T PRK13767 93 LRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQK---------------------MLKKPPHILI 151 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHH---------------------HHhCCCCEEE
Confidence 99999999886653 22 222 678899999988665533 2345689999
Q ss_pred eCChHHHHHHhcCcC-CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccc
Q 010196 178 ATPGRLMDHINATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVE 256 (515)
Q Consensus 178 ~Tp~~l~~~l~~~~~-~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (515)
+||++|..++..... ..+.++++||+||||.+.+..++..+...+..+.....
T Consensus 152 tTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~-------------------------- 205 (876)
T PRK13767 152 TTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAG-------------------------- 205 (876)
T ss_pred ecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcC--------------------------
Confidence 999999877755321 14678999999999999877776666666554432110
Q ss_pred cCCCCCCCCceeeEEEEEEecCCchhhhhccc-------CCCeeEeeCCccccCCcccceeE-----EeccCCCcHHHHH
Q 010196 257 RGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-------HHPLFLTTGETRYKLPERLESYK-----LICESKLKPLYLV 324 (515)
Q Consensus 257 ~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~k~~~l~ 324 (515)
+..+.+++|||+.+ ......+.. ..+..+......... .+.... ...........+.
T Consensus 206 --------~~~q~IglSATl~~-~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~--~i~v~~p~~~l~~~~~~~~~~~l~ 274 (876)
T PRK13767 206 --------GEFVRIGLSATIEP-LEEVAKFLVGYEDDGEPRDCEIVDARFVKPF--DIKVISPVDDLIHTPAEEISEALY 274 (876)
T ss_pred --------CCCeEEEEecccCC-HHHHHHHhcCccccCCCCceEEEccCCCccc--eEEEeccCccccccccchhHHHHH
Confidence 22378999999864 223222211 111111111000000 000000 0011111112222
Q ss_pred HHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCC---CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccC
Q 010196 325 ALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (515)
Q Consensus 325 ~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~---~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~Gi 399 (515)
..+.. ....++||||+|+..|+.++..|..... .+..+..+||++++++|..+++.|++|+.++||||+++++||
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GI 354 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLELGI 354 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcC
Confidence 33222 1357899999999999999999976422 235789999999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhhhHHhhhhcccCC-CCccEEEEe-echhHHH
Q 010196 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTLL-HKDEVKR 446 (515)
Q Consensus 400 Di~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~~-~~~d~~~ 446 (515)
|+|++++||+++.|.+..+|+||+||+||.+ ..+.++++. +..|.-.
T Consensus 355 Dip~Vd~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~e 403 (876)
T PRK13767 355 DIGYIDLVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLVE 403 (876)
T ss_pred CCCCCcEEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHHH
Confidence 9999999999999999999999999999874 334444444 3444333
No 43
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=4.9e-45 Score=385.71 Aligned_cols=341 Identities=23% Similarity=0.311 Sum_probs=253.8
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 29 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
|+++ +|++.+.+++.+.||.+|+|+|.+|++..+ ..|+|++++||||||||++|.+|+++.+.. +.+++|++
T Consensus 3 ~~~l-~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~---~~g~nvlv~APTGSGKTlia~lail~~l~~----~~kal~i~ 74 (737)
T PRK02362 3 IAEL-PLPEGVIEFYEAEGIEELYPPQAEAVEAGL---LDGKNLLAAIPTASGKTLIAELAMLKAIAR----GGKALYIV 74 (737)
T ss_pred hhhc-CCCHHHHHHHHhCCCCcCCHHHHHHHHHHH---hCCCcEEEECCCcchHHHHHHHHHHHHHhc----CCcEEEEe
Confidence 3344 399999999999999999999999987633 358999999999999999999999998864 34899999
Q ss_pred ccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHh
Q 010196 109 PTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (515)
Q Consensus 109 Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 188 (515)
|+++|+.|+++.++.+.. .++++..++|+...... ....++|+|+||+++..++.
T Consensus 75 P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~------------------------~l~~~~IiV~Tpek~~~llr 129 (737)
T PRK02362 75 PLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE------------------------WLGDNDIIVATSEKVDSLLR 129 (737)
T ss_pred ChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc------------------------ccCCCCEEEECHHHHHHHHh
Confidence 999999999999998754 48899999998653321 11346999999999988887
Q ss_pred cCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCcee
Q 010196 189 ATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (515)
Q Consensus 189 ~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
+. ...+.++++||+||+|.+.+.+++..++.++..+.... +..|
T Consensus 130 ~~-~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~-----------------------------------~~~q 173 (737)
T PRK02362 130 NG-APWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLN-----------------------------------PDLQ 173 (737)
T ss_pred cC-hhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHhcC-----------------------------------CCCc
Confidence 53 33477899999999999988888888888776654211 2348
Q ss_pred eEEEEEEecCCchhhhhcccC-------CCeeEeeC---CccccCCcccceeEEecc-CCCcHHHHHHHHHhcCCCeEEE
Q 010196 269 KMVLSATLTQDPNKLAQLDLH-------HPLFLTTG---ETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIV 337 (515)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~-------~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lV 337 (515)
++++|||+++ ...+..+... .|+.+... ........ ........ .......+...+. .++++||
T Consensus 174 ii~lSATl~n-~~~la~wl~~~~~~~~~rpv~l~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~LV 248 (737)
T PRK02362 174 VVALSATIGN-ADELADWLDAELVDSEWRPIDLREGVFYGGAIHFDD--SQREVEVPSKDDTLNLVLDTLE--EGGQCLV 248 (737)
T ss_pred EEEEcccCCC-HHHHHHHhCCCcccCCCCCCCCeeeEecCCeecccc--ccccCCCccchHHHHHHHHHHH--cCCCeEE
Confidence 8999999964 3333322111 11111100 00000000 00001000 0112222333332 4689999
Q ss_pred EcCChhhHHHHHHHHhhcCC---------------------------------CceeEEEccCccCHHHHHHHHHHHhcC
Q 010196 338 FTSSVESTHRLCTLLNHFGE---------------------------------LRIKIKEYSGLQRQSVRSKTLKAFREG 384 (515)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~---------------------------------~~~~v~~~~~~~~~~~r~~~l~~f~~g 384 (515)
||+|++.|+.++..|..... ....+..+|++|++.+|..+++.|++|
T Consensus 249 F~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G 328 (737)
T PRK02362 249 FVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDR 328 (737)
T ss_pred EEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcC
Confidence 99999999999888864321 013688999999999999999999999
Q ss_pred CceEEEecCCccccCCCCCCCEEEE----cc-----CCCChhhhHHhhhhcccCCCC--ccEEEEeechh
Q 010196 385 KIQVLVSSDAMTRGMDVEGVNNVVN----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE 443 (515)
Q Consensus 385 ~~~vLv~T~~~~~GiDi~~v~~VI~----~~-----~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d 443 (515)
.++|||||+++++|+|+|..++||+ || .|.+..+|.||+|||||.|.+ |.+++++...+
T Consensus 329 ~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~ 398 (737)
T PRK02362 329 LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYD 398 (737)
T ss_pred CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCch
Confidence 9999999999999999999999997 65 578899999999999999876 89999987653
No 44
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=5.7e-44 Score=362.94 Aligned_cols=342 Identities=21% Similarity=0.315 Sum_probs=266.9
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc----cCcccEEEEcc
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA----VRCLRALVVLP 109 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~----~~~~~~lil~P 109 (515)
-|+|.+.+.++.. |.+|||.|.+||+.+. .|+|+++.||||||||+++.+|++..+.+.. ..+..+||++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~----~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsP 81 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIH----SGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISP 81 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHh----CCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCc
Confidence 4899999999998 9999999999999885 4999999999999999999999999998862 34578999999
Q ss_pred cHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhc
Q 010196 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (515)
Q Consensus 110 t~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 189 (515)
.++|..++...+..++..+|+++...+|+++..+... .++++|||+|+||+.|.-++..
T Consensus 82 LkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r---------------------~~~~PPdILiTTPEsL~lll~~ 140 (814)
T COG1201 82 LKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQK---------------------MLKNPPHILITTPESLAILLNS 140 (814)
T ss_pred HHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhh---------------------ccCCCCcEEEeChhHHHHHhcC
Confidence 9999999999999999999999999999998776643 3457789999999999887765
Q ss_pred CcC-CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCcee
Q 010196 190 TRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLV 268 (515)
Q Consensus 190 ~~~-~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (515)
.+. -.+.++++||+||+|.+.+...+..+..-+..+.... +..|
T Consensus 141 ~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~-----------------------------------~~~q 185 (814)
T COG1201 141 PKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELA-----------------------------------GDFQ 185 (814)
T ss_pred HHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhC-----------------------------------cccE
Confidence 321 1578999999999999988887777666665554322 1348
Q ss_pred eEEEEEEecCCchhhhhcccCC--C-eeEeeCCccccCCccccee----EEeccCCCcHHHHHHHHHhcCCCeEEEEcCC
Q 010196 269 KMVLSATLTQDPNKLAQLDLHH--P-LFLTTGETRYKLPERLESY----KLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (515)
Q Consensus 269 ~i~~SaT~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s 341 (515)
.+++|||.. +....+++.... + .++........-...+... ............+.+++++ ...+|||+||
T Consensus 186 RIGLSATV~-~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~--~~ttLIF~NT 262 (814)
T COG1201 186 RIGLSATVG-PPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKK--HRTTLIFTNT 262 (814)
T ss_pred EEeehhccC-CHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhh--cCcEEEEEeC
Confidence 999999996 444444433222 2 3333222111000000000 0000111223344445444 3489999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHH
Q 010196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (515)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Q 421 (515)
+..++.++..|.+.+. ..+..+||+++.+.|..+.++|++|+.+.+|||+.++-|||+.+++.||+++.|.++..++|
T Consensus 263 R~~aE~l~~~L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQ 340 (814)
T COG1201 263 RSGAERLAFRLKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQ 340 (814)
T ss_pred hHHHHHHHHHHHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhH
Confidence 9999999999988653 68899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccC-CCCccEEEEeec
Q 010196 422 RAGRTARA-GQLGRCFTLLHK 441 (515)
Q Consensus 422 r~GR~gR~-g~~g~~~~~~~~ 441 (515)
|+||+|+. |...+++++...
T Consensus 341 RiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 341 RIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred hccccccccCCcccEEEEecC
Confidence 99999965 444677777655
No 45
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=5.1e-43 Score=368.77 Aligned_cols=328 Identities=19% Similarity=0.220 Sum_probs=244.6
Q ss_pred CHHHHHHH-HhCCCCCcchhhHHHHHHHhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 36 DPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 36 ~~~l~~~l-~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
+..+.+.+ ..++| +|||.|.+|++.+...+.++ .|.+++||||+|||.+|+.|++..+..+ .+++|++||++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g----~qvlvLvPT~~ 511 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDG----KQVAVLVPTTL 511 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhC----CeEEEEeCcHH
Confidence 34444444 45788 59999999999988765443 6899999999999999999999887653 48999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcCc
Q 010196 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATR 191 (515)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~ 191 (515)
||.|+++.+++++...++++..++|..+..+.... ...+.. .++|+|+||..+ . +
T Consensus 512 LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~------------------~~~l~~g~~dIVIGTp~ll----~--~ 567 (926)
T TIGR00580 512 LAQQHFETFKERFANFPVTIELLSRFRSAKEQNEI------------------LKELASGKIDILIGTHKLL----Q--K 567 (926)
T ss_pred HHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHH------------------HHHHHcCCceEEEchHHHh----h--C
Confidence 99999999999988888999999888765443221 123333 489999999432 2 3
Q ss_pred CCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 192 ~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
.+.+.++++||+||+|++... ....+.... +..++++
T Consensus 568 ~v~f~~L~llVIDEahrfgv~-----~~~~L~~~~--------------------------------------~~~~vL~ 604 (926)
T TIGR00580 568 DVKFKDLGLLIIDEEQRFGVK-----QKEKLKELR--------------------------------------TSVDVLT 604 (926)
T ss_pred CCCcccCCEEEeecccccchh-----HHHHHHhcC--------------------------------------CCCCEEE
Confidence 356789999999999996321 112222111 2237899
Q ss_pred EEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHH
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~ 351 (515)
+|||+.+...........++..+...+.. . ..+..+............+...+ ..+++++|||++++.++.+++.
T Consensus 605 ~SATpiprtl~~~l~g~~d~s~I~~~p~~-R--~~V~t~v~~~~~~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~ 679 (926)
T TIGR00580 605 LSATPIPRTLHMSMSGIRDLSIIATPPED-R--LPVRTFVMEYDPELVREAIRREL--LRGGQVFYVHNRIESIEKLATQ 679 (926)
T ss_pred EecCCCHHHHHHHHhcCCCcEEEecCCCC-c--cceEEEEEecCHHHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHH
Confidence 99998766555555555666655443221 0 11223222111100011122222 2468999999999999999999
Q ss_pred HhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-ChhhhHHhhhhcccCC
Q 010196 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARAG 430 (515)
Q Consensus 352 L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~-s~~~~~Qr~GR~gR~g 430 (515)
|+... .+.++..+||+|++.+|.+++++|++|+.+|||||+++++|+|+|++++||+++.|. ...+|+||+||+||.|
T Consensus 680 L~~~~-p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g 758 (926)
T TIGR00580 680 LRELV-PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSK 758 (926)
T ss_pred HHHhC-CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCC
Confidence 98753 247899999999999999999999999999999999999999999999999999875 5678999999999999
Q ss_pred CCccEEEEeec
Q 010196 431 QLGRCFTLLHK 441 (515)
Q Consensus 431 ~~g~~~~~~~~ 441 (515)
+.|.|++++.+
T Consensus 759 ~~g~aill~~~ 769 (926)
T TIGR00580 759 KKAYAYLLYPH 769 (926)
T ss_pred CCeEEEEEECC
Confidence 99999999854
No 46
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=2.4e-43 Score=371.99 Aligned_cols=334 Identities=22% Similarity=0.269 Sum_probs=247.6
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+.++++||.+|+|+|.+|++..+ ..|+|++++||||||||++|.+|++..+... +.++||++|+++|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~---~~g~nvlv~apTGsGKT~~~~l~il~~l~~~---~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKERGIEELYPPQAEALKSGV---LEGKNLVLAIPTASGKTLVAEIVMVNKLLRE---GGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHH---hCCCcEEEECCCCcHHHHHHHHHHHHHHHhc---CCeEEEEeChHHHH
Confidence 99999999999999999999999987633 4589999999999999999999999887652 35899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++.+. ..++++..++|+.+.... ....++|+|+||+++..++.. ....
T Consensus 82 ~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~------------------------~~~~~~IiV~Tpe~~~~ll~~-~~~~ 135 (720)
T PRK00254 82 EEKYREFKDWE-KLGLRVAMTTGDYDSTDE------------------------WLGKYDIIIATAEKFDSLLRH-GSSW 135 (720)
T ss_pred HHHHHHHHHHh-hcCCEEEEEeCCCCCchh------------------------hhccCCEEEEcHHHHHHHHhC-Cchh
Confidence 99999998864 458999999998764321 123569999999999888765 3345
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
++++++||+||+|.+.+.+++..++.++..+.. ..|++++||
T Consensus 136 l~~l~lvViDE~H~l~~~~rg~~le~il~~l~~--------------------------------------~~qiI~lSA 177 (720)
T PRK00254 136 IKDVKLVVADEIHLIGSYDRGATLEMILTHMLG--------------------------------------RAQILGLSA 177 (720)
T ss_pred hhcCCEEEEcCcCccCCccchHHHHHHHHhcCc--------------------------------------CCcEEEEEc
Confidence 788999999999999888888888888766431 137899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCc-ccceeEEeccCC--Cc-----HHHHHHHHHhcCCCeEEEEcCChhhHH
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPE-RLESYKLICESK--LK-----PLYLVALLQSLGEEKCIVFTSSVESTH 346 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~k-----~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (515)
|+++ ...+..+..... . ........+.. ...+........ .+ ...+.+.+. .++++||||+|++.|+
T Consensus 178 Tl~n-~~~la~wl~~~~-~-~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~ 252 (720)
T PRK00254 178 TVGN-AEELAEWLNAEL-V-VSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAE 252 (720)
T ss_pred cCCC-HHHHHHHhCCcc-c-cCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHH
Confidence 9964 344444322111 1 11110000000 000111111111 11 122333333 3679999999999998
Q ss_pred HHHHHHhhcC------------------------------CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcc
Q 010196 347 RLCTLLNHFG------------------------------ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (515)
Q Consensus 347 ~l~~~L~~~~------------------------------~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~ 396 (515)
.++..|.... ....++..+|++|++.+|..+++.|++|.++|||||++++
T Consensus 253 ~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa 332 (720)
T PRK00254 253 KEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLS 332 (720)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHh
Confidence 8876663210 0123589999999999999999999999999999999999
Q ss_pred ccCCCCCCCEEEE-------ccCCC-ChhhhHHhhhhcccCC--CCccEEEEeechh
Q 010196 397 RGMDVEGVNNVVN-------YDKPA-YIKTYIHRAGRTARAG--QLGRCFTLLHKDE 443 (515)
Q Consensus 397 ~GiDi~~v~~VI~-------~~~p~-s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~d 443 (515)
+|+|+|.+++||. ++.|. +..+|.||+|||||.| ..|.+++++...+
T Consensus 333 ~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~ 389 (720)
T PRK00254 333 AGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEE 389 (720)
T ss_pred hhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcc
Confidence 9999999999984 44433 4678999999999976 4599999987655
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=5.1e-42 Score=357.27 Aligned_cols=325 Identities=18% Similarity=0.216 Sum_probs=237.5
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 37 ~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
..+.+....++| +||++|.+|++.+......+ .+.+++||||||||++|++|++..+.. +.+++|++||++||
T Consensus 249 ~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~----g~q~lilaPT~~LA 323 (681)
T PRK10917 249 ELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA----GYQAALMAPTEILA 323 (681)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc----CCeEEEEeccHHHH
Confidence 344555566888 69999999999988755433 589999999999999999999988754 45899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcCcCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
.|+++.++++++..++++..++|+.+..+.... +..+.. .++|+|+||+.+.+ ..
T Consensus 324 ~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~------------------~~~l~~g~~~IvVgT~~ll~~------~v 379 (681)
T PRK10917 324 EQHYENLKKLLEPLGIRVALLTGSLKGKERREI------------------LEAIASGEADIVIGTHALIQD------DV 379 (681)
T ss_pred HHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHH------------------HHHHhCCCCCEEEchHHHhcc------cc
Confidence 999999999999889999999999886554322 223333 48999999987732 24
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||+|++...... .+.... ...+++++|
T Consensus 380 ~~~~l~lvVIDE~Hrfg~~qr~-----~l~~~~--------------------------------------~~~~iL~~S 416 (681)
T PRK10917 380 EFHNLGLVIIDEQHRFGVEQRL-----ALREKG--------------------------------------ENPHVLVMT 416 (681)
T ss_pred hhcccceEEEechhhhhHHHHH-----HHHhcC--------------------------------------CCCCEEEEe
Confidence 5678999999999997432221 111100 112679999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChh--------
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE-------- 343 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~-------- 343 (515)
||+.+...........+...+...... ...+..... ...+...+...+.. ..+.+++|||+.++
T Consensus 417 ATp~prtl~~~~~g~~~~s~i~~~p~~---r~~i~~~~~---~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 417 ATPIPRTLAMTAYGDLDVSVIDELPPG---RKPITTVVI---PDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred CCCCHHHHHHHHcCCCceEEEecCCCC---CCCcEEEEe---CcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHH
Confidence 998655443333222222222211110 011222221 12223333333332 24679999999643
Q ss_pred hHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-ChhhhHHh
Q 010196 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (515)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~-s~~~~~Qr 422 (515)
.++.+++.|.... .+..+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. ....|.||
T Consensus 491 ~~~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~ 569 (681)
T PRK10917 491 SAEETYEELQEAF-PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQL 569 (681)
T ss_pred HHHHHHHHHHHHC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHH
Confidence 4566777776543 237899999999999999999999999999999999999999999999999999986 46788999
Q ss_pred hhhcccCCCCccEEEEee
Q 010196 423 AGRTARAGQLGRCFTLLH 440 (515)
Q Consensus 423 ~GR~gR~g~~g~~~~~~~ 440 (515)
+||+||.|..|.|+++++
T Consensus 570 ~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 570 RGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred hhcccCCCCceEEEEEEC
Confidence 999999999999999995
No 48
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=2.2e-42 Score=363.32 Aligned_cols=343 Identities=20% Similarity=0.234 Sum_probs=246.4
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
|++.+.+.+.+.+|. ++++|.++++.+ ..++|++++||||||||+++.+++++.+..+ .+++|++|+++|+
T Consensus 8 l~~~~~~~~~~~~~~-l~~~Q~~ai~~l----~~~~nvlv~apTGSGKTl~a~lail~~l~~~----~k~v~i~P~raLa 78 (674)
T PRK01172 8 YDDEFLNLFTGNDFE-LYDHQRMAIEQL----RKGENVIVSVPTAAGKTLIAYSAIYETFLAG----LKSIYIVPLRSLA 78 (674)
T ss_pred CCHHHHHHHhhCCCC-CCHHHHHHHHHH----hcCCcEEEECCCCchHHHHHHHHHHHHHHhC----CcEEEEechHHHH
Confidence 999999999999995 999999998876 4589999999999999999999999887653 4799999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++++. ..+.++...+|+...... ....++|+|+||+++..++.+.. ..
T Consensus 79 ~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~------------------------~~~~~dIiv~Tpek~~~l~~~~~-~~ 132 (674)
T PRK01172 79 MEKYEELSRLR-SLGMRVKISIGDYDDPPD------------------------FIKRYDVVILTSEKADSLIHHDP-YI 132 (674)
T ss_pred HHHHHHHHHHh-hcCCeEEEEeCCCCCChh------------------------hhccCCEEEECHHHHHHHHhCCh-hH
Confidence 99999999864 457888888887653221 11346999999999988877643 34
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++||+||||.+.+.+++..++.++....... +..+++++||
T Consensus 133 l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~-----------------------------------~~~riI~lSA 177 (674)
T PRK01172 133 INDVGLIVADEIHIIGDEDRGPTLETVLSSARYVN-----------------------------------PDARILALSA 177 (674)
T ss_pred HhhcCEEEEecchhccCCCccHHHHHHHHHHHhcC-----------------------------------cCCcEEEEeC
Confidence 77899999999999988778777777766543211 2347899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccc-eeEEeccCCC-cHHHHHHHHHh--cCCCeEEEEcCChhhHHHHHH
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE-SYKLICESKL-KPLYLVALLQS--LGEEKCIVFTSSVESTHRLCT 350 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~ 350 (515)
|+++ ..++..+...... .......++...+. .......... ....+..++.. ..++++||||++++.++.++.
T Consensus 178 Tl~n-~~~la~wl~~~~~--~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~ 254 (674)
T PRK01172 178 TVSN-ANELAQWLNASLI--KSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAE 254 (674)
T ss_pred ccCC-HHHHHHHhCCCcc--CCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHH
Confidence 9964 3444433211111 10000000000000 0000011111 11112233332 246899999999999999999
Q ss_pred HHhhcCC----------------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEE
Q 010196 351 LLNHFGE----------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV 408 (515)
Q Consensus 351 ~L~~~~~----------------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI 408 (515)
.|..... ...++..+||+|++.+|..+++.|++|.++|||||+++++|+|+|+. .||
T Consensus 255 ~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~-~VI 333 (674)
T PRK01172 255 MLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPAR-LVI 333 (674)
T ss_pred HHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcce-EEE
Confidence 8865321 01257889999999999999999999999999999999999999975 555
Q ss_pred EccC---------CCChhhhHHhhhhcccCCCC--ccEEEEeechh-HHHHHHHH
Q 010196 409 NYDK---------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE-VKRFKKLL 451 (515)
Q Consensus 409 ~~~~---------p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d-~~~~~~~~ 451 (515)
+.+. |.+..+|.||+|||||.|.+ |.+++++...+ .+.+++++
T Consensus 334 I~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l 388 (674)
T PRK01172 334 VRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYL 388 (674)
T ss_pred EcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHH
Confidence 5443 45678999999999999864 77888775443 45555555
No 49
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=9.1e-42 Score=353.32 Aligned_cols=327 Identities=17% Similarity=0.221 Sum_probs=237.7
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 37 ~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
..+.+.+..++| +||+.|.+|++++...+... .+.+++||||||||++|++|++..+.. +.+++|++||++|+
T Consensus 223 ~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~----g~qvlilaPT~~LA 297 (630)
T TIGR00643 223 ELLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA----GYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc----CCcEEEECCHHHHH
Confidence 445667778899 79999999999988754332 478999999999999999999988765 44899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
.|+++.+++++...++++..++|+.+..+.... +..+. ..++|+|+||+.+.+ .+
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~------------------~~~i~~g~~~IiVgT~~ll~~------~~ 353 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKEL------------------LETIASGQIHLVVGTHALIQE------KV 353 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHH------------------HHHHhCCCCCEEEecHHHHhc------cc
Confidence 999999999998889999999999876554222 12233 357999999987743 24
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||+|++...... .+....... ...+++++|
T Consensus 354 ~~~~l~lvVIDEaH~fg~~qr~----~l~~~~~~~------------------------------------~~~~~l~~S 393 (630)
T TIGR00643 354 EFKRLALVIIDEQHRFGVEQRK----KLREKGQGG------------------------------------FTPHVLVMS 393 (630)
T ss_pred cccccceEEEechhhccHHHHH----HHHHhcccC------------------------------------CCCCEEEEe
Confidence 5678999999999986432221 111111000 012679999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCCh--------h
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV--------E 343 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~--------~ 343 (515)
||+.+...........+...+...... ...+.... .....+ ..+...+.. ..+.+++|||+.. .
T Consensus 394 ATp~prtl~l~~~~~l~~~~i~~~p~~---r~~i~~~~--~~~~~~-~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 394 ATPIPRTLALTVYGDLDTSIIDELPPG---RKPITTVL--IKHDEK-DIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred CCCCcHHHHHHhcCCcceeeeccCCCC---CCceEEEE--eCcchH-HHHHHHHHHHHHhCCcEEEEEccccccccchHH
Confidence 998654433322111111111110000 01112221 122222 334444432 2467899999876 4
Q ss_pred hHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-ChhhhHHh
Q 010196 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHR 422 (515)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~-s~~~~~Qr 422 (515)
.++.+++.|.... .+..+..+||+|++.+|.++++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.||
T Consensus 468 ~a~~~~~~L~~~~-~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~ 546 (630)
T TIGR00643 468 AAEALYERLKKAF-PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQL 546 (630)
T ss_pred HHHHHHHHHHhhC-CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHH
Confidence 5667777776543 357899999999999999999999999999999999999999999999999999986 57789999
Q ss_pred hhhcccCCCCccEEEEe
Q 010196 423 AGRTARAGQLGRCFTLL 439 (515)
Q Consensus 423 ~GR~gR~g~~g~~~~~~ 439 (515)
+||+||.|+.|.|++++
T Consensus 547 ~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 547 RGRVGRGDHQSYCLLVY 563 (630)
T ss_pred hhhcccCCCCcEEEEEE
Confidence 99999999999999998
No 50
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.1e-44 Score=303.39 Aligned_cols=312 Identities=26% Similarity=0.404 Sum_probs=264.9
Q ss_pred CCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 29 LDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 29 ~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
|.++. |.|++++++-..||+.|+.+|.+||+..+- |-|++.+|..|.|||.+|.+..++++..- .....++++|
T Consensus 44 frdfl-lkpellraivdcgfehpsevqhecipqail----gmdvlcqaksgmgktavfvl~tlqqiepv-~g~vsvlvmc 117 (387)
T KOG0329|consen 44 FRDFL-LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQIEPV-DGQVSVLVMC 117 (387)
T ss_pred hhhhh-cCHHHHHHHHhccCCCchHhhhhhhhHHhh----cchhheecccCCCceeeeehhhhhhcCCC-CCeEEEEEEe
Confidence 33443 999999999999999999999999887654 89999999999999999999999888653 2345689999
Q ss_pred ccHHHHHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHH
Q 010196 109 PTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (515)
Q Consensus 109 Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 187 (515)
.||+||-|+.+++.++.+.+ ++++...+||.+...... .+.+-|+|+|+||++++.+.
T Consensus 118 htrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee---------------------~lk~~PhivVgTPGrilALv 176 (387)
T KOG0329|consen 118 HTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEE---------------------LLKNCPHIVVGTPGRILALV 176 (387)
T ss_pred ccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHH---------------------HHhCCCeEEEcCcHHHHHHH
Confidence 99999999999888777665 689999999998765543 23456799999999999998
Q ss_pred hcCcCCCCCcceEEEEcchhHHHHH-HHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCc
Q 010196 188 NATRGFTLEHLCYLVVDETDRLLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (515)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
++ +.+++.+++..|+||||.|++. .....++.|.+.++..
T Consensus 177 r~-k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~-------------------------------------- 217 (387)
T KOG0329|consen 177 RN-RSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHE-------------------------------------- 217 (387)
T ss_pred Hh-ccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCccc--------------------------------------
Confidence 87 7789999999999999998864 4567778888776633
Q ss_pred eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHH
Q 010196 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTH 346 (515)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (515)
.|++.+|||++.++....+.++.+|..+.......-....++++++.....+|...+.+++....-+.++||+.+...
T Consensus 218 KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvIFvKsv~R-- 295 (387)
T KOG0329|consen 218 KQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVIFVKSVQR-- 295 (387)
T ss_pred ceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeEeeehhhh--
Confidence 388999999999999999999999998887776655556788999999999999999999998888999999977554
Q ss_pred HHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhc
Q 010196 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (515)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (515)
| . | ..+ +|+|++++||+|+..++.|+|||+|.+.++|+||+|||
T Consensus 296 -----l--------------------------~-f---~kr-~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rA 339 (387)
T KOG0329|consen 296 -----L--------------------------S-F---QKR-LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 339 (387)
T ss_pred -----h--------------------------h-h---hhh-hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhh
Confidence 0 0 2 123 89999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeechhH
Q 010196 427 ARAGQLGRCFTLLHKDEV 444 (515)
Q Consensus 427 gR~g~~g~~~~~~~~~d~ 444 (515)
||.|.+|.++.|++..+.
T Consensus 340 grfGtkglaitfvs~e~d 357 (387)
T KOG0329|consen 340 GRFGTKGLAITFVSDEND 357 (387)
T ss_pred hccccccceeehhcchhh
Confidence 999999999999976653
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=5.1e-42 Score=350.73 Aligned_cols=329 Identities=20% Similarity=0.213 Sum_probs=234.4
Q ss_pred HHHHHh-CCCCCcchhhHHHHHHHhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHhhhcccCcccE-EEEcccHHHHHH
Q 010196 40 KVALQN-MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA-LVVLPTRDLALQ 116 (515)
Q Consensus 40 ~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~-~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~-lil~Pt~~L~~q 116 (515)
.+.+.+ +||+ |+|||.++++.++ .|+ ++++++|||||||.++.++++... .. ...++. ++++|||+|+.|
T Consensus 5 ~~ff~~~~G~~-PtpiQ~~~i~~il----~G~~~v~~~apTGSGKTaa~aafll~~~-~~-~~~~~rLv~~vPtReLa~Q 77 (844)
T TIGR02621 5 DEWYQGLHGYS-PFPWQLSLAERFV----AGQPPESCSTPTGLGKTSIIAAWLLAVE-IG-AKVPRRLVYVVNRRTVVDQ 77 (844)
T ss_pred HHHHHHHhCCC-CCHHHHHHHHHHH----cCCCcceEecCCCCcccHHHHHhhcccc-cc-ccccceEEEeCchHHHHHH
Confidence 334444 5886 9999999998875 476 688899999999997765555322 21 233444 457799999999
Q ss_pred HHHHHHHhcccc-----------------------CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCC
Q 010196 117 VKDVFAAIAPAV-----------------------GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (515)
Q Consensus 117 ~~~~~~~~~~~~-----------------------~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (515)
+++.+++++..+ ++++..++||.+...+.. .+..++
T Consensus 78 i~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~---------------------~l~~~p 136 (844)
T TIGR02621 78 VTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWM---------------------LDPHRP 136 (844)
T ss_pred HHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHH---------------------hcCCCC
Confidence 999999988754 478899999988776653 455778
Q ss_pred cEEEeCChHHHHHHh-cCcC-------C---CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccc
Q 010196 174 DILVATPGRLMDHIN-ATRG-------F---TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPS 242 (515)
Q Consensus 174 ~Ivv~Tp~~l~~~l~-~~~~-------~---~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 242 (515)
+|+|+|++.+..-.. +... + .+++++++|+|||| ++++|.+.+..|+..+.....
T Consensus 137 ~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~------------ 202 (844)
T TIGR02621 137 AVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPD------------ 202 (844)
T ss_pred cEEEECHHHHcCCccccccccccccccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcc------------
Confidence 999999655432111 0000 0 15779999999999 688999999999886421100
Q ss_pred cccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHH
Q 010196 243 AFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY 322 (515)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 322 (515)
..+.|+++||||++.+........+.++..+........ ...+.++ +......+...
T Consensus 203 ---------------------~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~-a~ki~q~-v~v~~e~Kl~~ 259 (844)
T TIGR02621 203 ---------------------FLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLA-AKKIVKL-VPPSDEKFLST 259 (844)
T ss_pred ---------------------cccceEEEEecCCCccHHHHHHHHccCCceeeccccccc-ccceEEE-EecChHHHHHH
Confidence 011388999999988777666555556655444322212 1223333 22333334433
Q ss_pred HHHHH---HhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHH-----HHHHHHhc----CC-----
Q 010196 323 LVALL---QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRS-----KTLKAFRE----GK----- 385 (515)
Q Consensus 323 l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~-----~~l~~f~~----g~----- 385 (515)
+...+ ....++++||||||++.++.+++.|...+ + ..+||+|++.+|. .+++.|+. |+
T Consensus 260 lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g---~--~lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~ 334 (844)
T TIGR02621 260 MVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEK---F--ELLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQ 334 (844)
T ss_pred HHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcC---C--eEeeCCCCHHHHhhHHHHHHHHHHhcccccccccccc
Confidence 33322 12346789999999999999999998754 3 8899999999999 78999987 44
Q ss_pred --ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCc-cEEEEeec
Q 010196 386 --IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG-RCFTLLHK 441 (515)
Q Consensus 386 --~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g-~~~~~~~~ 441 (515)
..|||||+++++|+|++. ++||++..| .++|+||+||+||.|+.| ..+.++..
T Consensus 335 ~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~~~~~~i~vv~~ 390 (844)
T TIGR02621 335 QGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGELQACQIAVVHL 390 (844)
T ss_pred ccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCCCCCceEEEEee
Confidence 689999999999999986 888887766 689999999999999864 33555543
No 52
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.1e-41 Score=361.23 Aligned_cols=327 Identities=17% Similarity=0.189 Sum_probs=244.3
Q ss_pred CHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCC--CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 36 DPRLKVALQNMGISSLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~--~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
.+...+....++| +|++.|.+|++.+...+.+ +.|++++|+||+|||.+|+.++...+.. +.+++|++||++|
T Consensus 587 ~~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~----g~qvlvLvPT~eL 661 (1147)
T PRK10689 587 REQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN----HKQVAVLVPTTLL 661 (1147)
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc----CCeEEEEeCcHHH
Confidence 4455666778899 7999999999998775433 3799999999999999999888776543 4589999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
|.|+++.+++.+...++++..+.|+.+..++...+ ..+. ..++|+|+||+.+ . ..
T Consensus 662 A~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il------------------~~l~~g~~dIVVgTp~lL----~--~~ 717 (1147)
T PRK10689 662 AQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQIL------------------AEAAEGKIDILIGTHKLL----Q--SD 717 (1147)
T ss_pred HHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHH------------------HHHHhCCCCEEEECHHHH----h--CC
Confidence 99999999988777788888888888766553221 2233 3589999999744 2 23
Q ss_pred CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
+.+.++++||+||+|++... . ...+..+. +..+++++
T Consensus 718 v~~~~L~lLVIDEahrfG~~-~----~e~lk~l~--------------------------------------~~~qvLl~ 754 (1147)
T PRK10689 718 VKWKDLGLLIVDEEHRFGVR-H----KERIKAMR--------------------------------------ADVDILTL 754 (1147)
T ss_pred CCHhhCCEEEEechhhcchh-H----HHHHHhcC--------------------------------------CCCcEEEE
Confidence 45778999999999997221 1 12222211 22478999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCC-CcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHH
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~ 351 (515)
|||+.+.........+.++..+....... ..+..+....... .+...+.++. .+++++|||++++.++.+++.
T Consensus 755 SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~~~~~~k~~il~el~---r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 755 TATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREYDSLVVREAILREIL---RGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred cCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEecCcHHHHHHHHHHHh---cCCeEEEEECCHHHHHHHHHH
Confidence 99988777666666677777765433221 1222332221111 1112222222 367899999999999999999
Q ss_pred HhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC-CChhhhHHhhhhcccCC
Q 010196 352 LNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-AYIKTYIHRAGRTARAG 430 (515)
Q Consensus 352 L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p-~s~~~~~Qr~GR~gR~g 430 (515)
|.... .+.++..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||+.+.. .+..+|+||+||+||.|
T Consensus 829 L~~~~-p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g 907 (1147)
T PRK10689 829 LAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSH 907 (1147)
T ss_pred HHHhC-CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCC
Confidence 98763 23688999999999999999999999999999999999999999999999965432 24568999999999999
Q ss_pred CCccEEEEeec
Q 010196 431 QLGRCFTLLHK 441 (515)
Q Consensus 431 ~~g~~~~~~~~ 441 (515)
+.|.|+++...
T Consensus 908 ~~g~a~ll~~~ 918 (1147)
T PRK10689 908 HQAYAWLLTPH 918 (1147)
T ss_pred CceEEEEEeCC
Confidence 99999998754
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=1.2e-40 Score=359.67 Aligned_cols=306 Identities=21% Similarity=0.281 Sum_probs=218.4
Q ss_pred EECCCCchhHHHhHHHHHHHhhhcc---------cCcccEEEEcccHHHHHHHHHHHHHhc------------cccCcEE
Q 010196 74 INSPTGSGKTLSYALPIVQTLSNRA---------VRCLRALVVLPTRDLALQVKDVFAAIA------------PAVGLSV 132 (515)
Q Consensus 74 i~a~TGsGKT~~~~~~~~~~l~~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~~------------~~~~~~v 132 (515)
|+||||||||++|.+|++..+.... ..+.++|||+|+++|+.|+.+.++..+ ...+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5799999999999999999987532 235789999999999999999887522 1247899
Q ss_pred EEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHH
Q 010196 133 GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (515)
Q Consensus 133 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~ 212 (515)
...+|+++..++.. .++++++|+|+||++|..++.+.....++++++|||||+|.+.+.
T Consensus 81 ~vrtGDt~~~eR~r---------------------ll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~ 139 (1490)
T PRK09751 81 GIRTGDTPAQERSK---------------------LTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS 139 (1490)
T ss_pred EEEECCCCHHHHHH---------------------HhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc
Confidence 99999998776643 234578999999999998876532235789999999999999877
Q ss_pred HHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhccc-CCC
Q 010196 213 AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHP 291 (515)
Q Consensus 213 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~ 291 (515)
.++..+...+..+..... ...|++++|||+.+ ..+...+.. ..+
T Consensus 140 kRG~~Lel~LeRL~~l~~----------------------------------~~~QrIgLSATI~n-~eevA~~L~g~~p 184 (1490)
T PRK09751 140 KRGAHLALSLERLDALLH----------------------------------TSAQRIGLSATVRS-ASDVAAFLGGDRP 184 (1490)
T ss_pred ccccHHHHHHHHHHHhCC----------------------------------CCCeEEEEEeeCCC-HHHHHHHhcCCCC
Confidence 666666555554432110 22489999999975 444444322 234
Q ss_pred eeEeeCCccccCCcccceeEEeccCC--------------------C-cHHHHHHHHHh-cCCCeEEEEcCChhhHHHHH
Q 010196 292 LFLTTGETRYKLPERLESYKLICESK--------------------L-KPLYLVALLQS-LGEEKCIVFTSSVESTHRLC 349 (515)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~-k~~~l~~~l~~-~~~~~~lVf~~s~~~~~~l~ 349 (515)
..+......... .++.. +..... . .......++.. ....++||||||+..|+.++
T Consensus 185 v~Iv~~~~~r~~--~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La 261 (1490)
T PRK09751 185 VTVVNPPAMRHP--QIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLT 261 (1490)
T ss_pred EEEECCCCCccc--ceEEE-EecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHH
Confidence 433221111111 11111 110000 0 00111122322 24678999999999999999
Q ss_pred HHHhhcCCC------------------------------ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccC
Q 010196 350 TLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGM 399 (515)
Q Consensus 350 ~~L~~~~~~------------------------------~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~Gi 399 (515)
..|++.... ...+..|||++++++|..+++.|++|++++||||+++++||
T Consensus 262 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGI 341 (1490)
T PRK09751 262 ARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGI 341 (1490)
T ss_pred HHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccC
Confidence 999764210 12367899999999999999999999999999999999999
Q ss_pred CCCCCCEEEEccCCCChhhhHHhhhhcccCC-CCccEEEE
Q 010196 400 DVEGVNNVVNYDKPAYIKTYIHRAGRTARAG-QLGRCFTL 438 (515)
Q Consensus 400 Di~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g-~~g~~~~~ 438 (515)
|++++++||+++.|.++.+|+||+||+||.. ..+.++++
T Consensus 342 DIg~VDlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~ 381 (1490)
T PRK09751 342 DMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFF 381 (1490)
T ss_pred CcccCCEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEE
Confidence 9999999999999999999999999999972 22444433
No 54
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.2e-38 Score=295.76 Aligned_cols=322 Identities=21% Similarity=0.290 Sum_probs=233.8
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
.++|.||......++ .+|.+++.|||.|||+.+++.+..++... ++ ++|+++||+.|+.|.++.+++...--
T Consensus 14 ie~R~YQ~~i~a~al-----~~NtLvvlPTGLGKT~IA~~V~~~~l~~~--~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 14 IEPRLYQLNIAAKAL-----FKNTLVVLPTGLGKTFIAAMVIANRLRWF--GG-KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred ccHHHHHHHHHHHHh-----hcCeEEEecCCccHHHHHHHHHHHHHHhc--CC-eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 479999998876654 56999999999999999999999888874 34 79999999999999999999997655
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
...++.++|.....+....+ ...+|+|+||+.+.+-+.. +.+++.++.++||||||+
T Consensus 86 ~~~i~~ltGev~p~~R~~~w----------------------~~~kVfvaTPQvveNDl~~-Grid~~dv~~lifDEAHR 142 (542)
T COG1111 86 EDEIAALTGEVRPEEREELW----------------------AKKKVFVATPQVVENDLKA-GRIDLDDVSLLIFDEAHR 142 (542)
T ss_pred hhheeeecCCCChHHHHHHH----------------------hhCCEEEeccHHHHhHHhc-CccChHHceEEEechhhh
Confidence 56788999998877664433 3458999999999988887 558899999999999998
Q ss_pred HHHH-HHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhc-
Q 010196 209 LLRE-AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL- 286 (515)
Q Consensus 209 l~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~- 286 (515)
.... .+-.....++..- ....++.+|||+.++.......
T Consensus 143 AvGnyAYv~Va~~y~~~~---------------------------------------k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 143 AVGNYAYVFVAKEYLRSA---------------------------------------KNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred ccCcchHHHHHHHHHHhc---------------------------------------cCceEEEEecCCCCCHHHHHHHH
Confidence 5322 2222222222221 1125678888887653322210
Q ss_pred ---ccCCCeeEee----------------------------------------------------CCc--cccC---C--
Q 010196 287 ---DLHHPLFLTT----------------------------------------------------GET--RYKL---P-- 304 (515)
Q Consensus 287 ---~~~~~~~~~~----------------------------------------------------~~~--~~~~---~-- 304 (515)
...+ +.+.. ... ...+ .
T Consensus 184 ~nLgIe~-vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~ 262 (542)
T COG1111 184 ENLGIEK-VEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQI 262 (542)
T ss_pred HhCCcce-EEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHH
Confidence 0000 00000 000 0000 0
Q ss_pred -----cccc-------------------------------------------------------------------eeEE
Q 010196 305 -----ERLE-------------------------------------------------------------------SYKL 312 (515)
Q Consensus 305 -----~~~~-------------------------------------------------------------------~~~~ 312 (515)
.... ....
T Consensus 263 ~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~ 342 (542)
T COG1111 263 RLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADE 342 (542)
T ss_pred HHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhcc
Confidence 0000 0000
Q ss_pred eccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEE-------EccCccCHHHHHHHHHHH
Q 010196 313 ICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIK-------EYSGLQRQSVRSKTLKAF 381 (515)
Q Consensus 313 ~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~-------~~~~~~~~~~r~~~l~~f 381 (515)
....+.|+..+.+++.. ..+.++|||++.+++++.+.+.|...+.. ..+. ....||+++++.++++.|
T Consensus 343 ~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~-~~~rFiGQa~r~~~~GMsQkeQ~eiI~~F 421 (542)
T COG1111 343 SGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK-ARVRFIGQASREGDKGMSQKEQKEIIDQF 421 (542)
T ss_pred ccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc-ceeEEeeccccccccccCHHHHHHHHHHH
Confidence 11133455555555542 34579999999999999999999887632 1111 223579999999999999
Q ss_pred hcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 382 ~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
+.|+.+|||||+++++|+|+|++++||.|++-.|+..++||.|||||. +.|.+++++..++
T Consensus 422 r~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt~gt 482 (542)
T COG1111 422 RKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVTEGT 482 (542)
T ss_pred hcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhhCccccC-CCCeEEEEEecCc
Confidence 999999999999999999999999999999999999999999999998 7899999999884
No 55
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=8.9e-38 Score=336.96 Aligned_cols=319 Identities=22% Similarity=0.343 Sum_probs=220.8
Q ss_pred HHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 39 LKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 39 l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
+.+.+++ +|+ +|+++|..+++.++ .|+|++++||||+|||. |.+++...+.. .+.+++||+||++|+.|+
T Consensus 69 ~~~~f~~~~G~-~pt~iQ~~~i~~il----~g~dv~i~ApTGsGKT~-f~l~~~~~l~~---~g~~alIL~PTreLa~Qi 139 (1176)
T PRK09401 69 FEKFFKKKTGS-KPWSLQRTWAKRLL----LGESFAIIAPTGVGKTT-FGLVMSLYLAK---KGKKSYIIFPTRLLVEQV 139 (1176)
T ss_pred HHHHHHHhcCC-CCcHHHHHHHHHHH----CCCcEEEEcCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeccHHHHHHH
Confidence 3334433 577 89999999988775 59999999999999996 55555555433 356899999999999999
Q ss_pred HHHHHHhccccCcEEEEeecCCchH-HHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcCCCC
Q 010196 118 KDVFAAIAPAVGLSVGLAVGQSSIA-DEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTL 195 (515)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~ 195 (515)
++.++.++...++.+..+.|+.... .+. ......+. ..++|+|+||++|.+++.. +..
T Consensus 140 ~~~l~~l~~~~~~~~~~~~g~~~~~~~ek-----------------~~~~~~l~~~~~~IlV~Tp~rL~~~~~~---l~~ 199 (1176)
T PRK09401 140 VEKLEKFGEKVGCGVKILYYHSSLKKKEK-----------------EEFLERLKEGDFDILVTTSQFLSKNFDE---LPK 199 (1176)
T ss_pred HHHHHHHhhhcCceEEEEEccCCcchhHH-----------------HHHHHHHhcCCCCEEEECHHHHHHHHHh---ccc
Confidence 9999999988888888887775421 111 11112233 3589999999999988763 445
Q ss_pred CcceEEEEcchhHHHH-----------HHHH-hHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCC
Q 010196 196 EHLCYLVVDETDRLLR-----------EAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (515)
Q Consensus 196 ~~~~~vViDEah~l~~-----------~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
..+++||+||||+|++ .+|. +.+..++..++..... ......+..+..... .+.
T Consensus 200 ~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~~---------~~~~~~i~~l~~~i~--~~~--- 265 (1176)
T PRK09401 200 KKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRKY---------EEIYEKIRELEEKIA--ELK--- 265 (1176)
T ss_pred cccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhccccccc---------chhhhHHHHHHHhhh--hcc---
Confidence 6799999999999986 4453 5666777665431110 000001111110000 000
Q ss_pred CCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChh
Q 010196 264 YPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVE 343 (515)
Q Consensus 264 ~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~ 343 (515)
....|.+++|||.++..... ..+.++..+..+.... ....+.+.++... .+...+..++.... .++||||+++.
T Consensus 266 ~~~~q~ilfSAT~~~~~~~~--~l~~~ll~~~v~~~~~-~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~ 339 (1176)
T PRK09401 266 DKKGVLVVSSATGRPRGNRV--KLFRELLGFEVGSPVF-YLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDK 339 (1176)
T ss_pred cCCceEEEEeCCCCccchHH--HHhhccceEEecCccc-ccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEeccc
Confidence 01348899999997642211 1122333333333222 2234555555443 57777888887654 68999999988
Q ss_pred h---HHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEe----cCCccccCCCCC-CCEEEEccCCC
Q 010196 344 S---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA 414 (515)
Q Consensus 344 ~---~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~----T~~~~~GiDi~~-v~~VI~~~~p~ 414 (515)
. ++.+++.|...+ +++..+||+| ...++.|++|+++|||| |++++||||+|+ +++||+|++|.
T Consensus 340 ~~~~ae~l~~~L~~~g---i~v~~~hg~l-----~~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~ 410 (1176)
T PRK09401 340 GKEYAEELAEYLEDLG---INAELAISGF-----ERKFEKFEEGEVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPK 410 (1176)
T ss_pred ChHHHHHHHHHHHHCC---CcEEEEeCcH-----HHHHHHHHCCCCCEEEEecCCCCceeecCCCCcceeEEEEeCCCC
Confidence 8 999999999876 8999999999 23459999999999999 699999999999 89999999996
No 56
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=301.08 Aligned_cols=346 Identities=25% Similarity=0.294 Sum_probs=268.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccE
Q 010196 25 EDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRA 104 (515)
Q Consensus 25 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~ 104 (515)
+.++++.+. +++++.+.|+..|++++.|+|.-|+.. .++.|.|.++..+|+||||++.-++-+..+..+ +.+.
T Consensus 192 ~r~~vdeLd-ipe~fk~~lk~~G~~eLlPVQ~laVe~---GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~---g~Km 264 (830)
T COG1202 192 ERVPVDELD-IPEKFKRMLKREGIEELLPVQVLAVEA---GLLEGENLLVVSATASGKTLIGELAGIPRLLSG---GKKM 264 (830)
T ss_pred ccccccccC-CcHHHHHHHHhcCcceecchhhhhhhh---ccccCCceEEEeccCCCcchHHHhhCcHHHHhC---CCeE
Confidence 345666664 999999999999999999999999643 457899999999999999999988888777663 3489
Q ss_pred EEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHH
Q 010196 105 LVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM 184 (515)
Q Consensus 105 lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~ 184 (515)
|++||..+||+|-+++|++--..+++.+.+-+|-.-..... +-+.......+||+|+|++-+-
T Consensus 265 lfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~-----------------~pv~~~t~~dADIIVGTYEGiD 327 (830)
T COG1202 265 LFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTRE-----------------EPVVVDTSPDADIIVGTYEGID 327 (830)
T ss_pred EEEehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccC-----------------CccccCCCCCCcEEEeechhHH
Confidence 99999999999999999987788898888877764322210 0011112345799999999986
Q ss_pred HHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCC
Q 010196 185 DHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPY 264 (515)
Q Consensus 185 ~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
.+++.. ..+.++..|||||+|.+-+...+..+.-++..+... +
T Consensus 328 ~lLRtg--~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l-----------------------------------~ 370 (830)
T COG1202 328 YLLRTG--KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYL-----------------------------------F 370 (830)
T ss_pred HHHHcC--CcccccceEEeeeeeeccchhcccchhhHHHHHHHh-----------------------------------C
Confidence 666653 558899999999999988878888787777665432 2
Q ss_pred CceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec-cCCCcHHHHHHHHHhc--------CCCeE
Q 010196 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSL--------GEEKC 335 (515)
Q Consensus 265 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~--------~~~~~ 335 (515)
|..|++.+|||+ .+..++++..-..++.+...+ ..++.+.+++ +..+|...+..+.+.. -.+++
T Consensus 371 ~~AQ~i~LSATV-gNp~elA~~l~a~lV~y~~RP------VplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQt 443 (830)
T COG1202 371 PGAQFIYLSATV-GNPEELAKKLGAKLVLYDERP------VPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQT 443 (830)
T ss_pred CCCeEEEEEeec-CChHHHHHHhCCeeEeecCCC------CChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCce
Confidence 445999999998 455666665544444443322 2233333444 4667777666666432 24689
Q ss_pred EEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEcc----
Q 010196 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---- 411 (515)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~---- 411 (515)
|||++|+..|+.++..|...| +++..||++++..+|..+...|.++++.++|+|.+++-|+|||. +.||.-.
T Consensus 444 IVFT~SRrr~h~lA~~L~~kG---~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPA-SQVIFEsLaMG 519 (830)
T COG1202 444 IVFTYSRRRCHELADALTGKG---LKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPA-SQVIFESLAMG 519 (830)
T ss_pred EEEecchhhHHHHHHHhhcCC---cccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCch-HHHHHHHHHcc
Confidence 999999999999999999876 99999999999999999999999999999999999999999994 5555432
Q ss_pred -CCCChhhhHHhhhhcccCCC--CccEEEEeech
Q 010196 412 -KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKD 442 (515)
Q Consensus 412 -~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~ 442 (515)
-.-|+..|.|++|||||-+- .|.+++++.+.
T Consensus 520 ~~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 520 IEWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred cccCCHHHHHHHhcccCCCCcccCceEEEEecCC
Confidence 24579999999999999764 39999998764
No 57
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=5.4e-38 Score=327.61 Aligned_cols=306 Identities=19% Similarity=0.250 Sum_probs=223.3
Q ss_pred HhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH-hccccCcEEEEeecCCc
Q 010196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSS 140 (515)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~v~~~~g~~~ 140 (515)
++..+..+++++++|+||||||.++.+++++... .+.+++++.|+|++|.|+++.+.+ +....+..|+..++..+
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~ 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEcccc
Confidence 3444456889999999999999999999997763 234899999999999999998864 44445666666554432
Q ss_pred hHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH-HHHHHHHh-HH
Q 010196 141 IADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQA-WL 218 (515)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~-l~~~~~~~-~~ 218 (515)
.....++|+|+||++|++.+... ..++++++|||||+|. +++.++.- .+
T Consensus 86 ---------------------------~~s~~t~I~v~T~G~Llr~l~~d--~~L~~v~~VIiDEaHER~L~~Dl~L~ll 136 (819)
T TIGR01970 86 ---------------------------KVSRRTRLEVVTEGILTRMIQDD--PELDGVGALIFDEFHERSLDADLGLALA 136 (819)
T ss_pred ---------------------------ccCCCCcEEEECCcHHHHHHhhC--cccccCCEEEEeccchhhhccchHHHHH
Confidence 11234689999999999988763 4578999999999994 66544432 22
Q ss_pred HHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC
Q 010196 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (515)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
..+...+. +..++++||||+.... + ..++.++..+....
T Consensus 137 ~~i~~~lr--------------------------------------~dlqlIlmSATl~~~~--l-~~~l~~~~vI~~~g 175 (819)
T TIGR01970 137 LDVQSSLR--------------------------------------EDLKILAMSATLDGER--L-SSLLPDAPVVESEG 175 (819)
T ss_pred HHHHHhcC--------------------------------------CCceEEEEeCCCCHHH--H-HHHcCCCcEEEecC
Confidence 33332221 2348899999996532 2 23333333333322
Q ss_pred ccccCCcccceeEEeccCCCcH-----HHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHH
Q 010196 299 TRYKLPERLESYKLICESKLKP-----LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (515)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~-----~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~ 373 (515)
..+ .++.++.......+. ..+..++.. ..+.+|||+++..+++.+++.|......++.+..+||+|++.+
T Consensus 176 r~~----pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 176 RSF----PVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAA 250 (819)
T ss_pred cce----eeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHH
Confidence 221 133444443333332 223333333 3678999999999999999999863224588999999999999
Q ss_pred HHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCC------------------hhhhHHhhhhcccCCCCccE
Q 010196 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLGRC 435 (515)
Q Consensus 374 r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s------------------~~~~~Qr~GR~gR~g~~g~~ 435 (515)
|.++++.|++|..+|||||+++++|||+|+|++||++++|.. -.+|.||.||+||. .+|.|
T Consensus 251 q~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~c 329 (819)
T TIGR01970 251 QDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL-EPGVC 329 (819)
T ss_pred HHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC-CCCEE
Confidence 999999999999999999999999999999999999998753 23589999999999 79999
Q ss_pred EEEeechhHHHH
Q 010196 436 FTLLHKDEVKRF 447 (515)
Q Consensus 436 ~~~~~~~d~~~~ 447 (515)
|.++++++...+
T Consensus 330 yrL~t~~~~~~l 341 (819)
T TIGR01970 330 YRLWSEEQHQRL 341 (819)
T ss_pred EEeCCHHHHHhh
Confidence 999998875443
No 58
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=4.1e-38 Score=346.31 Aligned_cols=362 Identities=17% Similarity=0.210 Sum_probs=251.8
Q ss_pred HHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 37 PRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 37 ~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.++.+.+++ +|| +|+++|.++++.++. |+|+++.||||+|||++++++++.... ++.+++||+||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~----G~d~li~APTGsGKTl~~~~~al~~~~----~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILR----GKSFSIVAPTGMGKSTFGAFIALFLAL----KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHc----CCCEEEEEcCCCCHHHHHHHHHHHHHh----cCCeEEEEECHHHHHH
Confidence 355666666 899 699999999888764 999999999999999976666554432 3458999999999999
Q ss_pred HHHHHHHHhcccc--CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcCcC
Q 010196 116 QVKDVFAAIAPAV--GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 116 q~~~~~~~~~~~~--~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
|+++.++.++... ++++..++|+.+..++... +..+.. .++|+|+||++|.+.+...
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~------------------~~~l~~g~~dILV~TPgrL~~~~~~l-- 196 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEF------------------LERIENGDFDILVTTAQFLARNFPEM-- 196 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHH------------------HHHHhcCCCCEEEECCchhHHhHHHH--
Confidence 9999999988765 4677888898876655322 223333 4899999999998876541
Q ss_pred CCCCcceEEEEcchhHHHHH-----------HHHhHHHH-HHhhcccCcccccCCccccccccccchhhhhccccccCCC
Q 010196 193 FTLEHLCYLVVDETDRLLRE-----------AYQAWLPT-VLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~-----------~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (515)
. ..+++++|+||||+|+++ +|.+.+.. ++..+....... .......+..+.... .
T Consensus 197 ~-~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~-------~~~~~~~~~~l~~~~-----~ 263 (1638)
T PRK14701 197 K-HLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGN-------IEDAMEKREILNKEI-----E 263 (1638)
T ss_pred h-hCCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccc-------cchhhhhhhhhhhhh-----h
Confidence 1 267899999999999863 45444432 222221100000 000000000000000 0
Q ss_pred CCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcC
Q 010196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTS 340 (515)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~ 340 (515)
..+......+++|||.+..... . ..+.++..+..+.....+ ..+.+.++......+ ..+..++... +..+||||+
T Consensus 264 ~~~~~~~~ll~~SAT~~~r~~~-~-~l~~~~l~f~v~~~~~~l-r~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~ 338 (1638)
T PRK14701 264 KIGNKIGCLIVASATGKAKGDR-V-KLYRELLGFEVGSGRSAL-RNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVP 338 (1638)
T ss_pred hcCCCccEEEEEecCCCchhHH-H-HHhhcCeEEEecCCCCCC-CCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEe
Confidence 0011122357799998753211 1 223556666665554333 334455554443333 5677777765 578999999
Q ss_pred Chhh---HHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEec----CCccccCCCCC-CCEEEEccC
Q 010196 341 SVES---THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDK 412 (515)
Q Consensus 341 s~~~---~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T----~~~~~GiDi~~-v~~VI~~~~ 412 (515)
+++. |+.+++.|...+ +++..+||+ |...++.|++|+++||||| ++++||||+|+ |++||+||+
T Consensus 339 t~~~~e~ae~la~~L~~~G---i~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~ 410 (1638)
T PRK14701 339 IDEGAEKAEEIEKYLLEDG---FKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGV 410 (1638)
T ss_pred ccccchHHHHHHHHHHHCC---CeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCC
Confidence 9876 589999999866 899999995 8899999999999999999 58999999999 999999999
Q ss_pred CC---ChhhhHHhh-------------hhcccCCCCccEEEEeechhHHHHHHHHHH
Q 010196 413 PA---YIKTYIHRA-------------GRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 413 p~---s~~~~~Qr~-------------GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~ 453 (515)
|+ +.+.|.|.. ||+||.|..+.++....+.+...+++++.+
T Consensus 411 Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~ 467 (1638)
T PRK14701 411 PKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFLRSILKD 467 (1638)
T ss_pred CCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHHHHHhcc
Confidence 99 887777765 999999998888777777777777776655
No 59
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=1.3e-38 Score=290.28 Aligned_cols=382 Identities=19% Similarity=0.220 Sum_probs=265.9
Q ss_pred HHHHHHHh-CCCCCc-chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 38 RLKVALQN-MGISSL-FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 38 ~l~~~l~~-~~~~~~-~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.+.++|++ ||+..+ ++.|++|+..+.. ..+||.+++|||+||+++|.+|.+ ..+..+||+.|..+|+.
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK---~k~DVyVsMPTGaGKSLCyQLPaL-------~~~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVK---RKCDVYVSMPTGAGKSLCYQLPAL-------VHGGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHh---ccCcEEEeccCCCchhhhhhchHH-------HhCCeEEEehHHHHHHH
Confidence 45667776 688776 8999999877764 579999999999999999999998 23337999999999999
Q ss_pred HHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHH-----HHHhcC
Q 010196 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINAT 190 (515)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-----~~l~~~ 190 (515)
++.+.+.++ .+++..+.+..+..+..+-+..- ..-+....+++.||+.-. .++..
T Consensus 76 DQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL---------------~~ekp~~K~LYITPE~AAt~~FQ~lLn~- 135 (641)
T KOG0352|consen 76 DQIDHLKRL----KVPCESLNSKLSTVERSRIMGDL---------------AKEKPTIKMLYITPEGAATDGFQKLLNG- 135 (641)
T ss_pred HHHHHHHhc----CCchhHhcchhhHHHHHHHHHHH---------------HhcCCceeEEEEchhhhhhhhHHHHHHH-
Confidence 999998887 56666676666655543222100 011234679999998642 23322
Q ss_pred cCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 191 ~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
..+-..+.++|+||||+...+++ +|.|.|+..-. .+..++.++.+
T Consensus 136 -L~~r~~L~Y~vVDEAHCVSQWGH-----------------------DFRPDYL~LG~-----------LRS~~~~vpwv 180 (641)
T KOG0352|consen 136 -LANRDVLRYIVVDEAHCVSQWGH-----------------------DFRPDYLTLGS-----------LRSVCPGVPWV 180 (641)
T ss_pred -HhhhceeeeEEechhhhHhhhcc-----------------------ccCcchhhhhh-----------HHhhCCCCceE
Confidence 11344688999999999865543 22233221111 11123556789
Q ss_pred EEEEEecCCchh--hhhcccCCCeeEeeCCc-cccCCcccceeEEeccCCCcHHHHHHHHHh-------------cCCCe
Q 010196 271 VLSATLTQDPNK--LAQLDLHHPLFLTTGET-RYKLPERLESYKLICESKLKPLYLVALLQS-------------LGEEK 334 (515)
Q Consensus 271 ~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~-------------~~~~~ 334 (515)
.++||.+..+.+ ...+.+.+|+-+...+. +.++...+..-..+ .+-...|.++-.+ ...+.
T Consensus 181 ALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I---~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GC 257 (641)
T KOG0352|consen 181 ALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI---TDCLTVLADFSSSNLGKHEKASQNKKTFTGC 257 (641)
T ss_pred EeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh---hhHhHhHHHHHHHhcCChhhhhcCCCCcCcc
Confidence 999999887766 44566777765533221 11111100000000 1111112221111 12357
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC
Q 010196 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA 414 (515)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~ 414 (515)
.||||.|++.|+.++-.|...| ++...||.++...+|.++.+.|.+++..||++|..+++|+|-|+|++||++++|.
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~G---i~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 258 GIVYCRTRNECEQVAIMLEIAG---IPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred eEEEeccHHHHHHHHHHhhhcC---cchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchh
Confidence 8999999999999999998777 8999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhccc
Q 010196 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRK 494 (515)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (515)
|+..|.|..||+||+|...+|-++++..|.+.+.-+++....+... ....+......-...+++.+.+|+..||-
T Consensus 335 n~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~FLi~~e~aklre-----k~~ke~~~k~~I~~F~k~~eFCE~~~CRH 409 (641)
T KOG0352|consen 335 NLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNFLVSGELAKLRE-----KAKKEMQIKSIITGFAKMLEFCESARCRH 409 (641)
T ss_pred hhHHHHHhccccccCCCccceeeeecccchHHHHHHHhhHHHHHHH-----hcchhhhHHHHHHHHHHHHHHHHHcccch
Confidence 9999999999999999999999999999988877666542111000 01112233444556677888888777765
Q ss_pred c
Q 010196 495 H 495 (515)
Q Consensus 495 ~ 495 (515)
.
T Consensus 410 ~ 410 (641)
T KOG0352|consen 410 V 410 (641)
T ss_pred H
Confidence 4
No 60
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=6.1e-38 Score=319.55 Aligned_cols=323 Identities=15% Similarity=0.128 Sum_probs=226.4
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHH---------hHHHHHHHhhhc--ccCcccEEEEcccHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS---------YALPIVQTLSNR--AVRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~---------~~~~~~~~l~~~--~~~~~~~lil~Pt~~L~~q~~ 118 (515)
.+++.|.++-.++++.+..+++++++|+||||||.+ |++|.+..+..- .....++++++||++|+.|+.
T Consensus 160 ~l~~~~~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~ 239 (675)
T PHA02653 160 PLASLQPDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHS 239 (675)
T ss_pred cCCchhHHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHH
Confidence 477777777777777777899999999999999997 444455444321 123457999999999999999
Q ss_pred HHHHHhccc---cCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCC
Q 010196 119 DVFAAIAPA---VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTL 195 (515)
Q Consensus 119 ~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~ 195 (515)
..+.+.... .+..+...+|+.+.... .....+.+|+++|++... ..+
T Consensus 240 ~~i~~~vg~~~~~g~~v~v~~Gg~~~~~~----------------------~t~~k~~~Ilv~T~~L~l--------~~L 289 (675)
T PHA02653 240 ITLLKSLGFDEIDGSPISLKYGSIPDELI----------------------NTNPKPYGLVFSTHKLTL--------NKL 289 (675)
T ss_pred HHHHHHhCccccCCceEEEEECCcchHHh----------------------hcccCCCCEEEEeCcccc--------ccc
Confidence 998875543 35677888888762110 011235689999976311 236
Q ss_pred CcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEE
Q 010196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (515)
Q Consensus 196 ~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 275 (515)
+++++||+||||.+...+ +.+..++..... ...++++||||
T Consensus 290 ~~v~~VVIDEaHEr~~~~--DllL~llk~~~~-------------------------------------~~rq~ILmSAT 330 (675)
T PHA02653 290 FDYGTVIIDEVHEHDQIG--DIIIAVARKHID-------------------------------------KIRSLFLMTAT 330 (675)
T ss_pred ccCCEEEccccccCccch--hHHHHHHHHhhh-------------------------------------hcCEEEEEccC
Confidence 789999999999975554 333333322110 01178999999
Q ss_pred ecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccC----------CCcHHHHHHHHHh---cCCCeEEEEcCCh
Q 010196 276 LTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICES----------KLKPLYLVALLQS---LGEEKCIVFTSSV 342 (515)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~k~~~l~~~l~~---~~~~~~lVf~~s~ 342 (515)
++.+...+. .++.+|..+..... ....+++++..... ..+.. +...+.. ..++.+|||++++
T Consensus 331 l~~dv~~l~-~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~-~l~~L~~~~~~~~g~iLVFlpg~ 405 (675)
T PHA02653 331 LEDDRDRIK-EFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKN-IVTALKKYTPPKGSSGIVFVASV 405 (675)
T ss_pred CcHhHHHHH-HHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHH-HHHHHHHhhcccCCcEEEEECcH
Confidence 987776653 45566666554321 11223333332211 11222 2333332 2356899999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHH-hcCCceEEEecCCccccCCCCCCCEEEEcc---CCC----
Q 010196 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF-REGKIQVLVSSDAMTRGMDVEGVNNVVNYD---KPA---- 414 (515)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f-~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~---~p~---- 414 (515)
.+++.+++.|.... .++.+..+||++++. ++.+++| ++|+.+|||||+++++|+|+|++++||+++ .|.
T Consensus 406 ~ei~~l~~~L~~~~-~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g 482 (675)
T PHA02653 406 SQCEEYKKYLEKRL-PIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGG 482 (675)
T ss_pred HHHHHHHHHHHhhc-CCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccC
Confidence 99999999998652 247899999999974 5677787 689999999999999999999999999998 554
Q ss_pred -----ChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHH
Q 010196 415 -----YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450 (515)
Q Consensus 415 -----s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~ 450 (515)
|..+|+||+|||||. ++|.|+.++++++...+.++
T Consensus 483 ~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~~~~pI~ri 522 (675)
T PHA02653 483 KEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLDLLKPIKRI 522 (675)
T ss_pred cccccCHHHHHHhccCcCCC-CCCeEEEEECHHHhHHHHHH
Confidence 778999999999999 78999999998876544443
No 61
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=3.2e-37 Score=308.96 Aligned_cols=353 Identities=22% Similarity=0.243 Sum_probs=245.6
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|+|+|..+++.++ .|+ |.++.||+|||++|++|++..... +..++|++||++||.|.++++.++.
T Consensus 100 lg~-~p~~VQ~~~~~~ll----~G~--Iae~~TGeGKTla~~lp~~~~al~----G~~v~VvTptreLA~qdae~~~~l~ 168 (656)
T PRK12898 100 LGQ-RHFDVQLMGGLALL----SGR--LAEMQTGEGKTLTATLPAGTAALA----GLPVHVITVNDYLAERDAELMRPLY 168 (656)
T ss_pred hCC-CCChHHHHHHHHHh----CCC--eeeeeCCCCcHHHHHHHHHHHhhc----CCeEEEEcCcHHHHHHHHHHHHHHH
Confidence 566 79999999987765 466 999999999999999999987654 3489999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcC------------
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG------------ 192 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~------------ 192 (515)
..+++++++++|+.+.... ....+++|+|+|...| .++|+..-.
T Consensus 169 ~~lGlsv~~i~gg~~~~~r-----------------------~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~ 225 (656)
T PRK12898 169 EALGLTVGCVVEDQSPDER-----------------------RAAYGADITYCTNKELVFDYLRDRLALGQRASDARLAL 225 (656)
T ss_pred hhcCCEEEEEeCCCCHHHH-----------------------HHHcCCCEEEECCCchhhhhccccccccccccchhhhh
Confidence 9999999999999764332 1234679999999877 455543211
Q ss_pred ------------CCCCcceEEEEcchhHHHHH------------------HHHhHHHHHHhhcccCcccc----------
Q 010196 193 ------------FTLEHLCYLVVDETDRLLRE------------------AYQAWLPTVLQLTRSDNENR---------- 232 (515)
Q Consensus 193 ------------~~~~~~~~vViDEah~l~~~------------------~~~~~~~~i~~~~~~~~~~~---------- 232 (515)
.....+.+.|+||+|.++-+ .+..+...+...+.....-.
T Consensus 226 ~~l~~~~~~~~~~v~r~~~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~l 305 (656)
T PRK12898 226 ESLHGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIEL 305 (656)
T ss_pred hhhccccCchhhhcccccceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEE
Confidence 12356889999999986421 11122222222221110000
Q ss_pred -----------c---C-Ccccc------ccccccchhhhh--------------------ccccccC-------------
Q 010196 233 -----------F---S-DASTF------LPSAFGSLKTIR--------------------RCGVERG------------- 258 (515)
Q Consensus 233 -----------~---~-~~~~~------~~~~~~~~~~~~--------------------~~~~~~~------------- 258 (515)
+ . .+... ...++.....+. +....+.
T Consensus 306 t~~g~~~~e~~~~~l~~~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE 385 (656)
T PRK12898 306 TEAGRARIAELAESLPPAWRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKE 385 (656)
T ss_pred cHHHHHHHHHHhCcchhhcccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhc
Confidence 0 0 00000 000000000000 0000000
Q ss_pred ------------------CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcH
Q 010196 259 ------------------FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKP 320 (515)
Q Consensus 259 ------------------~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~ 320 (515)
|... | .....||+|......++...+..++..+...... .....+..+.+....|.
T Consensus 386 ~v~i~~e~~t~a~It~q~~Fr~-Y--~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~ 459 (656)
T PRK12898 386 GCELTDPRETLARITYQRFFRR-Y--LRLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKW 459 (656)
T ss_pred CCCCCcCceeeeeehHHHHHHh-h--HHHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHH
Confidence 0000 0 1356899999877667777776777666554322 11233444556667788
Q ss_pred HHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcccc
Q 010196 321 LYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (515)
Q Consensus 321 ~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~G 398 (515)
..+..++... .+.++||||+|+..++.+++.|...+ +++..+||++++ |+..+..|..+...|+|||++++||
T Consensus 460 ~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~g---i~~~~Lhg~~~~--rE~~ii~~ag~~g~VlVATdmAgRG 534 (656)
T PRK12898 460 AAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAG---LPHQVLNAKQDA--EEAAIVARAGQRGRITVATNMAGRG 534 (656)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCC---CCEEEeeCCcHH--HHHHHHHHcCCCCcEEEEccchhcc
Confidence 8888888754 36789999999999999999999876 899999998654 5555566666666899999999999
Q ss_pred CCCC---CCC-----EEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 399 MDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 399 iDi~---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
+||+ ++. +||+++.|.|.+.|.||+||+||.|.+|.+++|++.+|
T Consensus 535 tDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 535 TDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred cCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEEechhH
Confidence 9999 665 99999999999999999999999999999999999876
No 62
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=9.2e-38 Score=326.76 Aligned_cols=306 Identities=21% Similarity=0.250 Sum_probs=222.2
Q ss_pred HHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH-hccccCcEEEEeecC
Q 010196 60 QETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQ 138 (515)
Q Consensus 60 ~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~v~~~~g~ 138 (515)
++++..+..+++++++||||||||.+|.+++++.... ..+++++.|||++|.|+++.+.+ +....+..|+..+++
T Consensus 11 ~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~----~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~ 86 (812)
T PRK11664 11 PELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI----NGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRA 86 (812)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc----CCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecC
Confidence 3344444568899999999999999999998875422 24899999999999999999864 445556777777665
Q ss_pred CchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH-HHHHHHH-h
Q 010196 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-LLREAYQ-A 216 (515)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~-l~~~~~~-~ 216 (515)
.+. ......|+|+||++|++++... ..++++++||+||+|. .++..+. .
T Consensus 87 ~~~---------------------------~~~~t~I~v~T~G~Llr~l~~d--~~L~~v~~IIlDEaHER~l~~Dl~L~ 137 (812)
T PRK11664 87 ESK---------------------------VGPNTRLEVVTEGILTRMIQRD--PELSGVGLVILDEFHERSLQADLALA 137 (812)
T ss_pred ccc---------------------------cCCCCcEEEEChhHHHHHHhhC--CCcCcCcEEEEcCCCccccccchHHH
Confidence 431 1133589999999999988763 4588999999999996 3332221 1
Q ss_pred HHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEee
Q 010196 217 WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (515)
Q Consensus 217 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (515)
.+..+...+. +..++++||||++.. .+. .++.++..+..
T Consensus 138 ll~~i~~~lr--------------------------------------~~lqlilmSATl~~~--~l~-~~~~~~~~I~~ 176 (812)
T PRK11664 138 LLLDVQQGLR--------------------------------------DDLKLLIMSATLDND--RLQ-QLLPDAPVIVS 176 (812)
T ss_pred HHHHHHHhCC--------------------------------------ccceEEEEecCCCHH--HHH-HhcCCCCEEEe
Confidence 2222222211 234889999999643 233 33333333332
Q ss_pred CCccccCCcccceeEEeccCCCcHH-----HHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCH
Q 010196 297 GETRYKLPERLESYKLICESKLKPL-----YLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQ 371 (515)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~k~~-----~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~ 371 (515)
....+ .+++++.......+.. .+..++.. ..+.+|||+++..+++.+++.|......++.+..+||++++
T Consensus 177 ~gr~~----pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~ 251 (812)
T PRK11664 177 EGRSF----PVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSL 251 (812)
T ss_pred cCccc----cceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCH
Confidence 22211 2344444443333332 23333332 46889999999999999999998632245889999999999
Q ss_pred HHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCC------------------hhhhHHhhhhcccCCCCc
Q 010196 372 SVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------------IKTYIHRAGRTARAGQLG 433 (515)
Q Consensus 372 ~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s------------------~~~~~Qr~GR~gR~g~~g 433 (515)
.+|..+++.|++|+.+|||||+++++|||+|+|++||+++++.. -.+|.||.||+||. .+|
T Consensus 252 ~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G 330 (812)
T PRK11664 252 AEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL-EPG 330 (812)
T ss_pred HHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC-CCc
Confidence 99999999999999999999999999999999999999887643 24799999999999 699
Q ss_pred cEEEEeechhHH
Q 010196 434 RCFTLLHKDEVK 445 (515)
Q Consensus 434 ~~~~~~~~~d~~ 445 (515)
.||.++++.+..
