Query 010196
Match_columns 515
No_of_seqs 249 out of 2522
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:59:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 3.1E-59 1E-63 468.3 38.3 364 18-454 52-420 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 4.1E-56 1.4E-60 445.9 36.0 370 17-456 10-397 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 9.7E-56 3.3E-60 442.0 36.4 354 34-456 43-397 (410)
4 1s2m_A Putative ATP-dependent 100.0 2.3E-54 8E-59 430.7 38.4 359 28-457 22-380 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1.9E-54 6.4E-59 433.5 35.4 355 34-456 46-401 (414)
6 1xti_A Probable ATP-dependent 100.0 1.8E-53 6.1E-58 423.1 40.3 354 35-455 15-371 (391)
7 3pey_A ATP-dependent RNA helic 100.0 8.5E-54 2.9E-58 426.1 35.6 377 22-477 5-390 (395)
8 3fht_A ATP-dependent RNA helic 100.0 5.9E-54 2E-58 429.7 33.1 361 21-456 24-394 (412)
9 3sqw_A ATP-dependent RNA helic 100.0 1.4E-53 4.7E-58 443.3 35.2 368 35-455 28-411 (579)
10 3i5x_A ATP-dependent RNA helic 100.0 7.8E-53 2.7E-57 437.7 36.4 369 34-455 78-462 (563)
11 1hv8_A Putative ATP-dependent 100.0 2.2E-52 7.4E-57 411.7 35.3 347 35-456 13-359 (367)
12 3fmp_B ATP-dependent RNA helic 100.0 2.4E-54 8.1E-59 440.0 17.2 352 34-454 98-459 (479)
13 1fuu_A Yeast initiation factor 100.0 4E-54 1.4E-58 428.3 18.2 351 35-455 28-379 (394)
14 2z0m_A 337AA long hypothetical 100.0 7.1E-51 2.4E-55 396.0 32.7 334 35-454 1-334 (337)
15 1oyw_A RECQ helicase, ATP-depe 100.0 8.1E-51 2.8E-55 414.5 31.7 371 35-496 9-384 (523)
16 2v1x_A ATP-dependent DNA helic 100.0 4E-50 1.4E-54 413.1 28.8 339 34-451 27-383 (591)
17 3fho_A ATP-dependent RNA helic 100.0 4E-51 1.4E-55 417.1 19.9 352 34-455 125-484 (508)
18 3oiy_A Reverse gyrase helicase 100.0 3.2E-48 1.1E-52 387.7 28.9 372 38-487 9-409 (414)
19 4a2p_A RIG-I, retinoic acid in 100.0 4.4E-45 1.5E-49 379.7 25.3 339 47-447 4-513 (556)
20 2zj8_A DNA helicase, putative 100.0 1.7E-44 5.6E-49 384.3 29.7 336 35-445 8-390 (720)
21 3tbk_A RIG-I helicase domain; 100.0 1E-44 3.4E-49 377.0 25.8 338 50-448 4-513 (555)
22 2ykg_A Probable ATP-dependent 100.0 2.5E-45 8.7E-50 391.0 21.6 351 40-450 3-524 (696)
23 2va8_A SSO2462, SKI2-type heli 100.0 7.8E-44 2.7E-48 379.4 32.8 333 35-443 15-409 (715)
24 3l9o_A ATP-dependent RNA helic 100.0 8.7E-45 3E-49 396.2 25.6 336 35-452 169-608 (1108)
25 2p6r_A Afuhel308 helicase; pro 100.0 1.8E-44 6.3E-49 382.8 25.0 337 35-445 10-391 (702)
26 1gku_B Reverse gyrase, TOP-RG; 100.0 4.1E-44 1.4E-48 391.3 28.0 356 40-473 47-485 (1054)
27 1tf5_A Preprotein translocase 100.0 2.8E-43 9.7E-48 361.6 30.9 357 45-443 79-546 (844)
28 4a2q_A RIG-I, retinoic acid in 100.0 1.3E-43 4.5E-48 380.9 28.4 342 45-447 243-754 (797)
29 4ddu_A Reverse gyrase; topoiso 100.0 3.2E-43 1.1E-47 383.7 30.0 335 45-455 74-503 (1104)
30 1wp9_A ATP-dependent RNA helic 100.0 1.3E-42 4.5E-47 355.4 29.2 324 50-446 9-479 (494)
31 2xgj_A ATP-dependent RNA helic 100.0 9.8E-43 3.3E-47 376.9 29.4 326 43-452 80-510 (1010)
32 4a2w_A RIG-I, retinoic acid in 100.0 1.6E-42 5.3E-47 376.0 25.7 341 45-446 243-753 (936)
33 1gm5_A RECG; helicase, replica 100.0 1.8E-42 6.1E-47 363.3 24.6 329 35-441 354-696 (780)
34 4f92_B U5 small nuclear ribonu 100.0 6.6E-42 2.3E-46 385.9 30.0 382 8-453 884-1319(1724)
35 4a4z_A Antiviral helicase SKI2 100.0 2.3E-41 8E-46 366.2 27.2 328 45-452 35-504 (997)
36 2fsf_A Preprotein translocase 100.0 2.2E-41 7.7E-46 346.5 25.4 354 46-443 71-584 (853)
37 1nkt_A Preprotein translocase 100.0 6.5E-40 2.2E-44 335.9 34.6 357 46-444 108-619 (922)
38 2eyq_A TRCF, transcription-rep 100.0 1.7E-40 5.7E-45 364.8 30.0 330 35-443 588-923 (1151)
39 4gl2_A Interferon-induced heli 100.0 9.4E-42 3.2E-46 363.6 19.2 338 50-440 7-517 (699)
40 4f92_B U5 small nuclear ribonu 100.0 1.6E-41 5.4E-46 382.9 20.7 355 35-453 66-484 (1724)
41 2fwr_A DNA repair protein RAD2 100.0 2.6E-40 8.8E-45 336.1 18.4 294 50-443 93-455 (472)
42 2oca_A DAR protein, ATP-depend 100.0 4.9E-40 1.7E-44 337.3 18.8 310 50-440 113-453 (510)
43 2whx_A Serine protease/ntpase/ 100.0 2.9E-40 9.9E-45 340.8 15.6 312 35-453 157-492 (618)
44 2jlq_A Serine protease subunit 100.0 2.7E-39 9.3E-44 324.3 19.1 288 47-441 1-310 (451)
45 1yks_A Genome polyprotein [con 100.0 5.9E-40 2E-44 327.5 11.7 279 66-453 5-313 (440)
46 2xau_A PRE-mRNA-splicing facto 100.0 2.1E-38 7.2E-43 335.0 22.0 330 34-444 78-445 (773)
47 2wv9_A Flavivirin protease NS2 100.0 2.3E-38 7.8E-43 328.5 16.9 307 42-450 202-544 (673)
48 3o8b_A HCV NS3 protease/helica 100.0 3E-38 1E-42 322.2 17.1 281 50-446 217-518 (666)
49 2z83_A Helicase/nucleoside tri 100.0 3.5E-38 1.2E-42 316.8 14.0 269 67-442 19-313 (459)
50 3h1t_A Type I site-specific re 100.0 1.2E-36 4E-41 317.2 20.4 308 50-431 178-545 (590)
51 3dmq_A RNA polymerase-associat 100.0 2.6E-36 8.8E-41 327.7 22.9 124 316-441 487-612 (968)
52 2v6i_A RNA helicase; membrane, 100.0 2.3E-36 7.7E-41 301.1 20.2 269 69-439 2-288 (431)
53 3rc3_A ATP-dependent RNA helic 100.0 5.9E-35 2E-39 301.9 20.8 284 67-453 153-455 (677)
54 1z63_A Helicase of the SNF2/RA 100.0 5.9E-35 2E-39 298.8 19.9 317 49-444 36-455 (500)
55 3jux_A Protein translocase sub 100.0 1.6E-32 5.4E-37 275.3 32.6 386 46-455 72-607 (822)
56 3fe2_A Probable ATP-dependent 100.0 7.3E-34 2.5E-38 261.7 20.8 212 17-298 24-239 (242)
57 3ber_A Probable ATP-dependent 100.0 9.2E-33 3.1E-37 254.8 20.5 199 34-296 49-247 (249)
58 3fmo_B ATP-dependent RNA helic 100.0 8.4E-33 2.9E-37 261.7 19.4 199 34-297 98-298 (300)
59 2pl3_A Probable ATP-dependent 100.0 2.3E-32 7.8E-37 251.0 21.7 209 19-297 22-233 (236)
60 1z3i_X Similar to RAD54-like; 100.0 1E-31 3.5E-36 280.6 28.7 377 50-453 55-541 (644)
61 3iuy_A Probable ATP-dependent 100.0 1.4E-32 4.7E-37 251.0 19.0 209 17-295 14-227 (228)
62 1q0u_A Bstdead; DEAD protein, 100.0 2E-32 7E-37 248.2 18.7 206 22-298 4-213 (219)
63 3ly5_A ATP-dependent RNA helic 100.0 2.1E-32 7.2E-37 254.4 18.8 206 23-291 48-257 (262)
64 2oxc_A Probable ATP-dependent 100.0 4.6E-32 1.6E-36 247.6 20.4 197 34-296 30-228 (230)
65 1vec_A ATP-dependent RNA helic 100.0 4.9E-32 1.7E-36 243.4 20.3 195 35-294 10-205 (206)
66 3mwy_W Chromo domain-containin 100.0 9.7E-32 3.3E-36 287.8 26.1 345 50-454 236-698 (800)
67 3bor_A Human initiation factor 100.0 2.3E-32 7.9E-37 250.7 17.9 206 20-296 28-234 (237)
68 1t6n_A Probable ATP-dependent 100.0 2.6E-31 8.8E-36 241.2 24.0 198 34-295 20-219 (220)
69 1wrb_A DJVLGB; RNA helicase, D 100.0 2.6E-32 8.8E-37 253.3 17.3 213 21-299 22-242 (253)
70 3dkp_A Probable ATP-dependent 100.0 2.2E-32 7.4E-37 252.6 16.7 220 16-298 19-242 (245)
71 1qde_A EIF4A, translation init 100.0 8.5E-32 2.9E-36 245.2 18.5 206 21-298 13-218 (224)
72 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 5.7E-32 2E-36 291.0 19.8 332 37-441 251-708 (1038)
73 2gxq_A Heat resistant RNA depe 100.0 4.6E-31 1.6E-35 237.3 19.8 196 35-296 8-205 (207)
74 2ipc_A Preprotein translocase 100.0 2.6E-27 8.9E-32 242.1 31.2 131 46-210 76-215 (997)
75 1c4o_A DNA nucleotide excision 100.0 9.5E-28 3.2E-32 250.2 26.2 125 317-445 422-553 (664)
76 2hjv_A ATP-dependent RNA helic 100.0 1.2E-27 4.2E-32 205.4 17.7 150 304-456 7-156 (163)
77 2d7d_A Uvrabc system protein B 100.0 8.6E-27 2.9E-31 242.9 26.7 126 317-446 428-560 (661)
78 3eaq_A Heat resistant RNA depe 99.9 5.7E-27 2E-31 210.0 19.2 147 307-456 6-152 (212)
79 1t5i_A C_terminal domain of A 99.9 4.2E-27 1.4E-31 203.6 16.7 148 305-455 4-152 (172)
80 2rb4_A ATP-dependent RNA helic 99.9 4.1E-27 1.4E-31 204.8 16.3 150 304-456 5-161 (175)
81 1fuk_A Eukaryotic initiation f 99.9 6E-27 2.1E-31 201.6 16.9 148 306-456 3-151 (165)
82 2p6n_A ATP-dependent RNA helic 99.9 1.1E-26 3.9E-31 204.0 15.1 164 286-454 10-174 (191)
83 2jgn_A DBX, DDX3, ATP-dependen 99.9 8.2E-27 2.8E-31 204.1 14.0 150 303-455 16-166 (185)
84 3i32_A Heat resistant RNA depe 99.9 1.4E-25 4.7E-30 210.2 19.8 147 307-456 3-149 (300)
85 2vl7_A XPD; helicase, unknown 99.9 4.7E-25 1.6E-29 225.5 19.1 152 46-210 4-188 (540)
86 2yjt_D ATP-dependent RNA helic 99.9 3.9E-27 1.3E-31 203.8 0.0 146 307-455 4-150 (170)
87 3crv_A XPD/RAD3 related DNA he 99.9 6.2E-23 2.1E-27 210.7 23.0 154 47-211 1-187 (551)
88 3b6e_A Interferon-induced heli 99.9 7.9E-23 2.7E-27 184.8 11.9 144 46-215 29-180 (216)
89 4a15_A XPD helicase, ATP-depen 99.9 8.5E-22 2.9E-26 203.6 18.6 88 50-140 3-90 (620)
90 3llm_A ATP-dependent RNA helic 99.9 3.4E-21 1.2E-25 175.9 16.4 180 11-224 1-205 (235)
91 1rif_A DAR protein, DNA helica 99.8 8.4E-21 2.9E-25 178.5 9.8 128 50-212 113-240 (282)
92 1z5z_A Helicase of the SNF2/RA 99.8 4.6E-19 1.6E-23 164.0 14.0 126 315-443 93-225 (271)
93 2fz4_A DNA repair protein RAD2 99.8 4.5E-19 1.5E-23 161.4 11.4 116 50-214 93-209 (237)
94 1w36_D RECD, exodeoxyribonucle 98.6 6.1E-08 2.1E-12 100.1 9.4 86 38-129 136-224 (608)
95 4b3f_X DNA-binding protein smu 98.2 3.6E-06 1.2E-10 87.9 9.2 68 50-124 189-256 (646)
96 2gk6_A Regulator of nonsense t 98.1 2.2E-05 7.6E-10 81.4 14.2 69 49-124 179-247 (624)
97 3hgt_A HDA1 complex subunit 3; 98.1 3.9E-05 1.3E-09 70.9 12.9 127 315-449 106-244 (328)
98 2xzl_A ATP-dependent helicase 98.0 4.2E-05 1.4E-09 81.2 14.2 69 49-124 359-427 (802)
99 3upu_A ATP-dependent DNA helic 98.0 6.4E-06 2.2E-10 82.3 7.4 73 46-121 21-94 (459)
100 2wjy_A Regulator of nonsense t 98.0 5.2E-05 1.8E-09 80.3 13.9 69 49-124 355-423 (800)
101 3e1s_A Exodeoxyribonuclease V, 97.8 4.8E-05 1.6E-09 77.7 9.5 63 50-120 189-251 (574)
102 3lfu_A DNA helicase II; SF1 he 97.4 0.00032 1.1E-08 73.4 8.5 82 49-136 8-91 (647)
103 1uaa_A REP helicase, protein ( 97.2 0.00076 2.6E-08 70.8 8.3 82 50-137 2-86 (673)
104 1pjr_A PCRA; DNA repair, DNA r 97.0 0.0014 4.8E-08 69.2 8.8 83 49-137 10-94 (724)
105 3vkw_A Replicase large subunit 97.0 0.00076 2.6E-08 65.5 5.6 45 70-123 162-206 (446)
106 1xx6_A Thymidine kinase; NESG, 96.7 0.0048 1.7E-07 53.0 8.2 39 68-110 7-45 (191)
107 2o0j_A Terminase, DNA packagin 96.7 0.0029 1E-07 60.6 7.2 71 50-126 163-233 (385)
108 2orw_A Thymidine kinase; TMTK, 96.6 0.00074 2.5E-08 57.9 2.4 39 69-111 3-41 (184)
109 3cpe_A Terminase, DNA packagin 96.6 0.0034 1.2E-07 64.6 7.6 72 50-127 163-234 (592)
110 3ec2_A DNA replication protein 96.6 0.0062 2.1E-07 51.9 7.9 21 68-88 37-57 (180)
111 1a5t_A Delta prime, HOLB; zinc 96.4 0.0093 3.2E-07 56.5 8.7 38 51-88 3-43 (334)
112 2j9r_A Thymidine kinase; TK1, 96.3 0.0054 1.8E-07 53.2 6.0 39 69-111 28-66 (214)
113 2b8t_A Thymidine kinase; deoxy 96.3 0.006 2.1E-07 53.7 6.1 40 68-111 11-50 (223)
114 3te6_A Regulatory protein SIR3 96.1 0.018 6.3E-07 53.6 8.9 27 68-95 44-70 (318)
115 3u4q_A ATP-dependent helicase/ 96.1 0.0088 3E-07 67.0 7.9 69 50-124 10-80 (1232)
116 3e2i_A Thymidine kinase; Zn-bi 96.0 0.0043 1.5E-07 53.7 3.8 39 69-111 28-66 (219)
117 1w4r_A Thymidine kinase; type 95.9 0.0059 2E-07 52.1 4.0 38 69-110 20-57 (195)
118 1l8q_A Chromosomal replication 95.4 0.076 2.6E-06 49.9 10.2 36 69-108 37-72 (324)
119 2orv_A Thymidine kinase; TP4A 95.3 0.012 4E-07 51.7 3.9 39 69-111 19-57 (234)
120 2chg_A Replication factor C sm 94.9 0.19 6.5E-06 43.8 10.8 18 70-87 39-56 (226)
121 2zpa_A Uncharacterized protein 94.9 0.044 1.5E-06 56.1 7.1 57 50-115 175-231 (671)
122 2v1u_A Cell division control p 94.9 0.11 3.6E-06 50.1 9.7 21 68-88 43-63 (387)
123 2z4s_A Chromosomal replication 94.8 0.19 6.6E-06 49.3 11.5 39 69-109 130-168 (440)
124 2gno_A DNA polymerase III, gam 94.5 0.081 2.8E-06 49.1 7.5 19 70-88 19-37 (305)
125 1jbk_A CLPB protein; beta barr 94.5 0.31 1E-05 41.2 10.8 19 69-87 43-61 (195)
126 1d2n_A N-ethylmaleimide-sensit 94.3 0.28 9.7E-06 44.5 10.7 20 69-88 64-83 (272)
127 1gm5_A RECG; helicase, replica 94.3 0.11 3.8E-06 54.8 8.7 81 331-411 416-498 (780)
128 3u61_B DNA polymerase accessor 94.2 0.21 7.1E-06 46.8 9.8 14 197-210 105-118 (324)
129 3vfd_A Spastin; ATPase, microt 94.2 0.23 8E-06 47.9 10.3 19 69-87 148-166 (389)
130 1iqp_A RFCS; clamp loader, ext 93.6 0.083 2.9E-06 49.5 5.9 18 70-87 47-64 (327)
131 1sxj_D Activator 1 41 kDa subu 93.6 0.077 2.6E-06 50.4 5.6 18 70-87 59-76 (353)
132 3hjh_A Transcription-repair-co 93.5 0.55 1.9E-05 46.4 11.6 53 68-127 13-65 (483)
133 2hjv_A ATP-dependent RNA helic 93.4 0.84 2.9E-05 37.6 11.0 78 101-206 35-112 (163)
134 3oiy_A Reverse gyrase helicase 93.2 0.34 1.2E-05 47.1 9.6 81 331-411 63-147 (414)
135 2qby_B CDC6 homolog 3, cell di 92.9 0.35 1.2E-05 46.4 9.1 19 69-87 45-63 (384)
136 3kl4_A SRP54, signal recogniti 92.5 0.39 1.3E-05 46.7 8.8 35 70-108 98-132 (433)
137 1njg_A DNA polymerase III subu 92.4 0.8 2.7E-05 40.2 10.2 18 70-87 46-63 (250)
138 3pvs_A Replication-associated 92.2 0.17 5.7E-06 49.8 5.7 18 70-87 51-68 (447)
139 2qby_A CDC6 homolog 1, cell di 92.1 0.65 2.2E-05 44.4 10.0 20 68-87 44-63 (386)
140 2rb4_A ATP-dependent RNA helic 91.9 1.4 4.9E-05 36.7 10.6 76 101-204 34-109 (175)
141 1fuk_A Eukaryotic initiation f 91.9 1.6 5.6E-05 35.9 10.9 77 101-205 30-106 (165)
142 2z43_A DNA repair and recombin 91.8 1.6 5.4E-05 40.7 11.9 53 58-110 95-150 (324)
143 1t5i_A C_terminal domain of A 91.7 1.3 4.6E-05 36.8 10.2 78 101-206 31-108 (172)
144 2jgn_A DBX, DDX3, ATP-dependen 91.4 0.7 2.4E-05 39.1 8.2 78 100-205 45-122 (185)
145 3dm5_A SRP54, signal recogniti 91.4 1.1 3.6E-05 43.7 10.3 62 70-138 101-164 (443)
146 3eaq_A Heat resistant RNA depe 91.1 1.7 5.9E-05 37.6 10.6 75 101-203 31-105 (212)
147 2w58_A DNAI, primosome compone 91.0 0.2 7E-06 43.1 4.4 24 70-94 55-78 (202)
148 1fnn_A CDC6P, cell division co 90.9 0.31 1.1E-05 46.8 6.2 17 71-87 46-62 (389)
149 2p6n_A ATP-dependent RNA helic 90.9 2.8 9.5E-05 35.5 11.6 76 102-205 55-130 (191)
150 1sxj_B Activator 1 37 kDa subu 90.6 0.61 2.1E-05 43.3 7.8 18 70-87 43-60 (323)
151 3n70_A Transport activator; si 90.6 0.18 6.3E-06 40.8 3.5 21 67-87 22-42 (145)
152 3cmu_A Protein RECA, recombina 90.5 0.37 1.3E-05 55.7 7.0 50 59-112 1415-1466(2050)
153 2eyq_A TRCF, transcription-rep 90.3 0.92 3.2E-05 50.3 9.8 79 331-409 651-731 (1151)
154 4ddu_A Reverse gyrase; topoiso 90.2 0.47 1.6E-05 52.3 7.4 81 331-411 120-204 (1104)
155 1jr3_A DNA polymerase III subu 90.0 0.58 2E-05 44.6 7.2 18 70-87 39-56 (373)
156 3io5_A Recombination and repai 89.9 0.45 1.5E-05 43.9 5.8 45 66-113 26-70 (333)
157 1xp8_A RECA protein, recombina 89.8 0.2 6.7E-06 47.7 3.5 49 58-110 61-111 (366)
158 3hr8_A Protein RECA; alpha and 88.8 0.25 8.7E-06 46.7 3.4 49 59-111 49-99 (356)
159 1tue_A Replication protein E1; 88.7 0.46 1.6E-05 40.8 4.7 48 37-86 28-75 (212)
160 1t6n_A Probable ATP-dependent 87.6 2.2 7.5E-05 37.0 8.7 76 332-410 82-165 (220)
161 3i5x_A ATP-dependent RNA helic 87.6 5.5 0.00019 40.2 12.9 100 80-205 319-418 (563)
162 3co5_A Putative two-component 87.5 0.22 7.5E-06 40.2 1.9 18 68-85 26-43 (143)
163 2i4i_A ATP-dependent RNA helic 87.3 3.9 0.00013 39.3 11.2 76 100-203 275-350 (417)
164 2qgz_A Helicase loader, putati 87.2 0.66 2.3E-05 43.0 5.2 22 69-90 152-173 (308)
165 3ber_A Probable ATP-dependent 87.0 2.8 9.6E-05 37.3 9.1 76 331-410 110-193 (249)
166 3iuy_A Probable ATP-dependent 87.0 1.4 4.9E-05 38.4 7.1 76 331-410 93-174 (228)
167 3u4q_B ATP-dependent helicase/ 86.4 0.72 2.5E-05 51.5 5.9 40 73-113 5-44 (1166)
168 1e9r_A Conjugal transfer prote 86.3 0.61 2.1E-05 45.7 4.7 43 69-115 53-95 (437)
169 2d7d_A Uvrabc system protein B 86.3 2.6 8.9E-05 43.6 9.6 80 100-208 444-524 (661)
170 3sqw_A ATP-dependent RNA helic 86.2 7.5 0.00026 39.5 13.0 82 100-206 287-368 (579)
171 3i32_A Heat resistant RNA depe 85.8 3.3 0.00011 38.0 9.1 77 101-205 28-104 (300)
172 2w0m_A SSO2452; RECA, SSPF, un 85.8 0.95 3.3E-05 39.6 5.3 47 58-108 11-58 (235)
173 2kjq_A DNAA-related protein; s 85.7 1.7 5.8E-05 35.2 6.3 20 68-87 35-54 (149)
174 3syl_A Protein CBBX; photosynt 85.7 1 3.5E-05 41.6 5.7 21 68-88 66-86 (309)
175 2p65_A Hypothetical protein PF 85.6 0.89 3.1E-05 38.0 4.9 20 69-88 43-62 (187)
176 3bh0_A DNAB-like replicative h 85.2 1.2 4.2E-05 41.3 6.0 62 57-123 56-117 (315)
177 2zts_A Putative uncharacterize 84.9 0.62 2.1E-05 41.4 3.7 55 66-124 27-81 (251)
178 2r44_A Uncharacterized protein 84.7 0.27 9.1E-06 46.2 1.2 33 55-87 32-64 (331)
179 2oap_1 GSPE-2, type II secreti 84.6 1.7 5.7E-05 43.4 6.9 40 41-85 237-276 (511)
180 2c9o_A RUVB-like 1; hexameric 84.3 0.78 2.7E-05 45.2 4.3 21 67-87 61-81 (456)
181 1c4o_A DNA nucleotide excision 84.1 3.8 0.00013 42.4 9.6 80 100-208 438-518 (664)
182 2ius_A DNA translocase FTSK; n 84.1 0.99 3.4E-05 44.8 4.9 43 68-110 166-208 (512)
183 1vec_A ATP-dependent RNA helic 84.0 5.5 0.00019 33.8 9.3 74 332-409 71-152 (206)
184 3bor_A Human initiation factor 83.9 1.9 6.6E-05 37.9 6.5 76 331-409 97-179 (237)
185 2cvh_A DNA repair and recombin 83.9 1.1 3.7E-05 38.9 4.7 33 58-90 8-41 (220)
186 2dr3_A UPF0273 protein PH0284; 83.8 1 3.5E-05 39.9 4.6 53 66-123 20-72 (247)
187 3hws_A ATP-dependent CLP prote 83.8 0.54 1.8E-05 44.8 2.8 21 68-88 50-70 (363)
188 1u0j_A DNA replication protein 83.7 2 6.7E-05 38.6 6.3 48 37-87 73-122 (267)
189 2iut_A DNA translocase FTSK; n 83.5 1.1 3.7E-05 45.0 4.9 43 69-111 214-256 (574)
190 2eyu_A Twitching motility prot 83.1 0.72 2.5E-05 41.5 3.3 21 66-86 22-42 (261)
191 3fe2_A Probable ATP-dependent 83.0 2.5 8.4E-05 37.4 6.8 75 332-410 102-183 (242)
192 2bjv_A PSP operon transcriptio 82.8 1.2 4.2E-05 40.0 4.8 20 68-87 28-47 (265)
193 3nbx_X ATPase RAVA; AAA+ ATPas 82.4 0.29 9.9E-06 48.7 0.3 32 55-86 27-58 (500)
194 3bos_A Putative DNA replicatio 82.2 1.4 4.8E-05 38.6 4.9 20 68-87 51-70 (242)
195 4ag6_A VIRB4 ATPase, type IV s 82.0 1.2 4.1E-05 42.9 4.6 41 68-112 34-74 (392)
196 2gxq_A Heat resistant RNA depe 82.0 4.6 0.00016 34.4 8.0 73 332-409 72-150 (207)
197 2db3_A ATP-dependent RNA helic 81.8 7.7 0.00026 37.7 10.4 74 103-204 302-375 (434)
198 3fht_A ATP-dependent RNA helic 81.8 4.8 0.00017 38.5 9.0 74 101-203 266-340 (412)
199 3bgw_A DNAB-like replicative h 81.5 1.7 5.8E-05 42.5 5.5 48 58-109 186-233 (444)
200 3vkg_A Dynein heavy chain, cyt 81.3 2 6.7E-05 52.2 6.7 53 35-88 873-925 (3245)
201 2oxc_A Probable ATP-dependent 81.3 3.1 0.00011 36.3 6.7 74 331-409 91-172 (230)
202 2v1x_A ATP-dependent DNA helic 81.2 6.9 0.00024 39.8 10.1 59 332-393 84-144 (591)
203 1oyw_A RECQ helicase, ATP-depe 80.9 3.4 0.00012 41.4 7.6 59 332-393 65-123 (523)
204 1ofh_A ATP-dependent HSL prote 80.9 0.5 1.7E-05 43.7 1.4 19 69-87 50-68 (310)
205 3pey_A ATP-dependent RNA helic 80.6 6.6 0.00023 37.2 9.4 78 101-207 243-321 (395)
206 1vma_A Cell division protein F 80.3 14 0.00049 33.8 11.0 20 70-89 105-124 (306)
207 3a8t_A Adenylate isopentenyltr 80.2 0.85 2.9E-05 42.5 2.6 19 69-87 40-58 (339)
208 1xti_A Probable ATP-dependent 80.0 7.3 0.00025 36.9 9.5 80 100-207 249-328 (391)
209 2qmh_A HPR kinase/phosphorylas 79.9 0.91 3.1E-05 38.7 2.5 18 69-86 34-51 (205)
210 4a1f_A DNAB helicase, replicat 79.5 2.4 8.1E-05 39.7 5.5 48 58-109 35-82 (338)
211 2chq_A Replication factor C sm 79.4 1.9 6.4E-05 39.8 4.9 17 71-87 40-56 (319)
212 1ex7_A Guanylate kinase; subst 79.1 0.91 3.1E-05 38.4 2.3 16 70-85 2-17 (186)
213 1p9r_A General secretion pathw 79.1 1.5 5.2E-05 42.4 4.2 39 53-94 153-191 (418)
214 1kgd_A CASK, peripheral plasma 78.9 1.3 4.5E-05 37.1 3.3 19 68-86 4-22 (180)
215 3cf0_A Transitional endoplasmi 78.6 1.3 4.6E-05 40.7 3.5 20 68-87 48-67 (301)
216 1w36_B RECB, exodeoxyribonucle 78.6 3.8 0.00013 45.6 7.7 56 70-125 17-80 (1180)
217 1s2m_A Putative ATP-dependent 78.5 10 0.00035 36.1 10.0 76 101-205 258-334 (400)
218 2qz4_A Paraplegin; AAA+, SPG7, 78.5 1.3 4.6E-05 39.5 3.5 20 68-87 38-57 (262)
219 1ojl_A Transcriptional regulat 78.5 1.5 5E-05 40.6 3.7 20 68-87 24-43 (304)
220 3uk6_A RUVB-like 2; hexameric 78.3 1.8 6.2E-05 41.0 4.5 21 68-88 69-89 (368)
221 4b4t_J 26S protease regulatory 78.3 1.8 6.2E-05 41.4 4.3 20 68-87 181-200 (405)
222 3h4m_A Proteasome-activating n 78.3 1.4 4.7E-05 40.1 3.5 20 68-87 50-69 (285)
223 2zr9_A Protein RECA, recombina 78.3 2.3 7.9E-05 40.1 5.1 49 58-110 48-98 (349)
224 4b4t_M 26S protease regulatory 77.8 1.7 5.9E-05 42.1 4.1 20 68-87 214-233 (434)
225 3exa_A TRNA delta(2)-isopenten 77.7 1.1 3.8E-05 41.2 2.6 19 69-87 3-21 (322)
226 2j0s_A ATP-dependent RNA helic 77.6 6.8 0.00023 37.5 8.5 76 102-205 277-352 (410)
227 1u94_A RECA protein, recombina 77.6 2.8 9.4E-05 39.6 5.4 48 58-109 50-99 (356)
228 3iij_A Coilin-interacting nucl 77.2 2 7E-05 35.8 4.0 20 68-87 10-29 (180)
229 1wp9_A ATP-dependent RNA helic 77.2 11 0.00039 36.6 10.2 100 78-207 340-447 (494)
230 3foz_A TRNA delta(2)-isopenten 77.0 1.3 4.5E-05 40.7 2.8 18 70-87 11-28 (316)
231 1hv8_A Putative ATP-dependent 76.8 9 0.00031 35.8 9.0 78 100-205 237-314 (367)
232 4akg_A Glutathione S-transfera 76.8 1.8 6.2E-05 51.9 4.6 53 35-88 890-942 (2695)
233 2r2a_A Uncharacterized protein 76.7 1.9 6.6E-05 36.9 3.7 22 71-92 7-28 (199)
234 3vaa_A Shikimate kinase, SK; s 76.7 1.5 5.2E-05 37.4 3.1 20 68-87 24-43 (199)
235 3trf_A Shikimate kinase, SK; a 76.6 1.5 5.1E-05 36.8 3.0 20 69-88 5-24 (185)
236 1qhx_A CPT, protein (chloramph 76.5 1.3 4.5E-05 36.8 2.6 19 69-87 3-21 (178)
237 4fcw_A Chaperone protein CLPB; 76.4 0.49 1.7E-05 43.8 -0.2 18 70-87 48-65 (311)
238 3b9p_A CG5977-PA, isoform A; A 76.4 1.4 4.9E-05 40.3 3.0 19 69-87 54-72 (297)
239 4b4t_K 26S protease regulatory 76.3 2.1 7.1E-05 41.5 4.2 20 68-87 205-224 (428)
240 3tau_A Guanylate kinase, GMP k 76.3 1.6 5.4E-05 37.7 3.1 19 68-86 7-25 (208)
241 1q57_A DNA primase/helicase; d 76.2 2.9 9.9E-05 41.7 5.4 59 59-121 232-290 (503)
242 2q6t_A DNAB replication FORK h 76.2 4 0.00014 39.9 6.3 49 58-109 189-237 (444)
243 3t15_A Ribulose bisphosphate c 76.0 1.6 5.6E-05 40.0 3.3 19 69-87 36-54 (293)
244 4b4t_L 26S protease subunit RP 76.0 2.1 7.1E-05 41.6 4.1 20 68-87 214-233 (437)
245 1qde_A EIF4A, translation init 75.8 3.3 0.00011 35.9 5.2 74 331-409 81-161 (224)
246 3ly5_A ATP-dependent RNA helic 75.7 14 0.00047 32.9 9.4 75 331-409 125-207 (262)
247 1n0w_A DNA repair protein RAD5 75.7 2.9 9.8E-05 36.8 4.8 33 59-91 13-46 (243)
248 2r6a_A DNAB helicase, replicat 75.3 4.3 0.00015 39.8 6.3 49 58-109 192-240 (454)
249 2qor_A Guanylate kinase; phosp 75.2 2.2 7.4E-05 36.6 3.7 21 66-86 9-29 (204)
250 2gza_A Type IV secretion syste 75.2 2.5 8.6E-05 40.0 4.4 18 68-85 174-191 (361)
251 3eie_A Vacuolar protein sortin 75.1 1.6 5.3E-05 40.7 2.9 19 69-87 51-69 (322)
252 3f9v_A Minichromosome maintena 75.0 2.1 7.3E-05 43.6 4.1 15 71-85 329-343 (595)
253 1xwi_A SKD1 protein; VPS4B, AA 75.0 1.6 5.4E-05 40.7 2.9 19 69-87 45-63 (322)
254 1wrb_A DJVLGB; RNA helicase, D 74.9 9.3 0.00032 33.7 8.0 74 332-409 100-180 (253)
255 1lv7_A FTSH; alpha/beta domain 74.7 1.7 5.7E-05 38.9 2.9 19 69-87 45-63 (257)
256 4b4t_H 26S protease regulatory 74.6 4.5 0.00015 39.4 6.0 20 68-87 242-261 (467)
257 1cr0_A DNA primase/helicase; R 74.6 3.8 0.00013 37.4 5.4 48 58-108 24-71 (296)
258 2pl3_A Probable ATP-dependent 74.5 10 0.00036 32.9 8.2 74 331-409 96-177 (236)
259 3ney_A 55 kDa erythrocyte memb 73.9 2.3 7.8E-05 36.3 3.4 19 68-86 18-36 (197)
260 2r8r_A Sensor protein; KDPD, P 73.9 3.5 0.00012 35.9 4.6 26 71-96 8-33 (228)
261 2yjt_D ATP-dependent RNA helic 76.0 0.67 2.3E-05 38.6 0.0 76 101-205 30-106 (170)
262 3cmw_A Protein RECA, recombina 73.8 2.1 7.2E-05 48.9 4.0 45 68-116 1430-1474(1706)
263 2qp9_X Vacuolar protein sortin 73.6 2 6.8E-05 40.7 3.3 19 69-87 84-102 (355)
264 1um8_A ATP-dependent CLP prote 73.6 2.1 7E-05 40.9 3.4 20 68-87 71-90 (376)
265 1lvg_A Guanylate kinase, GMP k 73.4 2.1 7.2E-05 36.5 3.1 19 68-86 3-21 (198)
266 2pt7_A CAG-ALFA; ATPase, prote 73.4 3.2 0.00011 38.8 4.5 18 68-85 170-187 (330)
267 4b4t_I 26S protease regulatory 73.2 2.8 9.5E-05 40.4 4.1 20 68-87 215-234 (437)
268 1zp6_A Hypothetical protein AT 73.2 1.7 6E-05 36.6 2.5 19 67-85 7-25 (191)
269 2ze6_A Isopentenyl transferase 73.2 1.9 6.5E-05 38.5 2.9 17 71-87 3-19 (253)
270 1j8m_F SRP54, signal recogniti 72.9 17 0.00058 33.1 9.3 36 69-108 98-133 (297)
271 3pfi_A Holliday junction ATP-d 72.9 3 0.0001 39.0 4.3 19 69-87 55-73 (338)
272 1sxj_C Activator 1 40 kDa subu 72.8 1.4 4.9E-05 41.4 2.0 17 71-87 48-64 (340)
273 3lw7_A Adenylate kinase relate 72.7 1.6 5.4E-05 36.0 2.1 17 71-87 3-19 (179)
274 1y63_A LMAJ004144AAA protein; 72.6 2.6 9E-05 35.3 3.5 20 68-87 9-28 (184)
275 2ffh_A Protein (FFH); SRP54, s 72.4 23 0.0008 34.1 10.5 36 69-108 98-133 (425)
276 3fmo_B ATP-dependent RNA helic 72.4 5.3 0.00018 36.6 5.8 87 317-410 142-242 (300)
277 1kag_A SKI, shikimate kinase I 72.3 2.6 8.9E-05 34.8 3.4 18 69-86 4-21 (173)
278 2j41_A Guanylate kinase; GMP, 72.0 2.5 8.5E-05 36.1 3.3 19 68-86 5-23 (207)
279 2r62_A Cell division protease 71.8 1.5 5.1E-05 39.5 1.9 19 69-87 44-62 (268)
280 1g5t_A COB(I)alamin adenosyltr 71.6 5 0.00017 34.0 4.9 35 69-107 28-62 (196)
281 2ehv_A Hypothetical protein PH 71.4 4.5 0.00015 35.6 5.0 25 66-90 27-51 (251)
282 3d8b_A Fidgetin-like protein 1 71.3 2.3 7.8E-05 40.3 3.1 19 69-87 117-135 (357)
283 3crm_A TRNA delta(2)-isopenten 71.3 2.2 7.4E-05 39.6 2.8 18 70-87 6-23 (323)
284 3dc4_A Kinesin-like protein NO 71.0 1.1 3.8E-05 42.0 0.8 36 51-86 71-112 (344)
285 2oca_A DAR protein, ATP-depend 71.0 9.7 0.00033 37.8 7.9 78 103-207 349-426 (510)
286 4a14_A Kinesin, kinesin-like p 71.0 1.4 4.8E-05 41.4 1.5 36 51-86 60-101 (344)
287 2i1q_A DNA repair and recombin 70.8 4.6 0.00016 37.4 5.1 34 59-92 87-121 (322)
288 3tr0_A Guanylate kinase, GMP k 70.8 2.6 8.8E-05 36.0 3.1 19 68-86 6-24 (205)
289 3bfn_A Kinesin-like protein KI 70.5 1.8 6.3E-05 41.1 2.2 36 51-86 75-116 (388)
290 3k1j_A LON protease, ATP-depen 70.4 1.7 5.8E-05 44.6 2.1 33 55-87 46-78 (604)
291 3d3q_A TRNA delta(2)-isopenten 70.3 2.4 8.2E-05 39.6 2.9 18 70-87 8-25 (340)
292 1sxj_E Activator 1 40 kDa subu 70.2 3.8 0.00013 38.5 4.4 18 70-87 37-54 (354)
293 3a00_A Guanylate kinase, GMP k 70.2 2.9 0.0001 35.1 3.3 17 70-86 2-18 (186)
294 2ewv_A Twitching motility prot 70.0 2.2 7.6E-05 40.6 2.7 20 67-86 134-153 (372)
295 1gku_B Reverse gyrase, TOP-RG; 69.8 8.3 0.00028 42.3 7.5 77 331-409 98-181 (1054)
296 3jvv_A Twitching mobility prot 69.6 2.3 7.8E-05 40.2 2.7 26 69-95 123-148 (356)
297 2px0_A Flagellar biosynthesis 69.4 4.6 0.00016 37.0 4.6 23 68-90 104-126 (296)
298 1ixz_A ATP-dependent metallopr 69.3 3.2 0.00011 36.9 3.5 18 69-86 49-66 (254)
299 3pxg_A Negative regulator of g 69.3 2 7E-05 42.3 2.3 21 68-88 200-220 (468)
300 1v5w_A DMC1, meiotic recombina 68.9 5 0.00017 37.6 4.9 52 59-110 111-165 (343)
301 1hqc_A RUVB; extended AAA-ATPa 68.5 2.4 8.3E-05 39.2 2.6 19 69-87 38-56 (324)
302 1z6g_A Guanylate kinase; struc 68.4 3.5 0.00012 35.8 3.4 19 67-85 21-39 (218)
303 3b85_A Phosphate starvation-in 68.1 4.4 0.00015 34.8 4.0 32 52-87 9-40 (208)
304 1goj_A Kinesin, kinesin heavy 68.0 1.8 6.2E-05 40.7 1.6 36 51-86 57-98 (355)
305 1ly1_A Polynucleotide kinase; 68.0 2.3 8E-05 35.3 2.2 16 71-86 4-19 (181)
306 3eph_A TRNA isopentenyltransfe 68.0 2.5 8.5E-05 40.4 2.5 18 71-88 4-21 (409)
307 1f9v_A Kinesin-like protein KA 68.0 2.7 9.3E-05 39.4 2.7 35 52-86 63-102 (347)
308 4eun_A Thermoresistant glucoki 67.7 3.3 0.00011 35.3 3.1 20 68-87 28-47 (200)
309 1kht_A Adenylate kinase; phosp 67.5 3.2 0.00011 34.8 2.9 19 69-87 3-21 (192)
310 3kb2_A SPBC2 prophage-derived 67.4 3.1 0.00011 34.2 2.8 17 71-87 3-19 (173)
311 4gp7_A Metallophosphoesterase; 67.4 2.2 7.4E-05 35.4 1.8 20 68-87 8-27 (171)
312 1bg2_A Kinesin; motor protein, 67.3 1.5 5.2E-05 40.7 0.9 36 51-86 54-95 (325)
313 2zan_A Vacuolar protein sortin 67.0 3 0.0001 40.8 3.0 19 69-87 167-185 (444)
314 2xau_A PRE-mRNA-splicing facto 66.6 22 0.00074 37.5 9.6 84 101-203 303-393 (773)
315 2x8a_A Nuclear valosin-contain 66.5 4 0.00014 36.9 3.5 18 69-86 44-61 (274)
316 4a74_A DNA repair and recombin 66.4 3.1 0.00011 36.2 2.7 30 59-88 14-44 (231)
317 3t0q_A AGR253WP; kinesin, alph 66.4 2.7 9.3E-05 39.5 2.4 36 51-86 63-103 (349)
318 2l8b_A Protein TRAI, DNA helic 66.0 13 0.00044 31.0 6.0 59 53-116 37-95 (189)
319 3nwn_A Kinesin-like protein KI 66.0 1.5 5.2E-05 41.3 0.6 33 54-86 84-122 (359)
320 3lre_A Kinesin-like protein KI 65.9 2 7E-05 40.4 1.4 36 51-86 82-123 (355)
321 2p5t_B PEZT; postsegregational 65.7 5.4 0.00018 35.5 4.2 19 69-87 32-50 (253)
322 2rhm_A Putative kinase; P-loop 65.4 2.7 9.3E-05 35.4 2.1 19 69-87 5-23 (193)
323 1knq_A Gluconate kinase; ALFA/ 65.4 3.4 0.00012 34.2 2.7 19 69-87 8-26 (175)
324 3cm0_A Adenylate kinase; ATP-b 65.3 2.7 9.3E-05 35.1 2.1 19 69-87 4-22 (186)
325 3b6u_A Kinesin-like protein KI 65.1 1.7 5.9E-05 41.1 0.8 36 51-86 78-119 (372)
326 1iy2_A ATP-dependent metallopr 65.1 4.4 0.00015 36.6 3.6 19 69-87 73-91 (278)
327 1g41_A Heat shock protein HSLU 64.9 4.3 0.00015 39.4 3.6 20 68-87 49-68 (444)
328 3c8u_A Fructokinase; YP_612366 64.9 4.8 0.00016 34.5 3.6 18 68-85 21-38 (208)
329 1g8p_A Magnesium-chelatase 38 64.8 2.4 8.3E-05 39.7 1.8 19 69-87 45-63 (350)
330 3hu3_A Transitional endoplasmi 64.6 4.3 0.00015 40.2 3.6 20 68-87 237-256 (489)
331 2y65_A Kinesin, kinesin heavy 64.6 1.8 6.3E-05 40.8 0.9 36 51-86 61-102 (365)
332 1in4_A RUVB, holliday junction 64.5 3.9 0.00013 38.2 3.2 18 70-87 52-69 (334)
333 1nlf_A Regulatory protein REPA 64.4 9.4 0.00032 34.4 5.7 26 66-91 27-52 (279)
334 2v54_A DTMP kinase, thymidylat 64.1 4.8 0.00016 34.2 3.4 20 68-87 3-22 (204)
335 2v9p_A Replication protein E1; 64.0 5.5 0.00019 36.6 4.0 29 57-85 114-142 (305)
336 1znw_A Guanylate kinase, GMP k 64.0 4.3 0.00015 34.7 3.2 19 68-86 19-37 (207)
337 2vvg_A Kinesin-2; motor protei 63.8 1.8 6E-05 40.7 0.6 36 51-86 66-107 (350)
338 1c9k_A COBU, adenosylcobinamid 63.8 4 0.00014 34.1 2.7 43 72-122 2-44 (180)
339 1x88_A Kinesin-like protein KI 63.7 1.9 6.5E-05 40.7 0.8 36 51-86 65-106 (359)
340 1zd8_A GTP:AMP phosphotransfer 63.6 3.8 0.00013 35.7 2.7 19 69-87 7-25 (227)
341 1zuh_A Shikimate kinase; alpha 63.3 4.2 0.00014 33.3 2.9 18 70-87 8-25 (168)
342 2qt1_A Nicotinamide riboside k 63.3 3.8 0.00013 35.1 2.6 21 66-86 18-38 (207)
343 2zfi_A Kinesin-like protein KI 63.3 2.2 7.4E-05 40.4 1.1 34 53-86 68-107 (366)
344 3uie_A Adenylyl-sulfate kinase 63.2 3.8 0.00013 34.8 2.6 20 68-87 24-43 (200)
345 2l82_A Designed protein OR32; 63.0 33 0.0011 25.2 7.0 112 335-454 5-125 (162)
346 1zak_A Adenylate kinase; ATP:A 62.7 4.9 0.00017 34.8 3.3 19 69-87 5-23 (222)
347 3gbj_A KIF13B protein; kinesin 62.7 2.3 7.7E-05 40.1 1.1 34 53-86 71-110 (354)
348 1yks_A Genome polyprotein [con 62.5 14 0.00049 35.9 6.9 69 101-202 177-245 (440)
349 2iyv_A Shikimate kinase, SK; t 62.4 5.2 0.00018 33.3 3.3 18 70-87 3-20 (184)
350 3eiq_A Eukaryotic initiation f 62.4 11 0.00037 36.0 6.1 76 101-205 280-356 (414)
351 2bdt_A BH3686; alpha-beta prot 62.3 3.4 0.00012 34.7 2.1 19 69-87 2-20 (189)
352 2wbe_C Bipolar kinesin KRP-130 62.2 2 7E-05 40.7 0.7 36 51-86 77-118 (373)
353 3cmw_A Protein RECA, recombina 62.0 7.9 0.00027 44.3 5.4 49 58-110 21-71 (1706)
354 1via_A Shikimate kinase; struc 62.0 5 0.00017 33.1 3.1 18 70-87 5-22 (175)
355 3umf_A Adenylate kinase; rossm 62.0 5.9 0.0002 34.3 3.6 21 68-88 28-48 (217)
356 1s96_A Guanylate kinase, GMP k 61.9 4.9 0.00017 34.9 3.1 19 67-85 14-32 (219)
357 3t61_A Gluconokinase; PSI-biol 61.9 4.5 0.00015 34.4 2.8 19 69-87 18-36 (202)
358 1tev_A UMP-CMP kinase; ploop, 61.8 4 0.00014 34.3 2.5 19 69-87 3-21 (196)
359 3pxi_A Negative regulator of g 61.8 1.8 6.3E-05 45.7 0.4 17 71-87 523-539 (758)
360 2rep_A Kinesin-like protein KI 61.7 3.4 0.00012 39.2 2.1 36 51-86 93-133 (376)
361 1z5z_A Helicase of the SNF2/RA 61.5 46 0.0016 29.7 9.6 62 77-145 92-153 (271)
362 3pxi_A Negative regulator of g 61.4 3.4 0.00012 43.6 2.3 21 68-88 200-220 (758)
363 3lnc_A Guanylate kinase, GMP k 61.4 3.6 0.00012 36.0 2.1 19 68-86 26-44 (231)
364 2nr8_A Kinesin-like protein KI 61.4 2.1 7.1E-05 40.4 0.6 34 53-86 82-121 (358)
365 4gl2_A Interferon-induced heli 61.3 7.9 0.00027 40.3 5.1 78 101-203 400-488 (699)
366 2j37_W Signal recognition part 61.3 51 0.0017 32.5 10.6 36 70-109 102-137 (504)
367 3nwj_A ATSK2; P loop, shikimat 61.1 5.6 0.00019 35.3 3.4 19 69-87 48-66 (250)
368 1gvn_B Zeta; postsegregational 61.0 3.1 0.00011 38.0 1.7 19 69-87 33-51 (287)
369 2c95_A Adenylate kinase 1; tra 61.0 4.7 0.00016 33.9 2.8 20 68-87 8-27 (196)
370 1aky_A Adenylate kinase; ATP:A 60.8 5.3 0.00018 34.5 3.1 19 69-87 4-22 (220)
371 1t5c_A CENP-E protein, centrom 60.6 2 6.7E-05 40.4 0.3 36 51-86 54-95 (349)
372 2owm_A Nckin3-434, related to 60.5 2.9 9.9E-05 40.7 1.4 34 53-86 115-154 (443)
373 1zu4_A FTSY; GTPase, signal re 60.1 8.3 0.00028 35.7 4.5 34 70-107 106-139 (320)
374 2ce7_A Cell division protein F 60.1 5.7 0.0002 39.1 3.5 19 69-87 49-67 (476)
375 1q0u_A Bstdead; DEAD protein, 60.1 5.5 0.00019 34.3 3.1 74 332-409 72-156 (219)
376 2v3c_C SRP54, signal recogniti 60.1 8.5 0.00029 37.3 4.7 35 70-108 100-134 (432)
377 1sxj_A Activator 1 95 kDa subu 59.8 4.7 0.00016 40.3 3.0 19 69-87 77-95 (516)
378 3fb4_A Adenylate kinase; psych 59.6 6.2 0.00021 33.9 3.4 17 71-87 2-18 (216)
379 3lda_A DNA repair protein RAD5 59.5 8.7 0.0003 36.8 4.6 42 68-109 177-220 (400)
380 3b6e_A Interferon-induced heli 59.4 7.3 0.00025 33.2 3.8 58 332-393 82-140 (216)
381 1nij_A Hypothetical protein YJ 59.4 6.9 0.00024 36.2 3.8 15 71-85 6-20 (318)
382 2cdn_A Adenylate kinase; phosp 59.4 6.1 0.00021 33.5 3.2 19 69-87 20-38 (201)
383 2h58_A Kinesin-like protein KI 59.2 7 0.00024 36.3 3.7 19 68-86 78-98 (330)
384 1ye8_A Protein THEP1, hypothet 59.0 5.6 0.00019 33.2 2.8 16 71-86 2-17 (178)
385 3cmu_A Protein RECA, recombina 58.9 9.2 0.00032 44.5 5.3 56 58-118 1068-1125(2050)
386 2heh_A KIF2C protein; kinesin, 58.9 2.2 7.5E-05 40.6 0.3 36 51-86 111-152 (387)
387 1e6c_A Shikimate kinase; phosp 58.8 6.3 0.00021 32.3 3.1 18 70-87 3-20 (173)
388 3sr0_A Adenylate kinase; phosp 58.6 6.8 0.00023 33.6 3.4 18 71-88 2-19 (206)
389 3dl0_A Adenylate kinase; phosp 58.5 5.6 0.00019 34.2 2.9 17 71-87 2-18 (216)
390 3ice_A Transcription terminati 58.4 35 0.0012 32.5 8.3 32 55-87 161-192 (422)
391 1ak2_A Adenylate kinase isoenz 58.4 6.1 0.00021 34.5 3.1 19 69-87 16-34 (233)
392 4etp_A Kinesin-like protein KA 58.2 7.4 0.00025 37.3 3.8 20 67-86 137-158 (403)
393 1f2t_A RAD50 ABC-ATPase; DNA d 58.0 6.6 0.00023 31.6 3.0 15 71-85 25-39 (149)
394 2i3b_A HCR-ntpase, human cance 58.0 6.9 0.00024 33.0 3.3 19 69-87 1-19 (189)
395 1fuu_A Yeast initiation factor 57.9 18 0.00061 34.1 6.7 74 331-409 88-168 (394)
396 1rj9_A FTSY, signal recognitio 57.8 11 0.00037 34.6 4.8 36 69-108 102-137 (304)
397 1xjc_A MOBB protein homolog; s 57.5 12 0.00043 30.7 4.6 24 71-95 6-29 (169)
398 1svm_A Large T antigen; AAA+ f 57.5 8.4 0.00029 36.6 4.1 22 65-86 165-186 (377)
399 2yvu_A Probable adenylyl-sulfa 57.3 5.6 0.00019 33.2 2.6 20 68-87 12-31 (186)
400 1v8k_A Kinesin-like protein KI 57.3 6.9 0.00024 37.5 3.4 36 51-86 131-172 (410)
401 2pez_A Bifunctional 3'-phospho 57.2 5.7 0.0002 32.9 2.6 20 68-87 4-23 (179)
402 1nks_A Adenylate kinase; therm 57.2 5.5 0.00019 33.3 2.5 17 71-87 3-19 (194)
403 2plr_A DTMP kinase, probable t 57.2 5.9 0.0002 33.8 2.8 19 69-87 4-22 (213)
404 3b9q_A Chloroplast SRP recepto 57.1 11 0.00038 34.5 4.7 19 69-87 100-118 (302)
405 2jlq_A Serine protease subunit 57.1 28 0.00096 33.8 8.0 67 102-202 189-256 (451)
406 3tif_A Uncharacterized ABC tra 56.8 4.9 0.00017 35.3 2.2 18 67-84 29-46 (235)
407 3m6a_A ATP-dependent protease 56.8 5.9 0.0002 39.8 3.1 20 68-87 107-126 (543)
408 2bwj_A Adenylate kinase 5; pho 56.8 5.8 0.0002 33.4 2.6 19 69-87 12-30 (199)
409 2va8_A SSO2462, SKI2-type heli 56.7 43 0.0015 34.8 9.8 79 101-204 252-363 (715)
410 3tbk_A RIG-I helicase domain; 56.7 16 0.00056 36.4 6.4 75 332-410 52-134 (555)
411 2vli_A Antibiotic resistance p 56.7 4.1 0.00014 33.9 1.6 19 69-87 5-23 (183)
412 1qf9_A UMP/CMP kinase, protein 56.6 5.8 0.0002 33.2 2.6 18 70-87 7-24 (194)
413 1r6b_X CLPA protein; AAA+, N-t 56.4 2.1 7.2E-05 45.3 -0.3 17 71-87 490-506 (758)
414 2wwf_A Thymidilate kinase, put 56.3 6.2 0.00021 33.7 2.8 20 68-87 9-28 (212)
415 1cke_A CK, MSSA, protein (cyti 56.3 6.3 0.00022 34.1 2.9 19 69-87 5-23 (227)
416 3u06_A Protein claret segregat 56.1 7.4 0.00025 37.4 3.4 20 67-86 135-156 (412)
417 3bs4_A Uncharacterized protein 55.8 14 0.00047 33.0 4.9 61 59-124 10-71 (260)
418 3dkp_A Probable ATP-dependent 55.6 7.7 0.00026 34.1 3.4 76 332-410 98-182 (245)
419 3asz_A Uridine kinase; cytidin 55.5 5.6 0.00019 34.0 2.4 18 69-86 6-23 (211)
420 4a2p_A RIG-I, retinoic acid in 55.2 21 0.00073 35.6 7.0 75 332-410 55-137 (556)
421 3tqf_A HPR(Ser) kinase; transf 55.0 5.8 0.0002 32.9 2.1 20 68-87 15-34 (181)
422 2jaq_A Deoxyguanosine kinase; 55.0 6.9 0.00024 33.1 2.8 17 71-87 2-18 (205)
423 3kta_A Chromosome segregation 54.8 6.9 0.00024 32.5 2.7 16 71-86 28-43 (182)
424 1ukz_A Uridylate kinase; trans 54.7 7.1 0.00024 33.1 2.9 17 70-86 16-32 (203)
425 3dmq_A RNA polymerase-associat 54.4 28 0.00094 37.8 8.0 80 100-207 502-584 (968)
426 2pt5_A Shikimate kinase, SK; a 54.3 7.4 0.00025 31.7 2.8 17 71-87 2-18 (168)
427 1jjv_A Dephospho-COA kinase; P 54.1 7.3 0.00025 33.1 2.8 16 71-86 4-19 (206)
428 4a2q_A RIG-I, retinoic acid in 53.9 26 0.00088 37.1 7.6 75 332-410 296-378 (797)
429 2wv9_A Flavivirin protease NS2 53.8 32 0.0011 35.5 8.0 68 101-202 410-478 (673)
430 4e22_A Cytidylate kinase; P-lo 53.8 7.8 0.00027 34.4 3.1 19 68-86 26-44 (252)
431 2f1r_A Molybdopterin-guanine d 53.7 5.1 0.00017 33.2 1.7 16 71-86 4-19 (171)
432 1nn5_A Similar to deoxythymidy 53.6 7.5 0.00026 33.2 2.9 20 68-87 8-27 (215)
433 2z0h_A DTMP kinase, thymidylat 53.6 6 0.00021 33.3 2.2 17 72-88 3-19 (197)
434 1htw_A HI0065; nucleotide-bind 53.5 8.5 0.00029 31.3 3.0 19 67-85 31-49 (158)
435 2vhj_A Ntpase P4, P4; non- hyd 53.5 7.3 0.00025 36.0 2.8 24 68-91 122-145 (331)
436 2cbz_A Multidrug resistance-as 53.3 6 0.00021 34.8 2.2 19 67-85 29-47 (237)
437 3be4_A Adenylate kinase; malar 53.3 6.8 0.00023 33.8 2.5 19 69-87 5-23 (217)
438 2bbw_A Adenylate kinase 4, AK4 53.2 8.3 0.00028 34.0 3.1 18 69-86 27-44 (246)
439 1ry6_A Internal kinesin; kines 53.2 6.2 0.00021 37.2 2.3 36 51-86 60-102 (360)
440 1m7g_A Adenylylsulfate kinase; 53.2 6 0.0002 33.9 2.1 20 68-87 24-43 (211)
441 3a4m_A L-seryl-tRNA(SEC) kinas 53.1 6 0.0002 35.4 2.2 19 69-87 4-22 (260)
442 3tlx_A Adenylate kinase 2; str 53.1 7 0.00024 34.5 2.6 19 69-87 29-47 (243)
443 3tqc_A Pantothenate kinase; bi 53.0 14 0.00048 34.1 4.7 15 72-86 95-109 (321)
444 1tf7_A KAIC; homohexamer, hexa 53.0 12 0.00042 37.3 4.7 39 58-96 27-66 (525)
445 2if2_A Dephospho-COA kinase; a 52.4 7.3 0.00025 33.0 2.6 16 71-86 3-18 (204)
446 2pbr_A DTMP kinase, thymidylat 52.3 8.2 0.00028 32.3 2.8 17 71-87 2-18 (195)
447 3cf2_A TER ATPase, transitiona 52.2 18 0.00063 38.0 5.9 20 68-87 510-529 (806)
448 1e4v_A Adenylate kinase; trans 52.0 7.5 0.00026 33.4 2.6 17 71-87 2-18 (214)
449 2dhr_A FTSH; AAA+ protein, hex 52.0 9.1 0.00031 37.9 3.4 19 69-87 64-82 (499)
450 2xxa_A Signal recognition part 52.0 14 0.00048 35.8 4.7 36 70-108 101-136 (433)
451 3qf7_A RAD50; ABC-ATPase, ATPa 51.7 8.4 0.00029 36.5 3.0 16 71-86 25-40 (365)
452 2og2_A Putative signal recogni 51.6 15 0.0005 34.6 4.7 19 69-87 157-175 (359)
453 1ypw_A Transitional endoplasmi 51.5 8.1 0.00028 41.0 3.2 21 67-87 236-256 (806)
454 1sgw_A Putative ABC transporte 51.3 8.2 0.00028 33.3 2.7 19 67-85 33-51 (214)
455 2xb4_A Adenylate kinase; ATP-b 51.3 8.5 0.00029 33.3 2.8 17 71-87 2-18 (223)
456 3e70_C DPA, signal recognition 50.4 14 0.00049 34.2 4.4 19 69-87 129-147 (328)
457 3rc3_A ATP-dependent RNA helic 50.4 50 0.0017 34.0 8.8 77 103-209 322-401 (677)
458 3nh6_A ATP-binding cassette SU 50.1 7 0.00024 35.9 2.1 19 67-85 78-96 (306)
459 2ghi_A Transport protein; mult 50.1 7.2 0.00025 34.8 2.2 19 67-85 44-62 (260)
460 1ls1_A Signal recognition part 49.9 15 0.00053 33.4 4.4 20 69-88 98-117 (295)
461 1uf9_A TT1252 protein; P-loop, 49.9 8.4 0.00029 32.5 2.5 18 70-87 9-26 (203)
462 2z0m_A 337AA long hypothetical 49.7 28 0.00097 31.8 6.5 73 332-409 56-135 (337)
463 3foj_A Uncharacterized protein 49.1 18 0.00062 26.4 4.0 36 332-370 56-91 (100)
464 2fsf_A Preprotein translocase 49.1 31 0.001 36.3 6.9 75 329-409 112-200 (853)
465 2pze_A Cystic fibrosis transme 49.0 8.4 0.00029 33.6 2.4 18 68-85 33-50 (229)
466 2ff7_A Alpha-hemolysin translo 48.9 8.4 0.00029 34.1 2.4 18 68-85 34-51 (247)
467 3gfo_A Cobalt import ATP-bindi 48.8 8.2 0.00028 34.8 2.3 18 68-85 33-50 (275)
468 3cob_A Kinesin heavy chain-lik 48.5 6.8 0.00023 37.0 1.8 19 68-86 77-97 (369)
469 1vht_A Dephospho-COA kinase; s 48.5 7.8 0.00027 33.3 2.1 18 70-87 5-22 (218)
470 3auy_A DNA double-strand break 48.4 6.9 0.00023 37.1 1.9 17 70-86 26-42 (371)
471 3eme_A Rhodanese-like domain p 47.8 18 0.0006 26.6 3.8 36 332-370 56-91 (103)
472 1tf5_A Preprotein translocase 47.8 38 0.0013 35.7 7.3 76 328-409 120-209 (844)
473 2ixe_A Antigen peptide transpo 47.7 17 0.00057 32.7 4.3 19 67-85 43-61 (271)
474 1b0u_A Histidine permease; ABC 47.6 8.3 0.00028 34.5 2.2 19 67-85 30-48 (262)
475 3qks_A DNA double-strand break 47.5 12 0.0004 32.0 3.0 17 70-86 24-40 (203)
476 4a2w_A RIG-I, retinoic acid in 47.3 36 0.0012 36.8 7.5 101 79-206 611-721 (936)
477 1mv5_A LMRA, multidrug resista 47.3 7.1 0.00024 34.5 1.7 19 67-85 26-44 (243)
478 4g1u_C Hemin import ATP-bindin 47.3 9 0.00031 34.4 2.4 19 67-85 35-53 (266)
479 2obl_A ESCN; ATPase, hydrolase 47.2 13 0.00045 34.8 3.5 39 46-85 49-87 (347)
480 1vpl_A ABC transporter, ATP-bi 47.1 8.5 0.00029 34.3 2.2 19 67-85 39-57 (256)
481 3gk5_A Uncharacterized rhodane 47.1 17 0.00059 27.0 3.7 36 332-370 55-90 (108)
482 1r6b_X CLPA protein; AAA+, N-t 47.1 9.9 0.00034 40.1 3.0 21 68-88 206-226 (758)
483 1pzn_A RAD51, DNA repair and r 47.1 13 0.00045 34.8 3.6 24 27-50 35-58 (349)
484 1rz3_A Hypothetical protein rb 47.1 10 0.00034 32.2 2.6 18 69-86 22-39 (201)
485 2v6i_A RNA helicase; membrane, 47.1 32 0.0011 33.2 6.5 34 101-138 171-204 (431)
486 2grj_A Dephospho-COA kinase; T 47.1 11 0.00039 31.7 2.9 39 71-119 14-52 (192)
487 1odf_A YGR205W, hypothetical 3 47.0 11 0.00037 34.4 2.9 17 70-86 32-48 (290)
488 1ji0_A ABC transporter; ATP bi 46.9 9.4 0.00032 33.6 2.4 18 68-85 31-48 (240)
489 1g6h_A High-affinity branched- 46.9 9.4 0.00032 34.0 2.4 18 68-85 32-49 (257)
490 2zu0_C Probable ATP-dependent 46.5 11 0.00038 33.7 2.9 19 67-85 44-62 (267)
491 3oaa_A ATP synthase subunit al 46.4 1.3E+02 0.0046 29.4 10.5 70 49-124 143-215 (513)
492 2pcj_A ABC transporter, lipopr 46.3 8.7 0.0003 33.4 2.1 18 68-85 29-46 (224)
493 2yz2_A Putative ABC transporte 46.3 9 0.00031 34.3 2.2 19 67-85 31-49 (266)
494 1wv9_A Rhodanese homolog TT165 46.2 21 0.00073 25.6 4.0 35 333-370 54-88 (94)
495 2olj_A Amino acid ABC transpor 46.1 9 0.00031 34.3 2.2 19 67-85 48-66 (263)
496 4akg_A Glutathione S-transfera 46.0 20 0.00069 43.3 5.5 19 68-86 1266-1284(2695)
497 3iwh_A Rhodanese-like domain p 45.8 20 0.00069 26.5 3.8 36 332-370 56-91 (103)
498 2jeo_A Uridine-cytidine kinase 45.7 11 0.00038 33.1 2.7 20 68-87 24-43 (245)
499 2qi9_C Vitamin B12 import ATP- 45.3 10 0.00035 33.6 2.4 18 68-85 25-42 (249)
500 2yhs_A FTSY, cell division pro 45.2 22 0.00074 35.0 4.8 35 69-107 293-327 (503)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=3.1e-59 Score=468.30 Aligned_cols=364 Identities=25% Similarity=0.411 Sum_probs=308.8
Q ss_pred CccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc
Q 010196 18 PVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR 97 (515)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~ 97 (515)
|.++.+|+++ +|++.++++|.++||.+|+|+|.++|+.++. |+|++++||||||||++|++|+++.+...