T Consensus 331 ~cyrL~t~~~~~ 342 (812)
T PRK11664 331 ICLHLYSKEQAE 342 (812)
T ss_pred EEEEecCHHHHh
Confidence 999999988754
No 63
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=2.2e-37 Score=312.83 Aligned_cols=307 Identities=18% Similarity=0.176 Sum_probs=211.2
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..|+++|.+|+..++. +.+.++++|||+|||+++...+ ..+... ...++||++||++|+.||.+.+++++...
T Consensus 113 ~~~r~~Q~~av~~~l~----~~~~il~apTGsGKT~i~~~l~-~~~~~~--~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 113 IEPHWYQYDAVYEGLK----NNRRLLNLPTSAGKSLIQYLLS-RYYLEN--YEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCCHHHHHHHHHHHh----cCceEEEeCCCCCHHHHHHHHH-HHHHhc--CCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 4799999999887754 7789999999999999865433 222221 23379999999999999999999986433
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
...+..+.++.... ...+|+|+||+++.+.... .+.++++||+||||+
T Consensus 186 ~~~~~~i~~g~~~~----------------------------~~~~I~VaT~qsl~~~~~~----~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 186 REAMHKIYSGTAKD----------------------------TDAPIVVSTWQSAVKQPKE----WFDQFGMVIVDECHL 233 (501)
T ss_pred ccceeEEecCcccC----------------------------CCCCEEEeeHHHHhhchhh----hccccCEEEEEchhc
Confidence 34444455543211 2358999999998764322 356899999999999
Q ss_pred HHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhh-cc
Q 010196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LD 287 (515)
Q Consensus 209 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~ 287 (515)
+.+..+. .++..++.. .+.+++|||+......... ..
T Consensus 234 ~~~~~~~----~il~~~~~~--------------------------------------~~~lGLTATp~~~~~~~~~~~~ 271 (501)
T PHA02558 234 FTGKSLT----SIITKLDNC--------------------------------------KFKFGLTGSLRDGKANILQYVG 271 (501)
T ss_pred ccchhHH----HHHHhhhcc--------------------------------------ceEEEEeccCCCccccHHHHHH
Confidence 8765443 333332211 1579999998643321111 11
Q ss_pred cCCCeeEeeCCcc---------------------ccCCc----cc-ceeEEeccCCCcHHHHHHHHHhc--CCCeEEEEc
Q 010196 288 LHHPLFLTTGETR---------------------YKLPE----RL-ESYKLICESKLKPLYLVALLQSL--GEEKCIVFT 339 (515)
Q Consensus 288 ~~~~~~~~~~~~~---------------------~~~~~----~~-~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~ 339 (515)
+..|......... ..... .. ..+....+...+...+..+.... .+.+++|||
T Consensus 272 ~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~ 351 (501)
T PHA02558 272 LFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMF 351 (501)
T ss_pred hhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence 1122222111000 00000 00 00001112222333444443322 357899999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEec-CCccccCCCCCCCEEEEccCCCChhh
Q 010196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (515)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T-~~~~~GiDi~~v~~VI~~~~p~s~~~ 418 (515)
+++++++.+++.|+..+ ..+..+||+++.++|..+++.|++|+..+|||| +++++|+|+|++++||+++++.|...
T Consensus 352 ~~~~h~~~L~~~L~~~g---~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~ 428 (501)
T PHA02558 352 KYVEHGKPLYEMLKKVY---DKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKII 428 (501)
T ss_pred EEHHHHHHHHHHHHHcC---CCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhh
Confidence 99999999999999866 789999999999999999999999999999998 89999999999999999999999999
Q ss_pred hHHhhhhcccCCCCccEEEEe
Q 010196 419 YIHRAGRTARAGQLGRCFTLL 439 (515)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~ 439 (515)
|+||+||++|.+..+....++
T Consensus 429 ~~QriGR~~R~~~~K~~~~i~ 449 (501)
T PHA02558 429 VLQSIGRVLRKHGSKSIATVW 449 (501)
T ss_pred hhhhhhccccCCCCCceEEEE
Confidence 999999999987654333333
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=1.6e-37 Score=320.75 Aligned_cols=336 Identities=25% Similarity=0.301 Sum_probs=249.2
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+.++..++.++++.|+.++...+ ..++|+++++|||||||+.+++.++..+.++ +.+++|+||+++||
T Consensus 16 ~~~~v~~i~~~~~~~el~~~qq~av~~~~---~~~~N~li~aPTgsGKTlIA~lai~~~l~~~---~~k~vYivPlkALa 89 (766)
T COG1204 16 LDDRVLEILKGDGIDELFNPQQEAVEKGL---LSDENVLISAPTGSGKTLIALLAILSTLLEG---GGKVVYIVPLKALA 89 (766)
T ss_pred ccHHHHHHhccCChHHhhHHHHHHhhccc---cCCCcEEEEcCCCCchHHHHHHHHHHHHHhc---CCcEEEEeChHHHH
Confidence 78899999999999999999999976554 3489999999999999999999999999875 45899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.+.+++++ ....+|++|...+|+....... ..+++|+|+||+++-.++++... .
T Consensus 90 ~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~~------------------------l~~~~ViVtT~EK~Dsl~R~~~~-~ 143 (766)
T COG1204 90 EEKYEEFS-RLEELGIRVGISTGDYDLDDER------------------------LARYDVIVTTPEKLDSLTRKRPS-W 143 (766)
T ss_pred HHHHHHhh-hHHhcCCEEEEecCCcccchhh------------------------hccCCEEEEchHHhhHhhhcCcc-h
Confidence 99999999 4455699999999998754421 24579999999999877777443 5
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+..+++||+||+|.+.+...+..++.+........ +..+++.+||
T Consensus 144 ~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~-----------------------------------~~~rivgLSA 188 (766)
T COG1204 144 IEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN-----------------------------------ELIRIVGLSA 188 (766)
T ss_pred hhcccEEEEeeeeecCCcccCceehhHHHHHHhhC-----------------------------------cceEEEEEee
Confidence 77899999999998877778888888887665332 2248899999
Q ss_pred EecCCchhhhhcccCCCeeE--eeCCccccCCcccceeEEeccC-----CCcHHHHHHHHHhc-CCCeEEEEcCChhhHH
Q 010196 275 TLTQDPNKLAQLDLHHPLFL--TTGETRYKLPERLESYKLICES-----KLKPLYLVALLQSL-GEEKCIVFTSSVESTH 346 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~ 346 (515)
|++ +..+++.+.-..+... .+..-....+.....+...... ......+...+... .++++||||+|++.+.
T Consensus 189 Tlp-N~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~ 267 (766)
T COG1204 189 TLP-NAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAE 267 (766)
T ss_pred ecC-CHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEEEecCchHH
Confidence 996 4455554433333211 1111111111111111111111 11122223333333 4779999999999999
Q ss_pred HHHHHHhhc----C-------------C-----------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEec
Q 010196 347 RLCTLLNHF----G-------------E-----------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (515)
Q Consensus 347 ~l~~~L~~~----~-------------~-----------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T 392 (515)
..++.|... . . ....+.++|++++.++|..+.+.|+.|.++|||||
T Consensus 268 ~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 268 KTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred HHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 999988731 0 0 11368899999999999999999999999999999
Q ss_pred CCccccCCCCCCCEEEE-----cc-----CCCChhhhHHhhhhcccCCCC--ccEEEEe
Q 010196 393 DAMTRGMDVEGVNNVVN-----YD-----KPAYIKTYIHRAGRTARAGQL--GRCFTLL 439 (515)
Q Consensus 393 ~~~~~GiDi~~v~~VI~-----~~-----~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~ 439 (515)
++++.|+|+|. +.||+ |+ .+-+.-+++|++|||||-|-+ |.++++.
T Consensus 348 pTLA~GVNLPA-~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 348 PTLAAGVNLPA-RTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred hHHhhhcCCcc-eEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 99999999995 55554 44 344577899999999998866 7777777
No 65
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=1.9e-36 Score=327.18 Aligned_cols=318 Identities=20% Similarity=0.275 Sum_probs=213.4
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 37 ~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
.++.+.+.+....+|+++|..+++.++ .|+|++++||||+|||. |.+|+...+.. .+.+++|++||++|+.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il----~G~d~vi~ApTGsGKT~-f~l~~~~~l~~---~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVL----RGDSFAIIAPTGVGKTT-FGLAMSLFLAK---KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHh----CCCeEEEECCCCCCHHH-HHHHHHHHHHh---cCCeEEEEeCHHHHHHH
Confidence 345555555444489999999987765 49999999999999997 66677666543 25689999999999999
Q ss_pred HHHHHHHhccccCcEE---EEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcC
Q 010196 117 VKDVFAAIAPAVGLSV---GLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 117 ~~~~~~~~~~~~~~~v---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+++.+++++...++.+ +.++|+.+..++... +..+. ++++|+|+||++|.+++...
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~------------------~~~l~~~~~dIlV~Tp~rL~~~~~~l-- 196 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEF------------------MERIENGDFDILITTTMFLSKNYDEL-- 196 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHH------------------HHHHhcCCCCEEEECHHHHHHHHHHh--
Confidence 9999999988766554 356788776654221 12233 35899999999999887652
Q ss_pred CCCCcceEEEEcchhHHHHH-----------HHHh-HHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCC
Q 010196 193 FTLEHLCYLVVDETDRLLRE-----------AYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~-----------~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (515)
.. +++++|+||||+|++. +|.+ .++.++........ ......+...... ..
T Consensus 197 -~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~----------~~~~~~~~~~~~~-----~~ 259 (1171)
T TIGR01054 197 -GP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLK----------LYRALHAKKRLEL-----LE 259 (1171)
T ss_pred -cC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccc----------cchHHHHHHHHHH-----HH
Confidence 12 7999999999999883 4443 24444433221000 0000000000000 00
Q ss_pred CCCC-CceeeEEEEEEe-cCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEE
Q 010196 261 DKPY-PRLVKMVLSATL-TQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVF 338 (515)
Q Consensus 261 ~~~~-~~~~~i~~SaT~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf 338 (515)
..+. ...+.+++|||. +...... .+.++..+..+..... ...+.+.+..... +...+..++... +.++|||
T Consensus 260 ~~~~~~q~~li~~SAT~~p~~~~~~---l~r~ll~~~v~~~~~~-~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVF 332 (1171)
T TIGR01054 260 AIPGKKRGCLIVSSATGRPRGKRAK---LFRELLGFEVGGGSDT-LRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVY 332 (1171)
T ss_pred hhhhccCcEEEEEeCCCCccccHHH---HcccccceEecCcccc-ccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEE
Confidence 0000 111356789994 4333221 1233333444333222 2334444443322 245667777665 4689999
Q ss_pred cCCh---hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEe----cCCccccCCCCC-CCEEEEc
Q 010196 339 TSSV---ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNY 410 (515)
Q Consensus 339 ~~s~---~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~----T~~~~~GiDi~~-v~~VI~~ 410 (515)
|+++ +.++.+++.|...+ +++..+||++++ ..++.|++|+++|||| |++++||||+|+ +++||+|
T Consensus 333 v~t~~~~~~a~~l~~~L~~~g---~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~~vI~~ 405 (1171)
T TIGR01054 333 VSIDYGKEKAEEIAEFLENHG---VKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVRYAVFL 405 (1171)
T ss_pred EeccccHHHHHHHHHHHHhCC---ceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCCccccEEEEE
Confidence 9999 99999999998766 899999999973 7899999999999999 599999999999 8999998
Q ss_pred cCC
Q 010196 411 DKP 413 (515)
Q Consensus 411 ~~p 413 (515)
|+|
T Consensus 406 ~~P 408 (1171)
T TIGR01054 406 GVP 408 (1171)
T ss_pred CCC
Confidence 877
No 66
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=2.1e-37 Score=303.34 Aligned_cols=315 Identities=18% Similarity=0.168 Sum_probs=209.0
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhc
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (515)
++++.||||||||.+|++|++..+... ...+++|++|+++|+.|+++.++.++.. .++..+|........ .
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~--~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~----~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ--KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIK----E 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC--CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHh----c
Confidence 589999999999999999999887553 3458999999999999999999997532 455555554321100 0
Q ss_pred cCcccccccCCchhHHHh------hccCCcEEEeCChHHHHHHhcC-cC--CCCC--cceEEEEcchhHHHHHHHHhHHH
Q 010196 151 RPKLEAGICYDPEDVLQE------LQSAVDILVATPGRLMDHINAT-RG--FTLE--HLCYLVVDETDRLLREAYQAWLP 219 (515)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~------l~~~~~Ivv~Tp~~l~~~l~~~-~~--~~~~--~~~~vViDEah~l~~~~~~~~~~ 219 (515)
..... . ....+.. .....+|+|+||++++..+... .. ..+. ..++||+||||.+.+.++.. +.
T Consensus 72 ~~~~~---~--~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~ 145 (358)
T TIGR01587 72 MGDSE---E--FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-IL 145 (358)
T ss_pred cCCch---h--HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HH
Confidence 00000 0 0000000 1123589999999998877652 11 1111 23789999999998765544 44
Q ss_pred HHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCc
Q 010196 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (515)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
.++..+.. ...+++++|||++.....+.......+........
T Consensus 146 ~~l~~l~~-------------------------------------~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~ 188 (358)
T TIGR01587 146 AVLEVLKD-------------------------------------NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK 188 (358)
T ss_pred HHHHHHHH-------------------------------------cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc
Confidence 44443321 12378999999985554443332221111111100
Q ss_pred cccCCcccceeE-E-eccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHH
Q 010196 300 RYKLPERLESYK-L-ICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSK 376 (515)
Q Consensus 300 ~~~~~~~~~~~~-~-~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~ 376 (515)
.......+.. . ......+...+..++... .++++||||+++++++.+++.|.+.+ .+..+..+||++++.+|.+
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~-~~~~~~~~h~~~~~~~r~~ 265 (358)
T TIGR01587 189 --EERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENA-PEEEIMLLHSRFTEKDRAK 265 (358)
T ss_pred --cccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhc-CCCeEEEEECCCCHHHHHH
Confidence 0000011111 1 112234555666666543 46899999999999999999998765 2246899999999999976
Q ss_pred ----HHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC----ccEEEEeechh
Q 010196 377 ----TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHKDE 443 (515)
Q Consensus 377 ----~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----g~~~~~~~~~d 443 (515)
+++.|++|+.++||||+++++|+|++ +++||++..| ..+|+||+||+||.|+. |.+++|....+
T Consensus 266 ~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~ 337 (358)
T TIGR01587 266 KEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRYGRKNGENFEVYIITIAPE 337 (358)
T ss_pred HHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCCCCCCCCCCeEEEEeecCC
Confidence 48999999999999999999999996 8899988776 78999999999998865 36677665443
No 67
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=4.6e-36 Score=307.17 Aligned_cols=357 Identities=18% Similarity=0.217 Sum_probs=235.8
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|+++|..+...+ ..|+ ++++.||+|||+++++|++..... +..++|++||++||.|.++++..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l----~~G~--Iaem~TGeGKTL~a~lp~~l~al~----G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVL----HEGN--IAEMQTGEGKTLTATMPLYLNALE----GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHH----cCCc--eeeecCCCcchHHHHHHHHHHHHc----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 576 7999998876543 2344 999999999999999999866554 3489999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+|++++++.|+.+...... ....++|+++||++| .+++...- ......+.
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~----------------------~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~ 201 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKK----------------------AIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLN 201 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHH----------------------HhcCCCEEEECCccccchhHHhccccchhhhcccccc
Confidence 999999999999987322211 123479999999999 55554321 12457889
Q ss_pred EEEEcchhHHHHH----------------HHHhHHHHHHhhcccCcccc---------cCCcc-----cc--cccccc--
Q 010196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNENR---------FSDAS-----TF--LPSAFG-- 245 (515)
Q Consensus 200 ~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~~~~~---------~~~~~-----~~--~~~~~~-- 245 (515)
++|+||||+|+=+ ........+...+.....-. +++.. .+ .+..+.
T Consensus 202 ~~IvDEaDsiLiDea~tpliisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~ 281 (790)
T PRK09200 202 YAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLE 281 (790)
T ss_pred eEEEeccccceeccCCCceeeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChh
Confidence 9999999997522 12222223333222110000 00000 00 000000
Q ss_pred ----------chhh--h-h--------------------ccccccCCC--------------CCCC--------------
Q 010196 246 ----------SLKT--I-R--------------------RCGVERGFK--------------DKPY-------------- 264 (515)
Q Consensus 246 ----------~~~~--~-~--------------------~~~~~~~~~--------------~~~~-------------- 264 (515)
.+.. + . +....+.+. -.+.
T Consensus 282 ~~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr 361 (790)
T PRK09200 282 HQVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFR 361 (790)
T ss_pred hhHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHH
Confidence 0000 0 0 000000000 0000
Q ss_pred CceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCCh
Q 010196 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (515)
Q Consensus 265 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (515)
--....+||+|......++...+-.+.+.+.+ ..+.... -..-.+......|...+...+.. ..+.++||||+|+
T Consensus 362 ~Y~kl~GmTGTa~t~~~e~~~~Y~l~v~~IPt--~kp~~r~-d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~ 438 (790)
T PRK09200 362 MFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT--NRPIIRI-DYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSI 438 (790)
T ss_pred HhHHHhccCCCChHHHHHHHHHhCCcEEECCC--CCCcccc-cCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcH
Confidence 00014456666543333333322222222211 1111111 11223344556788888888765 3678999999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCC---CCCC-----EEEEccCCC
Q 010196 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDV---EGVN-----NVVNYDKPA 414 (515)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi---~~v~-----~VI~~~~p~ 414 (515)
..++.++..|...+ +++..+||++.+.++..+...++.| +|+|||++++||+|+ |++. +||++++|.
T Consensus 439 ~~se~l~~~L~~~g---i~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~ 513 (790)
T PRK09200 439 EQSETFSKLLDEAG---IPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME 513 (790)
T ss_pred HHHHHHHHHHHHCC---CCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEEEeccCCC
Confidence 99999999999876 8999999999998888888777766 799999999999999 6898 999999999
Q ss_pred ChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
+.+.|+||+||+||.|.+|.+++|++.+|
T Consensus 514 s~r~y~qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 514 SRRVDLQLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred CHHHHHHhhccccCCCCCeeEEEEEcchH
Confidence 99999999999999999999999999776
No 68
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=100.00 E-value=3.3e-37 Score=320.13 Aligned_cols=338 Identities=22% Similarity=0.319 Sum_probs=257.9
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH
Q 010196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (515)
Q Consensus 40 ~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (515)
.-....||...++|.|.+|+..+ +.|+|+++.+|||.||+++|.+|++ .-++.+|||.|..+|++.+..
T Consensus 254 ~~l~~~Fg~~~FR~~Q~eaI~~~----l~Gkd~fvlmpTG~GKSLCYQlPA~-------l~~gitvVISPL~SLm~DQv~ 322 (941)
T KOG0351|consen 254 LLLKEVFGHKGFRPNQLEAINAT----LSGKDCFVLMPTGGGKSLCYQLPAL-------LLGGVTVVISPLISLMQDQVT 322 (941)
T ss_pred HHHHHHhccccCChhHHHHHHHH----HcCCceEEEeecCCceeeEeecccc-------ccCCceEEeccHHHHHHHHHH
Confidence 33334589999999999998755 4599999999999999999999988 233479999999999987777
Q ss_pred HHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc---CCcEEEeCChHHHHHHhcCc-CCCC
Q 010196 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS---AVDILVATPGRLMDHINATR-GFTL 195 (515)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~Ivv~Tp~~l~~~l~~~~-~~~~ 195 (515)
.+... ++....+.++....++..- ++.+.. ..+|++.||+++...-.-.. ...+
T Consensus 323 ~L~~~----~I~a~~L~s~q~~~~~~~i------------------~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L 380 (941)
T KOG0351|consen 323 HLSKK----GIPACFLSSIQTAAERLAI------------------LQKLANGNPIIKILYVTPEKVVASEGLLESLADL 380 (941)
T ss_pred hhhhc----CcceeeccccccHHHHHHH------------------HHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhc
Confidence 66443 7888888888876655332 233333 37899999998754221110 0122
Q ss_pred Cc---ceEEEEcchhHHHHHHH--HhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 196 EH---LCYLVVDETDRLLREAY--QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 196 ~~---~~~vViDEah~l~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
.. +.++||||||+...+++ ......+..... -++.++++
T Consensus 381 ~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~------------------------------------~~~~vP~i 424 (941)
T KOG0351|consen 381 YARGLLALFVIDEAHCVSQWGHDFRPSYKRLGLLRI------------------------------------RFPGVPFI 424 (941)
T ss_pred cCCCeeEEEEecHHHHhhhhcccccHHHHHHHHHHh------------------------------------hCCCCCeE
Confidence 23 78999999999876653 222222211111 12335889
Q ss_pred EEEEEecCCchh--hhhcccCCCeeEeeCCccccCCcccceeEEeccC-CCcHHHHHH-HHHhcCCCeEEEEcCChhhHH
Q 010196 271 VLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICES-KLKPLYLVA-LLQSLGEEKCIVFTSSVESTH 346 (515)
Q Consensus 271 ~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~k~~~l~~-~l~~~~~~~~lVf~~s~~~~~ 346 (515)
.+|||.+..+.. +..+.+.+|.++.....+.++ .+.+.... ......+.. .-...+...+||||.++..|+
T Consensus 425 ALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL-----~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 425 ALTATATERVREDVIRSLGLRNPELFKSSFNRPNL-----KYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred EeehhccHHHHHHHHHHhCCCCcceecccCCCCCc-----eEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHH
Confidence 999999877655 445667788877666555433 22233332 222222333 333456789999999999999
Q ss_pred HHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhc
Q 010196 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (515)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (515)
.+...|+..+ .....||++|+..+|..+...|..++++|+|||-++++|||.|+|+.||||.+|+|.+.|+|-+|||
T Consensus 500 ~vs~~L~~~~---~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRA 576 (941)
T KOG0351|consen 500 QVSAVLRSLG---KSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRA 576 (941)
T ss_pred HHHHHHHHhc---hhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhcccc
Confidence 9999999877 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccEEEEeechhHHHHHHHHHHh
Q 010196 427 ARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (515)
Q Consensus 427 gR~g~~g~~~~~~~~~d~~~~~~~~~~~ 454 (515)
||+|....|++|+...|...++.++...
T Consensus 577 GRDG~~s~C~l~y~~~D~~~l~~ll~s~ 604 (941)
T KOG0351|consen 577 GRDGLPSSCVLLYGYADISELRRLLTSG 604 (941)
T ss_pred CcCCCcceeEEecchhHHHHHHHHHHcc
Confidence 9999999999999999999999888875
No 69
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=7.3e-36 Score=302.66 Aligned_cols=355 Identities=18% Similarity=0.194 Sum_probs=227.2
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCc
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 130 (515)
++|+|.+++..+. .++..+++++||+|||++|++|++.....+ ..++|++|+++||.|+++++..+...+|+
T Consensus 69 lrpydVQlig~l~----l~~G~Iaem~TGeGKTLta~Lpa~l~aL~g----~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIV----LHQGNIAEMKTGEGKTLTATMPLYLNALTG----KGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCccHHHHHHHHH----hcCCceeEecCCcchHHHHHHHHHHHhhcC----CceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 4555555544332 244579999999999999999987666543 36999999999999999999999999999
Q ss_pred EEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcC-----cCCCCCcceEEEEc
Q 010196 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHLCYLVVD 204 (515)
Q Consensus 131 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~-----~~~~~~~~~~vViD 204 (515)
++++++++....+.. ... +....+++|+++||++| .+++... ....+..+.++|+|
T Consensus 141 sv~~~~~~s~~~~~~-----------------~~~-rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVD 202 (762)
T TIGR03714 141 TVSLGVVDDPDEEYD-----------------ANE-KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVD 202 (762)
T ss_pred cEEEEECCCCccccC-----------------HHH-HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEe
Confidence 999887763211000 000 11124689999999999 5555321 12346789999999
Q ss_pred chhHHHHHH----------------HHhHHHHHHhhcccCccc---------ccCCcc-----cc--cccccc-------
Q 010196 205 ETDRLLREA----------------YQAWLPTVLQLTRSDNEN---------RFSDAS-----TF--LPSAFG------- 245 (515)
Q Consensus 205 Eah~l~~~~----------------~~~~~~~i~~~~~~~~~~---------~~~~~~-----~~--~~~~~~------- 245 (515)
|||+|+-+. .......+...+.....- .+++.. .+ .+..+.
T Consensus 203 EaDsILiDeartpliisg~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~ 282 (762)
T TIGR03714 203 EVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELV 282 (762)
T ss_pred cHhhHhhccCcCCeeeeCCCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHH
Confidence 999986431 122222233322221000 000000 00 000000
Q ss_pred -----ch---hhhh--------------------ccccccC-------------------------------CCCCCCCc
Q 010196 246 -----SL---KTIR--------------------RCGVERG-------------------------------FKDKPYPR 266 (515)
Q Consensus 246 -----~~---~~~~--------------------~~~~~~~-------------------------------~~~~~~~~ 266 (515)
.+ .... +....+. |...+
T Consensus 283 ~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y--- 359 (762)
T TIGR03714 283 RHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMF--- 359 (762)
T ss_pred HHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhC---
Confidence 00 0000 0000000 00000
Q ss_pred eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChhh
Q 010196 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVES 344 (515)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~ 344 (515)
....+||+|......++...+-.+.+.+++. .+.. ..-..-.+......|...+...+.. ..+.++||||+|+..
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY~l~v~~IPt~--kp~~-r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~ 436 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETYSLSVVKIPTN--KPII-RIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEM 436 (762)
T ss_pred chhcccCCCChhHHHHHHHHhCCCEEEcCCC--CCee-eeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHH
Confidence 1244566665443344433222222222211 1111 1111223445566788888887765 457899999999999
Q ss_pred HHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCC---------CCCEEEEccCCCC
Q 010196 345 THRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---------GVNNVVNYDKPAY 415 (515)
Q Consensus 345 ~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~---------~v~~VI~~~~p~s 415 (515)
++.+...|...+ +++..+||++.+.++..+..+++.| .|+|||++++||+|++ ++++|+++++|..
T Consensus 437 se~ls~~L~~~g---i~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~ 511 (762)
T TIGR03714 437 SEIYSELLLREG---IPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENS 511 (762)
T ss_pred HHHHHHHHHHCC---CCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeEEEEecCCCCc
Confidence 999999999876 8899999999998888887777666 7999999999999999 8999999999987
Q ss_pred hhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 416 IKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 416 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
... .||+||+||.|.+|.+++|++.+|
T Consensus 512 rid-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 512 RVD-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred HHH-HHhhhcccCCCCceeEEEEEccch
Confidence 655 999999999999999999999876
No 70
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=5.3e-36 Score=313.87 Aligned_cols=346 Identities=25% Similarity=0.328 Sum_probs=258.0
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
....+..++...|...|+++|.+|+..+. +|+|++|..|||||||.+|++|+++.+.+.+.. ++|+|.||++|+
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~----~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a--~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIR----EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA--RALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHH----CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc--cEEEEechhhhH
Confidence 44556888888899999999999988775 489999999999999999999999999986533 899999999999
Q ss_pred HHHHHHHHHhccccC--cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 115 LQVKDVFAAIAPAVG--LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~--~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+++.+.++++...++ +.+...+|++...+.. ....++|+|+++||++|..++.+...
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~---------------------~~~~~pp~IllTNpdMLh~~llr~~~ 187 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERR---------------------AIIRNPPDILLTNPDMLHYLLLRNHD 187 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHH---------------------HHHhCCCCEEEeCHHHHHHHhccCcc
Confidence 999999999988776 7888889988766552 22457789999999999885554332
Q ss_pred ---CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceee
Q 010196 193 ---FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (515)
Q Consensus 193 ---~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (515)
+.++++++||+||+|. ....++..+..+++.+..... ......|+
T Consensus 188 ~~~~~~~~Lk~lVvDElHt-YrGv~GS~vA~llRRL~~~~~-------------------------------~~~~~~q~ 235 (851)
T COG1205 188 AWLWLLRNLKYLVVDELHT-YRGVQGSEVALLLRRLLRRLR-------------------------------RYGSPLQI 235 (851)
T ss_pred hHHHHHhcCcEEEEeccee-ccccchhHHHHHHHHHHHHHh-------------------------------ccCCCceE
Confidence 2456799999999996 466677777666665432111 00123488
Q ss_pred EEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEecc---------CCCcHHHHHHHHHhc--CCCeEEEE
Q 010196 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE---------SKLKPLYLVALLQSL--GEEKCIVF 338 (515)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~l~~~--~~~~~lVf 338 (515)
++.|||+.+.. +.................. .+.....+..... ...+...+..+.... ++-++|+|
T Consensus 236 i~~SAT~~np~-e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F 312 (851)
T COG1205 236 ICTSATLANPG-EFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVF 312 (851)
T ss_pred EEEeccccChH-HHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEE
Confidence 99999996544 3333333333333221111 1122222221111 112333333333322 57799999
Q ss_pred cCChhhHHHHH----HHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC
Q 010196 339 TSSVESTHRLC----TLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (515)
Q Consensus 339 ~~s~~~~~~l~----~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p 413 (515)
+.++..++.+. ..+...+ .....+..+++++...+|..+...|++|+..++++|++++-|+|+.+++.||.+..|
T Consensus 313 ~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P 392 (851)
T COG1205 313 FRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYP 392 (851)
T ss_pred EehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCC
Confidence 99999999997 3333322 344678999999999999999999999999999999999999999999999999999
Q ss_pred C-ChhhhHHhhhhcccCCCCccEEEEeech
Q 010196 414 A-YIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (515)
Q Consensus 414 ~-s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (515)
. +..++.||.||+||.++.+..+++...+
T Consensus 393 ~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~ 422 (851)
T COG1205 393 GVSVLSFRQRAGRAGRRGQESLVLVVLRSD 422 (851)
T ss_pred CchHHHHHHhhhhccCCCCCceEEEEeCCC
Confidence 9 8999999999999999777777776633
No 71
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=9.8e-35 Score=292.51 Aligned_cols=353 Identities=19% Similarity=0.185 Sum_probs=233.9
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|++.|.-+...+ .++.+.+++||+|||++|.+|++-....+ ..+.|++||+.||.|.++++.++.
T Consensus 53 lg~-~p~~vQlig~~~l------~~G~Iaem~TGeGKTLva~lpa~l~aL~G----~~V~VvTpt~~LA~qdae~~~~l~ 121 (745)
T TIGR00963 53 LGM-RPFDVQLIGGIAL------HKGKIAEMKTGEGKTLTATLPAYLNALTG----KGVHVVTVNDYLAQRDAEWMGQVY 121 (745)
T ss_pred hCC-CccchHHhhhhhh------cCCceeeecCCCccHHHHHHHHHHHHHhC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 576 6888887774432 33449999999999999999996433332 269999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+|+++++++|+.+...+... ..++|+++||++| .++++... .+.+..+.
T Consensus 122 ~~LGLsv~~i~g~~~~~~r~~~-----------------------y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~ 178 (745)
T TIGR00963 122 RFLGLSVGLILSGMSPEERREA-----------------------YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFH 178 (745)
T ss_pred ccCCCeEEEEeCCCCHHHHHHh-----------------------cCCCEEEECCCchhhHHHhcccccchhhhhccccc
Confidence 9999999999999876544221 2369999999999 88887642 23567899
Q ss_pred EEEEcchhHHHHHHHHh----------------HHHHHHhhcccCccc---------ccCCcc-----cc--ccccccc-
Q 010196 200 YLVVDETDRLLREAYQA----------------WLPTVLQLTRSDNEN---------RFSDAS-----TF--LPSAFGS- 246 (515)
Q Consensus 200 ~vViDEah~l~~~~~~~----------------~~~~i~~~~~~~~~~---------~~~~~~-----~~--~~~~~~~- 246 (515)
++|+||+|+|+-+.-.. ....+.+.+.....- .+++.. .+ ....+..
T Consensus 179 ~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~ 258 (745)
T TIGR00963 179 FAIIDEVDSILIDEARTPLIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLE 258 (745)
T ss_pred eeEeecHHHHhHHhhhhHHhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChh
Confidence 99999999986532110 011111111100000 000000 00 0000000
Q ss_pred -----------hh---hhh--------------------ccccccC-------------------------------CCC
Q 010196 247 -----------LK---TIR--------------------RCGVERG-------------------------------FKD 261 (515)
Q Consensus 247 -----------~~---~~~--------------------~~~~~~~-------------------------------~~~ 261 (515)
+. .+. +....+. |..
T Consensus 259 ~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr 338 (745)
T TIGR00963 259 NSPLIHYINNALKAKELFEKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFR 338 (745)
T ss_pred hhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHh
Confidence 00 000 0000000 000
Q ss_pred CCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHH--hcCCCeEEEEc
Q 010196 262 KPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFT 339 (515)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lVf~ 339 (515)
.+ + ...+||+|......++...+-.+.+.+.+.... . ..-..-.+......|...+.+.+. ...+.++||||
T Consensus 339 ~Y-~--kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~--~-R~d~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t 412 (745)
T TIGR00963 339 LY-E--KLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPV--I-RKDLSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGT 412 (745)
T ss_pred hC-c--hhhccCCCcHHHHHHHHHHhCCCEEEeCCCCCe--e-eeeCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 00 0 134555555433333333332222222221110 0 001111223334456666666553 34688999999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCC-------CCEEEEccC
Q 010196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG-------VNNVVNYDK 412 (515)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~-------v~~VI~~~~ 412 (515)
+|+..++.+++.|...+ ++...+|++ +.+|+..+..|..+...|+|||++++||+|++. ..+||+++.
T Consensus 413 ~si~~se~ls~~L~~~g---i~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~ 487 (745)
T TIGR00963 413 TSVEKSELLSNLLKERG---IPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTER 487 (745)
T ss_pred CcHHHHHHHHHHHHHcC---CCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCC
Confidence 99999999999999876 888999998 788999999999999999999999999999998 459999999
Q ss_pred CCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 413 PAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 413 p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
|.|.+.|.|+.||+||.|.+|.+.+|++..|
T Consensus 488 p~s~ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 488 HESRRIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred CCcHHHHHHHhccccCCCCCcceEEEEeccH
Confidence 9999999999999999999999999999887
No 72
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-36 Score=274.38 Aligned_cols=288 Identities=25% Similarity=0.377 Sum_probs=213.7
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhcccc---CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEE
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAV---GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv 177 (515)
.+.++|+-|+++|++|.++.++++-..+ .++..++.|+.....+..+ +..+.+|+|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~q---------------------l~~g~~ivv 344 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQ---------------------LKDGTHIVV 344 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHH---------------------hhcCceeee
Confidence 4679999999999999999887775444 2333455565554444433 457789999
Q ss_pred eCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhcccccc
Q 010196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (515)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
+||+++.+.+.. ..+.+.+.+++|+|||+.++..++.+.+..+...++......
T Consensus 345 GtpgRl~~~is~-g~~~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg------------------------- 398 (725)
T KOG0349|consen 345 GTPGRLLQPISK-GLVTLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDG------------------------- 398 (725)
T ss_pred cCchhhhhhhhc-cceeeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCC-------------------------
Confidence 999999999987 456788999999999999999999888888877766443321
Q ss_pred CCCCCCCCceeeEEEEEEecC-CchhhhhcccCCCeeEeeCCccccCCcccceeEEec----------------------
Q 010196 258 GFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC---------------------- 314 (515)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 314 (515)
.+.+.+++|||+.. ++.......+.-|..+...... .+++.+++.....
T Consensus 399 -------~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~ 470 (725)
T KOG0349|consen 399 -------FRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHT 470 (725)
T ss_pred -------cccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccceeecCCccCccHHHHhhhhccCCccc
Confidence 22367889999863 2223333333444443332111 1222222221110
Q ss_pred --------cCCCcH---------HHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHH
Q 010196 315 --------ESKLKP---------LYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKT 377 (515)
Q Consensus 315 --------~~~~k~---------~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~ 377 (515)
.+.+.. +.-+..+++..-.++||||.++..|+.+.+++.+.+...+.+..+||+..+.+|.+.
T Consensus 471 kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~n 550 (725)
T KOG0349|consen 471 KDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKAN 550 (725)
T ss_pred ccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHH
Confidence 011111 112223344456799999999999999999999988888899999999999999999
Q ss_pred HHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 378 l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
++.|+.++.+.||||++++||+|+.++.++|+..+|.+-..|+||+||+||+.+-|.++.++...-
T Consensus 551 le~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~~ 616 (725)
T KOG0349|consen 551 LESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATVP 616 (725)
T ss_pred HHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeeccc
Confidence 999999999999999999999999999999999999999999999999999998899998876443
No 73
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.3e-35 Score=300.96 Aligned_cols=312 Identities=19% Similarity=0.196 Sum_probs=212.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.+||||++|+..++... ..+..++++|||+|||++.+..+. .+. .++|||||+..|+.||.++|.++.....
T Consensus 255 ~LRpYQ~eAl~~~~~~g-r~r~GIIvLPtGaGKTlvai~aa~-~l~------k~tLILvps~~Lv~QW~~ef~~~~~l~~ 326 (732)
T TIGR00603 255 QIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVTAAC-TVK------KSCLVLCTSAVSVEQWKQQFKMWSTIDD 326 (732)
T ss_pred CcCHHHHHHHHHHHhcC-CCCCcEEEeCCCCChHHHHHHHHH-HhC------CCEEEEeCcHHHHHHHHHHHHHhcCCCC
Confidence 59999999998876421 125789999999999999775443 332 2699999999999999999999865434
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC-------cCCCCCcceEEE
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLV 202 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~vV 202 (515)
..+..+.|+.... .....+|+|+|++.+.....+. ..+.-..+++||
T Consensus 327 ~~I~~~tg~~k~~--------------------------~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII 380 (732)
T TIGR00603 327 SQICRFTSDAKER--------------------------FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLIL 380 (732)
T ss_pred ceEEEEecCcccc--------------------------cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEE
Confidence 5566666653210 1123589999999875432211 112234688999
Q ss_pred EcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchh
Q 010196 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (515)
Q Consensus 203 iDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (515)
+||||++....|...+. .+... ..+++|||+......
T Consensus 381 ~DEvH~lpA~~fr~il~----~l~a~---------------------------------------~RLGLTATP~ReD~~ 417 (732)
T TIGR00603 381 LDEVHVVPAAMFRRVLT----IVQAH---------------------------------------CKLGLTATLVREDDK 417 (732)
T ss_pred EEccccccHHHHHHHHH----hcCcC---------------------------------------cEEEEeecCcccCCc
Confidence 99999986655544332 22110 358999998754322
Q ss_pred hhhc-ccCCCeeEeeCCccccCCccccee--------------------------EEeccCCCcHHHHHHHHHhc--CCC
Q 010196 283 LAQL-DLHHPLFLTTGETRYKLPERLESY--------------------------KLICESKLKPLYLVALLQSL--GEE 333 (515)
Q Consensus 283 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~k~~~l~~~l~~~--~~~ 333 (515)
.... .+..|..+...-....-...+..+ ........|...+..+++.. .+.
T Consensus 418 ~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~ 497 (732)
T TIGR00603 418 ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQFLIRFHEQRGD 497 (732)
T ss_pred hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHHHHHHHhhcCC
Confidence 2111 222343332211100000000000 01112334555555566644 578
Q ss_pred eEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC-CceEEEecCCccccCCCCCCCEEEEccC
Q 010196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYDK 412 (515)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g-~~~vLv~T~~~~~GiDi~~v~~VI~~~~ 412 (515)
++||||.+...++.+++.|. +..+||++++.+|..+++.|+.| .+++||+|+++++|+|+|++++||+++.
T Consensus 498 kiLVF~~~~~~l~~~a~~L~--------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~ 569 (732)
T TIGR00603 498 KIIVFSDNVFALKEYAIKLG--------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISS 569 (732)
T ss_pred eEEEEeCCHHHHHHHHHHcC--------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCC
Confidence 99999999999998888762 34589999999999999999975 7899999999999999999999999998
Q ss_pred C-CChhhhHHhhhhcccCCCCccE-------EEEeechhHHH
Q 010196 413 P-AYIKTYIHRAGRTARAGQLGRC-------FTLLHKDEVKR 446 (515)
Q Consensus 413 p-~s~~~~~Qr~GR~gR~g~~g~~-------~~~~~~~d~~~ 446 (515)
| .|...|+||+||++|.+..|.+ +.+++++..++
T Consensus 570 ~~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E~ 611 (732)
T TIGR00603 570 HYGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQEM 611 (732)
T ss_pred CCCCHHHHHHHhcccccCCCCCccccccceEEEEecCCchHH
Confidence 7 5999999999999999876664 77887765443
No 74
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=6.9e-35 Score=312.55 Aligned_cols=324 Identities=23% Similarity=0.302 Sum_probs=228.2
Q ss_pred CCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc
Q 010196 48 ISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (515)
Q Consensus 48 ~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (515)
..++++||.++...++. +|+++++|||+|||+++++++...+.. .+.++||++||++|+.|+.+.+++++..
T Consensus 13 ~~~~r~yQ~~~~~~~l~-----~n~lv~~ptG~GKT~~a~~~i~~~l~~---~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 84 (773)
T PRK13766 13 TIEARLYQQLLAATALK-----KNTLVVLPTGLGKTAIALLVIAERLHK---KGGKVLILAPTKPLVEQHAEFFRKFLNI 84 (773)
T ss_pred cCCccHHHHHHHHHHhc-----CCeEEEcCCCccHHHHHHHHHHHHHHh---CCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 34799999998776543 399999999999999999988887742 3458999999999999999999998654
Q ss_pred cCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
.+.++..+.|+.+..+... +...++|+|+||+.+...+.. ..+.+.++++||+||||
T Consensus 85 ~~~~v~~~~g~~~~~~r~~----------------------~~~~~~iiv~T~~~l~~~l~~-~~~~~~~~~liVvDEaH 141 (773)
T PRK13766 85 PEEKIVVFTGEVSPEKRAE----------------------LWEKAKVIVATPQVIENDLIA-GRISLEDVSLLIFDEAH 141 (773)
T ss_pred CCceEEEEeCCCCHHHHHH----------------------HHhCCCEEEECHHHHHHHHHc-CCCChhhCcEEEEECCc
Confidence 4457888888876554321 223569999999999887765 44667889999999999
Q ss_pred HHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhc-
Q 010196 208 RLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL- 286 (515)
Q Consensus 208 ~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~- 286 (515)
++........+...+.... ....++++|||+......+...
T Consensus 142 ~~~~~~~~~~i~~~~~~~~--------------------------------------~~~~il~lTaTP~~~~~~i~~~~ 183 (773)
T PRK13766 142 RAVGNYAYVYIAERYHEDA--------------------------------------KNPLVLGLTASPGSDEEKIKEVC 183 (773)
T ss_pred cccccccHHHHHHHHHhcC--------------------------------------CCCEEEEEEcCCCCCHHHHHHHH
Confidence 9754322222221111110 1114678888874332111000
Q ss_pred ---c-----------------cCCCeeE--ee--CCc--------------------ccc----CC--------------
Q 010196 287 ---D-----------------LHHPLFL--TT--GET--------------------RYK----LP-------------- 304 (515)
Q Consensus 287 ---~-----------------~~~~~~~--~~--~~~--------------------~~~----~~-------------- 304 (515)
. +..+... .. ... ... ..
T Consensus 184 ~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~ 263 (773)
T PRK13766 184 ENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKK 263 (773)
T ss_pred HhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHH
Confidence 0 0000000 00 000 000 00
Q ss_pred --ccc--------------------------------------------------------------------ceeEEec
Q 010196 305 --ERL--------------------------------------------------------------------ESYKLIC 314 (515)
Q Consensus 305 --~~~--------------------------------------------------------------------~~~~~~~ 314 (515)
..+ .......
T Consensus 264 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 343 (773)
T PRK13766 264 LQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKASKRLVEDPRFRKAVRKAKELD 343 (773)
T ss_pred HHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHHHHHHHhCHHHHHHHHHHHhcc
Confidence 000 0000001
Q ss_pred cCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCc--------cCHHHHHHHHHHHh
Q 010196 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL--------QRQSVRSKTLKAFR 382 (515)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~--------~~~~~r~~~l~~f~ 382 (515)
....|...|.++++. .++.++||||+++..++.+.+.|...+ +.+..+||. |++.+|..+++.|+
T Consensus 344 ~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 420 (773)
T PRK13766 344 IEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEG---IKAVRFVGQASKDGDKGMSQKEQIEILDKFR 420 (773)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCC---CceEEEEccccccccCCCCHHHHHHHHHHHH
Confidence 223455566666654 467899999999999999999997655 667777775 99999999999999
Q ss_pred cCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhH
Q 010196 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (515)
Q Consensus 383 ~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~ 444 (515)
+|+.++||+|+++++|+|+|++++||+||+|++...|+||+||+||.| .|.+++++..+..
T Consensus 421 ~g~~~vLvaT~~~~eGldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~-~~~v~~l~~~~t~ 481 (773)
T PRK13766 421 AGEFNVLVSTSVAEEGLDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQE-EGRVVVLIAKGTR 481 (773)
T ss_pred cCCCCEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccCcCC-CCEEEEEEeCCCh
Confidence 999999999999999999999999999999999999999999999986 4888888876554
No 75
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.7e-35 Score=292.44 Aligned_cols=333 Identities=24% Similarity=0.300 Sum_probs=227.6
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
....+|+||.+....+ + |+|+||++|||+|||++++..+.+++...+ ..++++++|++-|+.|+...+..++.
T Consensus 59 ~~~~lR~YQ~eivq~A----L-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p--~~KiVF~aP~~pLv~QQ~a~~~~~~~ 131 (746)
T KOG0354|consen 59 TNLELRNYQEELVQPA----L-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP--KGKVVFLAPTRPLVNQQIACFSIYLI 131 (746)
T ss_pred CcccccHHHHHHhHHh----h-cCCeEEEeecCCCccchHHHHHHHHHhcCC--cceEEEeeCCchHHHHHHHHHhhccC
Confidence 4457999999885443 3 999999999999999999999999998854 46999999999999999988888765
Q ss_pred ccCcEEEEeecC-CchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 127 AVGLSVGLAVGQ-SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 127 ~~~~~v~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
. -.+....|+ .+.... ..+-...+|+++||+.+.+.+.+.....++.|.++||||
T Consensus 132 ~--~~~T~~l~~~~~~~~r----------------------~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE 187 (746)
T KOG0354|consen 132 P--YSVTGQLGDTVPRSNR----------------------GEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDE 187 (746)
T ss_pred c--ccceeeccCccCCCch----------------------hhhhcccceEEeChHhhhhhcccccccccceEEEEEEcc
Confidence 4 334444444 222221 123345699999999999998875444568999999999
Q ss_pred hhHHHHHH-HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhh
Q 010196 206 TDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (515)
Q Consensus 206 ah~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 284 (515)
||+-.... +...+..++..-. ...|++++|||+..+.....
T Consensus 188 ~Hra~kn~~Y~~Vmr~~l~~k~--------------------------------------~~~qILgLTASpG~~~~~v~ 229 (746)
T KOG0354|consen 188 CHRTSKNHPYNNIMREYLDLKN--------------------------------------QGNQILGLTASPGSKLEQVQ 229 (746)
T ss_pred cccccccccHHHHHHHHHHhhh--------------------------------------ccccEEEEecCCCccHHHHH
Confidence 99854332 2233334433321 11278899999876532211
Q ss_pred hcc------cC-----------------CCeeEeeC------------------------------C-------------
Q 010196 285 QLD------LH-----------------HPLFLTTG------------------------------E------------- 298 (515)
Q Consensus 285 ~~~------~~-----------------~~~~~~~~------------------------------~------------- 298 (515)
... +. .+..+... .
T Consensus 230 ~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~ 309 (746)
T KOG0354|consen 230 NVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAE 309 (746)
T ss_pred HHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHHHHHHHHhcCccccccccccccchhhhhh
Confidence 100 00 00000000 0
Q ss_pred --ccccCCcc----------------------cc-----------------------------------------eeEE-
Q 010196 299 --TRYKLPER----------------------LE-----------------------------------------SYKL- 312 (515)
Q Consensus 299 --~~~~~~~~----------------------~~-----------------------------------------~~~~- 312 (515)
.....+.. ++ .+..
T Consensus 310 ~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~ 389 (746)
T KOG0354|consen 310 KAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVALKKYLKLELEARLIRNFTENMNELEHLSLD 389 (746)
T ss_pred hhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccchhHHHHHHhcchhhHHHHHHHHhhhhhhcC
Confidence 00000000 00 0000
Q ss_pred eccCCCcHHHHHHHHH----hcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEcc--------CccCHHHHHHHHHH
Q 010196 313 ICESKLKPLYLVALLQ----SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS--------GLQRQSVRSKTLKA 380 (515)
Q Consensus 313 ~~~~~~k~~~l~~~l~----~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~--------~~~~~~~r~~~l~~ 380 (515)
....+.|.+.+.+.+. ..+..++||||.++..+..|.++|.+....+++...+. .+|++.+..++++.
T Consensus 390 ~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~ 469 (746)
T KOG0354|consen 390 PPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDK 469 (746)
T ss_pred CCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHH
Confidence 0012334444444443 22456899999999999999999985433334433333 38999999999999
Q ss_pred HhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHH
Q 010196 381 FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450 (515)
Q Consensus 381 f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~ 450 (515)
|+.|+.+|||||+++++|+|++.|++||.||...++...+||.|| ||+ +.|.|+++.+..+...++..
T Consensus 470 Fr~G~~NvLVATSV~EEGLDI~ec~lVIcYd~~snpIrmIQrrGR-gRa-~ns~~vll~t~~~~~~~E~~ 537 (746)
T KOG0354|consen 470 FRDGEINVLVATSVAEEGLDIGECNLVICYDYSSNPIRMVQRRGR-GRA-RNSKCVLLTTGSEVIEFERN 537 (746)
T ss_pred HhCCCccEEEEecchhccCCcccccEEEEecCCccHHHHHHHhcc-ccc-cCCeEEEEEcchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999 998 57899999886655444433
No 76
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=5.4e-34 Score=275.66 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=194.8
Q ss_pred hhHHHHHHHhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc---
Q 010196 54 VQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV--- 128 (515)
Q Consensus 54 ~Q~~a~~~~~~~~~~~~--~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~--- 128 (515)
+|.++++.+.. +. ++++.||||+|||.+|++|++. ...+++|++|+++|+.|+++.+++++...
T Consensus 1 hQ~~~~~~~~~----~~~~~~~i~apTGsGKT~~~~~~~l~-------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQS----KDADIIFNTAPTGAGKTLAWLTPLLH-------GENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHc----CCCCEEEEECCCCCCHHHHHHHHHHH-------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 58999888764 43 4789999999999999999884 12368999999999999999999887432
Q ss_pred -CcEEEEeecCCchHHHHHHHh-ccCcccccccCCchhHHHhh-ccCCcEEEeCChHHHHHHhcC---cCC----CCCcc
Q 010196 129 -GLSVGLAVGQSSIADEISELI-KRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINAT---RGF----TLEHL 198 (515)
Q Consensus 129 -~~~v~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~---~~~----~~~~~ 198 (515)
+..+..+.|....+.. .+. .......+. ......+... ...++|+++||+.|..++... +.. .+..+
T Consensus 70 ~~~~v~~~~g~~~~d~~--~~~~~~~~~~~g~-~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~ 146 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIK--EYANDKVGSSKGE-KLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKF 146 (357)
T ss_pred CCceEEEecCCchHHHH--HhhhhhcccCccc-hhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCC
Confidence 5667777775332211 110 000000000 0001111111 346899999999997665432 111 14689
Q ss_pred eEEEEcchhHHHHHHHHhHH-----HHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 199 CYLVVDETDRLLREAYQAWL-----PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 199 ~~vViDEah~l~~~~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
++||+||+|.+........+ ..++.... ...+++++|
T Consensus 147 ~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~--------------------------------------~~~~~i~lS 188 (357)
T TIGR03158 147 STVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFE--------------------------------------CRRKFVFLS 188 (357)
T ss_pred CEEEEecccccCcccchhhhhhhHHHHHHHhhh--------------------------------------cCCcEEEEe
Confidence 99999999986432221111 11111110 113789999
Q ss_pred EEecCCchhhhhcc--cCCCeeEeeCCc--c---c----c--------CCcccceeEEeccCCCcHHHHHHHH-------
Q 010196 274 ATLTQDPNKLAQLD--LHHPLFLTTGET--R---Y----K--------LPERLESYKLICESKLKPLYLVALL------- 327 (515)
Q Consensus 274 aT~~~~~~~~~~~~--~~~~~~~~~~~~--~---~----~--------~~~~~~~~~~~~~~~~k~~~l~~~l------- 327 (515)
||++.......... ...+.....+.. . . . ....++..... ....+...+..++
T Consensus 189 AT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~ 267 (357)
T TIGR03158 189 ATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERF 267 (357)
T ss_pred cCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHH
Confidence 99976544443322 233332222220 0 0 0 00122222222 2233333332222
Q ss_pred HhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEE
Q 010196 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (515)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~V 407 (515)
+..+++++||||+|+..++.+++.|++.+ .+..+..+||.+++.+|.+. ++.+|||||+++++|+|+|.+ +|
T Consensus 268 ~~~~~~k~LIf~nt~~~~~~l~~~L~~~~-~~~~~~~l~g~~~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~-~v 339 (357)
T TIGR03158 268 RQLPGERGAIILDSLDEVNRLSDLLQQQG-LGDDIGRITGFAPKKDRERA------MQFDILLGTSTVDVGVDFKRD-WL 339 (357)
T ss_pred hccCCCeEEEEECCHHHHHHHHHHHhhhC-CCceEEeeecCCCHHHHHHh------ccCCEEEEecHHhcccCCCCc-eE
Confidence 22356799999999999999999998753 23578889999999988654 378999999999999999976 55
Q ss_pred EEccCCCChhhhHHhhhhcc
Q 010196 408 VNYDKPAYIKTYIHRAGRTA 427 (515)
Q Consensus 408 I~~~~p~s~~~~~Qr~GR~g 427 (515)
| ++ |.+.++|+||+||+|
T Consensus 340 i-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 340 I-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred E-EC-CCCHHHHhhhcccCC
Confidence 5 45 889999999999997
No 77
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=283.25 Aligned_cols=345 Identities=20% Similarity=0.259 Sum_probs=245.4
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc------cCcccEEEEcccHHHHHHHH
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~------~~~~~~lil~Pt~~L~~q~~ 118 (515)
-++|.++..+|..+++.+.. ++.|.||+||||+|||-.|++.++..+.++. ....+++|++|+++||.+++
T Consensus 105 ~f~f~~fN~iQS~vFp~aY~---SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 105 FFSFEEFNRIQSEVFPVAYK---SNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred cccHHHHHHHHHHhhhhhhc---CCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHH
Confidence 46888999999999987764 6899999999999999999999999998632 24678999999999999999
Q ss_pred HHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC---CCC
Q 010196 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG---FTL 195 (515)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~---~~~ 195 (515)
+.+.+-+..+|++|..++|++...+.. -..++|+|+||+.+ +.+.+... -.+
T Consensus 182 ~~~~kkl~~~gi~v~ELTGD~ql~~te------------------------i~~tqiiVTTPEKw-DvvTRk~~~d~~l~ 236 (1230)
T KOG0952|consen 182 DKFSKKLAPLGISVRELTGDTQLTKTE------------------------IADTQIIVTTPEKW-DVVTRKSVGDSALF 236 (1230)
T ss_pred HHHhhhcccccceEEEecCcchhhHHH------------------------HHhcCEEEecccce-eeeeeeeccchhhh
Confidence 999888888899999999998755432 13469999999996 44433111 135
Q ss_pred CcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEE
Q 010196 196 EHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (515)
Q Consensus 196 ~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 275 (515)
+.+.+||+||+|. +.+..+..++.|...+...-+. ....++++.+|||
T Consensus 237 ~~V~LviIDEVHl-Lhd~RGpvlEtiVaRtlr~ves-------------------------------sqs~IRivgLSAT 284 (1230)
T KOG0952|consen 237 SLVRLVIIDEVHL-LHDDRGPVLETIVARTLRLVES-------------------------------SQSMIRIVGLSAT 284 (1230)
T ss_pred hheeeEEeeeehh-hcCcccchHHHHHHHHHHHHHh-------------------------------hhhheEEEEeecc
Confidence 6789999999995 6777888888887765421110 0123478999999
Q ss_pred ecCCchhhhhcccCCC----eeEeeCCccccCCcccceeEEecc-CCCcHH-----HHHHHHHh-cCCCeEEEEcCChhh
Q 010196 276 LTQDPNKLAQLDLHHP----LFLTTGETRYKLPERLESYKLICE-SKLKPL-----YLVALLQS-LGEEKCIVFTSSVES 344 (515)
Q Consensus 276 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~-----~l~~~l~~-~~~~~~lVf~~s~~~ 344 (515)
+|+ ..+++.+.-.+| ..+..... +.+-.......... ...+.. ...+.++. ..+.+++|||.++..
T Consensus 285 lPN-~eDvA~fL~vn~~~glfsFd~~yR--PvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~g~qVlvFvhsR~~ 361 (1230)
T KOG0952|consen 285 LPN-YEDVARFLRVNPYAGLFSFDQRYR--PVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQEGHQVLVFVHSRNE 361 (1230)
T ss_pred CCC-HHHHHHHhcCCCccceeeeccccc--ccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHcCCeEEEEEecChH
Confidence 975 333333322222 12212221 12211112222221 011111 11122222 247899999999999
Q ss_pred HHHHHHHHhhcCC--------------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCC
Q 010196 345 THRLCTLLNHFGE--------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV 404 (515)
Q Consensus 345 ~~~l~~~L~~~~~--------------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v 404 (515)
+...++.|.+... ......++|++|...+|..+.+.|+.|-++||+||..++.|+|+|+
T Consensus 362 Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA- 440 (1230)
T KOG0952|consen 362 TIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPA- 440 (1230)
T ss_pred HHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcc-
Confidence 9999998865321 1146788999999999999999999999999999999999999995
Q ss_pred CEEEEcc-----CCC------ChhhhHHhhhhcccC--CCCccEEEEeechhHHHHHHHHHH
Q 010196 405 NNVVNYD-----KPA------YIKTYIHRAGRTARA--GQLGRCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 405 ~~VI~~~-----~p~------s~~~~~Qr~GR~gR~--g~~g~~~~~~~~~d~~~~~~~~~~ 453 (515)
.+||.-+ ... .+-+-+|..|||||- +..|.++++.+.+-++.+..++..
T Consensus 441 ~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~ 502 (1230)
T KOG0952|consen 441 YAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTG 502 (1230)
T ss_pred eEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcC
Confidence 5666533 221 245678999999995 455999999888877777777554
No 78
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=100.00 E-value=1.8e-32 Score=268.45 Aligned_cols=328 Identities=19% Similarity=0.223 Sum_probs=242.6
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 38 ~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.+.+.+..+.| ++|..|++++.+|...+.+. .+=++++..|||||++++++++..+..+ .++..++||.-||.
T Consensus 251 l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G----~Q~ALMAPTEILA~ 325 (677)
T COG1200 251 LLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG----YQAALMAPTEILAE 325 (677)
T ss_pred HHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcC----CeeEEeccHHHHHH
Confidence 34455567888 79999999999998877665 4578999999999999999999887664 48999999999999
Q ss_pred HHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccC-CcEEEeCChHHHHHHhcCcCCC
Q 010196 116 QVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 116 q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
|.++.+.++++.++++|..++|......... +...+.++ .+|+|+|..-+. ....
T Consensus 326 QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~------------------~l~~l~~G~~~ivVGTHALiQ------d~V~ 381 (677)
T COG1200 326 QHYESLRKWLEPLGIRVALLTGSLKGKARKE------------------ILEQLASGEIDIVVGTHALIQ------DKVE 381 (677)
T ss_pred HHHHHHHHHhhhcCCeEEEeecccchhHHHH------------------HHHHHhCCCCCEEEEcchhhh------ccee
Confidence 9999999999999999999999987655432 22344454 899999955442 2356
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++.+||+||-|++.-... ..+..-... ....+.|||
T Consensus 382 F~~LgLVIiDEQHRFGV~QR-----~~L~~KG~~-------------------------------------~Ph~LvMTA 419 (677)
T COG1200 382 FHNLGLVIIDEQHRFGVHQR-----LALREKGEQ-------------------------------------NPHVLVMTA 419 (677)
T ss_pred ecceeEEEEeccccccHHHH-----HHHHHhCCC-------------------------------------CCcEEEEeC
Confidence 78999999999999743322 111111000 115689999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhH-------
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVEST------- 345 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~------- 345 (515)
|+-+....+.....-+...+..-+.. ...+..+. -...+...+++.+... .+.++.|.|+-+++.
T Consensus 420 TPIPRTLAlt~fgDldvS~IdElP~G---RkpI~T~~---i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~ 493 (677)
T COG1200 420 TPIPRTLALTAFGDLDVSIIDELPPG---RKPITTVV---IPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQA 493 (677)
T ss_pred CCchHHHHHHHhccccchhhccCCCC---CCceEEEE---eccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhh
Confidence 99877666554433332222211100 01122222 2334455555554432 577899999876554
Q ss_pred -HHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-ChhhhHHhh
Q 010196 346 -HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRA 423 (515)
Q Consensus 346 -~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~-s~~~~~Qr~ 423 (515)
..+++.|+... .+.++..+||.|+..++++++++|++|+++|||||.+.+.|||+|++++.|+.+.-. -..++.|-.
T Consensus 494 a~~~~~~L~~~~-~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLR 572 (677)
T COG1200 494 AEELYEELKSFL-PELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLR 572 (677)
T ss_pred HHHHHHHHHHHc-ccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhc
Confidence 45666676432 457899999999999999999999999999999999999999999999999987543 367899999
Q ss_pred hhcccCCCCccEEEEeechh
Q 010196 424 GRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 424 GR~gR~g~~g~~~~~~~~~d 443 (515)
||+||.+..+.|++++.+..
T Consensus 573 GRVGRG~~qSyC~Ll~~~~~ 592 (677)
T COG1200 573 GRVGRGDLQSYCVLLYKPPL 592 (677)
T ss_pred cccCCCCcceEEEEEeCCCC
Confidence 99999999999999998765
No 79
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.1e-32 Score=287.27 Aligned_cols=124 Identities=20% Similarity=0.207 Sum_probs=111.8
Q ss_pred CCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC--CceEEEecCC
Q 010196 317 KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLVSSDA 394 (515)
Q Consensus 317 ~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g--~~~vLv~T~~ 394 (515)
+.|...|..+++.....|+||||+++..+..+.+.|+.. .++.+..+||+|++.+|.++++.|+++ ..+|||||++
T Consensus 478 d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~--~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdv 555 (956)
T PRK04914 478 DPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER--EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEI 555 (956)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc--cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechh
Confidence 457778888888877899999999999999999999542 238999999999999999999999974 5999999999
Q ss_pred ccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeech
Q 010196 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (515)
+++|+|++.+++||+||+|+++..|.||+||++|.|+.+.+.+++...
T Consensus 556 gseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~~ 603 (956)
T PRK04914 556 GSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIGQKHDIQIHVPYL 603 (956)
T ss_pred hccCCCcccccEEEEecCCCCHHHHHHHhcccccCCCCceEEEEEccC
Confidence 999999999999999999999999999999999999998877666543
No 80
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=100.00 E-value=3.1e-33 Score=251.72 Aligned_cols=342 Identities=20% Similarity=0.288 Sum_probs=247.1
Q ss_pred CCHHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 35 l~~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
.+.+..+.|++ |..+.++|.|.+++... ..|.++++..|||.||+++|.+|++ ....-+||++|..+|
T Consensus 78 ws~e~~~ilk~~f~lekfrplq~~ain~~----ma~ed~~lil~tgggkslcyqlpal-------~adg~alvi~plisl 146 (695)
T KOG0353|consen 78 WSDEAKDILKEQFHLEKFRPLQLAAINAT----MAGEDAFLILPTGGGKSLCYQLPAL-------CADGFALVICPLISL 146 (695)
T ss_pred CchHHHHHHHHHhhHHhcChhHHHHhhhh----hccCceEEEEeCCCccchhhhhhHH-------hcCCceEeechhHHH
Confidence 77788888876 68899999999996655 4599999999999999999999998 234479999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHH------HHH
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM------DHI 187 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~------~~l 187 (515)
++++.-.++.+ |+....+...++..+...-- .....-......++.||+.+. +.+
T Consensus 147 medqil~lkql----gi~as~lnansske~~k~v~---------------~~i~nkdse~kliyvtpekiaksk~~mnkl 207 (695)
T KOG0353|consen 147 MEDQILQLKQL----GIDASMLNANSSKEEAKRVE---------------AAITNKDSEFKLIYVTPEKIAKSKKFMNKL 207 (695)
T ss_pred HHHHHHHHHHh----CcchhhccCcccHHHHHHHH---------------HHHcCCCceeEEEEecHHHHHHHHHHHHHH
Confidence 99888888887 56655555555543321100 000001123579999999764 333
Q ss_pred hcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCce
Q 010196 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
. +.+....+.+|.+||+|+...+++. |++.| ..+..++ ..++..
T Consensus 208 e--ka~~~~~~~~iaidevhccsqwghd-----------------------fr~dy-~~l~ilk----------rqf~~~ 251 (695)
T KOG0353|consen 208 E--KALEAGFFKLIAIDEVHCCSQWGHD-----------------------FRPDY-KALGILK----------RQFKGA 251 (695)
T ss_pred H--HHhhcceeEEEeecceeehhhhCcc-----------------------cCcch-HHHHHHH----------HhCCCC
Confidence 3 2356678999999999997655431 11110 0000000 113556
Q ss_pred eeEEEEEEecCCchhhhhccc--CCCeeEeeCCccccCCcccceeEEeccCCC---cHHHHHHHHH-hcCCCeEEEEcCC
Q 010196 268 VKMVLSATLTQDPNKLAQLDL--HHPLFLTTGETRYKLPERLESYKLICESKL---KPLYLVALLQ-SLGEEKCIVFTSS 341 (515)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l~-~~~~~~~lVf~~s 341 (515)
+++.++||.++.+..-++..+ ...+.+..+..+.++ .|.+...+.. -.+.+..++. ...+...||||-+
T Consensus 252 ~iigltatatn~vl~d~k~il~ie~~~tf~a~fnr~nl-----~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~s 326 (695)
T KOG0353|consen 252 PIIGLTATATNHVLDDAKDILCIEAAFTFRAGFNRPNL-----KYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFS 326 (695)
T ss_pred ceeeeehhhhcchhhHHHHHHhHHhhheeecccCCCCc-----eeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEec
Confidence 889999998877655443222 233334444433332 2222222222 2333444444 3457789999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHH
Q 010196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIH 421 (515)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Q 421 (515)
.+.|+.++..|+..| +....||..|.+.+|..+-+.|..|++.|+|+|-++++|||-|++++||+-.+|+|.+.|.|
T Consensus 327 q~d~ekva~alkn~g---i~a~~yha~lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 327 QKDCEKVAKALKNHG---IHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred cccHHHHHHHHHhcC---ccccccccccCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 999999999999877 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred -------------------------------------------hhhhcccCCCCccEEEEeechhHHHHHHH
Q 010196 422 -------------------------------------------RAGRTARAGQLGRCFTLLHKDEVKRFKKL 450 (515)
Q Consensus 422 -------------------------------------------r~GR~gR~g~~g~~~~~~~~~d~~~~~~~ 450 (515)
..||+||.+.+..|++++.-.|+-.....
T Consensus 404 asarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~difk~ssm 475 (695)
T KOG0353|consen 404 ASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIFKISSM 475 (695)
T ss_pred HHHHHHHHHhhhcccccCCCcceeehhhhhccceeeeeeecchhccccccCCCcccEEEEechHHHHhHHHH
Confidence 77999999999999999988776544433
No 81
>PRK09694 helicase Cas3; Provisional
Probab=100.00 E-value=8.3e-31 Score=273.66 Aligned_cols=336 Identities=19% Similarity=0.198 Sum_probs=211.4
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..|+|+|..+... . ..+..+++.||||+|||.+++.++...+..+ ...+++|..||+++++|+++.++++....
T Consensus 285 ~~p~p~Q~~~~~~--~--~~pgl~ileApTGsGKTEAAL~~A~~l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~ 358 (878)
T PRK09694 285 YQPRQLQTLVDAL--P--LQPGLTIIEAPTGSGKTEAALAYAWRLIDQG--LADSIIFALPTQATANAMLSRLEALASKL 358 (878)
T ss_pred CCChHHHHHHHhh--c--cCCCeEEEEeCCCCCHHHHHHHHHHHHHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHh
Confidence 4799999987321 1 2456799999999999999887766554443 23479999999999999999998754322
Q ss_pred --CcEEEEeecCCchHHHHHHHhccCcccccccCCch--hHHHh-hcc---CCcEEEeCChHHHHHHhcCcCCCCCcc--
Q 010196 129 --GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPE--DVLQE-LQS---AVDILVATPGRLMDHINATRGFTLEHL-- 198 (515)
Q Consensus 129 --~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-l~~---~~~Ivv~Tp~~l~~~l~~~~~~~~~~~-- 198 (515)
..++.+.+|..........+............... ..|.. .++ -.+|+|||+++++......+...+..+
T Consensus 359 f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~L 438 (878)
T PRK09694 359 FPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGL 438 (878)
T ss_pred cCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhh
Confidence 35788888887655443333221100000000000 01111 111 269999999999866554333223333
Q ss_pred --eEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEe
Q 010196 199 --CYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATL 276 (515)
Q Consensus 199 --~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~ 276 (515)
++|||||+|.+ +......+..+++.+... ..++++||||+
T Consensus 439 a~svvIiDEVHAy-D~ym~~lL~~~L~~l~~~-------------------------------------g~~vIllSATL 480 (878)
T PRK09694 439 GRSVLIVDEVHAY-DAYMYGLLEAVLKAQAQA-------------------------------------GGSVILLSATL 480 (878)
T ss_pred ccCeEEEechhhC-CHHHHHHHHHHHHHHHhc-------------------------------------CCcEEEEeCCC
Confidence 48999999986 444445566666554321 12689999999
Q ss_pred cCCchh-hhhcccC---------CCeeEeeC---CccccCCcc----cceeEEec-----cC-CCcHHHHHHHHHh-cCC
Q 010196 277 TQDPNK-LAQLDLH---------HPLFLTTG---ETRYKLPER----LESYKLIC-----ES-KLKPLYLVALLQS-LGE 332 (515)
Q Consensus 277 ~~~~~~-~~~~~~~---------~~~~~~~~---~~~~~~~~~----~~~~~~~~-----~~-~~k~~~l~~~l~~-~~~ 332 (515)
+..... +...+-. -|.+.... ......... .....+.. .. ......+..+++. ..+
T Consensus 481 P~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g 560 (878)
T PRK09694 481 PATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAG 560 (878)
T ss_pred CHHHHHHHHHHhccccccccccccccccccccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcC
Confidence 865543 2221100 01110000 000000000 00111111 11 1112233333333 346
Q ss_pred CeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHH----HHHHHHH-hcCC---ceEEEecCCccccCCCCCC
Q 010196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR----SKTLKAF-REGK---IQVLVSSDAMTRGMDVEGV 404 (515)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r----~~~l~~f-~~g~---~~vLv~T~~~~~GiDi~~v 404 (515)
++++|||||++.++.+++.|++.+..+..+..+||+++..+| .++++.| ++|+ ..|||+|+++++|+|++ +
T Consensus 561 ~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~ 639 (878)
T PRK09694 561 AQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-F 639 (878)
T ss_pred CEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-C
Confidence 789999999999999999998754334679999999999999 4678888 5665 47999999999999995 8
Q ss_pred CEEEEccCCCChhhhHHhhhhcccCCC
Q 010196 405 NNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (515)
Q Consensus 405 ~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 431 (515)
+++|....| .+.|+||+||++|.+.
T Consensus 640 DvlItdlaP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 640 DWLITQLCP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred CeEEECCCC--HHHHHHHHhccCCCCC
Confidence 999988777 7899999999999876
No 82
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-31 Score=265.18 Aligned_cols=296 Identities=24% Similarity=0.306 Sum_probs=206.0
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.|+++|++|+..+......++..++.+|||+|||.+++..+- .+.. .+|||||+.+|+.||.+.+.......
T Consensus 36 ~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~-~~~~------~~Lvlv~~~~L~~Qw~~~~~~~~~~~- 107 (442)
T COG1061 36 ELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA-ELKR------STLVLVPTKELLDQWAEALKKFLLLN- 107 (442)
T ss_pred CCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHH-HhcC------CEEEEECcHHHHHHHHHHHHHhcCCc-
Confidence 699999999998877655588899999999999998766444 2222 49999999999999998887775432
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
..++.+.|+.... .. ..|+|+|.+.+..... ...+....+++||+||||++
T Consensus 108 ~~~g~~~~~~~~~---------------------------~~-~~i~vat~qtl~~~~~-l~~~~~~~~~liI~DE~Hh~ 158 (442)
T COG1061 108 DEIGIYGGGEKEL---------------------------EP-AKVTVATVQTLARRQL-LDEFLGNEFGLIIFDEVHHL 158 (442)
T ss_pred cccceecCceecc---------------------------CC-CcEEEEEhHHHhhhhh-hhhhcccccCEEEEEccccC
Confidence 2344444433210 01 2699999999876420 01133447999999999999
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchh-hhhc-c
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK-LAQL-D 287 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~-~~~~-~ 287 (515)
....+......+.... ..+.+|||+...... .... .
T Consensus 159 ~a~~~~~~~~~~~~~~------------------------------------------~~LGLTATp~R~D~~~~~~l~~ 196 (442)
T COG1061 159 PAPSYRRILELLSAAY------------------------------------------PRLGLTATPEREDGGRIGDLFD 196 (442)
T ss_pred CcHHHHHHHHhhhccc------------------------------------------ceeeeccCceeecCCchhHHHH
Confidence 8777665554443221 158899997632211 1111 1
Q ss_pred cCCCeeEeeCCccccCCcccce-----------------------------------------eEEeccCCCcHHHHHHH
Q 010196 288 LHHPLFLTTGETRYKLPERLES-----------------------------------------YKLICESKLKPLYLVAL 326 (515)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~k~~~l~~~ 326 (515)
+..|..+........-...+.. .........+...+..+
T Consensus 197 ~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (442)
T COG1061 197 LIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAIASERKIAAVRGL 276 (442)
T ss_pred hcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHH
Confidence 1123333222110000000000 00111122233344444
Q ss_pred HHhc-CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCC
Q 010196 327 LQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN 405 (515)
Q Consensus 327 l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~ 405 (515)
+... .+.+++||+.+..+++.++..+...+ . +..+++..+..+|.++++.|+.|+.++||++.++.+|+|+|+++
T Consensus 277 ~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~---~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~ 352 (442)
T COG1061 277 LLKHARGDKTLIFASDVEHAYEIAKLFLAPG---I-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDAD 352 (442)
T ss_pred HHHhcCCCcEEEEeccHHHHHHHHHHhcCCC---c-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCc
Confidence 4444 46799999999999999999997654 4 77899999999999999999999999999999999999999999
Q ss_pred EEEEccCCCChhhhHHhhhhccc
Q 010196 406 NVVNYDKPAYIKTYIHRAGRTAR 428 (515)
Q Consensus 406 ~VI~~~~p~s~~~~~Qr~GR~gR 428 (515)
++|......|...|+||+||..|
T Consensus 353 ~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 353 VLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred EEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999
No 83
>PRK05580 primosome assembly protein PriA; Validated
Probab=100.00 E-value=6.4e-31 Score=272.94 Aligned_cols=320 Identities=21% Similarity=0.243 Sum_probs=210.1
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.+++.|.+++..+.... .++++++.|+||||||.+|+.++.+.+.. +.++||++|+++|+.|+.+.+++.+ +
T Consensus 144 ~Lt~~Q~~ai~~i~~~~-~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~----g~~vLvLvPt~~L~~Q~~~~l~~~f---g 215 (679)
T PRK05580 144 TLNPEQAAAVEAIRAAA-GFSPFLLDGVTGSGKTEVYLQAIAEVLAQ----GKQALVLVPEIALTPQMLARFRARF---G 215 (679)
T ss_pred CCCHHHHHHHHHHHhcc-CCCcEEEECCCCChHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---C
Confidence 58999999999887643 45789999999999999999888777754 3479999999999999999998864 5
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
.++..++|+.+..++... |..+ ...++|+|+|++.+. ..+.++++||+||+|.
T Consensus 216 ~~v~~~~s~~s~~~r~~~------------------~~~~~~g~~~IVVgTrsal~--------~p~~~l~liVvDEeh~ 269 (679)
T PRK05580 216 APVAVLHSGLSDGERLDE------------------WRKAKRGEAKVVIGARSALF--------LPFKNLGLIIVDEEHD 269 (679)
T ss_pred CCEEEEECCCCHHHHHHH------------------HHHHHcCCCCEEEeccHHhc--------ccccCCCEEEEECCCc
Confidence 788999999876655332 2333 345799999998763 2367899999999997
Q ss_pred HHHHHHHh---HHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhh
Q 010196 209 LLREAYQA---WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (515)
Q Consensus 209 l~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 285 (515)
..-..... ....+..... .....+++++|||++......+.
T Consensus 270 ~s~~~~~~p~y~~r~va~~ra------------------------------------~~~~~~~il~SATps~~s~~~~~ 313 (679)
T PRK05580 270 SSYKQQEGPRYHARDLAVVRA------------------------------------KLENIPVVLGSATPSLESLANAQ 313 (679)
T ss_pred cccccCcCCCCcHHHHHHHHh------------------------------------hccCCCEEEEcCCCCHHHHHHHh
Confidence 42111000 0011110000 01234789999997644333322
Q ss_pred cccCCCeeEeeCCccccCCcccceeEEec--cC---CCcHHHHHHHHHh-c-CCCeEEEEcCCh----------------
Q 010196 286 LDLHHPLFLTTGETRYKLPERLESYKLIC--ES---KLKPLYLVALLQS-L-GEEKCIVFTSSV---------------- 342 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~k~~~l~~~l~~-~-~~~~~lVf~~s~---------------- 342 (515)
..................+. +....... .. ..-...+.+.+++ . .+.++|||+|++
T Consensus 314 ~g~~~~~~l~~r~~~~~~p~-v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~ 392 (679)
T PRK05580 314 QGRYRLLRLTKRAGGARLPE-VEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAE 392 (679)
T ss_pred ccceeEEEeccccccCCCCe-EEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccC
Confidence 11111111111111111111 10000000 00 0011334444432 2 355888887752
Q ss_pred --------------------------------------------hhHHHHHHHHhhcCCCceeEEEccCccCH--HHHHH
Q 010196 343 --------------------------------------------ESTHRLCTLLNHFGELRIKIKEYSGLQRQ--SVRSK 376 (515)
Q Consensus 343 --------------------------------------------~~~~~l~~~L~~~~~~~~~v~~~~~~~~~--~~r~~ 376 (515)
..++.+++.|.... .+.++..+|+++.+ .++++
T Consensus 393 C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f-p~~~v~~~~~d~~~~~~~~~~ 471 (679)
T PRK05580 393 CPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF-PEARILRIDRDTTRRKGALEQ 471 (679)
T ss_pred CCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC-CCCcEEEEeccccccchhHHH
Confidence 14466777776643 24688999999874 67899
Q ss_pred HHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC--CCC----------hhhhHHhhhhcccCCCCccEEEEeec
Q 010196 377 TLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--PAY----------IKTYIHRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 377 ~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~--p~s----------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
+++.|++|+.+|||+|+++++|+|+|++++|+.++. +.+ ...|+|++||+||.+..|.+++....
T Consensus 472 ~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~g~viiqT~~ 548 (679)
T PRK05580 472 LLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKPGEVLIQTYH 548 (679)
T ss_pred HHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCCCEEEEEeCC
Confidence 999999999999999999999999999999976654 322 25689999999999999999976643
No 84
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=2.5e-31 Score=282.91 Aligned_cols=301 Identities=19% Similarity=0.244 Sum_probs=200.2
Q ss_pred hCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc----cHHHHHHHHHHHHHhccccCcEEEEeecC
Q 010196 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP----TRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (515)
Q Consensus 63 ~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P----t~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 138 (515)
+..+..++.++++|+||||||. ++|.+..-... .....+++.-| +++||.++++++..- +|-.|+.-...
T Consensus 83 l~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-g~~g~I~~TQPRRlAArsLA~RVA~El~~~---lG~~VGY~vrf 156 (1294)
T PRK11131 83 LEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-GVKGLIGHTQPRRLAARTVANRIAEELETE---LGGCVGYKVRF 156 (1294)
T ss_pred HHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-CCCCceeeCCCcHHHHHHHHHHHHHHHhhh---hcceeceeecC
Confidence 3333456778899999999998 46744222111 11112333336 568888888887642 12223221111
Q ss_pred CchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchh-HHHHHHHHhH
Q 010196 139 SSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD-RLLREAYQAW 217 (515)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah-~l~~~~~~~~ 217 (515)
.+ ....+++|+|+|||+|++.+.... .++++++||+|||| ++++.+|...
T Consensus 157 ~~---------------------------~~s~~t~I~v~TpG~LL~~l~~d~--~Ls~~~~IIIDEAHERsLn~DfLLg 207 (1294)
T PRK11131 157 ND---------------------------QVSDNTMVKLMTDGILLAEIQQDR--LLMQYDTIIIDEAHERSLNIDFILG 207 (1294)
T ss_pred cc---------------------------ccCCCCCEEEEChHHHHHHHhcCC--ccccCcEEEecCccccccccchHHH
Confidence 00 112457999999999999987643 37899999999999 5666655421
Q ss_pred HHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeC
Q 010196 218 LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (515)
Q Consensus 218 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (515)
.+...++. .+..+++++|||+. ...+...+...|.+ ...
T Consensus 208 --~Lk~lL~~------------------------------------rpdlKvILmSATid--~e~fs~~F~~apvI-~V~ 246 (1294)
T PRK11131 208 --YLKELLPR------------------------------------RPDLKVIITSATID--PERFSRHFNNAPII-EVS 246 (1294)
T ss_pred --HHHHhhhc------------------------------------CCCceEEEeeCCCC--HHHHHHHcCCCCEE-EEc
Confidence 11111111 12348899999995 34555555555543 332
Q ss_pred CccccCCcccceeEEeccCCC---cHHHHHHHH------HhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCc
Q 010196 298 ETRYKLPERLESYKLICESKL---KPLYLVALL------QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGL 368 (515)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~---k~~~l~~~l------~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~ 368 (515)
...++ ++.++....... +.+.+..++ .....+.+|||+++..+++.+++.|...+.....+..+||+
T Consensus 247 Gr~~p----Vei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~ 322 (1294)
T PRK11131 247 GRTYP----VEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYAR 322 (1294)
T ss_pred Ccccc----ceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccC
Confidence 22222 233333322111 222222222 23356789999999999999999998765334568899999
Q ss_pred cCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEcc---------------CC---CChhhhHHhhhhcccCC
Q 010196 369 QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD---------------KP---AYIKTYIHRAGRTARAG 430 (515)
Q Consensus 369 ~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~---------------~p---~s~~~~~Qr~GR~gR~g 430 (515)
+++.+|..+++. .|..+|||||+++++|||+|++++||+++ +| .|..+|.||+||+||.
T Consensus 323 Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~- 399 (1294)
T PRK11131 323 LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV- 399 (1294)
T ss_pred CCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC-
Confidence 999999999886 47789999999999999999999999986 33 3457899999999999
Q ss_pred CCccEEEEeechhHHH
Q 010196 431 QLGRCFTLLHKDEVKR 446 (515)
Q Consensus 431 ~~g~~~~~~~~~d~~~ 446 (515)
.+|.|+.++++.+...
T Consensus 400 ~~G~c~rLyte~d~~~ 415 (1294)
T PRK11131 400 SEGICIRLYSEDDFLS 415 (1294)
T ss_pred CCcEEEEeCCHHHHHh
Confidence 6899999999887654
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1e-29 Score=259.82 Aligned_cols=356 Identities=19% Similarity=0.229 Sum_probs=233.5
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|++.|.- ..+.....-|..++||+|||++|.+|++..+..+ ..++|++||++||.|.++++..+.
T Consensus 79 lg~-~~ydvQli------Gg~~Lh~G~Iaem~TGeGKTL~a~Lpa~~~al~G----~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 79 LGL-RHFDVQLI------GGMVLHEGNIAEMRTGEGKTLVATLPAYLNAISG----RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred cCC-CcchHHHh------hhhhhccCccccccCCCCchHHHHHHHHHHHhcC----CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 454 67888853 3333456679999999999999999999777653 369999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcCCCC-----Ccce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (515)
..+|+++++++|+.+...+... ..++|+|+||++| ++++.....+.+ ..+.
T Consensus 148 ~~lGLtv~~i~gg~~~~~r~~~-----------------------y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~ 204 (896)
T PRK13104 148 EFLGLTVGVIYPDMSHKEKQEA-----------------------YKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELN 204 (896)
T ss_pred cccCceEEEEeCCCCHHHHHHH-----------------------hCCCEEEECChhhhHHHHhcCCccchHhhhccccc
Confidence 9999999999999876655322 2469999999999 999887534433 5799
Q ss_pred EEEEcchhHHHHH----------------HHHhHHHHHHhhcccCc---------------ccccCCcc-----cc----
Q 010196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDN---------------ENRFSDAS-----TF---- 239 (515)
Q Consensus 200 ~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~~---------------~~~~~~~~-----~~---- 239 (515)
++|+||||.|+-+ .....+..+...+.... ...+++.+ .+
T Consensus 205 ~~IvDEaDsiLIDeArtPLIISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~ 284 (896)
T PRK13104 205 FAIVDEVDSILIDEARTPLIISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKA 284 (896)
T ss_pred eEEeccHhhhhhhccCCceeeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhC
Confidence 9999999997532 11222222222222110 00000000 00
Q ss_pred --c---cccccc-----hhhh----h-----cc---------------------ccccCCCC------------CCCCc-
Q 010196 240 --L---PSAFGS-----LKTI----R-----RC---------------------GVERGFKD------------KPYPR- 266 (515)
Q Consensus 240 --~---~~~~~~-----~~~~----~-----~~---------------------~~~~~~~~------------~~~~~- 266 (515)
+ ...+.. ...+ + .. ...+.+.. ..-+.
T Consensus 285 ~il~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~ 364 (896)
T PRK13104 285 KLLDPGESLYHASNIMLMHHVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNEN 364 (896)
T ss_pred CccCCcccccCchhhhHHHHHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCc
Confidence 0 000000 0000 0 00 00000000 00000
Q ss_pred ---------------eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHH--h
Q 010196 267 ---------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--S 329 (515)
Q Consensus 267 ---------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~ 329 (515)
....+||+|......++...+-.+.+.+.+.. +....-..-.+......|...+.+.+. .
T Consensus 365 ~t~AsIT~Qn~Fr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPtnk---p~~R~d~~d~v~~t~~~k~~av~~~i~~~~ 441 (896)
T PRK13104 365 QTLASITFQNFFRMYNKLSGMTGTADTEAYEFQQIYNLEVVVIPTNR---SMIRKDEADLVYLTQADKFQAIIEDVRECG 441 (896)
T ss_pred eeeeeehHHHHHHhcchhccCCCCChhHHHHHHHHhCCCEEECCCCC---CcceecCCCeEEcCHHHHHHHHHHHHHHHH
Confidence 01234444443333333332222222222211 111111112233445566666766664 3
Q ss_pred cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCC------
Q 010196 330 LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG------ 403 (515)
Q Consensus 330 ~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~------ 403 (515)
..+.|+||||+|+..++.+++.|...+ ++...+|+.+.+.+|+.+.+.|+.| .|+|||++++||+||.=
T Consensus 442 ~~g~PVLVgt~Sie~sE~ls~~L~~~g---i~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~ 516 (896)
T PRK13104 442 VRKQPVLVGTVSIEASEFLSQLLKKEN---IKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAA 516 (896)
T ss_pred hCCCCEEEEeCcHHHHHHHHHHHHHcC---CCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhh
Confidence 468899999999999999999999877 8999999999999999999999999 59999999999999861
Q ss_pred --------------------------------CCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 404 --------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 404 --------------------------------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
==+||-...+.|.+--.|..||+||.|.+|.+.+|++-+|
T Consensus 517 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRaGRQGDPGss~f~lSleD 588 (896)
T PRK13104 517 DLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 588 (896)
T ss_pred hhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 1278888889999999999999999999999999998776
No 86
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=261.98 Aligned_cols=353 Identities=21% Similarity=0.274 Sum_probs=251.0
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-------CcccEEEE
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-------RCLRALVV 107 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-------~~~~~lil 107 (515)
++.+-..++. |...+.++|......++. ...|+++|||||+|||-++++-+++.+..+.. ...+++|+
T Consensus 296 lP~Wnq~aF~--g~~sLNrIQS~v~daAl~---~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYI 370 (1674)
T KOG0951|consen 296 LPKWNQPAFF--GKQSLNRIQSKVYDAALR---GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYI 370 (1674)
T ss_pred Ccchhhhhcc--cchhhhHHHHHHHHHHhc---CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEE
Confidence 5555555554 455699999998766542 46899999999999999999999999977532 24579999
Q ss_pred cccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHH
Q 010196 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (515)
Q Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 187 (515)
+|..+|++.|...|.+.+..+|++|...+|+.......- ++..|+|+||+.. +.+
T Consensus 371 APmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qi------------------------eeTqVIV~TPEK~-DiI 425 (1674)
T KOG0951|consen 371 APMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQI------------------------EETQVIVTTPEKW-DII 425 (1674)
T ss_pred eeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhh------------------------hcceeEEeccchh-hhh
Confidence 999999999999999999999999999999977544321 3569999999996 444
Q ss_pred hcC-cCC-CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCC
Q 010196 188 NAT-RGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYP 265 (515)
Q Consensus 188 ~~~-~~~-~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (515)
.+. +.. ..+-++++|+||+| |+.+..+..++.+...+...... ...
T Consensus 426 TRk~gdraY~qlvrLlIIDEIH-LLhDdRGpvLESIVaRt~r~ses-------------------------------~~e 473 (1674)
T KOG0951|consen 426 TRKSGDRAYEQLVRLLIIDEIH-LLHDDRGPVLESIVARTFRRSES-------------------------------TEE 473 (1674)
T ss_pred hcccCchhHHHHHHHHhhhhhh-hcccccchHHHHHHHHHHHHhhh-------------------------------ccc
Confidence 432 211 13357899999999 46777888887776654322110 012
Q ss_pred ceeeEEEEEEecCCchh--hhhcccCCCeeEeeCCccccCCcccceeEEe--ccCCCcH------HHHHHHHHhcCCCeE
Q 010196 266 RLVKMVLSATLTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLI--CESKLKP------LYLVALLQSLGEEKC 335 (515)
Q Consensus 266 ~~~~i~~SaT~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~k~------~~l~~~l~~~~~~~~ 335 (515)
..+.+.+|||+|+-.+. +......+......+.. + ..+.+-++- .....+. ....+.++....+++
T Consensus 474 ~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syR--p--vPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qV 549 (1674)
T KOG0951|consen 474 GSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYR--P--VPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQV 549 (1674)
T ss_pred CceeeeecccCCchhhhHHHhccCcccccccCcccC--c--CCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcE
Confidence 34679999999864433 22323222222222222 2 222333222 2222222 334556677778999
Q ss_pred EEEcCChhhHHHHHHHHhhcC----------------------------------CCceeEEEccCccCHHHHHHHHHHH
Q 010196 336 IVFTSSVESTHRLCTLLNHFG----------------------------------ELRIKIKEYSGLQRQSVRSKTLKAF 381 (515)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~----------------------------------~~~~~v~~~~~~~~~~~r~~~l~~f 381 (515)
|||+.+++++.+.++.++... -+..+++++|++|+..+|....+.|
T Consensus 550 LVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf 629 (1674)
T KOG0951|consen 550 LVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLF 629 (1674)
T ss_pred EEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHH
Confidence 999999999988888876311 0235789999999999999999999
Q ss_pred hcCCceEEEecCCccccCCCCCCCEEEE----ccC------CCChhhhHHhhhhcccCCCC--ccEEEEeechhHHHHHH
Q 010196 382 REGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK------PAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKK 449 (515)
Q Consensus 382 ~~g~~~vLv~T~~~~~GiDi~~v~~VI~----~~~------p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d~~~~~~ 449 (515)
..|.++|+|+|..+++|+|+|.-+++|- |++ +.++.+.+||+||+||.+-+ |..+++-..++...+..
T Consensus 630 ~~g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls 709 (1674)
T KOG0951|consen 630 ADGHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLS 709 (1674)
T ss_pred hcCceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHH
Confidence 9999999999999999999996444442 443 34678899999999997654 78888877777766666
Q ss_pred HHHH
Q 010196 450 LLQK 453 (515)
Q Consensus 450 ~~~~ 453 (515)
+++.
T Consensus 710 ~mn~ 713 (1674)
T KOG0951|consen 710 LMNQ 713 (1674)
T ss_pred hhhh
Confidence 5443
No 87
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.97 E-value=4.1e-29 Score=258.41 Aligned_cols=330 Identities=17% Similarity=0.192 Sum_probs=252.2
Q ss_pred CCHHHHHHHH-hCCCCCcchhhHHHHHHHhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 35 LDPRLKVALQ-NMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 35 l~~~l~~~l~-~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
.+.+..+.+. .|+| +-||=|..||.++...+.++ .|=++|+..|-|||-+++=+++..+.++ .+|.|+|||.
T Consensus 579 ~d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~G----KQVAvLVPTT 653 (1139)
T COG1197 579 PDTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDG----KQVAVLVPTT 653 (1139)
T ss_pred CChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCC----CeEEEEcccH
Confidence 3444444444 3677 68999999999999887766 6789999999999999998888777665 4899999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcC
Q 010196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (515)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~ 190 (515)
-||+|.++.|++.+..+.++|..+.--.+..++.. +...+.+ ..||+|||. .++.
T Consensus 654 lLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~------------------il~~la~G~vDIvIGTH----rLL~-- 709 (1139)
T COG1197 654 LLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKE------------------ILKGLAEGKVDIVIGTH----RLLS-- 709 (1139)
T ss_pred HhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHH------------------HHHHHhcCCccEEEech----HhhC--
Confidence 99999999999999988999998877776655532 2233444 489999994 4443
Q ss_pred cCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 191 ~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
+.+.+.++.++||||-|++. -...+.++.+.. .+-++
T Consensus 710 kdv~FkdLGLlIIDEEqRFG-Vk~KEkLK~Lr~------------------------------------------~VDvL 746 (1139)
T COG1197 710 KDVKFKDLGLLIIDEEQRFG-VKHKEKLKELRA------------------------------------------NVDVL 746 (1139)
T ss_pred CCcEEecCCeEEEechhhcC-ccHHHHHHHHhc------------------------------------------cCcEE
Confidence 44678899999999999962 223344444432 23578
Q ss_pred EEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHH
Q 010196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (515)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (515)
-+|||+-+.....+-..+.+..++...+... ..++.+....+..--.+.+...+ ..++++-..+|.++..+.+++
T Consensus 747 TLSATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~T~V~~~d~~~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~ 821 (1139)
T COG1197 747 TLSATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVKTFVSEYDDLLIREAILREL--LRGGQVFYVHNRVESIEKKAE 821 (1139)
T ss_pred EeeCCCCcchHHHHHhcchhhhhccCCCCCC---cceEEEEecCChHHHHHHHHHHH--hcCCEEEEEecchhhHHHHHH
Confidence 8999999888887777777776665543221 11233322222211112222222 247888888999999999999
Q ss_pred HHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-ChhhhHHhhhhcccC
Q 010196 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYIHRAGRTARA 429 (515)
Q Consensus 351 ~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~-s~~~~~Qr~GR~gR~ 429 (515)
.|+++- +..++.+.||.|+..+-++++..|-+|+.+|||||.+.+.|||+|+++.+|.-+... -..++.|..||+||.
T Consensus 822 ~L~~LV-PEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS 900 (1139)
T COG1197 822 RLRELV-PEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRS 900 (1139)
T ss_pred HHHHhC-CceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCc
Confidence 999875 457899999999999999999999999999999999999999999999999876543 378999999999999
Q ss_pred CCCccEEEEeech
Q 010196 430 GQLGRCFTLLHKD 442 (515)
Q Consensus 430 g~~g~~~~~~~~~ 442 (515)
.+.+.|++++.+.
T Consensus 901 ~~~AYAYfl~p~~ 913 (1139)
T COG1197 901 NKQAYAYFLYPPQ 913 (1139)
T ss_pred cceEEEEEeecCc
Confidence 9999999999854
No 88
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=6.3e-29 Score=253.99 Aligned_cols=355 Identities=19% Similarity=0.193 Sum_probs=234.4
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHH-HHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIV-QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~-~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+|. .|++.|.-..- ...+.-|..+.||+|||+++.+|++ +.+ .+ ..+-|++||..||.|.++++..+
T Consensus 78 lg~-~~~dvQlig~l------~L~~G~Iaem~TGeGKTLva~lpa~l~aL-~G----~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 78 LGM-RHFDVQLIGGM------VLHEGKIAEMKTGEGKTLVATLPAYLNAL-TG----KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred hCC-CCCccHHHhhH------HhcCCchhhhhcCCCcHHHHHHHHHHHHH-cC----CCEEEEecCHHHHHHHHHHHHHH
Confidence 565 68888865532 2234459999999999999999996 444 32 25789999999999999999999
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcC-----CCCCcc
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHL 198 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~-----~~~~~~ 198 (515)
...+|++++++.|+.+..++... -.++|+++||+.| .++++.... .....+
T Consensus 146 ~~~LGlsv~~i~~~~~~~er~~~-----------------------y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~ 202 (830)
T PRK12904 146 YEFLGLSVGVILSGMSPEERREA-----------------------YAADITYGTNNEFGFDYLRDNMVFSLEERVQRGL 202 (830)
T ss_pred HhhcCCeEEEEcCCCCHHHHHHh-----------------------cCCCeEEECCcchhhhhhhcccccchhhhccccc
Confidence 99999999999999887665332 1369999999999 888876432 235678
Q ss_pred eEEEEcchhHHHHH----------------HHHhHHHHHHhhcccCccccc---------C--------------Ccc--
Q 010196 199 CYLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNENRF---------S--------------DAS-- 237 (515)
Q Consensus 199 ~~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~~~~~~---------~--------------~~~-- 237 (515)
.++|+||||.|+=+ .....+..+...+.....-.. + ...
T Consensus 203 ~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~ 282 (830)
T PRK12904 203 NYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDP 282 (830)
T ss_pred ceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccCh
Confidence 99999999997532 122222333332211100000 0 000
Q ss_pred ------ccccccccchhhhhc--------------------cccccCCCC------------CCCCc-------------
Q 010196 238 ------TFLPSAFGSLKTIRR--------------------CGVERGFKD------------KPYPR------------- 266 (515)
Q Consensus 238 ------~~~~~~~~~~~~~~~--------------------~~~~~~~~~------------~~~~~------------- 266 (515)
.....++.......+ ....+.+.+ ...+.
T Consensus 283 ~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~F 362 (830)
T PRK12904 283 ENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYF 362 (830)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHH
Confidence 000000000000000 000000000 00000
Q ss_pred ---eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCC
Q 010196 267 ---LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (515)
Q Consensus 267 ---~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s 341 (515)
....+||+|......++...+-.+.+.+++.. +.. ..-..-.+......|...+...+.. ..+.|+||||+|
T Consensus 363 r~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnk--p~~-r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~S 439 (830)
T PRK12904 363 RMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNR--PMI-RIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVS 439 (830)
T ss_pred HhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCC--Cee-eeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCc
Confidence 02345566654333333333322222222211 111 1111222334556688888888855 567899999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCC-----------------
Q 010196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV----------------- 404 (515)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v----------------- 404 (515)
+..++.+++.|...+ ++...+|+. +.+|+..+..|+.+...|+|||++++||+||+--
T Consensus 440 i~~se~Ls~~L~~~g---i~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~ 514 (830)
T PRK12904 440 IEKSELLSKLLKKAG---IPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEE 514 (830)
T ss_pred HHHHHHHHHHHHHCC---CceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhH
Confidence 999999999999876 889999996 7889999999999999999999999999999732
Q ss_pred ---------------------CEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 405 ---------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 405 ---------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
=+||-...|.|.+--.|..||+||.|.+|.+..|++-+|
T Consensus 515 ~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQGdpGss~f~lSleD 574 (830)
T PRK12904 515 QIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 574 (830)
T ss_pred HHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCCCCCceeEEEEcCc
Confidence 178888899999999999999999999999999998776
No 89
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=1.1e-29 Score=271.48 Aligned_cols=320 Identities=18% Similarity=0.226 Sum_probs=210.4
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
..|...-|+...- ..++..+..++.++++|+||||||.. +|.+..-... ....++++.-|.|--|..++..+.+..
T Consensus 60 ~~~~~~LPi~~~~-~~Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~-~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKR-EDIAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGR-GSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHH-HHHHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCC-CCCceEecCCccHHHHHHHHHHHHHHh
Confidence 4565556665532 34454445577889999999999984 5644322111 112234445587776666666555432
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
+..++..+|.....+. .....+.|.++|+|+|++.+.... .++.+++||+||
T Consensus 136 ---g~~lG~~VGY~vR~~~-----------------------~~s~~T~I~~~TdGiLLr~l~~d~--~L~~~~~IIIDE 187 (1283)
T TIGR01967 136 ---GTPLGEKVGYKVRFHD-----------------------QVSSNTLVKLMTDGILLAETQQDR--FLSRYDTIIIDE 187 (1283)
T ss_pred ---CCCcceEEeeEEcCCc-----------------------ccCCCceeeeccccHHHHHhhhCc--ccccCcEEEEcC
Confidence 3344444443211100 112346899999999999887643 378899999999
Q ss_pred hh-HHHHHHHHh-HHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhh
Q 010196 206 TD-RLLREAYQA-WLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL 283 (515)
Q Consensus 206 ah-~l~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~ 283 (515)
|| ++++.++.- .+..++... +..++++||||+. ...+
T Consensus 188 aHERsL~~D~LL~lLk~il~~r---------------------------------------pdLKlIlmSATld--~~~f 226 (1283)
T TIGR01967 188 AHERSLNIDFLLGYLKQLLPRR---------------------------------------PDLKIIITSATID--PERF 226 (1283)
T ss_pred cchhhccchhHHHHHHHHHhhC---------------------------------------CCCeEEEEeCCcC--HHHH
Confidence 99 476665542 233333221 2347899999994 4456
Q ss_pred hhcccCCCeeEeeCCccccCCcccceeEEeccC------CCcHHHHHHHHH---hcCCCeEEEEcCChhhHHHHHHHHhh
Q 010196 284 AQLDLHHPLFLTTGETRYKLPERLESYKLICES------KLKPLYLVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNH 354 (515)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~k~~~l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (515)
...+...|.+... ...+++ +.++..... ..+...+...+. ....+.+|||+++..+++.+++.|..
T Consensus 227 a~~F~~apvI~V~-Gr~~PV----ev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~ 301 (1283)
T TIGR01967 227 SRHFNNAPIIEVS-GRTYPV----EVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRK 301 (1283)
T ss_pred HHHhcCCCEEEEC-CCcccc----eeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHh
Confidence 6655555543322 222221 222221111 112233333332 22467899999999999999999987
Q ss_pred cCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC------------------CCh
Q 010196 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------------------AYI 416 (515)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p------------------~s~ 416 (515)
.+..+..+..+||++++.+|..+++.+ +..+|||||+++++|+|+|++++||+++++ .|.
T Consensus 302 ~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISk 379 (1283)
T TIGR01967 302 RNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQ 379 (1283)
T ss_pred cCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCH
Confidence 654456789999999999999886654 246999999999999999999999999854 355
Q ss_pred hhhHHhhhhcccCCCCccEEEEeechhHHH
Q 010196 417 KTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (515)
Q Consensus 417 ~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 446 (515)
.+|.||.||+||.| +|.|+.++++.+...
T Consensus 380 asa~QRaGRAGR~~-~G~cyRLyte~~~~~ 408 (1283)
T TIGR01967 380 ASANQRKGRCGRVA-PGICIRLYSEEDFNS 408 (1283)
T ss_pred HHHHHHhhhhCCCC-CceEEEecCHHHHHh
Confidence 79999999999997 999999999887543
No 90
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=1.7e-29 Score=253.05 Aligned_cols=289 Identities=19% Similarity=0.203 Sum_probs=188.9
Q ss_pred EEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccC
Q 010196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRP 152 (515)
Q Consensus 73 ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (515)
++.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.+ +.++..++|+.+..+...
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~----g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~------ 67 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL----GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQ------ 67 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHH------
Confidence 478999999999998766655544 3379999999999999999998764 567888888877665533
Q ss_pred cccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHH------hHHHHHHhhc
Q 010196 153 KLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ------AWLPTVLQLT 225 (515)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~------~~~~~i~~~~ 225 (515)
.|..+. ..++|+|+|+..++ ..+.++++||+||+|...-.+.. ..+..+...
T Consensus 68 ------------~~~~~~~g~~~IVVGTrsalf--------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~- 126 (505)
T TIGR00595 68 ------------AWRKVKNGEILVVIGTRSALF--------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK- 126 (505)
T ss_pred ------------HHHHHHcCCCCEEECChHHHc--------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH-
Confidence 233333 34799999988663 23678899999999975321110 001111111
Q ss_pred ccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeC--CccccC
Q 010196 226 RSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG--ETRYKL 303 (515)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 303 (515)
....+++++|||++.+....+... ....+... ......
T Consensus 127 --------------------------------------~~~~~vil~SATPsles~~~~~~g--~~~~~~l~~r~~~~~~ 166 (505)
T TIGR00595 127 --------------------------------------KFNCPVVLGSATPSLESYHNAKQK--AYRLLVLTRRVSGRKP 166 (505)
T ss_pred --------------------------------------hcCCCEEEEeCCCCHHHHHHHhcC--CeEEeechhhhcCCCC
Confidence 123478999999764333222211 11111111 000011
Q ss_pred CcccceeEEeccCC----CcHHHHHHHHHh-c-CCCeEEEEcCChhh---------------------------------
Q 010196 304 PERLESYKLICESK----LKPLYLVALLQS-L-GEEKCIVFTSSVES--------------------------------- 344 (515)
Q Consensus 304 ~~~~~~~~~~~~~~----~k~~~l~~~l~~-~-~~~~~lVf~~s~~~--------------------------------- 344 (515)
+. ++ .+..... .-...+.+.+.+ . .++++|||+|++..
T Consensus 167 p~-v~--vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~C 243 (505)
T TIGR00595 167 PE-VK--LIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRC 243 (505)
T ss_pred Ce-EE--EEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEc
Confidence 10 11 1111111 111234444432 2 36689999776432
Q ss_pred ---------------------------HHHHHHHHhhcCCCceeEEEccCccCHHHH--HHHHHHHhcCCceEEEecCCc
Q 010196 345 ---------------------------THRLCTLLNHFGELRIKIKEYSGLQRQSVR--SKTLKAFREGKIQVLVSSDAM 395 (515)
Q Consensus 345 ---------------------------~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r--~~~l~~f~~g~~~vLv~T~~~ 395 (515)
++.+.+.|.... .+.++..+|++++...+ +++++.|++|+.+|||+|+++
T Consensus 244 h~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f-p~~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i 322 (505)
T TIGR00595 244 HYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF-PGARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMI 322 (505)
T ss_pred CCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC-CCCcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCccc
Confidence 477777777653 34789999999987665 899999999999999999999
Q ss_pred cccCCCCCCCEEEEccCC------C------ChhhhHHhhhhcccCCCCccEEEEe
Q 010196 396 TRGMDVEGVNNVVNYDKP------A------YIKTYIHRAGRTARAGQLGRCFTLL 439 (515)
Q Consensus 396 ~~GiDi~~v~~VI~~~~p------~------s~~~~~Qr~GR~gR~g~~g~~~~~~ 439 (515)
++|+|+|++++|+.++.. . ....|+|++||+||.+..|.+++..
T Consensus 323 ~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g~viiqt 378 (505)
T TIGR00595 323 AKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPGQVIIQT 378 (505)
T ss_pred ccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCCEEEEEe
Confidence 999999999988654432 1 1356899999999999999988654
No 91
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.97 E-value=1e-28 Score=251.38 Aligned_cols=356 Identities=20% Similarity=0.239 Sum_probs=227.2
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|++.|.-+--.+ ...-|.++.||+|||+++.+|++-....+. .+-+++||.-||.|-++++..+.
T Consensus 77 ~g~-~~~dvQlig~l~l------~~G~iaEm~TGEGKTLvA~l~a~l~al~G~----~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 77 LGL-RPFDVQIIGGIVL------HEGNIAEMKTGEGKTLTATLPVYLNALTGK----GVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred hCC-CCchhHHHHHHHH------hcCCcccccCCCCCcHHHHHHHHHHHHcCC----CeEEEeccHHHHHhhHHHHHHHH
Confidence 565 6889997653221 333499999999999999999887776643 79999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcC-----CCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (515)
..+|++|+++.++.+..+.... -.++|+++|...| .++|+..-. .....+.
T Consensus 146 ~~LGl~vg~i~~~~~~~~r~~~-----------------------y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~ 202 (796)
T PRK12906 146 RWLGLTVGLNLNSMSPDEKRAA-----------------------YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLN 202 (796)
T ss_pred HhcCCeEEEeCCCCCHHHHHHH-----------------------hcCCCeecCCccccccchhhccccchhhhhccCcc
Confidence 9999999999998766554322 2459999998776 344433211 1235688
Q ss_pred EEEEcchhHHHHH----------------HHHhHHHHHHhhcccCcc---------ccc-----------CCc-----cc
Q 010196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNE---------NRF-----------SDA-----ST 238 (515)
Q Consensus 200 ~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~~~---------~~~-----------~~~-----~~ 238 (515)
+.|+||+|.++=+ .....+..+...+..... ..+ ++. ..
T Consensus 203 ~aIvDEvDSiLiDeartPLiisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~ 282 (796)
T PRK12906 203 YAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEK 282 (796)
T ss_pred eeeeccchheeeccCCCceecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHH
Confidence 9999999986421 111122222222111100 000 000 00
Q ss_pred c--ccccccc-----hhhhh---------cccc---------------------ccCCCC------------CCCCc---
Q 010196 239 F--LPSAFGS-----LKTIR---------RCGV---------------------ERGFKD------------KPYPR--- 266 (515)
Q Consensus 239 ~--~~~~~~~-----~~~~~---------~~~~---------------------~~~~~~------------~~~~~--- 266 (515)
+ .+..+.. ...+. ..+. .+.+.. ..-+.
T Consensus 283 ~~~i~~l~~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t 362 (796)
T PRK12906 283 LFGLDNLYDSENTALAHHIDQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQT 362 (796)
T ss_pred HcCCccccCchhhhHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCcee
Confidence 0 0000000 00000 0000 000000 00000
Q ss_pred -------------eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc--C
Q 010196 267 -------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--G 331 (515)
Q Consensus 267 -------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~ 331 (515)
.+..+||+|......++...+-.+.+.+++. .+.. ..-..-.+......|...+...+... .
T Consensus 363 ~a~It~qnfFr~Y~kl~GmTGTa~~e~~Ef~~iY~l~vv~IPtn--kp~~-r~d~~d~i~~t~~~K~~al~~~i~~~~~~ 439 (796)
T PRK12906 363 LATITYQNFFRMYKKLSGMTGTAKTEEEEFREIYNMEVITIPTN--RPVI-RKDSPDLLYPTLDSKFNAVVKEIKERHAK 439 (796)
T ss_pred eeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCCCEEEcCCC--CCee-eeeCCCeEEcCHHHHHHHHHHHHHHHHhC
Confidence 0133455554333333332222221121111 1000 00111123334456777788877543 6
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCC---CCC---
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE---GVN--- 405 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~---~v~--- 405 (515)
+.|+||||+|+..++.+++.|.+.+ ++...+|+++...++..+.++++.|. |+|||++++||+||+ ++.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~g---i~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAG---IPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCC---CCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhC
Confidence 8899999999999999999999876 88999999999888888888777774 999999999999995 788
Q ss_pred --EEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 406 --NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 406 --~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
+||+++.|.|.+.|.|+.||+||.|.+|.+.+|++.+|
T Consensus 515 GLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 515 GLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred CcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEeccc
Confidence 99999999999999999999999999999999999876
No 92
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=3.7e-28 Score=261.18 Aligned_cols=315 Identities=20% Similarity=0.209 Sum_probs=194.2
Q ss_pred CcchhhHHHHHHHhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
.+|++|.+|+..+...+..+ +++++++|||||||++++. ++..+.+. ....++|||+|+++|+.|+.+.|+.+....
T Consensus 413 ~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~-li~~L~~~-~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~ 490 (1123)
T PRK11448 413 GLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIA-LMYRLLKA-KRFRRILFLVDRSALGEQAEDAFKDTKIEG 490 (1123)
T ss_pred CCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHH-HHHHHHhc-CccCeEEEEecHHHHHHHHHHHHHhccccc
Confidence 58999999998887655444 6799999999999998554 44444432 233589999999999999999999874322
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC----cCCCCCcceEEEEc
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVVD 204 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~----~~~~~~~~~~vViD 204 (515)
...+..+++.....+. .......|+|+|++.|...+... ..+.+..+++||+|
T Consensus 491 ~~~~~~i~~i~~L~~~-----------------------~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiD 547 (1123)
T PRK11448 491 DQTFASIYDIKGLEDK-----------------------FPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVD 547 (1123)
T ss_pred ccchhhhhchhhhhhh-----------------------cccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEE
Confidence 2111111111100000 01123589999999998765321 11456789999999
Q ss_pred chhHHHH---------HH------HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceee
Q 010196 205 ETDRLLR---------EA------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (515)
Q Consensus 205 Eah~l~~---------~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (515)
|||+... .+ +...+..++..+ ....
T Consensus 548 EaHRs~~~d~~~~~~~~~~~~~~~~~~~yr~iL~yF----------------------------------------dA~~ 587 (1123)
T PRK11448 548 EAHRGYTLDKEMSEGELQFRDQLDYVSKYRRVLDYF----------------------------------------DAVK 587 (1123)
T ss_pred CCCCCCccccccccchhccchhhhHHHHHHHHHhhc----------------------------------------CccE
Confidence 9998521 00 012223333221 1145
Q ss_pred EEEEEEecCCchhhhhc--------------ccC---CCeeEeeCCccc----cCCcccceeE-----Ee---ccC----
Q 010196 270 MVLSATLTQDPNKLAQL--------------DLH---HPLFLTTGETRY----KLPERLESYK-----LI---CES---- 316 (515)
Q Consensus 270 i~~SaT~~~~~~~~~~~--------------~~~---~~~~~~~~~~~~----~~~~~~~~~~-----~~---~~~---- 316 (515)
+++|||+......+... .+. .|..+....... .....+..+. +. ...
T Consensus 588 IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~~~~~i~~~~l~d~~~~ 667 (1123)
T PRK11448 588 IGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINTQTGEIDLATLEDEVDF 667 (1123)
T ss_pred EEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcchhhhhhhhccCcHHHhh
Confidence 88888886433221110 111 122222110000 0000000000 00 000
Q ss_pred -----------CCcHHH----HHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcC-----C-CceeEEEccCccCHHHHH
Q 010196 317 -----------KLKPLY----LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-----E-LRIKIKEYSGLQRQSVRS 375 (515)
Q Consensus 317 -----------~~k~~~----l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-----~-~~~~v~~~~~~~~~~~r~ 375 (515)
...... +...+....++|+||||.++.+|+.+.+.|.+.. . .+..+..+||+++ ++.
T Consensus 668 ~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~ 745 (1123)
T PRK11448 668 EVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPD 745 (1123)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chH
Confidence 000011 1122222235799999999999999999886531 1 1224566888875 467
Q ss_pred HHHHHHhcCCc-eEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCC
Q 010196 376 KTLKAFREGKI-QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (515)
Q Consensus 376 ~~l~~f~~g~~-~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 431 (515)
++++.|++++. .|+|+++++.+|+|+|.+++||.++++.|...|+|++||+.|...
T Consensus 746 ~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~ 802 (1123)
T PRK11448 746 QLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCP 802 (1123)
T ss_pred HHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCc
Confidence 89999999876 689999999999999999999999999999999999999999743
No 93
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.3e-27 Score=240.17 Aligned_cols=146 Identities=18% Similarity=0.263 Sum_probs=122.4
Q ss_pred CCCHHHHHHHH-----hCCCCCc---chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEE
Q 010196 34 CLDPRLKVALQ-----NMGISSL---FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRAL 105 (515)
Q Consensus 34 ~l~~~l~~~l~-----~~~~~~~---~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~l 105 (515)
++.+++.+.+. .+||..| +|+|.++++.+ ..+++++++++||+|||++|++|++..+..+. .++
T Consensus 68 al~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i----~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~----~v~ 139 (970)
T PRK12899 68 GVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAI----AMHKGFITEMQTGEGKTLTAVMPLYLNALTGK----PVH 139 (970)
T ss_pred CCCHHHHHHHhccccccccccCCCCCChHHHHHhhhh----hcCCCeEEEeCCCCChHHHHHHHHHHHHhhcC----CeE
Confidence 47778888877 5789888 99999996655 45899999999999999999999998776532 489
Q ss_pred EEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-H
Q 010196 106 VVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-M 184 (515)
Q Consensus 106 il~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~ 184 (515)
||+||++||.|.++++..+...+++++++++|+.+...+... -.++|+|+||++| +
T Consensus 140 IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~-----------------------y~~DIVygTPgRLgf 196 (970)
T PRK12899 140 LVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEI-----------------------YQCDVVYGTASEFGF 196 (970)
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHH-----------------------cCCCEEEECCChhHH
Confidence 999999999999999999999999999999999987766432 1479999999999 9
Q ss_pred HHHhcCcCCCCC-------cceEEEEcchhHHHH
Q 010196 185 DHINATRGFTLE-------HLCYLVVDETDRLLR 211 (515)
Q Consensus 185 ~~l~~~~~~~~~-------~~~~vViDEah~l~~ 211 (515)
+++.. +.+.++ .+.++|+||||.|+-
T Consensus 197 DyLrd-~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 197 DYLRD-NSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred HHhhC-CCCCcCHHHhhcccccEEEEechhhhhh
Confidence 99886 333333 568999999999864
No 94
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.96 E-value=7.4e-28 Score=239.81 Aligned_cols=314 Identities=18% Similarity=0.193 Sum_probs=221.4
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
...| +|-.+|++|+.++ .+|..|++.|+|.+|||+++-.++.-.- ....+++|.+|-++|.+|-++.|+..
T Consensus 293 ~~pF-elD~FQk~Ai~~l----erg~SVFVAAHTSAGKTvVAEYAialaq----~h~TR~iYTSPIKALSNQKfRDFk~t 363 (1248)
T KOG0947|consen 293 IYPF-ELDTFQKEAIYHL----ERGDSVFVAAHTSAGKTVVAEYAIALAQ----KHMTRTIYTSPIKALSNQKFRDFKET 363 (1248)
T ss_pred hCCC-CccHHHHHHHHHH----HcCCeEEEEecCCCCcchHHHHHHHHHH----hhccceEecchhhhhccchHHHHHHh
Confidence 3566 7999999997765 4699999999999999999766544222 23558999999999999999999987
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEc
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (515)
+.. +++++|+... ...+.++|+|.+.|..++.++..+ .+++.+||+|
T Consensus 364 F~D----vgLlTGDvqi----------------------------nPeAsCLIMTTEILRsMLYrgadl-iRDvE~VIFD 410 (1248)
T KOG0947|consen 364 FGD----VGLLTGDVQI----------------------------NPEASCLIMTTEILRSMLYRGADL-IRDVEFVIFD 410 (1248)
T ss_pred ccc----cceeecceee----------------------------CCCcceEeehHHHHHHHHhcccch-hhccceEEEe
Confidence 654 3478888653 244589999999999999885444 7789999999
Q ss_pred chhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhh
Q 010196 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (515)
Q Consensus 205 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 284 (515)
|+|.+-|...+-.+++++=+++ ..+++|++|||+++.....-
T Consensus 411 EVHYiND~eRGvVWEEViIMlP--------------------------------------~HV~~IlLSATVPN~~EFA~ 452 (1248)
T KOG0947|consen 411 EVHYINDVERGVVWEEVIIMLP--------------------------------------RHVNFILLSATVPNTLEFAD 452 (1248)
T ss_pred eeeecccccccccceeeeeecc--------------------------------------ccceEEEEeccCCChHHHHH
Confidence 9999877777777777665554 34578999999976533211
Q ss_pred hc--ccCCCeeEeeCCccccCCccccee----------------------------------------------------
Q 010196 285 QL--DLHHPLFLTTGETRYKLPERLESY---------------------------------------------------- 310 (515)
Q Consensus 285 ~~--~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------- 310 (515)
+. .-..-..+.....+ ++ .++++
T Consensus 453 WIGRtK~K~IyViST~kR-PV--PLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ 529 (1248)
T KOG0947|consen 453 WIGRTKQKTIYVISTSKR-PV--PLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKR 529 (1248)
T ss_pred HhhhccCceEEEEecCCC-cc--ceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccccccccccccccccc
Confidence 11 11111111000000 00 00000
Q ss_pred -----EE-------eccC-CCc---HHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCC-----------------
Q 010196 311 -----KL-------ICES-KLK---PLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE----------------- 357 (515)
Q Consensus 311 -----~~-------~~~~-~~k---~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~----------------- 357 (515)
.. -... ..+ ...++..++..+--|++|||-+++.|++.+++|....-
T Consensus 530 ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~ 609 (1248)
T KOG0947|consen 530 GGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAV 609 (1248)
T ss_pred CCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 00 0000 011 22334444444566999999999999999999965320
Q ss_pred -------------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC-----
Q 010196 358 -------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP----- 413 (515)
Q Consensus 358 -------------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p----- 413 (515)
....++++||++-+--++-+.-.|..|-++||+||..+++|+|.|. ++||.-.+.
T Consensus 610 ~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPA-RtvVF~Sl~KhDG~ 688 (1248)
T KOG0947|consen 610 ARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPA-RTVVFSSLRKHDGN 688 (1248)
T ss_pred HhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCc-eeEEeeehhhccCc
Confidence 1236889999999999999999999999999999999999999995 444443332
Q ss_pred ----CChhhhHHhhhhcccCCCC--ccEEEEeech
Q 010196 414 ----AYIKTYIHRAGRTARAGQL--GRCFTLLHKD 442 (515)
Q Consensus 414 ----~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 442 (515)
-.+..|.|++|||||.|-+ |.+++++...
T Consensus 689 efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 689 EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred ceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 2477899999999999977 7777776544
No 95
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=8.3e-28 Score=216.18 Aligned_cols=196 Identities=31% Similarity=0.507 Sum_probs=165.1
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc-cCcccEEEEcccHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDL 113 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L 113 (515)
+++.+.+.|.++|+..|+++|.++++.+.. ++|+++.+|||+|||++|++|+++.+.... ..+++++|++|+++|
T Consensus 6 ~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~----~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L 81 (203)
T cd00268 6 LSPELLRGIYALGFEKPTPIQARAIPPLLS----GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTREL 81 (203)
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHH
Confidence 999999999999999999999999988764 899999999999999999999999988752 246789999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|+.+.++.+....++.+..++|+.+..+.... +..+++|+|+||+.+.+++.+. ..
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~iiv~T~~~l~~~l~~~-~~ 139 (203)
T cd00268 82 ALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRK---------------------LKRGPHIVVATPGRLLDLLERG-KL 139 (203)
T ss_pred HHHHHHHHHHHhccCCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEEChHHHHHHHHcC-CC
Confidence 9999999999988778899999998876554322 2346799999999999988864 46
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.+++++|+||+|.+.+.++...+..+...+.. ..+.+++|
T Consensus 140 ~~~~l~~lIvDE~h~~~~~~~~~~~~~~~~~l~~--------------------------------------~~~~~~~S 181 (203)
T cd00268 140 DLSKVKYLVLDEADRMLDMGFEDQIREILKLLPK--------------------------------------DRQTLLFS 181 (203)
T ss_pred ChhhCCEEEEeChHHhhccChHHHHHHHHHhCCc--------------------------------------ccEEEEEe
Confidence 7888999999999999888888888877776542 23789999
Q ss_pred EEecCCchhhhhcccCCCeeE
Q 010196 274 ATLTQDPNKLAQLDLHHPLFL 294 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~ 294 (515)
||+++.........+.+|..+
T Consensus 182 AT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 182 ATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred ccCCHHHHHHHHHHCCCCEEe
Confidence 999988777777777777654
No 96
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.96 E-value=4.2e-27 Score=240.00 Aligned_cols=356 Identities=17% Similarity=0.208 Sum_probs=230.8
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|++.|. +..+...+.-|.+++||.|||+++.+|++.....+. .+.||+|+..||.|.++++..+.
T Consensus 79 lgm-~~ydVQl------iGgl~L~~G~IaEm~TGEGKTL~a~lp~~l~al~g~----~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 79 FEM-RHFDVQL------LGGMVLDSNRIAEMRTGEGKTLTATLPAYLNALTGK----GVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred hCC-CcCchHH------hcchHhcCCccccccCCCCchHHHHHHHHHHHhcCC----CEEEEeCCHHHHHHHHHHHHHHH
Confidence 455 6888885 334444667799999999999999999987776543 59999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcCCCC-----Ccce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRGFTL-----EHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~~~~-----~~~~ 199 (515)
..+|++|+++.++.+..+... .-.++|+++||+.| +++++..-.+.. ..+.
T Consensus 148 ~~lGlsv~~i~~~~~~~~r~~-----------------------~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~ 204 (908)
T PRK13107 148 EFLGLTVGINVAGLGQQEKKA-----------------------AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLH 204 (908)
T ss_pred HhcCCeEEEecCCCCHHHHHh-----------------------cCCCCeEEeCCCcccchhhhccCccchhhhhccccc
Confidence 999999999999887544321 12579999999999 888876433332 6789
Q ss_pred EEEEcchhHHHHHH----------------HHhHHHHHHhhcccCc---------ccc-----------cCCcc-----c
Q 010196 200 YLVVDETDRLLREA----------------YQAWLPTVLQLTRSDN---------ENR-----------FSDAS-----T 238 (515)
Q Consensus 200 ~vViDEah~l~~~~----------------~~~~~~~i~~~~~~~~---------~~~-----------~~~~~-----~ 238 (515)
++|+||||.++-+. ....+..+...+.... ... +++.+ .
T Consensus 205 ~aIvDEvDsiLiDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~ 284 (908)
T PRK13107 205 YALIDEVDSILIDEARTPLIISGAAEDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVEN 284 (908)
T ss_pred eeeecchhhhccccCCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHH
Confidence 99999999976421 1111222222111100 000 00000 0
Q ss_pred cc---------cccccc-----h----------hhhhc--------------------cccccCCCC------------C
Q 010196 239 FL---------PSAFGS-----L----------KTIRR--------------------CGVERGFKD------------K 262 (515)
Q Consensus 239 ~~---------~~~~~~-----~----------~~~~~--------------------~~~~~~~~~------------~ 262 (515)
++ ...+.. . ..+.+ ....+.+.+ .
T Consensus 285 ~l~~~~~~~~~~~l~~~~~~~~~~~i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~ 364 (908)
T PRK13107 285 LLIERGMLAEGDSLYSAANISLLHHVNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVH 364 (908)
T ss_pred HHHhCCcccCcccccCchhhHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCC
Confidence 00 000000 0 00000 000000000 0
Q ss_pred CCCc----------------eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHH
Q 010196 263 PYPR----------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (515)
Q Consensus 263 ~~~~----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (515)
.-+. ....+||+|......++...+--+.+.+.+... .. ..-..-.+......|...+.+.
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~Vv~IPTnkp--~~-R~d~~d~iy~t~~~K~~Aii~e 441 (908)
T PRK13107 365 IQNENQTLASITFQNYFRQYEKLAGMTGTADTEAFEFQHIYGLDTVVVPTNRP--MV-RKDMADLVYLTADEKYQAIIKD 441 (908)
T ss_pred CCCCceeeeeehHHHHHHhhhHhhcccCCChHHHHHHHHHhCCCEEECCCCCC--cc-ceeCCCcEEeCHHHHHHHHHHH
Confidence 0000 012344555443333333322222222221110 00 0011112233345566666665
Q ss_pred HHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCC-
Q 010196 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEG- 403 (515)
Q Consensus 327 l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~- 403 (515)
+.. ..+.++||||+|+..++.++..|...+ ++...+|+.+++.++..+.+.|+.|. |+|||++++||+||.=
T Consensus 442 i~~~~~~GrpVLV~t~sv~~se~ls~~L~~~g---i~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLg 516 (908)
T PRK13107 442 IKDCRERGQPVLVGTVSIEQSELLARLMVKEK---IPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLG 516 (908)
T ss_pred HHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCC---CCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecC
Confidence 553 357899999999999999999999876 88999999999999999999999997 9999999999999861
Q ss_pred ------------------------------------CCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 404 ------------------------------------VNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 404 ------------------------------------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
=-+||-...+.|.+--.|..||+||.|.+|.+.+|++-+|
T Consensus 517 gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaGRQGDPGss~f~lSlED 592 (908)
T PRK13107 517 GNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAGRQGDAGSSRFYLSMED 592 (908)
T ss_pred CchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccccCCCCCceeEEEEeCc
Confidence 1278888899999999999999999999999999999776
No 97
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=2e-27 Score=250.67 Aligned_cols=359 Identities=19% Similarity=0.201 Sum_probs=216.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+++|||.+++.+++.....+.+.|++..+|.|||+..+. ++..+.........+|||||. ++..||.+++.++++.
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIa-lL~~L~~~~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~-- 244 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTIS-LLGYLHEYRGITGPHMVVAPK-STLGNWMNEIRRFCPV-- 244 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHH-HHHHHHHhcCCCCCEEEEeCh-HHHHHHHHHHHHHCCC--
Confidence 699999999998876555688899999999999998654 444444322233468999997 7778999999999874
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
+++..++|............ .....++|+|+|++.+...... +.--.+++||+||||++
T Consensus 245 l~v~~~~G~~~eR~~~~~~~------------------~~~~~~dVvITSYe~l~~e~~~---L~k~~W~~VIvDEAHrI 303 (1033)
T PLN03142 245 LRAVKFHGNPEERAHQREEL------------------LVAGKFDVCVTSFEMAIKEKTA---LKRFSWRYIIIDEAHRI 303 (1033)
T ss_pred CceEEEeCCHHHHHHHHHHH------------------hcccCCCcceecHHHHHHHHHH---hccCCCCEEEEcCcccc
Confidence 56677777544322211100 0123479999999998664332 22235789999999997
Q ss_pred HHHHHHhHHHHHHhhcccC-------c--ccccCC----ccccccccccchhhh----------------------hccc
Q 010196 210 LREAYQAWLPTVLQLTRSD-------N--ENRFSD----ASTFLPSAFGSLKTI----------------------RRCG 254 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~-------~--~~~~~~----~~~~~~~~~~~~~~~----------------------~~~~ 254 (515)
-+... .+...+..+... + .+...+ ..-..|..+...... ....
T Consensus 304 KN~~S--klskalr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf 381 (1033)
T PLN03142 304 KNENS--LLSKTMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPF 381 (1033)
T ss_pred CCHHH--HHHHHHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHH
Confidence 54321 111222221111 0 000000 000111111111000 0000
Q ss_pred cccCCCC---CCCCceeeEEEEEEecCCchhhhh---------------------------cccCCCeeEeeCCccccCC
Q 010196 255 VERGFKD---KPYPRLVKMVLSATLTQDPNKLAQ---------------------------LDLHHPLFLTTGETRYKLP 304 (515)
Q Consensus 255 ~~~~~~~---~~~~~~~~i~~SaT~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~ 304 (515)
..+..+. ...|......+...++.....+.. ....+|..+....... +
T Consensus 382 ~LRR~KsdV~~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~--~ 459 (1033)
T PLN03142 382 LLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGP--P 459 (1033)
T ss_pred HhhhhHHHHhhhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccC--c
Confidence 0000000 011221222222222211111100 0111121111000000 0
Q ss_pred cccceeEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHh
Q 010196 305 ERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (515)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~ 382 (515)
. ...........|...|..++... .+.++|||+......+.|.++|...+ +.++.++|+++..+|..+++.|+
T Consensus 460 ~--~~~e~lie~SgKl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g---~~y~rIdGsts~~eRq~~Id~Fn 534 (1033)
T PLN03142 460 Y--TTGEHLVENSGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRG---YQYCRIDGNTGGEDRDASIDAFN 534 (1033)
T ss_pred c--cchhHHhhhhhHHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHhc
Confidence 0 00001123456777777777654 46799999999999999999998765 88999999999999999999998
Q ss_pred cCC---ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE--EEEeech
Q 010196 383 EGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKD 442 (515)
Q Consensus 383 ~g~---~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 442 (515)
... ..+|++|.+++.|||+..+++||+||+||++....|++||++|.|+...| +.++...
T Consensus 535 ~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~g 599 (1033)
T PLN03142 535 KPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEY 599 (1033)
T ss_pred cccCCceEEEEeccccccCCchhhCCEEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCC
Confidence 643 45789999999999999999999999999999999999999999998554 4445544
No 98
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=9.7e-28 Score=248.20 Aligned_cols=323 Identities=20% Similarity=0.196 Sum_probs=233.0
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH
Q 010196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (515)
Q Consensus 40 ~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (515)
.......+| +|-++|++|+..+ .++.+|+++||||+|||.++-.++...+.++. +++|.+|.++|.+|.+.
T Consensus 110 ~~~~~~~~F-~LD~fQ~~a~~~L----er~esVlV~ApTssGKTvVaeyAi~~al~~~q----rviYTsPIKALsNQKyr 180 (1041)
T COG4581 110 APPAREYPF-ELDPFQQEAIAIL----ERGESVLVCAPTSSGKTVVAEYAIALALRDGQ----RVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CcHHHhCCC-CcCHHHHHHHHHH----hCCCcEEEEccCCCCcchHHHHHHHHHHHcCC----ceEeccchhhhhhhHHH
Confidence 334456788 7999999996554 56999999999999999998888777776643 69999999999999999
Q ss_pred HHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcce
Q 010196 120 VFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (515)
Q Consensus 120 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 199 (515)
++........--+++.+|+.+. ...+.++|+|.+.|.+++.++ ...+.++.
T Consensus 181 dl~~~fgdv~~~vGL~TGDv~I----------------------------N~~A~clvMTTEILRnMlyrg-~~~~~~i~ 231 (1041)
T COG4581 181 DLLAKFGDVADMVGLMTGDVSI----------------------------NPDAPCLVMTTEILRNMLYRG-SESLRDIE 231 (1041)
T ss_pred HHHHHhhhhhhhccceecceee----------------------------CCCCceEEeeHHHHHHHhccC-cccccccc
Confidence 9887654333346788887653 345689999999999999884 45688999
Q ss_pred EEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCC
Q 010196 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (515)
Q Consensus 200 ~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (515)
.||+||+|.|.+...+-..+.++-+++ ..++++++|||+++.
T Consensus 232 ~ViFDEvHyi~D~eRG~VWEE~Ii~lP--------------------------------------~~v~~v~LSATv~N~ 273 (1041)
T COG4581 232 WVVFDEVHYIGDRERGVVWEEVIILLP--------------------------------------DHVRFVFLSATVPNA 273 (1041)
T ss_pred eEEEEeeeeccccccchhHHHHHHhcC--------------------------------------CCCcEEEEeCCCCCH
Confidence 999999999998888888888887765 334789999999765
Q ss_pred chh--hhhcccCCCeeEeeCCccccCCcccceeEEe-------cc-----------------------------------
Q 010196 280 PNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLI-------CE----------------------------------- 315 (515)
Q Consensus 280 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~----------------------------------- 315 (515)
... +....-..|..+.....++. .+.++... .+
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~~Rpv---PL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~ 350 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTEHRPV---PLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRY 350 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeecCCCC---CeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccc
Confidence 433 22211233333322221110 01111000 00
Q ss_pred ------------CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcC-------------------------C-
Q 010196 316 ------------SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG-------------------------E- 357 (515)
Q Consensus 316 ------------~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-------------------------~- 357 (515)
...+...+...+...+..++|+|+-++..|+..+..+.... .
T Consensus 351 a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~ 430 (1041)
T COG4581 351 ARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDR 430 (1041)
T ss_pred cccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhh
Confidence 00011224444444556799999999999998888774210 0
Q ss_pred ------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC---------CCCh
Q 010196 358 ------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYI 416 (515)
Q Consensus 358 ------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~---------p~s~ 416 (515)
+...+.++|++|-+..|..+...|..|-.+|+++|.+++.|+|.|.-++|+ +.+ +-++
T Consensus 431 ~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~-~~l~K~dG~~~r~L~~ 509 (1041)
T COG4581 431 ELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVF-TSLSKFDGNGHRWLSP 509 (1041)
T ss_pred cCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceee-eeeEEecCCceeecCh
Confidence 112466899999999999999999999999999999999999999544444 332 3468
Q ss_pred hhhHHhhhhcccCCCC--ccEEEEeech
Q 010196 417 KTYIHRAGRTARAGQL--GRCFTLLHKD 442 (515)
Q Consensus 417 ~~~~Qr~GR~gR~g~~--g~~~~~~~~~ 442 (515)
..|.|+.|||||.|.+ |.++++..+.
T Consensus 510 gEy~QmsGRAGRRGlD~~G~vI~~~~~~ 537 (1041)
T COG4581 510 GEYTQMSGRAGRRGLDVLGTVIVIEPPF 537 (1041)
T ss_pred hHHHHhhhhhccccccccceEEEecCCC
Confidence 8999999999999987 7777774443
No 99
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.95 E-value=1.5e-26 Score=206.35 Aligned_cols=308 Identities=20% Similarity=0.210 Sum_probs=210.5
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+++|.|+.+-..++....+.++.+++|-||+|||... ...++...+ .|.++.+.+|....+-+++..++.-+. +
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~---~G~~vciASPRvDVclEl~~Rlk~aF~--~ 170 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN---QGGRVCIASPRVDVCLELYPRLKQAFS--N 170 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh---cCCeEEEecCcccchHHHHHHHHHhhc--c
Confidence 7999999998888877778899999999999999964 444444443 345899999999999999999998765 4
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
+.+.+++|+++...+ ..++|+|..+|+.+-. .++++|+||+|.+
T Consensus 171 ~~I~~Lyg~S~~~fr----------------------------~plvVaTtHQLlrFk~--------aFD~liIDEVDAF 214 (441)
T COG4098 171 CDIDLLYGDSDSYFR----------------------------APLVVATTHQLLRFKQ--------AFDLLIIDEVDAF 214 (441)
T ss_pred CCeeeEecCCchhcc----------------------------ccEEEEehHHHHHHHh--------hccEEEEeccccc
Confidence 677888998764322 4899999888876543 4789999999985
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccC
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (515)
.-.. ...+......... +....+.+|||++.....-....-.
T Consensus 215 P~~~-d~~L~~Av~~ark-------------------------------------~~g~~IylTATp~k~l~r~~~~g~~ 256 (441)
T COG4098 215 PFSD-DQSLQYAVKKARK-------------------------------------KEGATIYLTATPTKKLERKILKGNL 256 (441)
T ss_pred cccC-CHHHHHHHHHhhc-------------------------------------ccCceEEEecCChHHHHHHhhhCCe
Confidence 2110 0111111111110 1225789999997655443332222
Q ss_pred CCeeEeeCCccccCCcccceeEEeccCCCc------HHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCcee
Q 010196 290 HPLFLTTGETRYKLPERLESYKLICESKLK------PLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIK 361 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k------~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~ 361 (515)
.++.+.......++ .+-.+...-....+ ...|..+++.. .+.+++||++++...+.++..|+.... ...
T Consensus 257 ~~~klp~RfH~~pL--pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~-~~~ 333 (441)
T COG4098 257 RILKLPARFHGKPL--PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLP-KET 333 (441)
T ss_pred eEeecchhhcCCCC--CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHHHHHHHHHhhCC-ccc
Confidence 22333222222222 22223222222222 23566677643 568999999999999999999955331 234
Q ss_pred EEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC--CChhhhHHhhhhcccCCCC--ccEEE
Q 010196 362 IKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--AYIKTYIHRAGRTARAGQL--GRCFT 437 (515)
Q Consensus 362 v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p--~s~~~~~Qr~GR~gR~g~~--g~~~~ 437 (515)
+...|+.. ..|.+..+.|++|+..+|++|.+++||+-+|++++++.-.-. .+...++|..||+||.-.. |.++.
T Consensus 334 i~~Vhs~d--~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRvGRs~~~PtGdv~F 411 (441)
T COG4098 334 IASVHSED--QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRVGRSLERPTGDVLF 411 (441)
T ss_pred eeeeeccC--ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhccCCCcCCCCcEEE
Confidence 45666653 458899999999999999999999999999999987754322 4577899999999997443 76666
Q ss_pred Eeech
Q 010196 438 LLHKD 442 (515)
Q Consensus 438 ~~~~~ 442 (515)
|-...
T Consensus 412 FH~G~ 416 (441)
T COG4098 412 FHYGK 416 (441)
T ss_pred Eeccc
Confidence 65433
No 100
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.95 E-value=1.2e-27 Score=232.80 Aligned_cols=309 Identities=19% Similarity=0.236 Sum_probs=220.3
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
++-|+|..|+. .+.++..|++.|.|.+|||.++-.++...|.... +++|..|-++|.+|-++++..-+.
T Consensus 129 ~LDpFQ~~aI~----Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQ----RVIYTSPIKALSNQKYREl~~EF~--- 197 (1041)
T KOG0948|consen 129 TLDPFQSTAIK----CIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQ----RVIYTSPIKALSNQKYRELLEEFK--- 197 (1041)
T ss_pred ccCchHhhhhh----hhcCCceEEEEeecCCCcchHHHHHHHHHHHhcC----eEEeeChhhhhcchhHHHHHHHhc---
Confidence 68899999853 4457899999999999999999988888887754 899999999999999998876544
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
.|++.+|+.+. ...+.-+|+|.+.|...+.++.. -+..+.+||+||+|.|
T Consensus 198 -DVGLMTGDVTI----------------------------nP~ASCLVMTTEILRsMLYRGSE-vmrEVaWVIFDEIHYM 247 (1041)
T KOG0948|consen 198 -DVGLMTGDVTI----------------------------NPDASCLVMTTEILRSMLYRGSE-VMREVAWVIFDEIHYM 247 (1041)
T ss_pred -ccceeecceee----------------------------CCCCceeeeHHHHHHHHHhccch-HhheeeeEEeeeehhc
Confidence 45677777653 24457899999999999888543 4778999999999999
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhc---
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL--- 286 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~--- 286 (515)
-|...+-.++..+=+++ +.++.+++|||+++... ++.|
T Consensus 248 RDkERGVVWEETIIllP--------------------------------------~~vr~VFLSATiPNA~q-FAeWI~~ 288 (1041)
T KOG0948|consen 248 RDKERGVVWEETIILLP--------------------------------------DNVRFVFLSATIPNARQ-FAEWICH 288 (1041)
T ss_pred cccccceeeeeeEEecc--------------------------------------ccceEEEEeccCCCHHH-HHHHHHH
Confidence 77665543333322222 33478999999976543 3332
Q ss_pred ccCCCeeEeeCCccccCCccccee---------EEeccCCC---------------------------------------
Q 010196 287 DLHHPLFLTTGETRYKLPERLESY---------KLICESKL--------------------------------------- 318 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~--------------------------------------- 318 (515)
.-..|..+.+..-+ |..+++| +..++...
T Consensus 289 ihkQPcHVVYTdyR---PTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~ 365 (1041)
T KOG0948|consen 289 IHKQPCHVVYTDYR---PTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGKG 365 (1041)
T ss_pred HhcCCceEEeecCC---CCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCCC
Confidence 22344444332211 1112222 11111110
Q ss_pred ----cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCC------------------------------------C
Q 010196 319 ----KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------------------------------L 358 (515)
Q Consensus 319 ----k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~------------------------------------~ 358 (515)
....++..+-..+..|+|||+-+++.|+.++-.+..+.- +
T Consensus 366 ~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL 445 (1041)
T KOG0948|consen 366 PGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLL 445 (1041)
T ss_pred CCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHH
Confidence 111233333344567999999999999999887754210 1
Q ss_pred ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC---------CCChhhhHHhhhhcccC
Q 010196 359 RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK---------PAYIKTYIHRAGRTARA 429 (515)
Q Consensus 359 ~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~---------p~s~~~~~Qr~GR~gR~ 429 (515)
...++++|+++-+--++.+.=.|.+|-+++|+||..++.|+|.|.-++|+- .. .-|--.|+|+.|||||.
T Consensus 446 ~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT-~~rKfDG~~fRwissGEYIQMSGRAGRR 524 (1041)
T KOG0948|consen 446 RRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT-AVRKFDGKKFRWISSGEYIQMSGRAGRR 524 (1041)
T ss_pred HhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe-eccccCCcceeeecccceEEeccccccc
Confidence 236889999999999999999999999999999999999999996555543 22 12455899999999999
Q ss_pred CCC--ccEEEEeech
Q 010196 430 GQL--GRCFTLLHKD 442 (515)
Q Consensus 430 g~~--g~~~~~~~~~ 442 (515)
|.+ |.|++++++.
T Consensus 525 G~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 525 GIDDRGIVILMIDEK 539 (1041)
T ss_pred CCCCCceEEEEecCc
Confidence 976 8888888754
No 101
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.95 E-value=7.9e-27 Score=234.09 Aligned_cols=354 Identities=21% Similarity=0.252 Sum_probs=244.6
Q ss_pred CCHHHHH-HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 35 LDPRLKV-ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 35 l~~~l~~-~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+++.... ..+..|...++.||.+|+. .++++.++|.|..+||+.|||+++-+.++..+.-. +..++.+.|-.+.
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls--~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~---rr~~llilp~vsi 281 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLS--LPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR---RRNVLLILPYVSI 281 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhc--chhhhcccceEEeCCCccchHHHHHHHHHHHHHHH---hhceeEecceeeh
Confidence 4444443 3444688999999999975 55667899999999999999999998888766543 2368899999888
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCc-C
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-G 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~ 192 (515)
+..-...+..+...+|+.|...+|..+.... .+.-++.|||.++-..++.+.- .
T Consensus 282 v~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~-------------------------~k~~sv~i~tiEkanslin~lie~ 336 (1008)
T KOG0950|consen 282 VQEKISALSPFSIDLGFPVEEYAGRFPPEKR-------------------------RKRESVAIATIEKANSLINSLIEQ 336 (1008)
T ss_pred hHHHHhhhhhhccccCCcchhhcccCCCCCc-------------------------ccceeeeeeehHhhHhHHHHHHhc
Confidence 8888888889988889999888877654322 2334899999987654443210 0
Q ss_pred CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
-.+..+.+||+||.|.+.+.+.+..++.++..+.-.+.. ..+|.+.|
T Consensus 337 g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~---------------------------------~~~~iIGM 383 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENLE---------------------------------TSVQIIGM 383 (1008)
T ss_pred CCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhccc---------------------------------cceeEeee
Confidence 135678999999999999999999999988765432211 11478999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCC------------------CcHHHHHHHHHhc--CC
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK------------------LKPLYLVALLQSL--GE 332 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~k~~~l~~~l~~~--~~ 332 (515)
|||+++.. .+..+. . ..++........+.+.+.......... ...+.+..+.... ++
T Consensus 384 SATi~N~~-lL~~~L-~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~ 460 (1008)
T KOG0950|consen 384 SATIPNNS-LLQDWL-D-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEG 460 (1008)
T ss_pred ecccCChH-HHHHHh-h-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcC
Confidence 99996542 222211 1 111111111111111111000000000 0012222222211 24
Q ss_pred CeEEEEcCChhhHHHHHHHHhhcC-----------------------------------CCceeEEEccCccCHHHHHHH
Q 010196 333 EKCIVFTSSVESTHRLCTLLNHFG-----------------------------------ELRIKIKEYSGLQRQSVRSKT 377 (515)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~-----------------------------------~~~~~v~~~~~~~~~~~r~~~ 377 (515)
..+||||++++.|+.++..+.... .....+.++|++++.++|+.+
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~i 540 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREII 540 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHH
Confidence 469999999999999886653311 023478899999999999999
Q ss_pred HHHHhcCCceEEEecCCccccCCCCCCCEEEEcc----CCCChhhhHHhhhhcccCCCC--ccEEEEeechhHHHHHHHH
Q 010196 378 LKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKLL 451 (515)
Q Consensus 378 l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~----~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d~~~~~~~~ 451 (515)
...|++|.+.|++||+.++-|+|+|..+++|-.- .+.+...|.|++|||||.|.+ |.+++++.+.|...+..++
T Consensus 541 E~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~~~~lv 620 (1008)
T KOG0950|consen 541 EAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKRVRELV 620 (1008)
T ss_pred HHHHHhcCeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhHHHHHH
Confidence 9999999999999999999999999766666432 224566899999999999876 9999999999988888776
Q ss_pred HHh
Q 010196 452 QKA 454 (515)
Q Consensus 452 ~~~ 454 (515)
...
T Consensus 621 ~~~ 623 (1008)
T KOG0950|consen 621 NSP 623 (1008)
T ss_pred hcc
Confidence 653
No 102
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.94 E-value=5.6e-24 Score=228.19 Aligned_cols=174 Identities=19% Similarity=0.270 Sum_probs=121.2
Q ss_pred CCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 32 LPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 32 ~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
++.+++.+.+.+...|| ++||.|.+++..+...+..++++++.||||+|||++|++|++..+.. +.+++|.+||+
T Consensus 228 ~~~~~~~~~~~~~~~~~-~~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~----~~~vvi~t~t~ 302 (850)
T TIGR01407 228 YNTLSSLFSKNIDRLGL-EYRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT----EKPVVISTNTK 302 (850)
T ss_pred cccccHHHHHhhhhcCC-ccCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC----CCeEEEEeCcH
Confidence 34566788899988999 59999999988888888889999999999999999999999887662 23799999999
Q ss_pred HHHHHHHH-HHHHhccccC--cEEEEeecCCchHH--HHHHHhcc-----------------------Cccc--------
Q 010196 112 DLALQVKD-VFAAIAPAVG--LSVGLAVGQSSIAD--EISELIKR-----------------------PKLE-------- 155 (515)
Q Consensus 112 ~L~~q~~~-~~~~~~~~~~--~~v~~~~g~~~~~~--~~~~~~~~-----------------------~~~~-------- 155 (515)
+|.+|+.. ++..+...++ +++..+.|..++-- ........ ...+
T Consensus 303 ~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~~ 382 (850)
T TIGR01407 303 VLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGGN 382 (850)
T ss_pred HHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCcc
Confidence 99999865 5665554444 88888888876410 11000000 0000
Q ss_pred ---------c---cccC-----CchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHH
Q 010196 156 ---------A---GICY-----DPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (515)
Q Consensus 156 ---------~---~~~~-----~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~ 211 (515)
. +..+ .+....+.....++|+|+++..|+..+.....+ +...+++||||||++.+
T Consensus 383 ~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~i-lp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 383 KMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPEL-FPSFRDLIIDEAHHLPD 454 (850)
T ss_pred hhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhccccc-CCCCCEEEEECcchHHH
Confidence 0 0001 011222334457899999999888776443322 34567999999999864
No 103
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.94 E-value=1.4e-24 Score=212.25 Aligned_cols=363 Identities=20% Similarity=0.204 Sum_probs=231.6
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..+++||.+.+.+++.....|-|.|+...+|.|||+.. +..+.++..........||++|...| ..|.++|++|++
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GPfLVi~P~StL-~NW~~Ef~rf~P-- 241 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGPFLVIAPKSTL-DNWMNEFKRFTP-- 241 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCCeEEEeeHhhH-HHHHHHHHHhCC--
Confidence 36999999999999887778899999999999999974 45666665532323358999999776 569999999998
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
++++.+++|+........+-. ......+|+|+|+++.+.--.- +.--.++++||||||+
T Consensus 242 ~l~~~~~~Gdk~eR~~~~r~~------------------~~~~~fdV~iTsYEi~i~dk~~---lk~~~W~ylvIDEaHR 300 (971)
T KOG0385|consen 242 SLNVVVYHGDKEERAALRRDI------------------MLPGRFDVCITSYEIAIKDKSF---LKKFNWRYLVIDEAHR 300 (971)
T ss_pred CcceEEEeCCHHHHHHHHHHh------------------hccCCCceEeehHHHHHhhHHH---HhcCCceEEEechhhh
Confidence 578899999875433322211 1223689999999998754222 2233688999999999
Q ss_pred HHHHHH----------------------HhHHHHHHhhcccCcccccCCccccccc-----cccc------hhhhhcccc
Q 010196 209 LLREAY----------------------QAWLPTVLQLTRSDNENRFSDASTFLPS-----AFGS------LKTIRRCGV 255 (515)
Q Consensus 209 l~~~~~----------------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~ 255 (515)
+-+... +..+..++.++...-+..|.+...|... ..+. +..+.+...