T Consensus 52 p~~~~~f~~~------~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~----g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 52 PQPIQHFTSA------DLRDIIIDNVNKSGYKIPTPIQKCSIPVISS----GRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp CCCCCCGGGS------CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred CCCcCChhhc------CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 3445556555 3999999999999999999999999998764 89999999999999999999999998764
Q ss_pred c----cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCC
Q 010196 98 A----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (515)
Q Consensus 98 ~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (515)
. ..++++||++||++|+.|+++++++++...++++..++|+.+...+.. .+..++
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~---------------------~l~~~~ 180 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNE---------------------CITRGC 180 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHH---------------------HHTTCC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHH---------------------HhhcCC
Confidence 3 236789999999999999999999999888899999999988766543 234678
Q ss_pred cEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhcc
Q 010196 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRC 253 (515)
Q Consensus 174 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (515)
+|+|+||++|.+++.+ ..+.+.++++||+||||+|++++|...+..++......
T Consensus 181 ~Ivv~Tp~~l~~~l~~-~~~~l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~------------------------- 234 (434)
T 2db3_A 181 HVVIATPGRLLDFVDR-TFITFEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMR------------------------- 234 (434)
T ss_dssp SEEEECHHHHHHHHHT-TSCCCTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSC-------------------------
T ss_pred CEEEEChHHHHHHHHh-CCcccccCCeEEEccHhhhhccCcHHHHHHHHHhcCCC-------------------------
Confidence 9999999999999887 44668899999999999999999998888888764211
Q ss_pred ccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCC
Q 010196 254 GVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEE 333 (515)
Q Consensus 254 ~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~ 333 (515)
+..+++++|||++.....+....+.++..+....... ....+.+....+....+...+..++.....
T Consensus 235 -----------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~-~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~- 301 (434)
T 2db3_A 235 -----------PEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGG-ACSDVKQTIYEVNKYAKRSKLIEILSEQAD- 301 (434)
T ss_dssp -----------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTC-CCTTEEEEEEECCGGGHHHHHHHHHHHCCT-
T ss_pred -----------CCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccc-cccccceEEEEeCcHHHHHHHHHHHHhCCC-
Confidence 2348899999999888888888888888777654332 233455666666777888888888887654
Q ss_pred eEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC
Q 010196 334 KCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP 413 (515)
Q Consensus 334 ~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p 413 (515)
++||||++++.++.+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||+||+|
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~~---~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p 378 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEKE---FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMP 378 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHTT---CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCC
T ss_pred CEEEEEeCcHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCC
Confidence 49999999999999999999866 889999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhHHhhhhcccCCCCccEEEEeech-hHHHHHHHHHHh
Q 010196 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKA 454 (515)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~~~~~~ 454 (515)
.+..+|+||+||+||.|+.|.+++|+++. +......+.+.+
T Consensus 379 ~~~~~y~qriGR~gR~g~~G~a~~~~~~~~~~~~~~~l~~~l 420 (434)
T 2db3_A 379 SKIDDYVHRIGRTGRVGNNGRATSFFDPEKDRAIAADLVKIL 420 (434)
T ss_dssp SSHHHHHHHHTTSSCTTCCEEEEEEECTTTCGGGHHHHHHHH
T ss_pred CCHHHHHHHhcccccCCCCCEEEEEEeccccHHHHHHHHHHH
Confidence 99999999999999999999999999854 444444444443
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.1e-56 Score=445.91 Aligned_cols=370 Identities=28% Similarity=0.426 Sum_probs=308.7
Q ss_pred CCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
.|.+..+|+++. +++.+.++|..+||.+|+|+|.++++.++. ++|+++.||||+|||++|++|+++.+..
T Consensus 10 ~p~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~~l~~~~~ 79 (417)
T 2i4i_A 10 CPPHIESFSDVE------MGEIIMGNIELTRYTRPTPVQKHAIPIIKE----KRDLMACAQTGSGKTAAFLLPILSQIYS 79 (417)
T ss_dssp CCCCCSSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcccCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 355566777775 999999999999999999999999998764 8999999999999999999999988865
Q ss_pred ccc-----------------CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCccccccc
Q 010196 97 RAV-----------------RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (515)
Q Consensus 97 ~~~-----------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (515)
... .++++||++||++|+.|+++.+++++...++++..++|+.........
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~------------ 147 (417)
T 2i4i_A 80 DGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRD------------ 147 (417)
T ss_dssp HCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHH------------
T ss_pred ccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHH------------
Confidence 321 235799999999999999999999988888999999999887665433
Q ss_pred CCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCcccc
Q 010196 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTF 239 (515)
Q Consensus 160 ~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 239 (515)
+..+++|+|+||++|.+++.. ..+.+.++++||+||||++.+.+|...+..++.......
T Consensus 148 ---------~~~~~~I~v~Tp~~l~~~l~~-~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~---------- 207 (417)
T 2i4i_A 148 ---------LERGCHLLVATPGRLVDMMER-GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPP---------- 207 (417)
T ss_dssp ---------HTTCCSEEEECHHHHHHHHHT-TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCC----------
T ss_pred ---------hhCCCCEEEEChHHHHHHHHc-CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCC----------
Confidence 345679999999999999877 446678899999999999999888888877776422110
Q ss_pred ccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCc
Q 010196 240 LPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLK 319 (515)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 319 (515)
....+++++|||++.....+....+.++..+...... .....+.+.........+
T Consensus 208 ------------------------~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~ 262 (417)
T 2i4i_A 208 ------------------------KGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSENITQKVVWVEESDK 262 (417)
T ss_dssp ------------------------BTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGH
T ss_pred ------------------------cCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCccCceEEEEEeccHhH
Confidence 0124789999999877777777777777666554332 223345555566667778
Q ss_pred HHHHHHHHHhc-CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcccc
Q 010196 320 PLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (515)
Q Consensus 320 ~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~G 398 (515)
...+..++... .++++||||++++.++.+++.|...+ +.+..+||++++.+|.++++.|++|+.+|||||+++++|
T Consensus 263 ~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~G 339 (417)
T 2i4i_A 263 RSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARG 339 (417)
T ss_dssp HHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTT
T ss_pred HHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCC---CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 88888888876 56799999999999999999998865 889999999999999999999999999999999999999
Q ss_pred CCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 399 MDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 399 iDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
+|+|++++||++++|.+...|+||+||+||.|+.|.|++|+++.|...+.++.+.+..
T Consensus 340 idip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~ 397 (417)
T 2i4i_A 340 LDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLVE 397 (417)
T ss_dssp SCCCCEEEEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECGGGGGGHHHHHHHHHH
T ss_pred CCcccCCEEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEccccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998888888776643
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=9.7e-56 Score=442.04 Aligned_cols=354 Identities=25% Similarity=0.435 Sum_probs=304.2
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.+.++|..+||..|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ..+.++||++||++|
T Consensus 43 ~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~Pt~~L 117 (410)
T 2j0s_A 43 GLREDLLRGIYAYGFEKPSAIQQRAIKQIIK----GRDVIAQSQSGTGKTATFSISVLQCLDIQ-VRETQALILAPTREL 117 (410)
T ss_dssp CCCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHTCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCCchHHHHHHHHHHHhhc-cCCceEEEEcCcHHH
Confidence 3999999999999999999999999998865 89999999999999999999999887543 345689999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|+++.+++++...++.+..+.|+......... +..+++|+|+||++|.+++.. ..+
T Consensus 118 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~ivv~Tp~~l~~~l~~-~~~ 175 (410)
T 2j0s_A 118 AVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRK---------------------LDYGQHVVAGTPGRVFDMIRR-RSL 175 (410)
T ss_dssp HHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHH---------------------HHHCCSEEEECHHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHH---------------------hhcCCCEEEcCHHHHHHHHHh-CCc
Confidence 9999999999998888999999999887665433 335679999999999999887 456
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||||++.+.++...+..++..++ +..+++++|
T Consensus 176 ~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~S 217 (410)
T 2j0s_A 176 RTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLP--------------------------------------PATQVVLIS 217 (410)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEE
T ss_pred cHhheeEEEEccHHHHHhhhhHHHHHHHHHhCc--------------------------------------cCceEEEEE
Confidence 678899999999999998888877777765543 223789999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCC-CcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESK-LKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (515)
||++.....+....+.+|..+......... ..+.+........ .+...+..++.....+++||||++++.++.+++.|
T Consensus 218 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L 296 (410)
T 2j0s_A 218 ATLPHEILEMTNKFMTDPIRILVKRDELTL-EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKM 296 (410)
T ss_dssp SCCCHHHHTTGGGTCSSCEEECCCGGGCSC-TTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCEEEEecCccccC-CCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHH
Confidence 999887777777777788776654433222 3344444444443 47888888888888889999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.
T Consensus 297 ~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 373 (410)
T 2j0s_A 297 REAN---FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRK 373 (410)
T ss_dssp HHTT---CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCC
T ss_pred HhCC---CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCc
Confidence 8866 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeechhHHHHHHHHHHhcC
Q 010196 433 GRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 433 g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
|.|++|+++.|...++++.+.+..
T Consensus 374 g~~~~~~~~~~~~~~~~i~~~~~~ 397 (410)
T 2j0s_A 374 GVAINFVKNDDIRILRDIEQYYST 397 (410)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHTTC
T ss_pred eEEEEEecHHHHHHHHHHHHHhCC
Confidence 999999999999999998877654
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=2.3e-54 Score=430.68 Aligned_cols=359 Identities=27% Similarity=0.478 Sum_probs=305.7
Q ss_pred CCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE
Q 010196 28 PLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (515)
Q Consensus 28 ~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil 107 (515)
+|+++ ++++.+.++|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+.+++|+
T Consensus 22 ~f~~~-~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~li~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil 95 (400)
T 1s2m_A 22 TFEDF-YLKRELLMGIFEAGFEKPSPIQEEAIPVAIT----GRDILARAKNGTGKTAAFVIPTLEKVKPK-LNKIQALIM 95 (400)
T ss_dssp CGGGG-CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCTTSCHHHHHHHHHHHHCCTT-SCSCCEEEE
T ss_pred Chhhc-CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCCEEEECCCCcHHHHHHHHHHHHHHhhc-cCCccEEEE
Confidence 34444 3999999999999999999999999988764 78999999999999999999999887653 245589999
Q ss_pred cccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHH
Q 010196 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (515)
Q Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 187 (515)
+|+++|+.|+++.+++++...++++....|+......... +...++|+|+||++|.+++
T Consensus 96 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Ivv~T~~~l~~~~ 154 (400)
T 1s2m_A 96 VPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR---------------------LNETVHILVGTPGRVLDLA 154 (400)
T ss_dssp CSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHH---------------------hcCCCCEEEEchHHHHHHH
Confidence 9999999999999999998888999999998876654332 3356799999999999988
Q ss_pred hcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCce
Q 010196 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
.. ....+.++++||+||||++.+.++...+..++..+. +..
T Consensus 155 ~~-~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~--------------------------------------~~~ 195 (400)
T 1s2m_A 155 SR-KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLP--------------------------------------PTH 195 (400)
T ss_dssp HT-TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTSC--------------------------------------SSC
T ss_pred Hh-CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------cCc
Confidence 76 345678899999999999998888888877776543 223
Q ss_pred eeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHH
Q 010196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (515)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (515)
+.+++|||++..........+..|..+..... .....+..+........+...+..++.....+++||||++++.++.
T Consensus 196 ~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~ 273 (400)
T 1s2m_A 196 QSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVEL 273 (400)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHH
T ss_pred eEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHH
Confidence 78999999987777766666666665543322 1223345556666667788888888888888899999999999999
Q ss_pred HHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcc
Q 010196 348 LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (515)
Q Consensus 348 l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (515)
+++.|...+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+|
T Consensus 274 l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~g 350 (400)
T 1s2m_A 274 LAKKITDLG---YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSG 350 (400)
T ss_dssp HHHHHHHHT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSS
T ss_pred HHHHHHhcC---CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhc
Confidence 999999876 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccEEEEeechhHHHHHHHHHHhcCC
Q 010196 428 RAGQLGRCFTLLHKDEVKRFKKLLQKADND 457 (515)
Q Consensus 428 R~g~~g~~~~~~~~~d~~~~~~~~~~~~~~ 457 (515)
|.|+.|.|++++++.|...+.++.+.....
T Consensus 351 R~g~~g~~~~l~~~~~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 351 RFGHLGLAINLINWNDRFNLYKIEQELGTE 380 (400)
T ss_dssp CTTCCEEEEEEECGGGHHHHHHHHHHHTCC
T ss_pred CCCCCceEEEEeccchHHHHHHHHHHhCCC
Confidence 999999999999999999999998877543
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.9e-54 Score=433.53 Aligned_cols=355 Identities=24% Similarity=0.414 Sum_probs=290.7
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.+.+.|.++||..|+++|.++++.++. ++++++.+|||+|||++|++|+++.+... ..+.+++|++|+++|
T Consensus 46 ~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~P~~~L 120 (414)
T 3eiq_A 46 NLSESLLRGIYAYGFEKPSAIQQRAILPCIK----GYDVIAQAQSGTGKTATFAISILQQIELD-LKATQALVLAPTREL 120 (414)
T ss_dssp CCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEECCCSCSSSHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHhHHHhC----CCCEEEECCCCCcccHHHHHHHHHHHhhc-CCceeEEEEeChHHH
Confidence 3999999999999999999999999988865 88999999999999999999999888654 245689999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|+.+.+++++...+..+....|+.........+ ...+++|+|+||++|.+.+.. ..+
T Consensus 121 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~iiv~T~~~l~~~l~~-~~~ 179 (414)
T 3eiq_A 121 AQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKL--------------------QMEAPHIIVGTPGRVFDMLNR-RYL 179 (414)
T ss_dssp HHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHH--------------------TTTCCSEEEECHHHHHHHHHH-TSS
T ss_pred HHHHHHHHHHHhcccCceEEEEECCcchHHHHHHH--------------------hcCCCCEEEECHHHHHHHHHc-CCc
Confidence 99999999999988889999999988766654332 125679999999999999877 446
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||||++.+.++...+..++..+. +..+++++|
T Consensus 180 ~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~S 221 (414)
T 3eiq_A 180 SPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLN--------------------------------------SNTQVVLLS 221 (414)
T ss_dssp CSTTCCEEEECSHHHHHHTTTHHHHHHHHTTSC--------------------------------------TTCEEEEEC
T ss_pred ccccCcEEEEECHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCeEEEEE
Confidence 678899999999999998888877777776543 223789999
Q ss_pred EEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec-cCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (515)
||++..........+.++..+.......... .+.+..... ....+...+..++.....+++||||++++.++.+++.|
T Consensus 222 AT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l 300 (414)
T 3eiq_A 222 ATMPSDVLEVTKKFMRDPIRILVKKEELTLE-GIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKM 300 (414)
T ss_dssp SCCCHHHHHHHTTTCSSCEEECCCCCCCCTT-SCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHcCCCEEEEecCCccCCC-CceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHH
Confidence 9998887777777788887776654443333 334444443 44558888999998888899999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
...+ +.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|+.
T Consensus 301 ~~~~---~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~ 377 (414)
T 3eiq_A 301 HARD---FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRK 377 (414)
T ss_dssp HTTT---CCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC------
T ss_pred HhcC---CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCC
Confidence 8765 8899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeechhHHHHHHHHHHhcC
Q 010196 433 GRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 433 g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
|.|++++++.|...++++.+.++.
T Consensus 378 g~~~~~~~~~~~~~~~~~~~~~~~ 401 (414)
T 3eiq_A 378 GVAINMVTEEDKRTLRDIETFYNT 401 (414)
T ss_dssp -CEEEEECSTHHHHHHHHHHHTTC
T ss_pred ceEEEEEcHHHHHHHHHHHHHHcC
Confidence 999999999999999988777654
No 6
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.8e-53 Score=423.10 Aligned_cols=354 Identities=24% Similarity=0.359 Sum_probs=298.5
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.++|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+.++||++|+++|+
T Consensus 15 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~ 89 (391)
T 1xti_A 15 LKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTRELA 89 (391)
T ss_dssp CCHHHHHHHHHHSCCSCCHHHHHHHHHHTT----TCCEEEECSSCSSHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhc----CCcEEEECCCCCcHHHHHHHHHHHhhccc-CCCeeEEEECCCHHHH
Confidence 999999999999999999999999988764 89999999999999999999999887653 2455899999999999
Q ss_pred HHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
.|+.+.++++.... ++++..++|+.+.......+. ...++|+|+||++|..++.. ..+
T Consensus 90 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--------------------~~~~~iiv~T~~~l~~~~~~-~~~ 148 (391)
T 1xti_A 90 FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTPGRILALARN-KSL 148 (391)
T ss_dssp HHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHT-TSS
T ss_pred HHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHh--------------------cCCCCEEEECHHHHHHHHHc-CCc
Confidence 99999999998766 788999999987665543221 23469999999999998876 445
Q ss_pred CCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
.+.++++||+||||++.+ .++...+..++...+ +..+++++
T Consensus 149 ~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~ 190 (391)
T 1xti_A 149 NLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------------HEKQVMMF 190 (391)
T ss_dssp CCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSC--------------------------------------SSSEEEEE
T ss_pred cccccCEEEEeCHHHHhhccchHHHHHHHHhhCC--------------------------------------CCceEEEE
Confidence 678999999999999877 466666666665432 12378999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (515)
|||++..........+..|..+............+..+........+...+..++.....+++||||++++.++.+++.|
T Consensus 191 SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L 270 (391)
T 1xti_A 191 SATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLL 270 (391)
T ss_dssp ESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHH
T ss_pred EeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHH
Confidence 99999888887777777787766554433334455666666777788888999998888899999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL 432 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~ 432 (515)
...+ +.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|++...|+||+||+||.|+.
T Consensus 271 ~~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~ 347 (391)
T 1xti_A 271 VEQN---FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 347 (391)
T ss_dssp HHTT---CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCC
T ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCc
Confidence 8865 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEeechhH-HHHHHHHHHhc
Q 010196 433 GRCFTLLHKDEV-KRFKKLLQKAD 455 (515)
Q Consensus 433 g~~~~~~~~~d~-~~~~~~~~~~~ 455 (515)
|.|++++++.+. ..+..+.+.+.
T Consensus 348 g~~~~~~~~~~~~~~~~~~~~~~~ 371 (391)
T 1xti_A 348 GLAITFVSDENDAKILNDVQDRFE 371 (391)
T ss_dssp CEEEEEECSHHHHHHHHHHHHHTT
T ss_pred eEEEEEEcccchHHHHHHHHHHhc
Confidence 999999987754 44566655543
No 7
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=8.5e-54 Score=426.08 Aligned_cols=377 Identities=22% Similarity=0.337 Sum_probs=299.1
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCc
Q 010196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~ 101 (515)
++|+++. +++.+.++|.++||..|+|+|.++++.++.. .+++++++||||+|||++|++|++..+... ..+
T Consensus 5 ~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~--~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-~~~ 75 (395)
T 3pey_A 5 KSFDELG------LAPELLKGIYAMKFQKPSKIQERALPLLLHN--PPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-DAS 75 (395)
T ss_dssp CSSTTSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHCS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-CCS
T ss_pred cCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCcHHHHHHHHHHHHhccC-CCC
Confidence 4566664 9999999999999999999999999998762 248999999999999999999999887654 245
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCCh
Q 010196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (515)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~ 181 (515)
.++||++|+++|+.|+++.+++++...++.+....++..... ...+++|+|+||+
T Consensus 76 ~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~iiv~T~~ 130 (395)
T 3pey_A 76 PQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN-------------------------KQINAQVIVGTPG 130 (395)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT-------------------------SCBCCSEEEECHH
T ss_pred ccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh-------------------------ccCCCCEEEEcHH
Confidence 689999999999999999999998877888888777653211 1235799999999
Q ss_pred HHHHHHhcCcCCCCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCC
Q 010196 182 RLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (515)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (515)
+|.+.+.. ....+.++++||+||||++.+ .++...+..+....+
T Consensus 131 ~l~~~~~~-~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~---------------------------------- 175 (395)
T 3pey_A 131 TVLDLMRR-KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLP---------------------------------- 175 (395)
T ss_dssp HHHHHHHT-TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSC----------------------------------
T ss_pred HHHHHHHc-CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCC----------------------------------
Confidence 99998876 445688899999999999887 566666665555443
Q ss_pred CCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec-cCCCcHHHHHHHHHhcCCCeEEEEc
Q 010196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFT 339 (515)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf~ 339 (515)
+..+++++|||++..........+..+..+.......... .+....... ....+...+..++.....+++||||
T Consensus 176 ----~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~ 250 (395)
T 3pey_A 176 ----KDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVD-AIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFV 250 (395)
T ss_dssp ----TTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCT-TEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEEC
T ss_pred ----CCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccc-cccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEe
Confidence 2237899999998777777777777776665544333332 233333333 3445667777777777789999999
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-----
Q 010196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA----- 414 (515)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~----- 414 (515)
+++..++.+++.|+..+ ..+..+||++++.+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 251 ~~~~~~~~l~~~l~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~ 327 (395)
T 3pey_A 251 ATKKTANVLYGKLKSEG---HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQ 327 (395)
T ss_dssp SCHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSS
T ss_pred CCHHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCC
Confidence 99999999999999866 7899999999999999999999999999999999999999999999999999998
Q ss_pred -ChhhhHHhhhhcccCCCCccEEEEeechhHH-HHHHHHHHhcCCCCCccCCChhhHhhhHHHHH
Q 010196 415 -YIKTYIHRAGRTARAGQLGRCFTLLHKDEVK-RFKKLLQKADNDSCPIHSIPSSLIESLRPVYK 477 (515)
Q Consensus 415 -s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (515)
+..+|+||+||+||.|+.|.+++|+++.+.. .+..+.+.... .....++....+.+.+.++
T Consensus 328 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~ 390 (395)
T 3pey_A 328 ADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSAIQKYFGD--IEMTRVPTDDWDEVEKIVK 390 (395)
T ss_dssp BCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHTTS--CCCEECCSSCHHHHHHHHH
T ss_pred CCHHHhhHhccccccCCCCceEEEEEechHHHHHHHHHHHHhCC--ceeecCChHHHHHHHHHHH
Confidence 9999999999999999999999999876544 44455444331 2334455444444444443
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.9e-54 Score=429.69 Aligned_cols=361 Identities=24% Similarity=0.376 Sum_probs=295.2
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccC
Q 010196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~ 100 (515)
..+|+++. +++.+.++|.++||..|+|+|.++++.++.. .++++++.||||+|||++|++|+++.+... ..
T Consensus 24 ~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~--~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~ 94 (412)
T 3fht_A 24 VKSFEELR------LKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NK 94 (412)
T ss_dssp SSCTGGGT------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHSS--SCCCEEEECCTTSCHHHHHHHHHHHHCCTT-SC
T ss_pred cCCHhhCC------CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCCeEEEECCCCchHHHHHHHHHHHHhhhc-CC
Confidence 34555553 9999999999999999999999999998752 358999999999999999999999988764 34
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
++++||++||++|+.|+++.++++.... +..+....++...... ....++|+|+|
T Consensus 95 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~ivv~T 150 (412)
T 3fht_A 95 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGT 150 (412)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT------------------------CCCCCSEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh------------------------hcCCCCEEEEC
Confidence 5689999999999999999999987654 5777777776543211 12457999999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
|++|.+++.+...+.+.++++||+||||++.+ .++...+..+.....
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~-------------------------------- 198 (412)
T 3fht_A 151 PGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP-------------------------------- 198 (412)
T ss_dssp HHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSC--------------------------------
T ss_pred chHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCC--------------------------------
Confidence 99999999775666788999999999999876 556566665555443
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec-cCCCcHHHHHHHHHhcCCCeEEE
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIV 337 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lV 337 (515)
+..+++++|||++..........+.++..+......... ..+.+..... ....+...+..++.....+++||
T Consensus 199 ------~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lv 271 (412)
T 3fht_A 199 ------RNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMI 271 (412)
T ss_dssp ------TTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSC-TTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEE
T ss_pred ------CCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccc-cCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEE
Confidence 223889999999887777777777778777665444333 3333443333 33567778888888888899999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC---
Q 010196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA--- 414 (515)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~--- 414 (515)
||+++..++.+++.|...+ ..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.
T Consensus 272 f~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~ 348 (412)
T 3fht_A 272 FCHTRKTASWLAAELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKD 348 (412)
T ss_dssp ECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSS
T ss_pred EeCCHHHHHHHHHHHHhCC---CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCC
Confidence 9999999999999999865 7899999999999999999999999999999999999999999999999999994
Q ss_pred ---ChhhhHHhhhhcccCCCCccEEEEeechh-HHHHHHHHHHhcC
Q 010196 415 ---YIKTYIHRAGRTARAGQLGRCFTLLHKDE-VKRFKKLLQKADN 456 (515)
Q Consensus 415 ---s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d-~~~~~~~~~~~~~ 456 (515)
+..+|+||+||+||.|+.|.|++++++.+ ...+..+.+....
T Consensus 349 ~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~ 394 (412)
T 3fht_A 349 GNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNK 394 (412)
T ss_dssp SSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHHHHHHHTC
T ss_pred CCcchheeecccCcccCCCCCceEEEEEcChhhHHHHHHHHHHHCC
Confidence 56899999999999999999999998765 6667777666543
No 9
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.4e-53 Score=443.29 Aligned_cols=368 Identities=28% Similarity=0.414 Sum_probs=294.4
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---cCcccEEEEcccH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA---VRCLRALVVLPTR 111 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~---~~~~~~lil~Pt~ 111 (515)
|+++++++|..+||..|+|+|.++++.++.. .++++++.||||+|||++|++|+++.+.... ..++++||++||+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~--~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr 105 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSS--EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTR 105 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCS--SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHcc--CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchH
Confidence 9999999999999999999999999988731 4789999999999999999999999987753 2346899999999
Q ss_pred HHHHHHHHHHHHhccc----cCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHH
Q 010196 112 DLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (515)
Q Consensus 112 ~L~~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 187 (515)
+|+.|+++.+++++.. ....+..++|+.........+. ..+++|+|+||++|.+++
T Consensus 106 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~--------------------~~~~~IlV~Tp~~l~~~l 165 (579)
T 3sqw_A 106 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMN--------------------KLRPNIVIATPGRLIDVL 165 (579)
T ss_dssp HHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHH--------------------HHCCSEEEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHh--------------------cCCCCEEEECHHHHHHHH
Confidence 9999999999988632 2466788888887666544321 246799999999999988
Q ss_pred hcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCce
Q 010196 188 NATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRL 267 (515)
Q Consensus 188 ~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (515)
.......+..+++||+||||++++++|...+..++..+...... ..+..
T Consensus 166 ~~~~~~~~~~~~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~-------------------------------~~~~~ 214 (579)
T 3sqw_A 166 EKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADNI 214 (579)
T ss_dssp HHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTCC
T ss_pred HhccccccccCCEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcc-------------------------------cccCc
Confidence 76433456789999999999999999998888888776432110 01234
Q ss_pred eeEEEEEEecCCchhhhhcccCCCeeEeeCCc---cccCCcccceeEEeccCC-CcH----HHHHHHHHh-cCCCeEEEE
Q 010196 268 VKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESK-LKP----LYLVALLQS-LGEEKCIVF 338 (515)
Q Consensus 268 ~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~k~----~~l~~~l~~-~~~~~~lVf 338 (515)
+++++|||++..+..+....+..+..+..... .......+.+........ .+. ..+...+.. ..+.++|||
T Consensus 215 ~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF 294 (579)
T 3sqw_A 215 KTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIF 294 (579)
T ss_dssp EEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 88999999998888888877777665543221 112222333333333322 222 222333332 457799999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhh
Q 010196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKT 418 (515)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~ 418 (515)
|+++..++.+++.|......++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++..
T Consensus 295 ~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~ 374 (579)
T 3sqw_A 295 APTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELAN 374 (579)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTH
T ss_pred CCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHH
Confidence 99999999999999876434588999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 419 YIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
|+||+||+||.|+.|.|++|+.+.|...++.+.+...
T Consensus 375 y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 411 (579)
T 3sqw_A 375 YIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 411 (579)
T ss_dssp HHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred hhhhccccccCCCCceEEEEEcccHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998877653
No 10
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=7.8e-53 Score=437.70 Aligned_cols=369 Identities=28% Similarity=0.417 Sum_probs=293.6
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc---CcccEEEEccc
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPT 110 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~---~~~~~lil~Pt 110 (515)
.|++.+.+++..+||..|+|+|.++++.++. ..++|++++||||+|||++|++|+++.+..... .++++||++||
T Consensus 78 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~--~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Pt 155 (563)
T 3i5x_A 78 VLDKEIHKAITRMEFPGLTPVQQKTIKPILS--SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPT 155 (563)
T ss_dssp SSCHHHHHHHHTTCCSSCCHHHHHHHHHHHS--SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSS
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhc--CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCc
Confidence 3899999999999999999999999998873 137899999999999999999999999877542 24589999999
Q ss_pred HHHHHHHHHHHHHhccc----cCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHH
Q 010196 111 RDLALQVKDVFAAIAPA----VGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDH 186 (515)
Q Consensus 111 ~~L~~q~~~~~~~~~~~----~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~ 186 (515)
++|+.|+++.++++... ....+..++|+.........+ ...+++|+|+||++|.++
T Consensus 156 r~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--------------------~~~~~~Iiv~Tp~~l~~~ 215 (563)
T 3i5x_A 156 RDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKM--------------------NKLRPNIVIATPGRLIDV 215 (563)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHH--------------------HHHCCSEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHH--------------------hcCCCCEEEECcHHHHHH
Confidence 99999999999987532 135678888888766554332 134679999999999998
Q ss_pred HhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCc
Q 010196 187 INATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (515)
Q Consensus 187 l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
+.+.....+..+++||+||||++++++|...+..++..+...... ..+.
T Consensus 216 l~~~~~~~~~~~~~lViDEah~l~~~~f~~~~~~i~~~l~~~~~~-------------------------------~~~~ 264 (563)
T 3i5x_A 216 LEKYSNKFFRFVDYKVLDEADRLLEIGFRDDLETISGILNEKNSK-------------------------------SADN 264 (563)
T ss_dssp HHHHHHHHCTTCCEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSS-------------------------------CTTC
T ss_pred HHhccccccccceEEEEeCHHHHhccchHHHHHHHHHhhhhcccc-------------------------------CccC
Confidence 876433346789999999999999999998888888776432110 0133
Q ss_pred eeeEEEEEEecCCchhhhhcccCCCeeEeeCCc---cccCCcccceeEEeccCC-CcHH----HHHHHHHh-cCCCeEEE
Q 010196 267 LVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET---RYKLPERLESYKLICESK-LKPL----YLVALLQS-LGEEKCIV 337 (515)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~k~~----~l~~~l~~-~~~~~~lV 337 (515)
.+++++|||++..+..+....+..+..+..... .......+.+........ .+.. .+...+.. ..+.++||
T Consensus 265 ~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iV 344 (563)
T 3i5x_A 265 IKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAII 344 (563)
T ss_dssp CEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEE
Confidence 589999999998888888877777655543221 112222333333333322 2222 22222332 45779999
Q ss_pred EcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChh
Q 010196 338 FTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIK 417 (515)
Q Consensus 338 f~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~ 417 (515)
||+++..++.+++.|......++.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.++.
T Consensus 345 F~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~ 424 (563)
T 3i5x_A 345 FAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQIGVPSELA 424 (563)
T ss_dssp ECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEEESCCSSTT
T ss_pred EcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEEECCCCchh
Confidence 99999999999999987643458899999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 418 TYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 418 ~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.|+||+||+||.|+.|.|++|+.+.|...++.+.+...