T Consensus 301 iKN~~s~L~~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFl 380 (971)
T KOG0385|consen 301 IKNEKSKLSKILREFKTDNRLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFL 380 (971)
T ss_pred hcchhhHHHHHHHHhcccceeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHH
Confidence 754321 1222333333332233333322111100 0000 000000000
Q ss_pred ccCCCC---CCCCceeeEEEEEEecCCchh-----------------------------hhhcccCCCeeEeeCCccccC
Q 010196 256 ERGFKD---KPYPRLVKMVLSATLTQDPNK-----------------------------LAQLDLHHPLFLTTGETRYKL 303 (515)
Q Consensus 256 ~~~~~~---~~~~~~~~i~~SaT~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~ 303 (515)
.+..+. ...|+..-+.+-.+++.-... ..+...++|..+...... +.
T Consensus 381 LRR~K~dVe~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg-~p 459 (971)
T KOG0385|consen 381 LRRIKSDVEKSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPG-PP 459 (971)
T ss_pred HHHHHHhHhhcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCC-CC
Confidence 000000 011111111111122111111 111233444444331110 11
Q ss_pred CcccceeEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHH
Q 010196 304 PERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (515)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f 381 (515)
...-...+....|+..|..+|... .+.++|||..-....+.+.++..-.+ +.++.+.|.++.++|...++.|
T Consensus 460 ---yttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~---y~ycRiDGSt~~eeR~~aI~~f 533 (971)
T KOG0385|consen 460 ---YTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRG---YEYCRLDGSTSHEEREDAIEAF 533 (971)
T ss_pred ---CCcchHHHhcCcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcC---ceeEeecCCCCcHHHHHHHHhc
Confidence 111122345677888888888754 58899999998888888888876655 8999999999999999999999
Q ss_pred hcCC---ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE--EEEeechh
Q 010196 382 REGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDE 443 (515)
Q Consensus 382 ~~g~---~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~d 443 (515)
.... .-.|++|.+.+.|||+..+++||.||..|+|..-+|+.-||+|.|+...| +-+++.+.
T Consensus 534 n~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitent 600 (971)
T KOG0385|consen 534 NAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENT 600 (971)
T ss_pred CCCCcceEEEEEeccccccccccccccEEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccch
Confidence 9654 44689999999999999999999999999999999999999999998555 44555553
No 104
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.93 E-value=1.6e-24 Score=227.64 Aligned_cols=343 Identities=17% Similarity=0.161 Sum_probs=210.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
..++.|..++..+...-..+..+++.||||+|||.+.+.++...+........+++++.|++++++++++.++++....+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 35899999988766533223389999999999999999999988877423566899999999999999999998876543
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC-C--CcceEEEEcch
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT-L--EHLCYLVVDET 206 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~-~--~~~~~vViDEa 206 (515)
......+|.....-. ..+... ..+.-............+.++||...+........+. + -..+.+|+||+
T Consensus 275 ~~~~~~h~~~~~~~~-----~~~~~~--~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~ 347 (733)
T COG1203 275 VIGKSLHSSSKEPLL-----LEPDQD--ILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEV 347 (733)
T ss_pred cccccccccccchhh-----hccccc--cceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccH
Confidence 322212333221111 000000 0000000000111123555666655554322212221 1 12468999999
Q ss_pred hHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhc
Q 010196 207 DRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQL 286 (515)
Q Consensus 207 h~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~ 286 (515)
|.+.+......+..++..+... +.+++++|||+|.........
T Consensus 348 h~~~~~~~~~~l~~~i~~l~~~-------------------------------------g~~ill~SATlP~~~~~~l~~ 390 (733)
T COG1203 348 HLYADETMLAALLALLEALAEA-------------------------------------GVPVLLMSATLPPFLKEKLKK 390 (733)
T ss_pred HhhcccchHHHHHHHHHHHHhC-------------------------------------CCCEEEEecCCCHHHHHHHHH
Confidence 9876663333344444433321 237899999999877665554
Q ss_pred ccCCCeeEeeCCccc-cC--CcccceeEEeccCCCcHHHHHHHH-HhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeE
Q 010196 287 DLHHPLFLTTGETRY-KL--PERLESYKLICESKLKPLYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKI 362 (515)
Q Consensus 287 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~k~~~l~~~l-~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v 362 (515)
.......+....... .. +....................... ....+.+++|.|||+..|.++++.|+..+. .+
T Consensus 391 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~---~v 467 (733)
T COG1203 391 ALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRAIELYEKLKEKGP---KV 467 (733)
T ss_pred HHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHHHHHHHHHHhcCC---CE
Confidence 433332222211100 00 000000000000000001111111 122477999999999999999999998763 79
Q ss_pred EEccCccCHHHHHHHHHHHh----cCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCC--CCccEE
Q 010196 363 KEYSGLQRQSVRSKTLKAFR----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG--QLGRCF 436 (515)
Q Consensus 363 ~~~~~~~~~~~r~~~l~~f~----~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g--~~g~~~ 436 (515)
+.+||.+...+|.+.++.+. .+...|+|||++.+.|+|+. .+++|---.| +++++||+||++|.| ..|.++
T Consensus 468 ~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~aP--idSLIQR~GRv~R~g~~~~~~~~ 544 (733)
T COG1203 468 LLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELAP--IDSLIQRAGRVNRHGKKENGKIY 544 (733)
T ss_pred EEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCCC--HHHHHHHHHHHhhcccccCCcee
Confidence 99999999999998888654 56789999999999999996 7777744444 889999999999999 457777
Q ss_pred EEeech
Q 010196 437 TLLHKD 442 (515)
Q Consensus 437 ~~~~~~ 442 (515)
++....
T Consensus 545 v~~~~~ 550 (733)
T COG1203 545 VYNDEE 550 (733)
T ss_pred Eeeccc
Confidence 776644
No 105
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.92 E-value=6.9e-23 Score=207.05 Aligned_cols=391 Identities=22% Similarity=0.285 Sum_probs=241.7
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
.|| +|+..|. .| ...+.+|+++-+.||||.|||..-++..+....+ +.+++|++||..|+.|+++.+++++
T Consensus 79 ~G~-~~ws~QR-~W---akR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a~k----gkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 79 TGF-RPWSAQR-VW---AKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLAKK----GKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred hCC-CchHHHH-HH---HHHHHcCCceEEEcCCCCchhHHHHHHHHHHHhc----CCeEEEEecCHHHHHHHHHHHHHHH
Confidence 355 8999996 33 3445679999999999999998544444433322 3589999999999999999999998
Q ss_pred cccC-cEEEE-eecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcCCCCCcceEEE
Q 010196 126 PAVG-LSVGL-AVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 126 ~~~~-~~v~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (515)
...+ ..+.. .++..+..+.. .....+. +..||+|+|.+.|...+.... --+|++|+
T Consensus 150 e~~~~~~~~~~yh~~l~~~eke------------------e~le~i~~gdfdIlitTs~FL~k~~e~L~---~~kFdfif 208 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKE------------------EALERIESGDFDILITTSQFLSKRFEELS---KLKFDFIF 208 (1187)
T ss_pred hhcCCcceeeeeccccchHHHH------------------HHHHHHhcCCccEEEEeHHHHHhhHHHhc---ccCCCEEE
Confidence 7665 44433 44444443332 2223333 358999999888877766522 23689999
Q ss_pred EcchhHHHHHHHHhHHHHHHhhcccCcccccCCcc--cc-----ccccccchhhhhccccccCCCCCCCCceeeEEEEEE
Q 010196 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDAS--TF-----LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSAT 275 (515)
Q Consensus 203 iDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT 275 (515)
+|++|.++..+ ..++.++.++.......-..+. .. -.+.........+....+.... -...-+.++.|||
T Consensus 209 VDDVDA~Lkas--kNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~-r~k~g~LvvsSAT 285 (1187)
T COG1110 209 VDDVDAILKAS--KNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKK-RRKLGILVVSSAT 285 (1187)
T ss_pred EccHHHHHhcc--ccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHh-ccCCceEEEeecc
Confidence 99999988765 3444444443321110000000 00 0000001111100000000000 0122367889999
Q ss_pred ecCCchh--hhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCC---hhhHHHHHH
Q 010196 276 LTQDPNK--LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS---VESTHRLCT 350 (515)
Q Consensus 276 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s---~~~~~~l~~ 350 (515)
..+.-.. +.+..+ -+..+.....+.+.+..+ +.. .-...+.++++.. +...|||++. ++.++++++
T Consensus 286 g~~rg~R~~LfReLl----gFevG~~~~~LRNIvD~y-~~~---~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e 356 (1187)
T COG1110 286 GKPRGSRLKLFRELL----GFEVGSGGEGLRNIVDIY-VES---ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAE 356 (1187)
T ss_pred CCCCCchHHHHHHHh----CCccCccchhhhheeeee-ccC---ccHHHHHHHHHHh-CCCeEEEEEcHHhHHHHHHHHH
Confidence 7654422 122111 112222222222222222 222 4445556666655 4578999999 999999999
Q ss_pred HHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEec----CCccccCCCCC-CCEEEEccCC------------
Q 010196 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS----DAMTRGMDVEG-VNNVVNYDKP------------ 413 (515)
Q Consensus 351 ~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T----~~~~~GiDi~~-v~~VI~~~~p------------ 413 (515)
+|+..| +++..+|+. ..+.++.|.+|++++||++ .++.||+|+|. +..+|.++.|
T Consensus 357 ~Lr~~G---i~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvPk~rf~l~~~~~~ 428 (1187)
T COG1110 357 YLRSHG---INAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVPKFRFRLTLEESD 428 (1187)
T ss_pred HHHhcC---ceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhheeEEEEecCCceeeeccccccc
Confidence 999877 899989884 3678999999999999885 57899999996 8899998877
Q ss_pred --------------------------------------------------------------------------------
Q 010196 414 -------------------------------------------------------------------------------- 413 (515)
Q Consensus 414 -------------------------------------------------------------------------------- 413 (515)
T Consensus 429 ~~~~l~~ls~~~~~~~~~~~~~~~~rl~~~ir~~~~~~l~~~~~l~~~~~~~~~~~e~v~~~~~~~~e~L~~e~~~k~i~ 508 (1187)
T COG1110 429 PKRLLYLLSALSDREARSRLEGLAGRLRRIIRRLSPYSLLKLMKLKKRPDVDRHLAEEVRTLAEFVRELLKDEERVKKIA 508 (1187)
T ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHhhhcHHHHHhHHHHhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ------------------CChhhhHHhhhhcccC--CC--CccEEEEeechhHHHHHHHHHHhc--CCCCCccCCChhhH
Q 010196 414 ------------------AYIKTYIHRAGRTARA--GQ--LGRCFTLLHKDEVKRFKKLLQKAD--NDSCPIHSIPSSLI 469 (515)
Q Consensus 414 ------------------~s~~~~~Qr~GR~gR~--g~--~g~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~~~~~~~ 469 (515)
.++.+|+|..||+-|. |. .|.++++++..+ .++.+.+.+. ........+.+-++
T Consensus 509 e~~~~vl~~~eg~~yi~vPD~~TYIQaSGRtSRLyaGglTkGlSvvlvdd~~--~f~~L~krm~~~~~e~e~k~l~evdL 586 (1187)
T COG1110 509 ESADLVLVYEEGELYLEVPDVRTYIQASGRTSRLYAGGLTKGLSVVLVDDPE--VFEGLIKRMSWKFIEIEFKEISEVDL 586 (1187)
T ss_pred hcCceEEEecCCceEEEecChhhheeccchHhhhhccccccceEEEEecCHH--HHHHHHHHHHHhhcccceeeccccCH
Confidence 3455699999999994 32 377777776554 5666666653 33444556666666
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 010196 470 ESLRPVYKSALDKLKETVE 488 (515)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~ 488 (515)
+++...+...-++.+..++
T Consensus 587 ~el~reIdEdR~~~r~~~~ 605 (1187)
T COG1110 587 EELLREIDEDRERVRRVLE 605 (1187)
T ss_pred HHHHHHHHhhHHHHHHHHh
Confidence 6666666666566655555
No 106
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=1.9e-24 Score=188.45 Aligned_cols=148 Identities=33% Similarity=0.539 Sum_probs=122.7
Q ss_pred chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcE
Q 010196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLS 131 (515)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 131 (515)
||+|.++++.+.. ++++++.||||+|||+++++|++..+.+. ...+++|++|+++|+.|+.+.+..++...+.+
T Consensus 1 t~~Q~~~~~~i~~----~~~~li~aptGsGKT~~~~~~~l~~~~~~--~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----GKNVLISAPTGSGKTLAYILPALNRLQEG--KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHT----TSEEEEECSTTSSHHHHHHHHHHHHHHTT--SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHc----CCCEEEECCCCCccHHHHHHHHHhhhccC--CCceEEEEeecccccccccccccccccccccc
Confidence 6899999998874 89999999999999999999999988875 23489999999999999999999999887789
Q ss_pred EEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHH
Q 010196 132 VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (515)
Q Consensus 132 v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~ 211 (515)
+..++++......... .+..+++|+|+||++|.+.+.... ..+.++++||+||+|.+.+
T Consensus 75 ~~~~~~~~~~~~~~~~--------------------~~~~~~~ilv~T~~~l~~~~~~~~-~~~~~~~~iViDE~h~l~~ 133 (169)
T PF00270_consen 75 VVLLHGGQSISEDQRE--------------------VLSNQADILVTTPEQLLDLISNGK-INISRLSLIVIDEAHHLSD 133 (169)
T ss_dssp EEEESTTSCHHHHHHH--------------------HHHTTSSEEEEEHHHHHHHHHTTS-STGTTESEEEEETHHHHHH
T ss_pred cccccccccccccccc--------------------cccccccccccCcchhhccccccc-cccccceeeccCccccccc
Confidence 9999998875433221 223568999999999999998743 3667799999999999988
Q ss_pred HHHHhHHHHHHhhcc
Q 010196 212 EAYQAWLPTVLQLTR 226 (515)
Q Consensus 212 ~~~~~~~~~i~~~~~ 226 (515)
..+...+..++....
T Consensus 134 ~~~~~~~~~i~~~~~ 148 (169)
T PF00270_consen 134 ETFRAMLKSILRRLK 148 (169)
T ss_dssp TTHHHHHHHHHHHSH
T ss_pred ccHHHHHHHHHHHhc
Confidence 777777777777653
No 107
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.92 E-value=3.2e-23 Score=195.73 Aligned_cols=163 Identities=21% Similarity=0.237 Sum_probs=125.9
Q ss_pred eeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChhhH
Q 010196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVEST 345 (515)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~ 345 (515)
|++..|||+...-.+...-.....++-..+ .+.......+.....+-|+..++. ..+.+++|-+-|++.+
T Consensus 388 q~i~VSATPg~~E~e~s~~~vveQiIRPTG--------LlDP~ievRp~~~QvdDL~~EI~~r~~~~eRvLVTtLTKkmA 459 (663)
T COG0556 388 QTIYVSATPGDYELEQSGGNVVEQIIRPTG--------LLDPEIEVRPTKGQVDDLLSEIRKRVAKNERVLVTTLTKKMA 459 (663)
T ss_pred CEEEEECCCChHHHHhccCceeEEeecCCC--------CCCCceeeecCCCcHHHHHHHHHHHHhcCCeEEEEeehHHHH
Confidence 889999998543322222111111111111 122222333455566666666653 2578999999999999
Q ss_pred HHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC-----CCChhhhH
Q 010196 346 HRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-----PAYIKTYI 420 (515)
Q Consensus 346 ~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~-----p~s~~~~~ 420 (515)
+.|.++|.+.| +++..+|++...-+|.+++..++.|..+|||+-+.+-+|+|+|.|++|.++|. ..|..+++
T Consensus 460 EdLT~Yl~e~g---ikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLI 536 (663)
T COG0556 460 EDLTEYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLI 536 (663)
T ss_pred HHHHHHHHhcC---ceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEeecCccccccccchHH
Confidence 99999999887 99999999999999999999999999999999999999999999999999874 46889999
Q ss_pred HhhhhcccCCCCccEEEEeech
Q 010196 421 HRAGRTARAGQLGRCFTLLHKD 442 (515)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~ 442 (515)
|-+|||.|. -.|.++++.+.-
T Consensus 537 QtIGRAARN-~~GkvIlYAD~i 557 (663)
T COG0556 537 QTIGRAARN-VNGKVILYADKI 557 (663)
T ss_pred HHHHHHhhc-cCCeEEEEchhh
Confidence 999999997 479999998754
No 108
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=8e-24 Score=216.97 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=111.4
Q ss_pred ccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEe
Q 010196 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (515)
Q Consensus 314 ~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~ 391 (515)
.....|...+...+... .+.++||||+|+..++.+++.|...+ ++...+|+ .+.+|+..+..|..+...|+||
T Consensus 578 ~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~g---I~h~vLna--kq~~REa~Iia~AG~~g~VtIA 652 (1025)
T PRK12900 578 KTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKR---IAHNVLNA--KQHDREAEIVAEAGQKGAVTIA 652 (1025)
T ss_pred cCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcC---CCceeecC--CHHHhHHHHHHhcCCCCeEEEe
Confidence 34456778888888543 67899999999999999999999876 88889997 5789999999999999999999
Q ss_pred cCCccccCCCC---CCC-----EEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhH
Q 010196 392 SDAMTRGMDVE---GVN-----NVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (515)
Q Consensus 392 T~~~~~GiDi~---~v~-----~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~ 444 (515)
|++++||+||+ +|. +||.+..|.|.+.|.|+.||+||.|.+|.+++|++.+|.
T Consensus 653 TNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 653 TNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred ccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 99999999999 443 458999999999999999999999999999999998773
No 109
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.91 E-value=7.7e-22 Score=202.66 Aligned_cols=131 Identities=21% Similarity=0.263 Sum_probs=114.8
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC
Q 010196 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (515)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~ 393 (515)
...+...+...+... .+.++||||+++..++.+++.|.+.+ +.+..+||++++.+|.++++.|+.|++.|||||+
T Consensus 424 ~~~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~g---i~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~ 500 (655)
T TIGR00631 424 TDGQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELG---IKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGIN 500 (655)
T ss_pred ccchHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhc---cceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcC
Confidence 445666677766643 56799999999999999999999876 8899999999999999999999999999999999
Q ss_pred CccccCCCCCCCEEEEcc-----CCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHH
Q 010196 394 AMTRGMDVEGVNNVVNYD-----KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKL 450 (515)
Q Consensus 394 ~~~~GiDi~~v~~VI~~~-----~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~ 450 (515)
.+++|+|+|++++||+++ .|.+..+|+||+||+||. ..|.+++|++..+..+...+
T Consensus 501 ~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~-~~G~vi~~~~~~~~~~~~ai 561 (655)
T TIGR00631 501 LLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVIMYADKITDSMQKAI 561 (655)
T ss_pred hhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC-CCCEEEEEEcCCCHHHHHHH
Confidence 999999999999999998 799999999999999998 58999999987654444433
No 110
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.91 E-value=4.7e-23 Score=209.31 Aligned_cols=317 Identities=20% Similarity=0.207 Sum_probs=210.7
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.+.+-|..|+..+..........++.+.||||||.+|+-.+-+.|.+++ .+|+|+|..+|..|+.+.|+..+ +
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk----qvLvLVPEI~Ltpq~~~rf~~rF---g 270 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK----QVLVLVPEIALTPQLLARFKARF---G 270 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCC----EEEEEeccccchHHHHHHHHHHh---C
Confidence 5788999998888765422477999999999999999988888887754 79999999999999999999875 5
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
.++..++++-+..+... .|+... +...|||||-..+ ...+.++.+||+||-|.
T Consensus 271 ~~v~vlHS~Ls~~er~~------------------~W~~~~~G~~~vVIGtRSAl--------F~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 271 AKVAVLHSGLSPGERYR------------------VWRRARRGEARVVIGTRSAL--------FLPFKNLGLIIVDEEHD 324 (730)
T ss_pred CChhhhcccCChHHHHH------------------HHHHHhcCCceEEEEechhh--------cCchhhccEEEEecccc
Confidence 78899999988777643 444444 4589999993322 23578899999999995
Q ss_pred HHHHHHH---------hHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCC
Q 010196 209 LLREAYQ---------AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (515)
Q Consensus 209 l~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (515)
- +|. ..+..+... ..+.++++-|||++-+
T Consensus 325 ~---sYKq~~~prYhARdvA~~Ra~---------------------------------------~~~~pvvLgSATPSLE 362 (730)
T COG1198 325 S---SYKQEDGPRYHARDVAVLRAK---------------------------------------KENAPVVLGSATPSLE 362 (730)
T ss_pred c---cccCCcCCCcCHHHHHHHHHH---------------------------------------HhCCCEEEecCCCCHH
Confidence 2 111 001111110 1334789999998654
Q ss_pred chhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCc----HHHHHHHHHhc--CCCeEEEEcCC------------
Q 010196 280 PNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK----PLYLVALLQSL--GEEKCIVFTSS------------ 341 (515)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k----~~~l~~~l~~~--~~~~~lVf~~s------------ 341 (515)
....+......-..+...... ..+..+....+....... ...+++.+++. .+.++|+|.|.
T Consensus 363 S~~~~~~g~y~~~~L~~R~~~-a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~~l~C~~C 441 (730)
T COG1198 363 SYANAESGKYKLLRLTNRAGR-ARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAPLLLCRDC 441 (730)
T ss_pred HHHhhhcCceEEEEccccccc-cCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccceeecccC
Confidence 443332221112222222211 111111111111111111 13444444322 46778888877
Q ss_pred ------------------------------------------------hhhHHHHHHHHhhcCCCceeEEEccCccCHHH
Q 010196 342 ------------------------------------------------VESTHRLCTLLNHFGELRIKIKEYSGLQRQSV 373 (515)
Q Consensus 342 ------------------------------------------------~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~ 373 (515)
.-.++++.+.|.... .+.++..+.++.....
T Consensus 442 g~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F-P~~rv~r~d~Dtt~~k 520 (730)
T COG1198 442 GYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF-PGARIIRIDSDTTRRK 520 (730)
T ss_pred CCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC-CCCcEEEEccccccch
Confidence 223355555555543 3467888888777533
Q ss_pred --HHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCC------------hhhhHHhhhhcccCCCCccEEEEe
Q 010196 374 --RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY------------IKTYIHRAGRTARAGQLGRCFTLL 439 (515)
Q Consensus 374 --r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s------------~~~~~Qr~GR~gR~g~~g~~~~~~ 439 (515)
-+..++.|..|+.+|||+|++++.|.|+|+++.|...|.... ...+.|-.||+||.+.+|.+++-.
T Consensus 521 ~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~~G~VvIQT 600 (730)
T COG1198 521 GALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGKPGEVVIQT 600 (730)
T ss_pred hhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCCCCeEEEEe
Confidence 468899999999999999999999999999998877664321 235789999999999999888766
Q ss_pred echh
Q 010196 440 HKDE 443 (515)
Q Consensus 440 ~~~d 443 (515)
..-|
T Consensus 601 ~~P~ 604 (730)
T COG1198 601 YNPD 604 (730)
T ss_pred CCCC
Confidence 4433
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.91 E-value=4e-22 Score=207.34 Aligned_cols=307 Identities=16% Similarity=0.134 Sum_probs=181.1
Q ss_pred cchhhHHHHHHHhCCCCC------CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 51 LFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~------~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
++++|..|+..++..+.. .+..++++|||||||++.+..+...+.. ...+++|||||+.+|..|+.+.|..+
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~--~~~~~vl~lvdR~~L~~Q~~~~f~~~ 316 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL--LKNPKVFFVVDRRELDYQLMKEFQSL 316 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh--cCCCeEEEEECcHHHHHHHHHHHHhh
Confidence 789999999988776544 3579999999999999877655444432 34568999999999999999999988
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcC-cCCCCCcc-eEE
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT-RGFTLEHL-CYL 201 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~-~~~~~~~~-~~v 201 (515)
.... ..+..+.... . ..+. ....|+|+|.+.|...+... ..+..... .+|
T Consensus 317 ~~~~------~~~~~s~~~L-~--------------------~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lv 369 (667)
T TIGR00348 317 QKDC------AERIESIAEL-K--------------------RLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVV 369 (667)
T ss_pred CCCC------CcccCCHHHH-H--------------------HHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEE
Confidence 5421 0111111111 1 1122 23589999999997643321 11211112 289
Q ss_pred EEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCch
Q 010196 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (515)
Q Consensus 202 ViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 281 (515)
|+||||+.....+...+.. .+ |....+++|||+.....
T Consensus 370 IvDEaHrs~~~~~~~~l~~---~~---------------------------------------p~a~~lGfTaTP~~~~d 407 (667)
T TIGR00348 370 IFDEAHRSQYGELAKNLKK---AL---------------------------------------KNASFFGFTGTPIFKKD 407 (667)
T ss_pred EEEcCccccchHHHHHHHh---hC---------------------------------------CCCcEEEEeCCCccccc
Confidence 9999999754444333322 22 12256888888853211
Q ss_pred h----hhh-----------------cccCCCeeEeeCCccccC-----CcccceeEEe----------------------
Q 010196 282 K----LAQ-----------------LDLHHPLFLTTGETRYKL-----PERLESYKLI---------------------- 313 (515)
Q Consensus 282 ~----~~~-----------------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~---------------------- 313 (515)
. ... ....-|+.+........+ ..........
T Consensus 408 ~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 487 (667)
T TIGR00348 408 RDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKK 487 (667)
T ss_pred ccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHh
Confidence 1 110 000011111110000000 0000000000
Q ss_pred -ccCCCcHHHHHH-HHHhc------CCCeEEEEcCChhhHHHHHHHHhhcCCCc--eeEEEccCccCHH-----------
Q 010196 314 -CESKLKPLYLVA-LLQSL------GEEKCIVFTSSVESTHRLCTLLNHFGELR--IKIKEYSGLQRQS----------- 372 (515)
Q Consensus 314 -~~~~~k~~~l~~-~l~~~------~~~~~lVf~~s~~~~~~l~~~L~~~~~~~--~~v~~~~~~~~~~----------- 372 (515)
.........+.. ++++. .+.+++|||.++.+|..+.+.|.+..... .....+++.....
T Consensus 488 ~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~ 567 (667)
T TIGR00348 488 ILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIR 567 (667)
T ss_pred hhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhc
Confidence 000001111111 11111 24799999999999999999987653221 2344555543322
Q ss_pred ----------HHHHHHHHHhc-CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccC
Q 010196 373 ----------VRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (515)
Q Consensus 373 ----------~r~~~l~~f~~-g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (515)
....++++|+. +..+|||+++++..|+|.|.+++++...+-.+ ..++|.+||+.|.
T Consensus 568 ~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKplk~-h~LlQai~R~nR~ 634 (667)
T TIGR00348 568 TKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKPLKY-HGLLQAIARTNRI 634 (667)
T ss_pred cccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEeccccc-cHHHHHHHHhccc
Confidence 23478899976 67899999999999999999999987665454 5689999999993
No 112
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.90 E-value=1.5e-22 Score=208.68 Aligned_cols=305 Identities=21% Similarity=0.246 Sum_probs=199.1
Q ss_pred hCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc-cccCcEEEEeecCCch
Q 010196 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PAVGLSVGLAVGQSSI 141 (515)
Q Consensus 63 ~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~v~~~~g~~~~ 141 (515)
+..+..++-++|.||||||||...=.-+++... ..+..+.+.=|.|-=|..+++.+.+-. ...|-.|+...-..+
T Consensus 59 ~~ai~~~~vvii~getGsGKTTqlP~~lle~g~---~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~- 134 (845)
T COG1643 59 LKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL---GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFES- 134 (845)
T ss_pred HHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc---ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeec-
Confidence 333445778999999999999863333333322 122244444588855556666665432 223333433322211
Q ss_pred HHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH-HHHHHH-hHHH
Q 010196 142 ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLP 219 (515)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l-~~~~~~-~~~~ 219 (515)
.......|-++|.|.|+..+...+ .++.+++||+||||.= ++..+. ..+.
T Consensus 135 --------------------------~~s~~Trik~mTdGiLlrei~~D~--~Ls~ys~vIiDEaHERSl~tDilLgllk 186 (845)
T COG1643 135 --------------------------KVSPRTRIKVMTDGILLREIQNDP--LLSGYSVVIIDEAHERSLNTDILLGLLK 186 (845)
T ss_pred --------------------------cCCCCceeEEeccHHHHHHHhhCc--ccccCCEEEEcchhhhhHHHHHHHHHHH
Confidence 112345899999999999998754 3789999999999962 121111 1112
Q ss_pred HHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCc
Q 010196 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (515)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
.++... .+.+++++||||+ +...+...+...|++...+ .
T Consensus 187 ~~~~~r--------------------------------------r~DLKiIimSATl--d~~rfs~~f~~apvi~i~G-R 225 (845)
T COG1643 187 DLLARR--------------------------------------RDDLKLIIMSATL--DAERFSAYFGNAPVIEIEG-R 225 (845)
T ss_pred HHHhhc--------------------------------------CCCceEEEEeccc--CHHHHHHHcCCCCEEEecC-C
Confidence 222111 1235889999998 4555555554455444332 2
Q ss_pred cccCCcccceeE-EeccCCC-cHHHHHHHH---HhcCCCeEEEEcCChhhHHHHHHHHhh-cCCCceeEEEccCccCHHH
Q 010196 300 RYKLPERLESYK-LICESKL-KPLYLVALL---QSLGEEKCIVFTSSVESTHRLCTLLNH-FGELRIKIKEYSGLQRQSV 373 (515)
Q Consensus 300 ~~~~~~~~~~~~-~~~~~~~-k~~~l~~~l---~~~~~~~~lVf~~s~~~~~~l~~~L~~-~~~~~~~v~~~~~~~~~~~ 373 (515)
.+++ +.++ .....+. -...+...+ .....+.+|||.+...+.+..++.|.. .......+..+||.++..+
T Consensus 226 ~fPV----ei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~e 301 (845)
T COG1643 226 TYPV----EIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEE 301 (845)
T ss_pred ccce----EEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHH
Confidence 2222 2222 1111222 222333333 234578899999999999999999987 2214588999999999999
Q ss_pred HHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC------------------CCChhhhHHhhhhcccCCCCccE
Q 010196 374 RSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRC 435 (515)
Q Consensus 374 r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~ 435 (515)
...+++--..|..+|++||++++.++-||++..||.-+. |.|-.+..||.|||||.+ +|.|
T Consensus 302 Q~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~-pGic 380 (845)
T COG1643 302 QVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTG-PGIC 380 (845)
T ss_pred HHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCC-CceE
Confidence 999888777887789999999999999999999998553 345567889999999985 9999
Q ss_pred EEEeechhHH
Q 010196 436 FTLLHKDEVK 445 (515)
Q Consensus 436 ~~~~~~~d~~ 445 (515)
+-++++++..
T Consensus 381 yRLyse~~~~ 390 (845)
T COG1643 381 YRLYSEEDFL 390 (845)
T ss_pred EEecCHHHHH
Confidence 9999986643
No 113
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=1e-22 Score=202.69 Aligned_cols=303 Identities=19% Similarity=0.165 Sum_probs=191.7
Q ss_pred CCcchhhHHHHHHHhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~-~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (515)
..+|.+|..|+..+++++..|+ .+++++.||+|||.+++. ++.+|.+. ....++|+|+-+++|++|.+..+..+.+.
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAia-ii~rL~r~-~~~KRVLFLaDR~~Lv~QA~~af~~~~P~ 241 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIA-IIDRLIKS-GWVKRVLFLADRNALVDQAYGAFEDFLPF 241 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHH-HHHHHHhc-chhheeeEEechHHHHHHHHHHHHHhCCC
Confidence 3699999999999998888774 499999999999998765 44444443 23448999999999999999999999886
Q ss_pred cCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC----cCCCCCcceEEEE
Q 010196 128 VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT----RGFTLEHLCYLVV 203 (515)
Q Consensus 128 ~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~----~~~~~~~~~~vVi 203 (515)
. -.+..+.+... ...++|.++|.+.+....... ..+....+++||+
T Consensus 242 ~-~~~n~i~~~~~-----------------------------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvI 291 (875)
T COG4096 242 G-TKMNKIEDKKG-----------------------------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVI 291 (875)
T ss_pred c-cceeeeecccC-----------------------------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEe
Confidence 3 23333322211 123589999999998877553 2345677999999
Q ss_pred cchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchh-
Q 010196 204 DETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK- 282 (515)
Q Consensus 204 DEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~- 282 (515)
||||+-.-..+...+.++-..+ ++++||+......
T Consensus 292 DEaHRgi~~~~~~I~dYFdA~~--------------------------------------------~gLTATP~~~~d~~ 327 (875)
T COG4096 292 DEAHRGIYSEWSSILDYFDAAT--------------------------------------------QGLTATPKETIDRS 327 (875)
T ss_pred chhhhhHHhhhHHHHHHHHHHH--------------------------------------------HhhccCcccccccc
Confidence 9999965554444443333221 1223333221111
Q ss_pred ------------------hhhcccCCCeeEeeC--C-----------ccccCC-ccc--ceeE-------EeccCCCcHH
Q 010196 283 ------------------LAQLDLHHPLFLTTG--E-----------TRYKLP-ERL--ESYK-------LICESKLKPL 321 (515)
Q Consensus 283 ------------------~~~~~~~~~~~~~~~--~-----------~~~~~~-~~~--~~~~-------~~~~~~~k~~ 321 (515)
...-++.++..+... . .+.... ..+ .... ..........
T Consensus 328 T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~ 407 (875)
T COG4096 328 TYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTE 407 (875)
T ss_pred cccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhccccchHH
Confidence 111112221111110 0 000000 000 0000 0000111122
Q ss_pred HHHH----HHHh--cC--CCeEEEEcCChhhHHHHHHHHhhcCCC-c-eeEEEccCccCHHHHHHHHHHHhc--CCceEE
Q 010196 322 YLVA----LLQS--LG--EEKCIVFTSSVESTHRLCTLLNHFGEL-R-IKIKEYSGLQRQSVRSKTLKAFRE--GKIQVL 389 (515)
Q Consensus 322 ~l~~----~l~~--~~--~~~~lVf~~s~~~~~~l~~~L~~~~~~-~-~~v~~~~~~~~~~~r~~~l~~f~~--g~~~vL 389 (515)
.+.. .+.. .. .+|+||||.+..||+.+...|...... + --+..+.|+-.+ -...++.|.. ...+|.
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~--~q~~Id~f~~ke~~P~Ia 485 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQ--AQALIDNFIDKEKYPRIA 485 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchh--hHHHHHHHHhcCCCCceE
Confidence 2222 3333 11 469999999999999999999764321 1 234556665443 3455667765 347899
Q ss_pred EecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccC
Q 010196 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (515)
Q Consensus 390 v~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (515)
|+.+++..|||+|.|-.++.+..-.|...|.|++||+-|.
T Consensus 486 itvdlL~TGiDvpev~nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 486 ITVDLLTTGVDVPEVVNLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred EehhhhhcCCCchheeeeeehhhhhhHHHHHHHhcCcccc
Confidence 9999999999999999999999999999999999999995
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.90 E-value=5e-21 Score=202.44 Aligned_cols=389 Identities=16% Similarity=0.153 Sum_probs=214.1
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH-HHHHHHh
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV-KDVFAAI 124 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~ 124 (515)
.|| ++|+.|.+.+..+...+..+..++++|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+..+
T Consensus 242 ~~~-e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~-----~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 242 LGL-EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS-----DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred CCC-ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc-----CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 466 799999998888888788889999999999999999999988754 234799999999999999 4778877
Q ss_pred ccccCcEEEEeecCCchH--HHHHHHhc-----------------------cCccc--------------------cccc
Q 010196 125 APAVGLSVGLAVGQSSIA--DEISELIK-----------------------RPKLE--------------------AGIC 159 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~--~~~~~~~~-----------------------~~~~~--------------------~~~~ 159 (515)
...+++++..+.|+.++- ........ ..+.+ .+..
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 777788888888877632 11111000 00000 0001
Q ss_pred CC--chhHHHh---hccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHH---------HhHHHHHH---
Q 010196 160 YD--PEDVLQE---LQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAY---------QAWLPTVL--- 222 (515)
Q Consensus 160 ~~--~~~~~~~---l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~---------~~~~~~i~--- 222 (515)
|. ....+.. -...++|+|++...|+..+..... +...+.+||||||++.+... ......+.
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~--~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~ 473 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD--FARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKAL 473 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC--CCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHH
Confidence 11 1112222 234689999999988877654332 45789999999999754210 00000000
Q ss_pred ----------------hhc-------ccC--------------------c-------ccccCCcc-cccccccc----c-
Q 010196 223 ----------------QLT-------RSD--------------------N-------ENRFSDAS-TFLPSAFG----S- 246 (515)
Q Consensus 223 ----------------~~~-------~~~--------------------~-------~~~~~~~~-~~~~~~~~----~- 246 (515)
..+ ... . ...+.... .++-.... .
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~ 553 (820)
T PRK07246 474 SGPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRV 553 (820)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCcce
Confidence 000 000 0 00000000 00000000 0
Q ss_pred h-hhhhccccccCCCCCCCCceeeEEEEEEec--CCchhhhhcccCCCeeEeeCCccccCCcccceeEEe--ccC-----
Q 010196 247 L-KTIRRCGVERGFKDKPYPRLVKMVLSATLT--QDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLI--CES----- 316 (515)
Q Consensus 247 ~-~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----- 316 (515)
. -...+..+. .+.........++++|||++ +.........+......... ..... .....+. ...
T Consensus 554 ~~l~~~pl~v~-~~~~~~~~~~~~i~tSATL~v~~~f~~~~~lGl~~~~~~~~~---~~~~~-~~~~~i~~~~p~~~~~~ 628 (820)
T PRK07246 554 TYLNSASKAFT-HFSQLLPETCKTYFVSATLQISPRVSLADLLGFEEYLFHKIE---KDKKQ-DQLVVVDQDMPLVTETS 628 (820)
T ss_pred eEEEeeeCcHH-HHHHHHhcCCeEEEEecccccCCCCcHHHHcCCCccceecCC---CChHH-ccEEEeCCCCCCCCCCC
Confidence 0 000000000 00000011236789999996 22221112233222111110 00000 0111110 010
Q ss_pred -CCcHHHHHHHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC
Q 010196 317 -KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (515)
Q Consensus 317 -~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~ 393 (515)
+.-...+...+.. ..+++++|+++|.+..+.+++.|.... ..+ ...|... .+..++++|++++..||++|+
T Consensus 629 ~~~~~~~~~~~i~~~~~~~g~~LVLFtS~~~l~~v~~~l~~~~---~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~ 702 (820)
T PRK07246 629 DEVYAEEIAKRLEELKQLQQPILVLFNSKKHLLAVSDLLDQWQ---VSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLG 702 (820)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECcHHHHHHHHHHHhhcC---CcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecc
Confidence 1111122222211 357899999999999999999997542 344 3444322 256789999999899999999
Q ss_pred CccccCCCCC--CCEEEEccCCCC------------------------------hhhhHHhhhhcccCCCCccEEEEeec
Q 010196 394 AMTRGMDVEG--VNNVVNYDKPAY------------------------------IKTYIHRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 394 ~~~~GiDi~~--v~~VI~~~~p~s------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
.+++|||+|+ ...||+..+|.. ...+.|.+||.-|...+--+++++++
T Consensus 703 sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ilD~ 782 (820)
T PRK07246 703 SFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLILDR 782 (820)
T ss_pred hhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEEECC
Confidence 9999999974 556777776622 12356999999998765334444444
Q ss_pred h-hHHHH-HHHHHH
Q 010196 442 D-EVKRF-KKLLQK 453 (515)
Q Consensus 442 ~-d~~~~-~~~~~~ 453 (515)
. ....+ +.+++.
T Consensus 783 R~~~k~Yg~~~l~s 796 (820)
T PRK07246 783 RILTKSYGKQILAS 796 (820)
T ss_pred cccccHHHHHHHHh
Confidence 3 22333 444444
No 115
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.90 E-value=6.1e-20 Score=190.34 Aligned_cols=152 Identities=22% Similarity=0.302 Sum_probs=123.0
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC
Q 010196 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (515)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~ 393 (515)
...+...+...+... .+.++||||+++..++.+++.|...+ +++..+||++++.+|..+++.|+.|++.|+|||+
T Consensus 428 ~~~q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~g---i~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~ 504 (652)
T PRK05298 428 TKGQVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELG---IKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (652)
T ss_pred ccccHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcc---eeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeC
Confidence 344566666666543 46789999999999999999999866 8999999999999999999999999999999999
Q ss_pred CccccCCCCCCCEEEEccC-----CCChhhhHHhhhhcccCCCCccEEEEeec---------hhHHHHHHHHHHhcCCCC
Q 010196 394 AMTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHK---------DEVKRFKKLLQKADNDSC 459 (515)
Q Consensus 394 ~~~~GiDi~~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~---------~d~~~~~~~~~~~~~~~~ 459 (515)
++++|+|+|++++||+++. |.+..+|+||+||+||. ..|.+++|++. .|....+++...++.
T Consensus 505 ~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~-~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--- 580 (652)
T PRK05298 505 LLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-VNGKVILYADKITDSMQKAIDETERRREIQIAYNE--- 580 (652)
T ss_pred HHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCC-CCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhh---
Confidence 9999999999999999885 78999999999999996 68999999984 455555555544432
Q ss_pred CccCCChhhHhhhHH
Q 010196 460 PIHSIPSSLIESLRP 474 (515)
Q Consensus 460 ~~~~~~~~~~~~~~~ 474 (515)
....+|....+.+..
T Consensus 581 ~~~~~~~~~~~~~~~ 595 (652)
T PRK05298 581 EHGITPKTIKKKIRD 595 (652)
T ss_pred ccCCCChhHHHHHHH
Confidence 223445444444433
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.89 E-value=4.1e-21 Score=191.85 Aligned_cols=355 Identities=17% Similarity=0.194 Sum_probs=219.2
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|++.|.-+.-.+. .| -+.++.||.|||+++.+|+......+ ..+.+++|+..||.|-++++..+.
T Consensus 75 lg~-r~ydvQlig~l~Ll----~G--~VaEM~TGEGKTLvA~l~a~l~AL~G----~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 75 LGL-RPFDVQLLGALRLL----AG--DVIEMATGEGKTLAGAIAAAGYALQG----RRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred cCC-CcchHHHHHHHHHh----CC--CcccccCCCCHHHHHHHHHHHHHHcC----CCeEEEcCCHHHHHHHHHHHHHHH
Confidence 566 79999987765443 24 48899999999999999988776654 379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+|++|+++.++.+..+.... -.+||+++|..-| .++|+..- ......+.
T Consensus 144 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~ 200 (764)
T PRK12326 144 EALGLTVGWITEESTPEERRAA-----------------------YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPD 200 (764)
T ss_pred HhcCCEEEEECCCCCHHHHHHH-----------------------HcCCCEEcCCcccccccchhhhccChHhhcCCccc
Confidence 9999999999998776544322 2469999998765 23333211 12245688
Q ss_pred EEEEcchhHHHHH---------------HHHhHHHHHHhhcccCccc---------ccCC------------cccccccc
Q 010196 200 YLVVDETDRLLRE---------------AYQAWLPTVLQLTRSDNEN---------RFSD------------ASTFLPSA 243 (515)
Q Consensus 200 ~vViDEah~l~~~---------------~~~~~~~~i~~~~~~~~~~---------~~~~------------~~~~~~~~ 243 (515)
+.|+||+|.++-+ .....+..+...+.....- .+++ ...+....
T Consensus 201 faIVDEvDSiLIDeArtPLiISg~~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~ 280 (764)
T PRK12326 201 VAIIDEADSVLVDEALVPLVLAGSTPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEH 280 (764)
T ss_pred eeeecchhhheeccccCceeeeCCCcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcch
Confidence 9999999987532 1112222222222211000 0000 00000000
Q ss_pred ----ccc----h---hhhhc-----------------c---ccccCCCC------------CCCC---------------
Q 010196 244 ----FGS----L---KTIRR-----------------C---GVERGFKD------------KPYP--------------- 265 (515)
Q Consensus 244 ----~~~----~---~~~~~-----------------~---~~~~~~~~------------~~~~--------------- 265 (515)
... + ..+.+ + ...+.+.+ ..-+
T Consensus 281 ~~~~~~~i~~AL~A~~l~~~d~dYiV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr 360 (764)
T PRK12326 281 VGTTLTQVNVALHAHALLQRDVHYIVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIG 360 (764)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHH
Confidence 000 0 00000 0 00000000 0000
Q ss_pred -ceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCCh
Q 010196 266 -RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (515)
Q Consensus 266 -~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (515)
-.....||+|......++...+-.+.+.+.+. .+.. ..-..-.+......|...+.+.+.. ..+.|+||.+.|+
T Consensus 361 ~Y~kLsGMTGTa~t~~~Ef~~iY~l~Vv~IPtn--kp~~-R~d~~d~iy~t~~~k~~Aii~ei~~~~~~GrPVLVgt~sI 437 (764)
T PRK12326 361 RYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPN--KPNI-REDEADRVYATAAEKNDAIVEHIAEVHETGQPVLVGTHDV 437 (764)
T ss_pred hcchheeecCCChhHHHHHHHHhCCcEEECCCC--CCce-eecCCCceEeCHHHHHHHHHHHHHHHHHcCCCEEEEeCCH
Confidence 00245666666544444444332222222221 1111 0011112333445566666666543 3688999999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC-ceEEEecCCccccCCCCC---------------CCE
Q 010196 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG---------------VNN 406 (515)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~-~~vLv~T~~~~~GiDi~~---------------v~~ 406 (515)
...+.+.+.|...+ ++..++++.....+- +++. ..|. -.|.|||++++||.||.- ==+
T Consensus 438 ~~SE~ls~~L~~~g---I~h~vLNAk~~~~EA-~IIa--~AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GGLh 511 (764)
T PRK12326 438 AESEELAERLRAAG---VPAVVLNAKNDAEEA-RIIA--EAGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGGLH 511 (764)
T ss_pred HHHHHHHHHHHhCC---CcceeeccCchHhHH-HHHH--hcCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCCcE
Confidence 99999999999876 778888887544332 2332 2343 478999999999999862 128
Q ss_pred EEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 407 VVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 407 VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
||....|.|.+--.|..||+||.|.+|.+.+|++-+|
T Consensus 512 VIgTerheSrRID~QLrGRaGRQGDpGss~f~lSleD 548 (764)
T PRK12326 512 VIGTGRHRSERLDNQLRGRAGRQGDPGSSVFFVSLED 548 (764)
T ss_pred EEeccCCchHHHHHHHhcccccCCCCCceeEEEEcch
Confidence 9999999999999999999999999999999999877
No 117
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.89 E-value=5.2e-22 Score=193.28 Aligned_cols=307 Identities=21% Similarity=0.280 Sum_probs=200.3
Q ss_pred HhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-CcccEEEEcccHHHHHHHHHHHH-HhccccCcEEEEeecCC
Q 010196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQS 139 (515)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~v~~~~g~~ 139 (515)
++..+..++-+++.++||||||.. +-++|.+... ...++-+.=|.|-=|.-+++... +..-.+|-.|+...--.
T Consensus 59 il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFe 134 (674)
T KOG0922|consen 59 ILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFE 134 (674)
T ss_pred HHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEec
Confidence 344445578899999999999986 3344544332 22344444588766666655443 23222333333322111
Q ss_pred chHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHH
Q 010196 140 SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLP 219 (515)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~ 219 (515)
+ .......|.++|-|.|++-+..++. ++.+++||+||||.= .-..+.+-
T Consensus 135 d---------------------------~ts~~TrikymTDG~LLRE~l~Dp~--LskYsvIIlDEAHER--sl~TDiLl 183 (674)
T KOG0922|consen 135 D---------------------------STSKDTRIKYMTDGMLLREILKDPL--LSKYSVIILDEAHER--SLHTDILL 183 (674)
T ss_pred c---------------------------cCCCceeEEEecchHHHHHHhcCCc--cccccEEEEechhhh--hhHHHHHH
Confidence 1 0112358999999999988876543 678999999999951 11112233
Q ss_pred HHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCc
Q 010196 220 TVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (515)
Q Consensus 220 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
.+++.+... .+.++.+++|||+ +...+...+...|+....+.
T Consensus 184 GlLKki~~~-----------------------------------R~~LklIimSATl--da~kfS~yF~~a~i~~i~GR- 225 (674)
T KOG0922|consen 184 GLLKKILKK-----------------------------------RPDLKLIIMSATL--DAEKFSEYFNNAPILTIPGR- 225 (674)
T ss_pred HHHHHHHhc-----------------------------------CCCceEEEEeeee--cHHHHHHHhcCCceEeecCC-
Confidence 333322211 1335889999998 45555555555455444332
Q ss_pred cccCCcccceeEEeccCCC----cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCC-----ceeEEEccCccC
Q 010196 300 RYKLPERLESYKLICESKL----KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQR 370 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~----k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-----~~~v~~~~~~~~ 370 (515)
.++ ++.++...+..+ ....+.++....+.+-+|||....++.+.+++.|.+.... ..-+..+||.++
T Consensus 226 ~fP----Vei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~ 301 (674)
T KOG0922|consen 226 TFP----VEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALP 301 (674)
T ss_pred CCc----eeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCC
Confidence 111 122222222111 1223344444567789999999999999999999764211 113567999999
Q ss_pred HHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC------------------CCChhhhHHhhhhcccCCCC
Q 010196 371 QSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 371 ~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~ 432 (515)
.++..++.+.-..|..+|+++|++++..+-+|++..||.-++ |-|-.+-.||.|||||.| +
T Consensus 302 ~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~-p 380 (674)
T KOG0922|consen 302 SEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTG-P 380 (674)
T ss_pred HHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCC-C
Confidence 999999988888899999999999999999999999998553 456677889999999996 9
Q ss_pred ccEEEEeechhHHH
Q 010196 433 GRCFTLLHKDEVKR 446 (515)
Q Consensus 433 g~~~~~~~~~d~~~ 446 (515)
|.|+-++++++.+.
T Consensus 381 GkcyRLYte~~~~~ 394 (674)
T KOG0922|consen 381 GKCYRLYTESAYDK 394 (674)
T ss_pred ceEEEeeeHHHHhh
Confidence 99999999988643
No 118
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.88 E-value=2.1e-22 Score=206.47 Aligned_cols=372 Identities=19% Similarity=0.197 Sum_probs=240.4
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
.++|.+|.+.+.+++..-..++++|+...+|.|||+.-+ ..+..|.....-.+..|||||...+ ..|.++|..|.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti-~fl~~l~~~~~~~gpflvvvplst~-~~W~~ef~~w~--- 443 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTI-TFLSYLFHSLQIHGPFLVVVPLSTI-TAWEREFETWT--- 443 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHH-HHHHHHHHhhhccCCeEEEeehhhh-HHHHHHHHHHh---
Confidence 479999999998887766778999999999999998743 3555554433223358999998665 45888888886
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
+.++.+++|........+.+.-..... .-.-.++++++|++.++.--.. +.--.+.++++||||+
T Consensus 444 ~mn~i~y~g~~~sr~~i~~ye~~~~~~------------~~~lkf~~lltTye~~LkDk~~---L~~i~w~~~~vDeahr 508 (1373)
T KOG0384|consen 444 DMNVIVYHGNLESRQLIRQYEFYHSSN------------TKKLKFNALLTTYEIVLKDKAE---LSKIPWRYLLVDEAHR 508 (1373)
T ss_pred hhceeeeecchhHHHHHHHHHheecCC------------ccccccceeehhhHHHhccHhh---hccCCcceeeecHHhh
Confidence 688889999887666555442111100 0011369999999988653322 2223578999999999
Q ss_pred HHHHH----------------------HHhHHHHHHhhcccCcccccCCcccccccc-------ccchhhhhccccccCC
Q 010196 209 LLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSA-------FGSLKTIRRCGVERGF 259 (515)
Q Consensus 209 l~~~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~ 259 (515)
+-+.. .+..+..+..++....++.|..+..+.... ...+..+......+..
T Consensus 509 LkN~~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~ 588 (1373)
T KOG0384|consen 509 LKNDESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRL 588 (1373)
T ss_pred cCchHHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHH
Confidence 75321 123345555555555555565555544433 1112111111111111
Q ss_pred CC-----CCCCceee--EEEEEEe--------cCCchh-----------------hhhcccCCCeeEeeCCccccCCc--
Q 010196 260 KD-----KPYPRLVK--MVLSATL--------TQDPNK-----------------LAQLDLHHPLFLTTGETRYKLPE-- 305 (515)
Q Consensus 260 ~~-----~~~~~~~~--i~~SaT~--------~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~-- 305 (515)
+. .+...-++ |-+|+-- ..+... -.+...++|..+.......--..
T Consensus 589 kkdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~ 668 (1373)
T KOG0384|consen 589 KKDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRD 668 (1373)
T ss_pred HhhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhh
Confidence 11 11111111 1222110 000000 01112334444433211100000
Q ss_pred --ccceeEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHH
Q 010196 306 --RLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (515)
Q Consensus 306 --~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f 381 (515)
.-..+........|+.+|-++|.+. .++++|||..-+...+.|+++|...+ ++.-.+.|.+..+-|.++++.|
T Consensus 669 ~~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~---ypfQRLDGsvrgelRq~AIDhF 745 (1373)
T KOG0384|consen 669 KMRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRG---YPFQRLDGSVRGELRQQAIDHF 745 (1373)
T ss_pred cchHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcC---CcceeccCCcchHHHHHHHHhc
Confidence 0012222334566777777777655 46899999999999999999999877 8999999999999999999999
Q ss_pred hc---CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC--ccEEEEeechh
Q 010196 382 RE---GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDE 443 (515)
Q Consensus 382 ~~---g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d 443 (515)
.. .+...|+||.+.+.|||+..++.||+||..|+|..-+|+..||+|.|+. -.+|-+++.+.
T Consensus 746 nap~SddFvFLLSTRAGGLGINLatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 746 NAPDSDDFVFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred cCCCCCceEEEEecccCcccccccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 84 4577899999999999999999999999999999999999999999998 45677787764
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=1.2e-21 Score=183.30 Aligned_cols=315 Identities=20% Similarity=0.199 Sum_probs=208.8
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..+||+|++++..++.+. +.+..+|..|+|+|||++-+-++. .+ ..++|+++.+.--++||...++.|..--
T Consensus 301 t~iRpYQEksL~KMFGNg-RARSGiIVLPCGAGKtLVGvTAa~-ti------kK~clvLcts~VSVeQWkqQfk~wsti~ 372 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKTLVGVTAAC-TI------KKSCLVLCTSAVSVEQWKQQFKQWSTIQ 372 (776)
T ss_pred cccCchHHHHHHHHhCCC-cccCceEEEecCCCCceeeeeeee-ee------cccEEEEecCccCHHHHHHHHHhhcccC
Confidence 359999999999988754 235677888999999998654333 22 2379999999999999999999997665
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCc-------CCCCCcceEE
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR-------GFTLEHLCYL 201 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-------~~~~~~~~~v 201 (515)
+-.++.++++.. .....++.|+|+|+.++..--.+.. .+.-..+.++
T Consensus 373 d~~i~rFTsd~K--------------------------e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGll 426 (776)
T KOG1123|consen 373 DDQICRFTSDAK--------------------------ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLL 426 (776)
T ss_pred ccceEEeecccc--------------------------ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeE
Confidence 566666666543 1234678999999877643211100 0123468899
Q ss_pred EEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCch
Q 010196 202 VVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN 281 (515)
Q Consensus 202 ViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~ 281 (515)
++||+|.+...-|...+.-+-.++ .+.++||+..+-+
T Consensus 427 llDEVHvvPA~MFRRVlsiv~aHc-------------------------------------------KLGLTATLvREDd 463 (776)
T KOG1123|consen 427 LLDEVHVVPAKMFRRVLSIVQAHC-------------------------------------------KLGLTATLVREDD 463 (776)
T ss_pred EeehhccchHHHHHHHHHHHHHHh-------------------------------------------hccceeEEeeccc
Confidence 999999987777777666665553 2678888876554
Q ss_pred hhhhc-ccCCCeeEeeCC--------------------------ccccCCcccceeEEeccCCCcHHHHHHHHHh--cCC
Q 010196 282 KLAQL-DLHHPLFLTTGE--------------------------TRYKLPERLESYKLICESKLKPLYLVALLQS--LGE 332 (515)
Q Consensus 282 ~~~~~-~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~ 332 (515)
.+..+ ++-.|..+...= ..+-....-...........|+..-.-+++. ..+
T Consensus 464 KI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqfLI~~HE~Rg 543 (776)
T KOG1123|consen 464 KITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQFLIKFHERRG 543 (776)
T ss_pred cccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHHHHHHHHhcC
Confidence 44433 233333322110 0000000000111112233444443333332 257
Q ss_pred CeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC-CceEEEecCCccccCCCCCCCEEEEcc
Q 010196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVLVSSDAMTRGMDVEGVNNVVNYD 411 (515)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g-~~~vLv~T~~~~~GiDi~~v~~VI~~~ 411 (515)
.++|||...+-...+.+-.|.. -.+.|..++.+|.++++.|+-+ .++.++.+.+....+|+|.++++|+..
T Consensus 544 DKiIVFsDnvfALk~YAikl~K--------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQIS 615 (776)
T KOG1123|consen 544 DKIIVFSDNVFALKEYAIKLGK--------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQIS 615 (776)
T ss_pred CeEEEEeccHHHHHHHHHHcCC--------ceEECCCchhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEc
Confidence 8999999887666666555532 2466999999999999999954 688899999999999999999999987
Q ss_pred CC-CChhhhHHhhhhcccCCCC------ccEEEEeechhHHHHH
Q 010196 412 KP-AYIKTYIHRAGRTARAGQL------GRCFTLLHKDEVKRFK 448 (515)
Q Consensus 412 ~p-~s~~~~~Qr~GR~gR~g~~------g~~~~~~~~~d~~~~~ 448 (515)
.. .|.++-.||+||..|+.+. ...+.+++.+..+++-
T Consensus 616 SH~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTqEM~Y 659 (776)
T KOG1123|consen 616 SHGGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQEMYY 659 (776)
T ss_pred ccccchHHHHHHHHHHHHHhhcCccccceeeeeeeecchHHHHh
Confidence 54 5678889999999997432 3445666666555543
No 120
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.88 E-value=2.1e-21 Score=191.17 Aligned_cols=369 Identities=18% Similarity=0.159 Sum_probs=229.9
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..+.+||++++.++.+....+...|+...+|.|||...+ ..+..|.....-...+|||||. .++.||.+++..|.+.
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQii-sFLaaL~~S~k~~~paLIVCP~-Tii~qW~~E~~~w~p~- 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQII-SFLAALHHSGKLTKPALIVCPA-TIIHQWMKEFQTWWPP- 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHH-HHHHHHhhcccccCceEEEccH-HHHHHHHHHHHHhCcc-
Confidence 468999999999988766778889999999999998743 3444443331222469999998 7889999999999886
Q ss_pred CcEEEEeecCCchHH--HHHHHhccCcccccccCCchh-HHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 129 GLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPED-VLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
.+|.+++|..+... ..... ..... +.+......+|+|+|++.|.-. . ..+.-..++++|+||
T Consensus 281 -~rv~ilh~t~s~~r~~~~~~~-----------~~~~~~L~r~~~~~~~ilitty~~~r~~--~-d~l~~~~W~y~ILDE 345 (923)
T KOG0387|consen 281 -FRVFILHGTGSGARYDASHSS-----------HKKDKLLIRKVATDGGILITTYDGFRIQ--G-DDLLGILWDYVILDE 345 (923)
T ss_pred -eEEEEEecCCcccccccchhh-----------hhhhhhheeeecccCcEEEEehhhhccc--C-cccccccccEEEecC
Confidence 67777777665211 00000 00000 0011112357999998876322 1 223344689999999
Q ss_pred hhHHHHHH----------------------HHhHHHHHHhhcccCcccccCCcccccccccc---------c--------
Q 010196 206 TDRLLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFG---------S-------- 246 (515)
Q Consensus 206 ah~l~~~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~---------~-------- 246 (515)
.|++-+.+ ++..+.+++.++....++.+.....|...+-. .
T Consensus 346 GH~IrNpns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~a 425 (923)
T KOG0387|consen 346 GHRIRNPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTA 425 (923)
T ss_pred cccccCCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHH
Confidence 99874322 22333444433333333332222222111100 0
Q ss_pred -------hhhhhcccc----ccCC-CCCCCCceeeEEEEEEecCCchhhhh--------------------------ccc
Q 010196 247 -------LKTIRRCGV----ERGF-KDKPYPRLVKMVLSATLTQDPNKLAQ--------------------------LDL 288 (515)
Q Consensus 247 -------~~~~~~~~~----~~~~-~~~~~~~~~~i~~SaT~~~~~~~~~~--------------------------~~~ 288 (515)
...+.+... .... ...+...-++++++-|.... .+.. ..+
T Consensus 426 ykca~~Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR--~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkIC 503 (923)
T KOG0387|consen 426 YKCAVALRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQR--RLYQRFLNSSEVNKILNGKRNCLSGIDILRKIC 503 (923)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHH--HHHHHHhhhHHHHHHHcCCccceechHHHHhhc
Confidence 001111100 0011 13344455667777775321 1111 112
Q ss_pred CCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEcc
Q 010196 289 HHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYS 366 (515)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~ 366 (515)
++|..+...... ..... -+.-......|...+..++.. ..+.++|+|..++.....+...|... .++.+..+.
T Consensus 504 nHPdll~~~~~~--~~~~~-D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~--~~ysylRmD 578 (923)
T KOG0387|consen 504 NHPDLLDRRDED--EKQGP-DYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRA--KGYSYLRMD 578 (923)
T ss_pred CCcccccCcccc--cccCC-CcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhc--CCceEEEec
Confidence 233333222100 00000 011223445677888887764 35779999999999999999999841 238999999
Q ss_pred CccCHHHHHHHHHHHhcCCc--eEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE--EEEeech
Q 010196 367 GLQRQSVRSKTLKAFREGKI--QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKD 442 (515)
Q Consensus 367 ~~~~~~~r~~~l~~f~~g~~--~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~ 442 (515)
|..+...|..++++|+++.. -.|++|.+.+-|+|+.+++.||+||+.|+|..-.|..-|+.|.|++-.| |-+++..
T Consensus 579 GtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~g 658 (923)
T KOG0387|consen 579 GTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAG 658 (923)
T ss_pred CCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCC
Confidence 99999999999999998763 3489999999999999999999999999999999999999999998544 4445544
No 121
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.87 E-value=3.3e-20 Score=190.02 Aligned_cols=355 Identities=18% Similarity=0.213 Sum_probs=214.7
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|+++|.-. .+.....-|..+.||.|||+++.+|++-....+ ..+.+++|+..||.|-++++..+.
T Consensus 79 lGm-~~ydVQliG------g~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al~G----~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 79 MGM-RHFDVQLIG------GMTLHEGKIAEMRTGEGKTLVGTLAVYLNALSG----KGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred hCC-CcchhHHHh------hhHhccCccccccCCCCChHHHHHHHHHHHHcC----CCEEEEeCCHHHHHHHHHHHHHHh
Confidence 564 688888543 333456779999999999999999998666554 379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcC-----CCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (515)
..+|++|+++.++.+..+....+ .++|+++|..-| .++|+..-. .....+.
T Consensus 148 ~~lGl~v~~i~~~~~~~err~~Y-----------------------~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~ 204 (913)
T PRK13103 148 EFLGLSVGIVTPFQPPEEKRAAY-----------------------AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELN 204 (913)
T ss_pred cccCCEEEEECCCCCHHHHHHHh-----------------------cCCEEEEcccccccchhhccceechhhhcccccc
Confidence 99999999999987765543221 269999998876 444443211 1236789
Q ss_pred EEEEcchhHHHHH----------------HHHhHHHHHHhhcccC---------ccccc-----------CCcc-----c
Q 010196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD---------NENRF-----------SDAS-----T 238 (515)
Q Consensus 200 ~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~---------~~~~~-----------~~~~-----~ 238 (515)
++||||+|.++=+ .....+..+...+... ....+ ++.. .
T Consensus 205 ~aIVDEvDsiLIDEArtPLIISg~~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~ 284 (913)
T PRK13103 205 FAVIDEVDSILIDEARTPLIISGQAEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEE 284 (913)
T ss_pred eeEechhhheeccccCCceeecCCCccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHH
Confidence 9999999987521 1111122222222100 00000 0000 0
Q ss_pred cc---------cccc-----cchhh----hh--------------------------ccccccCCCC------------C
Q 010196 239 FL---------PSAF-----GSLKT----IR--------------------------RCGVERGFKD------------K 262 (515)
Q Consensus 239 ~~---------~~~~-----~~~~~----~~--------------------------~~~~~~~~~~------------~ 262 (515)
++ ...+ ..+.. ++ +....+.+.+ .
T Consensus 285 ~~~~~~i~~~~~~ly~~~~~~~~~~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~ 364 (913)
T PRK13103 285 MLTQAGLLAEGESLYSAHNLGLLTHVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLN 364 (913)
T ss_pred HhhhCCCcccchhccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCC
Confidence 00 0000 00000 00 0000000000 0
Q ss_pred CCCc----------------eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHH
Q 010196 263 PYPR----------------LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVAL 326 (515)
Q Consensus 263 ~~~~----------------~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ 326 (515)
.-+. ....+||+|......++...+-.+.+.+.+.. +.. ..-..-.+......|...+.+.
T Consensus 365 I~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~te~~Ef~~iY~l~Vv~IPTnk--P~~-R~D~~d~vy~t~~eK~~Ai~~e 441 (913)
T PRK13103 365 IQAESQTLASTTFQNYFRLYNKLSGMTGTADTEAFEFRQIYGLDVVVIPPNK--PLA-RKDFNDLVYLTAEEKYAAIITD 441 (913)
T ss_pred cCCCceeEEeehHHHHHHhcchhccCCCCCHHHHHHHHHHhCCCEEECCCCC--Ccc-cccCCCeEEcCHHHHHHHHHHH
Confidence 0000 01234555543333333333222222222211 011 0111112334455676666666
Q ss_pred HHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC-ceEEEecCCccccCCCC-
Q 010196 327 LQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVE- 402 (515)
Q Consensus 327 l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~-~~vLv~T~~~~~GiDi~- 402 (515)
+.. ..+.|+||-+.|+...+.+++.|...+ ++..+++......+-+ ++. ..|. -.|.|||++++||.||.
T Consensus 442 i~~~~~~GrPVLVGT~SVe~SE~ls~~L~~~g---i~h~VLNAk~~~~EA~-IIa--~AG~~GaVTIATNMAGRGTDIkL 515 (913)
T PRK13103 442 IKECMALGRPVLVGTATIETSEHMSNLLKKEG---IEHKVLNAKYHEKEAE-IIA--QAGRPGALTIATNMAGRGTDILL 515 (913)
T ss_pred HHHHHhCCCCEEEEeCCHHHHHHHHHHHHHcC---CcHHHhccccchhHHH-HHH--cCCCCCcEEEeccCCCCCCCEec
Confidence 653 358899999999999999999999876 6666676664433322 222 3443 47899999999999994
Q ss_pred ------------------------------------CCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 403 ------------------------------------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 403 ------------------------------------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
+==+||-...|.|.+--.|..||+||.|.+|.+.+|++-+|
T Consensus 516 g~n~~~~~~~~~~~~~~~~~~~~~~~~~~~e~V~e~GGLhVIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSlED 592 (913)
T PRK13103 516 GGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 592 (913)
T ss_pred CCchHHHHHhhhhhhHHHHHHHHHHHHhHHHHHHHcCCCEEEeeccCchHHHHHHhccccccCCCCCceEEEEEcCc
Confidence 11278888899999999999999999999999999998766
No 122
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.86 E-value=2.1e-19 Score=181.69 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=70.9
Q ss_pred hHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc-cc--cCcE
Q 010196 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA-PA--VGLS 131 (515)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~--~~~~ 131 (515)
|.+.+..+...+..++.+++.||||+|||++|++|++..+... .+.+++|++||++|++|+.+.+..+. .. ..++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~--~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~ 79 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER--PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQ 79 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc--cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCee
Confidence 7788888777777889999999999999999999999887642 24589999999999999999988877 33 3577
Q ss_pred EEEeecCCch
Q 010196 132 VGLAVGQSSI 141 (515)
Q Consensus 132 v~~~~g~~~~ 141 (515)
+..+.|..++
T Consensus 80 ~~~lkGr~nY 89 (636)
T TIGR03117 80 AGFFPGSQEF 89 (636)
T ss_pred EEEEECCccc
Confidence 8888888764
No 123
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.86 E-value=4e-20 Score=186.90 Aligned_cols=354 Identities=19% Similarity=0.105 Sum_probs=199.7
Q ss_pred CcchhhHHHHHHHhCCCCC------CCCEEEECCCCchhHHHhHHHHHHHhhhcccC---cccEEEEcccHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLF------ERDLCINSPTGSGKTLSYALPIVQTLSNRAVR---CLRALVVLPTRDLALQVKDV 120 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~------~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~---~~~~lil~Pt~~L~~q~~~~ 120 (515)
.++|+|.+.+.-+...+.. ....|+...+|+|||+..+.-++..+...+.. -.+.|||+|. .|+..|.++
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkkE 316 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKKE 316 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHHH
Confidence 5899999999877765432 23578899999999998777677777665431 1478999997 899999999
Q ss_pred HHHhccccCcEEEEeecCCchHHHH-HHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcce
Q 010196 121 FAAIAPAVGLSVGLAVGQSSIADEI-SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (515)
Q Consensus 121 ~~~~~~~~~~~v~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 199 (515)
|.+|.....+....++|..+..... ..+.. .........|.+.+++.+.+++.. +....++
T Consensus 317 F~KWl~~~~i~~l~~~~~~~~~w~~~~sil~---------------~~~~~~~~~vli~sye~~~~~~~~---il~~~~g 378 (776)
T KOG0390|consen 317 FGKWLGNHRINPLDFYSTKKSSWIKLKSILF---------------LGYKQFTTPVLIISYETASDYCRK---ILLIRPG 378 (776)
T ss_pred HHHhccccccceeeeecccchhhhhhHHHHH---------------hhhhheeEEEEeccHHHHHHHHHH---HhcCCCC
Confidence 9999876567777777776631000 00000 000112346888888888776655 3456789
Q ss_pred EEEEcchhHHHHHH----------------------HHhHHHHHHhhcccCcccccCCccccccccccchhhhhcccccc
Q 010196 200 YLVVDETDRLLREA----------------------YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (515)
Q Consensus 200 ~vViDEah~l~~~~----------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
++|+||.|++-+.. ++..+.+++..+... +|..+++....+......
T Consensus 379 lLVcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fv-----------rP~~Lgs~~sf~k~~~~~ 447 (776)
T KOG0390|consen 379 LLVCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFV-----------RPGFLGSISSFKKKFEIP 447 (776)
T ss_pred eEEECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhc-----------ChhhccchHHHHHHhhcc
Confidence 99999999863321 112222222222221 222222221111110000
Q ss_pred CC------------------------------------CCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccc
Q 010196 258 GF------------------------------------KDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (515)
Q Consensus 258 ~~------------------------------------~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (515)
.. ...+.|..+-..+-.-++.-...+....+... .. ......
T Consensus 448 i~~~~~~~~s~e~~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~-~~-~~~~~~ 525 (776)
T KOG0390|consen 448 ILRGRDADASEEDREREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM-KM-RTLKGY 525 (776)
T ss_pred cccccCCCcchhhhhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH-Hh-hhhhcc
Confidence 00 00011111111110000000001111111110 00 000000
Q ss_pred cC------------Cccc------------------------ceeEEeccCCCcHHHHHHHHHhc---CCCeEEEEcCCh
Q 010196 302 KL------------PERL------------------------ESYKLICESKLKPLYLVALLQSL---GEEKCIVFTSSV 342 (515)
Q Consensus 302 ~~------------~~~~------------------------~~~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~~s~ 342 (515)
.+ |..+ +..........++..|..++... ...++.+..|-+
T Consensus 526 ~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~ 605 (776)
T KOG0390|consen 526 ALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYT 605 (776)
T ss_pred hhhHHHHHHHHhcCHHhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHH
Confidence 00 0000 00000001122333444444222 122333333444
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC---ceEEEecCCccccCCCCCCCEEEEccCCCChhhh
Q 010196 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTY 419 (515)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~---~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~ 419 (515)
...+.+....+.. +..+..+||.|+..+|+.+++.|++.. .-.|.+|.+.++||++-+++.||.||++|+|..-
T Consensus 606 ~tldl~e~~~~~~---g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d 682 (776)
T KOG0390|consen 606 QTLDLFEQLCRWR---GYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVD 682 (776)
T ss_pred HHHHHHHHHHhhc---CceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhH
Confidence 4444444444433 489999999999999999999999653 3457889999999999999999999999999999
Q ss_pred HHhhhhcccCCCCccEEEE
Q 010196 420 IHRAGRTARAGQLGRCFTL 438 (515)
Q Consensus 420 ~Qr~GR~gR~g~~g~~~~~ 438 (515)
.|+++|+.|.|++-.|++|
T Consensus 683 ~QAmaR~~RdGQKk~v~iY 701 (776)
T KOG0390|consen 683 QQAMARAWRDGQKKPVYIY 701 (776)
T ss_pred HHHHHHhccCCCcceEEEE
Confidence 9999999999999777665
No 124
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.86 E-value=1.9e-20 Score=184.36 Aligned_cols=373 Identities=21% Similarity=0.221 Sum_probs=231.1
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
|+ ++.+||.-.+.++.-....+-+.|+...+|.|||.. +++.+.+|.+.+.++| -|||||...| +.|.++|.+|||
T Consensus 397 ~i-~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gp-HLVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 397 GI-QLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGP-HLVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred CC-cccchhhhhHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCC-cEEEecchhH-HHHHHHHHHhCC
Confidence 44 489999999887654444567789999999999986 4557777777655554 6999999665 669999999999
Q ss_pred ccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcch
Q 010196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (515)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEa 206 (515)
. +.|...+|........+...+.. ...++|+++|+.....--.....+...+++++|+||+
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~-----------------~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKN-----------------KDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhcc-----------------CCCccEEEEEeecccCChHHHHHHHhccccEEEecch
Confidence 5 78899999887666665543221 2357999999876542211111234457899999999
Q ss_pred hHHHHHHHHh----------------------HHHHHHhhcccCcccccCCccccccccccch-----------------
Q 010196 207 DRLLREAYQA----------------------WLPTVLQLTRSDNENRFSDASTFLPSAFGSL----------------- 247 (515)
Q Consensus 207 h~l~~~~~~~----------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 247 (515)
|.+-+..... .+.+++.++...-+..|......+...+..-
T Consensus 534 HmLKN~~SeRy~~LM~I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerI 613 (941)
T KOG0389|consen 534 HMLKNRTSERYKHLMSINANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERI 613 (941)
T ss_pred hhhhccchHHHHHhccccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHH
Confidence 9765433221 1222222222222222222211111111100
Q ss_pred ---hhhhccccccCC-----CCCCCCcee---eEEEEEEecCCchhhhhc-------------------------ccCCC
Q 010196 248 ---KTIRRCGVERGF-----KDKPYPRLV---KMVLSATLTQDPNKLAQL-------------------------DLHHP 291 (515)
Q Consensus 248 ---~~~~~~~~~~~~-----~~~~~~~~~---~i~~SaT~~~~~~~~~~~-------------------------~~~~~ 291 (515)
+.+....+.|+. ++.| |..+ .+.||..-..-...++.. .-.+|
T Consensus 614 srAK~im~PFILRR~K~qVL~~LP-pK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHP 692 (941)
T KOG0389|consen 614 SRAKTIMKPFILRRLKSQVLKQLP-PKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHP 692 (941)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcC-CccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcCh
Confidence 000000111111 1111 1111 122333211111111110 11122
Q ss_pred eeEeeCCccc---------------------------------cCCcccceeE---------EeccCCCcHHHHHHHHHh
Q 010196 292 LFLTTGETRY---------------------------------KLPERLESYK---------LICESKLKPLYLVALLQS 329 (515)
Q Consensus 292 ~~~~~~~~~~---------------------------------~~~~~~~~~~---------~~~~~~~k~~~l~~~l~~ 329 (515)
..++.-+... .+.....++. -..-...|...|..+|..
T Consensus 693 LL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~ 772 (941)
T KOG0389|consen 693 LLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPK 772 (941)
T ss_pred hHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHH
Confidence 2111100000 0000000000 011134577778888875
Q ss_pred c--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC--ceEEEecCCccccCCCCCCC
Q 010196 330 L--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDAMTRGMDVEGVN 405 (515)
Q Consensus 330 ~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~--~~vLv~T~~~~~GiDi~~v~ 405 (515)
. .+.++|||.......+.|..+|...+ +....+.|...-.+|+.+++.|..++ .-.|++|.+.+.|||+..++
T Consensus 773 ~k~~G~RVLiFSQFTqmLDILE~~L~~l~---~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An 849 (941)
T KOG0389|consen 773 IKKKGDRVLIFSQFTQMLDILEVVLDTLG---YKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN 849 (941)
T ss_pred HhhcCCEEEEeeHHHHHHHHHHHHHHhcC---ceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc
Confidence 4 46899999999999999999998766 99999999999999999999999765 34589999999999999999
Q ss_pred EEEEccCCCChhhhHHhhhhcccCCCC--ccEEEEeechhHHH
Q 010196 406 NVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKR 446 (515)
Q Consensus 406 ~VI~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d~~~ 446 (515)
+||.+|...+|-.-.|+--|++|.|+. -.++-+++++.++.
T Consensus 850 ~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~TIEE 892 (941)
T KOG0389|consen 850 TVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKSTIEE 892 (941)
T ss_pred eEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCcHHH
Confidence 999999999999999999999999987 45566777776543
No 125
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.85 E-value=3.5e-19 Score=192.03 Aligned_cols=159 Identities=16% Similarity=0.205 Sum_probs=106.2
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH----HHH
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD----VFA 122 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~----~~~ 122 (515)
|| ++||-|.+.+..+...+..++.+++.||||+|||++|++|++..... .+.+++|.++|+.|.+|+.. .++
T Consensus 255 ~~-e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~---~~~~vvIsT~T~~LQ~Ql~~kDiP~L~ 330 (928)
T PRK08074 255 KY-EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK---KEEPVVISTYTIQLQQQLLEKDIPLLQ 330 (928)
T ss_pred CC-cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc---cCCeEEEEcCCHHHHHHHHHhhHHHHH
Confidence 55 79999999988888888888999999999999999999999876653 23479999999999999866 344
Q ss_pred HhccccCcEEEEeecCCchH--HHHHHHhc-----------------------cCcc------------------c---c
Q 010196 123 AIAPAVGLSVGLAVGQSSIA--DEISELIK-----------------------RPKL------------------E---A 156 (515)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~--~~~~~~~~-----------------------~~~~------------------~---~ 156 (515)
+.++ ..+++.++.|..++- ........ .... . +
T Consensus 331 ~~~~-~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~~c 409 (928)
T PRK08074 331 KIFP-FPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGESD 409 (928)
T ss_pred HHcC-CCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCccc
Confidence 4443 256778777776521 01100000 0000 0 0
Q ss_pred -cccCC--chhHH---HhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHH
Q 010196 157 -GICYD--PEDVL---QELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (515)
Q Consensus 157 -~~~~~--~~~~~---~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~ 211 (515)
+..|. ....+ +.-...++|+|++...|+..+..... .+...+++||||||++.+
T Consensus 410 ~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~-ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 410 GGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEP-LLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred CCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcc-cCCCCCeEEEECCchHHH
Confidence 00010 01112 22235689999999988877643222 245678999999999754
No 126
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=1e-18 Score=177.25 Aligned_cols=355 Identities=17% Similarity=0.211 Sum_probs=215.4
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|++.|.-.--. ....-|..+.||-|||+++.+|+.-....+ ..|-|++.+..||..-++++..+.
T Consensus 75 lG~-r~ydVQliGglv------Lh~G~IAEMkTGEGKTLvAtLpayLnAL~G----kgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 75 LGK-RPYDVQIIGGII------LDLGSVAEMKTGEGKTITSIAPVYLNALTG----KGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred hCC-CcCchHHHHHHH------HhcCCeeeecCCCCccHHHHHHHHHHHhcC----CceEEEecchhhhhhhHHHHHHHH
Confidence 565 688888655322 234458999999999999999987554443 369999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCcC-----CCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATRG-----FTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~~-----~~~~~~~ 199 (515)
..+|++|+++..+.+....... -.+||+++|..-| .++|+..-. .....+.
T Consensus 144 ~fLGLsvG~i~~~~~~~~rr~a-----------------------Y~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~ 200 (925)
T PRK12903 144 NFLGLSVGINKANMDPNLKREA-----------------------YACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLN 200 (925)
T ss_pred HHhCCceeeeCCCCChHHHHHh-----------------------ccCCCeeecCcccchhhhhhcccccHHHhcCcccc
Confidence 9999999999887665544322 2469999998776 445543221 1245688
Q ss_pred EEEEcchhHHHHH----------------HHHhHHHHHHhhcccC--------cccccCCc-----ccc--cccccc---
Q 010196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSD--------NENRFSDA-----STF--LPSAFG--- 245 (515)
Q Consensus 200 ~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~--------~~~~~~~~-----~~~--~~~~~~--- 245 (515)
+.|+||+|.++-+ ........+...+... ....+++. ..+ ....+.
T Consensus 201 faIVDEVDSILIDEArTPLIISg~~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n 280 (925)
T PRK12903 201 FCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIEN 280 (925)
T ss_pred eeeeccchheeecccCCcccccCCCccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhh
Confidence 9999999986421 1111122222211110 00000000 000 000000
Q ss_pred ------------chhhhh--------------------ccccccCCCC------------CCCCc---------------
Q 010196 246 ------------SLKTIR--------------------RCGVERGFKD------------KPYPR--------------- 266 (515)
Q Consensus 246 ------------~~~~~~--------------------~~~~~~~~~~------------~~~~~--------------- 266 (515)
....+. +....+.+.. ...+.
T Consensus 281 ~~l~h~i~~AL~A~~lf~rd~dYiV~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~ 360 (925)
T PRK12903 281 SELVHRIQNALRAHKVMKEDVEYIVRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRL 360 (925)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHh
Confidence 000000 0000000000 00000
Q ss_pred -eeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChh
Q 010196 267 -LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE 343 (515)
Q Consensus 267 -~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~ 343 (515)
-...+||+|......++...+-.+.+.+.+... .. ..-..-.+......|...+...+.. ..+.|+||.|.|+.
T Consensus 361 Y~kLsGMTGTA~te~~Ef~~iY~l~Vv~IPTnkP--~~-R~D~~d~iy~t~~~K~~Aii~ei~~~~~~gqPVLVgT~SIe 437 (925)
T PRK12903 361 FKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNKP--VI-RKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVE 437 (925)
T ss_pred cchhhccCCCCHHHHHHHHHHhCCCEEECCCCCC--ee-eeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEeCcHH
Confidence 124567777654444444433222222222111 11 0111112333455666666665553 35789999999999
Q ss_pred hHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC-ceEEEecCCccccCCCCCCC--------EEEEccCCC
Q 010196 344 STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEGVN--------NVVNYDKPA 414 (515)
Q Consensus 344 ~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~-~~vLv~T~~~~~GiDi~~v~--------~VI~~~~p~ 414 (515)
.++.+++.|...+ ++..++++... +++..+=. ..|. -.|.|||++++||.||.--. +||....|.
T Consensus 438 ~SE~ls~~L~~~g---i~h~vLNAk~~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerhe 511 (925)
T PRK12903 438 DSETLHELLLEAN---IPHTVLNAKQN--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAE 511 (925)
T ss_pred HHHHHHHHHHHCC---CCceeecccch--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCc
Confidence 9999999999876 77777887643 33332222 3453 57899999999999997322 899999999
Q ss_pred ChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 415 YIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
|.+---|..||+||.|.+|.+.+|++-.|
T Consensus 512 SrRIDnQLrGRaGRQGDpGss~f~lSLeD 540 (925)
T PRK12903 512 SRRIDNQLRGRSGRQGDVGESRFFISLDD 540 (925)
T ss_pred hHHHHHHHhcccccCCCCCcceEEEecch
Confidence 99989999999999999999999998776
No 127
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.83 E-value=3.2e-18 Score=174.83 Aligned_cols=131 Identities=24% Similarity=0.282 Sum_probs=99.3
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|+ .|++.|.-+ .+...+.-|+.+.||.|||+++.+|+.-.... +..|.|++++..||.+-++++..+.
T Consensus 73 lG~-r~ydvQlig------~l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~----G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 73 LGL-RHFDVQLIG------GLVLNDGKIAEMKTGEGKTLVATLPAYLNALT----GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred hCC-CCCchHhhh------hHhhcCCccccccCCCCchHHHHHHHHHHHhc----CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 576 588988644 23346678999999999999999998644333 3479999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+|++|+++.++.+..+.... -.++|+++|..-| .++|+..- ......+.
T Consensus 142 ~~LGLsvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~ 198 (870)
T CHL00122 142 RFLGLTVGLIQEGMSSEERKKN-----------------------YLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFN 198 (870)
T ss_pred HHcCCceeeeCCCCChHHHHHh-----------------------cCCCCEecCCccccccchhhccCcChHHhhccccc
Confidence 9999999999988876655332 2359999998655 23333221 11245688
Q ss_pred EEEEcchhHHH
Q 010196 200 YLVVDETDRLL 210 (515)
Q Consensus 200 ~vViDEah~l~ 210 (515)
+.|+||+|.++
T Consensus 199 faIVDEvDSiL 209 (870)
T CHL00122 199 YCIIDEVDSIL 209 (870)
T ss_pred eeeeecchhhe
Confidence 99999999875
No 128
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=1.2e-19 Score=182.22 Aligned_cols=147 Identities=20% Similarity=0.130 Sum_probs=99.5
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.|-.||.+.+. ..-.++.++|.|||.+|||++....+-..+... ....+|+++||.+|+.|+...+.......-
T Consensus 511 ~Pd~WQ~elLD----svDr~eSavIVAPTSaGKTfisfY~iEKVLRes--D~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLD----SVDRNESAVIVAPTSAGKTFISFYAIEKVLRES--DSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhh----hhhcccceEEEeeccCCceeccHHHHHHHHhhc--CCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 58899998844 335688899999999999998766666556553 344799999999999999887776542211
Q ss_pred -cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC--cCCCCCcceEEEEcch
Q 010196 130 -LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT--RGFTLEHLCYLVVDET 206 (515)
Q Consensus 130 -~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--~~~~~~~~~~vViDEa 206 (515)
.+...+.|....+.+. -.-+|.|+|+.|+.+-..+... ......+++++|+||+
T Consensus 585 ~~rg~sl~g~ltqEYsi-----------------------np~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEV 641 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSI-----------------------NPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEV 641 (1330)
T ss_pred cccchhhHhhhhHHhcC-----------------------CchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechh
Confidence 1122222222211111 0235899999999998877663 1234678999999999
Q ss_pred hHHHHHHHHhHHHHHHhhc
Q 010196 207 DRLLREAYQAWLPTVLQLT 225 (515)
Q Consensus 207 h~l~~~~~~~~~~~i~~~~ 225 (515)
|.+....-+-..++++-+.
T Consensus 642 H~iG~~ed~l~~Eqll~li 660 (1330)
T KOG0949|consen 642 HLIGNEEDGLLWEQLLLLI 660 (1330)
T ss_pred hhccccccchHHHHHHHhc
Confidence 9986655444455555443
No 129
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.83 E-value=3.4e-19 Score=172.20 Aligned_cols=299 Identities=21% Similarity=0.255 Sum_probs=193.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccC-ccc-EEEEcccHHHHHHHHHHHH-HhccccCcEEEEeecCCchHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLR-ALVVLPTRDLALQVKDVFA-AIAPAVGLSVGLAVGQSSIADE 144 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~-~~~-~lil~Pt~~L~~q~~~~~~-~~~~~~~~~v~~~~g~~~~~~~ 144 (515)
.++-++|.+.||||||.. +=++|...+.. +.+ +=+.-|.|--|..++.... ++.-.+|-.|+. .-..+.
T Consensus 279 e~QVLiI~GeTGSGKTTQ----iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGY----sIRFEd 350 (902)
T KOG0923|consen 279 EHQVLIIVGETGSGKTTQ----IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGY----SIRFED 350 (902)
T ss_pred hCcEEEEEcCCCCCcccc----ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccce----EEEecc
Confidence 467789999999999986 33555554322 223 3344488887777765443 333333322222 111111
Q ss_pred HHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhh
Q 010196 145 ISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (515)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~ 224 (515)
. ..+..-|=++|-|+|+.-+... .++...++|||||||.= .-..+.+..++..
T Consensus 351 c-----------------------TSekTvlKYMTDGmLlREfL~e--pdLasYSViiiDEAHER--TL~TDILfgLvKD 403 (902)
T KOG0923|consen 351 C-----------------------TSEKTVLKYMTDGMLLREFLSE--PDLASYSVIIVDEAHER--TLHTDILFGLVKD 403 (902)
T ss_pred c-----------------------cCcceeeeeecchhHHHHHhcc--ccccceeEEEeehhhhh--hhhhhHHHHHHHH
Confidence 0 1123357799999998876653 45788999999999951 1111222222222
Q ss_pred cccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCC
Q 010196 225 TRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLP 304 (515)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (515)
+.. ..|.+..++.|||+ +...+...+-..|++..++. +++
T Consensus 404 Iar-----------------------------------~RpdLKllIsSAT~--DAekFS~fFDdapIF~iPGR-RyP-- 443 (902)
T KOG0923|consen 404 IAR-----------------------------------FRPDLKLLISSATM--DAEKFSAFFDDAPIFRIPGR-RYP-- 443 (902)
T ss_pred HHh-----------------------------------hCCcceEEeecccc--CHHHHHHhccCCcEEeccCc-ccc--
Confidence 211 12556889999998 55555555555565554432 322
Q ss_pred cccceeEEeccCCCcHHH-HHHHHH---hcCCCeEEEEcCChhhHHHHHHHHhhc----CC--CceeEEEccCccCHHHH
Q 010196 305 ERLESYKLICESKLKPLY-LVALLQ---SLGEEKCIVFTSSVESTHRLCTLLNHF----GE--LRIKIKEYSGLQRQSVR 374 (515)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~-l~~~l~---~~~~~~~lVf~~s~~~~~~l~~~L~~~----~~--~~~~v~~~~~~~~~~~r 374 (515)
+..++...+..+-++. +..+++ ..+.+-+|||....+..+...+.|.+. |. ..+-++.+|+.+|++..
T Consensus 444 --Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQ 521 (902)
T KOG0923|consen 444 --VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQ 521 (902)
T ss_pred --eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHH
Confidence 2233333333332222 222222 335688999999988888777777542 21 33678899999999999
Q ss_pred HHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC------------------CCChhhhHHhhhhcccCCCCccEE
Q 010196 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCF 436 (515)
Q Consensus 375 ~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~ 436 (515)
..+++---.|-.+|++||++++..+-|+++..||.-++ |.|-.+-.||.|||||.| +|.|+
T Consensus 522 akIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtg-PGKCf 600 (902)
T KOG0923|consen 522 AKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTG-PGKCF 600 (902)
T ss_pred HhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCC-CCceE
Confidence 99888888888999999999999999999999997553 345567789999999997 99999
Q ss_pred EEeechhH
Q 010196 437 TLLHKDEV 444 (515)
Q Consensus 437 ~~~~~~d~ 444 (515)
-+++...+
T Consensus 601 RLYt~~aY 608 (902)
T KOG0923|consen 601 RLYTAWAY 608 (902)
T ss_pred Eeechhhh
Confidence 99985543
No 130
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.82 E-value=1.6e-18 Score=178.49 Aligned_cols=320 Identities=19% Similarity=0.245 Sum_probs=208.7
Q ss_pred chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH-HhccccCc
Q 010196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA-AIAPAVGL 130 (515)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~ 130 (515)
+..+.+.+..+ ..++.++|.+.||+|||...---+++.....+ ..-++++--|.|--|.-+++.+. +.+...|-
T Consensus 175 ~~~r~~Il~~i----~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 175 YKMRDTILDAI----EENQVVVISGETGCGKTTQVPQFILDEAIESG-AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HHHHHHHHHHH----HhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 44444444433 45788999999999999986666777665554 33344555599877777777664 33444455
Q ss_pred EEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHH
Q 010196 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLL 210 (515)
Q Consensus 131 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~ 210 (515)
.|+.-.+..+.. .....+.+||.|.|++.+... ..+..+..||+||+|.=
T Consensus 250 ~VGYqvrl~~~~---------------------------s~~t~L~fcTtGvLLr~L~~~--~~l~~vthiivDEVHER- 299 (924)
T KOG0920|consen 250 EVGYQVRLESKR---------------------------SRETRLLFCTTGVLLRRLQSD--PTLSGVTHIIVDEVHER- 299 (924)
T ss_pred eeeEEEeeeccc---------------------------CCceeEEEecHHHHHHHhccC--cccccCceeeeeeEEEc-
Confidence 555444332211 122589999999999999873 34678999999999951
Q ss_pred HHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCC
Q 010196 211 REAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH 290 (515)
Q Consensus 211 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~ 290 (515)
+--.+.+-.+++.+... .|.+++++||||+. ...+...+...
T Consensus 300 -~i~~DflLi~lk~lL~~-----------------------------------~p~LkvILMSAT~d--ae~fs~YF~~~ 341 (924)
T KOG0920|consen 300 -SINTDFLLILLKDLLPR-----------------------------------NPDLKVILMSATLD--AELFSDYFGGC 341 (924)
T ss_pred -cCCcccHHHHHHHHhhh-----------------------------------CCCceEEEeeeecc--hHHHHHHhCCC
Confidence 11112222222222211 15568999999985 44444444444
Q ss_pred CeeEeeCCccccC---------------Cccccee------------EEeccCCCcHHHHHHHHHh----cCCCeEEEEc
Q 010196 291 PLFLTTGETRYKL---------------PERLESY------------KLICESKLKPLYLVALLQS----LGEEKCIVFT 339 (515)
Q Consensus 291 ~~~~~~~~~~~~~---------------~~~~~~~------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~ 339 (515)
|++...+.. +++ .....++ ......+.....+..++.. ...+.+|||.
T Consensus 342 pvi~i~grt-fpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFL 420 (924)
T KOG0920|consen 342 PVITIPGRT-FPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFL 420 (924)
T ss_pred ceEeecCCC-cchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEc
Confidence 444333211 000 0000000 0000111233444444443 2467899999
Q ss_pred CChhhHHHHHHHHhhcCC----CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC---
Q 010196 340 SSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK--- 412 (515)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~----~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~--- 412 (515)
+....+..+.+.|..... ..+.+..+|+.|+..+...+.+..-.|..+|+++|++++.+|-|+++-.||..+.
T Consensus 421 PG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke 500 (924)
T KOG0920|consen 421 PGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKE 500 (924)
T ss_pred CCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeee
Confidence 999999999999965321 3467889999999999999999999999999999999999999999999998543
Q ss_pred -----CC----------ChhhhHHhhhhcccCCCCccEEEEeechhHHH
Q 010196 413 -----PA----------YIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (515)
Q Consensus 413 -----p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 446 (515)
-. |-..-.||.|||||. ..|.||-+++....+.
T Consensus 501 ~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv-~~G~cy~L~~~~~~~~ 548 (924)
T KOG0920|consen 501 KSYDPERKVSCLLLSWVSKANAKQRRGRAGRV-RPGICYHLYTRSRYEK 548 (924)
T ss_pred eeecccCCcchhheeeccccchHHhcccccCc-cCCeeEEeechhhhhh
Confidence 22 233456999999998 6899999998776543
No 131
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.82 E-value=4.4e-19 Score=181.79 Aligned_cols=364 Identities=18% Similarity=0.152 Sum_probs=218.6
Q ss_pred CcchhhHHHHHHHhCCCCC--CCCEEEECCCCchhHHHhHHHHHHHhhhcc-----cCcccEEEEcccHHHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLF--ERDLCINSPTGSGKTLSYALPIVQTLSNRA-----VRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~--~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-----~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
.+|.||++.+.++- ++. +-+.|++..+|.|||+..+..+..-..... ......||+||. .|+..|..++.
T Consensus 975 ~LRkYQqEGVnWLa--FLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~ 1051 (1549)
T KOG0392|consen 975 KLRKYQQEGVNWLA--FLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVK 1051 (1549)
T ss_pred HHHHHHHhccHHHH--HHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHH
Confidence 48999999977642 121 467899999999999986654443333321 122348999997 89999999999
Q ss_pred HhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEE
Q 010196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (515)
++++. ++|...+|........+. --++.+|+|++++.+-+-... +.-.++.++|
T Consensus 1052 kf~pf--L~v~~yvg~p~~r~~lR~---------------------q~~~~~iiVtSYDv~RnD~d~---l~~~~wNYcV 1105 (1549)
T KOG0392|consen 1052 KFFPF--LKVLQYVGPPAERRELRD---------------------QYKNANIIVTSYDVVRNDVDY---LIKIDWNYCV 1105 (1549)
T ss_pred Hhcch--hhhhhhcCChHHHHHHHh---------------------hccccceEEeeHHHHHHHHHH---HHhcccceEE
Confidence 99997 666666666543333221 113469999999998654432 1123577999
Q ss_pred EcchhHHHHHHH--HhHHHHHH---hhcccCcccc------cCCccccccccccch------------------------
Q 010196 203 VDETDRLLREAY--QAWLPTVL---QLTRSDNENR------FSDASTFLPSAFGSL------------------------ 247 (515)
Q Consensus 203 iDEah~l~~~~~--~~~~~~i~---~~~~~~~~~~------~~~~~~~~~~~~~~~------------------------ 247 (515)
+||.|-+-+... ...+.++. +++.+..+-. ++-+...+|.+++.=
T Consensus 1106 LDEGHVikN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~ 1185 (1549)
T KOG0392|consen 1106 LDEGHVIKNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQ 1185 (1549)
T ss_pred ecCcceecchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHH
Confidence 999997643321 11122211 1111111110 111112223322220
Q ss_pred ---------------hhhhccccccCCCCCCCCceeeEEE---------------------EEEe-----cCCc------
Q 010196 248 ---------------KTIRRCGVERGFKDKPYPRLVKMVL---------------------SATL-----TQDP------ 280 (515)
Q Consensus 248 ---------------~~~~~~~~~~~~~~~~~~~~~~i~~---------------------SaT~-----~~~~------ 280 (515)
..+.+...+.-+++.|.+-+|-+-+ |.+. +...
T Consensus 1186 EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvF 1265 (1549)
T KOG0392|consen 1186 EAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVF 1265 (1549)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHH
Confidence 0001111111111112111111111 1111 0000
Q ss_pred --hhhhhcccCCCeeEeeCCccccCCcccceeE---E---eccCCCcHHHHHHHHHhc----------------CCCeEE
Q 010196 281 --NKLAQLDLHHPLFLTTGETRYKLPERLESYK---L---ICESKLKPLYLVALLQSL----------------GEEKCI 336 (515)
Q Consensus 281 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~~k~~~l~~~l~~~----------------~~~~~l 336 (515)
....+...++|..+... ....+.....+.. . ......|...|..++... .+.++|
T Consensus 1266 qaLqYlrKLcnHpaLvlt~-~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiL 1344 (1549)
T KOG0392|consen 1266 QALQYLRKLCNHPALVLTP-VHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRIL 1344 (1549)
T ss_pred HHHHHHHHhcCCcceeeCC-CcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeE
Confidence 01111223344333321 1111111111111 0 123455777777777533 235899
Q ss_pred EEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC-CceEE-EecCCccccCCCCCCCEEEEccCCC
Q 010196 337 VFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQVL-VSSDAMTRGMDVEGVNNVVNYDKPA 414 (515)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g-~~~vL-v~T~~~~~GiDi~~v~~VI~~~~p~ 414 (515)
|||.-+...+.+.+-|-+.....+....+.|+.++.+|.++.++|+++ .++|| ++|.+.+.|+|+.+++.||.++-.|
T Consensus 1345 IFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDW 1424 (1549)
T KOG0392|consen 1345 IFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDW 1424 (1549)
T ss_pred EeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCC
Confidence 999999999999998866555557778999999999999999999999 67775 7889999999999999999999999
Q ss_pred ChhhhHHhhhhcccCCCC--ccEEEEeechh
Q 010196 415 YIKTYIHRAGRTARAGQL--GRCFTLLHKDE 443 (515)
Q Consensus 415 s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d 443 (515)
++-.-.|++-||+|.|++ -.++-++....
T Consensus 1425 NPMrDLQAMDRAHRIGQKrvVNVyRlItrGT 1455 (1549)
T KOG0392|consen 1425 NPMRDLQAMDRAHRIGQKRVVNVYRLITRGT 1455 (1549)
T ss_pred CchhhHHHHHHHHhhcCceeeeeeeehhccc
Confidence 999999999999999998 45666777654
No 132
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.81 E-value=2.4e-18 Score=161.12 Aligned_cols=327 Identities=15% Similarity=0.124 Sum_probs=207.5
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..+-|+|.+.+...++ +|..+++...+|.|||+.++..+-.+..+. ..||+||. +|-..|.+.+.+|++..
T Consensus 197 s~LlPFQreGv~faL~---RgGR~llADeMGLGKTiQAlaIA~yyraEw-----plliVcPA-svrftWa~al~r~lps~ 267 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALE---RGGRILLADEMGLGKTIQALAIARYYRAEW-----PLLIVCPA-SVRFTWAKALNRFLPSI 267 (689)
T ss_pred HhhCchhhhhHHHHHh---cCCeEEEecccccchHHHHHHHHHHHhhcC-----cEEEEecH-HHhHHHHHHHHHhcccc
Confidence 4588999999877654 688999999999999998775444333332 48999998 66678999999998875
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
.. +.++.++.+... .+.....|.|.+++.+..+-.. +.-..+.+||+||+|.
T Consensus 268 ~p-i~vv~~~~D~~~------------------------~~~t~~~v~ivSye~ls~l~~~---l~~~~~~vvI~DEsH~ 319 (689)
T KOG1000|consen 268 HP-IFVVDKSSDPLP------------------------DVCTSNTVAIVSYEQLSLLHDI---LKKEKYRVVIFDESHM 319 (689)
T ss_pred cc-eEEEecccCCcc------------------------ccccCCeEEEEEHHHHHHHHHH---HhcccceEEEEechhh
Confidence 33 555555543211 1223357999999887654332 2234588999999997
Q ss_pred HHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecC----------
Q 010196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ---------- 278 (515)
Q Consensus 209 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~---------- 278 (515)
+-+ +-......++..+.... +++++|+|+.-
T Consensus 320 Lk~-sktkr~Ka~~dllk~ak--------------------------------------hvILLSGTPavSRP~elytqi 360 (689)
T KOG1000|consen 320 LKD-SKTKRTKAATDLLKVAK--------------------------------------HVILLSGTPAVSRPSELYTQI 360 (689)
T ss_pred hhc-cchhhhhhhhhHHHHhh--------------------------------------heEEecCCcccCCchhhhhhh
Confidence 643 33333444433322111 45666666531
Q ss_pred ---------CchhhhhcccCC---CeeEeeCC-----------------------ccccCCcccceeEEecc--------
Q 010196 279 ---------DPNKLAQLDLHH---PLFLTTGE-----------------------TRYKLPERLESYKLICE-------- 315 (515)
Q Consensus 279 ---------~~~~~~~~~~~~---~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~-------- 315 (515)
+..++...+... +..+.... .-..+|..-+...+.+.
T Consensus 361 ~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPpKrr~Vv~~~~gr~da~~~ 440 (689)
T KOG1000|consen 361 RAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPPKRREVVYVSGGRIDARMD 440 (689)
T ss_pred hhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCccceEEEEEcCCccchHHH
Confidence 111111111100 00000000 00001111000000000
Q ss_pred -----------------------------CCCcHHHHHHHHHh------cCCCeEEEEcCChhhHHHHHHHHhhcCCCce
Q 010196 316 -----------------------------SKLKPLYLVALLQS------LGEEKCIVFTSSVESTHRLCTLLNHFGELRI 360 (515)
Q Consensus 316 -----------------------------~~~k~~~l~~~l~~------~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~ 360 (515)
...|...+.+.+-. .++.|.+||+.+....+.+...+.+.+ +
T Consensus 441 ~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~---v 517 (689)
T KOG1000|consen 441 DLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRK---V 517 (689)
T ss_pred HHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhHHHHHHHHHHHHHcC---C
Confidence 11122233333322 245699999999999999999998776 8
Q ss_pred eEEEccCccCHHHHHHHHHHHhcC-CceE-EEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE--E
Q 010196 361 KIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--F 436 (515)
Q Consensus 361 ~v~~~~~~~~~~~r~~~l~~f~~g-~~~v-Lv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~ 436 (515)
....+.|..+..+|....+.|..+ ++.| +++..+++.|+++...+.|+...+++++.-++|.=-|++|.|+...+ +
T Consensus 518 g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~wnPgvLlQAEDRaHRiGQkssV~v~ 597 (689)
T KOG1000|consen 518 GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHWNPGVLLQAEDRAHRIGQKSSVFVQ 597 (689)
T ss_pred CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecCCCceEEechhhhhhccccceeeEE
Confidence 889999999999999999999965 4555 67778899999999999999999999999999999999999998544 3
Q ss_pred EEeech--hHHHHHHHHHHh
Q 010196 437 TLLHKD--EVKRFKKLLQKA 454 (515)
Q Consensus 437 ~~~~~~--d~~~~~~~~~~~ 454 (515)
.++.+. |...+..+.+++
T Consensus 598 ylvAKgT~Ddy~Wp~l~~KL 617 (689)
T KOG1000|consen 598 YLVAKGTADDYMWPMLQQKL 617 (689)
T ss_pred EEEecCchHHHHHHHHHHHH
Confidence 444444 333444554443
No 133
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.80 E-value=2.8e-17 Score=171.89 Aligned_cols=90 Identities=23% Similarity=0.174 Sum_probs=67.5
Q ss_pred CCCCcchhhHHHHHHHhCCCCC-----CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH-H
Q 010196 47 GISSLFPVQVAVWQETIGPGLF-----ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD-V 120 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~-----~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~-~ 120 (515)
|| ++|+-|.+.+..+...+.. ++.+++.||||+|||++|++|++...... +.+++|-+.|..|-+|+.. .
T Consensus 23 ~~-e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~---~k~vVIST~T~~LQeQL~~kD 98 (697)
T PRK11747 23 GF-IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAE---KKKLVISTATVALQEQLVSKD 98 (697)
T ss_pred CC-CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHc---CCeEEEEcCCHHHHHHHHhhh
Confidence 56 7999999998888777665 47799999999999999999998776642 3379999999999999964 3
Q ss_pred HHHhcccc--CcEEEEeecCCc
Q 010196 121 FAAIAPAV--GLSVGLAVGQSS 140 (515)
Q Consensus 121 ~~~~~~~~--~~~v~~~~g~~~ 140 (515)
+-.+...+ .+++.++-|..+
T Consensus 99 lP~l~~~l~~~~~~~llKGr~n 120 (697)
T PRK11747 99 LPLLLKISGLDFKFTLAKGRGR 120 (697)
T ss_pred hhHHHHHcCCCceEEEEcCccc
Confidence 33222222 466666655544
No 134
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.5e-17 Score=167.91 Aligned_cols=131 Identities=27% Similarity=0.305 Sum_probs=100.3
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|+++|.-. .+.....-|..+.||-|||+++.+|+.-....+ ..+.|++++..||..-++++..+.
T Consensus 82 lG~-r~ydVQliG------gl~Lh~G~IAEM~TGEGKTL~atlpaylnAL~G----kgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 82 LGM-RHFDVQLIG------GMVLHEGQIAEMKTGEGKTLVATLPSYLNALTG----KGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred hCC-CcchhHHHh------hhhhcCCceeeecCCCChhHHHHHHHHHHhhcC----CCeEEEeCCHHHHHhHHHHHHHHH
Confidence 565 688888543 333466779999999999999999988665554 379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-----HHHHhc-CcCCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-----MDHINA-TRGFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-----~~~l~~-~~~~~~~~~~ 199 (515)
..+|++|+++.++.+..+.... -.+||+++|+..| .+.+.. ........+.
T Consensus 151 ~~LGLtvg~i~~~~~~~err~a-----------------------Y~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~ 207 (939)
T PRK12902 151 RFLGLSVGLIQQDMSPEERKKN-----------------------YACDITYATNSELGFDYLRDNMATDISEVVQRPFN 207 (939)
T ss_pred HHhCCeEEEECCCCChHHHHHh-----------------------cCCCeEEecCCcccccchhhhhcccccccccCccc
Confidence 9999999999887765544322 3569999999877 333322 1112356789
Q ss_pred EEEEcchhHHH
Q 010196 200 YLVVDETDRLL 210 (515)
Q Consensus 200 ~vViDEah~l~ 210 (515)
+.||||+|.++
T Consensus 208 faIVDEvDSIL 218 (939)
T PRK12902 208 YCVIDEVDSIL 218 (939)
T ss_pred eEEEeccccee
Confidence 99999999864
No 135
>COG4889 Predicted helicase [General function prediction only]
Probab=99.80 E-value=3.2e-19 Score=177.05 Aligned_cols=367 Identities=16% Similarity=0.199 Sum_probs=195.8
Q ss_pred HHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 38 RLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 38 ~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
++..++.-..-.+|||+|+.|+...+..+..+...=+.+.+|+|||++.+- +.+.+.. .++|+++|+.+|..|.
T Consensus 149 e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLk-isEala~-----~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 149 ELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLK-ISEALAA-----ARILFLVPSISLLSQT 222 (1518)
T ss_pred ccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHH-HHHHHhh-----hheEeecchHHHHHHH
Confidence 344444444556899999999999988877666666778899999999765 4444433 4899999999999888
Q ss_pred HHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHh-----hccCCcEEEeCChHHHHHHhcCcC
Q 010196 118 KDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQE-----LQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 118 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
.+++..-. .+.++...++++......... .+-......+..+.+.+... -..+--||++|++.+...-.. ..
T Consensus 223 lrew~~~~-~l~~~a~aVcSD~kvsrs~eD-ik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eA-Qe 299 (1518)
T COG4889 223 LREWTAQK-ELDFRASAVCSDDKVSRSAED-IKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEA-QE 299 (1518)
T ss_pred HHHHhhcc-CccceeEEEecCccccccccc-cccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHH-HH
Confidence 77665432 235666666666544332111 11122233333444444322 123456999999998665433 22
Q ss_pred CCCCcceEEEEcchhHHHHHHHH-------------hHHHHHHhhcccCcccccCCccccccc----cccchhhhhcccc
Q 010196 193 FTLEHLCYLVVDETDRLLREAYQ-------------AWLPTVLQLTRSDNENRFSDASTFLPS----AFGSLKTIRRCGV 255 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~~~-------------~~~~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 255 (515)
.-+..+++||+||||+--..... ..+...-++.....+..++++...... .+.++..-...
T Consensus 300 ~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~f-- 377 (1518)
T COG4889 300 AGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTF-- 377 (1518)
T ss_pred cCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhh--
Confidence 34678999999999984211100 011111111111111111110000000 00000000000
Q ss_pred ccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHH------Hh
Q 010196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALL------QS 329 (515)
Q Consensus 256 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l------~~ 329 (515)
-+.+..+.|+..+ ..-.+.+..++........+...+.......+..-..+....++ .+
T Consensus 378 --------Geef~rl~FgeAv-------~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlak 442 (1518)
T COG4889 378 --------GEEFHRLGFGEAV-------ERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAK 442 (1518)
T ss_pred --------chhhhcccHHHHH-------HhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhh
Confidence 0000000000000 00011111111111111111111111111111111111111111 11
Q ss_pred c---------------CCCeEEEEcCChhhHHHHHHHHhh------------cCCCceeEEEccCccCHHHHHHHHHH--
Q 010196 330 L---------------GEEKCIVFTSSVESTHRLCTLLNH------------FGELRIKIKEYSGLQRQSVRSKTLKA-- 380 (515)
Q Consensus 330 ~---------------~~~~~lVf~~s~~~~~~l~~~L~~------------~~~~~~~v~~~~~~~~~~~r~~~l~~-- 380 (515)
. +-.++|-||.+.++.+.+++.+.. ...+.+.+....|.|...+|...+..
T Consensus 443 r~g~~n~~~~~~~d~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~ 522 (1518)
T COG4889 443 RNGEDNDLKNIKADTAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKN 522 (1518)
T ss_pred hccccccccCCcCCchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccC
Confidence 1 113678899998888877766532 12344566677788999888655543
Q ss_pred -HhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCC
Q 010196 381 -FREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (515)
Q Consensus 381 -f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (515)
|...+++||--...+++|+|+|.++-||.+++-.+..+.+|.+||+.|..
T Consensus 523 ~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~smVDIVQaVGRVMRKa 573 (1518)
T COG4889 523 TFEPNECKILSNARCLSEGVDVPALDSVIFFDPRSSMVDIVQAVGRVMRKA 573 (1518)
T ss_pred CCCcchheeeccchhhhcCCCccccceEEEecCchhHHHHHHHHHHHHHhC
Confidence 34568999999999999999999999999999999999999999999964
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.80 E-value=4.7e-18 Score=164.77 Aligned_cols=306 Identities=20% Similarity=0.282 Sum_probs=190.4
Q ss_pred chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc-ccHHHHHHHHHHHHH-hccccC
Q 010196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAA-IAPAVG 129 (515)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~-Pt~~L~~q~~~~~~~-~~~~~~ 129 (515)
...+.+.+..+ ..++-++|.+.||||||.. +-++|+..+.....+|-++ |.|.-|.-+++.... +...+|
T Consensus 358 f~~R~~ll~~i----r~n~vvvivgETGSGKTTQ----l~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG 429 (1042)
T KOG0924|consen 358 FACRDQLLSVI----RENQVVVIVGETGSGKTTQ----LAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLG 429 (1042)
T ss_pred HHHHHHHHHHH----hhCcEEEEEecCCCCchhh----hHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccc
Confidence 34444444433 3366688999999999987 3344444333322344444 888888777776653 333334
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
..|+...- .+.. ..+...|-++|-|.|+.-.... -.+.+.++||+||||.=
T Consensus 430 ~~VGYsIR----FEdv-----------------------T~~~T~IkymTDGiLLrEsL~d--~~L~kYSviImDEAHER 480 (1042)
T KOG0924|consen 430 DTVGYSIR----FEDV-----------------------TSEDTKIKYMTDGILLRESLKD--RDLDKYSVIIMDEAHER 480 (1042)
T ss_pred cccceEEE----eeec-----------------------CCCceeEEEeccchHHHHHhhh--hhhhheeEEEechhhhc
Confidence 33333221 1110 1123468899999998755443 24678999999999962
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccC
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (515)
. -..+.+..+++...... ..+..++.|||+ +...+...+-+
T Consensus 481 s--lNtDilfGllk~~larR-----------------------------------rdlKliVtSATm--~a~kf~nfFgn 521 (1042)
T KOG0924|consen 481 S--LNTDILFGLLKKVLARR-----------------------------------RDLKLIVTSATM--DAQKFSNFFGN 521 (1042)
T ss_pred c--cchHHHHHHHHHHHHhh-----------------------------------ccceEEEeeccc--cHHHHHHHhCC
Confidence 0 11122333333221111 224789999998 45555555544
Q ss_pred CCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHH-------hcCCCeEEEEcCChhhHHHHHHHHhh----cC--
Q 010196 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ-------SLGEEKCIVFTSSVESTHRLCTLLNH----FG-- 356 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~-------~~~~~~~lVf~~s~~~~~~l~~~L~~----~~-- 356 (515)
.|.....+. .++ ++..+ ......+++...+. ....+.+|||....+..+..+..+++ ..
T Consensus 522 ~p~f~IpGR-TyP----V~~~~---~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~ 593 (1042)
T KOG0924|consen 522 CPQFTIPGR-TYP----VEIMY---TKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSA 593 (1042)
T ss_pred CceeeecCC-ccc----eEEEe---ccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcC
Confidence 454433322 111 11111 12222233333322 22457899999887776665555433 21
Q ss_pred -CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC------------------CCChh
Q 010196 357 -ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK------------------PAYIK 417 (515)
Q Consensus 357 -~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~------------------p~s~~ 417 (515)
..+..+..+.+.++..-..++++.-..|..+++|||++++..+-+|++.+||..++ |.|-.
T Consensus 594 ~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~A 673 (1042)
T KOG0924|consen 594 PTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQA 673 (1042)
T ss_pred CCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEechhc
Confidence 13578999999999988888888777888999999999999999999999998553 55666
Q ss_pred hhHHhhhhcccCCCCccEEEEeech
Q 010196 418 TYIHRAGRTARAGQLGRCFTLLHKD 442 (515)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (515)
.--||.|||||.| +|.|+-++++.
T Consensus 674 nA~QRaGRAGRt~-pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 674 NADQRAGRAGRTG-PGTCYRLYTED 697 (1042)
T ss_pred cchhhccccCCCC-Ccceeeehhhh
Confidence 7789999999997 99999999874
No 137
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=2.3e-18 Score=169.68 Aligned_cols=317 Identities=18% Similarity=0.222 Sum_probs=187.9
Q ss_pred HhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-----CcccEEEE-cccHHHHHHHHHHHHHhccccCcEEEEe
Q 010196 62 TIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-----RCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLA 135 (515)
Q Consensus 62 ~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-----~~~~~lil-~Pt~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (515)
|++++..+.-+||++.||||||.. +| +.|+..+. ..+.+|=+ -|.|--|.-+++....-+..++-.|+..
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQ--vP--QFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQ--VP--QFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCcccc--ch--HHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 344444566699999999999986 33 33443221 12334444 4877665555554432222233333222
Q ss_pred --ecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHH
Q 010196 136 --VGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREA 213 (515)
Q Consensus 136 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~ 213 (515)
+.++ ..+...|-++|-|.|+.-+.+. |.+...+.||+||||.= .-
T Consensus 340 IRfd~t-----------------------------i~e~T~IkFMTDGVLLrEi~~D--flL~kYSvIIlDEAHER--Sv 386 (1172)
T KOG0926|consen 340 IRFDGT-----------------------------IGEDTSIKFMTDGVLLREIEND--FLLTKYSVIILDEAHER--SV 386 (1172)
T ss_pred EEeccc-----------------------------cCCCceeEEecchHHHHHHHHh--HhhhhceeEEechhhhc--cc
Confidence 2221 2345689999999999988763 66889999999999961 11
Q ss_pred HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecC-CchhhhhcccCCCe
Q 010196 214 YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQ-DPNKLAQLDLHHPL 292 (515)
Q Consensus 214 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~-~~~~~~~~~~~~~~ 292 (515)
+.+.+-.++..+-.... .+ .. -+.....+..|+||||+.- +..+--.++-..|-
T Consensus 387 nTDILiGmLSRiV~LR~-----------k~-----------~k---e~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pP 441 (1172)
T KOG0926|consen 387 NTDILIGMLSRIVPLRQ-----------KY-----------YK---EQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPP 441 (1172)
T ss_pred hHHHHHHHHHHHHHHHH-----------HH-----------hh---hhcccCceeEEEEeeeEEecccccCceecCCCCc
Confidence 11222222222111000 00 00 0011234578999999842 12212222322333
Q ss_pred eEeeCCccccCCcccceeEEecc--CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCC-------------
Q 010196 293 FLTTGETRYKLPERLESYKLICE--SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGE------------- 357 (515)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~--~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~------------- 357 (515)
++......+ |..++.-.-... -.+.+...+.+.+..+.+.+|||+....++..+++.|+...+
T Consensus 442 likVdARQf--PVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k 519 (1172)
T KOG0926|consen 442 LIKVDARQF--PVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVK 519 (1172)
T ss_pred eeeeecccC--ceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhh
Confidence 444433322 222221111110 012233455566677899999999999999999999976311
Q ss_pred --------------------------------------------------------------------------------
Q 010196 358 -------------------------------------------------------------------------------- 357 (515)
Q Consensus 358 -------------------------------------------------------------------------------- 357 (515)
T Consensus 520 ~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~ 599 (1172)
T KOG0926|consen 520 AFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGK 599 (1172)
T ss_pred hccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCC
Confidence
Q ss_pred ---CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC--------C----------Ch
Q 010196 358 ---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP--------A----------YI 416 (515)
Q Consensus 358 ---~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p--------~----------s~ 416 (515)
...-|..+++-++.+....+++.--.|..-++|+|++++..+-||++..||..+.- . |-
T Consensus 600 ~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSk 679 (1172)
T KOG0926|consen 600 FSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISK 679 (1172)
T ss_pred CCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeec
Confidence 00135566666777777777777777888889999999999999999999985532 2 22
Q ss_pred hhhHHhhhhcccCCCCccEEEEeechh
Q 010196 417 KTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 417 ~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
.+--||+|||||.| .|.||-+++..-
T Consensus 680 ASadQRAGRAGRtg-pGHcYRLYSSAV 705 (1172)
T KOG0926|consen 680 ASADQRAGRAGRTG-PGHCYRLYSSAV 705 (1172)
T ss_pred cccchhccccCCCC-CCceeehhhhHH
Confidence 34459999999997 899999988653
No 138
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.79 E-value=1.4e-17 Score=175.88 Aligned_cols=78 Identities=23% Similarity=0.220 Sum_probs=66.5
Q ss_pred HhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 44 QNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 44 ~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
..+...++|+.|.+++..+...+..++.++++||||+|||++|++|++......+ .+++|.++|+.|.+|+.++...
T Consensus 9 ~~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~---~~viist~t~~lq~q~~~~~~~ 85 (654)
T COG1199 9 VAFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG---KKVIISTRTKALQEQLLEEDLP 85 (654)
T ss_pred hhCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC---CcEEEECCCHHHHHHHHHhhcc
Confidence 3455568999999999888877777788999999999999999999998876643 4799999999999999887766
Q ss_pred h
Q 010196 124 I 124 (515)
Q Consensus 124 ~ 124 (515)
+
T Consensus 86 ~ 86 (654)
T COG1199 86 I 86 (654)
T ss_pred h
Confidence 4
No 139
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.78 E-value=1.1e-17 Score=150.01 Aligned_cols=187 Identities=34% Similarity=0.543 Sum_probs=136.9
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~-~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
.+++.+|+++|.+++..+.. . +++++.+|||+|||.+++.++++.+.... ..+++|++|+.+++.|+.+.+..
T Consensus 3 ~~~~~~~~~~Q~~~~~~~~~----~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~--~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 3 KFGFEPLRPYQKEAIEALLS----GLRDVILAAPTGSGKTLAALLPALEALKRGK--GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCcEEEECCCCCchhHHHHHHHHHHhcccC--CCcEEEEeCCHHHHHHHHHHHHH
Confidence 45678899999999988765 4 89999999999999999999998887642 34799999999999999999998
Q ss_pred hccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCC-cEEEeCChHHHHHHhcCcCCCCCcceEEE
Q 010196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV-DILVATPGRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (515)
++...........++........ .+..+. +|+++|++.+.+.+.... .....++++|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~v~~~t~~~l~~~~~~~~-~~~~~~~~iI 134 (201)
T smart00487 77 LGPSLGLKVVGLYGGDSKREQLR---------------------KLESGKTDILVTTPGRLLDLLENDL-LELSNVDLVI 134 (201)
T ss_pred HhccCCeEEEEEeCCcchHHHHH---------------------HHhcCCCCEEEeChHHHHHHHHcCC-cCHhHCCEEE
Confidence 87654423333444433222221 223343 999999999999887743 4567789999
Q ss_pred EcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchh
Q 010196 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (515)
Q Consensus 203 iDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (515)
+||+|.+....+...+..++.... +..+.+++|||++.....
T Consensus 135 iDE~h~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~v~~saT~~~~~~~ 176 (201)
T smart00487 135 LDEAHRLLDGGFGDQLEKLLKLLP--------------------------------------KNVQLLLLSATPPEEIEN 176 (201)
T ss_pred EECHHHHhcCCcHHHHHHHHHhCC--------------------------------------ccceEEEEecCCchhHHH
Confidence 999999865455555666665441 123679999999887777
Q ss_pred hhhcccCCCeeEeeC
Q 010196 283 LAQLDLHHPLFLTTG 297 (515)
Q Consensus 283 ~~~~~~~~~~~~~~~ 297 (515)
...........+...
T Consensus 177 ~~~~~~~~~~~~~~~ 191 (201)
T smart00487 177 LLELFLNDPVFIDVG 191 (201)
T ss_pred HHHHhcCCCEEEeCC
Confidence 766666655555443
No 140
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.78 E-value=2.5e-18 Score=142.97 Aligned_cols=118 Identities=39% Similarity=0.580 Sum_probs=108.4
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc
Q 010196 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (515)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~ 395 (515)
.|...+..++... .++++||||++...++.+++.|.... ..+..+||+++..+|..+++.|+++...+|++|.++
T Consensus 12 ~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 12 EKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPG---IKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 6777788877765 37899999999999999999998743 789999999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEE
Q 010196 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (515)
Q Consensus 396 ~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 438 (515)
++|+|+|++++||+++.|++...|.|++||++|.|+.|.++++
T Consensus 89 ~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEEeCCCCCHHHheecccccccCCCCceEEeC
Confidence 9999999999999999999999999999999999998887764
No 141
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.78 E-value=3.8e-18 Score=162.14 Aligned_cols=278 Identities=22% Similarity=0.267 Sum_probs=182.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHh
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (515)
+-++-++||.||||.- +++++.+.+ ..+|.-|.+-||.++++.+... |+.+.+++|..-.....
T Consensus 192 kIi~H~GPTNSGKTy~----ALqrl~~ak----sGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~---- 255 (700)
T KOG0953|consen 192 KIIMHVGPTNSGKTYR----ALQRLKSAK----SGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLD---- 255 (700)
T ss_pred eEEEEeCCCCCchhHH----HHHHHhhhc----cceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCC----
Confidence 3455699999999986 677776643 6799999999999999999887 67777888765322110
Q ss_pred ccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHH-hHHHHHHhhcccC
Q 010196 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ-AWLPTVLQLTRSD 228 (515)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~-~~~~~i~~~~~~~ 228 (515)
-...+..+-||.++.- . -..+++.|+||++.|.+...+ .|...++......
T Consensus 256 -------------------~~~~a~hvScTVEM~s--------v-~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE 307 (700)
T KOG0953|consen 256 -------------------NGNPAQHVSCTVEMVS--------V-NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE 307 (700)
T ss_pred -------------------CCCcccceEEEEEEee--------c-CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhh
Confidence 0123577788866641 1 235789999999998776654 4555555443211
Q ss_pred cccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhccc---CCCeeEeeCCccccCCc
Q 010196 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL---HHPLFLTTGETRYKLPE 305 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 305 (515)
- . +.+-+ .+..+.+..+ .+.+.+.. .+
T Consensus 308 i--------------------------------------H---LCGep--svldlV~~i~k~TGd~vev~~-------Ye 337 (700)
T KOG0953|consen 308 I--------------------------------------H---LCGEP--SVLDLVRKILKMTGDDVEVRE-------YE 337 (700)
T ss_pred h--------------------------------------h---ccCCc--hHHHHHHHHHhhcCCeeEEEe-------ec
Confidence 0 0 00000 0111111100 01111111 01
Q ss_pred ccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhc--
Q 010196 306 RLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE-- 383 (515)
Q Consensus 306 ~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~-- 383 (515)
++.... -.+.+..-+.....+-|+|-+ |++....+...+.+.+. .+++++.|++|++.|.+....|++
T Consensus 338 Rl~pL~-------v~~~~~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~g~--~k~aVIYGsLPPeTr~aQA~~FNd~~ 407 (700)
T KOG0953|consen 338 RLSPLV-------VEETALGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKAGN--HKCAVIYGSLPPETRLAQAALFNDPS 407 (700)
T ss_pred ccCcce-------ehhhhhhhhccCCCCCeEEEe-ehhhHHHHHHHHHHhcC--cceEEEecCCCCchhHHHHHHhCCCC
Confidence 111111 111234444555566666643 67888889999988763 558889999999999999999997
Q ss_pred CCceEEEecCCccccCCCCCCCEEEEccCC---------CChhhhHHhhhhcccCCCC---ccEEEEeechhHHHHHHHH
Q 010196 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKP---------AYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRFKKLL 451 (515)
Q Consensus 384 g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p---------~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~d~~~~~~~~ 451 (515)
++++||||||+.++|+|+. ++.||.+++- .+..+-.|..|||||.|.. |.+.++ ..+|...+++++
T Consensus 408 ~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl-~~eDL~~L~~~l 485 (700)
T KOG0953|consen 408 NECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTL-HSEDLKLLKRIL 485 (700)
T ss_pred CccceEEeecccccccccc-eeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEe-eHhhHHHHHHHH
Confidence 8999999999999999995 8999988753 3466788999999999765 666555 566777777776
Q ss_pred HH
Q 010196 452 QK 453 (515)
Q Consensus 452 ~~ 453 (515)
+.
T Consensus 486 ~~ 487 (700)
T KOG0953|consen 486 KR 487 (700)
T ss_pred hC
Confidence 64
No 142
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.75 E-value=3.4e-18 Score=127.58 Aligned_cols=77 Identities=36% Similarity=0.627 Sum_probs=72.9
Q ss_pred HHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCC
Q 010196 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (515)
Q Consensus 351 ~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (515)
.|+..+ +.+..+||++++.+|..+++.|++++..|||||+++++|+|+|++++||++++|+++..|.|++||++|.|
T Consensus 2 ~L~~~~---~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 2 FLEKKG---IKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp HHHHTT---SSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred ChHHCC---CcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 455544 89999999999999999999999999999999999999999999999999999999999999999999986
No 143
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.74 E-value=1.2e-16 Score=168.65 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=70.0
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
|-|..+||.|.+.+..+...+..+.++++.+|||+|||++.+.|++.+....+ ...+++|++.|.+-..|+.+++++..
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-~~~kIiy~sRThsQl~q~i~Elk~~~ 84 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-EVRKIIYASRTHSQLEQATEELRKLM 84 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-ccccEEEEcccchHHHHHHHHHHhhh
Confidence 56777799999999999999999999999999999999999999999876532 33589999999999999999999853
No 144
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.5e-17 Score=158.17 Aligned_cols=337 Identities=13% Similarity=0.076 Sum_probs=209.5
Q ss_pred HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
.+..+.-+....+|.+++..+ -.|+++++...|.+||++++.+.....+... .....+++.|+.+++....+.+
T Consensus 278 ~~~~~~~E~~~~~~~~~~~~~----~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~ 351 (1034)
T KOG4150|consen 278 LLNKNTGESGIAISLELLKFA----SEGRADGGNEARQAGKGTCPTSGSRKFQTLC--HATNSLLPSEMVEHLRNGSKGQ 351 (1034)
T ss_pred HHhcccccchhhhhHHHHhhh----hhcccccccchhhcCCccCcccchhhhhhcC--cccceecchhHHHHhhccCCce
Confidence 334455567899999996554 4699999999999999999998888766653 3446899999999987654433
Q ss_pred HHhcccc----CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC---
Q 010196 122 AAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT--- 194 (515)
Q Consensus 122 ~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~--- 194 (515)
.-..... +--|....|.+...+. ...+.+.+++++.|+........ +...
T Consensus 352 ~V~~~~I~~~K~A~V~~~D~~sE~~~~----------------------A~~R~~~~~~~s~~~~~~s~~L~-~~~~~~~ 408 (1034)
T KOG4150|consen 352 VVHVEVIKARKSAYVEMSDKLSETTKS----------------------ALKRIGLNTLYSHQAEAISAALA-KSLCYNV 408 (1034)
T ss_pred EEEEEehhhhhcceeecccCCCchhHH----------------------HHHhcCcceeecCHHHHHHHHhh-hcccccc
Confidence 2221111 1112222222222222 23456789999999887655443 1221
Q ss_pred -CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 195 -LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 195 -~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
+-+..++++||+|..+. -++......++.+.....+. ....+++++-.+
T Consensus 409 ~~~~~~~~~~~~~~~Y~~-~~~~~~~~~~R~L~~L~~~F-----------------------------~~~~~~~~~~~~ 458 (1034)
T KOG4150|consen 409 PVFEELCKDTNSCALYLF-PTKALAQDQLRALSDLIKGF-----------------------------EASINMGVYDGD 458 (1034)
T ss_pred HHHHHHHhcccceeeeec-chhhHHHHHHHHHHHHHHHH-----------------------------HhhcCcceEeCC
Confidence 23456899999996422 22222222222221111000 001234677778
Q ss_pred EEecCCchhhhhcc-cCCCeeEeeCCccccCCcccceeEE------ecc---CCCcHHHHHHHHHhc--CCCeEEEEcCC
Q 010196 274 ATLTQDPNKLAQLD-LHHPLFLTTGETRYKLPERLESYKL------ICE---SKLKPLYLVALLQSL--GEEKCIVFTSS 341 (515)
Q Consensus 274 aT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~k~~~l~~~l~~~--~~~~~lVf~~s 341 (515)
+|+...+....... +.....+..+.. |....++.+ ... .+.+......++.+. .+-++|-||++
T Consensus 459 ~~~K~~~~~~~~~~~~~E~~Li~~DGS----Ps~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~~~R~IAFC~~ 534 (1034)
T KOG4150|consen 459 TPYKDRTRLRSELANLSELELVTIDGS----PSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQHGLRCIAFCPS 534 (1034)
T ss_pred CCcCCHHHHHHHhcCCcceEEEEecCC----CCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHcCCcEEEeccH
Confidence 88765544333322 222222222111 111111111 011 112222233333322 46799999999
Q ss_pred hhhHHHHHHHHhhc----C-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCCh
Q 010196 342 VESTHRLCTLLNHF----G-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYI 416 (515)
Q Consensus 342 ~~~~~~l~~~L~~~----~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~ 416 (515)
++.|+.+....++. + .+--.+.-|.|+...++|.++....--|+..-+|+|++++.|||+..++.|++.++|.|.
T Consensus 535 R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GFP~S~ 614 (1034)
T KOG4150|consen 535 RKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGFPGSI 614 (1034)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccCchhH
Confidence 99999887765432 1 111245678899999999999999999999999999999999999999999999999999
Q ss_pred hhhHHhhhhcccCCCCccEEEEeec
Q 010196 417 KTYIHRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 417 ~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
..+.|..|||||.+++..++.++..
T Consensus 615 aNl~QQ~GRAGRRNk~SLavyva~~ 639 (1034)
T KOG4150|consen 615 ANLWQQAGRAGRRNKPSLAVYVAFL 639 (1034)
T ss_pred HHHHHHhccccccCCCceEEEEEec
Confidence 9999999999999988766555543
No 145
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.73 E-value=2.5e-16 Score=147.43 Aligned_cols=329 Identities=21% Similarity=0.284 Sum_probs=196.8
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccC
Q 010196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~ 100 (515)
+++|++.+ .++.--+.+++..--..+..+.+- ++.+..++-+++.+.||||||...--++++......
T Consensus 24 ~Npf~~~p------~s~rY~~ilk~R~~LPvw~~k~~F----~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-- 91 (699)
T KOG0925|consen 24 INPFNGKP------YSQRYYDILKKRRELPVWEQKEEF----LKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-- 91 (699)
T ss_pred cCCCCCCc------CcHHHHHHHHHHhcCchHHhHHHH----HHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc--
Confidence 55666666 566666777664322233434333 333456788999999999999875555666555432
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
..+...-|.|--+.+++....+- .++..+.-+|-.-..+. +.+++.+.. +||-
T Consensus 92 -~~v~CTQprrvaamsva~RVadE---MDv~lG~EVGysIrfEd--------------C~~~~T~Lk---------y~tD 144 (699)
T KOG0925|consen 92 -TGVACTQPRRVAAMSVAQRVADE---MDVTLGEEVGYSIRFED--------------CTSPNTLLK---------YCTD 144 (699)
T ss_pred -cceeecCchHHHHHHHHHHHHHH---hccccchhccccccccc--------------cCChhHHHH---------Hhcc
Confidence 23444458877777766654432 24444444443322221 122222222 4777
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcchhH--HHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDETDR--LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~--l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
++|++-..+.+. ++.+.+||+||||. +..+.....++.+...
T Consensus 145 gmLlrEams~p~--l~~y~viiLDeahERtlATDiLmGllk~v~~~---------------------------------- 188 (699)
T KOG0925|consen 145 GMLLREAMSDPL--LGRYGVIILDEAHERTLATDILMGLLKEVVRN---------------------------------- 188 (699)
T ss_pred hHHHHHHhhCcc--cccccEEEechhhhhhHHHHHHHHHHHHHHhh----------------------------------
Confidence 777766555433 67899999999996 2222222222222221
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHH----HHHHHHhcCCCe
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLY----LVALLQSLGEEK 334 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~----l~~~l~~~~~~~ 334 (515)
.|.++++++|||+ +..++...+.+.|+.-..+ .++ ++.++......+.++. +.++......+-
T Consensus 189 -----rpdLk~vvmSatl--~a~Kfq~yf~n~Pll~vpg--~~P----vEi~Yt~e~erDylEaairtV~qih~~ee~GD 255 (699)
T KOG0925|consen 189 -----RPDLKLVVMSATL--DAEKFQRYFGNAPLLAVPG--THP----VEIFYTPEPERDYLEAAIRTVLQIHMCEEPGD 255 (699)
T ss_pred -----CCCceEEEeeccc--chHHHHHHhCCCCeeecCC--CCc----eEEEecCCCChhHHHHHHHHHHHHHhccCCCC
Confidence 1456889999997 4455555555666554443 111 2223332223333322 333333446788
Q ss_pred EEEEcCChhhHHHHHHHHhhc----C--CCceeEEEccCccCHHHHHHHHHHHhc---C--CceEEEecCCccccCCCCC
Q 010196 335 CIVFTSSVESTHRLCTLLNHF----G--ELRIKIKEYSGLQRQSVRSKTLKAFRE---G--KIQVLVSSDAMTRGMDVEG 403 (515)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~----~--~~~~~v~~~~~~~~~~~r~~~l~~f~~---g--~~~vLv~T~~~~~GiDi~~ 403 (515)
++||....++.+..++.+..- + ....++..+|. .+...+.+.... | ..+|+|+|++++..+-+++
T Consensus 256 ilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLyP----~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidg 331 (699)
T KOG0925|consen 256 ILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLYP----AQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDG 331 (699)
T ss_pred EEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecCc----hhhccccCCCCcccCCCccceEEEEecchheeeeecc
Confidence 999999999998888887531 1 12356777773 222333322221 1 3589999999999999999
Q ss_pred CCEEEEccC------------------CCChhhhHHhhhhcccCCCCccEEEEeech
Q 010196 404 VNNVVNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (515)
Q Consensus 404 v~~VI~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (515)
+.+||.-++ |.|-.+-.||.||+||. .+|.|+.+++++
T Consensus 332 iv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt-~pGkcfrLYte~ 387 (699)
T KOG0925|consen 332 IVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEE 387 (699)
T ss_pred EEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCC-CCCceEEeecHH
Confidence 999998553 45666778999999998 689999999865
No 146
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.72 E-value=5.6e-17 Score=163.98 Aligned_cols=360 Identities=19% Similarity=0.197 Sum_probs=215.8
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
.++.+||...+++.+.....+-|.|+...||.|||...+. ++.++...+.....-+|+||+..|.. |..+|..|++.
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K~~~GP~LvivPlstL~N-W~~Ef~kWaPS- 469 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHKQMQGPFLIIVPLSTLVN-WSSEFPKWAPS- 469 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHcccCCCeEEeccccccCC-chhhccccccc-
Confidence 4799999999999888777788999999999999997554 55555554433345899999988865 88999999764
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC-CCCCcceEEEEcchh
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-FTLEHLCYLVVDETD 207 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-~~~~~~~~vViDEah 207 (515)
+..+...|.......... +-....++|+++|++.++. .+. +.--++.++||||.|
T Consensus 470 -v~~i~YkGtp~~R~~l~~-------------------qir~gKFnVLlTtyEyiik----dk~lLsKI~W~yMIIDEGH 525 (1157)
T KOG0386|consen 470 -VQKIQYKGTPQQRSGLTK-------------------QQRHGKFNVLLTTYEYIIK----DKALLSKISWKYMIIDEGH 525 (1157)
T ss_pred -eeeeeeeCCHHHHhhHHH-------------------HHhcccceeeeeeHHHhcC----CHHHHhccCCcceeecccc
Confidence 334444443322222111 1122457999999887754 122 222356799999999
Q ss_pred HHHHH----------HH-------------HhHHHHHHhhcccCcccccCCccccccc---c---ccc---------h--
Q 010196 208 RLLRE----------AY-------------QAWLPTVLQLTRSDNENRFSDASTFLPS---A---FGS---------L-- 247 (515)
Q Consensus 208 ~l~~~----------~~-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~---~~~---------~-- 247 (515)
+|-+. .+ ...++.++.++...-+..|....+|-.. - .+. +
T Consensus 526 RmKNa~~KLt~~L~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLI 605 (1157)
T KOG0386|consen 526 RMKNAICKLTDTLNTHYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLI 605 (1157)
T ss_pred cccchhhHHHHHhhccccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHH
Confidence 97331 11 1122222222222222222221111000 0 000 0
Q ss_pred -----hhhhccccccCCCCC-----CCCc--eeeEEEEEEecCCc--------------------------hhhhhcccC
Q 010196 248 -----KTIRRCGVERGFKDK-----PYPR--LVKMVLSATLTQDP--------------------------NKLAQLDLH 289 (515)
Q Consensus 248 -----~~~~~~~~~~~~~~~-----~~~~--~~~i~~SaT~~~~~--------------------------~~~~~~~~~ 289 (515)
..+++ ...+..+.. |... +...-+||--..-+ ....+..++
T Consensus 606 IrRLHkVLRP-FlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCN 684 (1157)
T KOG0386|consen 606 IRRLHKVLRP-FLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCN 684 (1157)
T ss_pred HHHHHHhhhH-HHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcC
Confidence 00000 000000000 0000 00011111100000 000111122
Q ss_pred CCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccC
Q 010196 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~ 367 (515)
+|..+............. ........|++.|..++.+. .+++++.||.-......+..+|.-.. ++...+.|
T Consensus 685 HP~lf~~ve~~~~~~~~~---~dL~R~sGKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~---~kYlRLDG 758 (1157)
T KOG0386|consen 685 HPYLFANVENSYTLHYDI---KDLVRVSGKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIRE---YKYLRLDG 758 (1157)
T ss_pred CchhhhhhccccccccCh---hHHHHhccHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhh---hheeeecC
Confidence 222221100000000000 12233567888888888755 57899999999998999999997655 88999999
Q ss_pred ccCHHHHHHHHHHHhcCC---ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeech
Q 010196 368 LQRQSVRSKTLKAFREGK---IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD 442 (515)
Q Consensus 368 ~~~~~~r~~~l~~f~~g~---~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~ 442 (515)
....++|-..++.|+.-+ ...|++|.+.+.|+|+..++.||+||..|++..+.|+--|+.|.|+.-.|-++....
T Consensus 759 ~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d~qaqdrahrigq~~evRv~rl~t 836 (1157)
T KOG0386|consen 759 QTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQDRAHRIGQKKEVRVLRLIT 836 (1157)
T ss_pred CcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhHHHHHHHHHHhhchhheeeeeeeh
Confidence 999999999999999755 356899999999999999999999999999999999999999999986665554433
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=1.7e-15 Score=156.41 Aligned_cols=124 Identities=17% Similarity=0.168 Sum_probs=96.7
Q ss_pred cCCCcHHHHHHHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEec
Q 010196 315 ESKLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (515)
Q Consensus 315 ~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T 392 (515)
....|...+.+.+.. ..+.|+||-+.|++..+.++++|...+ ++..++++.....+-+-+-++=+. -.|.|||
T Consensus 609 t~~eK~~Aii~ei~~~~~~GrPVLVGT~SVe~SE~lS~~L~~~g---I~H~VLNAK~h~~EAeIVA~AG~~--GaVTIAT 683 (1112)
T PRK12901 609 TKREKYNAVIEEITELSEAGRPVLVGTTSVEISELLSRMLKMRK---IPHNVLNAKLHQKEAEIVAEAGQP--GTVTIAT 683 (1112)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHHHcC---CcHHHhhccchhhHHHHHHhcCCC--CcEEEec
Confidence 344566666665553 368899999999999999999999876 666677776544443333333223 3789999
Q ss_pred CCccccCCCC--------CCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 393 DAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 393 ~~~~~GiDi~--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
++++||.||. +=-+||-...+.|.+--.|..||+||.|.+|.+.+|++-+|
T Consensus 684 NMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQGDPGsS~f~lSLED 742 (1112)
T PRK12901 684 NMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLED 742 (1112)
T ss_pred cCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCCCCCcceEEEEccc
Confidence 9999999997 22388989999999999999999999999999999998776
No 148
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.70 E-value=1.3e-15 Score=155.40 Aligned_cols=132 Identities=22% Similarity=0.256 Sum_probs=105.3
Q ss_pred cHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC--ceEEEecCC
Q 010196 319 KPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSDA 394 (515)
Q Consensus 319 k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~--~~vLv~T~~ 394 (515)
|+..|.-+|++. .+.++|||+.-.+..+.|...|+-+| +-+..+.|...-++|+.++++|+.+. ...|++|..
T Consensus 1261 KLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHg---ylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrS 1337 (1958)
T KOG0391|consen 1261 KLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHG---YLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRS 1337 (1958)
T ss_pred hHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcc---eEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccC
Confidence 333344444432 45799999999999999999998776 89999999999999999999999875 466899999
Q ss_pred ccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHH
Q 010196 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~ 453 (515)
.+.|||+.+++.||.||..|++..-.|.--|+.|.|+.-.+.+|---++...-++++++
T Consensus 1338 ggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~TIEeniLkk 1396 (1958)
T KOG0391|consen 1338 GGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTIEENILKK 1396 (1958)
T ss_pred CccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccchHHHHHHhh
Confidence 99999999999999999999999999999999999987666554433332223344444
No 149
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.70 E-value=8.4e-16 Score=158.49 Aligned_cols=325 Identities=17% Similarity=0.221 Sum_probs=205.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH-HHhcccc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF-AAIAPAV 128 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~-~~~~~~~ 128 (515)
...|+|.++++... ..+.++++.+|+|||||.++-++++. +....++++++|..+.+..++..+ +++....
T Consensus 1143 ~~n~iqtqVf~~~y---~~nd~v~vga~~gsgkt~~ae~a~l~-----~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~ 1214 (1674)
T KOG0951|consen 1143 DFNPIQTQVFTSLY---NTNDNVLVGAPNGSGKTACAELALLR-----PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLL 1214 (1674)
T ss_pred ccCCceEEEEeeee---cccceEEEecCCCCchhHHHHHHhcC-----CccceEEEEecchHHHHHHHHHHHHHhhcccc
Confidence 45889988865543 35688999999999999998887774 455678999999999998666655 4565667
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
|..+..+.|..+.+... ....+|+|+||+++-.+ + ....+++.|+||.|.
T Consensus 1215 G~~~~~l~ge~s~~lkl------------------------~~~~~vii~tpe~~d~l-q-----~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1215 GLRIVKLTGETSLDLKL------------------------LQKGQVIISTPEQWDLL-Q-----SIQQVDLFIVDELHL 1264 (1674)
T ss_pred CceEEecCCccccchHH------------------------hhhcceEEechhHHHHH-h-----hhhhcceEeeehhhh
Confidence 88999999988866543 23449999999997444 2 356788999999997
Q ss_pred HHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhccc
Q 010196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL 288 (515)
Q Consensus 209 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~ 288 (515)
+. ..++..++-++. +... .. .-...++++.+|..+.+ ...+ .+.
T Consensus 1265 ig-g~~g~v~evi~S-~r~i------------a~-------------------q~~k~ir~v~ls~~lan-a~d~--ig~ 1308 (1674)
T KOG0951|consen 1265 IG-GVYGAVYEVICS-MRYI------------AS-------------------QLEKKIRVVALSSSLAN-ARDL--IGA 1308 (1674)
T ss_pred hc-ccCCceEEEEee-HHHH------------HH-------------------HHHhheeEEEeehhhcc-chhh--ccc
Confidence 54 322222221111 0000 00 00022356777766643 2222 222
Q ss_pred CCCeeEeeCCccccCCcccceeEEeccCC-CcH----HHHHHHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCC----
Q 010196 289 HHPLFLTTGETRYKLPERLESYKLICESK-LKP----LYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGE---- 357 (515)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~----~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~---- 357 (515)
....++...+.....|..++-..+..... ... ...+..+.+ .++.+++||++++++|..++..|-.+..
T Consensus 1309 s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~ 1388 (1674)
T KOG0951|consen 1309 SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEP 1388 (1674)
T ss_pred cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcH
Confidence 22223333333333333322222111111 111 111222222 2577999999999999888765532210
Q ss_pred ---------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEcc-----------
Q 010196 358 ---------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD----------- 411 (515)
Q Consensus 358 ---------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~----------- 411 (515)
...+..+-|-+++..+..-+-..|..|.+.|+|...- ..|+-.. .+.||..+
T Consensus 1389 ~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~ 1466 (1674)
T KOG0951|consen 1389 DYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSY 1466 (1674)
T ss_pred HHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-ccccccc-ceEEEEecceeeccccccc
Confidence 1122233388999999889999999999999988776 7777765 34555422
Q ss_pred CCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHH
Q 010196 412 KPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 412 ~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~ 453 (515)
.+-+.....|+.|+|.| .|.|+++++..+...+++++..
T Consensus 1467 ~~y~i~~ll~m~G~a~~---~~k~vi~~~~~~k~yykkfl~e 1505 (1674)
T KOG0951|consen 1467 EDYPIAELLQMVGLASG---AGKCVIMCHTPKKEYYKKFLYE 1505 (1674)
T ss_pred ccCchhHHHHHhhhhcC---CccEEEEecCchHHHHHHhccC
Confidence 23347788999999988 4799999999998888887544
No 150
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.68 E-value=2.3e-15 Score=146.82 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=107.0
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCc-eEEEec
Q 010196 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI-QVLVSS 392 (515)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~-~vLv~T 392 (515)
...|+..|..+|.+. .+.++|+|+.-.+....+.++|...+ +....+.|.....+|..++..|...++ -.|++|
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~---Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLST 1102 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRG---YTYLRLDGSSKASDRRDVVRDWQASDIFVFLLST 1102 (1185)
T ss_pred cccceeeHHHHHHHhhcCCceEEehhHHHHHHHHHHHHHHhhc---cceEEecCcchhhHHHHHHhhccCCceEEEEEec
Confidence 445666677777654 57899999999999999999998776 899999999999999999999998664 458999
Q ss_pred CCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCcc--EEEEeechh
Q 010196 393 DAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR--CFTLLHKDE 443 (515)
Q Consensus 393 ~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~--~~~~~~~~d 443 (515)
.+.+.|||+..++.||.||..|++..-.|.+.||+|-|+.-. ++-++....
T Consensus 1103 RAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgT 1155 (1185)
T KOG0388|consen 1103 RAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGT 1155 (1185)
T ss_pred ccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeeccccc
Confidence 999999999999999999999999999999999999998744 454555443
No 151
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.66 E-value=4.1e-16 Score=137.87 Aligned_cols=147 Identities=22% Similarity=0.212 Sum_probs=90.9
Q ss_pred CcchhhHHHHHHHhCCCCC---CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLF---ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~---~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
+|+++|.+|+..++..+.. .+++++.+|||+|||.+++..+.+... ++++++|+..|++|+.+.+..+..
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-------~~l~~~p~~~l~~Q~~~~~~~~~~ 75 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-------KVLIVAPNISLLEQWYDEFDDFGS 75 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-------EEEEEESSHHHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-------ceeEecCHHHHHHHHHHHHHHhhh
Confidence 6899999999988865443 488999999999999998765554433 799999999999999999977654
Q ss_pred ccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCc----------CCCCC
Q 010196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATR----------GFTLE 196 (515)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~----------~~~~~ 196 (515)
................. ...............-....+++++|.+.+........ .....
T Consensus 76 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 145 (184)
T PF04851_consen 76 EKYNFFEKSIKPAYDSK----------EFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKN 145 (184)
T ss_dssp TSEEEEE--GGGCCE-S----------EEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGG
T ss_pred hhhhhcccccccccccc----------cccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccc
Confidence 32111100000000000 00000000000111223456899999999987764311 12345
Q ss_pred cceEEEEcchhHHHHHH
Q 010196 197 HLCYLVVDETDRLLREA 213 (515)
Q Consensus 197 ~~~~vViDEah~l~~~~ 213 (515)
..++||+||||++....
T Consensus 146 ~~~~vI~DEaH~~~~~~ 162 (184)
T PF04851_consen 146 KFDLVIIDEAHHYPSDS 162 (184)
T ss_dssp SESEEEEETGGCTHHHH
T ss_pred cCCEEEEehhhhcCCHH
Confidence 67899999999986665
No 152
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.65 E-value=7.6e-15 Score=123.67 Aligned_cols=121 Identities=39% Similarity=0.652 Sum_probs=92.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHh
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (515)
+++++.+|||+|||.+++..+.+..... ...+++|++|++.++.|+.+.+...... +..+..+.+.........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~--~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--- 74 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL--KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEK--- 74 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc--cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHH---
Confidence 4689999999999999888888776652 3458999999999999999999988765 577777777655443321
Q ss_pred ccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHH
Q 010196 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQ 215 (515)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~ 215 (515)
......+|+++|++.+...+.... .....+++||+||+|.+......