T Consensus 425 ~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 425 NYIHRIGRTARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp HHHHHHTTSSCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred hhhhhcCccccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998877654
No 11
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-52 Score=411.71 Aligned_cols=347 Identities=28% Similarity=0.468 Sum_probs=293.9
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.++|+++||.+|+|+|.++++.++. .++++++.+|||+|||++|++|++..+... .+.+++|++|+++|+
T Consensus 13 l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~---~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~--~~~~~lil~P~~~L~ 87 (367)
T 1hv8_A 13 LSDNILNAIRNKGFEKPTDIQMKVIPLFLN---DEYNIVAQARTGSGKTASFAIPLIELVNEN--NGIEAIILTPTRELA 87 (367)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH---TCSEEEEECCSSSSHHHHHHHHHHHHSCSS--SSCCEEEECSCHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC---CCCCEEEECCCCChHHHHHHHHHHHHhccc--CCCcEEEEcCCHHHH
Confidence 999999999999999999999999998764 237999999999999999999999887653 456899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+.+.++++....++.+...+|+.........+ ..++|+|+||++|.+.+.. ....
T Consensus 88 ~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----------------------~~~~iiv~T~~~l~~~~~~-~~~~ 144 (367)
T 1hv8_A 88 IQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL----------------------KNANIVVGTPGRILDHINR-GTLN 144 (367)
T ss_dssp HHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHH----------------------HTCSEEEECHHHHHHHHHT-TCSC
T ss_pred HHHHHHHHHHhCCCCceEEEEECCcchHHHHhhc----------------------CCCCEEEecHHHHHHHHHc-CCcc
Confidence 9999999999887788999999988766543322 2569999999999998876 4456
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++||+||||++.+.++...+..++.... +..+++++||
T Consensus 145 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SA 186 (367)
T 1hv8_A 145 LKNVKYFILDEADEMLNMGFIKDVEKILNACN--------------------------------------KDKRILLFSA 186 (367)
T ss_dssp TTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC--------------------------------------SSCEEEEECS
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCC--------------------------------------CCceEEEEee
Confidence 78899999999999988887777776665542 2237899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhh
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (515)
|++..........+.++..+.... ...+...........+...+..++. ..+.++||||++++.++.+++.|..
T Consensus 187 T~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~ 260 (367)
T 1hv8_A 187 TMPREILNLAKKYMGDYSFIKAKI-----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRD 260 (367)
T ss_dssp SCCHHHHHHHHHHCCSEEEEECCS-----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHcCCCeEEEecC-----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHh
Confidence 998766666555555554443322 2244555566667778888888776 4567899999999999999999998
Q ss_pred cCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCcc
Q 010196 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (515)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 434 (515)
.+ ..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.++.+|+||+||+||.|++|.
T Consensus 261 ~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~ 337 (367)
T 1hv8_A 261 IG---FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK 337 (367)
T ss_dssp TT---CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCE
T ss_pred cC---CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccE
Confidence 65 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeechhHHHHHHHHHHhcC
Q 010196 435 CFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 435 ~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
+++++++.|...+..+.+..+.
T Consensus 338 ~~~~~~~~~~~~~~~i~~~~~~ 359 (367)
T 1hv8_A 338 AISIINRREYKKLRYIERAMKL 359 (367)
T ss_dssp EEEEECTTSHHHHHHHHHHHTC
T ss_pred EEEEEcHHHHHHHHHHHHHhCC
Confidence 9999999999999998887654
No 12
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.4e-54 Score=440.00 Aligned_cols=352 Identities=23% Similarity=0.369 Sum_probs=160.4
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+|++.+.++|.++||..|+|+|.++++.++.. .+++++++||||||||++|++|+++.+... ..++++||++||++|
T Consensus 98 ~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~--~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-~~~~~~lil~Pt~~L 174 (479)
T 3fmp_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYEL 174 (479)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSB--SCCEEEEECCSSSSHHHHHHHHHHTTCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCcEEEEcCCCCchhHHHHHHHHHHHhhc-CCCCcEEEEeChHHH
Confidence 39999999999999999999999999988651 248999999999999999999999888664 345589999999999
Q ss_pred HHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+.|+++.++++.... ++.+....++...... ....++|+|+||++|++++.+...
T Consensus 175 a~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~Ivv~Tp~~l~~~l~~~~~ 230 (479)
T 3fmp_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKF 230 (479)
T ss_dssp HHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCcccccc------------------------ccCCCCEEEECchHHHHHHHhcCC
Confidence 999999999887654 4667777766542211 123568999999999999977666
Q ss_pred CCCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
+.+.++++||+||||++++ .++...+..+...+. +..++++
T Consensus 231 ~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~ 272 (479)
T 3fmp_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLL 272 (479)
T ss_dssp CCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSC--------------------------------------TTSEEEE
T ss_pred cCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCC--------------------------------------ccceEEE
Confidence 7788999999999999886 466666666655433 2238899
Q ss_pred EEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEec-cCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHH
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLIC-ESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCT 350 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~ 350 (515)
+|||++.....+....+..|..+......... ..+.+....+ ....+...+..++......++||||+++..++.+++
T Consensus 273 ~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~ 351 (479)
T 3fmp_B 273 FSATFEDSVWKFAQKVVPDPNVIKLKREEETL-DTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAA 351 (479)
T ss_dssp EESCCCHHHHHHHHHHSSSEEEEEEC------------------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHcCCCeEEeccccccCc-CCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHH
Confidence 99999888777787788888777665543333 2333443333 345677777777777778899999999999999999
Q ss_pred HHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC------ChhhhHHhhh
Q 010196 351 LLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA------YIKTYIHRAG 424 (515)
Q Consensus 351 ~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~------s~~~~~Qr~G 424 (515)
.|...+ ..+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|. +...|+||+|
T Consensus 352 ~L~~~~---~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~G 428 (479)
T 3fmp_B 352 ELSKEG---HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIG 428 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhCC---ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhc
Confidence 998765 8899999999999999999999999999999999999999999999999999994 5689999999
Q ss_pred hcccCCCCccEEEEeechh-HHHHHHHHHHh
Q 010196 425 RTARAGQLGRCFTLLHKDE-VKRFKKLLQKA 454 (515)
Q Consensus 425 R~gR~g~~g~~~~~~~~~d-~~~~~~~~~~~ 454 (515)
|+||.|+.|.|++|+++.+ ...+..+.+.+
T Consensus 429 RagR~g~~G~~i~~~~~~~~~~~~~~i~~~~ 459 (479)
T 3fmp_B 429 RTGRFGKRGLAVNMVDSKHSMNILNRIQEHF 459 (479)
T ss_dssp -------------------------------
T ss_pred ccccCCCCceEEEEEcCcchHHHHHHHHHHh
Confidence 9999999999999998765 44455554433
No 13
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4e-54 Score=428.27 Aligned_cols=351 Identities=26% Similarity=0.447 Sum_probs=165.8
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+.+..+||.+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..++++||++|+++|+
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-~~~~~~lil~P~~~L~ 102 (394)
T 1fuu_A 28 LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VKAPQALMLAPTRELA 102 (394)
T ss_dssp CCHHHHHHHHHHTCCSCCHHHHHHHHHHHH----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-CCSCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHhhcc-CCCCCEEEEcCCHHHH
Confidence 999999999999999999999999998865 78999999999999999999999887653 3456899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+.+.++++....++++..++|+.........+ .+++|+|+||++|.+.+.. ..+.
T Consensus 103 ~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~ 159 (394)
T 1fuu_A 103 LQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL----------------------RDAQIVVGTPGRVFDNIQR-RRFR 159 (394)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHH----------------------HHCSEEEECHHHHHHHHHT-TSSC
T ss_pred HHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhc----------------------CCCCEEEECHHHHHHHHHh-CCcc
Confidence 9999999999988889999999998866553322 1459999999999998876 3456
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++||+||||++.+.++...+..++..+. +..+++++||
T Consensus 160 ~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~i~~SA 201 (394)
T 1fuu_A 160 TDKIKMFILDEADEMLSSGFKEQIYQIFTLLP--------------------------------------PTTQVVLLSA 201 (394)
T ss_dssp CTTCCEEEEETHHHHHHTTCHHHHHHHHHHSC--------------------------------------TTCEEEEECS
T ss_pred hhhCcEEEEEChHHhhCCCcHHHHHHHHHhCC--------------------------------------CCceEEEEEE
Confidence 78899999999999988888877777776643 2237899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEecc-CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHh
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICE-SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLN 353 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~ 353 (515)
|++..........+..|..+.......... .+........ ...+...+..++.....+++||||++++.++.+++.|+
T Consensus 202 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~ 280 (394)
T 1fuu_A 202 TMPNDVLEVTTKFMRNPVRILVKKDELTLE-GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLR 280 (394)
T ss_dssp SCCHHHHHHHHHHCCSCEEEEECC--------------------------------------------------------
T ss_pred ecCHHHHHHHHHhcCCCeEEEecCccccCC-CceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHH
Confidence 998777676666677777665544332222 2233333222 33366677777777777899999999999999999998
Q ss_pred hcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCc
Q 010196 354 HFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLG 433 (515)
Q Consensus 354 ~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g 433 (515)
..+ ..+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.+...|+||+||+||.|++|
T Consensus 281 ~~~---~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g 357 (394)
T 1fuu_A 281 NDK---FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKG 357 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HcC---CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccCCCCCc
Confidence 765 78999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEeechhHHHHHHHHHHhc
Q 010196 434 RCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 434 ~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.|++++++.|...+..+.+.+.
T Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~ 379 (394)
T 1fuu_A 358 VAINFVTNEDVGAMRELEKFYS 379 (394)
T ss_dssp ----------------------
T ss_pred eEEEEEchhHHHHHHHHHHHhC
Confidence 9999999999888877766543
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=7.1e-51 Score=396.03 Aligned_cols=334 Identities=28% Similarity=0.429 Sum_probs=272.8
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
|++++.++|+++||.+|+|+|.++++.+.. ++++++.+|||+|||++|++|+++. +.+++|++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~----~~~~lv~~~TGsGKT~~~~~~~~~~-------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQ----GKNVVVRAKTGSGKTAAYAIPILEL-------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHH-------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEcCCCCcHHHHHHHHHHhh-------cCCEEEEeCCHHHH
Confidence 578999999999999999999999988764 8899999999999999999998853 34799999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.+++++...+.++..++|+.........+ ..++|+|+||++|.+.+.. ..+.
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~i~v~T~~~l~~~~~~-~~~~ 126 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV----------------------RNADIVVATPGRLLDLWSK-GVID 126 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH----------------------TTCSEEEECHHHHHHHHHT-TSCC
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc----------------------CCCCEEEECHHHHHHHHHc-CCcc
Confidence 9999999999888889999999988766553322 2469999999999998876 4456
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++||+||||++.+.++...+..++..... ..+.+++||
T Consensus 127 ~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~SA 168 (337)
T 2z0m_A 127 LSSFEIVIIDEADLMFEMGFIDDIKIILAQTSN--------------------------------------RKITGLFSA 168 (337)
T ss_dssp GGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTT--------------------------------------CSEEEEEES
T ss_pred hhhCcEEEEEChHHhhccccHHHHHHHHhhCCc--------------------------------------ccEEEEEeC
Confidence 788999999999999888887777777765432 126788999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhh
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (515)
|++..........+.++..+..... ...+.......... .......+....+.++||||++++.++.+++.|.
T Consensus 169 T~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~- 241 (337)
T 2z0m_A 169 TIPEEIRKVVKDFITNYEEIEACIG----LANVEHKFVHVKDD--WRSKVQALRENKDKGVIVFVRTRNRVAKLVRLFD- 241 (337)
T ss_dssp CCCHHHHHHHHHHSCSCEEEECSGG----GGGEEEEEEECSSS--SHHHHHHHHTCCCSSEEEECSCHHHHHHHHTTCT-
T ss_pred cCCHHHHHHHHHhcCCceeeecccc----cCCceEEEEEeChH--HHHHHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh-
Confidence 9987766666666666655433211 11222333333322 2233466666778899999999999999998875
Q ss_pred cCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCcc
Q 010196 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (515)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 434 (515)
.+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|++++||++++|.++..|+||+||+||.|++|.
T Consensus 242 ------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~ 315 (337)
T 2z0m_A 242 ------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKGE 315 (337)
T ss_dssp ------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGGGCCEE
T ss_pred ------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccCCCCce
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeechhHHHHHHHHHHh
Q 010196 435 CFTLLHKDEVKRFKKLLQKA 454 (515)
Q Consensus 435 ~~~~~~~~d~~~~~~~~~~~ 454 (515)
|++|+. .|...++++.+.+
T Consensus 316 ~~~~~~-~~~~~~~~i~~~~ 334 (337)
T 2z0m_A 316 AITFIL-NEYWLEKEVKKVS 334 (337)
T ss_dssp EEEEES-SCHHHHHHHC---
T ss_pred EEEEEe-CcHHHHHHHHHHh
Confidence 999999 7777777765543
No 15
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=8.1e-51 Score=414.52 Aligned_cols=371 Identities=21% Similarity=0.306 Sum_probs=282.4
Q ss_pred CCHHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 35 LDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 35 l~~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+++.+.+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++.. ...+||++|+++|
T Consensus 9 L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~----g~d~lv~apTGsGKTl~~~lp~l~~-------~g~~lvi~P~~aL 77 (523)
T 1oyw_A 9 LESGAKQVLQETFGYQQFRPGQEEIIDTVLS----GRDCLVVMPTGGGKSLCYQIPALLL-------NGLTVVVSPLISL 77 (523)
T ss_dssp HHHHHHHHHHHTTCCSSCCTTHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHS-------SSEEEEECSCHHH
T ss_pred CCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEECCCCcHHHHHHHHHHHHh-------CCCEEEECChHHH
Confidence 89999999998 8999999999999998865 8999999999999999999998832 2379999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|+.+.++.+ ++.+..+.++.+........ .......++|+|+||++|...... ..+
T Consensus 78 ~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~-----------------~~~~~~~~~ilv~Tpe~l~~~~~~-~~l 135 (523)
T 1oyw_A 78 MKDQVDQLQAN----GVAAACLNSTQTREQQLEVM-----------------TGCRTGQIRLLYIAPERLMLDNFL-EHL 135 (523)
T ss_dssp HHHHHHHHHHT----TCCEEEECTTSCHHHHHHHH-----------------HHHHHTCCSEEEECHHHHTSTTHH-HHH
T ss_pred HHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHH-----------------HHHhcCCCCEEEECHHHHhChHHH-HHH
Confidence 99999999886 67888888887755442211 011234589999999998532111 112
Q ss_pred CCCcceEEEEcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 194 TLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
...++++||+||||++.+++ |...+..+...... .+..++++
T Consensus 136 ~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~------------------------------------~~~~~~i~ 179 (523)
T 1oyw_A 136 AHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQR------------------------------------FPTLPFMA 179 (523)
T ss_dssp TTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHH------------------------------------CTTSCEEE
T ss_pred hhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHh------------------------------------CCCCCEEE
Confidence 34689999999999986654 22222221111100 13347899
Q ss_pred EEEEecCCchh-hh-hcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHH
Q 010196 272 LSATLTQDPNK-LA-QLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (515)
Q Consensus 272 ~SaT~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (515)
+|||++..... +. ...+.++..+....... ...+.......+...+..++....+.++||||++++.++.++
T Consensus 180 lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~------~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~ 253 (523)
T 1oyw_A 180 LTATADDTTRQDIVRLLGLNDPLIQISSFDRP------NIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTA 253 (523)
T ss_dssp EESCCCHHHHHHHHHHHTCCSCEEEECCCCCT------TEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC------ceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHH
Confidence 99999765443 22 23445565554433221 122233344667778888888777889999999999999999
Q ss_pred HHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccC
Q 010196 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARA 429 (515)
Q Consensus 350 ~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~ 429 (515)
+.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||++++|.|...|+||+||+||.
T Consensus 254 ~~L~~~g---~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~ 330 (523)
T 1oyw_A 254 ARLQSKG---ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRD 330 (523)
T ss_dssp HHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred HHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCC
Confidence 9999876 8899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhHHHHHHHHHHHHHHHHHhhccccc
Q 010196 430 GQLGRCFTLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLRPVYKSALDKLKETVESEAHRKHT 496 (515)
Q Consensus 430 g~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (515)
|.+|.|++|+++.|...++.++.... + +.........++.+..+++...|++..
T Consensus 331 g~~~~~~l~~~~~d~~~~~~~~~~~~---------~----~~~~~~~~~~l~~m~~~~~~~~crr~~ 384 (523)
T 1oyw_A 331 GLPAEAMLFYDPADMAWLRRCLEEKP---------Q----GQLQDIERHKLNAMGAFAEAQTCRRLV 384 (523)
T ss_dssp SSCEEEEEEECHHHHHHHHHHHHTSC---------C----SHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred CCCceEEEEeCHHHHHHHHHHHhccC---------c----HHHHHHHHHHHHHHHHHHhccccHhhh
Confidence 99999999999999988888877511 1 111223334455666666666666643
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=4e-50 Score=413.11 Aligned_cols=339 Identities=20% Similarity=0.289 Sum_probs=261.3
Q ss_pred CCCHHHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 34 CLDPRLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 34 ~l~~~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
++++.+.+.|++ +||..|+|+|.++++.++. |+|+++.+|||+|||++|++|++. ...++||++|+++
T Consensus 27 ~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~----g~d~lv~~pTGsGKTl~~~lpal~-------~~g~~lVisP~~~ 95 (591)
T 2v1x_A 27 PWSGKVKDILQNVFKLEKFRPLQLETINVTMA----GKEVFLVMPTGGGKSLCYQLPALC-------SDGFTLVICPLIS 95 (591)
T ss_dssp TTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHT----TCCEEEECCTTSCTTHHHHHHHHT-------SSSEEEEECSCHH
T ss_pred CCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHc----CCCEEEEECCCChHHHHHHHHHHH-------cCCcEEEEeCHHH
Confidence 388999999998 7999999999999998865 899999999999999999999983 2348999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh---ccCCcEEEeCChHHH-----
Q 010196 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL---QSAVDILVATPGRLM----- 184 (515)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~Ivv~Tp~~l~----- 184 (515)
|+.|+.+.++.+ ++++..+.|+.+..+.... +..+ ...++|+|+||++|.
T Consensus 96 L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~------------------~~~l~~~~~~~~Ilv~Tpe~L~~~~~~ 153 (591)
T 2v1x_A 96 LMEDQLMVLKQL----GISATMLNASSSKEHVKWV------------------HAEMVNKNSELKLIYVTPEKIAKSKMF 153 (591)
T ss_dssp HHHHHHHHHHHH----TCCEEECCSSCCHHHHHHH------------------HHHHHCTTCCCCEEEECHHHHHSCHHH
T ss_pred HHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHH------------------HHHhhcccCCCCEEEEChhHhhccHHH
Confidence 999999999987 7888999998876554221 1122 356899999999874
Q ss_pred -HHHhcCcCCCCCcceEEEEcchhHHHHHH--HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCC
Q 010196 185 -DHINATRGFTLEHLCYLVVDETDRLLREA--YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKD 261 (515)
Q Consensus 185 -~~l~~~~~~~~~~~~~vViDEah~l~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (515)
+.+.. ...+.++++|||||||++.+++ |...+..+ ..+..
T Consensus 154 ~~~l~~--~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l--------------------------~~l~~--------- 196 (591)
T 2v1x_A 154 MSRLEK--AYEARRFTRIAVDEVHCCSQWGHDFRPDYKAL--------------------------GILKR--------- 196 (591)
T ss_dssp HHHHHH--HHHTTCEEEEEEETGGGGSTTCTTCCGGGGGG--------------------------GHHHH---------
T ss_pred HHHHHh--hhhccCCcEEEEECcccccccccccHHHHHHH--------------------------HHHHH---------
Confidence 22322 2345689999999999987654 32222111 00000
Q ss_pred CCCCceeeEEEEEEecCCchhhhhcc--cCCCeeEeeCCccccCCcccceeEEeccCC---CcHHHHHHHHHh-cCCCeE
Q 010196 262 KPYPRLVKMVLSATLTQDPNKLAQLD--LHHPLFLTTGETRYKLPERLESYKLICESK---LKPLYLVALLQS-LGEEKC 335 (515)
Q Consensus 262 ~~~~~~~~i~~SaT~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~l~~-~~~~~~ 335 (515)
..+..+++++|||++.......... +..+..+........ + .+.+..... .+...+..++.. ..+.++
T Consensus 197 -~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~n----l-~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~ 270 (591)
T 2v1x_A 197 -QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPN----L-YYEVRQKPSNTEDFIEDIVKLINGRYKGQSG 270 (591)
T ss_dssp -HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTT----E-EEEEEECCSSHHHHHHHHHHHHTTTTTTCEE
T ss_pred -hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcc----c-EEEEEeCCCcHHHHHHHHHHHHHHhccCCCe
Confidence 0133588999999987654433332 334444433322211 1 222222222 233455666653 357899
Q ss_pred EEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCC
Q 010196 336 IVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (515)
Q Consensus 336 lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s 415 (515)
||||++++.++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|++++||+|++|.|
T Consensus 271 IVf~~sr~~~e~la~~L~~~g---~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s 347 (591)
T 2v1x_A 271 IIYCFSQKDSEQVTVSLQNLG---IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKS 347 (591)
T ss_dssp EEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSS
T ss_pred EEEeCcHHHHHHHHHHHHHCC---CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCC
Confidence 999999999999999999876 88999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHH
Q 010196 416 IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLL 451 (515)
Q Consensus 416 ~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~ 451 (515)
+..|+||+||+||.|++|.|++|+++.|...+..++
T Consensus 348 ~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 348 MENYYQESGRAGRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp HHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred HHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHHH
Confidence 999999999999999999999999999987776664
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-51 Score=417.14 Aligned_cols=352 Identities=22% Similarity=0.321 Sum_probs=244.1
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.+.+.+.+.||..|+++|.+|++.++.. .++++++.+|||+|||++|+++++..+... ..+.++||++|+++|
T Consensus 125 ~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~--~~~~~ll~apTGsGKT~~~~~~il~~l~~~-~~~~~vLvl~P~~~L 201 (508)
T 3fho_A 125 XXXXXXXXXXXXXXXXXXXKIQEKALPLLLSN--PPRNMIGQSQSGTGKTAAFALTMLSRVDAS-VPKPQAICLAPSREL 201 (508)
T ss_dssp --------------CEECCCTTSSSHHHHHCS--SCCCEEEECCSSTTSHHHHHHHHHHHSCTT-CCSCCEEEECSCHHH
T ss_pred ccccccccccccccccCcHHHHHHHHHHHHcC--CCCCEEEECCCCccHHHHHHHHHHHHHHhC-CCCceEEEEECcHHH
Confidence 47888999999999999999999999988752 249999999999999999999999988664 345689999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|+.+.+++++...++.+....++..... ....++|+|+||++|.+.+.. ..+
T Consensus 202 ~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~Ivv~T~~~l~~~l~~-~~~ 255 (508)
T 3fho_A 202 ARQIMDVVTEMGKYTEVKTAFGIKDSVPKG-------------------------AKIDAQIVIGTPGTVMDLMKR-RQL 255 (508)
T ss_dssp HHHHHHHHHHHSTTSSCCEEC-----------------------------------CCCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHhCCccCeeEEEEeCCccccc-------------------------ccCCCCEEEECHHHHHHHHHc-CCc
Confidence 999999999998776666665555433211 123579999999999998876 446
Q ss_pred CCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 194 TLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
.+.++++||+||||++.+ .++...+..+..... +..+++++
T Consensus 256 ~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~l 297 (508)
T 3fho_A 256 DARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLP--------------------------------------RNTQIVLF 297 (508)
T ss_dssp CCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSC--------------------------------------TTCEEEEE
T ss_pred cccCCCEEEEechhhhcccCCcHHHHHHHHHhCC--------------------------------------cCCeEEEE
Confidence 688999999999999876 566666666666543 12378999
Q ss_pred EEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHH
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLL 352 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L 352 (515)
|||++.....+.......+..+...............+........+...+..++.....+++||||+++.+++.+++.|
T Consensus 298 SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L 377 (508)
T 3fho_A 298 SATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRM 377 (508)
T ss_dssp ESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHH
T ss_pred eCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHH
Confidence 99998777777777777776665544333322222223233344556777888887778899999999999999999999
Q ss_pred hhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC------CChhhhHHhhhhc
Q 010196 353 NHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRT 426 (515)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p------~s~~~~~Qr~GR~ 426 (515)
...+ ..+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|++++||++++| .+...|+||+||+
T Consensus 378 ~~~~---~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRa 454 (508)
T 3fho_A 378 TADG---HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRT 454 (508)
T ss_dssp TTTT---CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCC
T ss_pred HhCC---CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhc
Confidence 8765 789999999999999999999999999999999999999999999999999999 7899999999999
Q ss_pred ccCCCCccEEEEeec-hhHHHHHHHHHHhc
Q 010196 427 ARAGQLGRCFTLLHK-DEVKRFKKLLQKAD 455 (515)
Q Consensus 427 gR~g~~g~~~~~~~~-~d~~~~~~~~~~~~ 455 (515)
||.|+.|.|++|+.+ .+...+..+.+...
T Consensus 455 gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~ 484 (508)
T 3fho_A 455 GRFGRVGVSINFVHDKKSWEEMNAIQEYFQ 484 (508)
T ss_dssp C-----CEEEEEECTTTSSSSHHHHHHHSC
T ss_pred CCCCCCcEEEEEEeChHHHHHHHHHHHHHC
Confidence 999999999999984 45555666655543
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=3.2e-48 Score=387.69 Aligned_cols=372 Identities=17% Similarity=0.223 Sum_probs=261.2
Q ss_pred HHHHHHHh-CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 38 RLKVALQN-MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 38 ~l~~~l~~-~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
++.+.+++ +|| +|+|+|.++++.++. ++|+++.||||+|||++|++|++..+. .++++||++||++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~----~~~~lv~apTGsGKT~~~l~~~~~~~~----~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTT----TCCEECCSCSSSSHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHhc----CCCEEEEEECCHHHHHH
Confidence 45566665 577 899999999988764 889999999999999999999887663 34589999999999999
Q ss_pred HHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccC-CcEEEeCChHHHHHHhcCcCCCC
Q 010196 117 VKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTL 195 (515)
Q Consensus 117 ~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~~~ 195 (515)
+++.+++++. .++++..++|+.+..+.... +..+..+ ++|+|+||++|.+++.. +.+
T Consensus 80 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~------------------~~~l~~~~~~Iiv~Tp~~l~~~l~~---~~~ 137 (414)
T 3oiy_A 80 TLERLQKLAD-EKVKIFGFYSSMKKEEKEKF------------------EKSFEEDDYHILVFSTQFVSKNREK---LSQ 137 (414)
T ss_dssp HHHHHHHHCC-SSCCEEECCTTSCHHHHHHH------------------HHHHHHTCCSEEEEEHHHHHHCHHH---HTT
T ss_pred HHHHHHHHcc-CCceEEEEECCCChhhHHHH------------------HHHhhcCCCCEEEECHHHHHHHHHH---hcc
Confidence 9999999988 78999999999987443211 1223343 89999999999888764 446
Q ss_pred CcceEEEEcchhHHHH-----------HHHHhH-HHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCC
Q 010196 196 EHLCYLVVDETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKP 263 (515)
Q Consensus 196 ~~~~~vViDEah~l~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (515)
.++++||+||||++.+ .+|... +..++..++.... ......
T Consensus 138 ~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~---------------------------~~~l~~ 190 (414)
T 3oiy_A 138 KRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI---------------------------YERPKN 190 (414)
T ss_dssp CCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCC---------------------------CCCCTT
T ss_pred ccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchh---------------------------hhhccc
Confidence 6899999999998764 333333 4555554431100 000000
Q ss_pred CCceeeEEEEEE-ecCCchh-hhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCC
Q 010196 264 YPRLVKMVLSAT-LTQDPNK-LAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSS 341 (515)
Q Consensus 264 ~~~~~~i~~SaT-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s 341 (515)
.+..+++++||| .+..... +....+. +.... .......+.+..... .+...+..++.. .+.++||||++
T Consensus 191 ~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~i~~~~~~~---~~~~~l~~~l~~-~~~~~lVF~~~ 261 (414)
T 3oiy_A 191 LKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGR-LVSVARNITHVRISS---RSKEKLVELLEI-FRDGILIFAQT 261 (414)
T ss_dssp CCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSC-CCCCCCSEEEEEESS---CCHHHHHHHHHH-HCSSEEEEESS
T ss_pred CCCceEEEEecCCCcchhHHHHHHHhhc----cCcCc-cccccccchheeecc---CHHHHHHHHHHH-cCCCEEEEECC
Confidence 133488999999 4444332 2211111 11111 111222333333332 567777888777 35899999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEE-EccCccCHHHHHHHHHHHhcCCceEEEe----cCCccccCCCCC-CCEEEEccCC--
Q 010196 342 VESTHRLCTLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKP-- 413 (515)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~-~~~~~~~~~~r~~~l~~f~~g~~~vLv~----T~~~~~GiDi~~-v~~VI~~~~p-- 413 (515)
+..++.+++.|...+ +.+. .+||+ +|. ++.|++|+.+|||| |+++++|+|+|+ +++||+|++|
T Consensus 262 ~~~~~~l~~~L~~~~---~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~ 332 (414)
T 3oiy_A 262 EEEGKELYEYLKRFK---FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSG 332 (414)
T ss_dssp HHHHHHHHHHHHHTT---CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTT
T ss_pred HHHHHHHHHHHHHcC---CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEEECCCCC
Confidence 999999999999866 7887 88985 344 99999999999999 999999999999 9999999999
Q ss_pred CChhhhHHhhhhcccCC----CCccEEEEeechhHHHHHHHHHHhcC-CCCCccCCChhhHhhhHHHHHHHHHHHHHHH
Q 010196 414 AYIKTYIHRAGRTARAG----QLGRCFTLLHKDEVKRFKKLLQKADN-DSCPIHSIPSSLIESLRPVYKSALDKLKETV 487 (515)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g----~~g~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (515)
.+..+|+||+||+||.| +.|.+++|+ .|...+..+.+.+.. ...+...++...++.+........+++++.+
T Consensus 333 ~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l 409 (414)
T 3oiy_A 333 PDVYTYIQASGRSSRILNGVLVKGVSVIFE--EDEEIFESLKTRLLLIAEEEIIEEAEANWKELVHEVEESRRRSEREL 409 (414)
T ss_dssp TCHHHHHHHHGGGCCEETTEECCEEEEEEC--CCHHHHHHHHHHHHHHHCCCEEEGGGCCHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHhCccccCCCCCCcceEEEEEE--ccHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999988 479999998 455555555554430 1223333334444444444444444444433
No 19
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=4.4e-45 Score=379.71 Aligned_cols=339 Identities=18% Similarity=0.193 Sum_probs=199.0
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccC-cccEEEEcccHHHHHHHHHHHHHhc
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR-CLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~-~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+..+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+...+.. +.++||++||++|+.||.+.+++++
T Consensus 4 ~~~~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 79 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 79 (556)
T ss_dssp ----CCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHc----CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 445899999999998864 88999999999999999999999988774321 5689999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
+..++++..++|+.+...... .+..+++|+|+||++|.+++.......+.++++||+||
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDE 138 (556)
T 4a2p_A 80 ERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDE 138 (556)
T ss_dssp GGGTCCEEECCCC-----CHH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEET
T ss_pred cccCceEEEEeCCCCcchhHH---------------------HhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEEC
Confidence 888999999999886544322 22345799999999999999774332688999999999
Q ss_pred hhHHHHHHHHhHH-HHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCch-hh
Q 010196 206 TDRLLREAYQAWL-PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN-KL 283 (515)
Q Consensus 206 ah~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~-~~ 283 (515)
||++.+.+....+ ..++...... ..+..+++++|||+..... .+
T Consensus 139 ah~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~l~lSAT~~~~~~~~~ 184 (556)
T 4a2p_A 139 CHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAKNI 184 (556)
T ss_dssp GGGCSTTSHHHHHHHHHHHHHHCC-------------------------------------CCEEEEEESCCCCTTCSSH
T ss_pred CcccCCcchHHHHHHHHHHhhhcc----------------------------------cCCCCeEEEEeCCcccCchhhH
Confidence 9998766542222 1222111000 0123478999999854210 00
Q ss_pred h----------h------------------cccCCCeeEeeCCccccCCcc-----------------------------
Q 010196 284 A----------Q------------------LDLHHPLFLTTGETRYKLPER----------------------------- 306 (515)
Q Consensus 284 ~----------~------------------~~~~~~~~~~~~~~~~~~~~~----------------------------- 306 (515)
. . .....|......... .....
T Consensus 185 ~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (556)
T 4a2p_A 185 EETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKR-RIHNPFAAIISNLMSETEALMRTIYSVDTLSQNS 263 (556)
T ss_dssp HHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCC-CcCChHHHHHHHHHHHHHHHHHHHhhhhhhhccc
Confidence 0 0 000111111000000 00000
Q ss_pred ------------c------------------------------------------------------ce-----------
Q 010196 307 ------------L------------------------------------------------------ES----------- 309 (515)
Q Consensus 307 ------------~------------------------------------------------------~~----------- 309 (515)
+ ..
T Consensus 264 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 343 (556)
T 4a2p_A 264 KKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPYT 343 (556)
T ss_dssp -CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred ccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCC
Confidence 0 00
Q ss_pred --------------------eEEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCC--------
Q 010196 310 --------------------YKLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE-------- 357 (515)
Q Consensus 310 --------------------~~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~-------- 357 (515)
.........|...+..++.. ..+.++||||+++..++.+++.|.....
T Consensus 344 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~ 423 (556)
T 4a2p_A 344 ELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGV 423 (556)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC
T ss_pred HHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeE
Confidence 00000124466666666653 4578999999999999999999976410
Q ss_pred -CceeEEEccCccCHHHHHHHHHHHhc-CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE
Q 010196 358 -LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC 435 (515)
Q Consensus 358 -~~~~v~~~~~~~~~~~r~~~l~~f~~-g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~ 435 (515)
.+.....+||+|++.+|.++++.|++ |+++|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+
T Consensus 424 ~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~ 501 (556)
T 4a2p_A 424 LMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSKC 501 (556)
T ss_dssp ------------------------------CCEEEEEC-----------CEEEEETCCSCHHHHHHC----------CCE
T ss_pred EEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCceE
Confidence 13455667888999999999999999 999999999999999999999999999999999999999999 999 78999
Q ss_pred EEEeechhHHHH
Q 010196 436 FTLLHKDEVKRF 447 (515)
Q Consensus 436 ~~~~~~~d~~~~ 447 (515)
++++++.+....
T Consensus 502 ~~l~~~~~~~~~ 513 (556)
T 4a2p_A 502 ILVTSKTEVVEN 513 (556)
T ss_dssp EEEESCHHHHHH
T ss_pred EEEEeCcchHHH
Confidence 999998876543
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.7e-44 Score=384.29 Aligned_cols=336 Identities=21% Similarity=0.269 Sum_probs=256.7
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+.++++||.+|+|+|.++++.+ +..+++++++||||||||++|.+|+++.+... +.+++|++|+++|+
T Consensus 8 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~---~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~~l~i~P~raLa 81 (720)
T 2zj8_A 8 VDERIKSTLKERGIESFYPPQAEALKSG---ILEGKNALISIPTASGKTLIAEIAMVHRILTQ---GGKAVYIVPLKALA 81 (720)
T ss_dssp SCHHHHHHHHHTTCCBCCHHHHHHHTTT---GGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH---CSEEEEECSSGGGH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHH---hcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC---CCEEEEEcCcHHHH
Confidence 9999999999999999999999997652 23589999999999999999999999888642 34899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++++.+ .+++++.++|+...... ....++|+|+||+++..++.+. ...
T Consensus 82 ~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~~~-~~~ 135 (720)
T 2zj8_A 82 EEKFQEFQDWEK-IGLRVAMATGDYDSKDE------------------------WLGKYDIIIATAEKFDSLLRHG-SSW 135 (720)
T ss_dssp HHHHHHTGGGGG-GTCCEEEECSCSSCCCG------------------------GGGGCSEEEECHHHHHHHHHHT-CTT
T ss_pred HHHHHHHHHHHh-cCCEEEEecCCCCcccc------------------------ccCCCCEEEECHHHHHHHHHcC-hhh
Confidence 999999976554 48899999997653211 1135799999999999888763 344
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++||+||||++.+..++..++.++..+.. ..+++++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~--------------------------------------~~~ii~lSA 177 (720)
T 2zj8_A 136 IKDVKILVADEIHLIGSRDRGATLEVILAHMLG--------------------------------------KAQIIGLSA 177 (720)
T ss_dssp GGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT--------------------------------------TBEEEEEEC
T ss_pred hhcCCEEEEECCcccCCCcccHHHHHHHHHhhc--------------------------------------CCeEEEEcC
Confidence 789999999999999877888888888877641 138899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcc--cceeEEecc-----CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHH
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPER--LESYKLICE-----SKLKPLYLVALLQSLGEEKCIVFTSSVESTHR 347 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-----~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~ 347 (515)
|+++ ...+..+... + .+........+... ......... ...+...+.+.+. .++++||||++++.++.
T Consensus 178 Tl~n-~~~~~~~l~~-~-~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~ 252 (720)
T 2zj8_A 178 TIGN-PEELAEWLNA-E-LIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMRRKAER 252 (720)
T ss_dssp CCSC-HHHHHHHTTE-E-EEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCHHHHHH
T ss_pred CcCC-HHHHHHHhCC-c-ccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCHHHHHH
Confidence 9864 3444433211 1 11111100000000 000000111 2344555555554 36899999999999999
Q ss_pred HHHHHhhcCCC------------------------------ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccc
Q 010196 348 LCTLLNHFGEL------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTR 397 (515)
Q Consensus 348 l~~~L~~~~~~------------------------------~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~ 397 (515)
++..|.+.... ...+..+||++++.+|..+++.|++|..+|||||+++++
T Consensus 253 ~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~ 332 (720)
T 2zj8_A 253 VALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVATPTLSA 332 (720)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGG
T ss_pred HHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhc
Confidence 99998753110 124889999999999999999999999999999999999
Q ss_pred cCCCCCCCEEEE----cc----CCCChhhhHHhhhhcccCCC--CccEEEEeechhHH
Q 010196 398 GMDVEGVNNVVN----YD----KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVK 445 (515)
Q Consensus 398 GiDi~~v~~VI~----~~----~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~d~~ 445 (515)
|+|+|++++||+ || .|.+..+|+||+|||||.|. .|.|++++++.+..
T Consensus 333 Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 333 GINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp GCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHH
T ss_pred cCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHH
Confidence 999999999998 66 58899999999999999984 58999999888743
No 21
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1e-44 Score=377.01 Aligned_cols=338 Identities=18% Similarity=0.206 Sum_probs=223.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-CcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
+|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+..... .+.++||++||++|+.|+.+.++++++..
T Consensus 4 ~~~~~Q~~~i~~~~~----~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 4 KPRNYQLELALPAKK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHHHhC----CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 799999999998864 8999999999999999999999998877431 25689999999999999999999999888
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
++++..++|+.+...... .+..+++|+|+||++|.+++.......+.++++||+||||+
T Consensus 80 ~~~~~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~ 138 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQ---------------------HIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHN 138 (555)
T ss_dssp TCCEEEECTTTGGGSCHH---------------------HHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGG
T ss_pred CcEEEEEcCCCcchhhHH---------------------HHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccc
Confidence 999999999986443322 22345799999999999998874433688899999999999
Q ss_pred HHHHHH-HhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCc-------
Q 010196 209 LLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP------- 280 (515)
Q Consensus 209 l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~------- 280 (515)
+.+.+. ...+..++...... ...+..+++++|||+....
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~l~lSAT~~~~~~~~~~~~ 185 (555)
T 3tbk_A 139 TSKNHPYNQIMFRYLDHKLGE---------------------------------SRDPLPQVVGLTASVGVGDAKTAEEA 185 (555)
T ss_dssp CSTTCHHHHHHHHHHHHHTSS---------------------------------CCSCCCEEEEEESCCCCTTCCSHHHH
T ss_pred cCCcchHHHHHHHHHHhhhcc---------------------------------ccCCCCeEEEEecCcccCccccHHHH
Confidence 876532 22222222221100 0013347899999996432
Q ss_pred -hhhhh--ccc-------------------CCCeeEeeCCccccCCcc--------------------------------
Q 010196 281 -NKLAQ--LDL-------------------HHPLFLTTGETRYKLPER-------------------------------- 306 (515)
Q Consensus 281 -~~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~-------------------------------- 306 (515)
..+.. ..+ ..|......... .....
T Consensus 186 ~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 264 (555)
T 3tbk_A 186 MQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVAS-RTSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNR 264 (555)
T ss_dssp HHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCC-CSCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSC
T ss_pred HHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecC-cccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccc
Confidence 00000 001 111110000000 00000
Q ss_pred ---c-------c------------------------------------------------------ee------------
Q 010196 307 ---L-------E------------------------------------------------------SY------------ 310 (515)
Q Consensus 307 ---~-------~------------------------------------------------------~~------------ 310 (515)
. . .+
T Consensus 265 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (555)
T 3tbk_A 265 EFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISEDAQMTDALNYLKAFFHDVREAAFDET 344 (555)
T ss_dssp CSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----H
T ss_pred cccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchH
Confidence 0 0 00
Q ss_pred -------------------EEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCC---------C
Q 010196 311 -------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE---------L 358 (515)
Q Consensus 311 -------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~---------~ 358 (515)
........|...+..++.. ....++||||+++..++.+++.|...+. .
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 424 (555)
T 3tbk_A 345 ERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSFLKPGILT 424 (555)
T ss_dssp HHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECC
T ss_pred HHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEE
Confidence 0000124456666666654 3568999999999999999999987531 1
Q ss_pred ceeEEEccCccCHHHHHHHHHHHhc-CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEE
Q 010196 359 RIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFT 437 (515)
Q Consensus 359 ~~~v~~~~~~~~~~~r~~~l~~f~~-g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~ 437 (515)
+.....+||+|++.+|.++++.|++ |+.+|||||+++++|+|+|++++||+||+|+|+..|+||+|| ||. +.|.+++
T Consensus 425 g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR~-~~g~~~~ 502 (555)
T 3tbk_A 425 GRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GRA-RDSKCFL 502 (555)
T ss_dssp C--------------------------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CTT-TSCEEEE
T ss_pred ecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-CcC-CCceEEE
Confidence 2345556779999999999999999 999999999999999999999999999999999999999999 998 7899999
Q ss_pred EeechhHHHHH
Q 010196 438 LLHKDEVKRFK 448 (515)
Q Consensus 438 ~~~~~d~~~~~ 448 (515)
|+++.+.....
T Consensus 503 l~~~~~~~~~~ 513 (555)
T 3tbk_A 503 LTSSADVIEKE 513 (555)
T ss_dssp EESCHHHHHHH
T ss_pred EEcCCCHHHHH
Confidence 99988765543
No 22
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=2.5e-45 Score=391.00 Aligned_cols=351 Identities=18% Similarity=0.182 Sum_probs=215.4
Q ss_pred HHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-CcccEEEEcccHHHHHHHH
Q 010196 40 KVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 40 ~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~ 118 (515)
..++..+||.+|+|+|.++++.++. |+|+++++|||+|||++|++|+++.+...+. .+.++||++||++|+.|+.
T Consensus 3 ~~~l~~~g~~~lr~~Q~~~i~~~l~----g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~ 78 (696)
T 2ykg_A 3 VSDTNLYSPFKPRNYQLELALPAMK----GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNK 78 (696)
T ss_dssp ----CTTC--CCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHH
T ss_pred CCcccccCCCCccHHHHHHHHHHHc----CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHH
Confidence 4567789999999999999998764 8999999999999999999999998876432 2358999999999999999
Q ss_pred HHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcc
Q 010196 119 DVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHL 198 (515)
Q Consensus 119 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~ 198 (515)
+.++++++..++++..++|+........ .+..+++|+|+||++|.+.+.......+.++
T Consensus 79 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~ 137 (696)
T 2ykg_A 79 SVFSKYFERHGYRVTGISGATAENVPVE---------------------QIVENNDIIILTPQILVNNLKKGTIPSLSIF 137 (696)
T ss_dssp HHHHHHTTTTTCCEEEECSSSCSSSCHH---------------------HHHHTCSEEEECHHHHHHHHHTTSSCCGGGC
T ss_pred HHHHHHhccCCceEEEEeCCccccccHH---------------------HhccCCCEEEECHHHHHHHHhcCcccccccc
Confidence 9999999888899999999875432221 2234679999999999999887432268889
Q ss_pred eEEEEcchhHHHHHHH-HhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEec
Q 010196 199 CYLVVDETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLT 277 (515)
Q Consensus 199 ~~vViDEah~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~ 277 (515)
++||+||||++.+... ...+..++...-. ....+..+++++|||+.
T Consensus 138 ~~vViDEaH~~~~~~~~~~i~~~~l~~~~~---------------------------------~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 138 TLMIFDECHNTSKQHPYNMIMFNYLDQKLG---------------------------------GSSGPLPQVIGLTASVG 184 (696)
T ss_dssp SEEEEETGGGCSTTCHHHHHHHHHHHHHHT---------------------------------TCCSCCCEEEEEESCCC
T ss_pred cEEEEeCCCcccCcccHHHHHHHHHHHhhc---------------------------------ccCCCCCeEEEEeCccc
Confidence 9999999999754321 1111112211000 00012237889999986
Q ss_pred CCc--------hhhhhc---------------------ccCCCeeEeeC-Ccccc-------------------------
Q 010196 278 QDP--------NKLAQL---------------------DLHHPLFLTTG-ETRYK------------------------- 302 (515)
Q Consensus 278 ~~~--------~~~~~~---------------------~~~~~~~~~~~-~~~~~------------------------- 302 (515)
... ..+... ....|...... .....
T Consensus 185 ~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs~~~~~l~~~i~~l~~~~~~~~ 264 (696)
T 2ykg_A 185 VGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFKYIIAQLMRDTESLAKRICKDL 264 (696)
T ss_dssp CSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHHSTTG
T ss_pred cCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 210 001000 00011100000 00000
Q ss_pred --C-----------------------------------------------------------------------------
Q 010196 303 --L----------------------------------------------------------------------------- 303 (515)
Q Consensus 303 --~----------------------------------------------------------------------------- 303 (515)
+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 344 (696)
T 2ykg_A 265 ENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDALIISEHARMKDALDYLKDFFSN 344 (696)
T ss_dssp GGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHH
Confidence 0
Q ss_pred -----CcccceeEE---------------e-ccCCCcHHHHHHHHHhc----CCCeEEEEcCChhhHHHHHHHHhhcCC-
Q 010196 304 -----PERLESYKL---------------I-CESKLKPLYLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE- 357 (515)
Q Consensus 304 -----~~~~~~~~~---------------~-~~~~~k~~~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~- 357 (515)
...+.+... . .....|...+..++... .+.++||||+++..++.+++.|...+.
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~ 424 (696)
T 2ykg_A 345 VRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKL 424 (696)
T ss_dssp HHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTC
T ss_pred HhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCc
Confidence 000000000 0 01345677777777654 567999999999999999999987542
Q ss_pred CceeEEEc--------cCccCHHHHHHHHHHHhc-CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhccc
Q 010196 358 LRIKIKEY--------SGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTAR 428 (515)
Q Consensus 358 ~~~~v~~~--------~~~~~~~~r~~~l~~f~~-g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR 428 (515)
..+.+..+ ||+|++.+|.++++.|++ |+.+|||||+++++|||+|++++||+||+|+++.+|+||+|| ||
T Consensus 425 ~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR 503 (696)
T 2ykg_A 425 SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GR 503 (696)
T ss_dssp CSCCEEC-----------------------------CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC---------
T ss_pred cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-Cc
Confidence 11456666 669999999999999998 999999999999999999999999999999999999999999 99
Q ss_pred CCCCccEEEEeechhHHHHHHH
Q 010196 429 AGQLGRCFTLLHKDEVKRFKKL 450 (515)
Q Consensus 429 ~g~~g~~~~~~~~~d~~~~~~~ 450 (515)
. +.|.++++++..+......+
T Consensus 504 ~-~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 504 A-RGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp --CCCEEEEEESCHHHHHHHHH
T ss_pred C-CCceEEEEecCCCHHHHHHH
Confidence 8 78999999998887554433
No 23
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.8e-44 Score=379.35 Aligned_cols=333 Identities=22% Similarity=0.295 Sum_probs=249.2
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+.++++||.+|+|+|.++++.++ ..+++++++||||||||+++.+++++.+... +.+++|++|+++|+
T Consensus 15 l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~---~~~~~~lv~apTGsGKT~~~~l~il~~~~~~---~~~il~i~P~r~La 88 (715)
T 2va8_A 15 LPSNVIEIIKKRGIKKLNPPQTEAVKKGL---LEGNRLLLTSPTGSGKTLIAEMGIISFLLKN---GGKAIYVTPLRALT 88 (715)
T ss_dssp SCHHHHHHHHTTSCCBCCHHHHHHHHTTT---TTTCCEEEECCTTSCHHHHHHHHHHHHHHHS---CSEEEEECSCHHHH
T ss_pred CCHHHHHHHHhCCCCCCCHHHHHHHHHHh---cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC---CCeEEEEeCcHHHH
Confidence 99999999999999999999999987633 4589999999999999999999999887642 35899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++.+. ..+++++..+|+....+. ....++|+|+||+++...+.+. ...
T Consensus 89 ~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~~~~~-~~~ 142 (715)
T 2va8_A 89 NEKYLTFKDWE-LIGFKVAMTSGDYDTDDA------------------------WLKNYDIIITTYEKLDSLWRHR-PEW 142 (715)
T ss_dssp HHHHHHHGGGG-GGTCCEEECCSCSSSCCG------------------------GGGGCSEEEECHHHHHHHHHHC-CGG
T ss_pred HHHHHHHHHhh-cCCCEEEEEeCCCCCchh------------------------hcCCCCEEEEcHHHHHHHHhCC-hhH
Confidence 99999996554 348899999998653221 1135799999999999988773 334
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
++++++||+||||.+.+..++..++.++..+. ..+++++||
T Consensus 143 l~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~---------------------------------------~~~ii~lSA 183 (715)
T 2va8_A 143 LNEVNYFVLDELHYLNDPERGPVVESVTIRAK---------------------------------------RRNLLALSA 183 (715)
T ss_dssp GGGEEEEEECSGGGGGCTTTHHHHHHHHHHHH---------------------------------------TSEEEEEES
T ss_pred hhccCEEEEechhhcCCcccchHHHHHHHhcc---------------------------------------cCcEEEEcC
Confidence 78999999999999877777777877776653 127899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCccc-------ceeEEecc---------CCCcHHHHHHHHHhcCCCeEEEE
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL-------ESYKLICE---------SKLKPLYLVALLQSLGEEKCIVF 338 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~---------~~~k~~~l~~~l~~~~~~~~lVf 338 (515)
|+++ ...+..+.. .+. +.......++.... ..+..... .......+...+. .++++|||
T Consensus 184 Tl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 258 (715)
T 2va8_A 184 TISN-YKQIAKWLG-AEP-VATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVF 258 (715)
T ss_dssp CCTT-HHHHHHHHT-CEE-EECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEE
T ss_pred CCCC-HHHHHHHhC-CCc-cCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEE
Confidence 9964 344433322 111 11110000000000 00000000 1223333343333 46899999
Q ss_pred cCChhhHHHHHHHHhhcCCC---------------------------------ceeEEEccCccCHHHHHHHHHHHhcCC
Q 010196 339 TSSVESTHRLCTLLNHFGEL---------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGK 385 (515)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~---------------------------------~~~v~~~~~~~~~~~r~~~l~~f~~g~ 385 (515)
|++++.++.+++.|...... ...+..+||+++..+|..+++.|++|.
T Consensus 259 ~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~ 338 (715)
T 2va8_A 259 RNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK 338 (715)
T ss_dssp CSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC
T ss_pred ECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC
Confidence 99999999999999764211 124889999999999999999999999
Q ss_pred ceEEEecCCccccCCCCCCCEEEE----cc-------CCCChhhhHHhhhhcccCCC--CccEEEEeechh
Q 010196 386 IQVLVSSDAMTRGMDVEGVNNVVN----YD-------KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDE 443 (515)
Q Consensus 386 ~~vLv~T~~~~~GiDi~~v~~VI~----~~-------~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~d 443 (515)
.+|||||+++++|+|+|++++||+ || .|.|..+|.||+|||||.|. .|.|++++++.+
T Consensus 339 ~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 339 IKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKE 409 (715)
T ss_dssp SCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCTTTCSCEEEEEECSCGG
T ss_pred CeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEeCCch
Confidence 999999999999999999999999 88 89999999999999999884 699999998776
No 24
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.7e-45 Score=396.21 Aligned_cols=336 Identities=18% Similarity=0.193 Sum_probs=249.3
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+...+...++.+|+|+|.+|++.+. .+++++++||||||||++|.+|++..+.. +.+++|++||++|+
T Consensus 169 l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~----~g~dvLV~ApTGSGKTlva~l~i~~~l~~----g~rvlvl~PtraLa 240 (1108)
T 3l9o_A 169 IAEHKRVNEARTYPFTLDPFQDTAISCID----RGESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALS 240 (1108)
T ss_dssp TTTTCCCSCSSCCSSCCCHHHHHHHHHHT----TTCCEEEECCSSSHHHHHHHHHHHHHHHT----TCEEEEEESSHHHH
T ss_pred CChhhhHHHHHhCCCCCCHHHHHHHHHHH----cCCCEEEECCCCCChHHHHHHHHHHHHhc----CCeEEEEcCcHHHH
Confidence 44444445555566689999999998864 58999999999999999999999988855 34899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++.++. .++.++|+.+. ...++|+|+||++|.+++.+. ...
T Consensus 241 ~Q~~~~l~~~~~----~VglltGd~~~----------------------------~~~~~IlV~Tpe~L~~~L~~~-~~~ 287 (1108)
T 3l9o_A 241 NQKYRELLAEFG----DVGLMTGDITI----------------------------NPDAGCLVMTTEILRSMLYRG-SEV 287 (1108)
T ss_dssp HHHHHHHHHHTS----SEEEECSSCBC----------------------------CCSCSEEEEEHHHHHHHHHHC-SSH
T ss_pred HHHHHHHHHHhC----CccEEeCcccc----------------------------CCCCCEEEeChHHHHHHHHcC-ccc
Confidence 999999999865 57778887652 245799999999999998874 345
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++|||||||++.+.+++..+..++..++ +..+++++||
T Consensus 288 l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~--------------------------------------~~~qvl~lSA 329 (1108)
T 3l9o_A 288 MREVAWVIFDEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSA 329 (1108)
T ss_dssp HHHEEEEEEETGGGTTSHHHHHHHHHHHHHSC--------------------------------------TTSEEEEEEC
T ss_pred cccCCEEEEhhhhhccccchHHHHHHHHHhcC--------------------------------------CCceEEEEcC
Confidence 77899999999999999999998888887764 2248899999
Q ss_pred EecCCch--hhhhcccCCCeeEeeCCccccCCcccceeEEe---------ccC---------------------------
Q 010196 275 TLTQDPN--KLAQLDLHHPLFLTTGETRYKLPERLESYKLI---------CES--------------------------- 316 (515)
Q Consensus 275 T~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~--------------------------- 316 (515)
|+++... .+.......|..+....... ..+..+... ...
T Consensus 330 Tipn~~e~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1108)
T 3l9o_A 330 TIPNAMEFAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 406 (1108)
T ss_dssp SCSSCHHHHHHHHHHTCSCEEEEEECCCS---SCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------
T ss_pred CCCCHHHHHHHHHhhcCCCeEEEecCCCc---ccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc
Confidence 9876533 33333333333332211110 001111100 000
Q ss_pred -------------------CCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCC-------------------
Q 010196 317 -------------------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL------------------- 358 (515)
Q Consensus 317 -------------------~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~------------------- 358 (515)
..+...++..+......++||||+++..|+.++..|...+..
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 486 (1108)
T 3l9o_A 407 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 486 (1108)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 111223444444556779999999999999999998653210
Q ss_pred -----------------ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCC--------
Q 010196 359 -----------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP-------- 413 (515)
Q Consensus 359 -----------------~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p-------- 413 (515)
...+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+++.|
T Consensus 487 ~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~ 566 (1108)
T 3l9o_A 487 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRW 566 (1108)
T ss_dssp HHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEE
T ss_pred chhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCcccCcccccc
Confidence 1127899999999999999999999999999999999999999999999987764
Q ss_pred CChhhhHHhhhhcccCC--CCccEEEEeech-hHHHHHHHHH
Q 010196 414 AYIKTYIHRAGRTARAG--QLGRCFTLLHKD-EVKRFKKLLQ 452 (515)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g--~~g~~~~~~~~~-d~~~~~~~~~ 452 (515)
.|+.+|+||+|||||.| ..|.|++++++. +...+.+++.
T Consensus 567 iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~ 608 (1108)
T 3l9o_A 567 VSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 608 (1108)
T ss_dssp CCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHH
T ss_pred CCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhc
Confidence 35667999999999999 568888888765 4444555544
No 25
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.8e-44 Score=382.84 Aligned_cols=337 Identities=23% Similarity=0.285 Sum_probs=252.7
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+.++++||.+|+|+|.++++.+. .+++++++||||||||+++.+++++.+.. +.+++|++|+++|+
T Consensus 10 l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~----~~~~~lv~apTGsGKT~~~~l~il~~~~~----~~~~l~i~P~r~La 81 (702)
T 2p6r_A 10 ISSYAVGILKEEGIEELFPPQAEAVEKVF----SGKNLLLAMPTAAGKTLLAEMAMVREAIK----GGKSLYVVPLRALA 81 (702)
T ss_dssp HHHHHHHHHHCC---CCCCCCHHHHHHHT----TCSCEEEECSSHHHHHHHHHHHHHHHHHT----TCCEEEEESSHHHH
T ss_pred cCHHHHHHHHhCCCCCCCHHHHHHHHHHh----CCCcEEEEcCCccHHHHHHHHHHHHHHHh----CCcEEEEeCcHHHH
Confidence 78999999999999999999999998854 48999999999999999999999988764 34899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++.+.. .+++++..+|+....+. ....++|+|+||+++..++.+. ...
T Consensus 82 ~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~------------------------~~~~~~Iiv~Tpe~l~~~l~~~-~~~ 135 (702)
T 2p6r_A 82 GEKYESFKKWEK-IGLRIGISTGDYESRDE------------------------HLGDCDIIVTTSEKADSLIRNR-ASW 135 (702)
T ss_dssp HHHHHHHTTTTT-TTCCEEEECSSCBCCSS------------------------CSTTCSEEEEEHHHHHHHHHTT-CSG
T ss_pred HHHHHHHHHHHh-cCCEEEEEeCCCCcchh------------------------hccCCCEEEECHHHHHHHHHcC-hhH
Confidence 999999965543 48899999998653211 1135799999999999988773 334
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
++++++||+||||.+.+++++..++.++..+.... +..+++++||
T Consensus 136 l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~-----------------------------------~~~~ii~lSA 180 (702)
T 2p6r_A 136 IKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN-----------------------------------KALRVIGLSA 180 (702)
T ss_dssp GGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHC-----------------------------------TTCEEEEEEC
T ss_pred HhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcC-----------------------------------cCceEEEECC
Confidence 77899999999999988778777777776653211 2348899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCccc--ceeEEeccCC-------CcHHHHHHHHHhcCCCeEEEEcCChhhH
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERL--ESYKLICESK-------LKPLYLVALLQSLGEEKCIVFTSSVEST 345 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-------~k~~~l~~~l~~~~~~~~lVf~~s~~~~ 345 (515)
|+++ ...+..+.. .+. +.......++.... .......... .....+...+. .++++||||++++.+
T Consensus 181 Tl~n-~~~~~~~l~-~~~-~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~ 255 (702)
T 2p6r_A 181 TAPN-VTEIAEWLD-ADY-YVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGA 255 (702)
T ss_dssp CCTT-HHHHHHHTT-CEE-EECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHH
T ss_pred CcCC-HHHHHHHhC-CCc-ccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHH
Confidence 9964 444444332 221 11111110100000 0000001111 13344444443 478999999999999
Q ss_pred HHHHHHHhhcCC---------------------------CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcccc
Q 010196 346 HRLCTLLNHFGE---------------------------LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRG 398 (515)
Q Consensus 346 ~~l~~~L~~~~~---------------------------~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~G 398 (515)
+.+++.|..... .+..+..+||++++.+|..+++.|++|..+|||||+++++|
T Consensus 256 ~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~G 335 (702)
T 2p6r_A 256 EKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAG 335 (702)
T ss_dssp HHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSS
T ss_pred HHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhcc
Confidence 999998875310 01357889999999999999999999999999999999999
Q ss_pred CCCCCCCEEEE----cc---CCCChhhhHHhhhhcccCCC--CccEEEEeechhHH
Q 010196 399 MDVEGVNNVVN----YD---KPAYIKTYIHRAGRTARAGQ--LGRCFTLLHKDEVK 445 (515)
Q Consensus 399 iDi~~v~~VI~----~~---~p~s~~~~~Qr~GR~gR~g~--~g~~~~~~~~~d~~ 445 (515)
+|+|++++||+ || .|.|..+|.||+|||||.|. .|.|++++++.+..
T Consensus 336 idip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~ 391 (702)
T 2p6r_A 336 VNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDRE 391 (702)
T ss_dssp SCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHH
T ss_pred CCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHH
Confidence 99999999999 65 78899999999999999984 69999999988743
No 26
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=4.1e-44 Score=391.33 Aligned_cols=356 Identities=20% Similarity=0.285 Sum_probs=260.6
Q ss_pred HHHHH-hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHH
Q 010196 40 KVALQ-NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 40 ~~~l~-~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~ 118 (515)
.+.+. .+||. | |+|.++++.++. |+|++++||||||||+ |++|++..+.. .++++||++||++|+.|++
T Consensus 47 ~~~~~~~~g~~-p-~iQ~~ai~~il~----g~dvlv~apTGSGKTl-~~lp~l~~~~~---~~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 47 VEFFRKCVGEP-R-AIQKMWAKRILR----KESFAATAPTGVGKTS-FGLAMSLFLAL---KGKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp HHHHHTTTCSC-C-HHHHHHHHHHHT----TCCEECCCCBTSCSHH-HHHHHHHHHHT---TSCCEEEEESCHHHHHHHH
T ss_pred HHHHHHhcCCC-H-HHHHHHHHHHHh----CCCEEEEcCCCCCHHH-HHHHHHHHHhh---cCCeEEEEeccHHHHHHHH
Confidence 34444 48998 9 999999998875 8999999999999998 88898887764 3568999999999999999
Q ss_pred HHHHHhccccCc----EEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 119 DVFAAIAPAVGL----SVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 119 ~~~~~~~~~~~~----~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
+.+++++...++ +++.++|+.+...+... ...+.. ++|+|+||++|.+++.+
T Consensus 117 ~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~------------------~~~l~~-~~IlV~TP~~L~~~l~~----- 172 (1054)
T 1gku_B 117 ETIRKYAEKAGVGTENLIGYYHGRIPKREKENF------------------MQNLRN-FKIVITTTQFLSKHYRE----- 172 (1054)
T ss_dssp HHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHH------------------HHSGGG-CSEEEEEHHHHHHCSTT-----
T ss_pred HHHHHHHhhcCCCccceEEEEeCCCChhhHHHH------------------HhhccC-CCEEEEcHHHHHHHHHH-----
Confidence 999999988888 89999999887664221 123444 79999999999998765
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
++++++||+||||++++ ++..+..++..+........ . ......+.+++||
T Consensus 173 L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~~~--------~-------------------~~~~~~q~~l~SA 223 (1054)
T 1gku_B 173 LGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDLKT--------K-------------------SWVGEARGCLMVS 223 (1054)
T ss_dssp SCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEETTT--------T-------------------EEEECCSSEEEEC
T ss_pred hccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhhhh--------h-------------------hcccCCceEEEEe
Confidence 55899999999999987 56666777665432110000 0 0012236799999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhh
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (515)
|++.. ..+....+..+..+........ ...+.+... ...+...+..++... ++++||||+++..++.+++.|..
T Consensus 224 T~t~~-~~~~~~~~~~~~~i~v~~~~~~-~~~i~~~~~---~~~k~~~L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~ 297 (1054)
T 1gku_B 224 TATAK-KGKKAELFRQLLNFDIGSSRIT-VRNVEDVAV---NDESISTLSSILEKL-GTGGIIYARTGEEAEEIYESLKN 297 (1054)
T ss_dssp CCCSC-CCTTHHHHHHHHCCCCSCCEEC-CCCEEEEEE---SCCCTTTTHHHHTTS-CSCEEEEESSHHHHHHHHHTTTT
T ss_pred cCCCc-hhHHHHHhhcceEEEccCcccC-cCCceEEEe---chhHHHHHHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhh
Confidence 99877 4433333333333322222211 122333333 355667777777765 57899999999999999999986
Q ss_pred cCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEe----cCCccccCCCCCC-CEEEEccCC----------------
Q 010196 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEGV-NNVVNYDKP---------------- 413 (515)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~----T~~~~~GiDi~~v-~~VI~~~~p---------------- 413 (515)
. +.+..+||++ ..+++.|++|+.+|||| |+++++|+|+|+| ++||++++|
T Consensus 298 ~----~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P~~~~~~~~~~~~~~~~ 368 (1054)
T 1gku_B 298 K----FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTIEDIDSLSPQM 368 (1054)
T ss_dssp S----SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCCEEEEECSCGGGSCHHH
T ss_pred c----cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCCcccccccccccChHHH
Confidence 4 6889999998 37889999999999999 9999999999995 999999999
Q ss_pred -------------------------------------------------------CChhhhHHhhhhcccCCCCc--cEE
Q 010196 414 -------------------------------------------------------AYIKTYIHRAGRTARAGQLG--RCF 436 (515)
Q Consensus 414 -------------------------------------------------------~s~~~~~Qr~GR~gR~g~~g--~~~ 436 (515)
.+..+|+||+||+||.|..| .++
T Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~yiQr~GRagR~g~~g~~~g~ 448 (1054)
T 1gku_B 369 VKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVREGEVIFPDLRTYIQGSGRTSRLFAGGLTKGA 448 (1054)
T ss_dssp HHHHHTTTSCHHHHHTTCTTTSSCHHHHHHHHHHHHTTSCCSCSSSEEETTEEEEECHHHHHHHHHTTCCEETTEECCEE
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccceeEeecceecCcHHHHhhhhchhhhccCCCCceEE
Confidence 78999999999999987775 588
Q ss_pred EEeechhHHHHHHHHHHhcCCCCCccCCChhhHhhhH
Q 010196 437 TLLHKDEVKRFKKLLQKADNDSCPIHSIPSSLIESLR 473 (515)
Q Consensus 437 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (515)
+|+..+|...+..+.+.+.........+..-..+.+.