T Consensus 75 ------------------~~~~~~~i~i~t~~~~~~~~~~~~-~~~~~~~~iiiDE~h~~~~~~~~ 121 (144)
T cd00046 75 ------------------LLSGKTDIVVGTPGRLLDELERLK-LSLKKLDLLILDEAHRLLNQGFG 121 (144)
T ss_pred ------------------HhcCCCCEEEECcHHHHHHHHcCC-cchhcCCEEEEeCHHHHhhcchH
Confidence 123567999999999988776532 33557889999999998665443
No 153
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.64 E-value=1.8e-14 Score=135.33 Aligned_cols=124 Identities=22% Similarity=0.182 Sum_probs=101.4
Q ss_pred CcHHHHHHHHHhc----CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC-CceE-EEe
Q 010196 318 LKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQV-LVS 391 (515)
Q Consensus 318 ~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g-~~~v-Lv~ 391 (515)
.|.+.|.+.+... ..-|.|||.......+.+.-.|...| +.+.-+.|+|++..|+..++.|+++ ++.| |++
T Consensus 620 TKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaG---fscVkL~GsMs~~ardatik~F~nd~~c~vfLvS 696 (791)
T KOG1002|consen 620 TKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAG---FSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVS 696 (791)
T ss_pred hHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhccC---ceEEEeccCCChHHHHHHHHHhccCCCeEEEEEE
Confidence 3555555544322 23478999988888888888887666 8999999999999999999999976 5666 677
Q ss_pred cCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC--ccEEEEeechhH
Q 010196 392 SDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEV 444 (515)
Q Consensus 392 T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d~ 444 (515)
-.+.+..+|+..+++|+..|+.|++..-.|...|.+|.|+. -.++.|+-++.+
T Consensus 697 LkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEnsi 751 (791)
T KOG1002|consen 697 LKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIENSI 751 (791)
T ss_pred eccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhccH
Confidence 78889999999999999999999999999999999999975 567778766654
No 154
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.60 E-value=2.5e-15 Score=113.47 Aligned_cols=81 Identities=43% Similarity=0.709 Sum_probs=75.0
Q ss_pred HHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhc
Q 010196 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRT 426 (515)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~ 426 (515)
.+++.|...+ +.+..+||+++..+|..+++.|+++...+|++|+++++|+|+|++++||.+++|++...|.|++||+
T Consensus 2 ~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~ 78 (82)
T smart00490 2 ELAELLKELG---IKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRA 78 (82)
T ss_pred HHHHHHHHCC---CeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccc
Confidence 4566666554 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 010196 427 ARAG 430 (515)
Q Consensus 427 gR~g 430 (515)
+|.|
T Consensus 79 ~R~g 82 (82)
T smart00490 79 GRAG 82 (82)
T ss_pred ccCC
Confidence 9976
No 155
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.59 E-value=1.4e-13 Score=143.03 Aligned_cols=339 Identities=19% Similarity=0.146 Sum_probs=194.3
Q ss_pred cchhhHHHHHHHhCC----CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 51 LFPVQVAVWQETIGP----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~----~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
-+.||-+|+..+... ...|-=++=.|.||+|||++=+- |+..|.. ...+.|..|..-.|.|.-|.-+.+++-+.
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNAR-ImyaLsd-~~~g~RfsiALGLRTLTLQTGda~r~rL~ 486 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANAR-AMYALRD-DKQGARFAIALGLRSLTLQTGHALKTRLN 486 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHH-HHHHhCC-CCCCceEEEEccccceeccchHHHHHhcC
Confidence 467899998765431 11112255589999999997443 4545544 34667899999999999999999999876
Q ss_pred ccCcEEEEeecCCchHHHHHHHhccCcc-------cc-----------cccCCc----hhHHHhhc--------cCCcEE
Q 010196 127 AVGLSVGLAVGQSSIADEISELIKRPKL-------EA-----------GICYDP----EDVLQELQ--------SAVDIL 176 (515)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~-------~~-----------~~~~~~----~~~~~~l~--------~~~~Iv 176 (515)
-.+-...++.|+....+........... +. .+.+.. ..+...+. -..+|+
T Consensus 487 L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~ 566 (1110)
T TIGR02562 487 LSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVL 566 (1110)
T ss_pred CCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeE
Confidence 6667888999998766554322111100 00 011110 01111111 125899
Q ss_pred EeCChHHHHHHhcC--cCCCCC--c--ceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhh
Q 010196 177 VATPGRLMDHINAT--RGFTLE--H--LCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTI 250 (515)
Q Consensus 177 v~Tp~~l~~~l~~~--~~~~~~--~--~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (515)
|||++.++...... +...+. . =+.|||||+|.+. ......+..++......
T Consensus 567 V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD-~~~~~~L~rlL~w~~~l---------------------- 623 (1110)
T TIGR02562 567 VCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYE-PEDLPALLRLVQLAGLL---------------------- 623 (1110)
T ss_pred EecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCC-HHHHHHHHHHHHHHHHc----------------------
Confidence 99999998876321 222111 1 2579999999853 33334455555543321
Q ss_pred hccccccCCCCCCCCceeeEEEEEEecCCchhh-hhcc----------cC---CCeeEee-CCcccc-------------
Q 010196 251 RRCGVERGFKDKPYPRLVKMVLSATLTQDPNKL-AQLD----------LH---HPLFLTT-GETRYK------------- 302 (515)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~-~~~~----------~~---~~~~~~~-~~~~~~------------- 302 (515)
+.+++++|||+++..... ...+ .. .+..+.. -..++.
T Consensus 624 ---------------G~~VlLmSATLP~~l~~~L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~ 688 (1110)
T TIGR02562 624 ---------------GSRVLLSSATLPPALVKTLFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFI 688 (1110)
T ss_pred ---------------CCCEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHH
Confidence 237899999998664321 1111 11 1111111 000000
Q ss_pred -------------CC--cccceeE-EeccCCC-----cHHHHHHHH--------Hhc----C-CCe----EEEEcCChhh
Q 010196 303 -------------LP--ERLESYK-LICESKL-----KPLYLVALL--------QSL----G-EEK----CIVFTSSVES 344 (515)
Q Consensus 303 -------------~~--~~~~~~~-~~~~~~~-----k~~~l~~~l--------~~~----~-~~~----~lVf~~s~~~ 344 (515)
+. ...+... +.++... ....+...+ +.. + .++ .+|-+++++.
T Consensus 689 ~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p 768 (1110)
T TIGR02562 689 QRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDP 768 (1110)
T ss_pred HHHHHHHHHHHHHHhcCcccceEEEeecCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchH
Confidence 00 0000111 1111111 111111111 111 1 222 4677888888
Q ss_pred HHHHHHHHhhcCC---CceeEEEccCccCHHHHHHHHHHH----------------------hc----CCceEEEecCCc
Q 010196 345 THRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAF----------------------RE----GKIQVLVSSDAM 395 (515)
Q Consensus 345 ~~~l~~~L~~~~~---~~~~v~~~~~~~~~~~r~~~l~~f----------------------~~----g~~~vLv~T~~~ 395 (515)
+-.+++.|-.... ..+.++.||+..+...|..+.+.. ++ +...|+|+|++.
T Consensus 769 ~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~ 848 (1110)
T TIGR02562 769 LIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVE 848 (1110)
T ss_pred HHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeE
Confidence 8888887754321 346688999999887777665543 11 356899999999
Q ss_pred cccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 396 TRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 396 ~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
+.|+|+. .+++|. -|.+.++.+|++||+.|.|..
T Consensus 849 E~g~D~d-fd~~~~--~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 849 EVGRDHD-YDWAIA--DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEEeccc-CCeeee--ccCcHHHHHHHhhcccccccC
Confidence 9999985 566653 355699999999999998754
No 156
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.58 E-value=5.7e-14 Score=144.47 Aligned_cols=105 Identities=16% Similarity=0.131 Sum_probs=80.3
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhcc
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKR 151 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~ 151 (515)
.+..+.+|||||.+|+-.+-+.+..++ .+||++|..+|..|+.+.|+..+. +..+..++++.+..+....+
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~Gk----~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w--- 233 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAGR----GALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRW--- 233 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcCC----eEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHH---
Confidence 344444699999999988777776643 799999999999999999998864 25688899988877765443
Q ss_pred CcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 152 PKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
..+.. ...|+|||-..+ ...+.++.+||+||-|.
T Consensus 234 ---------------~~~~~G~~~IViGtRSAv--------FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 234 ---------------LAVLRGQARVVVGTRSAV--------FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred ---------------HHHhCCCCcEEEEcceeE--------EeccCCCCEEEEEcCCc
Confidence 34444 479999993322 23578899999999994
No 157
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.55 E-value=1.3e-13 Score=134.85 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=85.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhc--CCceE-EEecCCccccCCCCCCCEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--GKIQV-LVSSDAMTRGMDVEGVNNV 407 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~--g~~~v-Lv~T~~~~~GiDi~~v~~V 407 (515)
...+++|...=......+...|+..+ ..+..+||....++|+.+++.|.. |..+| |++-.+.+.|+|+-+.+|+
T Consensus 745 skeK~viVSQwtsvLniv~~hi~~~g---~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHl 821 (901)
T KOG4439|consen 745 SKEKVVIVSQWTSVLNIVRKHIQKGG---HIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHL 821 (901)
T ss_pred ccceeeehhHHHHHHHHHHHHHhhCC---eeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceE
Confidence 45566665554555566667777655 889999999999999999999984 33444 6777888999999999999
Q ss_pred EEccCCCChhhhHHhhhhcccCCCCccEEEE
Q 010196 408 VNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (515)
Q Consensus 408 I~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 438 (515)
|.+|+.|++..-.|+.-|.-|.|++-.+++.
T Consensus 822 ilvDlHWNPaLEqQAcDRIYR~GQkK~V~Ih 852 (901)
T KOG4439|consen 822 ILVDLHWNPALEQQACDRIYRMGQKKDVFIH 852 (901)
T ss_pred EEEecccCHHHHHHHHHHHHHhcccCceEEE
Confidence 9999999999999999999999998766544
No 158
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.51 E-value=1.7e-11 Score=118.38 Aligned_cols=339 Identities=17% Similarity=0.217 Sum_probs=215.3
Q ss_pred hcccCcccEEEEcccHHHHHHHHHHHHHhcccc-CcE----EEEeec----CCc----------hHHHHHHHhc---cCc
Q 010196 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV-GLS----VGLAVG----QSS----------IADEISELIK---RPK 153 (515)
Q Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~----v~~~~g----~~~----------~~~~~~~~~~---~~~ 153 (515)
..+-..|+||||+|+|.-|.++.+.+-++++.. .+. ...-+| +.. .......+.. .-.
T Consensus 32 DQGftRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~ 111 (442)
T PF06862_consen 32 DQGFTRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDC 111 (442)
T ss_pred ccCCCCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccce
Confidence 334567899999999999999999999887651 000 000000 000 0001111100 000
Q ss_pred ccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcC----cC-CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhccc
Q 010196 154 LEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINAT----RG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (515)
Q Consensus 154 ~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~----~~-~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~ 227 (515)
+..|+.+++..+.-.-. ...|||||+|=-|...+... .. -.++.+.++|+|.||.|+-.+ .+.+..+++.++.
T Consensus 112 FrlGik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQN-W~Hv~~v~~~lN~ 190 (442)
T PF06862_consen 112 FRLGIKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQN-WEHVLHVFEHLNL 190 (442)
T ss_pred EEEeEEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhh-HHHHHHHHHHhcc
Confidence 11222222222111111 24799999999888777641 11 137889999999999865444 4567777777664
Q ss_pred Cc-ccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCC---eeEeeCCc----
Q 010196 228 DN-ENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP---LFLTTGET---- 299 (515)
Q Consensus 228 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~---~~~~~~~~---- 299 (515)
.. ..+..+.....+.++...+...+ |++++|+...++...+....+.+. +.+.....
T Consensus 191 ~P~~~~~~DfsRVR~w~Ldg~a~~~R---------------Qtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~ 255 (442)
T PF06862_consen 191 QPKKSHDTDFSRVRPWYLDGQAKYYR---------------QTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGV 255 (442)
T ss_pred CCCCCCCCCHHHHHHHHHcCcchhee---------------EeEEecCCCCHHHHHHHHhhCcCccceEEEeecccccee
Confidence 43 34446666666777666655554 899999999887777666533321 11111111
Q ss_pred cccCCcccceeEEecc-------CCCcHHHHH----HHHH-hcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccC
Q 010196 300 RYKLPERLESYKLICE-------SKLKPLYLV----ALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG 367 (515)
Q Consensus 300 ~~~~~~~~~~~~~~~~-------~~~k~~~l~----~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~ 367 (515)
...+...+.+.+...+ .+.++.... ..+. ....+.+|||++|.-.--.|.++|.... +..+.+|-
T Consensus 256 i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~---~sF~~i~E 332 (442)
T PF06862_consen 256 ISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKEN---ISFVQISE 332 (442)
T ss_pred eeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcC---CeEEEecc
Confidence 1122233334333222 122333322 2223 3346789999999999999999998544 78888888
Q ss_pred ccCHHHHHHHHHHHhcCCceEEEecCCcc--ccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCC------CccEEEEe
Q 010196 368 LQRQSVRSKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ------LGRCFTLL 439 (515)
Q Consensus 368 ~~~~~~r~~~l~~f~~g~~~vLv~T~~~~--~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~------~g~~~~~~ 439 (515)
-.+..+-..+-..|..|+.++|+.|.-+- +-..+.+++.||.|.+|..+.-|-..+.-.+.... ...|.+++
T Consensus 333 Yts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~ly 412 (442)
T PF06862_consen 333 YTSNSDISRARSQFFHGRKPILLYTERFHFFRRYRIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLY 412 (442)
T ss_pred cCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhceecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEe
Confidence 88888888999999999999999997643 56778899999999999998877777655444432 47899999
Q ss_pred echhHHHHHHHHHH
Q 010196 440 HKDEVKRFKKLLQK 453 (515)
Q Consensus 440 ~~~d~~~~~~~~~~ 453 (515)
+.-|.-.++++.-.
T Consensus 413 sk~D~~~LErIVGt 426 (442)
T PF06862_consen 413 SKYDALRLERIVGT 426 (442)
T ss_pred cHhHHHHHHHHhCH
Confidence 99998888877543
No 159
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.51 E-value=1.5e-13 Score=128.83 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.8
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc--CcccEEEEcccHHHHHHHHHHHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
|.| +|||.|.+.+..+...+..|.++++.||||+|||+++++|++.++...+. .+.+++|+++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00488 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 47999999999888888889999999999999999999999988765432 234799999999999998888877
Q ss_pred hc
Q 010196 124 IA 125 (515)
Q Consensus 124 ~~ 125 (515)
..
T Consensus 84 ~~ 85 (289)
T smart00488 84 LM 85 (289)
T ss_pred cc
Confidence 63
No 160
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.51 E-value=1.5e-13 Score=128.83 Aligned_cols=79 Identities=18% Similarity=0.122 Sum_probs=66.8
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc--CcccEEEEcccHHHHHHHHHHHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
|.| +|||.|.+.+..+...+..|.++++.||||+|||+++++|++.++...+. .+.+++|+++|.++..|....+++
T Consensus 5 FPy-~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~ 83 (289)
T smart00489 5 FPY-EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRK 83 (289)
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHh
Confidence 455 47999999999888888889999999999999999999999988765432 234799999999999998888877
Q ss_pred hc
Q 010196 124 IA 125 (515)
Q Consensus 124 ~~ 125 (515)
..
T Consensus 84 ~~ 85 (289)
T smart00489 84 LM 85 (289)
T ss_pred cc
Confidence 63
No 161
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.47 E-value=1.1e-12 Score=144.58 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=104.7
Q ss_pred CcHHHHHHHH-H--hcCCC--eEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC--CceEEE
Q 010196 318 LKPLYLVALL-Q--SLGEE--KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG--KIQVLV 390 (515)
Q Consensus 318 ~k~~~l~~~l-~--~~~~~--~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g--~~~vLv 390 (515)
.|...+.+++ . ...+. ++++|++.......+...+...+ +.+..++|+++...|...++.|.++ ...+++
T Consensus 692 ~k~~~l~~ll~~~~~~~~~~~kvlifsq~t~~l~il~~~l~~~~---~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~ll 768 (866)
T COG0553 692 GKLQALDELLLDKLLEEGHYHKVLIFSQFTPVLDLLEDYLKALG---IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLL 768 (866)
T ss_pred hHHHHHHHHHHHHHHhhcccccEEEEeCcHHHHHHHHHHHHhcC---CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEE
Confidence 5677777777 3 22455 89999999999999999998766 7899999999999999999999986 456678
Q ss_pred ecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEE--EEeechh
Q 010196 391 SSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF--TLLHKDE 443 (515)
Q Consensus 391 ~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~--~~~~~~d 443 (515)
++.+.+.|+|+...++||++|..+++....|+..|+.|.|+...+. -++..+.
T Consensus 769 s~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~t 823 (866)
T COG0553 769 SLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRGT 823 (866)
T ss_pred EecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCCc
Confidence 8899999999999999999999999999999999999999986554 4444443
No 162
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.44 E-value=4.8e-12 Score=127.63 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=101.0
Q ss_pred CcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCC-------------------CceeEEEccCccCHHHHHH
Q 010196 318 LKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGE-------------------LRIKIKEYSGLQRQSVRSK 376 (515)
Q Consensus 318 ~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~-------------------~~~~v~~~~~~~~~~~r~~ 376 (515)
.|+.+|+.+|+.. -+.+.|||..+......|..+|..... .+.....+.|......|..
T Consensus 1126 gKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1126 GKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred cceehHHHHHHHHHHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 4555677777644 378999999999999999998854211 2346788999999999999
Q ss_pred HHHHHhcCC----ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEE
Q 010196 377 TLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTL 438 (515)
Q Consensus 377 ~l~~f~~g~----~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 438 (515)
+.+.|++-. .-.||+|.+.+.|||+-.++.||+||..|++.--.|.+=|+.|+|+.--||+|
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiY 1271 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIY 1271 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeeh
Confidence 999998653 23689999999999999999999999999999999999999999998766665
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=99.40 E-value=1e-11 Score=127.07 Aligned_cols=355 Identities=20% Similarity=0.213 Sum_probs=198.5
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|+ .|+.+|. +..+..+..-+..+-||-|||+++.+|+.-.... +..+.+++...-|+..-++++..+.
T Consensus 77 lg~-~~~dVQl------iG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~----gkgVhvVTvNdYLA~RDae~m~~l~ 145 (822)
T COG0653 77 LGM-RHFDVQL------LGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA----GKGVHVVTVNDYLARRDAEWMGPLY 145 (822)
T ss_pred cCC-ChhhHHH------hhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC----CCCcEEeeehHHhhhhCHHHHHHHH
Confidence 354 4666664 3344456778999999999999999998754444 3379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+|++|++...+.+..++...+ .+||.++|-..| .++++.+. ......+.
T Consensus 146 ~~LGlsvG~~~~~m~~~ek~~aY-----------------------~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~ 202 (822)
T COG0653 146 EFLGLSVGVILAGMSPEEKRAAY-----------------------ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLN 202 (822)
T ss_pred HHcCCceeeccCCCChHHHHHHH-----------------------hcCceeccccccCcchhhhhhhccHHHhhhccCC
Confidence 99999999999998776664433 359999997655 23332211 11234688
Q ss_pred EEEEcchhHHHHH----------------HHHhHHHHHHhhcccCcccc---------cCCcc-cccccccc-----ch-
Q 010196 200 YLVVDETDRLLRE----------------AYQAWLPTVLQLTRSDNENR---------FSDAS-TFLPSAFG-----SL- 247 (515)
Q Consensus 200 ~vViDEah~l~~~----------------~~~~~~~~i~~~~~~~~~~~---------~~~~~-~~~~~~~~-----~~- 247 (515)
+.|+||+|.++=+ .....+..+...+.....-. +.+.. ....+++. ..
T Consensus 203 faIvDEvDSILIDEARtPLiISG~~~~~~~~Y~~~~~~v~~l~~~~d~~iDek~k~v~lte~G~~kae~~f~~~~Ly~~e 282 (822)
T COG0653 203 FAIVDEVDSILIDEARTPLIISGPAEDSSELYKKVDDLVRLLSEDEDFTIDEKSKNVSLTESGLEKAEELLGIENLYDLE 282 (822)
T ss_pred eEEEcchhheeeeccccceeeecccccCchHHHHHHHHHHHhccccceeecchhcccccchhhHHHHHHHhCcccccchh
Confidence 9999999986421 11222222222221111000 00000 00000000 00
Q ss_pred ---------hhhhc--------------------------cccccCCCCC------------CCCce-------------
Q 010196 248 ---------KTIRR--------------------------CGVERGFKDK------------PYPRL------------- 267 (515)
Q Consensus 248 ---------~~~~~--------------------------~~~~~~~~~~------------~~~~~------------- 267 (515)
..++. ....+.+... ..+.-
T Consensus 283 n~~~~h~~~~alrA~~l~~~D~dYIVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR 362 (822)
T COG0653 283 NVNLVHHLNQALRAHILFFRDVDYIVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFR 362 (822)
T ss_pred hHHHHhhHHHHHHHHHHhhcCCeeEEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHh
Confidence 00000 0000000000 00000
Q ss_pred ---eeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHH--hcCCCeEEEEcCCh
Q 010196 268 ---VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQ--SLGEEKCIVFTSSV 342 (515)
Q Consensus 268 ---~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~--~~~~~~~lVf~~s~ 342 (515)
....||.|......++...+....+.+...... ...-..-.+......|...++..+. ...+.|+||-+.++
T Consensus 363 ~y~kl~gmTGTa~te~~EF~~iY~l~vv~iPTnrp~---~R~D~~D~vy~t~~~K~~Aiv~~I~~~~~~gqPvLvgT~si 439 (822)
T COG0653 363 LYPKLAGMTGTADTEEEEFDVIYGLDVVVIPTNRPI---IRLDEPDLVYKTEEEKFKAIVEDIKERHEKGQPVLVGTVSI 439 (822)
T ss_pred hhhhhcCCCCcchhhhhhhhhccCCceeeccCCCcc---cCCCCccccccchHHHHHHHHHHHHHHHhcCCCEEEcCcce
Confidence 011222222211222222221122222111110 0000111122233456666666554 33688999999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC-ceEEEecCCccccCCCCCCC-----------EEEEc
Q 010196 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEGVN-----------NVVNY 410 (515)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~-~~vLv~T~~~~~GiDi~~v~-----------~VI~~ 410 (515)
+..+.+.+.|.+.+ ++-.++...... ++.-+-.. .|. -.|-|||+++++|-|+.--. +||-.
T Consensus 440 e~SE~ls~~L~~~~---i~h~VLNAk~h~--~EA~Iia~-AG~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgT 513 (822)
T COG0653 440 EKSELLSKLLRKAG---IPHNVLNAKNHA--REAEIIAQ-AGQPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGT 513 (822)
T ss_pred ecchhHHHHHHhcC---CCceeeccccHH--HHHHHHhh-cCCCCccccccccccCCcccccCCCHHHHHHhCCcEEEec
Confidence 99999999999776 666666666553 33333322 333 36789999999999985211 45555
Q ss_pred cCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 411 DKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 411 ~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
.-..|..---|.-||+||.|-+|.+..|++-.|
T Consensus 514 ERhESRRIDnQLRGRsGRQGDpG~S~F~lSleD 546 (822)
T COG0653 514 ERHESRRIDNQLRGRAGRQGDPGSSRFYLSLED 546 (822)
T ss_pred ccchhhHHHHHhhcccccCCCcchhhhhhhhHH
Confidence 555555555699999999998899998888766
No 164
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.38 E-value=8.9e-11 Score=126.59 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=75.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (515)
++..+|+..||||||++.+..+- .+.+. ...+.+++||-.+.|-.|+.+.+..+........ ...+....
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~-~l~~~-~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L---- 342 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLAR-LLLEL-PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL---- 342 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHH-HHHhc-cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHH----
Confidence 46799999999999998655443 34333 5667899999999999999999999865432111 11222211
Q ss_pred hccCcccccccCCchhHHHhhccC-CcEEEeCChHHHHHHhcCcCC-CCCcceEEEEcchhHH
Q 010196 149 IKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRL 209 (515)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~l 209 (515)
.+.+... -.|+|+|.+.|-......... .-.+=-+||+||||+-
T Consensus 343 -----------------k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 343 -----------------KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred -----------------HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 1223322 389999999998777553111 1122237899999985
No 165
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.35 E-value=1.4e-10 Score=118.02 Aligned_cols=291 Identities=16% Similarity=0.191 Sum_probs=164.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHh
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELI 149 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 149 (515)
.-.++.||+|||||.+..-++-+.+. .+..++|+++-.++|+.++.+.++...-. +. ..+.+....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~---~~~~~VLvVShRrSL~~sL~~rf~~~~l~-gF---v~Y~d~~~~------- 115 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALK---NPDKSVLVVSHRRSLTKSLAERFKKAGLS-GF---VNYLDSDDY------- 115 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhcc---CCCCeEEEEEhHHHHHHHHHHHHhhcCCC-cc---eeeeccccc-------
Confidence 44688999999999875444443332 24558999999999999999999865211 11 111111100
Q ss_pred ccCcccccccCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHH---HHh--
Q 010196 150 KRPKLEAGICYDPEDVLQELQ-SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPT---VLQ-- 223 (515)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~---i~~-- 223 (515)
.+. ...+-+++..+.|..... -.+.++++||+||+-..+..-+...+.+ +..
T Consensus 116 ------------------~i~~~~~~rLivqIdSL~R~~~----~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L 173 (824)
T PF02399_consen 116 ------------------IIDGRPYDRLIVQIDSLHRLDG----SLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLL 173 (824)
T ss_pred ------------------cccccccCeEEEEehhhhhccc----ccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHH
Confidence 011 134677888777765432 1255789999999998776533322221 111
Q ss_pred -hcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhccc-CCCeeEee-CCcc
Q 010196 224 -LTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHPLFLTT-GETR 300 (515)
Q Consensus 224 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~-~~~~ 300 (515)
.+-...+ .++++-|++....-++....- ..++.+.. ....
T Consensus 174 ~~lI~~ak-------------------------------------~VI~~DA~ln~~tvdFl~~~Rp~~~i~vI~n~y~~ 216 (824)
T PF02399_consen 174 KELIRNAK-------------------------------------TVIVMDADLNDQTVDFLASCRPDENIHVIVNTYAS 216 (824)
T ss_pred HHHHHhCC-------------------------------------eEEEecCCCCHHHHHHHHHhCCCCcEEEEEeeeec
Confidence 1111111 345555555443333322211 11111100 0000
Q ss_pred ------------------------------c---cCCcccceeEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHH
Q 010196 301 ------------------------------Y---KLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTH 346 (515)
Q Consensus 301 ------------------------------~---~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~ 346 (515)
. ........................++... .++++-||++|...++
T Consensus 217 ~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIcvfsSt~~~~~ 296 (824)
T PF02399_consen 217 PGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNICVFSSTVSFAE 296 (824)
T ss_pred CCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEEEEeChHHHHH
Confidence 0 00000000000001122233444444444 3567778999999999
Q ss_pred HHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCC--EEEEccCC----CChhhhH
Q 010196 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVN--NVVNYDKP----AYIKTYI 420 (515)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~--~VI~~~~p----~s~~~~~ 420 (515)
.+++...... .++..+++.-+..+ ++.| ++.+|++-|+++..|+++.... -|+-|=-| .+..+..
T Consensus 297 ~v~~~~~~~~---~~Vl~l~s~~~~~d----v~~W--~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~~~gpd~~s~~ 367 (824)
T PF02399_consen 297 IVARFCARFT---KKVLVLNSTDKLED----VESW--KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPMSYGPDMVSVY 367 (824)
T ss_pred HHHHHHHhcC---CeEEEEcCCCCccc----cccc--cceeEEEEeceEEEEeccchhhceEEEEEecCCCCCCcHHHHH
Confidence 9999887764 78888888766552 2333 5689999999999999997644 34444222 2355789
Q ss_pred HhhhhcccCCCCccEEEEeechh
Q 010196 421 HRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
|++||+..- ...+.+++++...
T Consensus 368 Q~lgRvR~l-~~~ei~v~~d~~~ 389 (824)
T PF02399_consen 368 QMLGRVRSL-LDNEIYVYIDASG 389 (824)
T ss_pred HHHHHHHhh-ccCeEEEEEeccc
Confidence 999999554 4677888887664
No 166
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.30 E-value=1.9e-11 Score=98.20 Aligned_cols=105 Identities=19% Similarity=0.163 Sum_probs=66.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISE 147 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 147 (515)
+|+--++-..+|+|||--.+.-++....+ .+.++|||.|||.++..+.+.++.. .+++....-..
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~---~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~-------- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK---RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR-------- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH---TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS---------
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH---ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec--------
Confidence 45667889999999999655444433332 3458999999999999988888754 33322111110
Q ss_pred HhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
....+.-|-++|...+...+.+. ....++++||+||||..
T Consensus 68 --------------------~~~g~~~i~vMc~at~~~~~~~p--~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 --------------------THFGSSIIDVMCHATYGHFLLNP--CRLKNYDVIIMDECHFT 107 (148)
T ss_dssp -----------------------SSSSEEEEEHHHHHHHHHTS--SCTTS-SEEEECTTT--
T ss_pred --------------------cccCCCcccccccHHHHHHhcCc--ccccCccEEEEeccccC
Confidence 01134478899999988877663 34678999999999975
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.24 E-value=2.2e-11 Score=116.61 Aligned_cols=130 Identities=21% Similarity=0.170 Sum_probs=81.0
Q ss_pred hhHHHHHHHhCCC---------CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCc--ccEEEEcccHHHHHHHHHHHH
Q 010196 54 VQVAVWQETIGPG---------LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC--LRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 54 ~Q~~a~~~~~~~~---------~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~--~~~lil~Pt~~L~~q~~~~~~ 122 (515)
+|.+++..++... ...+.++++..+|+|||+..+..+. .+....... ..+||++|. .+..||..++.
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~ 78 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIE 78 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhc
Confidence 4667766655433 3457899999999999998665444 443322111 249999999 88899999999
Q ss_pred HhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHH-----HHHhcCcCCCCCc
Q 010196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-----DHINATRGFTLEH 197 (515)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-----~~l~~~~~~~~~~ 197 (515)
+++.....++....|....... ........+|+|+|++.+. ..... +...+
T Consensus 79 ~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~~~~~~vvi~ty~~~~~~~~~~~~~~---l~~~~ 134 (299)
T PF00176_consen 79 KWFDPDSLRVIIYDGDSERRRL---------------------SKNQLPKYDVVITTYETLRKARKKKDKED---LKQIK 134 (299)
T ss_dssp HHSGT-TS-EEEESSSCHHHHT---------------------TSSSCCCSSEEEEEHHHHH--TSTHTTHH---HHTSE
T ss_pred cccccccccccccccccccccc---------------------cccccccceeeeccccccccccccccccc---ccccc
Confidence 9986545677777776511111 0112245699999999988 21111 11235
Q ss_pred ceEEEEcchhHH
Q 010196 198 LCYLVVDETDRL 209 (515)
Q Consensus 198 ~~~vViDEah~l 209 (515)
+++||+||+|.+
T Consensus 135 ~~~vIvDEaH~~ 146 (299)
T PF00176_consen 135 WDRVIVDEAHRL 146 (299)
T ss_dssp EEEEEETTGGGG
T ss_pred ceeEEEeccccc
Confidence 899999999987
No 168
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.23 E-value=6.7e-10 Score=106.05 Aligned_cols=381 Identities=18% Similarity=0.224 Sum_probs=221.0
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEE-CCCCchh--HHHhHHHHHHHhhhc---------------------------c
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCIN-SPTGSGK--TLSYALPIVQTLSNR---------------------------A 98 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~-a~TGsGK--T~~~~~~~~~~l~~~---------------------------~ 98 (515)
..+++.|.+.+..+. +-+|++.. ...+.|+ +-.|++-+++++.+. +
T Consensus 215 ~pltalQ~~L~~~m~----~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG 290 (698)
T KOG2340|consen 215 EPLTALQKELFKIMF----NYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQG 290 (698)
T ss_pred CcchHHHHHHHHHHH----hhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcC
Confidence 468999988755432 34666542 2223455 455777788777431 1
Q ss_pred cCcccEEEEcccHHHHHHHHHHHHHhccccCc-EE--------EEeecCC--------chHHHHHHHh---ccCcccccc
Q 010196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGL-SV--------GLAVGQS--------SIADEISELI---KRPKLEAGI 158 (515)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~-~v--------~~~~g~~--------~~~~~~~~~~---~~~~~~~~~ 158 (515)
...|+||||||+|+-|..+.+.+..++...+- +. .--+++. +..+....+. ..-.+..|.
T Consensus 291 ~tRpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl 370 (698)
T KOG2340|consen 291 FTRPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGL 370 (698)
T ss_pred CCCceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhH
Confidence 23578999999999999999999888543221 00 0001110 0011111110 001112233
Q ss_pred cCCchhHHHhhc-cCCcEEEeCChHHHHHHhcCcC----C-CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCc-cc
Q 010196 159 CYDPEDVLQELQ-SAVDILVATPGRLMDHINATRG----F-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN-EN 231 (515)
Q Consensus 159 ~~~~~~~~~~l~-~~~~Ivv~Tp~~l~~~l~~~~~----~-~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~-~~ 231 (515)
.++...+...-. ...||+||+|=-|...+.+.+. + .++.+.++|||-||.|+-.+| +.+..++..+.... ..
T Consensus 371 ~ftkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNw-Ehl~~ifdHLn~~P~k~ 449 (698)
T KOG2340|consen 371 AFTKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNW-EHLLHIFDHLNLQPSKQ 449 (698)
T ss_pred HHHHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhH-HHHHHHHHHhhcCcccc
Confidence 333333322212 2479999999988877763221 2 367789999999998876666 44666666655433 22
Q ss_pred ccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCC--------CeeEe--eCCccc
Q 010196 232 RFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHH--------PLFLT--TGETRY 301 (515)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~--------~~~~~--~~~~~~ 301 (515)
.-.+....++.++...+..-+ |+++||+-.......+....+.+ ++.-. .+....
T Consensus 450 h~~DfSRVR~wyL~~qsr~~r---------------Qtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~ 514 (698)
T KOG2340|consen 450 HDVDFSRVRMWYLDGQSRYFR---------------QTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGI 514 (698)
T ss_pred cCCChhheehheeccHHHHHH---------------HHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccc
Confidence 444555566666666554444 67777776544433332222111 11100 000111
Q ss_pred cCCccccee---EEeccCCCcHHHHHH-HHHhc---CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHH
Q 010196 302 KLPERLESY---KLICESKLKPLYLVA-LLQSL---GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVR 374 (515)
Q Consensus 302 ~~~~~~~~~---~~~~~~~~k~~~l~~-~l~~~---~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r 374 (515)
++....+.. .+....+.++..... ++.+. ....+|||.|+.-.--++..++++.. +....+|--.+...-
T Consensus 515 ~l~Qvf~ri~~~si~~~~D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~---i~F~~i~EYssk~~v 591 (698)
T KOG2340|consen 515 PLCQVFQRIEVKSIIETPDARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEE---ISFVMINEYSSKSKV 591 (698)
T ss_pred hhhhhhhheeccCcccCchHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhh---cchHHHhhhhhHhhh
Confidence 111111111 111122334433333 22222 24568999999999999999997654 455555555555555
Q ss_pred HHHHHHHhcCCceEEEecCCcc--ccCCCCCCCEEEEccCCCChh---hhHHhhhhcccCCC----CccEEEEeechhHH
Q 010196 375 SKTLKAFREGKIQVLVSSDAMT--RGMDVEGVNNVVNYDKPAYIK---TYIHRAGRTARAGQ----LGRCFTLLHKDEVK 445 (515)
Q Consensus 375 ~~~l~~f~~g~~~vLv~T~~~~--~GiDi~~v~~VI~~~~p~s~~---~~~Qr~GR~gR~g~----~g~~~~~~~~~d~~ 445 (515)
..+-+.|-.|...+|+-|.-+- +-.++.+|.-||.|.+|.++. .++.+++|+.-.|+ .-.|.+++++.|.-
T Consensus 592 sRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i 671 (698)
T KOG2340|consen 592 SRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRI 671 (698)
T ss_pred hHHHHHHHhcCceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhH
Confidence 6677889999999999997654 678999999999999999876 45677777654442 25788888998877
Q ss_pred HHHHHHH
Q 010196 446 RFKKLLQ 452 (515)
Q Consensus 446 ~~~~~~~ 452 (515)
.++.+..
T Consensus 672 ~Le~ivG 678 (698)
T KOG2340|consen 672 RLENIVG 678 (698)
T ss_pred HHHHhhh
Confidence 7766643
No 169
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.07 E-value=1.9e-09 Score=98.22 Aligned_cols=131 Identities=24% Similarity=0.270 Sum_probs=95.0
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
.|+ .|++.|.-+.-.+ .+.-|++..||-|||++..+|+.-....+ ..|-|++.+..||..-++++..+.
T Consensus 74 ~g~-~p~~vQll~~l~L------~~G~laEm~TGEGKTli~~l~a~~~AL~G----~~V~vvT~NdyLA~RD~~~~~~~y 142 (266)
T PF07517_consen 74 LGL-RPYDVQLLGALAL------HKGRLAEMKTGEGKTLIAALPAALNALQG----KGVHVVTSNDYLAKRDAEEMRPFY 142 (266)
T ss_dssp TS-----HHHHHHHHHH------HTTSEEEESTTSHHHHHHHHHHHHHHTTS----S-EEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-cccHHHHhhhhhc------ccceeEEecCCCCcHHHHHHHHHHHHHhc----CCcEEEeccHHHhhccHHHHHHHH
Confidence 565 7999998886554 23449999999999999988887666553 379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHH-HHHhcCcC----C-CCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLM-DHINATRG----F-TLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~-~~l~~~~~----~-~~~~~~ 199 (515)
..+|++++...++.+.......+ .++|+++|...|. ++++..-. . ....++
T Consensus 143 ~~LGlsv~~~~~~~~~~~r~~~Y-----------------------~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~ 199 (266)
T PF07517_consen 143 EFLGLSVGIITSDMSSEERREAY-----------------------AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFD 199 (266)
T ss_dssp HHTT--EEEEETTTEHHHHHHHH-----------------------HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSS
T ss_pred HHhhhccccCccccCHHHHHHHH-----------------------hCcccccccchhhHHHHHHHHhhccchhccCCCC
Confidence 99999999999998765443222 2489999998874 34433111 1 246789
Q ss_pred EEEEcchhHHH
Q 010196 200 YLVVDETDRLL 210 (515)
Q Consensus 200 ~vViDEah~l~ 210 (515)
++||||+|.++
T Consensus 200 ~~ivDEvDs~L 210 (266)
T PF07517_consen 200 FAIVDEVDSIL 210 (266)
T ss_dssp EEEECTHHHHT
T ss_pred EEEEeccceEE
Confidence 99999999975
No 170
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.05 E-value=1.8e-09 Score=109.03 Aligned_cols=113 Identities=20% Similarity=0.324 Sum_probs=87.4
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCC----CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEE
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGE----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV 407 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~----~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~V 407 (515)
.+-++||.+-....-.|...|..... ....+...|+.....+..++.+...+|..+++++|.+++..+-+.++..|
T Consensus 643 ~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~v 722 (1282)
T KOG0921|consen 643 DGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYV 722 (1282)
T ss_pred ccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEeeeecceeEE
Confidence 45688999998888888887754321 12467778888888888888888889999999999999999888887777
Q ss_pred EEccC------------------CCChhhhHHhhhhcccCCCCccEEEEeechhHH
Q 010196 408 VNYDK------------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (515)
Q Consensus 408 I~~~~------------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~ 445 (515)
|..+. ..+.....||.||+||. ++|.|+..++..-..
T Consensus 723 id~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grv-R~G~~f~lcs~arF~ 777 (1282)
T KOG0921|consen 723 IDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRV-RPGFCFHLCSRARFE 777 (1282)
T ss_pred EeeeeeeeeeeccccceeeeeeecccccchHhhcccCcee-cccccccccHHHHHH
Confidence 65432 23456789999999998 689999888765443
No 171
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.00 E-value=1.4e-08 Score=101.17 Aligned_cols=114 Identities=18% Similarity=0.216 Sum_probs=93.0
Q ss_pred CeEEEEcCChhhHHHHHHHHhhcC---C------------CceeEEEccCccCHHHHHHHHHHHhcCC-c--eEEEecCC
Q 010196 333 EKCIVFTSSVESTHRLCTLLNHFG---E------------LRIKIKEYSGLQRQSVRSKTLKAFREGK-I--QVLVSSDA 394 (515)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~---~------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~-~--~vLv~T~~ 394 (515)
.++|||.........+.+.|...- . .+.....+.|..+..+|++.++.|++.- + -++++|.+
T Consensus 720 ~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstra 799 (1387)
T KOG1016|consen 720 EKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRA 799 (1387)
T ss_pred ceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhcc
Confidence 588999999888888888885421 0 1234567889999999999999998642 2 45788999
Q ss_pred ccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHH
Q 010196 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 446 (515)
..-|||+-..+.+|+||.-|++.--.|.+-|+-|.|+..-|++|----|...
T Consensus 800 g~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ~KpcfvYRlVmD~~l 851 (1387)
T KOG1016|consen 800 GSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQQKPCFVYRLVMDNSL 851 (1387)
T ss_pred ccccceeeccceEEEEEeecCccccchhhhhhhhhcCcCceeEEeehhhhhh
Confidence 9999999999999999999999999999999999999998988866555433
No 172
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.96 E-value=1.3e-07 Score=93.77 Aligned_cols=107 Identities=19% Similarity=0.208 Sum_probs=70.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCC----ceeEEEccCccCHHHHHHHHHHHh----cCCceEEEe--cCCccccCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGEL----RIKIKEYSGLQRQSVRSKTLKAFR----EGKIQVLVS--SDAMTRGMDV 401 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~----~~~v~~~~~~~~~~~r~~~l~~f~----~g~~~vLv~--T~~~~~GiDi 401 (515)
++.+++|++|.+....+.+...+.|-. +.+-.++-..-+ -+.+++.|. +|.-.+|+| -.-+++||||
T Consensus 629 PgGvV~FfPSy~yL~~v~k~w~~~gil~ri~~kK~vF~E~k~~---~~dvl~~Ya~a~~~g~GaiLlaVVGGKlSEGINF 705 (821)
T KOG1133|consen 629 PGGVVCFFPSYAYLGQVRKRWEQNGILARIVGKKKVFYEPKDT---VEDVLEGYAEAAERGRGAILLAVVGGKLSEGINF 705 (821)
T ss_pred CCcEEEEeccHHHHHHHHHHHHhcchHHHhhccchhhccCccc---HHHHHHHHHHHhhcCCCeEEEEEecccccccccc
Confidence 488999999999999998888765421 112222322222 345666665 344456644 4678999999
Q ss_pred CC--CCEEEEccCCCC--------------------------------hhhhHHhhhhcccCCCCccEEEEeec
Q 010196 402 EG--VNNVVNYDKPAY--------------------------------IKTYIHRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 402 ~~--v~~VI~~~~p~s--------------------------------~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
.+ ++.|+..++|.. +...-|-+|||-|--++-.++++++.
T Consensus 706 ~D~LgRaVvvVGlPyPN~~s~EL~er~k~l~~k~~~~gagke~yEnlCMkAVNQsIGRAIRH~~DYA~i~LlD~ 779 (821)
T KOG1133|consen 706 SDDLGRAVVVVGLPYPNIQSVELQERMKHLDGKLPTPGAGKELYENLCMKAVNQSIGRAIRHRKDYASIYLLDK 779 (821)
T ss_pred ccccccEEEEeecCCCCCCCHHHHHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHHhhhccceeEEEehh
Confidence 87 788998888732 01234999999998766666666653
No 173
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.82 E-value=6.8e-10 Score=114.18 Aligned_cols=131 Identities=21% Similarity=0.290 Sum_probs=98.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.+.|.|.+.+.... -...++++-+|||+|||.+|-+.++..+...+ +.+++|++|..+|+..-.+.++.....-|
T Consensus 927 ~fn~~q~~if~~~y---~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p--~~kvvyIap~kalvker~~Dw~~r~~~~g 1001 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLY---HTDLNFLLGAPTGSGKTVVAELAIFRALSYYP--GSKVVYIAPDKALVKERSDDWSKRDELPG 1001 (1230)
T ss_pred ccCCccceEEEEEe---ecchhhhhcCCccCcchhHHHHHHHHHhccCC--CccEEEEcCCchhhcccccchhhhcccCC
Confidence 45667766643322 13578999999999999999999888877754 56899999999999888777776554448
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC-CCCcceEEEEcchhH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDR 208 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~ 208 (515)
+++.-+.|+...+... ...++++|+||++.-...+++... -+.+++.+|+||.|+
T Consensus 1002 ~k~ie~tgd~~pd~~~------------------------v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hl 1057 (1230)
T KOG0952|consen 1002 IKVIELTGDVTPDVKA------------------------VREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHL 1057 (1230)
T ss_pred ceeEeccCccCCChhh------------------------eecCceEEcccccccCccccccchhhhccccceeeccccc
Confidence 8899988887654221 134699999999987776654332 367889999999997
Q ss_pred H
Q 010196 209 L 209 (515)
Q Consensus 209 l 209 (515)
+
T Consensus 1058 l 1058 (1230)
T KOG0952|consen 1058 L 1058 (1230)
T ss_pred c
Confidence 5
No 174
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.64 E-value=1.9e-07 Score=98.53 Aligned_cols=72 Identities=19% Similarity=0.201 Sum_probs=54.6
Q ss_pred CceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccC-----CCC--c--c-EEEEeechhHHHHHHHHHHh
Q 010196 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA-----GQL--G--R-CFTLLHKDEVKRFKKLLQKA 454 (515)
Q Consensus 385 ~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~-----g~~--g--~-~~~~~~~~d~~~~~~~~~~~ 454 (515)
..+.|++.+++.+|-|-|++-++..+.-..|...-.|.+||..|. |.+ + . -.++++.+..+....|.++.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~~vnq~G~R~~~~~~~LTvianesy~dFa~~LQ~EI 580 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRLPVDENGHRVSQEEFRLNYLIDYDEKDFASKLVGEI 580 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceeccccccCccccCccEEEEEEeCccHHHHHHHHHHHH
Confidence 578899999999999999999999898888888999999999994 332 2 1 23444555556666666665
Q ss_pred cC
Q 010196 455 DN 456 (515)
Q Consensus 455 ~~ 456 (515)
+.
T Consensus 581 ~~ 582 (986)
T PRK15483 581 NS 582 (986)
T ss_pred Hh
Confidence 43
No 175
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=98.64 E-value=6.7e-08 Score=83.10 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC--CccccCCCCC--CC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD--AMTRGMDVEG--VN 405 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~--~~~~GiDi~~--v~ 405 (515)
.++++|||++|....+.+.+.+..... .++.+..- ....+..+++.|++++..||+++. .+++|+|+|+ ++
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchhh
Confidence 458999999999999999999876431 12233322 245678999999999999999998 9999999996 77
Q ss_pred EEEEccCCCC-h-----------------------------hhhHHhhhhcccCCCCccEEEEeec
Q 010196 406 NVVNYDKPAY-I-----------------------------KTYIHRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 406 ~VI~~~~p~s-~-----------------------------~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
.||...+|.. + ....|.+||+-|...+--+++++++
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD~ 149 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLDS 149 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEESG
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEcC
Confidence 8999988732 1 1234999999998776444444443
No 176
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.59 E-value=8e-08 Score=88.37 Aligned_cols=68 Identities=26% Similarity=0.314 Sum_probs=48.7
Q ss_pred cchhhHHHHHHHhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHhh-----hcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 51 LFPVQVAVWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLS-----NRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~-~ii~a~TGsGKT~~~~~~~~~~l~-----~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
+.+.|.+|+..++. ... .+|+||+|||||.+... ++..+. .....+.++|+++|+..-++++.+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~----~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALS----SNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCT----SSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHc----CCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 67899999887754 555 89999999999975443 444441 1124566899999999999999999888
No 177
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=98.56 E-value=2.2e-07 Score=94.68 Aligned_cols=162 Identities=16% Similarity=0.128 Sum_probs=103.5
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---------------------------
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--------------------------- 98 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--------------------------- 98 (515)
|-| +|++.|...+..++..+....+.++..|||+|||++.+...+.+.....
T Consensus 18 fP~-qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~ 96 (945)
T KOG1132|consen 18 FPF-QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEK 96 (945)
T ss_pred ccC-CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCc
Confidence 444 7999999999999988888899999999999999998776665542211
Q ss_pred -----------cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCc---------------hHHHHHHHhccC
Q 010196 99 -----------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSS---------------IADEISELIKRP 152 (515)
Q Consensus 99 -----------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~---------------~~~~~~~~~~~~ 152 (515)
...++++|-+-|.+-..|+.+++++.... .+..++-+... ............
T Consensus 97 s~e~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~ 174 (945)
T KOG1132|consen 97 SEEAGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSR 174 (945)
T ss_pred hhhhcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhcccc
Confidence 01356788888988899999999987654 22222211111 011111111110
Q ss_pred cccc----------------------cc------cCCchhHHHhhccCCcEEEeCChHHHHHHhcCc-CCCCCcceEEEE
Q 010196 153 KLEA----------------------GI------CYDPEDVLQELQSAVDILVATPGRLMDHINATR-GFTLEHLCYLVV 203 (515)
Q Consensus 153 ~~~~----------------------~~------~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~-~~~~~~~~~vVi 203 (515)
.+.. -+ ..=+....+.+.+.++|++|-+..|++-..+.. .+++. =.+||+
T Consensus 175 ~C~f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lk-nsIVIf 253 (945)
T KOG1132|consen 175 SCHFYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLK-NSIVIF 253 (945)
T ss_pred cccccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhcccccccc-ccEEEE
Confidence 0000 00 000344557788889999999999887765522 23332 248999
Q ss_pred cchhHHHH
Q 010196 204 DETDRLLR 211 (515)
Q Consensus 204 DEah~l~~ 211 (515)
||||.|-+
T Consensus 254 DEAHNiEd 261 (945)
T KOG1132|consen 254 DEAHNIED 261 (945)
T ss_pred eccccHHH
Confidence 99998743
No 178
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.37 E-value=9.1e-07 Score=91.29 Aligned_cols=101 Identities=20% Similarity=0.237 Sum_probs=86.3
Q ss_pred eEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC-c-eEEEecCCccccCCCCCCCEEEEcc
Q 010196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK-I-QVLVSSDAMTRGMDVEGVNNVVNYD 411 (515)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~-~-~vLv~T~~~~~GiDi~~v~~VI~~~ 411 (515)
+++||+.-..-+..+...|...+ +....+.|.|+...|...+..|..+. . -.+++..+.+.|+++..+.+|+..|
T Consensus 541 kiiifsq~~~~l~l~~~~l~~~~---~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slkag~~glnlt~a~~v~~~d 617 (674)
T KOG1001|consen 541 KIVIFSQLIWGLALVCLRLFFKG---FVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKAGKVGLNLTAASHVLLMD 617 (674)
T ss_pred ceeeehhHHHHHHHhhhhhhhcc---cccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHHhhhhhchhhhhHHHhhc
Confidence 78888888888888877776444 78889999999999999999999543 2 3467889999999999999999999
Q ss_pred CCCChhhhHHhhhhcccCCCCccEEE
Q 010196 412 KPAYIKTYIHRAGRTARAGQLGRCFT 437 (515)
Q Consensus 412 ~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (515)
+.+++..--|.+-|+.|.|+.-.+.+
T Consensus 618 ~~wnp~~eeQaidR~hrigq~k~v~v 643 (674)
T KOG1001|consen 618 PWWNPAVEEQAIDRAHRIGQTKPVKV 643 (674)
T ss_pred hhcChHHHHHHHHHHHHhcccceeee
Confidence 99999999999999999998855544
No 179
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.26 E-value=2.2e-06 Score=84.80 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=67.1
Q ss_pred HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
.+...++.++...|..|+.+++. ..-.||++|+|+|||.+....+.+.+.. ....+|+++|+.--++|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~----rplsLIQGPPGTGKTvtsa~IVyhl~~~---~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLARQ---HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHc----CCceeeecCCCCCceehhHHHHHHHHHh---cCCceEEEcccchhHHHHHHHH
Confidence 45557888999999999888764 6678999999999999876644444443 3447999999999999999999
Q ss_pred HHhccccCcEEEEeecC
Q 010196 122 AAIAPAVGLSVGLAVGQ 138 (515)
Q Consensus 122 ~~~~~~~~~~v~~~~g~ 138 (515)
.+. +++|.-+...
T Consensus 475 h~t----gLKVvRl~ak 487 (935)
T KOG1802|consen 475 HKT----GLKVVRLCAK 487 (935)
T ss_pred Hhc----CceEeeeehh
Confidence 886 5666655443
No 180
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.24 E-value=8.5e-06 Score=86.20 Aligned_cols=52 Identities=15% Similarity=0.175 Sum_probs=39.4
Q ss_pred CCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhh
Q 010196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQL 224 (515)
Q Consensus 172 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~ 224 (515)
...|+++||..+..-+.. +.+++.++..|||||||++.+..-...+-.++..
T Consensus 7 ~ggi~~~T~rIl~~DlL~-~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~ 58 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLT-GIIPPELITGILVLRADRIIESSQEAFILRLYRQ 58 (814)
T ss_pred cCCEEEEechhhHhHHhc-CCCCHHHccEEEEeecccccccccHHHHHHHHHH
Confidence 348999999999877766 4578899999999999998665544545444443
No 181
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.21 E-value=1.8e-06 Score=75.61 Aligned_cols=59 Identities=14% Similarity=0.172 Sum_probs=40.7
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
...++.|..++..+. ...-+++.+|.|||||+.++..+++.+.++.. .+++|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~----~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~--~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALL----NNDLVIVNGPAGTGKTFLALAAALELVKEGEY--DKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHH----H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS---SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHH----hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC--cEEEEEecCCCC
Confidence 356889999988876 36679999999999999999999998887433 367888787653
No 182
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.15 E-value=7.7e-06 Score=72.35 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=44.7
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (515)
++++-|.+|+..++.. ..+-.++.++.|+|||.+ +..+...+.. .+.++++++||..-+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~--~~~~~~l~G~aGtGKT~~-l~~~~~~~~~---~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTS--GDRVSVLQGPAGTGKTTL-LKALAEALEA---AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHC--TCSEEEEEESTTSTHHHH-HHHHHHHHHH---TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc--CCeEEEEEECCCCCHHHH-HHHHHHHHHh---CCCeEEEECCcHHHHHHHHHh
Confidence 3788999999888641 234577889999999985 3445555544 246899999999887775555
No 183
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=98.13 E-value=1.5e-05 Score=70.42 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=57.8
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
++ -+|+.|.+...+++.. ..|.|.+.+.-+|.|||.+ ++|++..+...+ ..-+.+++|. +|..|....++..+.
T Consensus 21 ~i-liR~~Q~~ia~~mi~~-~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg--~~LvrviVpk-~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 21 NI-LIRPVQVEIAREMISP-PSGKNSVMQLNMGEGKTSV-IVPMLALALADG--SRLVRVIVPK-ALLEQMRQMLRSRLG 94 (229)
T ss_pred Cc-eeeHHHHHHHHHHhCC-CCCCCeEeeecccCCccch-HHHHHHHHHcCC--CcEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 54 6999999999988864 4679999999999999986 677777666533 2356677775 899999998886543
No 184
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=98.10 E-value=2.4e-05 Score=75.50 Aligned_cols=79 Identities=14% Similarity=0.095 Sum_probs=62.0
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
|.|...+|-|.+-+.++-..+-.+.+.++.+|+|+|||.+.+..++.+....+....+.++..-|..-++....+++.+
T Consensus 12 FPY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRTvpEieK~l~El~~l 90 (755)
T KOG1131|consen 12 FPYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRTVPEIEKALEELKRL 90 (755)
T ss_pred cCCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCcchHHHHHHHHHHHH
Confidence 5677889999999888877777889999999999999998777777766665555567888877766666666666554
No 185
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=98.07 E-value=0.0006 Score=70.20 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=54.6
Q ss_pred CceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccC--CCCc-----------cEEEEeechhHHHHHHHH
Q 010196 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA--GQLG-----------RCFTLLHKDEVKRFKKLL 451 (515)
Q Consensus 385 ~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~--g~~g-----------~~~~~~~~~d~~~~~~~~ 451 (515)
..+.|.+-.++-+|-|-|+|=.++-+....|..+=+|.+||..|- .+.| .-.++++.++......+.
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLRLaVNe~G~RV~~~~~~~n~L~vlv~~sek~Fv~~Lq 562 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLRLAVNENGERVTKDFDFPNELTVLVNESEKDFVKALQ 562 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhccceeeeeccccceecccccccceEEEEecccHHHHHHHHH
Confidence 478999999999999999999999999999999999999999994 2222 223455666666555555
Q ss_pred HHhc
Q 010196 452 QKAD 455 (515)
Q Consensus 452 ~~~~ 455 (515)
+.+.
T Consensus 563 kEI~ 566 (985)
T COG3587 563 KEIN 566 (985)
T ss_pred HHHH
Confidence 5543
No 186
>PF13245 AAA_19: Part of AAA domain
Probab=98.06 E-value=2.1e-05 Score=57.29 Aligned_cols=53 Identities=32% Similarity=0.454 Sum_probs=39.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
+.-++|.+|+|||||.+.+-.+.+.+......+.++++++|++..++++.+.+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 34456699999999987666566555432122558999999999999888887
No 187
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.05 E-value=6.9e-06 Score=80.93 Aligned_cols=67 Identities=25% Similarity=0.267 Sum_probs=51.9
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
..+.+-|++|+...+. ...-.++.+|+|+|||.+....+.+.+.++ .++|+++||..-++.+.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~---~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~----k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN---NKDLLIIHGPPGTGKTRTLVEIISQLVKQK----KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhc---cCCceEeeCCCCCCceeeHHHHHHHHHHcC----CeEEEEcCchHHHHHHHHHhc
Confidence 3688899999876654 225588999999999998776666655554 389999999999988888644
No 188
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.98 E-value=2.4e-05 Score=76.27 Aligned_cols=95 Identities=17% Similarity=0.174 Sum_probs=61.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhc
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIK 150 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 150 (515)
-++|.+..|||||+.++-.+. .+.. ...+..+++++++.+|...+.+.+..-...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~-~l~~-~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~----------------------- 57 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAK-ELQN-SEEGKKVLYLCGNHPLRNKLREQLAKKYNP----------------------- 57 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHH-Hhhc-cccCCceEEEEecchHHHHHHHHHhhhccc-----------------------
Confidence 478999999999997554333 3311 234557999999999998888877654200
Q ss_pred cCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHH
Q 010196 151 RPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (515)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~ 211 (515)
......+..+..+.+.+.. .......+++|||||||++..
T Consensus 58 --------------------~~~~~~~~~~~~~i~~~~~-~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --------------------KLKKSDFRKPTSFINNYSE-SDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --------------------chhhhhhhhhHHHHhhccc-ccccCCcCCEEEEehhHhhhh
Confidence 0002234445455443331 123356789999999999877
No 189
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.94 E-value=5.3e-05 Score=79.15 Aligned_cols=68 Identities=24% Similarity=0.217 Sum_probs=52.4
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.+.+.|.+|+..++. ....++|.+|+|+|||.+....+.+.+.. +.++|+++||..-++++.+.+...
T Consensus 157 ~ln~~Q~~Av~~~l~---~~~~~lI~GpPGTGKT~t~~~ii~~~~~~----g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALS---SKDLFLIHGPPGTGKTRTLVELIRQLVKR----GLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhc---CCCeEEEEcCCCCCHHHHHHHHHHHHHHc----CCCEEEEcCcHHHHHHHHHHHHhC
Confidence 578999999877643 23678899999999998765544444433 338999999999999999888764
No 190
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.90 E-value=4.5e-05 Score=70.03 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=85.2
Q ss_pred CcchhhHHHHHHHhCCCC------CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGL------FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~------~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
.++..|.+++-.++.... .+..+++-..||.||--...-.|++.+.++. .+.|+++.+..|..+..+.++.
T Consensus 37 ~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr---~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 37 LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR---KRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC---CceEEEECChhhhhHHHHHHHH
Confidence 488999998765543221 2466899999999999987777887777642 3699999999999999999998
Q ss_pred hccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC--C-------
Q 010196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF--T------- 194 (515)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~--~------- 194 (515)
+... .+.+..+..-. .. + ...-...|+.+|+..|.......... .
T Consensus 114 IG~~-~i~v~~l~~~~-----------~~-----------~---~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W 167 (303)
T PF13872_consen 114 IGAD-NIPVHPLNKFK-----------YG-----------D---IIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDW 167 (303)
T ss_pred hCCC-cccceechhhc-----------cC-----------c---CCCCCCCccchhHHHHHhHHhccCCccchHHHHHHH
Confidence 7543 23332221100 00 0 00112368999988876654321110 0
Q ss_pred C-Ccc-eEEEEcchhHHHH
Q 010196 195 L-EHL-CYLVVDETDRLLR 211 (515)
Q Consensus 195 ~-~~~-~~vViDEah~l~~ 211 (515)
+ .++ .+||+||||.+-+
T Consensus 168 ~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 168 CGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HhcCCCceEEeccchhcCC
Confidence 0 122 4899999998743
No 191
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=97.82 E-value=9.7e-05 Score=61.14 Aligned_cols=73 Identities=18% Similarity=0.245 Sum_probs=52.6
Q ss_pred ccCHHHHHHHHHHHhcCC-ceEEEecCCccccCCCCC--CCEEEEccCCCC-----------------------------
Q 010196 368 LQRQSVRSKTLKAFREGK-IQVLVSSDAMTRGMDVEG--VNNVVNYDKPAY----------------------------- 415 (515)
Q Consensus 368 ~~~~~~r~~~l~~f~~g~-~~vLv~T~~~~~GiDi~~--v~~VI~~~~p~s----------------------------- 415 (515)
+....+..++++.|++.. ..||++|..+++|+|+|+ ++.||...+|..
T Consensus 30 ~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (141)
T smart00492 30 GEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPYPDSPILKARLELLRDKGQIRPFDFVSLP 109 (141)
T ss_pred CCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhCCCCchhHHHHH
Confidence 344446788999998754 379999988999999997 678888887731
Q ss_pred --hhhhHHhhhhcccCCCCccEEEEee
Q 010196 416 --IKTYIHRAGRTARAGQLGRCFTLLH 440 (515)
Q Consensus 416 --~~~~~Qr~GR~gR~g~~g~~~~~~~ 440 (515)
...+.|.+||+-|...+--++++++
T Consensus 110 ~a~~~l~Qa~GR~iR~~~D~g~i~l~D 136 (141)
T smart00492 110 DAMRTLAQCVGRLIRGANDYGVVVIAD 136 (141)
T ss_pred HHHHHHHHHhCccccCcCceEEEEEEe
Confidence 1224588899999876633444443
No 192
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=97.74 E-value=0.00011 Score=60.96 Aligned_cols=68 Identities=16% Similarity=0.196 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCc---eEEEecCC--ccccCCCCC--CCEEEEccCCCC----h-------------------------
Q 010196 373 VRSKTLKAFREGKI---QVLVSSDA--MTRGMDVEG--VNNVVNYDKPAY----I------------------------- 416 (515)
Q Consensus 373 ~r~~~l~~f~~g~~---~vLv~T~~--~~~GiDi~~--v~~VI~~~~p~s----~------------------------- 416 (515)
+..++++.|++... .||+++.- +++|||+|+ ++.||...+|.. +
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRARLEYLDEKGGIRPFDEVYLFD 111 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 45788999987544 68888877 999999997 678998887731 1
Q ss_pred --hhhHHhhhhcccCCCCccEEEEee
Q 010196 417 --KTYIHRAGRTARAGQLGRCFTLLH 440 (515)
Q Consensus 417 --~~~~Qr~GR~gR~g~~g~~~~~~~ 440 (515)
....|.+||+-|...+--++++++
T Consensus 112 a~~~~~Qa~GR~iR~~~D~g~i~l~D 137 (142)
T smart00491 112 AMRALAQAIGRAIRHKNDYGVVVLLD 137 (142)
T ss_pred HHHHHHHHhCccccCccceEEEEEEe
Confidence 124599999999876633455544
No 193
>PRK10536 hypothetical protein; Provisional
Probab=97.74 E-value=6.5e-05 Score=67.79 Aligned_cols=61 Identities=18% Similarity=0.131 Sum_probs=42.0
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
.++...+..|...+..+. .+..+++.+|+|+|||+.+...+++.+..+. -.+++|.=|+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~----~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~--~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIE----SKQLIFATGEAGCGKTWISAAKAAEALIHKD--VDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHh----cCCeEEEECCCCCCHHHHHHHHHHHHHhcCC--eeEEEEeCCCCC
Confidence 344556777877766543 3568899999999999998887777665532 224555557654
No 194
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.69 E-value=0.00012 Score=70.48 Aligned_cols=70 Identities=26% Similarity=0.223 Sum_probs=55.5
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
+++-|.+++.. ...+++|.|+.|||||.+.+.-+...+.....+..++|++++|+..+.++.+.+...+.
T Consensus 1 l~~eQ~~~i~~------~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS------TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS-------SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC------CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46789888654 37789999999999999877777777766655667899999999999999998888654
No 195
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.54 E-value=0.00047 Score=71.36 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=48.0
Q ss_pred chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh-cccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
.++|+.|+...+ ..+-.+|.+++|+|||.+... ++..+.. ......++++++||..=+..+.+.+....
T Consensus 154 ~d~Qk~Av~~a~----~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVAL----TRRISVISGGPGTGKTTTVAK-LLAALIQLADGERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHh----cCCeEEEEeCCCCCHHHHHHH-HHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 589999976543 467899999999999986433 3333332 11233578888999988888877766543
No 196
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.49 E-value=0.00062 Score=70.32 Aligned_cols=67 Identities=19% Similarity=0.167 Sum_probs=46.2
Q ss_pred hhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc-cc-CcccEEEEcccHHHHHHHHHHHHHh
Q 010196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AV-RCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
++|+.|+..++ .++-++|.++.|||||.+..- ++..+... +. ...++++++||-.=+..+.+.+...
T Consensus 148 ~~Qk~A~~~al----~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALAL----KSNFSLITGGPGTGKTTTVAR-LLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHh----hCCeEEEEcCCCCCHHHHHHH-HHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 78988876654 367899999999999986433 33333321 11 1257999999988777777766554
No 197
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.41 E-value=0.0011 Score=69.29 Aligned_cols=152 Identities=17% Similarity=0.191 Sum_probs=88.9
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+.|++.+.. +..+..-|++|+..++. .....+|.+=+|+|||.+... ++..|.. .+.++|+.+=|..=+
T Consensus 658 ~~p~~~~~~----~~~LN~dQr~A~~k~L~---aedy~LI~GMPGTGKTTtI~~-LIkiL~~---~gkkVLLtsyThsAV 726 (1100)
T KOG1805|consen 658 LIPKIKKII----LLRLNNDQRQALLKALA---AEDYALILGMPGTGKTTTISL-LIKILVA---LGKKVLLTSYTHSAV 726 (1100)
T ss_pred cCchhhHHH----HhhcCHHHHHHHHHHHh---ccchheeecCCCCCchhhHHH-HHHHHHH---cCCeEEEEehhhHHH
Confidence 566666642 23688999999877653 456688899999999987544 3333332 233788888887766
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
+.+.-.++.+ ++.+.-+-......+...++... ........+++ ...-+.+.||.+|---+.+ ..|.
T Consensus 727 DNILiKL~~~----~i~~lRLG~~~kih~~v~e~~~~---~~~s~ks~~~l-~~~~~~~~IVa~TClgi~~-----plf~ 793 (1100)
T KOG1805|consen 727 DNILIKLKGF----GIYILRLGSEEKIHPDVEEFTLT---NETSEKSYADL-KKFLDQTSIVACTCLGINH-----PLFV 793 (1100)
T ss_pred HHHHHHHhcc----CcceeecCCccccchHHHHHhcc---cccchhhHHHH-HHHhCCCcEEEEEccCCCc-----hhhh
Confidence 6666665554 44433333333344444333210 00001111222 2334567899998433322 2244
Q ss_pred CCcceEEEEcchhHHH
Q 010196 195 LEHLCYLVVDETDRLL 210 (515)
Q Consensus 195 ~~~~~~vViDEah~l~ 210 (515)
...||++|+|||-.+.
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 5679999999999863
No 198
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=97.37 E-value=0.00065 Score=72.86 Aligned_cols=72 Identities=21% Similarity=0.111 Sum_probs=56.4
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
..+++-|.+|+.+ ....++|.|..|||||.+...-+...+.....+..++|+++-|+.-|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~------~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAA------PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcC------CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4689999999643 25689999999999999866655555544444556899999999999999999988753
No 199
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=97.35 E-value=0.00055 Score=72.50 Aligned_cols=71 Identities=20% Similarity=0.098 Sum_probs=55.2
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
.+++-|.+|+.+. ...++|.|..|||||.+...-+...+.....+..++|+++.|+.-|.++.+.+.....
T Consensus 2 ~Ln~~Q~~av~~~------~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4789999986432 5678999999999999866656655544344456899999999999999998887643
No 200
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.29 E-value=0.0018 Score=68.99 Aligned_cols=67 Identities=18% Similarity=0.162 Sum_probs=46.8
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHH
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~ 118 (515)
..++ .+++.|.+|+..+. .++-+++.++.|+|||.+. -.++..+.... ....+++++||-.-+..+.
T Consensus 319 ~~~~-~l~~~Q~~Ai~~~~----~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 319 KLRK-GLSEEQKQALDTAI----QHKVVILTGGPGTGKTTIT-RAIIELAEELG-GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred hcCC-CCCHHHHHHHHHHH----hCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-CCceEEEEeCchHHHHHHH
Confidence 3565 79999999988764 3678999999999999853 33444444321 1146888899977665443
No 201
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=97.28 E-value=0.00077 Score=72.28 Aligned_cols=71 Identities=17% Similarity=0.098 Sum_probs=55.6
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
.++|-|.+|+.+. ...++|.|..|||||.+...-+...+.....+..++|+|+-|+.-|.++.+.+.++..
T Consensus 9 ~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP------LGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC------CCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 5899999996432 4689999999999999866555555543344556899999999999999999988753
No 202
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0029 Score=61.71 Aligned_cols=61 Identities=23% Similarity=0.208 Sum_probs=33.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc--ccHHHHHHHHHHHHHhccccCcEE
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSV 132 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~v 132 (515)
+..+++.+|||+|||.+..-.+..........+.++.+++ +.|.-+.. +++.++..+++++
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~lgvpv 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIMGIPV 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcCCcce
Confidence 3568899999999999876554433322111233454443 33333332 2555554445443
No 203
>PRK06526 transposase; Provisional
Probab=97.22 E-value=0.0014 Score=60.29 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=35.2
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
..+++..++..+++++.....|....|. ..+.++++.||+|+|||..+...+.+..
T Consensus 68 ~~le~fd~~~~~~~~~~~~~~l~~~~fi-----------------~~~~nlll~Gp~GtGKThLa~al~~~a~ 123 (254)
T PRK06526 68 KSLEEFDFDHQRSLKRDTIAHLGTLDFV-----------------TGKENVVFLGPPGTGKTHLAIGLGIRAC 123 (254)
T ss_pred CChhhccCccCCCcchHHHHHHhcCchh-----------------hcCceEEEEeCCCCchHHHHHHHHHHHH
Confidence 3455555555455666555555444331 2367999999999999987665444444
No 204
>PRK11054 helD DNA helicase IV; Provisional
Probab=97.16 E-value=0.002 Score=67.84 Aligned_cols=82 Identities=18% Similarity=0.087 Sum_probs=60.6
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..+++-|.+|+.. ...+++|.|..|||||.+.+.-+...+..+.....++|+++.|+..|..+.+.+.......
T Consensus 195 ~~L~~~Q~~av~~------~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~~ 268 (684)
T PRK11054 195 SPLNPSQARAVVN------GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGTE 268 (684)
T ss_pred CCCCHHHHHHHhC------CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCCC
Confidence 4699999999532 2457899999999999986665555555544455689999999999999999888765433
Q ss_pred CcEEEEee
Q 010196 129 GLSVGLAV 136 (515)
Q Consensus 129 ~~~v~~~~ 136 (515)
++.+..++
T Consensus 269 ~v~v~TFH 276 (684)
T PRK11054 269 DITARTFH 276 (684)
T ss_pred CcEEEeHH
Confidence 45554443
No 205
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.15 E-value=0.0047 Score=61.38 Aligned_cols=118 Identities=19% Similarity=0.228 Sum_probs=60.6
Q ss_pred EECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh-ccccCcEEEEeecCCchHHHHHHHhccC
Q 010196 74 INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI-APAVGLSVGLAVGQSSIADEISELIKRP 152 (515)
Q Consensus 74 i~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~v~~~~g~~~~~~~~~~~~~~~ 152 (515)
..+.||||||++.+..|++...++ -...|+.|......+.....+-.- ....=.+-.+.+++....-.
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg---yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ik-------- 70 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG---YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIK-------- 70 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc---hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeee--------
Confidence 457999999998777777766554 225777777666555443332210 00000000011111110000
Q ss_pred cccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC--C---CCCcce-EEEEcchhHHHH
Q 010196 153 KLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG--F---TLEHLC-YLVVDETDRLLR 211 (515)
Q Consensus 153 ~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~--~---~~~~~~-~vViDEah~l~~ 211 (515)
.. .....-.....|+.+|.+.|...+.+.+. . ++.+.. +.+-||||++-.
T Consensus 71 ---kv------n~fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~ 126 (812)
T COG3421 71 ---KV------NNFSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNT 126 (812)
T ss_pred ---ee------cccCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhh
Confidence 00 00001224568999999999877755332 2 233444 456799999743
No 206
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=97.13 E-value=5.8e-05 Score=77.32 Aligned_cols=79 Identities=20% Similarity=0.279 Sum_probs=61.8
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhc---CCceEEE
Q 010196 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE---GKIQVLV 390 (515)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~---g~~~vLv 390 (515)
...|+..|...++.. .+.+++||..-....+.+..++...+ ....+.|......|+.++++|+. .....|+
T Consensus 613 ~~~k~~~l~~~~~~l~~~ghrvl~~~q~~~~ldlled~~~~~~----~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfll 688 (696)
T KOG0383|consen 613 ASGKLTLLLKMLKKLKSSGHRVLIFSQMIHMLDLLEDYLTYEG----KYERIDGPITGPERQAAIDRFNAPGSNQFCFLL 688 (696)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhHHHHhccC----cceeccCCccchhhhhhccccCCCCccceEEEe
Confidence 345556666666543 57899999999999999988887543 67789999999999999999993 3467789
Q ss_pred ecCCcccc
Q 010196 391 SSDAMTRG 398 (515)
Q Consensus 391 ~T~~~~~G 398 (515)
+|.+.+.|
T Consensus 689 stra~g~g 696 (696)
T KOG0383|consen 689 STRAGGLG 696 (696)
T ss_pred ecccccCC
Confidence 99987765
No 207
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.13 E-value=0.0056 Score=65.52 Aligned_cols=61 Identities=13% Similarity=0.056 Sum_probs=43.7
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
.+++-|.+|+..++. .++-++|.++.|+|||... -.+.+.+.. .+.++++++||-.-+..+
T Consensus 352 ~Ls~~Q~~Av~~i~~---s~~~~il~G~aGTGKTtll-~~i~~~~~~---~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 352 RLSEEQYEAVRHVTG---SGDIAVVVGRAGTGKSTML-KAAREAWEA---AGYRVIGAALSGKAAEGL 412 (744)
T ss_pred CCCHHHHHHHHHHhc---CCCEEEEEecCCCCHHHHH-HHHHHHHHh---CCCeEEEEeCcHHHHHHH
Confidence 689999999887753 2456889999999999753 334444433 245799999996655443
No 208
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.09 E-value=0.0078 Score=49.32 Aligned_cols=21 Identities=43% Similarity=0.504 Sum_probs=14.0
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~ 89 (515)
++.+++.||+|+|||......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~ 24 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRL 24 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHH
Confidence 567899999999999864443
No 209
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.04 E-value=0.0054 Score=66.75 Aligned_cols=63 Identities=11% Similarity=-0.081 Sum_probs=44.7
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
.|+ .+++-|.+|+..++. .+.-+++.++.|+|||.+ +-.+.+.+.. .+.+++.++||-.-+..
T Consensus 343 ~g~-~Ls~eQr~Av~~il~---s~~v~vv~G~AGTGKTT~-l~~~~~~~e~---~G~~V~~~ApTGkAA~~ 405 (988)
T PRK13889 343 RGL-VLSGEQADALAHVTD---GRDLGVVVGYAGTGKSAM-LGVAREAWEA---AGYEVRGAALSGIAAEN 405 (988)
T ss_pred cCC-CCCHHHHHHHHHHhc---CCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEecCcHHHHHH
Confidence 455 699999999887753 233478999999999985 4444444433 35579999999665443
No 210
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=97.03 E-value=0.0022 Score=68.54 Aligned_cols=70 Identities=21% Similarity=0.123 Sum_probs=54.3
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
+++-|.+++.+ ...+++|.|..|||||.+.+.-+...+...+....++++|+.|+.-+.++.+.+.+.+.
T Consensus 2 Ln~~Q~~av~~------~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY------VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC------CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 68899988543 25689999999999999876666666654334456799999999999999998887643
No 211
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.02 E-value=0.0017 Score=59.56 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCceEEEecCCccccCCCCC--------CCEEEEccCCCChhhhHHhhhhcccCCCC-ccEEEEeec---h
Q 010196 375 SKTLKAFREGKIQVLVSSDAMTRGMDVEG--------VNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLLHK---D 442 (515)
Q Consensus 375 ~~~l~~f~~g~~~vLv~T~~~~~GiDi~~--------v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~~~---~ 442 (515)
....+.|.+|+.+|+|.+++.+.|+.+.. -++-|...+|||.+..+|..||++|.|+. .-.+.++.. .
T Consensus 51 ~~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t~~~g 130 (278)
T PF13871_consen 51 IAEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVTDLPG 130 (278)
T ss_pred HHHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeecCCHH
Confidence 35677999999999999999999998863 23566788999999999999999999986 334444432 3
Q ss_pred hHHHHHHHHHH
Q 010196 443 EVKRFKKLLQK 453 (515)
Q Consensus 443 d~~~~~~~~~~ 453 (515)
|......+.+.
T Consensus 131 E~Rfas~va~r 141 (278)
T PF13871_consen 131 ERRFASTVARR 141 (278)
T ss_pred HHHHHHHHHHH
Confidence 44434444333
No 212
>PRK08181 transposase; Validated
Probab=97.02 E-value=0.004 Score=57.63 Aligned_cols=45 Identities=27% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
.++++++.||+|+|||..+...+.+.+.. +..++++ +..+|..++
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~----g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN----GWRVLFT-RTTDLVQKL 149 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc----CCceeee-eHHHHHHHH
Confidence 47889999999999997655444333332 2345444 445665554
No 213
>PRK04296 thymidine kinase; Provisional
Probab=97.01 E-value=0.0014 Score=57.78 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=24.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
|.-.++.+|+|+|||..++-.+...... +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~----g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER----GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc----CCeEEEEec
Confidence 4457889999999998655444333322 346787766
No 214
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.97 E-value=0.0023 Score=58.01 Aligned_cols=86 Identities=21% Similarity=0.268 Sum_probs=60.6
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCC-chHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQS-SIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~ 178 (515)
..|.+|||+.+---|.++.+.++.+-.. +..|+.+.+.. ...++...+. ....+|.||
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k-~~~v~KLFaKH~Kl~eqv~~L~--------------------~~~~~i~vG 183 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGK-DCKVAKLFAKHIKLEEQVKLLK--------------------KTRVHIAVG 183 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccC-CchHHHHHHhhccHHHHHHHHH--------------------hCCceEEEe
Confidence 4678999999876677888888776321 23444444443 3444433221 135799999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
||+|+..++.. ..+.++++.+||+|--|
T Consensus 184 TP~Rl~kLle~-~~L~l~~l~~ivlD~s~ 211 (252)
T PF14617_consen 184 TPGRLSKLLEN-GALSLSNLKRIVLDWSY 211 (252)
T ss_pred ChHHHHHHHHc-CCCCcccCeEEEEcCCc
Confidence 99999999976 67889999999999866
No 215
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=96.96 E-value=0.0017 Score=69.72 Aligned_cols=98 Identities=16% Similarity=0.079 Sum_probs=66.3
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhc--------------ccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEE
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--------------AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVG 133 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~--------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~ 133 (515)
.|+++++.-..|.|||..-+...+..+... ......+|||+|. ++..||..++.+.++.. ++|.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 467889999999999998665444332111 1123468999998 88899999999998864 7887
Q ss_pred EeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHh
Q 010196 134 LAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHIN 188 (515)
Q Consensus 134 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~ 188 (515)
...|-........ .---.+|||++|++.|.+-+.
T Consensus 451 ~Y~Girk~~~~~~---------------------~el~~yDIVlTtYdiLr~El~ 484 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSP---------------------FELLQYDIVLTTYDILRNELY 484 (1394)
T ss_pred EEechhhhcccCc---------------------hhhhccCEEEeehHHHHhHhh
Confidence 7777543211100 001246999999999866553
No 216
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=96.87 E-value=0.0024 Score=68.71 Aligned_cols=72 Identities=25% Similarity=0.245 Sum_probs=55.6
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
..++|-|.+|+.+. ..+++|.|..|||||.+...-+...+........++|+++-|+.-+..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~~------~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT------EGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC------CCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35899999996432 5689999999999999866655555544334445899999999999999888887743
No 217
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.87 E-value=0.0037 Score=57.15 Aligned_cols=36 Identities=25% Similarity=0.099 Sum_probs=23.6
Q ss_pred hhHHHHHHHhCCCC--CCCCEEEECCCCchhHHHhHHH
Q 010196 54 VQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 54 ~Q~~a~~~~~~~~~--~~~~~ii~a~TGsGKT~~~~~~ 89 (515)
.|..++..+.+.+. ...+.++.+|.|+|||-++++.
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalaf 77 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAF 77 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHH
Confidence 45544444333332 2467999999999999986643
No 218
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.84 E-value=0.014 Score=64.08 Aligned_cols=75 Identities=13% Similarity=-0.025 Sum_probs=50.7
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
.++..++.....++ .+++-|.+|+..+. ..++-+++.++.|+|||.+ +-++.+.+.. .+.+++.++||-.=+
T Consensus 367 v~~~~l~a~~~~~~-~Ls~eQ~~Av~~i~---~~~r~~~v~G~AGTGKTt~-l~~~~~~~e~---~G~~V~g~ApTgkAA 438 (1102)
T PRK13826 367 VREAVLAATFARHA-RLSDEQKTAIEHVA---GPARIAAVVGRAGAGKTTM-MKAAREAWEA---AGYRVVGGALAGKAA 438 (1102)
T ss_pred CCHHHHHHHHhcCC-CCCHHHHHHHHHHh---ccCCeEEEEeCCCCCHHHH-HHHHHHHHHH---cCCeEEEEcCcHHHH
Confidence 44555544444454 79999999988764 2356688999999999985 3445544443 355789999996655
Q ss_pred HHH
Q 010196 115 LQV 117 (515)
Q Consensus 115 ~q~ 117 (515)
..+
T Consensus 439 ~~L 441 (1102)
T PRK13826 439 EGL 441 (1102)
T ss_pred HHH
Confidence 443
No 219
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.78 E-value=0.0065 Score=55.96 Aligned_cols=51 Identities=22% Similarity=0.225 Sum_probs=35.9
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
.++.++++.||+|+|||..+.....+.+ .. + .-++++++.+|+.++...+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~Ai~~~l~-~~---g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAIAIGNELL-KA---G-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHHHHHHHHH-Hc---C-CeEEEEEHHHHHHHHHHHHh
Confidence 3688999999999999997665555444 32 2 34556677788777666554
No 220
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.62 E-value=0.013 Score=48.87 Aligned_cols=19 Identities=32% Similarity=0.538 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
++.+++.+|+|+|||....
T Consensus 19 ~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 6789999999999997533
No 221
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.62 E-value=0.0052 Score=60.17 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=40.5
Q ss_pred cchhhHHHHHHHhCCC--CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 51 LFPVQVAVWQETIGPG--LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~--~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+.+-|++++..++..+ ..+.++++.++-|+|||+.+- .+...+.. .+..+++++||-.=
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~-~i~~~~~~---~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK-AIIDYLRS---RGKKVLVTAPTGIA 62 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH-HHHHHhcc---ccceEEEecchHHH
Confidence 6778888877775443 457889999999999998532 23333332 23468888998443
No 222
>PRK06921 hypothetical protein; Provisional
Probab=96.56 E-value=0.017 Score=53.69 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=27.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
.+.++++.+++|+|||..+.. +...+... .+..++++. ..++..++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~a-ia~~l~~~--~g~~v~y~~-~~~l~~~l 161 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTA-AANELMRK--KGVPVLYFP-FVEGFGDL 161 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHH-HHHHHhhh--cCceEEEEE-HHHHHHHH
Confidence 367899999999999985443 44444332 133556655 34554443
No 223
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.48 E-value=0.014 Score=56.60 Aligned_cols=27 Identities=26% Similarity=0.273 Sum_probs=20.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
.+..+++.+|||+|||.+....+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~ 162 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCV 162 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467799999999999998766554443
No 224
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.45 E-value=0.0075 Score=56.61 Aligned_cols=66 Identities=20% Similarity=0.182 Sum_probs=44.8
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+|+..-.-.|.-|+..+++. .=.=|.+.++-|||||+.++.+.+++....+ .-.++++.=|+..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~--dI~lV~L~G~AGtGKTlLALaAgleqv~e~~-~y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDD--DIDLVSLGGKAGTGKTLLALAAGLEQVLERK-RYRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCC--CCCeEEeeccCCccHhHHHHHHHHHHHHHHh-hhceEEEecCCcCcc
Confidence 57755566677676554431 0133778999999999999999888876643 223566666886664
No 225
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.38 E-value=0.011 Score=60.21 Aligned_cols=75 Identities=21% Similarity=0.105 Sum_probs=54.9
Q ss_pred hhhHHHHHHHhCC-----CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc
Q 010196 53 PVQVAVWQETIGP-----GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (515)
Q Consensus 53 ~~Q~~a~~~~~~~-----~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (515)
|+|.-.+..++.- ...-+.+++.-|=|-|||......++..+.-.+..+..++++++++.-|..+++.++.+...
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~ 80 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEA 80 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHh
Confidence 6777776665531 01114588888999999998776666666544455678999999999999999999888654
No 226
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=96.37 E-value=0.02 Score=65.18 Aligned_cols=124 Identities=17% Similarity=0.169 Sum_probs=79.3
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCc
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGL 130 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 130 (515)
+++-|.+|+. ..+++++|.|.-|||||.+..--++..+..+ ....++++++=|++-+..+.+.+...+... +
T Consensus 2 ~t~~Q~~ai~------~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-~~~~~il~~tFt~~aa~e~~~ri~~~l~~~-~ 73 (1232)
T TIGR02785 2 WTDEQWQAIY------TRGQNILVSASAGSGKTAVLVERIIKKILRG-VDIDRLLVVTFTNAAAREMKERIEEALQKA-L 73 (1232)
T ss_pred CCHHHHHHHh------CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-CCHhhEEEEeccHHHHHHHHHHHHHHHHHH-H
Confidence 6889999964 2488999999999999998776677766654 233469999999999999888887754321 0
Q ss_pred EEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCC-cceEEEEcchhH
Q 010196 131 SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLE-HLCYLVVDETDR 208 (515)
Q Consensus 131 ~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~-~~~~vViDEah~ 208 (515)
. ..+.... +.+.+..-...-|+|-+.|...+.+.....+. +..+=|.||...
T Consensus 74 ~------~~p~~~~--------------------L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q------QEPNSKH--------------------LRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h------cCchhHH--------------------HHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 0010011 11112222356789998887655443322111 234567998886
No 227
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.34 E-value=0.016 Score=51.08 Aligned_cols=60 Identities=18% Similarity=0.215 Sum_probs=34.6
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-cccHHHHHHHHHHHHHhccccCcEEEEee
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (515)
-+++.+|||+|||.+..-.+.....+ +.++.++ +-+--.+ -.++++.++..+++++....
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~----~~~v~lis~D~~R~g--a~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK----GKKVALISADTYRIG--AVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEEEESTSSTH--HHHHHHHHHHHHTEEEEESS
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc----cccceeecCCCCCcc--HHHHHHHHHHHhccccchhh
Confidence 36789999999999877655544443 2234444 3332222 34556666655666655543
No 228
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=96.28 E-value=0.032 Score=53.52 Aligned_cols=39 Identities=26% Similarity=0.525 Sum_probs=30.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.++|||...|..++.......-.++.+|.|.|||..+..
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~ 41 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAER 41 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHH
Confidence 468999999999887533345688999999999986554
No 229
>PRK14974 cell division protein FtsY; Provisional
Probab=96.20 E-value=0.05 Score=52.10 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=22.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
.-+++.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~---~g~~V~li~ 175 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK---NGFSVVIAA 175 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH---cCCeEEEec
Confidence 3477899999999987555443 3333 233565554
No 230
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.10 E-value=0.079 Score=46.41 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=33.4
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+++.+|+|+|||...+-.+.+.+.. +.+++|++.. +-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~----g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR----GEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC----CCcEEEEECC-CCHHHHHHHHHHc
Confidence 6899999999999766555555543 3468888654 5566676666655
No 231
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.10 E-value=0.03 Score=51.11 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
..+++.+++|+|||..+.. +...+... +..++++ +...|.
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~~---g~~v~~i-t~~~l~ 139 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLLR---GKSVLII-TVADIM 139 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHhc---CCeEEEE-EHHHHH
Confidence 4799999999999986554 44444432 2345555 333443
No 232
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.09 E-value=0.063 Score=48.39 Aligned_cols=49 Identities=18% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
..+++.+|+|+|||-. +..+.+.+.+. .++.+++|+... +........+
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~-~~~~~v~y~~~~-~f~~~~~~~~ 83 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQ-HPGKRVVYLSAE-EFIREFADAL 83 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHH-CTTS-EEEEEHH-HHHHHHHHHH
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhc-cccccceeecHH-HHHHHHHHHH
Confidence 3489999999999984 44455544442 234467776543 4444444433
No 233
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.06 E-value=0.035 Score=53.08 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.2
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.+.|+++|+|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5799999999999986554
No 234
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.98 E-value=0.0057 Score=50.63 Aligned_cols=41 Identities=22% Similarity=0.125 Sum_probs=26.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+..+++.+|+|+|||...... ...+... ...++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l-~~~~~~~---~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL-ARELGPP---GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH-HhccCCC---CCCEEEECCEEcc
Confidence 567899999999999864432 2222221 1247777766544
No 235
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.96 E-value=0.17 Score=42.92 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=23.8
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+++.+|+|+|||..+...+..... .+..++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh----cCCEEEEEECCcch
Confidence 578999999999865543333322 23457777654343
No 236
>PRK06893 DNA replication initiation factor; Validated
Probab=95.94 E-value=0.043 Score=49.94 Aligned_cols=23 Identities=17% Similarity=-0.010 Sum_probs=16.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQ 92 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~ 92 (515)
..+++.+|+|+|||......+-+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~ 62 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNH 62 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 45799999999999865444333
No 237
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.94 E-value=0.023 Score=53.45 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=18.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQT 93 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~ 93 (515)
++.+++.+|||+|||.+....+...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~ 218 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARF 218 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999998766544443
No 238
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=95.83 E-value=0.015 Score=49.83 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
+.-.++.+|++||||.. ++..+.+....+.++++..|.
T Consensus 4 g~l~~i~gpM~SGKT~e----Ll~r~~~~~~~g~~v~vfkp~ 41 (201)
T COG1435 4 GWLEFIYGPMFSGKTEE----LLRRARRYKEAGMKVLVFKPA 41 (201)
T ss_pred EEEEEEEccCcCcchHH----HHHHHHHHHHcCCeEEEEecc
Confidence 44568899999999986 555555555566789999886
No 239
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.83 E-value=0.039 Score=53.19 Aligned_cols=76 Identities=18% Similarity=0.274 Sum_probs=52.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (515)
.++.+.+.||||.|||.+.+-.+..+....+ .....||-+-|--.+ -.++++.++.-+++++..++......+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~-~~kVaiITtDtYRIG--A~EQLk~Ya~im~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKK-KKKVAIITTDTYRIG--AVEQLKTYADIMGVPLEVVYSPKELAEAIE 277 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhcc-CcceEEEEeccchhh--HHHHHHHHHHHhCCceEEecCHHHHHHHHH
Confidence 3677899999999999987766665552222 222456666665554 366788888888999988887766555543
No 240
>PRK05973 replicative DNA helicase; Provisional
Probab=95.78 E-value=0.041 Score=49.83 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=56.1
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHH-----HHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAV-----WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a-----~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
+|..+.+...+.||.........+ ...+...+..|.-++|.|++|+|||...+-.+.+.+.+ +.+++|++-
T Consensus 25 ~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~----Ge~vlyfSl 100 (237)
T PRK05973 25 LHEALDRIAAEEGFSSWSLLAAKAAATTPAEELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS----GRTGVFFTL 100 (237)
T ss_pred HHHHHHHHHHHhccchHHHHHHhccCCCCHHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEEE
Confidence 888888888888997544444333 12334555667789999999999999766555555433 336777764
Q ss_pred cHHHHHHHHHHHHHh
Q 010196 110 TRDLALQVKDVFAAI 124 (515)
Q Consensus 110 t~~L~~q~~~~~~~~ 124 (515)
- +-..|+.+.+..+
T Consensus 101 E-es~~~i~~R~~s~ 114 (237)
T PRK05973 101 E-YTEQDVRDRLRAL 114 (237)
T ss_pred e-CCHHHHHHHHHHc
Confidence 3 2245666666655
No 241
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.77 E-value=0.11 Score=54.52 Aligned_cols=92 Identities=16% Similarity=0.254 Sum_probs=58.3
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
.++..-..+.++..++...-|.+.+..++.. ..+-+++.|.=|=|||.+.-+.+. .+.... ...+++|.+|+.+=+
T Consensus 199 ~~~~~~~~l~~l~~T~dQ~~~l~~~~~l~~~--~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-~~~~iiVTAP~~~nv 274 (758)
T COG1444 199 LDPVFPRELYELCLTEDQAEALEILERLLDA--PKRALVLTADRGRGKSAALGIALA-AAARLA-GSVRIIVTAPTPANV 274 (758)
T ss_pred CCCCCCHHHhhhhcChhHHHHHHHHHHHHcC--CCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-CCceEEEeCCCHHHH
Confidence 3333344455555455555555555555441 234688999999999998877663 333221 145789999999988
Q ss_pred HHHHHHHHHhccccCc
Q 010196 115 LQVKDVFAAIAPAVGL 130 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~ 130 (515)
+.+.+.+.+-+..+|.
T Consensus 275 ~~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 275 QTLFEFAGKGLEFLGY 290 (758)
T ss_pred HHHHHHHHHhHHHhCC
Confidence 8887777666655543
No 242
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=95.68 E-value=0.13 Score=52.99 Aligned_cols=73 Identities=14% Similarity=0.094 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (515)
|.|.-.+-+.++++.+ ..+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.++..+..
T Consensus 170 ~~~~~~~~id~~~~~f-kq~~tV~taPRqrGKS~iVgi~l~~La~f---~Gi~IlvTAH~~~ts~evF~rv~~~le~ 242 (752)
T PHA03333 170 PSPRTLREIDRIFDEY-GKCYTAATVPRRCGKTTIMAIILAAMISF---LEIDIVVQAQRKTMCLTLYNRVETVVHA 242 (752)
T ss_pred CChhhHHHHHHHHHHH-hhcceEEEeccCCCcHHHHHHHHHHHHHh---cCCeEEEECCChhhHHHHHHHHHHHHHH
Confidence 4555555555555543 34557778999999999766555543332 2468999999999999999888877653
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.088 Score=50.13 Aligned_cols=40 Identities=28% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCcchhhHHHHHHHhCCCCCCC---CEEEECCCCchhHHHhHH
Q 010196 49 SSLFPVQVAVWQETIGPGLFER---DLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~---~~ii~a~TGsGKT~~~~~ 88 (515)
..++|||..+|..+...+..++ -+++.+|.|+||+..+..
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~ 45 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALA 45 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 5689999999988776554443 488999999999986554
No 244
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.63 E-value=0.88 Score=54.37 Aligned_cols=65 Identities=17% Similarity=0.130 Sum_probs=46.2
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (515)
.+++-|.+|+..++. ...+-.+|.++.|+|||.+ +-.+...+.. .+.+++.++||-.-+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~--s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~---~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFT--STKRFIIINGFGGTGSTEI-AQLLLHLASE---QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHh--CCCCeEEEEECCCCCHHHH-HHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHH
Confidence 588999999887754 1246688999999999975 3334444433 356899999997766555443
No 245
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.61 E-value=0.029 Score=55.96 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=15.8
Q ss_pred CEEEECCCCchhHHHhHHH
Q 010196 71 DLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~ 89 (515)
.+++.||.|+|||.++.+.
T Consensus 42 a~Lf~GP~GtGKTTlAriL 60 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARIL 60 (484)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4799999999999876553
No 246
>PRK12377 putative replication protein; Provisional
Probab=95.61 E-value=0.042 Score=50.26 Aligned_cols=46 Identities=17% Similarity=0.255 Sum_probs=28.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (515)
..++++.+|+|+|||..+.. +...+... +..++ .++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~~---g~~v~-~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLAK---GRSVI-VVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHc---CCCeE-EEEHHHHHHHHHH
Confidence 36799999999999986444 44444432 22344 4454566655443
No 247
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.60 E-value=0.069 Score=50.07 Aligned_cols=56 Identities=11% Similarity=0.024 Sum_probs=34.0
Q ss_pred hCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 63 IGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 63 ~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
+..+..|.-+++.|++|+|||...+..+.+.+.. .+.+++|++-. .-..++...+.
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~---~g~~vl~iS~E-~~~~~~~~r~~ 79 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLITQ---HGVRVGTISLE-EPVVRTARRLL 79 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh---cCceEEEEEcc-cCHHHHHHHHH
Confidence 3444567889999999999998655545544433 13467777532 22334444443
No 248
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.058 Score=52.52 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=27.5
Q ss_pred cchhhHHHHHHHhCCCC---CCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 51 LFPVQVAVWQETIGPGL---FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~---~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
-|.-|...+..++.... .+.|+++.++||+|||.+.-. +.+.+..
T Consensus 21 ~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 21 HREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 45555554443333222 236799999999999997544 4555544
No 249
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.53 E-value=0.033 Score=56.50 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.2
Q ss_pred CCEEEECCCCchhHHHhHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~ 90 (515)
..+++.||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999766543
No 250
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.52 E-value=0.084 Score=53.46 Aligned_cols=48 Identities=17% Similarity=0.154 Sum_probs=28.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (515)
+.+++.||+|+|||..... +...+... .++.+++++. ...+..++...
T Consensus 149 ~~l~l~G~~G~GKThL~~a-i~~~~~~~-~~~~~v~yi~-~~~~~~~~~~~ 196 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHA-IGNYILEK-NPNAKVVYVT-SEKFTNDFVNA 196 (450)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEEE-HHHHHHHHHHH
Confidence 4689999999999986544 33334332 1234566664 34555444333
No 251
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.49 E-value=0.038 Score=51.44 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
..++++.+|+|+|||..+-.
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 46799999999999987544
No 252
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=95.49 E-value=0.072 Score=56.86 Aligned_cols=80 Identities=13% Similarity=0.220 Sum_probs=67.7
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-ccccCCCCCCCEEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~~~GiDi~~v~~VI 408 (515)
.+.+++|.+||+..+...++.++.+. ..++.+..+||+++..+|.++++...+|+.+|+|+|.. +...+.+.++.+||
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 46689999999999999988887653 23588999999999999999999999999999999974 44457788888888
Q ss_pred Ec
Q 010196 409 NY 410 (515)
Q Consensus 409 ~~ 410 (515)
.-
T Consensus 389 ID 390 (681)
T PRK10917 389 ID 390 (681)
T ss_pred Ee
Confidence 53
No 253
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.48 E-value=0.068 Score=61.00 Aligned_cols=65 Identities=17% Similarity=0.159 Sum_probs=44.0
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh-cccCcccEEEEcccHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~ 117 (515)
.+++.|.+|+..++.. .++-++|.+..|+|||.+.- .++..+.. ....+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts--~dr~~~IqG~AGTGKTT~l~-~i~~~~~~l~e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILET--SDRFTVVQGYAGVGKTTQFR-AVMSAVNMLPESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhC--CCceEEEEeCCCCCHHHHHH-HHHHHHHHHhhccCceEEEEechHHHHHHH
Confidence 6999999998887641 24679999999999998632 22222221 112345788899996655444
No 254
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.47 E-value=0.092 Score=47.95 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
+..+++.||+|+|||-....
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a 64 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHA 64 (235)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 46799999999999975443
No 255
>PRK05642 DNA replication initiation factor; Validated
Probab=95.46 E-value=0.088 Score=48.02 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=22.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
..+++.||+|+|||-.... +...+.. .+.+++|+..
T Consensus 46 ~~l~l~G~~G~GKTHLl~a-~~~~~~~---~~~~v~y~~~ 81 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQA-ACLRFEQ---RGEPAVYLPL 81 (234)
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHHHh---CCCcEEEeeH
Confidence 5688999999999975333 3333322 1235666553
No 256
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.42 E-value=0.14 Score=51.59 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=30.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
+.+++.|++|+|||... ..+...+... .++.+++++.+ .++..++...+
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~-~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESN-FSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHh-CCCCeEEEEEH-HHHHHHHHHHH
Confidence 45899999999999643 3344444432 23446776655 45655555444
No 257
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.37 E-value=0.12 Score=59.87 Aligned_cols=65 Identities=17% Similarity=0.165 Sum_probs=44.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc-ccCcccEEEEcccHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~~lil~Pt~~L~~q~ 117 (515)
.+++.|.+|+..++.. .++-++|.+..|+|||.+. -.++..+... ...+..++.++||-.=+..+
T Consensus 967 ~Lt~~Q~~Av~~il~s--~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 967 GLTSGQRAATRMILES--TDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CCCHHHHHHHHHHHhC--CCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 6999999998887641 2467889999999999863 3344443321 12345788899997665443
No 258
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.37 E-value=0.15 Score=54.27 Aligned_cols=44 Identities=18% Similarity=0.267 Sum_probs=27.8
Q ss_pred cchhhHHHHHHHhCCCCCC---CCE-EEECCCCchhHHHhHHHHHHHhh
Q 010196 51 LFPVQVAVWQETIGPGLFE---RDL-CINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~-ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
-|.-|.+.+..++...+.+ .++ +|.|+||+|||++.-. ++..|.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 4666666665555443322 344 5999999999997544 444443
No 259
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.33 E-value=0.047 Score=52.05 Aligned_cols=66 Identities=20% Similarity=0.248 Sum_probs=43.2
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 41 ~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+.+.+.|+ +.+.|.+.+..++. .+.++++.++||||||. ++-.++..+... .+..+++++-.+.+|
T Consensus 125 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTT-ll~aL~~~~~~~-~~~~rivtIEd~~El 190 (319)
T PRK13894 125 DQYVERGI--MTAAQREAIIAAVR---AHRNILVIGGTGSGKTT-LVNAIINEMVIQ-DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHH-HHHHHHHhhhhc-CCCceEEEEcCCCcc
Confidence 34445565 56778877766553 57899999999999995 445555444221 123467777777666
No 260
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=95.29 E-value=0.011 Score=66.50 Aligned_cols=96 Identities=23% Similarity=0.380 Sum_probs=77.9
Q ss_pred CeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccC-----------HHHHHHHHHHHhcCCceEEEecCCccccCCC
Q 010196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR-----------QSVRSKTLKAFREGKIQVLVSSDAMTRGMDV 401 (515)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~-----------~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi 401 (515)
-..++|++....+..+.+.+........ ..+.|.+. ...+.+++..|....+++|++|.++.+|+|+
T Consensus 293 l~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 293 LSGIIFVDQRYTAYVLLELLREIFSNDP--LFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred hhheeecccchHHHHHHHHHHHhhccCc--ceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 4579999999999988888876543222 22333322 2336789999999999999999999999999
Q ss_pred CCCCEEEEccCCCChhhhHHhhhhcccCC
Q 010196 402 EGVNNVVNYDKPAYIKTYIHRAGRTARAG 430 (515)
Q Consensus 402 ~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g 430 (515)
+.++.|+.++.|...+.|+|..||+.+.+
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccch
Confidence 99999999999999999999999997764
No 261
>PRK08727 hypothetical protein; Validated
Probab=95.28 E-value=0.08 Score=48.28 Aligned_cols=35 Identities=17% Similarity=0.120 Sum_probs=22.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
..+++.+|+|+|||-.....+. .+.+. +.+++|+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~-~~~~~---~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCA-AAEQA---GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHH-HHHHc---CCcEEEEe
Confidence 4599999999999975443333 33332 33566654
No 262
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.25 E-value=0.046 Score=47.39 Aligned_cols=46 Identities=20% Similarity=0.249 Sum_probs=28.0
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
..+.++++.+|+|+|||..+...+.+.+.. +..++++ +..+|...+
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~----g~~v~f~-~~~~L~~~l 90 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRK----GYSVLFI-TASDLLDEL 90 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHT----T--EEEE-EHHHHHHHH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccC----CcceeEe-ecCceeccc
Confidence 357899999999999999766544444432 2345554 555665543
No 263
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.21 E-value=0.1 Score=52.48 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=55.8
Q ss_pred CHHHHHHHHhCCCCC-------cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc--ccCcccEEE
Q 010196 36 DPRLKVALQNMGISS-------LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALV 106 (515)
Q Consensus 36 ~~~l~~~l~~~~~~~-------~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~~li 106 (515)
+.-+..+|++.-=.. .-+-|-++ +. ...++-+++++..|||||.+++.-+...++.. ...+..++|
T Consensus 191 dEvL~~~Lek~ss~~mrdIV~TIQkEQneI----IR-~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlv 265 (747)
T COG3973 191 DEVLQRVLEKNSSAKMRDIVETIQKEQNEI----IR-FEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLV 265 (747)
T ss_pred HHHHHHHHHhccchhHHHHHHHhhHhHHHH----Hh-ccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEE
Confidence 344556666643333 33444444 32 23467799999999999999887666555543 223445999
Q ss_pred EcccHHHHHHHHHHHHHhcc
Q 010196 107 VLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 107 l~Pt~~L~~q~~~~~~~~~~ 126 (515)
+.|++-...=+.+.+-+++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999988777776666543
No 264
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.19 E-value=0.12 Score=51.71 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=24.3
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
..+++.||+|+|||.... .+...+... ..+..++++..
T Consensus 137 n~l~l~G~~G~GKThL~~-ai~~~l~~~-~~~~~v~yi~~ 174 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLH-AIGNEILEN-NPNAKVVYVSS 174 (405)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHHh-CCCCcEEEEEH
Confidence 458899999999998654 344444432 22345677643
No 265
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.17 E-value=0.18 Score=53.05 Aligned_cols=18 Identities=22% Similarity=0.276 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHH
Q 010196 71 DLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~ 88 (515)
-+|+.+|.|+|||.++.+
T Consensus 40 AyLFtGPpGvGKTTlAri 57 (830)
T PRK07003 40 AYLFTGTRGVGKTTLSRI 57 (830)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468999999999987554
No 266
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.15 E-value=0.19 Score=51.92 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=27.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (515)
+.++|.+++|+|||.... .+...+... ..+.+++|+.- .+++.++...
T Consensus 315 NpL~LyG~sGsGKTHLL~-AIa~~a~~~-~~g~~V~Yita-eef~~el~~a 362 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLH-AIGHYARRL-YPGTRVRYVSS-EEFTNEFINS 362 (617)
T ss_pred CcEEEECCCCCCHHHHHH-HHHHHHHHh-CCCCeEEEeeH-HHHHHHHHHH
Confidence 348999999999998543 333434331 12345665553 4555544433
No 267
>PRK09183 transposase/IS protein; Provisional
Probab=95.14 E-value=0.38 Score=44.61 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
.+.++++.+|+|+|||..+...+...... +..++++. ..+|..++
T Consensus 101 ~~~~v~l~Gp~GtGKThLa~al~~~a~~~----G~~v~~~~-~~~l~~~l 145 (259)
T PRK09183 101 RNENIVLLGPSGVGKTHLAIALGYEAVRA----GIKVRFTT-AADLLLQL 145 (259)
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHHHHc----CCeEEEEe-HHHHHHHH
Confidence 47899999999999998655443333322 33566554 34555443
No 268
>PRK14873 primosome assembly protein PriA; Provisional
Probab=95.13 E-value=0.16 Score=53.57 Aligned_cols=95 Identities=17% Similarity=0.101 Sum_probs=77.4
Q ss_pred CCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC
Q 010196 316 SKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (515)
Q Consensus 316 ~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~ 393 (515)
...|.+.+..++... .+..+||.++....+..+.+.|+.... +..+..+|++++..+|.+......+|+.+|+|+|.
T Consensus 170 GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~-~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtR 248 (665)
T PRK14873 170 GEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG-AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTR 248 (665)
T ss_pred CCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcc
Confidence 357888888877643 477899999999999999999987542 24688999999999999999999999999999998
Q ss_pred CccccCCCCCCCEEEEccC
Q 010196 394 AMTRGMDVEGVNNVVNYDK 412 (515)
Q Consensus 394 ~~~~GiDi~~v~~VI~~~~ 412 (515)
.+. =.-+++..+||..+-
T Consensus 249 SAv-FaP~~~LgLIIvdEE 266 (665)
T PRK14873 249 SAV-FAPVEDLGLVAIWDD 266 (665)
T ss_pred eeE-EeccCCCCEEEEEcC
Confidence 743 356667788887653
No 269
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.11 E-value=0.079 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=19.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQT 93 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~ 93 (515)
++.+++.+|||+|||.+....+...
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~ 245 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARY 245 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5678899999999998766544433
No 270
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=95.11 E-value=0.074 Score=56.71 Aligned_cols=73 Identities=12% Similarity=0.320 Sum_probs=58.5
Q ss_pred HHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcC----CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcc
Q 010196 323 LVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFG----ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT 396 (515)
Q Consensus 323 l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~----~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~ 396 (515)
+..+.-...+.++++.+||...+...++.|..+. ..+..+. ||+.++..++++++++|.+|+.+|||+|..+-
T Consensus 116 ~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs~FL 192 (1187)
T COG1110 116 LMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTSQFL 192 (1187)
T ss_pred HHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeHHHH
Confidence 4444444457899999999999999998887643 2334444 99999999999999999999999999998653
No 271
>CHL00181 cbbX CbbX; Provisional
Probab=95.09 E-value=0.11 Score=48.80 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=17.8
Q ss_pred CCCEEEECCCCchhHHHhHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
+.++++.+|+|+|||..+-..+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la 80 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMA 80 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5568999999999999766543
No 272
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.08 E-value=0.12 Score=53.00 Aligned_cols=92 Identities=8% Similarity=0.093 Sum_probs=70.8
Q ss_pred CCcHHHHHHHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC
Q 010196 317 KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 317 ~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
..|.......+.. ..+.++||.+|++..+..+++.|++.. +..+..+||+++..+|.+......+|+.+|+|+|..
T Consensus 8 sGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f--~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrs 85 (505)
T TIGR00595 8 SGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRF--GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRS 85 (505)
T ss_pred CCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChH
Confidence 4565555444432 236789999999999999999998643 257889999999999999999999999999999975
Q ss_pred ccccCCCCCCCEEEEcc
Q 010196 395 MTRGMDVEGVNNVVNYD 411 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~ 411 (515)
+-. ..++++.+||.-.
T Consensus 86 alf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 86 ALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHc-CcccCCCEEEEEC
Confidence 432 4566788887654
No 273
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.08 E-value=0.07 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=19.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
..++++.||+|+|||.+.-. ++..+.
T Consensus 55 ~~~~lI~G~~GtGKT~l~~~-v~~~l~ 80 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTTVKK-VFEELE 80 (394)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 46799999999999986433 444443
No 274
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.07 E-value=0.11 Score=52.47 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=17.6
Q ss_pred CCCEEEECCCCchhHHHhHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
.+.+++.||.|+|||.++.+.+
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilA 56 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIIS 56 (491)
T ss_pred CceEEEECCCCccHHHHHHHHH
Confidence 3569999999999998765443
No 275
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.01 E-value=0.13 Score=51.82 Aligned_cols=61 Identities=16% Similarity=0.069 Sum_probs=37.8
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
++.++. .+..|.-+++.+++|+|||...+..+..... .+.+++|+.-. +-..|+......+
T Consensus 69 LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~----~g~~vlYvs~E-es~~qi~~ra~rl 130 (446)
T PRK11823 69 LDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA----AGGKVLYVSGE-ESASQIKLRAERL 130 (446)
T ss_pred HHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh----cCCeEEEEEcc-ccHHHHHHHHHHc
Confidence 445454 3445677889999999999865544443332 23478888754 4445665555544
No 276
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.00 E-value=0.0095 Score=51.01 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=26.1
Q ss_pred EEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 73 ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
++.|+=|-|||.+.-+.+...+..+ ..+++|.+|+.+=++.+.+.+...+...
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~ 53 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG---KIRILVTAPSPENVQTLFEFAEKGLKAL 53 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS--------EEEE-SS--S-HHHHHCC-------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc---CceEEEecCCHHHHHHHHHHHHhhcccc
Confidence 5788999999987665444433332 2468999999887777766665544433
No 277
>PRK08116 hypothetical protein; Validated
Probab=94.96 E-value=0.22 Score=46.42 Aligned_cols=44 Identities=25% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~ 118 (515)
..+++.|++|+|||..+.. +.+.+... +..++++ +..++..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~a-ia~~l~~~---~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAAC-IANELIEK---GVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHHc---CCeEEEE-EHHHHHHHHH
Confidence 4599999999999986543 55555442 2234444 4455554443
No 278
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.92 E-value=0.085 Score=50.22 Aligned_cols=64 Identities=23% Similarity=0.275 Sum_probs=42.5
Q ss_pred HHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 43 l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+.+.|. +++.|.+.+..++. .+.+++++++||||||.. +-.++..+...+ +..+++.+=.+.||
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~---~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-~~~rivtiEd~~El 186 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAID---SRLNIVISGGTGSGKTTL-ANAVIAEIVASA-PEDRLVILEDTAEI 186 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-CCceEEEecCCccc
Confidence 334454 66778877766654 478999999999999974 445555553321 23367777666676
No 279
>PRK05580 primosome assembly protein PriA; Validated
Probab=94.92 E-value=0.15 Score=54.42 Aligned_cols=92 Identities=7% Similarity=0.082 Sum_probs=70.9
Q ss_pred CCcHHHHHHHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC
Q 010196 317 KLKPLYLVALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 317 ~~k~~~l~~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
..|.......+.. ..+.++||.++++..+..+.+.|++.. +..+..+||+++..+|.+......+|+.+|+|+|..
T Consensus 173 SGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~f--g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrs 250 (679)
T PRK05580 173 SGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARF--GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARS 250 (679)
T ss_pred ChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHh--CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccH
Confidence 4566554443322 136789999999999999999998643 367899999999999999999999999999999975
Q ss_pred ccccCCCCCCCEEEEcc
Q 010196 395 MTRGMDVEGVNNVVNYD 411 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~ 411 (515)
... +.+.++.+||.-+
T Consensus 251 al~-~p~~~l~liVvDE 266 (679)
T PRK05580 251 ALF-LPFKNLGLIIVDE 266 (679)
T ss_pred Hhc-ccccCCCEEEEEC
Confidence 332 5567788887655
No 280
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.91 E-value=0.11 Score=48.20 Aligned_cols=16 Identities=31% Similarity=0.447 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHH
Q 010196 70 RDLCINSPTGSGKTLS 85 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~ 85 (515)
.++++.++||.|||..
T Consensus 62 p~lLivG~snnGKT~I 77 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMI 77 (302)
T ss_pred CceEEecCCCCcHHHH
Confidence 6899999999999984
No 281
>PLN03025 replication factor C subunit; Provisional
Probab=94.89 E-value=0.15 Score=49.13 Aligned_cols=19 Identities=37% Similarity=0.601 Sum_probs=16.0
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.++++.||+|+|||..+..
T Consensus 35 ~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILA 53 (319)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5699999999999986544
No 282
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.89 E-value=0.22 Score=47.93 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=30.9
Q ss_pred CcchhhHHHHHHHhCCCCCC---CCEEEECCCCchhHHHhHH
Q 010196 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~ii~a~TGsGKT~~~~~ 88 (515)
.++|||..+|..+...+..+ .-.++.+|.|.||+..+..
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~ 43 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHH
Confidence 46899999999887765444 3578999999999987554
No 283
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=94.88 E-value=0.17 Score=45.97 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.4
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.+..+++.||+|+|||..+..
T Consensus 37 ~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 367899999999999986544
No 284
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=94.86 E-value=0.1 Score=45.99 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=16.8
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
.++++.+|+|+|||.+....
T Consensus 49 P~liisGpPG~GKTTsi~~L 68 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCL 68 (333)
T ss_pred CceEeeCCCCCchhhHHHHH
Confidence 68999999999999975543
No 285
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.83 E-value=0.21 Score=50.21 Aligned_cols=38 Identities=24% Similarity=0.201 Sum_probs=24.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
..+++.||+|+|||..... +.+.+... .++.+++|+..
T Consensus 131 n~l~lyG~~G~GKTHLl~a-i~~~l~~~-~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHHH-HHHHHHHh-CCCCeEEEEEH
Confidence 4699999999999986543 44444332 12346777654
No 286
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=94.83 E-value=0.078 Score=47.05 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.++++.+|+|+|||..+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA~I 69 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARI 69 (233)
T ss_dssp -EEEEESSTTSSHHHHHHH
T ss_pred ceEEEECCCccchhHHHHH
Confidence 4799999999999985443
No 287
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.83 E-value=0.1 Score=50.91 Aligned_cols=52 Identities=15% Similarity=0.180 Sum_probs=30.7
Q ss_pred CHHHHHHHHhCCCCCcchhhHHH-H---HHHhCCCCCCCCEEEECCCCchhHHHhHH
Q 010196 36 DPRLKVALQNMGISSLFPVQVAV-W---QETIGPGLFERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 36 ~~~l~~~l~~~~~~~~~~~Q~~a-~---~~~~~~~~~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.+++.=-|...|++ |..+..++ + ...++-+..+.|++..+|+|+|||..|..
T Consensus 173 dEWid~LlrSiG~~-P~~~~~r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~ 228 (449)
T TIGR02688 173 EEWIDVLIRSIGYE-PEGFEARQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNN 228 (449)
T ss_pred HHHHHHHHHhcCCC-cccCChHHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHH
Confidence 34555555567873 33222211 1 12212234689999999999999976653
No 288
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.81 E-value=0.15 Score=43.51 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=16.8
Q ss_pred CCEEEECCCCchhHHHhHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
..+++.+|.|+||+..+...+-
T Consensus 20 ha~L~~G~~g~gk~~~a~~~a~ 41 (162)
T PF13177_consen 20 HALLFHGPSGSGKKTLALAFAR 41 (162)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEECCCCCCHHHHHHHHHH
Confidence 4579999999999986554333
No 289
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.81 E-value=0.016 Score=50.24 Aligned_cols=45 Identities=22% Similarity=0.200 Sum_probs=28.6
Q ss_pred HHhhccCCcEEEeCChHHHHHHhcCcCC-CCCcceEEEEcchhHHH
Q 010196 166 LQELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLL 210 (515)
Q Consensus 166 ~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~l~ 210 (515)
.+.....++|||+++..|++-....... ...+-.+|||||||.+.
T Consensus 113 ~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~ 158 (174)
T PF06733_consen 113 ARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLE 158 (174)
T ss_dssp HHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCG
T ss_pred HHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchH
Confidence 3455567899999999887654331111 11234689999999974
No 290
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.79 E-value=0.07 Score=55.17 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=16.2
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
.-+++.||.|+|||.++.+.
T Consensus 38 HAyLF~GPpGvGKTTlAriL 57 (702)
T PRK14960 38 HAYLFTGTRGVGKTTIARIL 57 (702)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45699999999999876543
No 291
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.79 E-value=0.13 Score=53.11 Aligned_cols=57 Identities=18% Similarity=0.326 Sum_probs=39.4
Q ss_pred EEEe-CChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCC
Q 010196 175 ILVA-TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSD 235 (515)
Q Consensus 175 Ivv~-Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~ 235 (515)
=+|| =||++.+-+...+..+. ++++||+|.|..+-.++--..+++-+.+.....|.+
T Consensus 398 TYIGamPGrIiQ~mkka~~~NP----v~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~D 455 (782)
T COG0466 398 TYIGAMPGKIIQGMKKAGVKNP----VFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSD 455 (782)
T ss_pred cccccCChHHHHHHHHhCCcCC----eEEeechhhccCCCCCChHHHHHhhcCHhhcCchhh
Confidence 3444 49999999887554332 789999999987766666677777666554444443
No 292
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=94.72 E-value=0.14 Score=54.14 Aligned_cols=80 Identities=14% Similarity=0.218 Sum_probs=67.0
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcc-ccCCCCCCCEEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT-RGMDVEGVNNVV 408 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~-~GiDi~~v~~VI 408 (515)
.+.++++.+||+.-+...++.++.+. ..++.+..++|+++..+|..+++...+|+.+|+|+|..+- ..+++.++.+||
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvV 362 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVI 362 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEE
Confidence 46689999999999999998887653 2468999999999999999999999999999999997543 457777888877
Q ss_pred Ec
Q 010196 409 NY 410 (515)
Q Consensus 409 ~~ 410 (515)
.-
T Consensus 363 ID 364 (630)
T TIGR00643 363 ID 364 (630)
T ss_pred Ee
Confidence 53
No 293
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.69 E-value=0.34 Score=44.03 Aligned_cols=20 Identities=20% Similarity=0.288 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.||+|+|||..+.
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35689999999999997544
No 294
>PHA02533 17 large terminase protein; Provisional
Probab=94.68 E-value=0.12 Score=52.95 Aligned_cols=71 Identities=14% Similarity=0.015 Sum_probs=51.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
.|.|+|...+..+. .++-.++..+=..|||.+....++..+... ++..+++++|+..-+..+.+.++....
T Consensus 59 ~L~p~Q~~i~~~~~----~~R~~ii~~aRq~GKStl~a~~al~~a~~~--~~~~v~i~A~~~~QA~~vF~~ik~~ie 129 (534)
T PHA02533 59 QMRDYQKDMLKIMH----KNRFNACNLSRQLGKTTVVAIFLLHYVCFN--KDKNVGILAHKASMAAEVLDRTKQAIE 129 (534)
T ss_pred CCcHHHHHHHHHHh----cCeEEEEEEcCcCChHHHHHHHHHHHHHhC--CCCEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 58899999876642 245557778888999998776555444332 345899999999999988888876543
No 295
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.65 E-value=0.1 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=21.1
Q ss_pred HHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 61 ETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 61 ~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
.++..+..++++++.+|+|+|||..+.
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 334445568999999999999998654
No 296
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=94.60 E-value=0.13 Score=48.63 Aligned_cols=66 Identities=24% Similarity=0.318 Sum_probs=42.8
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 41 ~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+.+.+.|. +.+.|.+.+..++. .+.+++++++||||||.. +-.++..+... .+..+++++=.+.|+
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~---~~~~ilI~G~tGSGKTTl-l~al~~~i~~~-~~~~ri~tiEd~~El 174 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVL---ARKNILVVGGTGSGKTTL-ANALLAEIAKN-DPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHH---cCCeEEEECCCCCCHHHH-HHHHHHHhhcc-CCCceEEEECCchhh
Confidence 33444453 55666666666553 478999999999999984 44455555432 123467777777776
No 297
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.58 E-value=0.081 Score=55.17 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.1
Q ss_pred EEEECCCCchhHHHhHHH
Q 010196 72 LCINSPTGSGKTLSYALP 89 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~ 89 (515)
+|+.||.|+|||.++.+.
T Consensus 41 yLf~Gp~GvGKTTlAr~l 58 (647)
T PRK07994 41 YLFSGTRGVGKTTIARLL 58 (647)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 689999999999876543
No 298
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.56 E-value=0.16 Score=51.91 Aligned_cols=19 Identities=21% Similarity=0.277 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.-+++.||.|+|||.++.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~ 57 (509)
T PRK14958 39 HAYLFTGTRGVGKTTISRI 57 (509)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3478999999999987654
No 299
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.42 E-value=0.25 Score=49.99 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=16.0
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
..+++.||+|+|||..+.+.
T Consensus 37 ~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34799999999999876543
No 300
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.40 E-value=0.16 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=18.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQ 92 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~ 92 (515)
.++++++.||+|+|||..+...+-+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~ 179 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANE 179 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999865543333
No 301
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.37 E-value=0.11 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=19.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
+.++++.||+|+|||.+.. .++..+.
T Consensus 40 ~~~i~I~G~~GtGKT~l~~-~~~~~l~ 65 (365)
T TIGR02928 40 PSNVFIYGKTGTGKTAVTK-YVMKELE 65 (365)
T ss_pred CCcEEEECCCCCCHHHHHH-HHHHHHH
Confidence 4689999999999998643 3444443
No 302
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.36 E-value=0.43 Score=48.28 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=19.6
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHH
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQ 92 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~ 92 (515)
..|+.+.+.+|||+|||......+..
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~ 373 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQR 373 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 34677889999999999876554443
No 303
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.037 Score=54.18 Aligned_cols=18 Identities=28% Similarity=0.326 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHH
Q 010196 71 DLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~ 88 (515)
.+++.||.|+|||..+..
T Consensus 40 ~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 40 AWLLSGTRGVGKTTIARL 57 (363)
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 368999999999987554
No 304
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.29 E-value=0.2 Score=49.00 Aligned_cols=61 Identities=15% Similarity=0.057 Sum_probs=36.0
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+..++. .+..|.-+++.+++|+|||...+..+...... +.+++|+.-. +-..|+......+
T Consensus 71 LD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~----g~~VlYvs~E-Es~~qi~~Ra~rl 132 (372)
T cd01121 71 LDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKR----GGKVLYVSGE-ESPEQIKLRADRL 132 (372)
T ss_pred HHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhc----CCeEEEEECC-cCHHHHHHHHHHc
Confidence 344443 23456678899999999998655443333222 3368888654 3345555544443
No 305
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.21 E-value=0.26 Score=47.06 Aligned_cols=39 Identities=15% Similarity=0.146 Sum_probs=30.3
Q ss_pred cchhhHHHHHHHhCCCCCC---CCEEEECCCCchhHHHhHHH
Q 010196 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~ii~a~TGsGKT~~~~~~ 89 (515)
++|||...|..+...+..+ .-.++.||.|.||+..+...
T Consensus 3 ~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~ 44 (325)
T PRK06871 3 LYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRAL 44 (325)
T ss_pred CCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHH
Confidence 5799999998877665554 35779999999999865543
No 306
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=94.18 E-value=0.19 Score=48.63 Aligned_cols=65 Identities=15% Similarity=0.103 Sum_probs=36.2
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 27 CPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 27 ~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
..|+.+.+++|.-.-.+... .+.+.=.+++..+++ +-.|+..+|.||.|+|||... .-+...+..
T Consensus 131 ~~f~~l~p~~p~~R~~le~~---~~~~~~~rvID~l~P-IGkGQR~lIvgppGvGKTTLa-K~Ian~I~~ 195 (416)
T PRK09376 131 PLFENLTPLYPNERLRLETG---NPEDLSTRIIDLIAP-IGKGQRGLIVAPPKAGKTVLL-QNIANSITT 195 (416)
T ss_pred CCcccCCCCChhhcccccCC---CCcccceeeeeeecc-cccCceEEEeCCCCCChhHHH-HHHHHHHHh
Confidence 33555545555443333220 134444555554333 346899999999999999643 334444443
No 307
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.17 E-value=0.28 Score=49.02 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.8
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.++++.||+|+|||..+..
T Consensus 37 ~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 37 SSMILWGPPGTGKTTLARI 55 (413)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4799999999999986543
No 308
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=94.16 E-value=0.36 Score=46.37 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=16.5
Q ss_pred cceEEEEcchhHHHHHHHHhHHHHHHh
Q 010196 197 HLCYLVVDETDRLLREAYQAWLPTVLQ 223 (515)
Q Consensus 197 ~~~~vViDEah~l~~~~~~~~~~~i~~ 223 (515)
..++||+||+|.+........+..+++
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le 126 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFME 126 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHH
Confidence 457899999998733333344444443
No 309
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.15 E-value=0.23 Score=49.90 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=26.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
+.+++.||+|+|||.... .+...+... +.+++++.. ..+..+.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~---~~~v~yi~~-~~f~~~~ 184 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRES---GGKILYVRS-ELFTEHL 184 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHc---CCCEEEeeH-HHHHHHH
Confidence 458999999999998544 344444332 346777654 3444433
No 310
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.098 Score=54.39 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=17.7
Q ss_pred CCEEEECCCCchhHHHhHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
+.+++.+|.|+|||.++.+.+-
T Consensus 47 ha~L~~Gp~GvGKTt~Ar~lAk 68 (598)
T PRK09111 47 QAFMLTGVRGVGKTTTARILAR 68 (598)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999997665443
No 311
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.11 E-value=0.17 Score=60.13 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=43.3
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH---HHHHHHhhhcccCcccEEEEcccHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA---LPIVQTLSNRAVRCLRALVVLPTRDLALQV 117 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~---~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~ 117 (515)
.+++.|.+|+..++. ..++-++|.++.|+|||.... -++.+.+.. .+..++.++||-.-+.++
T Consensus 1019 ~Lt~~Q~~Ai~~il~--~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~---~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1019 RLTHGQKQAIHLIIS--TKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES---EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCHHHHHHHHHHHh--CCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh---cCCeEEEEeChHHHHHHH
Confidence 699999999888754 124567889999999998641 223333322 345788899996655444
No 312
>PRK10867 signal recognition particle protein; Provisional
Probab=94.10 E-value=0.64 Score=46.30 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=33.2
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-c-ccHHHHHHHHHHHHHhccccCcEEEEe
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-L-PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~-Pt~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (515)
-+++++++|+|||.+..-.+...... .+.+++++ + +.|.-+. +.++.++...++.+...
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~l~~~---~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~ 162 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKYLKKK---KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPS 162 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHh---cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEec
Confidence 37789999999999876655543332 12345555 3 4444332 23344444456665543
No 313
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.08 E-value=0.66 Score=45.99 Aligned_cols=62 Identities=18% Similarity=0.113 Sum_probs=35.6
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc--ccHHHHHHHHHHHHHhccccCcEEEEeecCC
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVGQS 139 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~ 139 (515)
-+.+.+++|+|||.+..-.+.. +.. .+.++++++ |.|.-+. ++++.++...++.+.......
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~-l~~---~G~kV~lV~~D~~R~aA~---eQLk~~a~~~~vp~~~~~~~~ 165 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYY-YQR---KGFKPCLVCADTFRAGAF---DQLKQNATKARIPFYGSYTES 165 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-HHH---CCCCEEEEcCcccchhHH---HHHHHHhhccCCeEEeecCCC
Confidence 3678999999999876654442 332 233566554 4454333 344555555566665544433
No 314
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.06 E-value=0.099 Score=47.49 Aligned_cols=54 Identities=20% Similarity=0.142 Sum_probs=37.2
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhh-cccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSN-RAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+..|..+++.+|+|+|||...+-.+.+.+.+ +. +++|++-. +-..++.+.++.+
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge----~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE----KVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT------EEEEESS-S-HHHHHHHHHTT
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC----cEEEEEec-CCHHHHHHHHHHc
Confidence 3457889999999999999766666666665 43 68888743 4446667777665
No 315
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=94.05 E-value=0.15 Score=49.64 Aligned_cols=29 Identities=24% Similarity=0.166 Sum_probs=20.9
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
+-.|+.+++.+|+|+|||..... +...+.
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~~~-i~~~I~ 193 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLLQK-IAQAIT 193 (415)
T ss_pred eCCCCEEEEECCCCCChhHHHHH-HHHhhc
Confidence 34688999999999999975333 444443
No 316
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=94.03 E-value=0.3 Score=47.77 Aligned_cols=40 Identities=23% Similarity=0.118 Sum_probs=25.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
..-+++.||+|+|||-....+.-..+.. .+..+++++...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~--~~~a~v~y~~se 152 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALAN--GPNARVVYLTSE 152 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhh--CCCceEEeccHH
Confidence 4569999999999998544433333333 233456666543
No 317
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.94 E-value=0.27 Score=50.97 Aligned_cols=21 Identities=19% Similarity=0.197 Sum_probs=16.5
Q ss_pred CCEEEECCCCchhHHHhHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~ 90 (515)
+-+|+.+|.|+|||..+.+.+
T Consensus 39 HA~LFtGP~GvGKTTLAriLA 59 (700)
T PRK12323 39 HAYLFTGTRGVGKTTLSRILA 59 (700)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 346999999999998765533
No 318
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=93.93 E-value=0.19 Score=47.80 Aligned_cols=54 Identities=20% Similarity=0.077 Sum_probs=34.7
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.+..++. .+..|+-+.|.+|+|+|||..++..+.+.... +..++|+.....+-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~----g~~v~yId~E~~~~~ 97 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDP 97 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEcccchhHH
Confidence 3444453 44556778899999999999766555544432 346888866544443
No 319
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.91 E-value=0.16 Score=48.71 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=28.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~ 118 (515)
+.++++.||||+|||..+.. +...+... +..|+++ +...|..++.
T Consensus 183 ~~~Lll~G~~GtGKThLa~a-Ia~~l~~~---g~~V~y~-t~~~l~~~l~ 227 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNC-IAKELLDR---GKSVIYR-TADELIEILR 227 (329)
T ss_pred CCcEEEECCCCCcHHHHHHH-HHHHHHHC---CCeEEEE-EHHHHHHHHH
Confidence 58899999999999986544 33334332 3345554 4456655443
No 320
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.90 E-value=0.15 Score=52.22 Aligned_cols=20 Identities=25% Similarity=0.182 Sum_probs=16.0
Q ss_pred CEEEECCCCchhHHHhHHHH
Q 010196 71 DLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~ 90 (515)
.+++.||.|+|||..+.+.+
T Consensus 40 a~Lf~Gp~GvGKTTlAr~lA 59 (546)
T PRK14957 40 AYLFTGTRGVGKTTLGRLLA 59 (546)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999998765533
No 321
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.88 E-value=0.12 Score=47.33 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=41.4
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+..++. .+..|..+++.+|+|+|||..++-.+.+.+.+ +.+++|++- .+-..|+.+.+..+.
T Consensus 10 LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~----ge~~lyvs~-ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 10 MDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGIYVAL-EEHPVQVRRNMAQFG 72 (237)
T ss_pred HHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc----CCcEEEEEe-eCCHHHHHHHHHHhC
Confidence 344443 34467889999999999999766555555543 336888874 355666777666653
No 322
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=93.87 E-value=0.15 Score=48.55 Aligned_cols=54 Identities=19% Similarity=0.049 Sum_probs=35.8
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.+..++. .+..|+-+.+.+|+|+|||..++..+.+.... +..++|+.+...+-.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~----g~~~vyId~E~~~~~ 97 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKL----GGTVAFIDAEHALDP 97 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCCEEEECccccHHH
Confidence 4455554 34456778899999999998766555544332 347888887665544
No 323
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=93.80 E-value=0.34 Score=53.21 Aligned_cols=80 Identities=11% Similarity=0.250 Sum_probs=66.4
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-ccccCCCCCCCEEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~~~GiDi~~v~~VI 408 (515)
.+.+++|.+||+..|...++.++.. ...++.+..++|..+..++.++++.++.|+++|+|+|.. +...+.+.++.+||
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llV 578 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLI 578 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEE
Confidence 4578999999999999999988763 334578889999999999999999999999999999974 44557788888877
Q ss_pred Ec
Q 010196 409 NY 410 (515)
Q Consensus 409 ~~ 410 (515)
.-
T Consensus 579 ID 580 (926)
T TIGR00580 579 ID 580 (926)
T ss_pred ee
Confidence 63
No 324
>PRK09354 recA recombinase A; Provisional
Probab=93.74 E-value=0.25 Score=47.37 Aligned_cols=53 Identities=21% Similarity=0.079 Sum_probs=35.4
Q ss_pred HHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
+..++. .+..|+-+.+.+|+|+|||..++..+.+.... +..++|+..-.++-.
T Consensus 48 LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~----G~~~~yId~E~s~~~ 102 (349)
T PRK09354 48 LDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKA----GGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchHH
Confidence 444444 34456778899999999999766655554433 447888876655543
No 325
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.71 E-value=0.19 Score=53.84 Aligned_cols=17 Identities=29% Similarity=0.300 Sum_probs=14.6
Q ss_pred EEEECCCCchhHHHhHH
Q 010196 72 LCINSPTGSGKTLSYAL 88 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~ 88 (515)
+|+.||.|+|||.++.+
T Consensus 41 yLFtGPpGtGKTTLARi 57 (944)
T PRK14949 41 YLFTGTRGVGKTSLARL 57 (944)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 58999999999987654
No 326
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=93.71 E-value=0.21 Score=47.14 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
..+|+++|.|+|||..+-+.+. ..+....+.+=+.-|.+-..++.+.+++
T Consensus 163 pSmIlWGppG~GKTtlArlia~----tsk~~SyrfvelSAt~a~t~dvR~ife~ 212 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIAS----TSKKHSYRFVELSATNAKTNDVRDIFEQ 212 (554)
T ss_pred CceEEecCCCCchHHHHHHHHh----hcCCCceEEEEEeccccchHHHHHHHHH
Confidence 4699999999999986443222 2222334566666666666655555443
No 327
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=93.67 E-value=0.91 Score=43.58 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=29.4
Q ss_pred cchhhHHHHHHHhCCCCC-CCCEEEECCCCchhHHHhHHHH
Q 010196 51 LFPVQVAVWQETIGPGLF-ERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~-~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
++|||..+|..+....-+ ...+++.+|.|.|||..+...+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a 42 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAA 42 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHH
Confidence 479999999887754222 2358899999999998765433
No 328
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.66 E-value=0.14 Score=53.36 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=16.4
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+.+|+.+|.|+|||..+.+.
T Consensus 39 Ha~Lf~GP~GvGKTTlAriL 58 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIARIL 58 (709)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 45899999999999876543
No 329
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.63 E-value=0.75 Score=45.79 Aligned_cols=60 Identities=20% Similarity=0.168 Sum_probs=32.8
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-c-ccHHHHHHHHHHHHHhccccCcEEEEee
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-L-PTRDLALQVKDVFAAIAPAVGLSVGLAV 136 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~-Pt~~L~~q~~~~~~~~~~~~~~~v~~~~ 136 (515)
-+++.+++|+|||.+..-.+.....+. +.+++++ + +.|.-+. +.++.++...++.+....
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~---g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~ 162 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQ---GKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALG 162 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhC---CCeEEEEeccccchHHH---HHHHHHHHhcCCceEecC
Confidence 477899999999998766554432221 2245554 3 3333332 234444444466555443
No 330
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.62 E-value=0.44 Score=47.02 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~ 89 (515)
.+.+++.+|.|+|||..+...
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~l 56 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAF 56 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHH
Confidence 456899999999999875543
No 331
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.62 E-value=0.12 Score=48.60 Aligned_cols=61 Identities=23% Similarity=0.292 Sum_probs=43.1
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.|..+++-|.+.+..+.. ...|+++++.||||||.. ++.+.......-+++.+=-|.+|.-
T Consensus 154 ~~gt~~~~~a~~L~~av~---~r~NILisGGTGSGKTTl-----LNal~~~i~~~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVG---IRCNILISGGTGSGKTTL-----LNALSGFIDSDERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHh---hceeEEEeCCCCCCHHHH-----HHHHHhcCCCcccEEEEeehhhhcc
Confidence 455799999888777654 347999999999999973 2333222223338888888888853
No 332
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.57 E-value=0.35 Score=47.01 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=33.1
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-c-ccH-HHHHHHHHHHHHhccccCcEEEEe
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-L-PTR-DLALQVKDVFAAIAPAVGLSVGLA 135 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~-Pt~-~L~~q~~~~~~~~~~~~~~~v~~~ 135 (515)
+.+.+.+|||+|||.+....+.... . .+.++.++ + |-| +-++| ++.++...++.+...
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~-~---~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFH-G---KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAV 302 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHH-H---cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEEec
Confidence 5688999999999998766554432 2 12345444 3 333 23334 334444446665544
No 333
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.57 E-value=0.4 Score=49.35 Aligned_cols=90 Identities=16% Similarity=0.259 Sum_probs=69.4
Q ss_pred HHHHHHH-hcCCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-cccc
Q 010196 322 YLVALLQ-SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRG 398 (515)
Q Consensus 322 ~l~~~l~-~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~~~G 398 (515)
.+...+. -..+.++.+..||.--|+.-+..+..+. +.++.+..+.|.+....|.++++...+|+++++|+|-+ +-..
T Consensus 300 A~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~ 379 (677)
T COG1200 300 ALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK 379 (677)
T ss_pred HHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc
Confidence 3344443 3357789999999766666655554432 34589999999999999999999999999999999965 4577
Q ss_pred CCCCCCCEEEEcc
Q 010196 399 MDVEGVNNVVNYD 411 (515)
Q Consensus 399 iDi~~v~~VI~~~ 411 (515)
+++.+.-+||.-.
T Consensus 380 V~F~~LgLVIiDE 392 (677)
T COG1200 380 VEFHNLGLVIIDE 392 (677)
T ss_pred eeecceeEEEEec
Confidence 8998888888643
No 334
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.53 E-value=0.98 Score=45.54 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=56.4
Q ss_pred CCcchhhHHHHHHHhCCCCCC------CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 49 SSLFPVQVAVWQETIGPGLFE------RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~------~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
..+-|||.-++..++.-...+ +-++|..|=+-|||..+...++..+.-....+....|++|+.+-+.+..+.++
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHhhHHHH
Confidence 368999999988776433222 33788999999999876633333332222556689999999999999888888
Q ss_pred Hhccc
Q 010196 123 AIAPA 127 (515)
Q Consensus 123 ~~~~~ 127 (515)
.....
T Consensus 140 ~mv~~ 144 (546)
T COG4626 140 DMVKR 144 (546)
T ss_pred HHHHh
Confidence 76543
No 335
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.50 E-value=0.058 Score=49.89 Aligned_cols=20 Identities=40% Similarity=0.547 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
...|+++.+|||||||+.+.
T Consensus 96 ~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeccEEEECCCCCcHHHHHH
Confidence 45789999999999998644
No 336
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=0.4 Score=48.98 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHH
Q 010196 71 DLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~ 88 (515)
-+++.+|.|+|||.++.+
T Consensus 38 a~Lf~GppGtGKTTlA~~ 55 (504)
T PRK14963 38 AYLFSGPRGVGKTTTARL 55 (504)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 359999999999987654
No 337
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.43 E-value=0.42 Score=46.26 Aligned_cols=26 Identities=27% Similarity=0.155 Sum_probs=19.7
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQT 93 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~ 93 (515)
.++.+++.+|+|+|||.+....+...
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l 230 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQL 230 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 35668899999999998766555443
No 338
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=93.42 E-value=0.33 Score=51.30 Aligned_cols=94 Identities=10% Similarity=0.106 Sum_probs=77.3
Q ss_pred ccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEe
Q 010196 314 CESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS 391 (515)
Q Consensus 314 ~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~ 391 (515)
...+.|.+.+..++... .+..+||.++.+.....+...++... +.++..+|+++++.+|.....+..+|+.+|+|+
T Consensus 225 vTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rF--g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIG 302 (730)
T COG1198 225 VTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARF--GAKVAVLHSGLSPGERYRVWRRARRGEARVVIG 302 (730)
T ss_pred CCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHh--CCChhhhcccCChHHHHHHHHHHhcCCceEEEE
Confidence 34567888888888754 56789999999999999999887654 378999999999999999999999999999999
Q ss_pred cCCccccCCCCCCCEEEEc
Q 010196 392 SDAMTRGMDVEGVNNVVNY 410 (515)
Q Consensus 392 T~~~~~GiDi~~v~~VI~~ 410 (515)
|..+- =.-++++..+|..
T Consensus 303 tRSAl-F~Pf~~LGLIIvD 320 (730)
T COG1198 303 TRSAL-FLPFKNLGLIIVD 320 (730)
T ss_pred echhh-cCchhhccEEEEe
Confidence 97643 3456677777754
No 339
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=93.38 E-value=0.52 Score=42.47 Aligned_cols=47 Identities=19% Similarity=0.079 Sum_probs=30.8
Q ss_pred HHHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 58 a~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
.+..++. .+..|.-+++.+++|+|||..++..+.+.... +.+++|+.
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~----g~~v~yi~ 54 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ----GKKVAYID 54 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEE
Confidence 3455554 34456778899999999999766555544332 33677773
No 340
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.35 E-value=0.24 Score=49.33 Aligned_cols=59 Identities=19% Similarity=0.241 Sum_probs=43.8
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH-HHHHHHHHHHHhccccCc
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD-LALQVKDVFAAIAPAVGL 130 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~ 130 (515)
-.++.+..|||||.+...-++..+... .++.+++++-|+.. |..-+...+......+++
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~-~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~ 62 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAIN-KKQQNILAARKVQNSIRDSVFKDIENLLSIEGI 62 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhc-CCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCC
Confidence 357899999999999888888777764 13457888888877 666777777776655444
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.29 E-value=0.22 Score=51.79 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.7
Q ss_pred CEEEECCCCchhHHHhHHH
Q 010196 71 DLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~ 89 (515)
-+++.||.|+|||.++.+.
T Consensus 40 a~Lf~Gp~GvGKTtlAr~l 58 (618)
T PRK14951 40 AYLFTGTRGVGKTTVSRIL 58 (618)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3689999999999976653
No 342
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=93.28 E-value=0.76 Score=44.27 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=29.2
Q ss_pred cchhhHHHHHHHhCCC-CCCCCEEEECCCCchhHHHhHHHH
Q 010196 51 LFPVQVAVWQETIGPG-LFERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~-~~~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
++|||...|..+.... .-..-+++.+|.|.||+..+...+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A 42 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLA 42 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHH
Confidence 4799999998877531 112458899999999998765433
No 343
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.22 E-value=0.18 Score=52.28 Aligned_cols=21 Identities=19% Similarity=0.156 Sum_probs=17.0
Q ss_pred CCEEEECCCCchhHHHhHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~ 90 (515)
..+|+.+|.|+|||.++.+.+
T Consensus 39 ha~Lf~GPpG~GKTtiArilA 59 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIFA 59 (624)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 458899999999999866543
No 344
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.18 E-value=0.31 Score=44.59 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.8
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.++++.+|+|.|||..+.+
T Consensus 53 DHvLl~GPPGlGKTTLA~I 71 (332)
T COG2255 53 DHVLLFGPPGLGKTTLAHI 71 (332)
T ss_pred CeEEeeCCCCCcHHHHHHH
Confidence 5799999999999976443
No 345
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.17 E-value=0.21 Score=51.66 Aligned_cols=19 Identities=32% Similarity=0.426 Sum_probs=15.7
Q ss_pred EEEECCCCchhHHHhHHHH
Q 010196 72 LCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~ 90 (515)
+++.+|.|+|||.++.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lA 56 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILA 56 (584)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 6899999999999766533
No 346
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=93.15 E-value=0.13 Score=53.33 Aligned_cols=73 Identities=18% Similarity=0.164 Sum_probs=51.6
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHH-HHHHHhcc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK-DVFAAIAP 126 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~~ 126 (515)
...+|+|.+.+..+-+.. =+.+.+..++-+|||.+.+..+...+...+ ..++++.||..++.++. +.+..+..
T Consensus 15 ~~~~Py~~eimd~~~~~~--v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P---~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 15 TDRTPYLREIMDALSDPS--VREVVVMKSAQVGKTELLLNWIGYSIDQDP---GPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCCChhHHHHHHhcCCcC--ccEEEEEEcchhhHhHHHHhhceEEEEeCC---CCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 367899999876654321 367999999999999965554444444322 35999999999999876 46666543
No 347
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=93.14 E-value=0.47 Score=51.41 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=17.3
Q ss_pred CCEEEECCCCchhHHHhHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
+-+|+.+|.|+|||.++.+.+-
T Consensus 38 Ha~Lf~Gp~G~GKTt~A~~lAr 59 (824)
T PRK07764 38 HAYLFSGPRGCGKTSSARILAR 59 (824)
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999998765443
No 348
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.45 Score=47.29 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.3
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
..+++.+|.|+|||.++.+.
T Consensus 39 ha~lf~Gp~G~GKtt~A~~~ 58 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAARVF 58 (397)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 34889999999999876553
No 349
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.13 E-value=0.14 Score=50.80 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=30.2
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~ 97 (515)
+.+.|.+.+..++.. ...=+++.+|||||||.+ +..++..+...
T Consensus 242 ~~~~~~~~~~~~~~~--p~GliLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 242 MSPFQLARLLRLLNR--PQGLILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred CCHHHHHHHHHHHhC--CCeEEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 467777777666541 123477899999999986 55566666553
No 350
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.12 E-value=0.47 Score=53.46 Aligned_cols=79 Identities=11% Similarity=0.230 Sum_probs=64.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-ccccCCCCCCCEEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~~~GiDi~~v~~VI 408 (515)
.+.+++|.+||+..+..+++.+... ...++.+..+++..+..++.++++..++|.++|+|+|.. +...+++.++.++|
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLV 727 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLI 727 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEE
Confidence 4678999999999999999988753 334577888999999999999999999999999999964 34456677788877
Q ss_pred E
Q 010196 409 N 409 (515)
Q Consensus 409 ~ 409 (515)
.
T Consensus 728 I 728 (1147)
T PRK10689 728 V 728 (1147)
T ss_pred E
Confidence 5
No 351
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.12 E-value=0.59 Score=49.91 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.0
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.++++.+|+|+|||..+..
T Consensus 53 ~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 53 GSLILYGPPGVGKTTLARI 71 (725)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999986543
No 352
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=93.09 E-value=0.44 Score=46.06 Aligned_cols=19 Identities=26% Similarity=0.317 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
..++++.+|+|+|||..+.
T Consensus 51 ~~~~ll~GppG~GKT~la~ 69 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLAN 69 (328)
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 4679999999999998654
No 353
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.04 E-value=0.26 Score=43.17 Aligned_cols=39 Identities=31% Similarity=0.381 Sum_probs=28.7
Q ss_pred HHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHh
Q 010196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 43 l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~ 86 (515)
|-+.|+ +.+-|.+.+...+. .+..+++.+|||||||...
T Consensus 4 l~~~g~--~~~~~~~~l~~~v~---~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 4 LIAQGT--FSPLQAAYLWLAVE---ARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHcCC--CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHHH
Confidence 334453 66777777766554 5889999999999999753
No 354
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.02 E-value=0.66 Score=47.97 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=43.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
.+-.++..|==.|||.... +++..+... ..+.++++.+|.+..++.+++++...+.
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s-~~Gi~IgytAH~~~ts~~vF~eI~~~le 309 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALAT-FRGIKIGYTAHIRKATEPVFEEIGARLR 309 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHh-CCCCEEEEEcCcHHHHHHHHHHHHHHHh
Confidence 4667888899999998654 555544432 3467899999999999999999988755
No 355
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.99 E-value=0.13 Score=53.24 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~ 89 (515)
++-+|+.||.|+|||.++-+.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~l 58 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIF 58 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHH
Confidence 345788999999999876543
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.98 E-value=0.51 Score=50.10 Aligned_cols=63 Identities=16% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc-ccHHHHHHHHHHHHHhccccCcEEEEe
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PTRDLALQVKDVFAAIAPAVGLSVGLA 135 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~-Pt~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (515)
++-+.+.+|||+|||.+....+....... ...++.+++ .+--.+ ..+.++.+....++.+...
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~--G~kkV~lit~Dt~Rig--A~eQL~~~a~~~gvpv~~~ 248 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE--GADQLALLTTDSFRIG--ALEQLRIYGRILGVPVHAV 248 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc--CCCeEEEecCcccchH--HHHHHHHHHHhCCCCcccc
Confidence 44578999999999988665554332221 111344443 332211 2344555555556655443
No 357
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.96 E-value=0.84 Score=43.73 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHh
Q 010196 70 RDLCINSPTGSGKTLSY 86 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~ 86 (515)
+.+++.+|+|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 78999999999999853
No 358
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.96 E-value=0.41 Score=49.92 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
+.+|+.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKtt~A~~ 57 (576)
T PRK14965 39 HAFLFTGARGVGKTSTARI 57 (576)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3468999999999997654
No 359
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.85 E-value=0.69 Score=46.61 Aligned_cols=63 Identities=14% Similarity=0.206 Sum_probs=33.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-cccHHHHHHHHHHHHHhccccCcEEEEe
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLA 135 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~Pt~~L~~q~~~~~~~~~~~~~~~v~~~ 135 (515)
+.-+.+.+|||+|||.+....+.....+.+ ..++.++ +-+-.+. ..+.++.|+...++.+...
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G--~~kV~LI~~Dt~Rig--A~EQLr~~AeilGVpv~~~ 319 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHG--ASKVALLTTDSYRIG--GHEQLRIYGKILGVPVHAV 319 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcC--CCeEEEEeCCccchh--HHHHHHHHHHHhCCCeecc
Confidence 455889999999999987665544433321 1133333 3332121 2444555555455554433
No 360
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.82 E-value=0.29 Score=44.93 Aligned_cols=20 Identities=25% Similarity=0.032 Sum_probs=17.4
Q ss_pred CCCCCCEEEECCCCchhHHH
Q 010196 66 GLFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~ 85 (515)
+-.|+.+++.+|.|+|||..
T Consensus 13 i~~Gqr~~I~G~~G~GKTTL 32 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTL 32 (249)
T ss_pred cCCCCEEEEECCCCCCHHHH
Confidence 45789999999999999963
No 361
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.76 E-value=0.21 Score=52.30 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.1
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+.+|+.||.|+|||.++.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA~~l 58 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTARIL 58 (585)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 44689999999999976543
No 362
>PRK04195 replication factor C large subunit; Provisional
Probab=92.75 E-value=0.48 Score=48.48 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.||+|+|||..+.
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5689999999999998644
No 363
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=92.62 E-value=0.62 Score=46.50 Aligned_cols=57 Identities=23% Similarity=0.259 Sum_probs=31.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc-cc-HHHHHHHHHHHHHhccccCcEEE
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-PT-RDLALQVKDVFAAIAPAVGLSVG 133 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~-Pt-~~L~~q~~~~~~~~~~~~~~~v~ 133 (515)
..+++.+++|+|||.+....+. ++.+. +.+++++. .+ +.- ..+.++.++...++.+.