T Consensus 449 ~~~~~~d~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~ 485 (1054)
T 1gku_B 449 SFLLEDDSELLSAFIERAKLYDIEFKSIDEVDFEKLS 485 (1054)
T ss_dssp EEEECSCHHHHHHHHHHHHTTSSCCCBCSCCCHHHHH
T ss_pred EEEEecCHHHHHHHHHHHhhccCccccCCcCCHHHHH
Confidence 8888888888888877766422333344433333333
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=2.8e-43 Score=361.61 Aligned_cols=357 Identities=19% Similarity=0.201 Sum_probs=251.5
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.+|| .|+|+|..+++.++. |+ |++|+||+|||++|.+|++..... +..++||+||++||.|.++++..+
T Consensus 79 ~lG~-~pt~VQ~~~ip~ll~----G~--Iaea~TGeGKTlaf~LP~~l~aL~----g~~vlVltptreLA~qd~e~~~~l 147 (844)
T 1tf5_A 79 VTGM-FPFKVQLMGGVALHD----GN--IAEMKTGEGKTLTSTLPVYLNALT----GKGVHVVTVNEYLASRDAEQMGKI 147 (844)
T ss_dssp HHSC-CCCHHHHHHHHHHHT----TS--EEECCTTSCHHHHHHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCcHHHHHhhHHHhC----CC--EEEccCCcHHHHHHHHHHHHHHHc----CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 4899 999999999988764 66 999999999999999999854333 347999999999999999999999
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcC-----cCCCCCcc
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINAT-----RGFTLEHL 198 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~-----~~~~~~~~ 198 (515)
...+++++++++|+.+...+.. ..+++|+|+||++| .+++... ..+.++.+
T Consensus 148 ~~~lgl~v~~i~gg~~~~~r~~-----------------------~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~ 204 (844)
T 1tf5_A 148 FEFLGLTVGLNLNSMSKDEKRE-----------------------AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPL 204 (844)
T ss_dssp HHHTTCCEEECCTTSCHHHHHH-----------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCC
T ss_pred HhhcCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCC
Confidence 9999999999999987654322 23579999999999 6665442 23557889
Q ss_pred eEEEEcchhHHH-HHH---------------HHhHHHHHHhhcccC---------cccccCC-----------ccccccc
Q 010196 199 CYLVVDETDRLL-REA---------------YQAWLPTVLQLTRSD---------NENRFSD-----------ASTFLPS 242 (515)
Q Consensus 199 ~~vViDEah~l~-~~~---------------~~~~~~~i~~~~~~~---------~~~~~~~-----------~~~~~~~ 242 (515)
.++|+||||+|+ +++ +...+..++..++.. ....+++ ...++..
T Consensus 205 ~~lVlDEaD~mLiDea~tplIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsa 284 (844)
T 1tf5_A 205 HFAVIDEVDSILIDEARTPLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDV 284 (844)
T ss_dssp CEEEEETHHHHHTTTTTCEEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSG
T ss_pred CEEEECchhhhhhhccccchhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCC
Confidence 999999999998 653 556677777776521 0000000 0000000
Q ss_pred cccc-hhhhh------------------------------ccccccCCCC------------CCCC--------------
Q 010196 243 AFGS-LKTIR------------------------------RCGVERGFKD------------KPYP-------------- 265 (515)
Q Consensus 243 ~~~~-~~~~~------------------------------~~~~~~~~~~------------~~~~-------------- 265 (515)
.... ...+. +....+.+.+ ...+
T Consensus 285 t~~~~~~~i~~al~A~~l~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~f 364 (844)
T 1tf5_A 285 KHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYF 364 (844)
T ss_dssp GGHHHHHHHHHHHHHHHTCCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHH
T ss_pred ccchhHHHHHHHHHHHHHhhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHH
Confidence 0000 00000 0000000000 0000
Q ss_pred --ceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCC
Q 010196 266 --RLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSS 341 (515)
Q Consensus 266 --~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s 341 (515)
......+|+|......++...+..+.+.+... . +....-....+......|...+...+.. ..+.++||||+|
T Consensus 365 r~y~kl~GmTGTa~te~~e~~~iY~l~vv~IPtn--~-p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s 441 (844)
T 1tf5_A 365 RMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTN--R-PVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVA 441 (844)
T ss_dssp TTSSEEEEEESCCGGGHHHHHHHHCCCEEECCCS--S-CCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESC
T ss_pred HHHhhhccCCcccchhHHHHHHHhCCceEEecCC--C-CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECC
Confidence 01346778887665555544443332222111 1 1111111223444556788888887764 356789999999
Q ss_pred hhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCC--------CCCEEEEccCC
Q 010196 342 VESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE--------GVNNVVNYDKP 413 (515)
Q Consensus 342 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~--------~v~~VI~~~~p 413 (515)
+..++.++..|...+ +++..+||++.+.+|..+.++|+.| .|+|||++++||+|++ ++.+||+|+.|
T Consensus 442 ~~~se~Ls~~L~~~g---i~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p 516 (844)
T 1tf5_A 442 VETSELISKLLKNKG---IPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERH 516 (844)
T ss_dssp HHHHHHHHHHHHTTT---CCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCC
T ss_pred HHHHHHHHHHHHHCC---CCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhhcCCcEEEEecCC
Confidence 999999999999876 8899999999888887666666655 7999999999999999 78899999999
Q ss_pred CChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 414 AYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 414 ~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
.|.+.|+||+||+||.|.+|.+++|++..|
T Consensus 517 ~s~r~y~hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 517 ESRRIDNQLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp SSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCHHHHHhhcCccccCCCCCeEEEEecHHH
Confidence 999999999999999999999999999876
No 28
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.3e-43 Score=380.86 Aligned_cols=342 Identities=18% Similarity=0.195 Sum_probs=206.0
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-CcccEEEEcccHHHHHHHHHHHHH
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
-+|+..|+|+|.++++.++. ++++++++|||+|||++|++|++..+...+. .+.++||++||++|+.|+.+.+++
T Consensus 243 ~~g~~~l~~~Q~~~i~~~l~----~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~ 318 (797)
T 4a2q_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (797)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred hcCCCCCCHHHHHHHHHHHh----CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 46888999999999998864 7999999999999999999999999877431 156899999999999999999999
Q ss_pred hccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEE
Q 010196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
+++..++++..++|+.+...... .+..+++|+|+||++|.+.+.......+.++++||+
T Consensus 319 ~~~~~~~~v~~~~g~~~~~~~~~---------------------~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iVi 377 (797)
T 4a2q_A 319 HFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (797)
T ss_dssp HHGGGTCCEEEECCC-----CHH---------------------HHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred hcccCCceEEEEeCCcchhhhHH---------------------HhhCCCCEEEEchHHHHHHHHhccccccccCCEEEE
Confidence 99888999999999986544322 233567999999999999988643326889999999
Q ss_pred cchhHHHHHHHH-hHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCc--
Q 010196 204 DETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-- 280 (515)
Q Consensus 204 DEah~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-- 280 (515)
||||++.+.+.. ..+..++...... ..+..+++++|||+....
T Consensus 378 DEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~lSATp~~~~~~ 423 (797)
T 4a2q_A 378 DECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAK 423 (797)
T ss_dssp TTGGGCSTTSHHHHHHHHHHHHHHTT----------------------------------CCCCCEEEEEESCCCCTTCC
T ss_pred ECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCCCeEEEEcCCccccccc
Confidence 999998765322 2222222211000 012347899999985321
Q ss_pred ------hhh---h------------------hcccCCCeeEe--eCCcc-cc---------------------------C
Q 010196 281 ------NKL---A------------------QLDLHHPLFLT--TGETR-YK---------------------------L 303 (515)
Q Consensus 281 ------~~~---~------------------~~~~~~~~~~~--~~~~~-~~---------------------------~ 303 (515)
..+ . ......|.... ..... .. .
T Consensus 424 ~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~ 503 (797)
T 4a2q_A 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIYSVDTLSQN 503 (797)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHHHHHHHHHHHHHHHHHhhHHhhhh
Confidence 000 0 00011111100 00000 00 0
Q ss_pred Cc---cc---cee-------------------------------------------------------------------
Q 010196 304 PE---RL---ESY------------------------------------------------------------------- 310 (515)
Q Consensus 304 ~~---~~---~~~------------------------------------------------------------------- 310 (515)
+. .. ..+
T Consensus 504 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (797)
T 4a2q_A 504 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 583 (797)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhccCc
Confidence 00 00 000
Q ss_pred ----------------------EEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCC-------
Q 010196 311 ----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (515)
Q Consensus 311 ----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~------- 357 (515)
........|...|..++.. ..+.++||||+++..++.+++.|.....
T Consensus 584 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~ 663 (797)
T 4a2q_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (797)
T ss_dssp CHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCE
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccce
Confidence 0000024456666666654 4578999999999999999999976411
Q ss_pred --CceeEEEccCccCHHHHHHHHHHHhc-CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCcc
Q 010196 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (515)
Q Consensus 358 --~~~~v~~~~~~~~~~~r~~~l~~f~~-g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 434 (515)
.+.....+||+|++.+|.++++.|++ |+++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. +.|.
T Consensus 664 ~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~-~~g~ 741 (797)
T 4a2q_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (797)
T ss_dssp EC----------------------------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC---------CCC
T ss_pred EEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCce
Confidence 23456677899999999999999999 999999999999999999999999999999999999999999 999 7899
Q ss_pred EEEEeechhHHHH
Q 010196 435 CFTLLHKDEVKRF 447 (515)
Q Consensus 435 ~~~~~~~~d~~~~ 447 (515)
|++|+++.+...-
T Consensus 742 ~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 742 CILVTSKTEVVEN 754 (797)
T ss_dssp EEEEECCHHHHHH
T ss_pred EEEEEeCCcHHHH
Confidence 9999998876443
No 29
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=3.2e-43 Score=383.74 Aligned_cols=335 Identities=18% Similarity=0.273 Sum_probs=245.3
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.+|| +|+|+|.++++.++. |+|++++||||||||++|+++++..+. .+.++||++||++|+.|+++.++++
T Consensus 74 ~~gf-~pt~iQ~~ai~~il~----g~dvlv~ApTGSGKTl~~l~~il~~~~----~~~~~Lil~PtreLa~Q~~~~l~~l 144 (1104)
T 4ddu_A 74 KFGK-DLTGYQRLWAKRIVQ----GKSFTMVAPTGVGKTTFGMMTALWLAR----KGKKSALVFPTVTLVKQTLERLQKL 144 (1104)
T ss_dssp HSSS-CCCHHHHHHHHHHTT----TCCEEECCSTTCCHHHHHHHHHHHHHT----TTCCEEEEESSHHHHHHHHHHHHTT
T ss_pred hcCC-CCCHHHHHHHHHHHc----CCCEEEEeCCCCcHHHHHHHHHHHHHh----cCCeEEEEechHHHHHHHHHHHHHh
Confidence 3788 699999999988764 899999999999999998888887763 3458999999999999999999998
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccC-CcEEEeCChHHHHHHhcCcCCCCCcceEEEE
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA-VDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
+ ..++++..++|+.+..+.... +..+..+ ++|+|+||++|.+++.. +.+.++++||+
T Consensus 145 ~-~~~i~v~~l~Gg~~~~er~~~------------------~~~l~~g~~~IlV~Tp~rL~~~l~~---l~~~~l~~lVi 202 (1104)
T 4ddu_A 145 A-DEKVKIFGFYSSMKKEEKEKF------------------EKSFEEDDYHILVFSTQFVSKNREK---LSQKRFDFVFV 202 (1104)
T ss_dssp S-CTTSCEEEECTTCCTTHHHHH------------------HHHHHTSCCSEEEEEHHHHHHSHHH---HHTSCCSEEEE
T ss_pred h-CCCCeEEEEeCCCCHHHHHHH------------------HHHHhCCCCCEEEECHHHHHHHHHh---hcccCcCEEEE
Confidence 7 668999999999886332111 1233444 89999999999888764 45678999999
Q ss_pred cchhHHHH-----------HHHHhH-HHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 204 DETDRLLR-----------EAYQAW-LPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 204 DEah~l~~-----------~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
||||++.. .+|... +..++..++.... .. .....+..++++
T Consensus 203 DEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~--~~-------------------------~~~~~~~~q~ll 255 (1104)
T 4ddu_A 203 DDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKI--YE-------------------------RPKNLKPGILVV 255 (1104)
T ss_dssp SCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSC--CC-------------------------CCSSCCCCEEEE
T ss_pred eCCCccccccccchhhhHhcCCCHHHHHHHHHhcccchh--hh-------------------------hhccCCCceEEE
Confidence 99987553 445445 6666665541100 00 000013348999
Q ss_pred EEEEe-cCCchhh-hhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHH
Q 010196 272 LSATL-TQDPNKL-AQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (515)
Q Consensus 272 ~SaT~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (515)
+|||+ +...... ....+. +...... .....+.+....+ .+...+..++... ++++||||+++..++.++
T Consensus 256 ~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~ 326 (1104)
T 4ddu_A 256 SSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELY 326 (1104)
T ss_dssp ECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHH
T ss_pred EcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHH
Confidence 99994 4443322 211111 1111111 1223344444433 5777778888774 589999999999999999
Q ss_pred HHHhhcCCCceeEE-EccCccCHHHHHHHHHHHhcCCceEEEe----cCCccccCCCCC-CCEEEEccCCC---------
Q 010196 350 TLLNHFGELRIKIK-EYSGLQRQSVRSKTLKAFREGKIQVLVS----SDAMTRGMDVEG-VNNVVNYDKPA--------- 414 (515)
Q Consensus 350 ~~L~~~~~~~~~v~-~~~~~~~~~~r~~~l~~f~~g~~~vLv~----T~~~~~GiDi~~-v~~VI~~~~p~--------- 414 (515)
..|...+ +.+. .+||. |.+ ++.|++|+.+|||| |+++++|+|+|+ |++||+||+|.
T Consensus 327 ~~L~~~g---~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~~~~Sle~~~ 397 (1104)
T 4ddu_A 327 EYLKRFK---FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSMRFSLELDK 397 (1104)
T ss_dssp HHHHHTT---CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCEEEEECSSSS
T ss_pred HHHHhCC---CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCCCCCCccccc
Confidence 9999866 7887 89983 555 99999999999999 999999999999 99999999998
Q ss_pred ---------------------------------------------------------------ChhhhHHhhhhcccCCC
Q 010196 415 ---------------------------------------------------------------YIKTYIHRAGRTARAGQ 431 (515)
Q Consensus 415 ---------------------------------------------------------------s~~~~~Qr~GR~gR~g~ 431 (515)
++.+|+||+|||||.|.
T Consensus 398 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~e~~~~~l~~~~~~~~i~~~~~~l~~~~~~~~~~~pd~~tYihr~GRtgR~~~ 477 (1104)
T 4ddu_A 398 APRFVLARVLKEMGLIKAQENPDVEELRKIAKEHLTQKEFVEKVKEMFRGVVVKDEDLELIIPDVYTYIQASGRSSRILN 477 (1104)
T ss_dssp CCHHHHHHHHHHHSSCSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCSSEEETTTTEEEEECHHHHHHHHHTTCCEET
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhccceEEecCCeeEEEecChhhhhcccCchhcccC
Confidence 67799999999999764
Q ss_pred Cc--cEEEEeechhHHHHHHHHHHhc
Q 010196 432 LG--RCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 432 ~g--~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.| .+++++..+|...++.+.+.+.
T Consensus 478 gg~~~Glsi~~~~d~~~~~~l~~~~~ 503 (1104)
T 4ddu_A 478 GVLVKGVSVIFEEDEEIFESLKTRLL 503 (1104)
T ss_dssp TEECCEEEEEECCCHHHHHHHHHHHH
T ss_pred CCcccceEEEEEecHHHHHHHHHHHh
Confidence 32 3444444466666777666553
No 30
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.3e-42 Score=355.42 Aligned_cols=324 Identities=24% Similarity=0.284 Sum_probs=238.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+|+|+|.+++..++. + ++++.+|||+|||+++++++...+.. .+.++||++|+++|+.||.+++++++...+
T Consensus 9 ~l~~~Q~~~i~~~~~----~-~~ll~~~tG~GKT~~~~~~~~~~~~~---~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKE----T-NCLIVLPTGLGKTLIAMMIAEYRLTK---YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGG----S-CEEEECCTTSCHHHHHHHHHHHHHHH---SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhh----C-CEEEEcCCCCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 699999999988765 4 99999999999999999999887762 345899999999999999999999975434
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
.++..++|+........ ....++|+|+||+.|...+.. ..+.+.++++||+||||++
T Consensus 81 ~~v~~~~g~~~~~~~~~----------------------~~~~~~ivv~T~~~l~~~~~~-~~~~~~~~~~vIiDEaH~~ 137 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK----------------------AWARAKVIVATPQTIENDLLA-GRISLEDVSLIVFDEAHRA 137 (494)
T ss_dssp GGEEEECSCSCHHHHHH----------------------HHHHCSEEEECHHHHHHHHHT-TSCCTTSCSEEEEETGGGC
T ss_pred hheEEeeCCcchhhhhh----------------------hccCCCEEEecHHHHHHHHhc-CCcchhhceEEEEECCccc
Confidence 58888998887654322 113469999999999998876 4456788999999999998
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhh---c
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ---L 286 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~---~ 286 (515)
.+......+...+.... +..+.+++|||+..+...+.. .
T Consensus 138 ~~~~~~~~~~~~~~~~~--------------------------------------~~~~~l~lTaTp~~~~~~~~~l~~~ 179 (494)
T 1wp9_A 138 VGNYAYVFIAREYKRQA--------------------------------------KNPLVIGLTASPGSTPEKIMEVINN 179 (494)
T ss_dssp STTCHHHHHHHHHHHHC--------------------------------------SSCCEEEEESCSCSSHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhcC--------------------------------------CCCeEEEEecCCCCCcHHHHHHHHh
Confidence 65432222222222111 122679999999754322211 1
Q ss_pred ccCCCeeEeeCCcc---------------ccCCcccc-------------------------------------------
Q 010196 287 DLHHPLFLTTGETR---------------YKLPERLE------------------------------------------- 308 (515)
Q Consensus 287 ~~~~~~~~~~~~~~---------------~~~~~~~~------------------------------------------- 308 (515)
.............. ...+....
T Consensus 180 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (494)
T 1wp9_A 180 LGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIIN 259 (494)
T ss_dssp TTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHH
T ss_pred cChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcchhHHHHHHHHHH
Confidence 10000000000000 00000000
Q ss_pred ---------------------------------------ee-----------------------------------EEec
Q 010196 309 ---------------------------------------SY-----------------------------------KLIC 314 (515)
Q Consensus 309 ---------------------------------------~~-----------------------------------~~~~ 314 (515)
.+ ....
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (494)
T 1wp9_A 260 EEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIG 339 (494)
T ss_dssp HHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTSHHHHHHHHHHHHHHHHT
T ss_pred HHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHhcC
Confidence 00 0000
Q ss_pred cCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccC--------ccCHHHHHHHHHHHh
Q 010196 315 ESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSG--------LQRQSVRSKTLKAFR 382 (515)
Q Consensus 315 ~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~--------~~~~~~r~~~l~~f~ 382 (515)
....|...+.+++.. ..+.++||||+++..++.+++.|...+ +.+..+|| +++..+|.++++.|+
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~ 416 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDG---IKAKRFVGQASKENDRGLSQREQKLILDEFA 416 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTT---CCEEEECCSSCC-------CCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcC---CCcEEEeccccccccccCCHHHHHHHHHHHh
Confidence 234466677777766 468899999999999999999999875 88999999 999999999999999
Q ss_pred cCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHH
Q 010196 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (515)
Q Consensus 383 ~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 446 (515)
+|+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+ |.++.++.+.+.+.
T Consensus 417 ~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~-g~~~~l~~~~t~ee 479 (494)
T 1wp9_A 417 RGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMP-GRVIILMAKGTRDE 479 (494)
T ss_dssp HTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCCC-SEEEEEEETTSHHH
T ss_pred cCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCCC-ceEEEEEecCCHHH
Confidence 9999999999999999999999999999999999999999999999997 99999999886543
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-43 Score=376.89 Aligned_cols=326 Identities=19% Similarity=0.219 Sum_probs=247.3
Q ss_pred HHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 43 LQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 43 l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
...++| +|+|+|.+|+..+.. +++++++||||+|||++|.++++..+.. +.+++|++||++|+.|+++.+.
T Consensus 80 ~~~~~f-~L~~~Q~eai~~l~~----g~~vLV~apTGSGKTlva~lai~~~l~~----g~rvL~l~PtkaLa~Q~~~~l~ 150 (1010)
T 2xgj_A 80 ARTYPF-TLDPFQDTAISCIDR----GESVLVSAHTSAGKTVVAEYAIAQSLKN----KQRVIYTSPIKALSNQKYRELL 150 (1010)
T ss_dssp SCCCSS-CCCHHHHHHHHHHHH----TCEEEEECCTTSCHHHHHHHHHHHHHHT----TCEEEEEESSHHHHHHHHHHHH
T ss_pred HHhCCC-CCCHHHHHHHHHHHc----CCCEEEECCCCCChHHHHHHHHHHHhcc----CCeEEEECChHHHHHHHHHHHH
Confidence 345677 499999999988754 8999999999999999999999987754 3489999999999999999999
Q ss_pred HhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEE
Q 010196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vV 202 (515)
+++. .++.++|+.+.. ..++|+|+||++|.+++.+. ...+.++++||
T Consensus 151 ~~~~----~vglltGd~~~~----------------------------~~~~IvV~Tpe~L~~~L~~~-~~~l~~l~lVV 197 (1010)
T 2xgj_A 151 AEFG----DVGLMTGDITIN----------------------------PDAGCLVMTTEILRSMLYRG-SEVMREVAWVI 197 (1010)
T ss_dssp HHHS----CEEEECSSCEEC----------------------------TTCSEEEEEHHHHHHHHHHT-CTTGGGEEEEE
T ss_pred HHhC----CEEEEeCCCccC----------------------------CCCCEEEEcHHHHHHHHHcC-cchhhcCCEEE
Confidence 8865 678888876521 34699999999999888763 35678999999
Q ss_pred EcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchh
Q 010196 203 VDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNK 282 (515)
Q Consensus 203 iDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~ 282 (515)
+||||++.+.+++..++.++..++ +..+++++|||+++. ..
T Consensus 198 iDEaH~l~d~~rg~~~e~il~~l~--------------------------------------~~~~il~LSATi~n~-~e 238 (1010)
T 2xgj_A 198 FDEVHYMRDKERGVVWEETIILLP--------------------------------------DKVRYVFLSATIPNA-ME 238 (1010)
T ss_dssp EETGGGGGCTTTHHHHHHHHHHSC--------------------------------------TTCEEEEEECCCTTH-HH
T ss_pred EechhhhcccchhHHHHHHHHhcC--------------------------------------CCCeEEEEcCCCCCH-HH
Confidence 999999988888877777776653 223889999998653 22
Q ss_pred hhhc---ccCCCeeEeeCCccccCCcccceeEEe---------ccC----------------------------------
Q 010196 283 LAQL---DLHHPLFLTTGETRYKLPERLESYKLI---------CES---------------------------------- 316 (515)
Q Consensus 283 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~---------------------------------- 316 (515)
+..+ ....+..+.....+. ..+.++... ...
T Consensus 239 ~a~~l~~~~~~~~~vi~~~~rp---~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~ 315 (1010)
T 2xgj_A 239 FAEWICKIHSQPCHIVYTNFRP---TPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKG 315 (1010)
T ss_dssp HHHHHHHHHTSCEEEEEECCCS---SCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHhhcCCCeEEEecCCCc---ccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccc
Confidence 2221 122232222211110 001111100 000
Q ss_pred ------------CCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCC--------------------------
Q 010196 317 ------------KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGEL-------------------------- 358 (515)
Q Consensus 317 ------------~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~-------------------------- 358 (515)
......+...+......++||||+++..|+.++..|...+..
T Consensus 316 ~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l 395 (1010)
T 2xgj_A 316 QTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDREL 395 (1010)
T ss_dssp -------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTC
T ss_pred cccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcc
Confidence 112233455555556679999999999999999998653210
Q ss_pred ----------ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE----ccC----CCChhhhH
Q 010196 359 ----------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----YDK----PAYIKTYI 420 (515)
Q Consensus 359 ----------~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~----~~~----p~s~~~~~ 420 (515)
...+..+||+|++.+|..+++.|++|.++|||||+++++|+|+|++++||+ ||. |.++.+|+
T Consensus 396 ~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~ 475 (1010)
T 2xgj_A 396 PQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 475 (1010)
T ss_dssp HHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHH
T ss_pred hhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHh
Confidence 123889999999999999999999999999999999999999999999999 998 88999999
Q ss_pred HhhhhcccCCCC--ccEEEEeech-hHHHHHHHHH
Q 010196 421 HRAGRTARAGQL--GRCFTLLHKD-EVKRFKKLLQ 452 (515)
Q Consensus 421 Qr~GR~gR~g~~--g~~~~~~~~~-d~~~~~~~~~ 452 (515)
||+||+||.|.+ |.|++++++. +...+.+++.
T Consensus 476 Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~ 510 (1010)
T 2xgj_A 476 QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVK 510 (1010)
T ss_dssp HHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHS
T ss_pred HhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHh
Confidence 999999999974 9999999865 5555666544
No 32
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.6e-42 Score=376.03 Aligned_cols=341 Identities=18% Similarity=0.202 Sum_probs=205.4
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc-CcccEEEEcccHHHHHHHHHHHHH
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV-RCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~-~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
-.|+.+|+|+|.++++.++. |+++++++|||+|||++|++|++..+..... .+.++||++||++|+.|+++.+++
T Consensus 243 l~~~~~~r~~Q~~ai~~il~----g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~ 318 (936)
T 4a2w_A 243 VYETKKARSYQIELAQPAIN----GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 318 (936)
T ss_dssp -----CCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHc----CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 35688999999999998864 8999999999999999999999988876421 156899999999999999999999
Q ss_pred hccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEE
Q 010196 124 IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 124 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
+++..++++..++|+.+...+.. .+..+++|+|+||++|.+.+.......+.++++||+
T Consensus 319 ~~~~~~~~v~~~~G~~~~~~~~~---------------------~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liVi 377 (936)
T 4a2w_A 319 HFERQGYSVQGISGENFSNVSVE---------------------KVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377 (936)
T ss_dssp HHHTTTCCEEEECCC-----CCH---------------------HHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEE
T ss_pred HhcccCceEEEEECCcchhhHHH---------------------HhccCCCEEEecHHHHHHHHHcCccccccCCCEEEE
Confidence 99888899999999986443221 222456999999999999988744336788999999
Q ss_pred cchhHHHHHHH-HhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCch-
Q 010196 204 DETDRLLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPN- 281 (515)
Q Consensus 204 DEah~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~- 281 (515)
||||++...+. ...+..++...... ..+..+++++|||+.....
T Consensus 378 DEaH~~~~~~~~~~i~~~~~~~~~~~----------------------------------~~~~~~~l~LSATp~~~~~~ 423 (936)
T 4a2w_A 378 DECHNTTGNHPYNVLMTRYLEQKFNS----------------------------------ASQLPQILGLTASVGVGNAK 423 (936)
T ss_dssp ETGGGCSTTCHHHHHHHHHHHHHHTT----------------------------------CSCCCEEEEEESCCCCTTCC
T ss_pred ECccccCCCccHHHHHHHHHHHhhcc----------------------------------CCCcCeEEEecCCcccccch
Confidence 99999876532 22222222211100 0123478999999853210
Q ss_pred h-------hhh---------------------cccCCCeeEeeCCcc-cc-----------------------------C
Q 010196 282 K-------LAQ---------------------LDLHHPLFLTTGETR-YK-----------------------------L 303 (515)
Q Consensus 282 ~-------~~~---------------------~~~~~~~~~~~~~~~-~~-----------------------------~ 303 (515)
. +.. .....|......... .. .
T Consensus 424 ~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~ 503 (936)
T 4a2w_A 424 NIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIISNLMSETEALMRTIAYVDTLSQN 503 (936)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHHHHHHHHHHHHHHHC---------
T ss_pred hHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 0 000 011111111100000 00 0
Q ss_pred Ccc---c-------------------------------------------------------------cee---------
Q 010196 304 PER---L-------------------------------------------------------------ESY--------- 310 (515)
Q Consensus 304 ~~~---~-------------------------------------------------------------~~~--------- 310 (515)
+.. . ..+
T Consensus 504 ~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~ 583 (936)
T 4a2w_A 504 SKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISEDARIIDALSYLTEFFTNVKNGPY 583 (936)
T ss_dssp ---CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhccC
Confidence 000 0 000
Q ss_pred ----------------------EEeccCCCcHHHHHHHHHh----cCCCeEEEEcCChhhHHHHHHHHhhcCC-------
Q 010196 311 ----------------------KLICESKLKPLYLVALLQS----LGEEKCIVFTSSVESTHRLCTLLNHFGE------- 357 (515)
Q Consensus 311 ----------------------~~~~~~~~k~~~l~~~l~~----~~~~~~lVf~~s~~~~~~l~~~L~~~~~------- 357 (515)
........|...|..++.. ..+.++||||+++..++.+++.|.....
T Consensus 584 ~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~ 663 (936)
T 4a2w_A 584 TELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPG 663 (936)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCE
T ss_pred CHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCcccccccee
Confidence 0000024456666777765 3568999999999999999999987511
Q ss_pred --CceeEEEccCccCHHHHHHHHHHHhc-CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCcc
Q 010196 358 --LRIKIKEYSGLQRQSVRSKTLKAFRE-GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGR 434 (515)
Q Consensus 358 --~~~~v~~~~~~~~~~~r~~~l~~f~~-g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~ 434 (515)
.+.....+||+|++.+|.++++.|++ |+++|||||+++++|||+|++++||+||+|+|+..|+||+|| ||. ..|.
T Consensus 664 ~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~-~~g~ 741 (936)
T 4a2w_A 664 VLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA-AGSK 741 (936)
T ss_dssp EC----------------------------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC---------CCC
T ss_pred EEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC-CCCE
Confidence 12455667899999999999999999 999999999999999999999999999999999999999999 999 7899
Q ss_pred EEEEeechhHHH
Q 010196 435 CFTLLHKDEVKR 446 (515)
Q Consensus 435 ~~~~~~~~d~~~ 446 (515)
++++++..+...
T Consensus 742 vi~Li~~~t~ee 753 (936)
T 4a2w_A 742 CILVTSKTEVVE 753 (936)
T ss_dssp EEEEESCHHHHH
T ss_pred EEEEEeCCCHHH
Confidence 999998876543
No 33
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.8e-42 Score=363.31 Aligned_cols=329 Identities=17% Similarity=0.219 Sum_probs=240.0
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCC--CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFE--RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~--~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
-.+.+.+.+..++| +|+++|.++++.+...+..+ .+++++||||||||++|++|++..+..+ .+++|++||++
T Consensus 354 ~~~~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g----~qvlvlaPtr~ 428 (780)
T 1gm5_A 354 EGKLAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG----FQTAFMVPTSI 428 (780)
T ss_dssp CTHHHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT----SCEEEECSCHH
T ss_pred chHHHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcC----CeEEEEeCcHH
Confidence 34566777788999 89999999999887643333 5899999999999999999999888653 48999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcCc
Q 010196 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINATR 191 (515)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~~ 191 (515)
|+.|+++.+++++...++++..++|+.+..+... .+..+.. .++|+|+||+.|.+
T Consensus 429 La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~------------------~~~~l~~g~~~IvVgT~~ll~~------ 484 (780)
T 1gm5_A 429 LAIQHYRRTVESFSKFNIHVALLIGATTPSEKEK------------------IKSGLRNGQIDVVIGTHALIQE------ 484 (780)
T ss_dssp HHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHH------------------HHHHHHSSCCCEEEECTTHHHH------
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHhh------
Confidence 9999999999999888999999999988665422 2223334 48999999998754
Q ss_pred CCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 192 GFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 192 ~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
.+.+.++++||+||+|++..... ..+. ......++++
T Consensus 485 ~~~~~~l~lVVIDEaHr~g~~qr--------~~l~-----------------------------------~~~~~~~vL~ 521 (780)
T 1gm5_A 485 DVHFKNLGLVIIDEQHRFGVKQR--------EALM-----------------------------------NKGKMVDTLV 521 (780)
T ss_dssp CCCCSCCCEEEEESCCCC-------------CCCC-----------------------------------SSSSCCCEEE
T ss_pred hhhccCCceEEecccchhhHHHH--------HHHH-----------------------------------HhCCCCCEEE
Confidence 24577899999999998621110 0000 0002247899
Q ss_pred EEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCChh------
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSVE------ 343 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~~------ 343 (515)
+|||+.............+...+...... ...+. .......+...+...+.. ..+.+++|||++++
T Consensus 522 mSATp~p~tl~~~~~g~~~~s~i~~~p~~---r~~i~---~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~ 595 (780)
T 1gm5_A 522 MSATPIPRSMALAFYGDLDVTVIDEMPPG---RKEVQ---TMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLN 595 (780)
T ss_dssp EESSCCCHHHHHHHTCCSSCEEECCCCSS---CCCCE---ECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC-------
T ss_pred EeCCCCHHHHHHHHhCCcceeeeeccCCC---CcceE---EEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhh
Confidence 99998665443332221122222111100 01111 112223344455555543 24678999999764
Q ss_pred --hHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCC-ChhhhH
Q 010196 344 --STHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPA-YIKTYI 420 (515)
Q Consensus 344 --~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~-s~~~~~ 420 (515)
.++.+++.|....-.+..+..+||+|++.+|..+++.|++|+.+|||||+++++|+|+|++++||+++.|. +...|.
T Consensus 596 ~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~ 675 (780)
T 1gm5_A 596 VKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLH 675 (780)
T ss_dssp -CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHH
Confidence 46777887876111247899999999999999999999999999999999999999999999999999986 688899
Q ss_pred HhhhhcccCCCCccEEEEeec
Q 010196 421 HRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 421 Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
||+||+||.|+.|.|++++++
T Consensus 676 Qr~GRaGR~g~~g~~ill~~~ 696 (780)
T 1gm5_A 676 QLRGRVGRGGQEAYCFLVVGD 696 (780)
T ss_dssp HHHHTSCCSSTTCEEECCCCS
T ss_pred HHhcccCcCCCCCEEEEEECC
Confidence 999999999999999999974
No 34
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=6.6e-42 Score=385.91 Aligned_cols=382 Identities=19% Similarity=0.152 Sum_probs=273.0
Q ss_pred cCCccCCCCCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 8 SMPVLPWMRSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
++.++.......+...+.++..-....|++...+++...+|..++|+|.++++.++. .++|++++||||||||++|.
T Consensus 884 ~~~~~~~p~~~~~~t~lldl~plp~s~L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---~~~nvlv~APTGSGKTliae 960 (1724)
T 4f92_B 884 SFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESLYQDKFPFFNPIQTQVFNTVYN---SDDNVFVGAPTGSGKTICAE 960 (1724)
T ss_dssp ECTTCCCCCCCCCCCCCCCCCCCBGGGSCCHHHHTTTTTTCSBCCHHHHHHHHHHHS---CCSCEEEECCTTSCCHHHHH
T ss_pred ccccccCCCCCCCCCccccCCCCCcccccCHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCCcEEEEeCCCCCchHHHH
Confidence 444444444444444444444333334777888888888999999999999998864 47899999999999999999
Q ss_pred HHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH-hccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHH
Q 010196 88 LPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA-IAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVL 166 (515)
Q Consensus 88 ~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (515)
+|+++.+.+. ++.+++|++|+++|+.|.++.+++ +.+..+++|+.++|+...+...
T Consensus 961 lail~~l~~~--~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~--------------------- 1017 (1724)
T 4f92_B 961 FAILRMLLQS--SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKL--------------------- 1017 (1724)
T ss_dssp HHHHHHHHHC--TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHH---------------------
T ss_pred HHHHHHHHhC--CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhh---------------------
Confidence 9999999874 345899999999999999999976 5566789999999987644321
Q ss_pred HhhccCCcEEEeCChHHHHHHhcCcCC-CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCcccccccccc
Q 010196 167 QELQSAVDILVATPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFG 245 (515)
Q Consensus 167 ~~l~~~~~Ivv~Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 245 (515)
...++|+||||+++..++++.... .++++++||+||+|.+.+ ..+..++.++..+.....
T Consensus 1018 ---~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~~i~~--------------- 1078 (1724)
T 4f92_B 1018 ---LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMRYISS--------------- 1078 (1724)
T ss_dssp ---HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHHHHHH---------------
T ss_pred ---cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHHHHHh---------------
Confidence 234699999999997777653322 367899999999998755 466666666654421100
Q ss_pred chhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhccc-CCCeeEeeCCccccCCcccceeEEeccCCCcH----
Q 010196 246 SLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDL-HHPLFLTTGETRYKLPERLESYKLICESKLKP---- 320 (515)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~---- 320 (515)
...+..+++++|||+++ ..+++.+.. .............+. .++.+..........
T Consensus 1079 ----------------~~~~~~riI~lSATl~N-~~dla~WL~~~~~~~~~~~~~~RPv--pL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1079 ----------------QIERPIRIVALSSSLSN-AKDVAHWLGCSATSTFNFHPNVRPV--PLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp ----------------TTSSCCEEEEEESCBTT-HHHHHHHHTCCSTTEEECCGGGCSS--CEEEEEEEECCCSHHHHHH
T ss_pred ----------------hcCCCceEEEEeCCCCC-HHHHHHHhCCCCCCeEEeCCCCCCC--CeEEEEEeccCCCchhhhh
Confidence 00133589999999964 445444432 222222222221122 222222211211111
Q ss_pred ---HHHHHHH-HhcCCCeEEEEcCChhhHHHHHHHHhhcC-------------------------------CCceeEEEc
Q 010196 321 ---LYLVALL-QSLGEEKCIVFTSSVESTHRLCTLLNHFG-------------------------------ELRIKIKEY 365 (515)
Q Consensus 321 ---~~l~~~l-~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-------------------------------~~~~~v~~~ 365 (515)
..+...+ ....++++||||+|++.|+.++..|.... ....++..+
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 1222333 34467899999999999998887763310 012368899
Q ss_pred cCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE----c------cCCCChhhhHHhhhhcccCCC--Cc
Q 010196 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN----Y------DKPAYIKTYIHRAGRTARAGQ--LG 433 (515)
Q Consensus 366 ~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~----~------~~p~s~~~~~Qr~GR~gR~g~--~g 433 (515)
|++|++.+|..+++.|++|.++|||||+++++|||+|...+||. | ..|.++.+|+||+|||||.|. .|
T Consensus 1220 HagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d~~G 1299 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQDDEG 1299 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTCSCE
T ss_pred CCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCCCce
Confidence 99999999999999999999999999999999999999888883 2 235678999999999999997 49
Q ss_pred cEEEEeechhHHHHHHHHHH
Q 010196 434 RCFTLLHKDEVKRFKKLLQK 453 (515)
Q Consensus 434 ~~~~~~~~~d~~~~~~~~~~ 453 (515)
.|++++.+.+...+++++..
T Consensus 1300 ~avll~~~~~~~~~~~ll~~ 1319 (1724)
T 4f92_B 1300 RCVIMCQGSKKDFFKKFLYE 1319 (1724)
T ss_dssp EEEEEEEGGGHHHHHHHTTS
T ss_pred EEEEEecchHHHHHHHHhCC
Confidence 99999999998888887654
No 35
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.3e-41 Score=366.21 Aligned_cols=328 Identities=17% Similarity=0.176 Sum_probs=241.3
Q ss_pred hCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 45 NMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 45 ~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.++| +|+|+|.++++.+.. |+++++.||||+|||++|++++...+.. +.+++|++|+++|+.|+++.++++
T Consensus 35 ~~~f-~l~~~Q~~aI~~il~----g~~vlv~apTGsGKTlv~~~~i~~~~~~----g~~vlvl~PtraLa~Q~~~~l~~~ 105 (997)
T 4a4z_A 35 SWPF-ELDTFQKEAVYHLEQ----GDSVFVAAHTSAGKTVVAEYAIAMAHRN----MTKTIYTSPIKALSNQKFRDFKET 105 (997)
T ss_dssp CCSS-CCCHHHHHHHHHHHT----TCEEEEECCTTSCSHHHHHHHHHHHHHT----TCEEEEEESCGGGHHHHHHHHHTT
T ss_pred hCCC-CCCHHHHHHHHHHHc----CCCEEEEECCCCcHHHHHHHHHHHHHhc----CCeEEEEeCCHHHHHHHHHHHHHH
Confidence 4577 599999999988764 8999999999999999999988876654 348999999999999999999987
Q ss_pred ccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEc
Q 010196 125 APAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (515)
Q Consensus 125 ~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (515)
+. +++++.++|+.+. ...++|+|+||++|.+.+... ...+.++++||+|
T Consensus 106 ~~--~~~v~~l~G~~~~----------------------------~~~~~IlV~Tpe~L~~~l~~~-~~~l~~l~lvViD 154 (997)
T 4a4z_A 106 FD--DVNIGLITGDVQI----------------------------NPDANCLIMTTEILRSMLYRG-ADLIRDVEFVIFD 154 (997)
T ss_dssp C----CCEEEECSSCEE----------------------------CTTSSEEEEEHHHHHHHHHHT-CSGGGGEEEEEEC
T ss_pred cC--CCeEEEEeCCCcc----------------------------CCCCCEEEECHHHHHHHHHhC-chhhcCCCEEEEE
Confidence 64 5788889988652 234699999999999988763 3457889999999
Q ss_pred chhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhh
Q 010196 205 ETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLA 284 (515)
Q Consensus 205 Eah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~ 284 (515)
|||++.+.+++..+..++..++ +..+++++|||+++.. .+.
T Consensus 155 EaH~l~d~~~g~~~e~ii~~l~--------------------------------------~~v~iIlLSAT~~n~~-ef~ 195 (997)
T 4a4z_A 155 EVHYVNDQDRGVVWEEVIIMLP--------------------------------------QHVKFILLSATVPNTY-EFA 195 (997)
T ss_dssp CTTCCCTTCTTCCHHHHHHHSC--------------------------------------TTCEEEEEECCCTTHH-HHH
T ss_pred CcccccccchHHHHHHHHHhcc--------------------------------------cCCCEEEEcCCCCChH-HHH
Confidence 9999999888888888877654 2348899999986432 222
Q ss_pred hccc---CCCeeE-eeCCccccCC--------------------------------------------------------
Q 010196 285 QLDL---HHPLFL-TTGETRYKLP-------------------------------------------------------- 304 (515)
Q Consensus 285 ~~~~---~~~~~~-~~~~~~~~~~-------------------------------------------------------- 304 (515)
.+.. ..+..+ .......++.
T Consensus 196 ~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (997)
T 4a4z_A 196 NWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGSTARGGR 275 (997)
T ss_dssp HHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC------------------------
T ss_pred HHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhcccccccccccccccccccccccc
Confidence 2110 011111 1000000000
Q ss_pred ---------------------------------cccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHH
Q 010196 305 ---------------------------------ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTL 351 (515)
Q Consensus 305 ---------------------------------~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~ 351 (515)
.....+........+...+...+......++||||++++.|+.++..
T Consensus 276 ~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~ 355 (997)
T 4a4z_A 276 GGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCEEYADW 355 (997)
T ss_dssp -----------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHH
Confidence 00000011112233455677777777778999999999999999999
Q ss_pred HhhcCCC------------------------------------ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc
Q 010196 352 LNHFGEL------------------------------------RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM 395 (515)
Q Consensus 352 L~~~~~~------------------------------------~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~ 395 (515)
|...+-. ...+..+||+|++.+|..+++.|++|..+|||||+++
T Consensus 356 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~G~~kVLvAT~~~ 435 (997)
T 4a4z_A 356 LEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSKGFIKVLFATETF 435 (997)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTCCSEEEECTHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHCCCCcEEEEchHh
Confidence 9664310 1257899999999999999999999999999999999
Q ss_pred cccCCCCCCCEEEEccCCC---------ChhhhHHhhhhcccCCC--CccEEEEe--echhHHHHHHHHH
Q 010196 396 TRGMDVEGVNNVVNYDKPA---------YIKTYIHRAGRTARAGQ--LGRCFTLL--HKDEVKRFKKLLQ 452 (515)
Q Consensus 396 ~~GiDi~~v~~VI~~~~p~---------s~~~~~Qr~GR~gR~g~--~g~~~~~~--~~~d~~~~~~~~~ 452 (515)
++|+|+|+ ..||+++.|+ +..+|+||+|||||.|. .|.|++++ .+.+...++.++.
T Consensus 436 a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i~ 504 (997)
T 4a4z_A 436 AMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM 504 (997)
T ss_dssp HHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHHH
T ss_pred hCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHhc
Confidence 99999999 5555555554 89999999999999984 47777777 3345556665544
No 36
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=2.2e-41 Score=346.47 Aligned_cols=354 Identities=17% Similarity=0.135 Sum_probs=225.2
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|. .|+|+|..+++.++. |+ +++++||+|||++|++|++..... +..++|++||++||.|+++++..+.
T Consensus 71 lg~-~p~~VQ~~~i~~ll~----G~--Iaem~TGsGKTlaf~LP~l~~~l~----g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNE----RC--IAEMRTGEGKTLTATLPAYLNALT----GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHS----SE--EEECCTTSCHHHHHHHHHHHHHTT----SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccC----Ce--eeeecCCchHHHHHHHHHHHHHHc----CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 575 899999999987754 65 999999999999999999865443 3479999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+++++++++|+.+...+. +..+++|+||||++| ++++.... .+.++++.
T Consensus 140 ~~lgl~v~~i~GG~~~~~r~-----------------------~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~ 196 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPAKR-----------------------EAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLH 196 (853)
T ss_dssp HHTTCCEEECCTTCCHHHHH-----------------------HHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCC
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCc
Confidence 99999999999998754321 223579999999999 78876532 24568899
Q ss_pred EEEEcchhHHH-HHH---------------HHhHHHHHHhhcccCcc---------cccCCccccccccc--cchhhhhc
Q 010196 200 YLVVDETDRLL-REA---------------YQAWLPTVLQLTRSDNE---------NRFSDASTFLPSAF--GSLKTIRR 252 (515)
Q Consensus 200 ~vViDEah~l~-~~~---------------~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~ 252 (515)
++|+||||+|+ +.+ +...+..++..++.... ..+.-......-.+ .....+..
T Consensus 197 ~lVlDEaD~mLiD~a~tpLIiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~ 276 (853)
T 2fsf_A 197 YALVDEVDSILIDEARTPLIISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEE 276 (853)
T ss_dssp EEEESCHHHHTTTTTTCEEEEEEC--------------------------------------------------------
T ss_pred EEEECchHHHHHhcCcccccccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHH
Confidence 99999999998 432 34455555555532100 00000000000000 00000000
Q ss_pred cccccCCCCCCCCceeeEEEEEEecCCchhhh-----hc---------------------------------ccCCC---
Q 010196 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLA-----QL---------------------------------DLHHP--- 291 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~-----~~---------------------------------~~~~~--- 291 (515)
.+.....-.-...++|||.+.....+. .. .++.+
T Consensus 277 -----~l~~~~l~~~~~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaiea 351 (853)
T 2fsf_A 277 -----LLVKEGIMDEGESLYSPANIMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEA 351 (853)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----HHHhCCcccccccccCcccchHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHh
Confidence 000000000000145555432111000 00 00000
Q ss_pred -eeEeeCCc----------------------------------------------cccCCcccceeEEeccCCCcHHHHH
Q 010196 292 -LFLTTGET----------------------------------------------RYKLPERLESYKLICESKLKPLYLV 324 (515)
Q Consensus 292 -~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~k~~~l~ 324 (515)
..+..... ..+....-....+......|...+.
T Consensus 352 ke~v~I~~e~~tla~It~qnyfr~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~ 431 (853)
T 2fsf_A 352 KEGVQIQNENQTLASITFQNYFRLYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAII 431 (853)
T ss_dssp -----CCCCCEEEEEEEHHHHHTTSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHH
T ss_pred cccceecccccccceeehHHHHhhhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHH
Confidence 00000000 0000000011123345566788888
Q ss_pred HHHHh--cCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCC
Q 010196 325 ALLQS--LGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVE 402 (515)
Q Consensus 325 ~~l~~--~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~ 402 (515)
..+.. ..+.++||||+|+..++.+++.|...+ +++..+||++.+.++..+.++|+.| .|+|||++++||+||+
T Consensus 432 ~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~g---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~ 506 (853)
T 2fsf_A 432 EDIKERTAKGQPVLVGTISIEKSELVSNELTKAG---IKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIV 506 (853)
T ss_dssp HHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHTT---CCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCC
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCcc
Confidence 87754 356799999999999999999999877 8999999999888888888889888 7999999999999999
Q ss_pred CC-------------------------------------CEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechh
Q 010196 403 GV-------------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDE 443 (515)
Q Consensus 403 ~v-------------------------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d 443 (515)
.. .+||+++.|.|.+.|.||+||+||.|.+|.+++|++..|
T Consensus 507 l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTGRqGd~G~s~~fls~eD 584 (853)
T 2fsf_A 507 LGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSGRQGDAGSSRFYLSMED 584 (853)
T ss_dssp TTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEETTS
T ss_pred CCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccccCCCCeeEEEEecccH
Confidence 64 599999999999999999999999999999999999877
No 37
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=6.5e-40 Score=335.93 Aligned_cols=357 Identities=18% Similarity=0.157 Sum_probs=253.3
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|+ .|+++|..+++.++. |+ |++++||+|||++|.+|++..... +..++||+||++||.|.++++..+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~----G~--Iaem~TGeGKTLa~~LP~~l~aL~----g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHL----GN--VAEMKTGEGKTLTCVLPAYLNALA----GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHT----TE--EEECCTTSCHHHHTHHHHHHHHTT----TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhc----CC--EEEecCCCccHHHHHHHHHHHHHh----CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 788 999999999988754 65 999999999999999999754443 2379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCCcce
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLEHLC 199 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~~~~ 199 (515)
..+++++++++|+.+...+.. ..+++|+|+||++| ++++...- .+.++.+.
T Consensus 177 ~~lGLsv~~i~gg~~~~~r~~-----------------------~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~ 233 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPDERRV-----------------------AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHH 233 (922)
T ss_dssp HHTTCCEEECCTTCCHHHHHH-----------------------HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCC
T ss_pred hhcCCeEEEEeCCCCHHHHHH-----------------------hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCC
Confidence 999999999999987543321 22469999999999 77776532 35577899
Q ss_pred EEEEcchhHHHH----------------HHHHhHHHHHHhhcccC---------ccc------------------ccCCc
Q 010196 200 YLVVDETDRLLR----------------EAYQAWLPTVLQLTRSD---------NEN------------------RFSDA 236 (515)
Q Consensus 200 ~vViDEah~l~~----------------~~~~~~~~~i~~~~~~~---------~~~------------------~~~~~ 236 (515)
++|+||||+|+. .++...+..++..++.. ... .++..
T Consensus 234 ~lIVDEaDsmLiDeartPLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat 313 (922)
T 1nkt_A 234 YAIVDEVDSILIDEARTPLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAA 313 (922)
T ss_dssp EEEETTHHHHHTTGGGSCEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCST
T ss_pred EEEEeChHHHHHhcCccceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCc
Confidence 999999999983 35777788888777521 110 11110
Q ss_pred cccccccccc-hhh---hh--------------------ccccccCCC------------CCCC----------------
Q 010196 237 STFLPSAFGS-LKT---IR--------------------RCGVERGFK------------DKPY---------------- 264 (515)
Q Consensus 237 ~~~~~~~~~~-~~~---~~--------------------~~~~~~~~~------------~~~~---------------- 264 (515)
...+...... +.. .. +....+.+. -...
T Consensus 314 ~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr 393 (922)
T 1nkt_A 314 NSPLVSYLNNALKAKELFSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFR 393 (922)
T ss_dssp TCCHHHHHHHHHHHHHHCCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHT
T ss_pred chhHHHHHHHHHHHHHHhhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHH
Confidence 0000000000 000 00 000000000 0000
Q ss_pred CceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHh--cCCCeEEEEcCCh
Q 010196 265 PRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQS--LGEEKCIVFTSSV 342 (515)
Q Consensus 265 ~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~--~~~~~~lVf~~s~ 342 (515)
-.-...+||+|......++...+..+.+.+.. .. +....-....+......|...+...+.. ..+.++||||+|+
T Consensus 394 ~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~IPt--n~-p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Si 470 (922)
T 1nkt_A 394 LYDKLAGMTGTAQTEAAELHEIYKLGVVSIPT--NM-PMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSV 470 (922)
T ss_dssp TSSEEEEEESCCGGGHHHHHHHHCCEEEECCC--SS-CCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred hhhhhhccccCchhHHHHHHHHhCCCeEEeCC--CC-CcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCH
Confidence 00145678888766555555444322222222 11 1111112223444556788888887754 3567999999999
Q ss_pred hhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCC------------------
Q 010196 343 ESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGV------------------ 404 (515)
Q Consensus 343 ~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v------------------ 404 (515)
..++.+++.|...+ +++..+||++.+.++..+.++|+.| .|+|||++++||+||+..
T Consensus 471 e~sE~Ls~~L~~~G---i~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~ 545 (922)
T 1nkt_A 471 ERSEYLSRQFTKRR---IPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDP 545 (922)
T ss_dssp HHHHHHHHHHHHTT---CCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHCC---CCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccc
Confidence 99999999999877 8999999999888887778888877 799999999999999975
Q ss_pred ----------------------------------CEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhH
Q 010196 405 ----------------------------------NNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (515)
Q Consensus 405 ----------------------------------~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~ 444 (515)
.+||+++.|.|.+.|.||+||+||.|.+|.+++|++..|.
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~pes~riy~qr~GRTGRqGdpG~s~fflSleD~ 619 (922)
T 1nkt_A 546 VETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTERHESRRIDNQLRGRSGRQGDPGESRFYLSLGDE 619 (922)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEEEEETTSH
T ss_pred cccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccCCCCHHHHHHHhcccccCCCCeeEEEEechhHH
Confidence 4999999999999999999999999999999999998764
No 38
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=1.7e-40 Score=364.82 Aligned_cols=330 Identities=17% Similarity=0.185 Sum_probs=246.2
Q ss_pred CCHHHHHHH-HhCCCCCcchhhHHHHHHHhCCCCCCC--CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 35 LDPRLKVAL-QNMGISSLFPVQVAVWQETIGPGLFER--DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 35 l~~~l~~~l-~~~~~~~~~~~Q~~a~~~~~~~~~~~~--~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
+++...+.+ ..++| +++|+|.+|++.++..+.+++ |+++++|||+|||++|+.+++..+.. +.+++|++||+
T Consensus 588 ~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~----g~~vlvlvPt~ 662 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN----HKQVAVLVPTT 662 (1151)
T ss_dssp CCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT----TCEEEEECSSH
T ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh----CCeEEEEechH
Confidence 455555555 45788 479999999998876444455 99999999999999999988877654 34899999999
Q ss_pred HHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEeCChHHHHHHhcC
Q 010196 112 DLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVATPGRLMDHINAT 190 (515)
Q Consensus 112 ~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~Tp~~l~~~l~~~ 190 (515)
+|+.|+++.+++++...++++..+.+..+..+... .+..+.. .++|+|+||+.+.
T Consensus 663 ~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~------------------~~~~l~~g~~dIvV~T~~ll~------ 718 (1151)
T 2eyq_A 663 LLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQ------------------ILAEVAEGKIDILIGTHKLLQ------ 718 (1151)
T ss_dssp HHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHH------------------HHHHHHTTCCSEEEECTHHHH------
T ss_pred HHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHH------------------HHHHHhcCCCCEEEECHHHHh------
Confidence 99999999999998877889999888766554422 1223334 4899999998663
Q ss_pred cCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 191 RGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 191 ~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
..+.+.++++||+||||++... ....+..+. +..+++
T Consensus 719 ~~~~~~~l~lvIiDEaH~~g~~-----~~~~l~~l~--------------------------------------~~~~vl 755 (1151)
T 2eyq_A 719 SDVKFKDLGLLIVDEEHRFGVR-----HKERIKAMR--------------------------------------ANVDIL 755 (1151)
T ss_dssp SCCCCSSEEEEEEESGGGSCHH-----HHHHHHHHH--------------------------------------TTSEEE
T ss_pred CCccccccceEEEechHhcChH-----HHHHHHHhc--------------------------------------CCCCEE
Confidence 2355789999999999996322 222222221 123789
Q ss_pred EEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHHHHH
Q 010196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLC 349 (515)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~ 349 (515)
++|||+.+.........+.++..+...... ...+..+... .........++... .+++++|||++++.++.++
T Consensus 756 ~lSATp~p~~l~~~~~~~~~~~~i~~~~~~---r~~i~~~~~~---~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~ 829 (1151)
T 2eyq_A 756 TLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVRE---YDSMVVREAILREILRGGQVYYLYNDVENIQKAA 829 (1151)
T ss_dssp EEESSCCCHHHHHHHTTTSEEEECCCCCCB---CBCEEEEEEE---CCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHH
T ss_pred EEcCCCChhhHHHHHhcCCCceEEecCCCC---ccccEEEEec---CCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHH
Confidence 999998766655554444444333222111 0112222221 22223333333332 4789999999999999999
Q ss_pred HHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccC-CCChhhhHHhhhhccc
Q 010196 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDK-PAYIKTYIHRAGRTAR 428 (515)
Q Consensus 350 ~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~-p~s~~~~~Qr~GR~gR 428 (515)
+.|+... .+..+..+||+|++.+|+++++.|++|+.+|||||+++++|+|+|++++||+++. +.+..+|+||+||+||
T Consensus 830 ~~L~~~~-p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR 908 (1151)
T 2eyq_A 830 ERLAELV-PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGR 908 (1151)
T ss_dssp HHHHHHC-TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCB
T ss_pred HHHHHhC-CCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCc
Confidence 9998763 2478999999999999999999999999999999999999999999999999988 5688999999999999
Q ss_pred CCCCccEEEEeechh
Q 010196 429 AGQLGRCFTLLHKDE 443 (515)
Q Consensus 429 ~g~~g~~~~~~~~~d 443 (515)
.|+.|.|++++.+.+
T Consensus 909 ~g~~g~~~ll~~~~~ 923 (1151)
T 2eyq_A 909 SHHQAYAWLLTPHPK 923 (1151)
T ss_dssp TTBCEEEEEEECCGG
T ss_pred CCCceEEEEEECCcc
Confidence 999999999987653
No 39
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=9.4e-42 Score=363.64 Aligned_cols=338 Identities=19% Similarity=0.243 Sum_probs=218.1
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc--CcccEEEEcccHHHHHHH-HHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV--RCLRALVVLPTRDLALQV-KDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~~lil~Pt~~L~~q~-~~~~~~~~~ 126 (515)
+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+..+.. .+.++||++|+++|+.|| .++++++++
T Consensus 7 ~l~~~Q~~~i~~il~----g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~ 82 (699)
T 4gl2_A 7 QLRPYQMEVAQPALE----GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK 82 (699)
T ss_dssp CCCHHHHHHHHHHHS----SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHT
T ss_pred CccHHHHHHHHHHHh----CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcC
Confidence 799999999998875 8899999999999999999999998876421 225799999999999999 999999987
Q ss_pred ccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhc-----CcCCCCCcceEE
Q 010196 127 AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA-----TRGFTLEHLCYL 201 (515)
Q Consensus 127 ~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~-----~~~~~~~~~~~v 201 (515)
. ++++..++|+....... ..+...++|+|+||++|.+.+.. ...+.+.++++|
T Consensus 83 ~-~~~v~~~~g~~~~~~~~---------------------~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lv 140 (699)
T 4gl2_A 83 K-WYRVIGLSGDTQLKISF---------------------PEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLI 140 (699)
T ss_dssp T-TSCEEEEC----CCCCH---------------------HHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEE
T ss_pred c-CceEEEEeCCcchhhHH---------------------HhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEE
Confidence 5 48889999887543221 12235679999999999988843 133567889999
Q ss_pred EEcchhHHHHHHHH-hHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCc
Q 010196 202 VVDETDRLLREAYQ-AWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP 280 (515)
Q Consensus 202 ViDEah~l~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~ 280 (515)
|+||||++...... ..+..++........ + ........+..+++++|||+....
T Consensus 141 ViDEaH~~~~~~~~~~i~~~~l~~~~~~~~--~-----------------------~~~~~~~~~~~~il~lTATp~~~~ 195 (699)
T 4gl2_A 141 IIDECHHTNKEAVYNNIMRHYLMQKLKNNR--L-----------------------KKENKPVIPLPQILGLTASPGVGG 195 (699)
T ss_dssp EEESGGGCBTTBSSCSHHHHHHHHHHHHHH--H-----------------------HC----CCCCCEEEEECSCCCCCS
T ss_pred EEECccccCccchHHHHHHHHHHhhhcccc--c-----------------------ccccccCCCCCEEEEecccccccc
Confidence 99999987443322 222222211000000 0 000000112237899999998631
Q ss_pred h--------hhh---hc------------------ccCCCeeEe--eCCccc------------------cC-C-ccc--
Q 010196 281 N--------KLA---QL------------------DLHHPLFLT--TGETRY------------------KL-P-ERL-- 307 (515)
Q Consensus 281 ~--------~~~---~~------------------~~~~~~~~~--~~~~~~------------------~~-~-~~~-- 307 (515)
. .+. .. ....|.... ...... .+ + ...
T Consensus 196 ~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~ 275 (699)
T 4gl2_A 196 ATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGT 275 (699)
T ss_dssp CCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSS
T ss_pred cccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccc
Confidence 1 000 00 001111000 000000 00 0 000
Q ss_pred --------------------------------------------------------------------------------
Q 010196 308 -------------------------------------------------------------------------------- 307 (515)
Q Consensus 308 -------------------------------------------------------------------------------- 307 (515)
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (699)
T 4gl2_A 276 QPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETD 355 (699)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHC------------CCHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhH
Confidence
Q ss_pred --------------ceeEE-eccCCCcHHHHHHHHHh----cC-CCeEEEEcCChhhHHHHHHHHhhcC---CCceeEEE
Q 010196 308 --------------ESYKL-ICESKLKPLYLVALLQS----LG-EEKCIVFTSSVESTHRLCTLLNHFG---ELRIKIKE 364 (515)
Q Consensus 308 --------------~~~~~-~~~~~~k~~~l~~~l~~----~~-~~~~lVf~~s~~~~~~l~~~L~~~~---~~~~~v~~ 364 (515)
..... ......|...|..++.. .+ +.++||||+++..++.+++.|.... ..++.+..
T Consensus 356 ~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~ 435 (699)
T 4gl2_A 356 RFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHH 435 (699)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEE
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEE
Confidence 00000 00012333333444432 24 7899999999999999999998751 12488999
Q ss_pred ccCc--------cCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEE
Q 010196 365 YSGL--------QRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCF 436 (515)
Q Consensus 365 ~~~~--------~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~ 436 (515)
+||+ |++.+|.++++.|++|+.+|||||+++++|||+|++++||+||+|+|+..|+||+||+||.| +.++
T Consensus 436 lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g--~~~~ 513 (699)
T 4gl2_A 436 LIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADE--STYV 513 (699)
T ss_dssp CCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSS--CEEE
T ss_pred EECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCCCC--ceEE
Confidence 9999 99999999999999999999999999999999999999999999999999999999976654 3444
Q ss_pred EEee
Q 010196 437 TLLH 440 (515)
Q Consensus 437 ~~~~ 440 (515)
++..
T Consensus 514 l~~~ 517 (699)
T 4gl2_A 514 LVAH 517 (699)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 4444
No 40
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.6e-41 Score=382.85 Aligned_cols=355 Identities=18% Similarity=0.242 Sum_probs=254.1
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc-------cCcccEEEE
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-------VRCLRALVV 107 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-------~~~~~~lil 107 (515)
|++....+++ ||.+|+++|.++++.++. .++|++++||||||||++|.++++..+.+.. ..+.++||+
T Consensus 66 Lp~~~~~~f~--g~~~ln~iQs~~~~~al~---~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyi 140 (1724)
T 4f92_B 66 LPKYAQAGFE--GFKTLNRIQSKLYRAALE---TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYI 140 (1724)
T ss_dssp SCGGGSTTCT--TCSBCCHHHHHTHHHHHT---CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEE
T ss_pred cCHHHHHhcC--CCCCCCHHHHHHHHHHHc---CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEE
Confidence 4554444332 799999999999998774 5899999999999999999999999987632 235689999
Q ss_pred cccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHH
Q 010196 108 LPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHI 187 (515)
Q Consensus 108 ~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l 187 (515)
+|+++|+.|+++.+++.+...|++|+.++|+.+.... ...+++|+|+||+++-.++
T Consensus 141 aP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~------------------------~~~~~~IlVtTpEkld~ll 196 (1724)
T 4f92_B 141 APMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKE------------------------EISATQIIVCTPEKWDIIT 196 (1724)
T ss_dssp CSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCT------------------------TGGGCSEEEECHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCcc------------------------ccCCCCEEEECHHHHHHHH
Confidence 9999999999999999888889999999998763221 1245799999999985555
Q ss_pred hcCcC-CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCc
Q 010196 188 NATRG-FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPR 266 (515)
Q Consensus 188 ~~~~~-~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (515)
++... ..++++++||+||+|.+ .+..+..++.++..+..... . ..+.