T Consensus 96 ~vI~lvG~~GsGKTTtaakLA~-~L~~~---g~kV~lV~~D~~R~a---a~eQL~~la~~~gvp~~ 154 (437)
T PRK00771 96 QTIMLVGLQGSGKTTTAAKLAR-YFKKK---GLKVGLVAADTYRPA---AYDQLKQLAEKIGVPFY 154 (437)
T ss_pred eEEEEECCCCCcHHHHHHHHHH-HHHHc---CCeEEEecCCCCCHH---HHHHHHHHHHHcCCcEE
Confidence 4578899999999998765443 34332 23455553 32 332 23334444444455543
No 364
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.62 E-value=0.14 Score=47.06 Aligned_cols=27 Identities=22% Similarity=0.481 Sum_probs=21.7
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcc
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRA 98 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~ 98 (515)
=+++.+|||||||.+ +..++.++.+..
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 378899999999986 566888887753
No 365
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=92.59 E-value=1.1 Score=41.96 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=22.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+-+++.+|+|+|||.+..-.+... .. .+.+++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~---~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK---QGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh---cCCEEEEEe
Confidence 447788999999999876655433 22 233566554
No 366
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.42 E-value=1.7 Score=37.42 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=15.5
Q ss_pred EEEECCCCchhHHHhHHHHH
Q 010196 72 LCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~ 91 (515)
+++.+++|+|||......+.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~ 22 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLAL 22 (173)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 57899999999997654443
No 367
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=92.38 E-value=0.11 Score=48.31 Aligned_cols=37 Identities=16% Similarity=0.047 Sum_probs=27.5
Q ss_pred chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHH
Q 010196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~ 88 (515)
++..++....++..+..+.++++.+|+|+|||..+..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 4555555555555556789999999999999997543
No 368
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=92.34 E-value=0.15 Score=52.83 Aligned_cols=64 Identities=23% Similarity=0.412 Sum_probs=50.4
Q ss_pred HHHHHHhcCCceEEEecCCccccCCCCCCCEE--------EEccCCCChhhhHHhhhhcccCCCC-ccEEEEe
Q 010196 376 KTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------VNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL 439 (515)
Q Consensus 376 ~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~V--------I~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~ 439 (515)
+--++|.+|+..|-|-+.+++-||-+..-..| |-+.+|||.+.-+|..||++|.++- +--++|+
T Consensus 848 ~EKqrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFl 920 (1300)
T KOG1513|consen 848 REKQRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFL 920 (1300)
T ss_pred HHHhhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEE
Confidence 33467999999998999999999999865544 4477999999999999999999765 3334443
No 369
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=92.32 E-value=0.79 Score=43.74 Aligned_cols=18 Identities=33% Similarity=0.418 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.+|+|+|||..+.
T Consensus 31 ~~~ll~Gp~G~GKT~la~ 48 (305)
T TIGR00635 31 DHLLLYGPPGLGKTTLAH 48 (305)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 569999999999997543
No 370
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=92.29 E-value=1.8 Score=37.94 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
...+++.+|.|+|||..+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~ 33 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALA 33 (188)
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35688999999999986544
No 371
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.28 E-value=0.12 Score=51.25 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=36.3
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
++++.||||||||.++++|-+-.. ...++|+-|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~------~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW------PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC------CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988866322 236888889989887666555543
No 372
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=92.23 E-value=0.29 Score=50.50 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.3
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+.+++.||.|+|||..+...
T Consensus 39 hA~Lf~GP~GvGKTTlA~~l 58 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIF 58 (605)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 45889999999999876543
No 373
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.19 E-value=0.52 Score=49.28 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.4
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
...|+.||.|+|||.++.+.
T Consensus 39 ha~Lf~Gp~GvGKttlA~~l 58 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAARVF 58 (620)
T ss_pred eeEEEECCCCCCHHHHHHHH
Confidence 44889999999999976543
No 374
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=92.18 E-value=0.4 Score=45.63 Aligned_cols=39 Identities=26% Similarity=0.226 Sum_probs=30.2
Q ss_pred CcchhhHHHHHHHhCCCCCC---CCEEEECCCCchhHHHhHH
Q 010196 50 SLFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~---~~~ii~a~TGsGKT~~~~~ 88 (515)
.++|||...|..+...+..+ .-.++.+|.|.||+..+..
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~ 44 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVEL 44 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHH
Confidence 57899999998877654444 3588999999999976544
No 375
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.12 E-value=0.7 Score=47.62 Aligned_cols=20 Identities=20% Similarity=0.215 Sum_probs=15.8
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+-+++.||.|+|||.++.+.
T Consensus 39 ha~Lf~Gp~G~GKTt~A~~l 58 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLARIL 58 (527)
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 34689999999999876543
No 376
>PRK12608 transcription termination factor Rho; Provisional
Probab=91.88 E-value=0.6 Score=45.14 Aligned_cols=42 Identities=17% Similarity=0.074 Sum_probs=28.4
Q ss_pred hhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
++-.+++..+++ +-.|+..+|.||.|+|||..... +.+.+..
T Consensus 118 ~~~~RvID~l~P-iGkGQR~LIvG~pGtGKTTLl~~-la~~i~~ 159 (380)
T PRK12608 118 DLSMRVVDLVAP-IGKGQRGLIVAPPRAGKTVLLQQ-IAAAVAA 159 (380)
T ss_pred chhHhhhhheee-cCCCceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 555567666554 34789999999999999986433 4444433
No 377
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=91.84 E-value=0.71 Score=45.73 Aligned_cols=67 Identities=18% Similarity=0.147 Sum_probs=37.7
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeec
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG 137 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g 137 (515)
.+.-+.+.+|||+|||.+....+-..+.... .....++.+.+...+ ..+.+..++..+++.+.....
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rig--alEQL~~~a~ilGvp~~~v~~ 256 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIG--GHEQLRIYGKLLGVSVRSIKD 256 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchh--HHHHHHHHHHHcCCceecCCC
Confidence 3566889999999999986654443332221 112345555554433 233455555555666655443
No 378
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.74 E-value=0.21 Score=48.16 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=29.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
.+.++++++|||||||.. +-.++..+. ...+++.+=.+.||.
T Consensus 161 ~~~nilI~G~tGSGKTTl-l~aLl~~i~----~~~rivtiEd~~El~ 202 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTM-SKTLISAIP----PQERLITIEDTLELV 202 (344)
T ss_pred cCCeEEEECCCCccHHHH-HHHHHcccC----CCCCEEEECCCcccc
Confidence 578999999999999974 444444432 233677777777763
No 379
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=91.62 E-value=0.23 Score=51.67 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=39.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.++++.||||||||..+++|-+-... .-++|+-|--++........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~~------~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFWE------DSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhCC------CCEEEEeCcHHHHHHHHHHHHHC
Confidence 57999999999999999999875431 25888889999988777766664
No 380
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=91.56 E-value=1.6 Score=35.02 Aligned_cols=55 Identities=16% Similarity=0.210 Sum_probs=32.8
Q ss_pred CCCEE--EECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-----cccHHHHHHHHHHHHHh
Q 010196 69 ERDLC--INSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-----LPTRDLALQVKDVFAAI 124 (515)
Q Consensus 69 ~~~~i--i~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-----~Pt~~L~~q~~~~~~~~ 124 (515)
.+.++ +.++||+|||.+.-+. .+.+........-+... .|....+.+-.++++++
T Consensus 51 ~KpLVlSfHG~tGtGKn~v~~li-A~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~ 112 (127)
T PF06309_consen 51 RKPLVLSFHGWTGTGKNFVSRLI-AEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSW 112 (127)
T ss_pred CCCEEEEeecCCCCcHHHHHHHH-HHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHH
Confidence 34444 7999999999987774 44444443444334333 45555565555555554
No 381
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.53 E-value=0.41 Score=44.44 Aligned_cols=40 Identities=20% Similarity=0.022 Sum_probs=28.4
Q ss_pred CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 65 PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
.+..|.-++|.+++|+|||..++-.+.+.+.+ +.+++|++
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~----Ge~vlyis 71 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASR----GNPVLFVT 71 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhC----CCcEEEEE
Confidence 34456779999999999999766555544433 34688886
No 382
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.49 E-value=0.54 Score=53.65 Aligned_cols=115 Identities=12% Similarity=0.128 Sum_probs=67.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (515)
.++++|.|+-|||||.+..--++..+..+. ....+++|+-|+.=+.++.+.+.+.+..... ..+.........+
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~~-~~~~i~~~t~t~~aa~em~~Ri~~~L~~~~~-----~~~~~l~~~l~~~ 83 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNGV-PPSKILCLTYTKAAAAEMQNRVFDRLGEWAV-----LDDAELRARLEAL 83 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcCC-CCCeEEEEecCHHHHHHHHHHHHHHHHHHhc-----CChHHHHHHHHHh
Confidence 578999999999999987776776666543 3447999999999999988887766542110 0011111111111
Q ss_pred hccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhc
Q 010196 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (515)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 189 (515)
.................++.+.....+-|.|.+.|...+.+
T Consensus 84 ~~~~~~~~~l~~ar~l~~~~l~~~~~l~I~Ti~sf~~~l~r 124 (1141)
T TIGR02784 84 EGKRPDAAKLAEARRLFARALETPGGLKIQTIHAFCESLLH 124 (1141)
T ss_pred cCCCCChHHHHHHHHHHHHHHhCCCCceEeeHHHHHHHHHH
Confidence 00000000000011223344555667889999998776654
No 383
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=91.48 E-value=0.22 Score=50.85 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=37.9
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.++++.||||||||..+++|.+- .. ++ .++|.-|--+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll--~~---~~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL--NY---PG-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH--hc---cC-CEEEEECCCcHHHHHHHHHHHC
Confidence 47999999999999999988762 22 12 5788889999887777666655
No 384
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=91.48 E-value=0.5 Score=45.85 Aligned_cols=40 Identities=13% Similarity=0.014 Sum_probs=24.0
Q ss_pred hHHHHHHHhCCCCCCC---CEEEECCCCchhHHHhHHHHHHHhh
Q 010196 55 QVAVWQETIGPGLFER---DLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 55 Q~~a~~~~~~~~~~~~---~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
|.++...+...+.+|+ -+++.+|.|+|||..+.. +...+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~-lA~~Ll 70 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFH-LANHIL 70 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHH-HHHHHc
Confidence 3444444443333443 589999999999986543 333443
No 385
>PF12846 AAA_10: AAA-like domain
Probab=91.43 E-value=0.32 Score=46.22 Aligned_cols=42 Identities=26% Similarity=0.231 Sum_probs=29.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.++++.|+||+|||......+.+.+.. +..++++=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~~----g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIRR----GPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHc----CCCEEEEcCCchHHH
Confidence 588999999999998766434333333 346888877755544
No 386
>PRK04328 hypothetical protein; Provisional
Probab=91.42 E-value=0.41 Score=44.15 Aligned_cols=62 Identities=13% Similarity=0.067 Sum_probs=38.7
Q ss_pred HHHHhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 59 ~~~~~~~-~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+..++.. +..|..+++.+++|+|||..++-.+.+.+.+ +..++|++ +.+-..++.+.++.+.
T Consensus 12 LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~----ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 12 MDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQM----GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred HHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc----CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 3444433 3357889999999999998655555555544 33677776 3344455666666553
No 387
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=91.40 E-value=1.3 Score=44.77 Aligned_cols=75 Identities=15% Similarity=0.162 Sum_probs=56.8
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~ 178 (515)
...++||.|-|+.-|+++...++.. ++++..++|+.+..+....+ ..++ ..+.|+||
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L------------------~~FreG~~~vLVA 397 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVL------------------KGFREGKSPVLVA 397 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHH------------------HhcccCCcceEEE
Confidence 4558999999999999998888875 47889999999877664433 2233 45899999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEE
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
|- .. .+.+++.++++||-
T Consensus 398 Td-----VA--aRGLDi~dV~lVIn 415 (519)
T KOG0331|consen 398 TD-----VA--ARGLDVPDVDLVIN 415 (519)
T ss_pred cc-----cc--cccCCCccccEEEe
Confidence 92 22 25688889999984
No 388
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.38 E-value=0.54 Score=49.33 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=16.9
Q ss_pred CCCEEEECCCCchhHHHhHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~ 89 (515)
...+|+.||.|+|||.++...
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~~l 58 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSARIL 58 (620)
T ss_pred CceEEEECCCCCChHHHHHHH
Confidence 356899999999999876543
No 389
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.38 E-value=0.96 Score=49.70 Aligned_cols=85 Identities=16% Similarity=0.260 Sum_probs=68.0
Q ss_pred cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEe
Q 010196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (515)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~ 178 (515)
.+++++.||.|..+-..++.+.++.+.|. .++++.+|.....+...- +.....+.+||+||
T Consensus 801 ~RgGQvfYv~NrV~~Ie~~~~~L~~LVPE--arI~vaHGQM~e~eLE~v-----------------M~~F~~g~~dVLv~ 861 (1139)
T COG1197 801 LRGGQVFYVHNRVESIEKKAERLRELVPE--ARIAVAHGQMRERELEEV-----------------MLDFYNGEYDVLVC 861 (1139)
T ss_pred hcCCEEEEEecchhhHHHHHHHHHHhCCc--eEEEEeecCCCHHHHHHH-----------------HHHHHcCCCCEEEE
Confidence 35679999999999999999999999985 679999999987665322 22445667999999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
|- .++ .+++..+.+.+||+-||++
T Consensus 862 TT-----IIE--tGIDIPnANTiIIe~AD~f 885 (1139)
T COG1197 862 TT-----IIE--TGIDIPNANTIIIERADKF 885 (1139)
T ss_pred ee-----eee--cCcCCCCCceEEEeccccc
Confidence 92 223 3478889999999999987
No 390
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=91.33 E-value=0.89 Score=43.69 Aligned_cols=18 Identities=33% Similarity=0.512 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.||+|+|||.++.
T Consensus 39 ~~~ll~G~~G~GKt~~~~ 56 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAAL 56 (319)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999998644
No 391
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.29 E-value=0.39 Score=44.09 Aligned_cols=45 Identities=13% Similarity=-0.079 Sum_probs=31.0
Q ss_pred HHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 61 ETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 61 ~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+++..+..|.-++|.|++|+|||...+-.+.+.+... +..++|++
T Consensus 5 ~~~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~---g~~vly~s 49 (242)
T cd00984 5 NLTGGLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ---GKPVLFFS 49 (242)
T ss_pred hhhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCceEEEe
Confidence 3455556678899999999999986555455544441 34688886
No 392
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=91.29 E-value=0.97 Score=41.98 Aligned_cols=48 Identities=17% Similarity=-0.005 Sum_probs=32.4
Q ss_pred HHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 59 ~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
+..++..+..|.=+++.|.||.|||..++-.+.+.+... +..++|++.
T Consensus 9 LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~---~~~vly~Sl 56 (259)
T PF03796_consen 9 LDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAALNG---GYPVLYFSL 56 (259)
T ss_dssp HHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT---SSEEEEEES
T ss_pred HHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHHhc---CCeEEEEcC
Confidence 444555555667789999999999997666666665542 246888864
No 393
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.19 E-value=0.2 Score=48.17 Aligned_cols=41 Identities=20% Similarity=0.307 Sum_probs=27.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
.+.+++++++||||||.. +-.++..+.. ..+++.+=-+.||
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~----~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPA----IERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCC----CCeEEEecCCCcc
Confidence 578999999999999974 4445554433 2356665455555
No 394
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=0.35 Score=50.08 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.8
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
+-+++.||.|+|||.++.+
T Consensus 39 hayLf~Gp~G~GKTt~Ar~ 57 (563)
T PRK06647 39 NAYIFSGPRGVGKTSSARA 57 (563)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4478999999999987654
No 395
>PF10593 Z1: Z1 domain; InterPro: IPR018310 This entry represents the Z1 domain of unknown function that is found in a group of putative endonucleases. This domain is found associated with a helicase domain of superfamily type II [].
Probab=91.13 E-value=0.91 Score=41.35 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=65.4
Q ss_pred eeEEEccCccCHHHHHHHHHHHhcCC----ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhh-cc-cCCCCc
Q 010196 360 IKIKEYSGLQRQSVRSKTLKAFREGK----IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGR-TA-RAGQLG 433 (515)
Q Consensus 360 ~~v~~~~~~~~~~~r~~~l~~f~~g~----~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR-~g-R~g~~g 433 (515)
+.+..++++.+... -.|.++. ..|+|+-+.++||+-++++.+.....-+...+++.|| || .| |.|-.+
T Consensus 111 ~~v~~vNS~~~~~~-----ldy~~~~~~~~~~I~VGGn~LsRGlTleGL~vsYf~R~s~~~DTL~Qm-gRwFGYR~gY~d 184 (239)
T PF10593_consen 111 IEVVVVNSGSSDDS-----LDYDDGENLGLNVIAVGGNKLSRGLTLEGLTVSYFLRNSKQYDTLMQM-GRWFGYRPGYED 184 (239)
T ss_pred ceEEEEeCCCcccc-----ccccccccCCceEEEECCccccCceeECCcEEEEecCCCchHHHHHHH-hhcccCCccccc
Confidence 66777776554422 2333333 7899999999999999999999999999999999998 45 33 566667
Q ss_pred cEEEEeechhHHHHHHHHHH
Q 010196 434 RCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 434 ~~~~~~~~~d~~~~~~~~~~ 453 (515)
.|-+|.++.-...+..+.+.
T Consensus 185 l~Ri~~~~~l~~~f~~i~~~ 204 (239)
T PF10593_consen 185 LCRIYMPEELYDWFRHIAEA 204 (239)
T ss_pred ceEEecCHHHHHHHHHHHHH
Confidence 88899888777777666443
No 396
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=91.13 E-value=1.3 Score=43.21 Aligned_cols=37 Identities=16% Similarity=0.008 Sum_probs=22.8
Q ss_pred hhHHHHHHHhCCCCCC---CCEEEECCCCchhHHHhHHHH
Q 010196 54 VQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 54 ~Q~~a~~~~~~~~~~~---~~~ii~a~TGsGKT~~~~~~~ 90 (515)
.|.++...+...+..+ .-.++.+|.|+||+..+...+
T Consensus 23 Gq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A 62 (365)
T PRK07471 23 GHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMA 62 (365)
T ss_pred ChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHH
Confidence 3455544433333333 458999999999998755433
No 397
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.07 E-value=4.4 Score=38.81 Aligned_cols=36 Identities=14% Similarity=0.110 Sum_probs=22.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+.-+.+.+|+|+|||.+....+.. +.. .+.+++++.
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~-l~~---~g~~V~Li~ 149 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHK-YKA---QGKKVLLAA 149 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHh---cCCeEEEEe
Confidence 345778999999999876543332 222 233566653
No 398
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=91.04 E-value=0.85 Score=46.96 Aligned_cols=71 Identities=18% Similarity=0.408 Sum_probs=56.5
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-----Ccccc-CCCCCCCE
Q 010196 335 CIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEGVNN 406 (515)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-----~~~~G-iDi~~v~~ 406 (515)
+||+++|++.|..+++.+..++.. ++.+..+.|+++...+. +.++.| .+|||+|+ .+.+| +|+..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~---~~l~~~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQI---EALKRG-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHH---HHHhcC-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999998776542 47788999999876655 444456 99999997 35555 88888888
Q ss_pred EEE
Q 010196 407 VVN 409 (515)
Q Consensus 407 VI~ 409 (515)
+|.
T Consensus 178 lVl 180 (513)
T COG0513 178 LVL 180 (513)
T ss_pred EEe
Confidence 875
No 399
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.96 E-value=1 Score=44.26 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
+.+++.||.|+|||..+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999997644
No 400
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.86 E-value=1.2 Score=42.92 Aligned_cols=23 Identities=26% Similarity=0.222 Sum_probs=17.7
Q ss_pred CCC-EEEECCCCchhHHHhHHHHH
Q 010196 69 ERD-LCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 69 ~~~-~ii~a~TGsGKT~~~~~~~~ 91 (515)
..+ +++.+|.|+|||.++...+-
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~ 46 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAK 46 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHH
Confidence 455 99999999999997654333
No 401
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.85 E-value=0.67 Score=42.10 Aligned_cols=61 Identities=13% Similarity=0.045 Sum_probs=36.3
Q ss_pred HHHHh-CCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 59 WQETI-GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 59 ~~~~~-~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+..++ ..+..|..+++.+++|+|||..+...+.+.+.. +..++++.- .+...++.+..+.+
T Consensus 9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~----g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD----GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 34444 344567889999999999998655444444433 235667653 23344554444443
No 402
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=90.78 E-value=0.91 Score=44.41 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
++.+++.||.|+|||..+.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~ 54 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIAR 54 (355)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999997644
No 403
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.70 E-value=0.75 Score=41.65 Aligned_cols=54 Identities=15% Similarity=0.013 Sum_probs=36.4
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+..|.-+++.+++|+|||..++-.+.+.+.+ +..++|++.. +-.+++.+.+..+
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~----g~~~~y~s~e-~~~~~l~~~~~~~ 66 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKN----GEKAMYISLE-EREERILGYAKSK 66 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC-CCHHHHHHHHHHc
Confidence 3457788999999999998655555554443 3367787654 3456666666655
No 404
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.67 E-value=0.57 Score=43.53 Aligned_cols=48 Identities=23% Similarity=0.452 Sum_probs=31.3
Q ss_pred HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
.|.++|+ .+.|.+.+..++. ..+..+++.+|||||||.. +..++..+.
T Consensus 58 ~l~~lg~---~~~~~~~l~~~~~--~~~GlilisG~tGSGKTT~-l~all~~i~ 105 (264)
T cd01129 58 DLEKLGL---KPENLEIFRKLLE--KPHGIILVTGPTGSGKTTT-LYSALSELN 105 (264)
T ss_pred CHHHcCC---CHHHHHHHHHHHh--cCCCEEEEECCCCCcHHHH-HHHHHhhhC
Confidence 4566664 5667777665543 2245689999999999985 344555443
No 405
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=90.67 E-value=0.48 Score=43.85 Aligned_cols=38 Identities=24% Similarity=0.360 Sum_probs=25.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcc---cCcccEEEEcccHHHH
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTRDLA 114 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt~~L~ 114 (515)
.+|.+|||+||+-. +..|.... ...-.|++++|+...+
T Consensus 90 ~~VYGPTG~GKSqL-----lRNLis~~lI~P~PETVfFItP~~~mI 130 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL-----LRNLISCQLIQPPPETVFFITPQKDMI 130 (369)
T ss_pred EEEECCCCCCHHHH-----HHHhhhcCcccCCCCceEEECCCCCCC
Confidence 67899999999973 33333321 2233689999987653
No 406
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=90.66 E-value=0.64 Score=49.75 Aligned_cols=71 Identities=20% Similarity=0.175 Sum_probs=56.5
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
.+++-|.+|+... ...++|.|..|||||.+..--+...+.........++.++=|+.-|.++.+.+..+..
T Consensus 2 ~Ln~~Q~~av~~~------~gp~lV~AGaGsGKT~vlt~Ria~li~~~~v~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP------DGPLLVLAGAGSGKTRVLTERIAYLIAAGGVDPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC------CCCeEEEECCCCCchhhHHHHHHHHHHcCCcChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 5789999996543 5678999999999999876666666666445555789999899999999999998875
No 407
>PRK14701 reverse gyrase; Provisional
Probab=90.66 E-value=0.97 Score=52.73 Aligned_cols=64 Identities=17% Similarity=0.367 Sum_probs=55.5
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC---CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE---LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~---~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
.+.+++|.+||+..+..+.+.|+.+.. .++.+..+||+++..++.++++.+++|+.+|||+|+-
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg 187 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ 187 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc
Confidence 456899999999999999999877542 3467889999999999999999999999999999974
No 408
>PHA02244 ATPase-like protein
Probab=90.66 E-value=0.22 Score=47.91 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=18.3
Q ss_pred CCCCCCEEEECCCCchhHHHhH
Q 010196 66 GLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+.++++.+|||+|||..+.
T Consensus 116 l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 116 VNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HhcCCCEEEECCCCCCHHHHHH
Confidence 3468899999999999997543
No 409
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.60 E-value=0.56 Score=43.60 Aligned_cols=56 Identities=14% Similarity=0.037 Sum_probs=38.5
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
+..|+.+++.+++|+|||...+-.+.+.+.. +-++++++-. +...++.+.+..+..
T Consensus 20 ~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~----ge~vlyvs~~-e~~~~l~~~~~~~g~ 75 (260)
T COG0467 20 LPRGSVVLITGPPGTGKTIFALQFLYEGARE----GEPVLYVSTE-ESPEELLENARSFGW 75 (260)
T ss_pred CcCCcEEEEEcCCCCcHHHHHHHHHHHHHhc----CCcEEEEEec-CCHHHHHHHHHHcCC
Confidence 4467889999999999999755555544443 3467777654 556667777766543
No 410
>CHL00095 clpC Clp protease ATP binding subunit
Probab=90.57 E-value=0.35 Score=52.95 Aligned_cols=38 Identities=18% Similarity=-0.003 Sum_probs=25.6
Q ss_pred cchhhHHHHHHHhCCCCC--------C---CCEEEECCCCchhHHHhHH
Q 010196 51 LFPVQVAVWQETIGPGLF--------E---RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~--------~---~~~ii~a~TGsGKT~~~~~ 88 (515)
--..|..|+..+...+.. + ..+++.+|||+|||..+-.
T Consensus 510 ~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~ 558 (821)
T CHL00095 510 RIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKA 558 (821)
T ss_pred cCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHH
Confidence 345788887776543321 1 1378999999999986543
No 411
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=90.50 E-value=1.6 Score=44.73 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.4
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
+-.++.||.|+|||.++..
T Consensus 37 hayLf~Gp~G~GKTt~Ar~ 55 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSARI 55 (535)
T ss_pred eeEEEECCCCCcHHHHHHH
Confidence 3458999999999987554
No 412
>PHA00350 putative assembly protein
Probab=90.43 E-value=0.54 Score=46.01 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=18.1
Q ss_pred EEEECCCCchhHHHhHH-HHHHHhhh
Q 010196 72 LCINSPTGSGKTLSYAL-PIVQTLSN 96 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~-~~~~~l~~ 96 (515)
.++.+..|||||+.++. -++..+.+
T Consensus 4 ~l~tG~pGSGKT~~aV~~~i~palk~ 29 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVVYHIIPALKD 29 (399)
T ss_pred EEEecCCCCchhHHHHHHHHHHHHHC
Confidence 57899999999998665 34445444
No 413
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.34 E-value=1.9 Score=46.72 Aligned_cols=39 Identities=15% Similarity=-0.028 Sum_probs=26.0
Q ss_pred CcchhhHHHHHHHhCCCC--CCCCEEEECCCCchhHHHhHH
Q 010196 50 SLFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~--~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.|--.|.+-+..++..+. ...|+++.+|+|+|||..+-.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~ 222 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEG 222 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHH
Confidence 344456655555554322 347899999999999987544
No 414
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=90.30 E-value=0.66 Score=42.14 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=33.8
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..+.-+++.+++|+|||..++-.+...+.+ +.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~----g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN----GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC----CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 357789999999999998754444443333 3467888744 3334555555544
No 415
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.28 E-value=2.2 Score=36.56 Aligned_cols=45 Identities=9% Similarity=0.005 Sum_probs=29.9
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
++|.+++|||||..+.-.+. . .+.+++|+.....+-..+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~----~---~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAA----E---LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHH----h---cCCCeEEEEccCcCCHHHHHHHHH
Confidence 57899999999986443332 2 233688887776665555555544
No 416
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=90.23 E-value=0.58 Score=53.08 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhc-ccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
.+.+++|.|..|||||.+...-++..+..+ +..-..+|+++-|++=+..+...+.+-.
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L 73 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRL 73 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHH
Confidence 478999999999999999888888888775 3455689999999998888877776544
No 417
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=0.53 Score=48.66 Aligned_cols=52 Identities=19% Similarity=0.339 Sum_probs=34.1
Q ss_pred cEEE-eCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCc
Q 010196 174 DILV-ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDN 229 (515)
Q Consensus 174 ~Ivv-~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~ 229 (515)
.-+| +-||++.+.+.+-+.- +. ++.+||+|.+.....++--..+++.+.+..
T Consensus 485 RTYVGAMPGkiIq~LK~v~t~---NP-liLiDEvDKlG~g~qGDPasALLElLDPEQ 537 (906)
T KOG2004|consen 485 RTYVGAMPGKIIQCLKKVKTE---NP-LILIDEVDKLGSGHQGDPASALLELLDPEQ 537 (906)
T ss_pred eeeeccCChHHHHHHHhhCCC---Cc-eEEeehhhhhCCCCCCChHHHHHHhcChhh
Confidence 3334 4599999999763322 22 788999999875444555666666665443
No 418
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.98 E-value=0.84 Score=44.08 Aligned_cols=64 Identities=20% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 40 ~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++.+.+.|+ +.+.+.+.+..++. .+.++++.++||+|||.. +-.++..+. ...+++++-.+.||
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~---~~~~ili~G~tGsGKTTl-l~al~~~i~----~~~riv~iEd~~El 217 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVA---ARLAFLISGGTGSGKTTL-LSALLALVA----PDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHh---CCCeEEEECCCCCCHHHH-HHHHHccCC----CCCcEEEECCccee
Confidence 444455565 55666666655543 468999999999999974 333333332 23356676666666
No 419
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=89.93 E-value=0.42 Score=50.41 Aligned_cols=50 Identities=16% Similarity=0.167 Sum_probs=38.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..++++.||||||||..+++|-+-... ..++|+=|--++........++.
T Consensus 139 ~~hvlviApTgSGKgvg~VIPnLL~~~------gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 139 QPHSLVVAPTRAGKGVGVVIPTLLTFK------GSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred CceEEEEecCCCCceeeehHhHHhcCC------CCEEEEeCCchHHHHHHHHHHhC
Confidence 358999999999999999998764321 25888889988877666555543
No 420
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=89.83 E-value=2 Score=41.05 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
....++.||.|+||+..+..
T Consensus 26 ~ha~Lf~G~~G~Gk~~~A~~ 45 (314)
T PRK07399 26 APAYLFAGPEGVGRKLAALC 45 (314)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35789999999999986544
No 421
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=89.81 E-value=0.67 Score=43.70 Aligned_cols=55 Identities=24% Similarity=0.176 Sum_probs=38.0
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.--++.|..-+..+. ...-++..+|-|+|||+.+...+.+.+..+..+ ++|.-=|
T Consensus 127 ~~kt~~Q~~y~eai~----~~di~fGiGpAGTGKTyLava~av~al~~~~v~--rIiLtRP 181 (348)
T COG1702 127 IPKTPGQNMYPEAIE----EHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVR--RIILTRP 181 (348)
T ss_pred EecChhHHHHHHHHH----hcCeeeeecccccCChhhhHHhHhhhhhhcccc--eeeecCc
Confidence 346788876655543 244577799999999998888888888775433 4444447
No 422
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=89.65 E-value=2.1 Score=38.61 Aligned_cols=17 Identities=35% Similarity=0.579 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchhHHH
Q 010196 69 ERDLCINSPTGSGKTLS 85 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~ 85 (515)
.+.+++.||-|+|||..
T Consensus 20 ~~~~~l~G~rg~GKTsL 36 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSL 36 (234)
T ss_dssp SSEEEEEESTTSSHHHH
T ss_pred CcEEEEEcCCcCCHHHH
Confidence 46788999999999984
No 423
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.59 E-value=1.5 Score=47.68 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.+|+|+|||..+-
T Consensus 346 ~~~~lll~GppG~GKT~lAk 365 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGK 365 (775)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 45679999999999998643
No 424
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=89.56 E-value=0.2 Score=45.74 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=12.2
Q ss_pred EEEECCCCchhHHH
Q 010196 72 LCINSPTGSGKTLS 85 (515)
Q Consensus 72 ~ii~a~TGsGKT~~ 85 (515)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999985
No 425
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=89.56 E-value=2.6 Score=39.86 Aligned_cols=56 Identities=18% Similarity=0.105 Sum_probs=33.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc-c-cHHHHHHHHHHHHHhccccCcEEEE
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL-P-TRDLALQVKDVFAAIAPAVGLSVGL 134 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~-P-t~~L~~q~~~~~~~~~~~~~~~v~~ 134 (515)
+++.+..|+|||.+..-.+.....+ +.++++.+ - -|+=| .++++.|....|+.+..
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~~----g~~VllaA~DTFRAaA---iEQL~~w~er~gv~vI~ 199 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQQ----GKSVLLAAGDTFRAAA---IEQLEVWGERLGVPVIS 199 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHHC----CCeEEEEecchHHHHH---HHHHHHHHHHhCCeEEc
Confidence 6789999999999865544433322 33566554 3 34433 33455555555776655
No 426
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=89.51 E-value=2.4 Score=42.74 Aligned_cols=105 Identities=12% Similarity=0.123 Sum_probs=76.4
Q ss_pred ECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcc
Q 010196 75 NSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKL 154 (515)
Q Consensus 75 ~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 154 (515)
+.-.+.||+..-++++.+.+..+ -.|.+||.+-+.+-|.|++.++.. .-+++|..++|+.+.......
T Consensus 363 QelvF~gse~~K~lA~rq~v~~g--~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~------- 430 (593)
T KOG0344|consen 363 QELVFCGSEKGKLLALRQLVASG--FKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDET------- 430 (593)
T ss_pred hhheeeecchhHHHHHHHHHhcc--CCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHH-------
Confidence 34468888888888787777775 345799999999999999998872 237899999999775444221
Q ss_pred cccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 155 EAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
+.+.-.....++||| +.+.+ ++++..+++||-++.-.
T Consensus 431 ----------~~~FR~g~IwvLicT-----dll~R--GiDf~gvn~VInyD~p~ 467 (593)
T KOG0344|consen 431 ----------MERFRIGKIWVLICT-----DLLAR--GIDFKGVNLVINYDFPQ 467 (593)
T ss_pred ----------HHHHhccCeeEEEeh-----hhhhc--cccccCcceEEecCCCc
Confidence 122233457899999 55554 47888999999987664
No 427
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.36 E-value=1.5 Score=43.28 Aligned_cols=57 Identities=23% Similarity=0.219 Sum_probs=31.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc--ccHHHHHHHHHHHHHhccccCcEE
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSV 132 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~v 132 (515)
.-+++.+|+|+|||.+....+...... .+.++.+++ +-|..+.. .++.++...++.+
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~---~G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~ 282 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLH---MGKSVSLYTTDNYRIAAIE---QLKRYADTMGMPF 282 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEecccchhhhHHH---HHHHHHHhcCCCe
Confidence 347789999999999877655544322 122444443 43444433 4444444444443
No 428
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.31 E-value=2 Score=45.20 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
+-+|+.||.|+|||.++.+
T Consensus 40 hayLf~Gp~G~GKtt~A~~ 58 (614)
T PRK14971 40 HAYLFCGPRGVGKTTCARI 58 (614)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 3478999999999996544
No 429
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=89.31 E-value=0.6 Score=41.58 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=23.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
..++++.++||||||.+....+...+.........+.++-|.
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~~~p~~~~l~iiD~k 79 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALTYSPDDVQLYIIDPK 79 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT--TTTEEEEEE-TT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHHhcCCccEEEEEcCC
Confidence 458999999999999976655555555333334444444443
No 430
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.30 E-value=1.2 Score=47.25 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.9
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+-+|+.||.|+|||.++.+.
T Consensus 41 HAYLF~GP~GtGKTt~AriL 60 (725)
T PRK07133 41 HAYLFSGPRGTGKTSVAKIF 60 (725)
T ss_pred eEEEEECCCCCcHHHHHHHH
Confidence 34689999999999876543
No 431
>PRK10436 hypothetical protein; Provisional
Probab=89.22 E-value=0.68 Score=46.64 Aligned_cols=48 Identities=31% Similarity=0.560 Sum_probs=31.2
Q ss_pred HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
.|..+|+ .+.|.+.+..++. ..+.-+++.+|||||||.+. ..++..+.
T Consensus 196 ~L~~LG~---~~~~~~~l~~~~~--~~~GliLvtGpTGSGKTTtL-~a~l~~~~ 243 (462)
T PRK10436 196 DLETLGM---TPAQLAQFRQALQ--QPQGLILVTGPTGSGKTVTL-YSALQTLN 243 (462)
T ss_pred CHHHcCc---CHHHHHHHHHHHH--hcCCeEEEECCCCCChHHHH-HHHHHhhC
Confidence 3455664 5556666665543 23556889999999999863 44565554
No 432
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.09 E-value=0.86 Score=45.98 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=16.2
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+.+++.||.|+|||.++...
T Consensus 40 ha~Lf~Gp~G~GKtt~A~~l 59 (451)
T PRK06305 40 HAYLFSGIRGTGKTTLARIF 59 (451)
T ss_pred eEEEEEcCCCCCHHHHHHHH
Confidence 45789999999999876543
No 433
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=89.07 E-value=1.6 Score=42.95 Aligned_cols=42 Identities=29% Similarity=0.208 Sum_probs=25.0
Q ss_pred EEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 73 ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
++.++.|+|||......++..+...+. ...++++ |+..-+.+
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-~~~vi~~-~~~~~~~~ 42 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-GRRVIIA-STYRQARD 42 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS---EEEEE-ESSHHHHH
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-CcEEEEe-cCHHHHHH
Confidence 477899999999988777777665432 2345555 55554443
No 434
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.04 E-value=0.95 Score=46.08 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=30.5
Q ss_pred HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
.|..+|| .+.|.+.+..++.. ...-+++.+|||||||.+. ..++..+.
T Consensus 220 ~l~~Lg~---~~~~~~~l~~~~~~--~~GlilitGptGSGKTTtL-~a~L~~l~ 267 (486)
T TIGR02533 220 DLETLGM---SPELLSRFERLIRR--PHGIILVTGPTGSGKTTTL-YAALSRLN 267 (486)
T ss_pred CHHHcCC---CHHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHH-HHHHhccC
Confidence 3455664 56677776665531 1234789999999999863 33555543
No 435
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=88.89 E-value=3.7 Score=38.79 Aligned_cols=29 Identities=21% Similarity=0.359 Sum_probs=22.0
Q ss_pred eEEEEcchhHHHHHHHHhHHHHHHhhccc
Q 010196 199 CYLVVDETDRLLREAYQAWLPTVLQLTRS 227 (515)
Q Consensus 199 ~~vViDEah~l~~~~~~~~~~~i~~~~~~ 227 (515)
-+.|+||+|-+.....+-.+.++++...+
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs 167 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQS 167 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhh
Confidence 47899999987777777777777776653
No 436
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=88.85 E-value=1.6 Score=45.49 Aligned_cols=71 Identities=24% Similarity=0.029 Sum_probs=50.6
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc--ccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
.-+-..|..|....+ ..+--|+++|+|+|||++-+..+-..+.+. -.....++++|=|..-++|....+-.
T Consensus 377 ~ildsSq~~A~qs~l----tyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 377 VILDSSQQFAKQSKL----TYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred eeecHHHHHHHHHHh----hhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 345667988876553 366789999999999998777555444443 12234589999998888888776654
No 437
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.83 E-value=4.7 Score=37.47 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=17.7
Q ss_pred CCEEEECCCCchhHHHhHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
..+.+.+++|+|||..+...+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHH
Confidence 5688999999999997665443
No 438
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.81 E-value=0.71 Score=41.96 Aligned_cols=42 Identities=21% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.|.|.||||||.+... +++.+.+ ..+..++|+=|.-+=
T Consensus 23 ~~H~~I~G~TGsGKS~~~~~-ll~~l~~--~~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTVKV-LLEELLK--KKGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEECCCCCCHHHHHHH-HHHHHHh--cCCCCEEEEcCCCcc
Confidence 68999999999999996554 5555553 234478888787543
No 439
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=88.77 E-value=0.98 Score=47.56 Aligned_cols=55 Identities=22% Similarity=0.169 Sum_probs=37.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH--HHHHHHHHHHHhcc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD--LALQVKDVFAAIAP 126 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~--L~~q~~~~~~~~~~ 126 (515)
...++++.|+||+|||..+...+.+.+..+ ..++++=|--. |...+...++..+.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g----~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRG----DVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 357899999999999987655555555432 35777777654 66666666666543
No 440
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.73 E-value=0.3 Score=45.70 Aligned_cols=42 Identities=24% Similarity=0.327 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
.+.++++.|+||||||.. +..++..+... ..+++++-.+.|+
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~---~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE---DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT---TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc---ccceEEeccccce
Confidence 478999999999999985 34455555442 2367777666555
No 441
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.65 E-value=2.7 Score=45.30 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.5
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
...++++.+|+|+|||..+-.
T Consensus 206 ~~~n~LLvGppGvGKT~lae~ 226 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 357899999999999987544
No 442
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.65 E-value=3.3 Score=43.38 Aligned_cols=77 Identities=25% Similarity=0.379 Sum_probs=56.8
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~T 179 (515)
+.++||.|+|+..++++++.|.+. ++.+..++|+.+..++...+ +.+ ....+|+|+|
T Consensus 257 ~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il------------------~~Fr~G~~~VLVaT 314 (572)
T PRK04537 257 GARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLL------------------NRFQKGQLEILVAT 314 (572)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHH------------------HHHHcCCCeEEEEe
Confidence 457999999999999999988765 68899999998876653322 222 3457999999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcch
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEa 206 (515)
+.+. .++++.++++||.-+.
T Consensus 315 -----dv~a--rGIDip~V~~VInyd~ 334 (572)
T PRK04537 315 -----DVAA--RGLHIDGVKYVYNYDL 334 (572)
T ss_pred -----hhhh--cCCCccCCCEEEEcCC
Confidence 3333 4577888888886554
No 443
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.61 E-value=1.1 Score=39.39 Aligned_cols=63 Identities=24% Similarity=0.131 Sum_probs=37.8
Q ss_pred HhCCCC-CCCCEEEECCCCchhHHHhHHHHHHHhhhcc------cCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 62 TIGPGL-FERDLCINSPTGSGKTLSYALPIVQTLSNRA------VRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 62 ~~~~~~-~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~------~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
++..+. .|.-+++.||+|+|||...+-.+...+...+ ....+++++..-.. ..++.+.+....
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~ 93 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALL 93 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHH
T ss_pred eECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHh
Confidence 344444 4667999999999999976655555553211 13457888876544 556777777664
No 444
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.59 E-value=0.92 Score=46.19 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=15.0
Q ss_pred CEEEECCCCchhHHHhHHH
Q 010196 71 DLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~ 89 (515)
-+++.||.|+|||.++.+.
T Consensus 40 ayLf~Gp~G~GKTtlAr~l 58 (486)
T PRK14953 40 AYIFAGPRGTGKTTIARIL 58 (486)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999876543
No 445
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=88.50 E-value=1.6 Score=49.60 Aligned_cols=63 Identities=10% Similarity=0.307 Sum_probs=52.2
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCC-Cce---eEEEccCccCHHHHHHHHHHHhcCCceEEEecCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRI---KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~---~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
+.+++|.+||+..+..+++.+..+.. .++ .+..+||+++..++...++.+.+|..+|||+|+.
T Consensus 121 g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~ 187 (1171)
T TIGR01054 121 GKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM 187 (1171)
T ss_pred CCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH
Confidence 67899999999999999998876542 122 2446899999999999999999999999999974
No 446
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=88.49 E-value=8.9 Score=32.90 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=26.1
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
.+++.+++|||||..+...+. .. +..++++......-.++.+.+.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~----~~---~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAA----QS---GLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred EEEEECCCCccHHHHHHHHHH----Hc---CCCcEeCcCCCCChHHHHHHHH
Confidence 578999999999986543322 11 1135666554444334444443
No 447
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.45 E-value=0.69 Score=45.01 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=20.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
.+..+++++|||||||.. +..++..+..
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhh
Confidence 467899999999999985 3445555543
No 448
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=88.38 E-value=0.23 Score=43.61 Aligned_cols=20 Identities=30% Similarity=0.389 Sum_probs=14.3
Q ss_pred CCCCCEEEECCCCchhHHHh
Q 010196 67 LFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~ 86 (515)
..+.++++.+|.|+|||..+
T Consensus 20 aG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HCC--EEEES-CCCTHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 34789999999999999853
No 449
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=88.37 E-value=1.6 Score=44.09 Aligned_cols=61 Identities=16% Similarity=0.095 Sum_probs=37.3
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
++.++. .+..|.-+++.+++|+|||...+..+.+... .+.+++|+... +-..|+......+
T Consensus 83 LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~----~g~kvlYvs~E-Es~~qi~~ra~rl 144 (454)
T TIGR00416 83 LDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAK----NQMKVLYVSGE-ESLQQIKMRAIRL 144 (454)
T ss_pred HHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHh----cCCcEEEEECc-CCHHHHHHHHHHc
Confidence 444443 3445677899999999999865543333322 23368888764 3345665555444
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=88.33 E-value=1.5 Score=39.89 Aligned_cols=61 Identities=13% Similarity=0.180 Sum_probs=38.2
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+..++. .+..|.-+++.+++|+|||..+...+.+.+.+ +.+++|+.-... ..++.+.+..+
T Consensus 14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~----g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQ----GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhC----CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 344443 33456778999999999998765555554443 346777765433 34555656555
No 451
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=88.21 E-value=0.73 Score=40.80 Aligned_cols=35 Identities=20% Similarity=0.448 Sum_probs=21.4
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
+++.+|||||||... ..++..+... .+.+++.+--
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~--~~~~i~t~e~ 38 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKN--KTHHILTIED 38 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhc--CCcEEEEEcC
Confidence 689999999999864 3345444332 1224555543
No 452
>PRK13531 regulatory ATPase RavA; Provisional
Probab=88.08 E-value=0.59 Score=46.83 Aligned_cols=37 Identities=14% Similarity=0.071 Sum_probs=29.5
Q ss_pred cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 51 LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
--..|.+++..++-.+..+.++++.+|+|+|||..+-
T Consensus 21 ~i~gre~vI~lll~aalag~hVLL~GpPGTGKT~LAr 57 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGESVFLLGPPGIAKSLIAR 57 (498)
T ss_pred hccCcHHHHHHHHHHHccCCCEEEECCCChhHHHHHH
Confidence 3345667777777777889999999999999998654
No 453
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.08 E-value=1.2 Score=45.51 Aligned_cols=63 Identities=11% Similarity=0.057 Sum_probs=41.8
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+.+++. .+..|+.++|.+|+|+|||..++--+.+-+.+. +-+++|++-- +-..++.+.+..+.
T Consensus 10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~---ge~~lyvs~e-E~~~~l~~~~~~~G 73 (484)
T TIGR02655 10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHF---DEPGVFVTFE-ESPQDIIKNARSFG 73 (484)
T ss_pred HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC---CCCEEEEEEe-cCHHHHHHHHHHcC
Confidence 445554 345678899999999999997665555544431 2367888743 55566666676664
No 454
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.98 E-value=0.94 Score=43.20 Aligned_cols=56 Identities=23% Similarity=0.220 Sum_probs=38.4
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
.+.+.|..-+..++ ..+++++++++||||||. ++.+++..+- +..+++.+=-|.++
T Consensus 127 t~~~~~~ayL~~~i---e~~~siii~G~t~sGKTt-~lnall~~Ip----~~~rivtIEdt~E~ 182 (312)
T COG0630 127 TISPEQAAYLWLAI---EARKSIIICGGTASGKTT-LLNALLDFIP----PEERIVTIEDTPEL 182 (312)
T ss_pred CCCHHHHHHHHHHH---HcCCcEEEECCCCCCHHH-HHHHHHHhCC----chhcEEEEeccccc
Confidence 57777776655544 368999999999999997 3555554443 23367777666665
No 455
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.92 E-value=3.3 Score=46.28 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=21.1
Q ss_pred ceEEEEcchhHHHHHHHHhHHHHHHhhcc
Q 010196 198 LCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (515)
Q Consensus 198 ~~~vViDEah~l~~~~~~~~~~~i~~~~~ 226 (515)
--+||+|++|.+.+....+.+..++...+
T Consensus 122 ~~~lvlDD~h~~~~~~~~~~l~~l~~~~~ 150 (903)
T PRK04841 122 PLYLVIDDYHLITNPEIHEAMRFFLRHQP 150 (903)
T ss_pred CEEEEEeCcCcCCChHHHHHHHHHHHhCC
Confidence 34899999999866666667777776543
No 456
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.82 E-value=4.3 Score=41.53 Aligned_cols=18 Identities=33% Similarity=0.510 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
...+++++|+|+|||+.+
T Consensus 545 PsGvLL~GPPGCGKTLlA 562 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLA 562 (802)
T ss_pred CCceEEeCCCCccHHHHH
Confidence 567999999999999854
No 457
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.70 E-value=4.4 Score=41.64 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=40.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
.+-.+..-|=--|||. ++.|++..+... ..+.++.|++.-+..++-+.+++..
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s-~~gI~IGYvAHqKhvs~~Vf~EI~~ 254 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKN-IIGISIGYVAHQKHVSQFVLKEVEF 254 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHh-hcCceEEEEeeHHHHHHHHHHHHHH
Confidence 3445566699999997 788888888774 5678899999988887777766653
No 458
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.68 E-value=2.5 Score=44.85 Aligned_cols=89 Identities=19% Similarity=0.374 Sum_probs=60.8
Q ss_pred HHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-c
Q 010196 92 QTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-Q 170 (515)
Q Consensus 92 ~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~ 170 (515)
..+......+.+++|+++|+..++.+.+.+.+. ++++..++|+.+..+....+ ..+ .
T Consensus 433 ~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l------------------~~fr~ 490 (655)
T TIGR00631 433 SEIRQRVARNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEII------------------RDLRL 490 (655)
T ss_pred HHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHH------------------HHHhc
Confidence 333333334668999999999998888888775 67888888876655443222 222 2
Q ss_pred cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 171 SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 171 ~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
+..+|+||| +.+. .++++.++++||+-+++..
T Consensus 491 G~i~VLV~t-----~~L~--rGfDiP~v~lVvi~Dadif 522 (655)
T TIGR00631 491 GEFDVLVGI-----NLLR--EGLDLPEVSLVAILDADKE 522 (655)
T ss_pred CCceEEEEc-----Chhc--CCeeeCCCcEEEEeCcccc
Confidence 457899988 3333 4578889999988887753
No 459
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=87.66 E-value=0.43 Score=46.24 Aligned_cols=20 Identities=40% Similarity=0.509 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
...|+|+.+|||||||+.+.
T Consensus 225 eKSNvLllGPtGsGKTllaq 244 (564)
T KOG0745|consen 225 EKSNVLLLGPTGSGKTLLAQ 244 (564)
T ss_pred ecccEEEECCCCCchhHHHH
Confidence 34689999999999998644
No 460
>PRK06904 replicative DNA helicase; Validated
Probab=87.65 E-value=3.5 Score=41.89 Aligned_cols=61 Identities=11% Similarity=-0.143 Sum_probs=34.4
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
.+..+...+..|.=+++.|.||.|||..++-.+.+.... .+..++|++.- .-..|+...+-
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlE-Ms~~ql~~Rll 270 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLE-MPAEQIMMRML 270 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEecc-CCHHHHHHHHH
Confidence 345555555556668889999999998654333333322 13357776533 22444544443
No 461
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.56 E-value=1.5 Score=38.06 Aligned_cols=29 Identities=31% Similarity=0.468 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~ 97 (515)
.++.+++.|+.|+|||.. +-.+...+...
T Consensus 23 ~~~~~ll~G~~G~GKT~l-l~~~~~~~~~~ 51 (185)
T PF13191_consen 23 SPRNLLLTGESGSGKTSL-LRALLDRLAER 51 (185)
T ss_dssp ----EEE-B-TTSSHHHH-HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc
Confidence 357899999999999985 33355555553
No 462
>PRK08506 replicative DNA helicase; Provisional
Probab=87.55 E-value=3.4 Score=42.02 Aligned_cols=59 Identities=12% Similarity=-0.137 Sum_probs=36.1
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
.+..+...+..|.-+++.|.||.|||..++-.+.+.+.. +..++|++.- .-..|+...+
T Consensus 181 ~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~~~----g~~V~~fSlE-Ms~~ql~~Rl 239 (472)
T PRK08506 181 ELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKALNQ----DKGVAFFSLE-MPAEQLMLRM 239 (472)
T ss_pred HHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHHhc----CCcEEEEeCc-CCHHHHHHHH
Confidence 445555555566778899999999998666555544322 3357777533 2344454444
No 463
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=87.50 E-value=4.4 Score=35.78 Aligned_cols=77 Identities=16% Similarity=0.306 Sum_probs=53.3
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----cccc-CCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-MDVEG 403 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~~G-iDi~~ 403 (515)
.+.++||.+++...+......+..... .+..+..++|+.+..+....+. +..+|+|+|.- +..+ .++++
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~~~~ 143 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLDLSK 143 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCChhh
Confidence 456899999999999988887765532 3477888999888755543332 56789999952 2222 56677
Q ss_pred CCEEEEcc
Q 010196 404 VNNVVNYD 411 (515)
Q Consensus 404 v~~VI~~~ 411 (515)
++++|.-.
T Consensus 144 l~~lIvDE 151 (203)
T cd00268 144 VKYLVLDE 151 (203)
T ss_pred CCEEEEeC
Confidence 77777543
No 464
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=87.45 E-value=2.6 Score=39.50 Aligned_cols=69 Identities=22% Similarity=0.291 Sum_probs=39.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcc-cC-cccEEEEcccH-----------HHHHHHHHHHHHhccccCcEEEEe
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRA-VR-CLRALVVLPTR-----------DLALQVKDVFAAIAPAVGLSVGLA 135 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-~~-~~~~lil~Pt~-----------~L~~q~~~~~~~~~~~~~~~v~~~ 135 (515)
++-+++.+|+|+|||-. .-++.+.|.-+- .+ ....+|=.... .|+.++++.+.++...-+.-|.++
T Consensus 177 NRliLlhGPPGTGKTSL-CKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvL 255 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSL-CKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVL 255 (423)
T ss_pred eeEEEEeCCCCCChhHH-HHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35588999999999974 444555553221 11 12234434443 456666677777766655555555
Q ss_pred ecC
Q 010196 136 VGQ 138 (515)
Q Consensus 136 ~g~ 138 (515)
...
T Consensus 256 IDE 258 (423)
T KOG0744|consen 256 IDE 258 (423)
T ss_pred eHH
Confidence 443
No 465
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=87.44 E-value=2.2 Score=41.11 Aligned_cols=19 Identities=16% Similarity=0.277 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
.-.++.+|.|+|||..+..
T Consensus 29 ha~Lf~G~~G~gk~~~a~~ 47 (329)
T PRK08058 29 HAYLFEGAKGTGKKATALW 47 (329)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3469999999999986544
No 466
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.44 E-value=3.6 Score=45.38 Aligned_cols=38 Identities=16% Similarity=-0.046 Sum_probs=25.1
Q ss_pred cchhhHHHHHHHhCCCC--CCCCEEEECCCCchhHHHhHH
Q 010196 51 LFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~--~~~~~ii~a~TGsGKT~~~~~ 88 (515)
|--.|..-+..++..+. ...+.++.+|+|+|||..+-.
T Consensus 174 ~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~ 213 (852)
T TIGR03346 174 PVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEG 213 (852)
T ss_pred cCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 44445555555554322 347899999999999986543
No 467
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=87.41 E-value=0.76 Score=48.36 Aligned_cols=50 Identities=18% Similarity=0.089 Sum_probs=37.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..++++.||||+|||..+++|-+-. . +.-++|+-|.-|+........++.
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~--~----~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK--W----GGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc--C----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 4689999999999999999996521 1 124788889999877666655443
No 468
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.27 E-value=3.8 Score=45.03 Aligned_cols=24 Identities=17% Similarity=0.027 Sum_probs=18.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
..+++++.+|+|+|||..+-..+.
T Consensus 199 ~~~n~lL~G~pGvGKTal~~~la~ 222 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIAEGLAQ 222 (821)
T ss_pred ccCCeEEECCCCCCHHHHHHHHHH
Confidence 357899999999999987644333
No 469
>COG1674 FtsK DNA segregation ATPase FtsK/SpoIIIE and related proteins [Cell division and chromosome partitioning]
Probab=87.25 E-value=4 Score=45.00 Aligned_cols=40 Identities=25% Similarity=0.330 Sum_probs=29.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil 107 (515)
...++++.+.||||||.+.-..++..+.+......+.+++
T Consensus 529 k~~hllv~G~tgsGKSv~lnt~i~Sll~~~~P~ev~~~~i 568 (858)
T COG1674 529 KAGHLLIAGATGSGKSVALNTMILSLLYTHSPEEVRFYII 568 (858)
T ss_pred cCCcEEEEcCCCCcHHHHHHHHHHHHHHhCChhHeEEEEE
Confidence 3478999999999999987777777777654444344443
No 470
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=87.15 E-value=1.1 Score=42.19 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
+.++++.+|+|+|||.++..
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ 77 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALR 77 (284)
T ss_pred CceEEEEcCCCCCHHHHHHH
Confidence 45899999999999987643
No 471
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=87.11 E-value=1.7 Score=45.44 Aligned_cols=54 Identities=20% Similarity=0.087 Sum_probs=38.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH--HHHHHHHHHHHHhcc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR--DLALQVKDVFAAIAP 126 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~--~L~~q~~~~~~~~~~ 126 (515)
..+.++.++||+|||..+...+.+.+.. +..++++=|-. ++...++..++....
T Consensus 180 ~gHtlV~GtTGsGKT~l~~~li~q~i~~----g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 180 VGHTLVLGTTRVGKTRLAELLITQDIRR----GDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 5789999999999999877666665544 23678887766 455556666666544
No 472
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=87.02 E-value=0.73 Score=48.00 Aligned_cols=48 Identities=31% Similarity=0.465 Sum_probs=31.6
Q ss_pred HHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 42 ALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 42 ~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
.|.++|| .+.|.+.+..++. .....+++++|||||||.+. ..++..+.
T Consensus 294 ~l~~lg~---~~~~~~~l~~~~~--~~~Glilv~G~tGSGKTTtl-~a~l~~~~ 341 (564)
T TIGR02538 294 DIDKLGF---EPDQKALFLEAIH--KPQGMVLVTGPTGSGKTVSL-YTALNILN 341 (564)
T ss_pred CHHHcCC---CHHHHHHHHHHHH--hcCCeEEEECCCCCCHHHHH-HHHHHhhC
Confidence 3556675 4566666665543 12456889999999999863 44665553
No 473
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=86.82 E-value=0.82 Score=45.64 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=32.1
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
..+++++.|+||+|||.. +..++..+... +.+++|+=|.-++...
T Consensus 41 ~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~---~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQ-IRELLASIRAR---GDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhccEEEEcCCCCCHHHH-HHHHHHHHHhc---CCCEEEEeCCcchhHh
Confidence 457999999999999985 44445444432 3468888898776543
No 474
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=2.3 Score=39.37 Aligned_cols=46 Identities=15% Similarity=0.193 Sum_probs=29.6
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
+.+++.+|+|+||++.+-..+- ..+ .+++-+.+..|+..|.-+-.+
T Consensus 167 rgiLLyGPPGTGKSYLAKAVAT-------EAn-STFFSvSSSDLvSKWmGESEk 212 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVAT-------EAN-STFFSVSSSDLVSKWMGESEK 212 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHh-------hcC-CceEEeehHHHHHHHhccHHH
Confidence 3499999999999974332222 111 477888888887665444333
No 475
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=86.58 E-value=1.1 Score=40.05 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=27.8
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
..|.-+.+.+|+|+|||...+..+.+.... +.+++|+.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~----g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQ----GKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 346778899999999999766555544332 3367777654
No 476
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=86.57 E-value=1.2 Score=45.45 Aligned_cols=64 Identities=19% Similarity=0.106 Sum_probs=43.3
Q ss_pred HHHHHHhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 57 AVWQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 57 ~a~~~~~~~-~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
..+..++.. +..|.-+++.+|+|+|||...+--+.+.+.+ +.+++|++- .+-..|+...++.+.
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~----ge~~~y~s~-eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACAN----KERAILFAY-EESRAQLLRNAYSWG 314 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEe-eCCHHHHHHHHHHcC
Confidence 345555543 4466779999999999999755555444433 347888873 466677877777663
No 477
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=86.54 E-value=0.77 Score=43.83 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=16.8
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..+.++++.+|||||||..
T Consensus 142 ~~~~~ili~G~tGsGKTTl 160 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTF 160 (308)
T ss_pred hCCCEEEEECCCCCCHHHH
Confidence 3578999999999999984
No 478
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=86.45 E-value=4.4 Score=40.52 Aligned_cols=73 Identities=21% Similarity=0.282 Sum_probs=54.4
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~T 179 (515)
.+.++|.+.+..=|+-+++.|.+. +.++..++|+.+.......+ ..++. ..+|+|||
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL------------------~~fr~~t~dIlVaT 574 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENAL------------------ADFREGTGDILVAT 574 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHH------------------HHHHhcCCCEEEEe
Confidence 457999999988877777777665 78999999999877664433 34555 58999999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEE
Q 010196 180 PGRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vV 202 (515)
- .. .++++..++++||
T Consensus 575 D-----vA--gRGIDIpnVSlVi 590 (673)
T KOG0333|consen 575 D-----VA--GRGIDIPNVSLVI 590 (673)
T ss_pred c-----cc--ccCCCCCccceee
Confidence 3 22 3557788888887
No 479
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=86.38 E-value=0.66 Score=48.90 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=38.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..++++.||||||||..+++|-+-... ..++|+=|--++........++.
T Consensus 144 ~~hvLviApTrSGKgvg~VIPnLL~~~------~S~VV~D~KGEl~~~Ta~~R~~~ 193 (663)
T PRK13876 144 PEHVLCFAPTRSGKGVGLVVPTLLTWP------GSAIVHDIKGENWQLTAGFRARF 193 (663)
T ss_pred CceEEEEecCCCCcceeEehhhHHhCC------CCEEEEeCcchHHHHHHHHHHhC
Confidence 468999999999999999999764431 25788889988877666655443
No 480
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=86.38 E-value=1.6 Score=39.43 Aligned_cols=47 Identities=23% Similarity=0.138 Sum_probs=30.8
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
+..++. .+..|.-+.+.+++|+|||..++..+.+.+.. +.+++|+.-
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~----~~~v~yi~~ 59 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKN----GKKVIYIDT 59 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEEC
Confidence 444453 33456778999999999998766655555443 236777653
No 481
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=86.22 E-value=0.67 Score=31.93 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.8
Q ss_pred CCCEEEECCCCchhHHH
Q 010196 69 ERDLCINSPTGSGKTLS 85 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~ 85 (515)
|...++.+|+|+|||..
T Consensus 23 g~~tli~G~nGsGKSTl 39 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTL 39 (62)
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45799999999999975
No 482
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=86.20 E-value=1.9 Score=39.93 Aligned_cols=52 Identities=19% Similarity=0.101 Sum_probs=30.6
Q ss_pred HHHHHhCCCCCCCC-EEEECCCCchhHHHhHHHHHHHhhhc--ccCcccEEEEcc
Q 010196 58 VWQETIGPGLFERD-LCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (515)
Q Consensus 58 a~~~~~~~~~~~~~-~ii~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~~lil~P 109 (515)
.+..++........ .=+.++.|+|||-.++-.++...... ...+.+++|+.-
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidT 80 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDT 80 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEES
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeC
Confidence 45555543333333 44899999999987665555443321 112447888843
No 483
>PTZ00110 helicase; Provisional
Probab=86.01 E-value=4.4 Score=42.21 Aligned_cols=76 Identities=17% Similarity=0.190 Sum_probs=54.3
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~ 178 (515)
...++||.|+++.-++.+.+.++.. ++.+..++|+.+..++...+ ..++ ....|+|+
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il------------------~~F~~G~~~ILVa 433 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVL------------------NEFKTGKSPIMIA 433 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHH------------------HHHhcCCCcEEEE
Confidence 3458999999999999988888753 67788899988766553222 2233 34689999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEc
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVD 204 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (515)
|. .+. .++++.++++||.-
T Consensus 434 Td-----v~~--rGIDi~~v~~VI~~ 452 (545)
T PTZ00110 434 TD-----VAS--RGLDVKDVKYVINF 452 (545)
T ss_pred cc-----hhh--cCCCcccCCEEEEe
Confidence 93 332 45778888888853
No 484
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=85.93 E-value=1.1 Score=48.07 Aligned_cols=73 Identities=22% Similarity=0.226 Sum_probs=53.6
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..+..++|-|.+++.. ........+.+|+|+|||-.+.- ++.-+... .+..+++|++.+..-..|..+.+.+.
T Consensus 734 ~n~v~ft~~qveai~s----g~qpgltmvvgppgtgktd~avq-il~~lyhn-~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 734 KNQVKFTPTQVEAILS----GMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred cchhccCHHHHHHHHh----cCCCCceeeecCCCCCCcchhhh-hhhhhhhc-CCCcceEEEEecccchhHHHHHHHhc
Confidence 3445678899998543 34578899999999999987654 44444433 45678999999888888888777654
No 485
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=85.92 E-value=1.2 Score=43.31 Aligned_cols=43 Identities=14% Similarity=0.265 Sum_probs=26.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
.+..+++++|||||||... ..++..+... ...+++.+-...++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~--~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN--AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC--CCCEEEEEcCChhh
Confidence 3577999999999999853 4455544332 22355555443443
No 486
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=85.88 E-value=13 Score=29.61 Aligned_cols=79 Identities=18% Similarity=0.350 Sum_probs=53.1
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~ 178 (515)
.+.++||.+++..-++++.+.+++ .+..+..++|+.+..+.... ...+.. ...|+++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~------------------~~~f~~~~~~ili~ 84 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRK----PGIKVAALHGDGSQEEREEV------------------LKDFREGEIVVLVA 84 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHH------------------HHHHHcCCCcEEEE
Confidence 345799999999999998888887 25778888888775444222 122223 3578888
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
|.- + ..++++...+.+|+....
T Consensus 85 t~~-~------~~G~d~~~~~~vi~~~~~ 106 (131)
T cd00079 85 TDV-I------ARGIDLPNVSVVINYDLP 106 (131)
T ss_pred cCh-h------hcCcChhhCCEEEEeCCC
Confidence 842 1 134666677777777664
No 487
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=85.59 E-value=1.1 Score=46.81 Aligned_cols=50 Identities=16% Similarity=0.099 Sum_probs=37.5
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..++++.||||+|||..+++|-+- .. +.-++++-|.-|+.......-++.
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL--~~----~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTAL--KY----GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhh--cC----CCCEEEEEChHHHHHHHHHHHHHc
Confidence 368999999999999999999642 21 125888889999877666555444
No 488
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.55 E-value=1 Score=42.08 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.++.++++||+|+|||..
T Consensus 32 ~~~pvLl~G~~GtGKT~l 49 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSL 49 (272)
T ss_dssp CTEEEEEESSTTSSHHHH
T ss_pred cCCcEEEECCCCCchhHH
Confidence 578999999999999985
No 489
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=85.54 E-value=1.6 Score=48.17 Aligned_cols=96 Identities=18% Similarity=0.098 Sum_probs=69.1
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEc
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNY 410 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~ 410 (515)
...++|||+.-....+.+...+.-.+ +.. ...++ .++-...+..|++ --.+++-+...+-|+|+-++.+|+..
T Consensus 1220 ~qekvIvfsqws~~ldV~e~~~~~N~---I~~-~~~~~--t~d~~dc~~~fk~-I~clll~~~~~~~GLNL~eA~Hvfl~ 1292 (1394)
T KOG0298|consen 1220 EQEKVIVFSQWSVVLDVKELRYLMNL---IKK-QLDGE--TEDFDDCIICFKS-IDCLLLFVSKGSKGLNLIEATHVFLV 1292 (1394)
T ss_pred cCceEEEEEehHHHHHHHHHHHHhhh---hHh-hhccC--Ccchhhhhhhccc-ceEEEEEeccCcccccHHhhhhhhee
Confidence 35688998876666666666554333 222 12222 2345677788876 22345777888999999999999999
Q ss_pred cCCCChhhhHHhhhhcccCCCCc
Q 010196 411 DKPAYIKTYIHRAGRTARAGQLG 433 (515)
Q Consensus 411 ~~p~s~~~~~Qr~GR~gR~g~~g 433 (515)
++-.++..-.|.+||+.|.|++-
T Consensus 1293 ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1293 EPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred ccccCchHHHhhhhhhhhccccc
Confidence 99999999999999999999873
No 490
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.53 E-value=1.1 Score=40.54 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=24.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
-++++.|++|||||. +++-++..+... -..+++++|
T Consensus 14 fr~viIG~sGSGKT~-li~~lL~~~~~~---f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTT-LIKSLLYYLRHK---FDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHH-HHHHHHHhhccc---CCEEEEEec
Confidence 479999999999997 455555544432 235666667
No 491
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=85.42 E-value=3.3 Score=44.44 Aligned_cols=53 Identities=19% Similarity=0.101 Sum_probs=34.9
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
.+..++. .+..|.-+.+.+|+|+|||..++..+.+.... +.+++|+..-..+.
T Consensus 47 ~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~----G~~v~yId~E~t~~ 101 (790)
T PRK09519 47 ALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGVAAFIDAEHALD 101 (790)
T ss_pred HHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEECCccchh
Confidence 3444453 34456778899999999999765555544332 34688887665555
No 492
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=85.33 E-value=5.4 Score=40.24 Aligned_cols=75 Identities=19% Similarity=0.290 Sum_probs=54.0
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
..++||.+++++-+..+++.+... ++.+..++|+.+..++...+. ..-....+|+|+|-
T Consensus 245 ~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~-----------------~f~~G~~~vLVaTd 303 (434)
T PRK11192 245 VTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIK-----------------RLTDGRVNVLVATD 303 (434)
T ss_pred CCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHH-----------------HHhCCCCcEEEEcc
Confidence 457999999999999999888764 788999999988766643321 11224579999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEEE
Q 010196 181 GRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
.+. .++++.++++||.
T Consensus 304 -----~~~--~GiDip~v~~VI~ 319 (434)
T PRK11192 304 -----VAA--RGIDIDDVSHVIN 319 (434)
T ss_pred -----ccc--cCccCCCCCEEEE
Confidence 222 4577788888873
No 493
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=85.33 E-value=2.4 Score=39.35 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=20.1
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcc
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCL 102 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~ 102 (515)
+-+.++||+||.++.-+ +.+.+......++
T Consensus 113 LSfHG~tGTGKN~Va~i-iA~n~~~~Gl~S~ 142 (344)
T KOG2170|consen 113 LSFHGWTGTGKNYVAEI-IAENLYRGGLRSP 142 (344)
T ss_pred EEecCCCCCchhHHHHH-HHHHHHhccccch
Confidence 34689999999998777 4444554444433
No 494
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=85.01 E-value=3.3 Score=43.82 Aligned_cols=74 Identities=20% Similarity=0.368 Sum_probs=53.0
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCC--CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-----Ccccc-CCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTRG-MDVEG 403 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-----~~~~G-iDi~~ 403 (515)
..++||.||++..+..+++.+..+.. .++.+..++|+.+...+...+ + ....|+|+|+ .+.++ +++.+
T Consensus 74 ~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l---~-~~~~IVVgTPgrl~d~l~r~~l~l~~ 149 (629)
T PRK11634 74 APQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRAL---R-QGPQIVVGTPGRLLDHLKRGTLDLSK 149 (629)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHh---c-CCCCEEEECHHHHHHHHHcCCcchhh
Confidence 45799999999999999888766432 257888889998765443333 2 4578999995 33333 67888
Q ss_pred CCEEEE
Q 010196 404 VNNVVN 409 (515)
Q Consensus 404 v~~VI~ 409 (515)
+.+||.
T Consensus 150 l~~lVl 155 (629)
T PRK11634 150 LSGLVL 155 (629)
T ss_pred ceEEEe
Confidence 888775
No 495
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.88 E-value=0.64 Score=48.25 Aligned_cols=143 Identities=17% Similarity=0.207 Sum_probs=76.7
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-cccHHHHHHHHHHHHHhccccCcEEEEe---------e
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-LPTRDLALQVKDVFAAIAPAVGLSVGLA---------V 136 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~Pt~~L~~q~~~~~~~~~~~~~~~v~~~---------~ 136 (515)
..|+.+.+.+|.|+|||.+ +.+++++++. .+.++++= +|.+.+-..+.. +.....+-...+. |
T Consensus 492 ~pGe~vALVGPSGsGKSTi--asLL~rfY~P--tsG~IllDG~~i~~~~~~~lr---~~Ig~V~QEPvLFs~sI~eNI~Y 564 (716)
T KOG0058|consen 492 RPGEVVALVGPSGSGKSTI--ASLLLRFYDP--TSGRILLDGVPISDINHKYLR---RKIGLVGQEPVLFSGSIRENIAY 564 (716)
T ss_pred CCCCEEEEECCCCCCHHHH--HHHHHHhcCC--CCCeEEECCeehhhcCHHHHH---HHeeeeeccceeecccHHHHHhc
Confidence 3588999999999999986 4477777763 23333332 577766544433 3222122222222 2
Q ss_pred cCCch-HHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC-----cCCCCCcceEEEEcchhHHH
Q 010196 137 GQSSI-ADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-----RGFTLEHLCYLVVDETDRLL 210 (515)
Q Consensus 137 g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-----~~~~~~~~~~vViDEah~l~ 210 (515)
|.... ++...... ...+..+....+.++++=.|+.-|..+.-=++. +. -+.+..++|+|||=.-+
T Consensus 565 G~~~~t~e~i~~AA--------k~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA-Llr~P~VLILDEATSAL 635 (716)
T KOG0058|consen 565 GLDNATDEEIEAAA--------KMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA-LLRNPRVLILDEATSAL 635 (716)
T ss_pred CCCCCCHHHHHHHH--------HHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH-HhcCCCEEEEechhhhc
Confidence 22211 11111111 011223344556667777777664332100000 00 14567899999999999
Q ss_pred HHHHHhHHHHHHhhc
Q 010196 211 REAYQAWLPTVLQLT 225 (515)
Q Consensus 211 ~~~~~~~~~~i~~~~ 225 (515)
|...+..+++.+..+
T Consensus 636 DaeSE~lVq~aL~~~ 650 (716)
T KOG0058|consen 636 DAESEYLVQEALDRL 650 (716)
T ss_pred chhhHHHHHHHHHHh
Confidence 988877777777544
No 496
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=84.79 E-value=0.67 Score=48.88 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=35.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
..++++.||||||||..+++|.+-.. +..++|+-|--++..-.....
T Consensus 175 ~~HvlviapTgSGKgvg~ViPnLL~~------~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 175 PEHVLTYAPTRSGKGVGLVVPTLLSW------GHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred CceEEEEecCCCCCceEEEccchhhC------CCCEEEEeCcHHHHHHHHHHH
Confidence 36799999999999999998877432 225888889988876554443
No 497
>PF13479 AAA_24: AAA domain
Probab=84.75 E-value=2.3 Score=38.07 Aligned_cols=38 Identities=11% Similarity=0.079 Sum_probs=24.9
Q ss_pred cEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHH
Q 010196 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLRE 212 (515)
Q Consensus 174 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~ 212 (515)
.|-|.+++.|.+.+.... -....++.||||-+..+.+.
T Consensus 46 ~i~i~s~~~~~~~~~~l~-~~~~~y~tiVIDsis~~~~~ 83 (213)
T PF13479_consen 46 VIPITSWEDFLEALDELE-EDEADYDTIVIDSISWLEDM 83 (213)
T ss_pred eeCcCCHHHHHHHHHHHH-hccCCCCEEEEECHHHHHHH
Confidence 444567777777653311 11557899999999987443
No 498
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=84.73 E-value=1.4 Score=43.09 Aligned_cols=27 Identities=33% Similarity=0.213 Sum_probs=20.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
+..+++++|||||||.. +..++..+..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 45789999999999985 4556666544
No 499
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=84.68 E-value=6.2 Score=43.41 Aligned_cols=38 Identities=16% Similarity=0.021 Sum_probs=26.4
Q ss_pred cchhhHHHHHHHhCCCC--CCCCEEEECCCCchhHHHhHH
Q 010196 51 LFPVQVAVWQETIGPGL--FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~--~~~~~ii~a~TGsGKT~~~~~ 88 (515)
|--.|..-+..++..+. ...+.++.+|+|+|||...-.
T Consensus 188 ~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~ 227 (852)
T TIGR03345 188 PVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEG 227 (852)
T ss_pred cccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHH
Confidence 44447777776664322 347899999999999986443
No 500
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=3.1 Score=45.61 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHhCCCCC-cchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 25 EDCPLDHLPCLDPRLKVALQNMGISS-LFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 25 ~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
+...|+++- .-......|+++-+.- ++|-+..- + ++...+.+++.+|.|+|||+.+-
T Consensus 260 ~~v~fd~vg-gl~~~i~~LKEmVl~PLlyPE~f~~----~-~itpPrgvL~~GppGTGkTl~ar 317 (1080)
T KOG0732|consen 260 SSVGFDSVG-GLENYINQLKEMVLLPLLYPEFFDN----F-NITPPRGVLFHGPPGTGKTLMAR 317 (1080)
T ss_pred cccCccccc-cHHHHHHHHHHHHHhHhhhhhHhhh----c-ccCCCcceeecCCCCCchhHHHH
Confidence 344455543 4455666777765422 34433221 1 12345779999999999998643
Done!