T Consensus 197 r~~~~~~~l~~v~~vIiDEvH~l-~d~RG~~lE~~l~rl~~~~~------------------~-------------~~~~ 244 (1724)
T 4f92_B 197 RKGGERTYTQLVRLIILDEIHLL-HDDRGPVLEALVARAIRNIE------------------M-------------TQED 244 (1724)
T ss_dssp TSSTTHHHHTTEEEEEETTGGGG-GSTTHHHHHHHHHHHHHHHH------------------H-------------HTCC
T ss_pred cCCccchhhcCcCEEEEecchhc-CCccHHHHHHHHHHHHHHHH------------------h-------------CCCC
Confidence 44221 13678999999999965 44677777776654321000 0 0023
Q ss_pred eeeEEEEEEecCCchhhhhcccCCCe--eEeeCCccccCCcccceeEEeccCCCc---H----HHHHHHHH-hcCCCeEE
Q 010196 267 LVKMVLSATLTQDPNKLAQLDLHHPL--FLTTGETRYKLPERLESYKLICESKLK---P----LYLVALLQ-SLGEEKCI 336 (515)
Q Consensus 267 ~~~i~~SaT~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~k---~----~~l~~~l~-~~~~~~~l 336 (515)
.+++++|||++ +..+++.+.-..+. ......... |..+++..+....... . ..+...+. ...++++|
T Consensus 245 ~riI~LSATl~-N~~dvA~wL~~~~~~~~~~~~~~~R--PvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~L 321 (1724)
T 4f92_B 245 VRLIGLSATLP-NYEDVATFLRVDPAKGLFYFDNSFR--PVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL 321 (1724)
T ss_dssp CEEEEEECSCT-THHHHHHHTTCCHHHHEEECCGGGC--SSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCEE
T ss_pred CcEEEEecccC-CHHHHHHHhCCCCCCCeEEECCCCc--cCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcEE
Confidence 48999999996 45555544322211 111111111 1122332222222211 1 11222222 23467899
Q ss_pred EEcCChhhHHHHHHHHhhcCC----------------------------------CceeEEEccCccCHHHHHHHHHHHh
Q 010196 337 VFTSSVESTHRLCTLLNHFGE----------------------------------LRIKIKEYSGLQRQSVRSKTLKAFR 382 (515)
Q Consensus 337 Vf~~s~~~~~~l~~~L~~~~~----------------------------------~~~~v~~~~~~~~~~~r~~~l~~f~ 382 (515)
|||+|++.|+.+++.|.+... ...++..+||+|++.+|..+.+.|+
T Consensus 322 VF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~ 401 (1724)
T 4f92_B 322 VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFA 401 (1724)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHH
Confidence 999999999999888754210 1235889999999999999999999
Q ss_pred cCCceEEEecCCccccCCCCCCCEEEE----cc------CCCChhhhHHhhhhcccCCCC--ccEEEEeechhHHHHHHH
Q 010196 383 EGKIQVLVSSDAMTRGMDVEGVNNVVN----YD------KPAYIKTYIHRAGRTARAGQL--GRCFTLLHKDEVKRFKKL 450 (515)
Q Consensus 383 ~g~~~vLv~T~~~~~GiDi~~v~~VI~----~~------~p~s~~~~~Qr~GR~gR~g~~--g~~~~~~~~~d~~~~~~~ 450 (515)
+|.++|||||++++.|||+|..++||. |+ .|.++.+|.||+|||||.|.+ |.+++++++.+...+..+
T Consensus 402 ~G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~l 481 (1724)
T 4f92_B 402 DKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSL 481 (1724)
T ss_dssp TTCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHH
T ss_pred CCCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHH
Confidence 999999999999999999999999985 43 345789999999999998764 999999999998887777
Q ss_pred HHH
Q 010196 451 LQK 453 (515)
Q Consensus 451 ~~~ 453 (515)
+..
T Consensus 482 l~~ 484 (1724)
T 4f92_B 482 LNQ 484 (1724)
T ss_dssp TTT
T ss_pred HcC
Confidence 543
No 41
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=2.6e-40 Score=336.06 Aligned_cols=294 Identities=25% Similarity=0.315 Sum_probs=217.3
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+|+|+|.+++..++. ++++++++|||+|||++|+.++... +.++||++|+++|+.||.++++++ +
T Consensus 93 ~l~~~Q~~ai~~i~~----~~~~ll~~~TGsGKT~~~l~~i~~~-------~~~~Lvl~P~~~L~~Q~~~~~~~~----~ 157 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (472)
T ss_dssp CBCHHHHHHHHHHTT----TTEEEEECCTTSCHHHHHHHHHHHH-------CSCEEEEESSHHHHHHHHHHGGGG----C
T ss_pred CcCHHHHHHHHHHHh----cCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEECCHHHHHHHHHHHHhC----C
Confidence 699999999988764 6789999999999999999887754 347999999999999999999984 6
Q ss_pred cE-EEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
++ ++.++|+.. ...+|+|+||+.+...+... ..++++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~Ivv~T~~~l~~~~~~~----~~~~~liIvDEaH~ 203 (472)
T 2fwr_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (472)
T ss_dssp GGGEEEBSSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEETGGG
T ss_pred CcceEEECCCcC------------------------------CcCCEEEEEcHHHHHHHHHh----cCCCCEEEEECCcC
Confidence 77 888888754 23599999999998766531 23589999999999
Q ss_pred HHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCC---------
Q 010196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD--------- 279 (515)
Q Consensus 209 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~--------- 279 (515)
+.+..+.. +...+. ..+.+++|||+...
T Consensus 204 ~~~~~~~~----~~~~~~---------------------------------------~~~~l~lSATp~~~~~~~~~l~~ 240 (472)
T 2fwr_A 204 LPAESYVQ----IAQMSI---------------------------------------APFRLGLTATFEREDGRHEILKE 240 (472)
T ss_dssp TTSTTTHH----HHHTCC---------------------------------------CSEEEEEESCCCCTTSGGGSHHH
T ss_pred CCChHHHH----HHHhcC---------------------------------------CCeEEEEecCccCCCCHHHHHHH
Confidence 87655543 232221 12678999998632
Q ss_pred ----------chhhhhcccCCCeeEe--eCC--cccc---------------------CCccccee--------------
Q 010196 280 ----------PNKLAQLDLHHPLFLT--TGE--TRYK---------------------LPERLESY-------------- 310 (515)
Q Consensus 280 ----------~~~~~~~~~~~~~~~~--~~~--~~~~---------------------~~~~~~~~-------------- 310 (515)
...+....+..+.... ... .... .......+
T Consensus 241 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (472)
T 2fwr_A 241 VVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEAL 320 (472)
T ss_dssp HTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTT
T ss_pred HhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHH
Confidence 1111111122211110 000 0000 00000000
Q ss_pred -------EEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhc
Q 010196 311 -------KLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (515)
Q Consensus 311 -------~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~ 383 (515)
.+.+....|...+..++....+.++||||+++..++.+++.|. +..+||+++..+|.++++.|++
T Consensus 321 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--------~~~~~g~~~~~~R~~~~~~F~~ 392 (472)
T 2fwr_A 321 RAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--------IPAITHRTSREEREEILEGFRT 392 (472)
T ss_dssp HHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------CCBCCSSSCSHHHHTHHHHHHH
T ss_pred HHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------cceeeCCCCHHHHHHHHHHHhC
Confidence 0112334566778888888778999999999999999999873 4568999999999999999999
Q ss_pred CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC-ccEE--EEeechh
Q 010196 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL-GRCF--TLLHKDE 443 (515)
Q Consensus 384 g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~--~~~~~~d 443 (515)
|+.+|||||+++++|+|+|++++||+++.|+++..|+||+||+||.|+. +.++ .+++...
T Consensus 393 g~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~t 455 (472)
T 2fwr_A 393 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRGT 455 (472)
T ss_dssp SSCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECSC
T ss_pred CCCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCCCCCceEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999855 4444 4555443
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=4.9e-40 Score=337.33 Aligned_cols=310 Identities=18% Similarity=0.189 Sum_probs=224.3
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+|+|+|.+|+..++. ++++++++|||+|||++++.++...+..+ ..++||++|+++|+.|+.+.++++....+
T Consensus 113 ~l~~~Q~~ai~~~~~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~ 185 (510)
T 2oca_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (510)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEEECCSTTTHHHHHHHHHHHHHHHC---SSEEEEEESSHHHHHHHHHHHHHTTSSCG
T ss_pred CCCHHHHHHHHHHHh----cCCcEEEeCCCCCHHHHHHHHHHHHHhCC---CCeEEEEECcHHHHHHHHHHHHHhhcCCc
Confidence 799999999998764 68999999999999999999988877643 23899999999999999999999866556
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
..+..++|+.+...+ +...++|+|+||+.+... ....+.++++||+||||++
T Consensus 186 ~~v~~~~~~~~~~~~------------------------~~~~~~I~i~T~~~l~~~----~~~~~~~~~liIiDE~H~~ 237 (510)
T 2oca_A 186 AMIKKIGGGASKDDK------------------------YKNDAPVVVGTWQTVVKQ----PKEWFSQFGMMMNDECHLA 237 (510)
T ss_dssp GGEEECGGGCCTTGG------------------------GCTTCSEEEEEHHHHTTS----CGGGGGGEEEEEEETGGGC
T ss_pred cceEEEecCCccccc------------------------cccCCcEEEEeHHHHhhc----hhhhhhcCCEEEEECCcCC
Confidence 788888887653321 235679999999976532 2234678999999999998
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhh-ccc
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ-LDL 288 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~-~~~ 288 (515)
.... +..++..+. +..+++++|||++........ ..+
T Consensus 238 ~~~~----~~~il~~~~--------------------------------------~~~~~l~lSATp~~~~~~~~~~~~~ 275 (510)
T 2oca_A 238 TGKS----ISSIISGLN--------------------------------------NCMFKFGLSGSLRDGKANIMQYVGM 275 (510)
T ss_dssp CHHH----HHHHGGGCT--------------------------------------TCCEEEEEESCGGGCSSCHHHHHHH
T ss_pred Cccc----HHHHHHhcc--------------------------------------cCcEEEEEEeCCCCCcccHHHhHHh
Confidence 6633 333333321 112678999999765433211 112
Q ss_pred CCCeeEeeCCccc-----cCCc--------------------ccce-eEEeccCCCcHHHHHHHHHhc---CCCeEEEEc
Q 010196 289 HHPLFLTTGETRY-----KLPE--------------------RLES-YKLICESKLKPLYLVALLQSL---GEEKCIVFT 339 (515)
Q Consensus 289 ~~~~~~~~~~~~~-----~~~~--------------------~~~~-~~~~~~~~~k~~~l~~~l~~~---~~~~~lVf~ 339 (515)
..+.......... ..+. .... +........+...+..++... .+.++|||+
T Consensus 276 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~ 355 (510)
T 2oca_A 276 FGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFK 355 (510)
T ss_dssp HCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred hCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 2222222111100 0000 0000 001111122334455555443 344566666
Q ss_pred CChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEec-CCccccCCCCCCCEEEEccCCCChhh
Q 010196 340 SSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS-DAMTRGMDVEGVNNVVNYDKPAYIKT 418 (515)
Q Consensus 340 ~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T-~~~~~GiDi~~v~~VI~~~~p~s~~~ 418 (515)
+ ..+++.+++.|...+ ..+..+||+++..+|.++++.|++|+.+||||| +++++|+|+|++++||+++.|+++..
T Consensus 356 ~-~~~~~~l~~~L~~~~---~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~ 431 (510)
T 2oca_A 356 H-VSHGKAIFDLIKNEY---DKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVLAHGVKSKII 431 (510)
T ss_dssp S-HHHHHHHHHHHHTTC---SSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCH
T ss_pred c-HHHHHHHHHHHHHcC---CCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEEeCCCCCHHH
Confidence 6 899999999999865 489999999999999999999999999999999 99999999999999999999999999
Q ss_pred hHHhhhhcccCCCCccEEEEee
Q 010196 419 YIHRAGRTARAGQLGRCFTLLH 440 (515)
Q Consensus 419 ~~Qr~GR~gR~g~~g~~~~~~~ 440 (515)
|+|++||+||.|+.|.++++++
T Consensus 432 ~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 432 VLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp HHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHhcccccCCCCceEEEEE
Confidence 9999999999998875555544
No 43
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=2.9e-40 Score=340.80 Aligned_cols=312 Identities=14% Similarity=0.108 Sum_probs=224.9
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++.+.+++... ...++|+|+.+ ++.+..++|+++.||||||||++|++|+++.+.. .+.++||++||++|+
T Consensus 157 ~~~~~~~~l~~~-~~~~lpiq~~~----i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~---~~~~vLvl~PtreLa 228 (618)
T 2whx_A 157 KSGDYVSAITQA-ERIGEPDYEVD----EDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK---RRLRTLILAPTRVVA 228 (618)
T ss_dssp -----CEECBCC-CCCCCCCCCCC----GGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH---TTCCEEEEESSHHHH
T ss_pred chHHHHHHHhhc-cccCCCccccC----HHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh---CCCeEEEEcChHHHH
Confidence 556655555543 47889999876 4445679999999999999999999999988765 345899999999999
Q ss_pred HHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCC
Q 010196 115 LQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFT 194 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~ 194 (515)
.|+++.++. ..+.. .+... . .....+..+.++|.+.+...+... ..
T Consensus 229 ~Qi~~~l~~------~~v~~-~~~~l-~------------------------~~~tp~~~i~~~t~~~l~~~l~~~--~~ 274 (618)
T 2whx_A 229 AEMEEALRG------LPIRY-QTPAV-K------------------------SDHTGREIVDLMCHATFTTRLLSS--TR 274 (618)
T ss_dssp HHHHHHTTT------SCEEE-CCTTS-S------------------------CCCCSSSCEEEEEHHHHHHHHHHC--SS
T ss_pred HHHHHHhcC------CceeE-ecccc-e------------------------eccCCCceEEEEChHHHHHHHhcc--cc
Confidence 999988763 22331 11110 0 001123357778888887666553 34
Q ss_pred CCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEE
Q 010196 195 LEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSA 274 (515)
Q Consensus 195 ~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Sa 274 (515)
+.++++||+||||++ +.++...+..+...+.. +..+++++||
T Consensus 275 l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~-------------------------------------~~~q~il~SA 316 (618)
T 2whx_A 275 VPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTA 316 (618)
T ss_dssp CCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHH-------------------------------------TSCEEEEECS
T ss_pred ccCCeEEEEECCCCC-CccHHHHHHHHHHHhcc-------------------------------------cCccEEEEEC
Confidence 778999999999997 77777777777765431 1238899999
Q ss_pred EecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhh
Q 010196 275 TLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNH 354 (515)
Q Consensus 275 T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~ 354 (515)
|++.....+.. .++..+..... .+. .+...+...+.. ..+++||||++++.++.+++.|..
T Consensus 317 T~~~~~~~~~~---~~~~~~~v~~~---~~~------------~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~ 377 (618)
T 2whx_A 317 TPPGSTDPFPQ---SNSPIEDIERE---IPE------------RSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRK 377 (618)
T ss_dssp SCTTCCCSSCC---CSSCEEEEECC---CCS------------SCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCchhhhhhhc---cCCceeeeccc---CCH------------HHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHH
Confidence 99877654443 22322222111 000 001112222332 367999999999999999999998
Q ss_pred cCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEE--------------------EEccCCC
Q 010196 355 FGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNV--------------------VNYDKPA 414 (515)
Q Consensus 355 ~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~V--------------------I~~~~p~ 414 (515)
.+ ..+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++| |+++.|.
T Consensus 378 ~g---~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~ 449 (618)
T 2whx_A 378 SG---KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPV 449 (618)
T ss_dssp TT---CCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC
T ss_pred cC---CcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccC
Confidence 75 789999984 688899999999999999999999999998 8888 7778899
Q ss_pred ChhhhHHhhhhcccCCC-CccEEEEee---chhHHHHHHHHHH
Q 010196 415 YIKTYIHRAGRTARAGQ-LGRCFTLLH---KDEVKRFKKLLQK 453 (515)
Q Consensus 415 s~~~~~Qr~GR~gR~g~-~g~~~~~~~---~~d~~~~~~~~~~ 453 (515)
+..+|+||+||+||.|. .|.+++|+. +.|...+..+.+.
T Consensus 450 s~~~yiQR~GRaGR~g~~~G~ai~l~~~~~~~d~~~l~~le~~ 492 (618)
T 2whx_A 450 TPASAAQRRGRIGRNPAQEDDQYVFSGDPLKNDEDHAHWTEAK 492 (618)
T ss_dssp CHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTCHHHHHHH
T ss_pred CHHHHHHhccccCCCCCCCCeEEEEccCCchhhHHHHHHHHhH
Confidence 99999999999999975 799999997 6666555555553
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=2.7e-39 Score=324.34 Aligned_cols=288 Identities=15% Similarity=0.184 Sum_probs=207.4
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCE-EEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDL-CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~-ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
|+.+|+|+|+ +++.++ .++++ +++||||||||++|++|++..+.. .+.+++|++||++|+.|+++.+..
T Consensus 1 G~~q~~~iq~-~i~~~l----~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIF----RKKRLTIMDLHPGAGKTKRILPSIVREALL---RRLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGG----STTCEEEECCCTTSSCCTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHH----hcCCeEEEECCCCCCHhhHHHHHHHHHHHh---cCCcEEEECCCHHHHHHHHHHhcC--
Confidence 6788999985 655554 46666 999999999999999999987655 345899999999999999998752
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
..+....+.... ....+..|.++|++.+...+.+. ..+.++++||+||
T Consensus 71 ----~~v~~~~~~~~~--------------------------~~~~~~~i~~~t~~~l~~~l~~~--~~l~~~~~iViDE 118 (451)
T 2jlq_A 71 ----LPIRYQTPAVKS--------------------------DHTGREIVDLMCHATFTTRLLSS--TRVPNYNLIVMDE 118 (451)
T ss_dssp ----SCEEECCTTCSC--------------------------CCCSSCCEEEEEHHHHHHHHHHC--SCCCCCSEEEEET
T ss_pred ----ceeeeeeccccc--------------------------cCCCCceEEEEChHHHHHHhhCc--ccccCCCEEEEeC
Confidence 233221111100 01234579999999998887653 4477899999999
Q ss_pred hhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhh
Q 010196 206 TDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQ 285 (515)
Q Consensus 206 ah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~ 285 (515)
||++ +..+...+..+...... +..+++++|||++........
T Consensus 119 ah~~-~~~~~~~~~~~~~~~~~-------------------------------------~~~~~i~~SAT~~~~~~~~~~ 160 (451)
T 2jlq_A 119 AHFT-DPCSVAARGYISTRVEM-------------------------------------GEAAAIFMTATPPGSTDPFPQ 160 (451)
T ss_dssp TTCC-SHHHHHHHHHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCC
T ss_pred CccC-CcchHHHHHHHHHhhcC-------------------------------------CCceEEEEccCCCccchhhhc
Confidence 9976 43333322222221110 234889999999775543322
Q ss_pred cccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEc
Q 010196 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 365 (515)
..+..+.... ..+. ..+ ... ...+.. ..+++||||++++.++.+++.|+..+ +.+..+
T Consensus 161 ---~~~~~~~~~~---~~p~--~~~------~~~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g---~~~~~l 218 (451)
T 2jlq_A 161 ---SNSPIEDIER---EIPE--RSW------NTG----FDWITD-YQGKTVWFVPSIKAGNDIANCLRKSG---KRVIQL 218 (451)
T ss_dssp ---CSSCEEEEEC---CCCS--SCC------SSS----CHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTT---CCEEEE
T ss_pred ---CCCceEecCc---cCCc--hhh------HHH----HHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcC---CeEEEC
Confidence 2232222211 1111 011 111 222333 35699999999999999999998765 788899
Q ss_pred cCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEcc--------------------CCCChhhhHHhhhh
Q 010196 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYD--------------------KPAYIKTYIHRAGR 425 (515)
Q Consensus 366 ~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~--------------------~p~s~~~~~Qr~GR 425 (515)
|+++. .++++.|++|+.+|||||+++++|+|+|+ ++||+++ .|.+..+|+||+||
T Consensus 219 h~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GR 293 (451)
T 2jlq_A 219 SRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGR 293 (451)
T ss_dssp CTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTT
T ss_pred CHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccc
Confidence 99764 57899999999999999999999999999 9999998 99999999999999
Q ss_pred cccCCC-CccEEEEeec
Q 010196 426 TARAGQ-LGRCFTLLHK 441 (515)
Q Consensus 426 ~gR~g~-~g~~~~~~~~ 441 (515)
+||.|. .|.+++|...
T Consensus 294 aGR~g~~~g~~~~~~~~ 310 (451)
T 2jlq_A 294 IGRNPAQEDDQYVFSGD 310 (451)
T ss_dssp SSCCTTCCCEEEEECSC
T ss_pred cCCCCCCCccEEEEeCC
Confidence 999998 7888888743
No 45
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=5.9e-40 Score=327.51 Aligned_cols=279 Identities=15% Similarity=0.155 Sum_probs=190.2
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHH
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 145 (515)
+..|+|++++||||||||++|++|+++.+... +.+++|++||++|+.|+++.++.+ + +....+..
T Consensus 5 l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~---~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~------ 69 (440)
T 1yks_A 5 LKKGMTTVLDFHPGAGKTRRFLPQILAECARR---RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAF------ 69 (440)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCC------
T ss_pred hhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc---CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccc------
Confidence 45799999999999999999999999877653 458999999999999999988744 2 22111100
Q ss_pred HHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC-------cCCCCCcceEEEEcchhHHHHHHHHhHH
Q 010196 146 SELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT-------RGFTLEHLCYLVVDETDRLLREAYQAWL 218 (515)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~vViDEah~l~~~~~~~~~ 218 (515)
. .++||+++.+++... ....+.++++||+||||++ +..+...+
T Consensus 70 ----------------------------~-~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~~~~~~~~ 119 (440)
T 1yks_A 70 ----------------------------S-AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-DPASIAAR 119 (440)
T ss_dssp ----------------------------C-CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-SHHHHHHH
T ss_pred ----------------------------e-eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-CcchHHHH
Confidence 0 266776654333221 1124678999999999997 44333222
Q ss_pred HHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC
Q 010196 219 PTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (515)
Q Consensus 219 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
..+...... +..+++++|||++.....+.... .+......
T Consensus 120 ~~~~~~~~~-------------------------------------~~~~~l~~SAT~~~~~~~~~~~~--~~~~~~~~- 159 (440)
T 1yks_A 120 GWAAHRARA-------------------------------------NESATILMTATPPGTSDEFPHSN--GEIEDVQT- 159 (440)
T ss_dssp HHHHHHHHT-------------------------------------TSCEEEEECSSCTTCCCSSCCCS--SCEEEEEC-
T ss_pred HHHHHHhcc-------------------------------------CCceEEEEeCCCCchhhhhhhcC--CCeeEeee-
Confidence 222222210 12388999999987765444321 12111100
Q ss_pred ccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHH
Q 010196 299 TRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTL 378 (515)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l 378 (515)
......... +...+.. .++++||||++++.++.+++.|+..+ ..+..+|| .+|.+++
T Consensus 160 --------------~~~~~~~~~-~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~---~~v~~lhg----~~R~~~~ 216 (440)
T 1yks_A 160 --------------DIPSEPWNT-GHDWILA-DKRPTAWFLPSIRAANVMAASLRKAG---KSVVVLNR----KTFEREY 216 (440)
T ss_dssp --------------CCCSSCCSS-SCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTT---CCEEECCS----SSCC---
T ss_pred --------------ccChHHHHH-HHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcC---CCEEEecc----hhHHHHH
Confidence 001111111 1122222 26799999999999999999999865 88999999 3588999
Q ss_pred HHHhcCCceEEEecCCccccCCCCCCCEEEE-------------------ccCCCChhhhHHhhhhcccC-CCCccEEEE
Q 010196 379 KAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------YDKPAYIKTYIHRAGRTARA-GQLGRCFTL 438 (515)
Q Consensus 379 ~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~-------------------~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~ 438 (515)
+.|++|+.+|||||+++++|+|+| +++||+ ++.|.+..+|+||+||+||. |+.|.|++|
T Consensus 217 ~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 217 PTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp -----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred hhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEE
Confidence 999999999999999999999999 999986 88899999999999999998 678999999
Q ss_pred e---echhHHHHHHHHHH
Q 010196 439 L---HKDEVKRFKKLLQK 453 (515)
Q Consensus 439 ~---~~~d~~~~~~~~~~ 453 (515)
+ ++.|...+..+...
T Consensus 296 ~~~~~~~~~~~l~~l~~~ 313 (440)
T 1yks_A 296 SEPTSENNAHHVCWLEAS 313 (440)
T ss_dssp CSCCCCCCTTBHHHHHHH
T ss_pred eccCChhhhhhhhhhhHH
Confidence 6 56665555555443
No 46
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=2.1e-38 Score=335.02 Aligned_cols=330 Identities=18% Similarity=0.221 Sum_probs=236.3
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhc-ccCcccEEEEcccHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNR-AVRCLRALVVLPTRD 112 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~-~~~~~~~lil~Pt~~ 112 (515)
++++.+.+.+...+ ..|.+.|.+++..++. .++++++.||||||||. ++|++-..... ...+.++++++|+++
T Consensus 78 ~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~---~~~~vii~gpTGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~ 151 (773)
T 2xau_A 78 EFTPKYVDILKIRR-ELPVHAQRDEFLKLYQ---NNQIMVFVGETGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRV 151 (773)
T ss_dssp BCCHHHHHHHHHHT-TSGGGGGHHHHHHHHH---HCSEEEEECCTTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHH
T ss_pred CCCHHHHHHHHHhh-cCChHHHHHHHHHHHh---CCCeEEEECCCCCCHHH--HHHHHHHHhccccCCCceEEecCchHH
Confidence 38999999999988 6899999999988764 46789999999999999 45555221111 112456999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
|+.|+++.+.... +..++..+|.....+ .......+|+++||+++.+.+...
T Consensus 152 La~q~~~~l~~~~---~~~v~~~vG~~i~~~-----------------------~~~~~~~~I~v~T~G~l~r~l~~~-- 203 (773)
T 2xau_A 152 AAMSVAQRVAEEM---DVKLGEEVGYSIRFE-----------------------NKTSNKTILKYMTDGMLLREAMED-- 203 (773)
T ss_dssp HHHHHHHHHHHHT---TCCBTTTEEEEETTE-----------------------EECCTTCSEEEEEHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHh---CCchhheecceeccc-----------------------cccCCCCCEEEECHHHHHHHHhhC--
Confidence 9999998776543 222222222110000 011235699999999999887653
Q ss_pred CCCCcceEEEEcchhH-HHHHHH-HhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeE
Q 010196 193 FTLEHLCYLVVDETDR-LLREAY-QAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKM 270 (515)
Q Consensus 193 ~~~~~~~~vViDEah~-l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 270 (515)
..+.++++||+||+|. .++... ...+..+.... +..+++
T Consensus 204 ~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~---------------------------------------~~~~iI 244 (773)
T 2xau_A 204 HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR---------------------------------------PDLKII 244 (773)
T ss_dssp TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC---------------------------------------TTCEEE
T ss_pred ccccCCCEEEecCccccccchHHHHHHHHHHHHhC---------------------------------------CCceEE
Confidence 3478899999999996 555332 33344443321 223789
Q ss_pred EEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHH----HHHHHHHhcCCCeEEEEcCChhhHH
Q 010196 271 VLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPL----YLVALLQSLGEEKCIVFTSSVESTH 346 (515)
Q Consensus 271 ~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~----~l~~~l~~~~~~~~lVf~~s~~~~~ 346 (515)
++|||+. ...+.......+.+ ....... .+..++.......... .+..++....++++||||+++..++
T Consensus 245 l~SAT~~--~~~l~~~~~~~~vi-~v~gr~~----pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~ 317 (773)
T 2xau_A 245 IMSATLD--AEKFQRYFNDAPLL-AVPGRTY----PVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIE 317 (773)
T ss_dssp EEESCSC--CHHHHHHTTSCCEE-ECCCCCC----CEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHH
T ss_pred EEecccc--HHHHHHHhcCCCcc-cccCccc----ceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHH
Confidence 9999994 34444444333433 2222211 2333333333333332 2333334446889999999999999
Q ss_pred HHHHHHhhc--------CCCceeEEEccCccCHHHHHHHHHHHh-----cCCceEEEecCCccccCCCCCCCEEEEccC-
Q 010196 347 RLCTLLNHF--------GELRIKIKEYSGLQRQSVRSKTLKAFR-----EGKIQVLVSSDAMTRGMDVEGVNNVVNYDK- 412 (515)
Q Consensus 347 ~l~~~L~~~--------~~~~~~v~~~~~~~~~~~r~~~l~~f~-----~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~- 412 (515)
.+++.|... ...++.+..+||++++.+|..+++.|+ +|..+|||||+++++|||+|++++||++++
T Consensus 318 ~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~ 397 (773)
T 2xau_A 318 DAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFS 397 (773)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEE
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCc
Confidence 999999741 123588999999999999999999999 999999999999999999999999999887
Q ss_pred -----------------CCChhhhHHhhhhcccCCCCccEEEEeechhH
Q 010196 413 -----------------PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV 444 (515)
Q Consensus 413 -----------------p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~ 444 (515)
|.|..+|+||+|||||. ..|.|+.++++.+.
T Consensus 398 k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~~l~~~~~~ 445 (773)
T 2xau_A 398 KQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCFRLYTEEAF 445 (773)
T ss_dssp EEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEEESSCHHHH
T ss_pred cceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEEEEecHHHh
Confidence 88999999999999999 78999999988775
No 47
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.3e-38 Score=328.49 Aligned_cols=307 Identities=14% Similarity=0.166 Sum_probs=206.2
Q ss_pred HHHhCCCC-----CcchhhH-----HHHHHHh--CCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 42 ALQNMGIS-----SLFPVQV-----AVWQETI--GPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 42 ~l~~~~~~-----~~~~~Q~-----~a~~~~~--~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.+..+||. .|+++|+ ++++.++ ..+..++|++++||||||||++|++|+++.+.. .+.+++|++|
T Consensus 202 ~l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~---~~~~~lilaP 278 (673)
T 2wv9_A 202 GLYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ---KRLRTAVLAP 278 (673)
T ss_dssp EEEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH---TTCCEEEEES
T ss_pred EeeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh---CCCcEEEEcc
Confidence 34456776 8999999 7755443 111279999999999999999999999988765 3458999999
Q ss_pred cHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhc
Q 010196 110 TRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINA 189 (515)
Q Consensus 110 t~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~ 189 (515)
|++|+.|+++.++.+ ++. ...+... .....+.-+-+.+.+.+...+..
T Consensus 279 Tr~La~Q~~~~l~~~----~i~--~~~~~l~--------------------------~v~tp~~ll~~l~~~~l~~~l~~ 326 (673)
T 2wv9_A 279 TRVVAAEMAEALRGL----PVR--YLTPAVQ--------------------------REHSGNEIVDVMCHATLTHRLMS 326 (673)
T ss_dssp SHHHHHHHHHHTTTS----CCE--ECCC-----------------------------CCCCSCCCEEEEEHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhcC----Cee--eeccccc--------------------------ccCCHHHHHHHHHhhhhHHHHhc
Confidence 999999999988754 221 1111000 00001112333344444433333
Q ss_pred CcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceee
Q 010196 190 TRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVK 269 (515)
Q Consensus 190 ~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (515)
. ..+.++++||+||||++ +..+...+..+...... ...++
T Consensus 327 ~--~~l~~l~lvViDEaH~~-~~~~~~~~~~l~~~~~~-------------------------------------~~~~v 366 (673)
T 2wv9_A 327 P--LRVPNYNLFVMDEAHFT-DPASIAARGYIATRVEA-------------------------------------GEAAA 366 (673)
T ss_dssp S--SCCCCCSEEEEESTTCC-CHHHHHHHHHHHHHHHT-------------------------------------TSCEE
T ss_pred c--cccccceEEEEeCCccc-CccHHHHHHHHHHhccc-------------------------------------cCCcE
Confidence 2 35778999999999997 22222222222222110 12388
Q ss_pred EEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHH
Q 010196 270 MVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLC 349 (515)
Q Consensus 270 i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~ 349 (515)
+++|||++.....+... ..|....... ........ ++..+.. .++++||||++++.++.++
T Consensus 367 l~~SAT~~~~i~~~~~~--~~~i~~v~~~---------------~~~~~~~~-~l~~l~~-~~~~~lVF~~s~~~~e~la 427 (673)
T 2wv9_A 367 IFMTATPPGTSDPFPDT--NSPVHDVSSE---------------IPDRAWSS-GFEWITD-YAGKTVWFVASVKMSNEIA 427 (673)
T ss_dssp EEECSSCTTCCCSSCCC--SSCEEEEECC---------------CCSSCCSS-CCHHHHS-CCSCEEEECSSHHHHHHHH
T ss_pred EEEcCCCChhhhhhccc--CCceEEEeee---------------cCHHHHHH-HHHHHHh-CCCCEEEEECCHHHHHHHH
Confidence 99999998775544332 1222111100 00011111 1122222 4789999999999999999
Q ss_pred HHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEE--------------------
Q 010196 350 TLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVN-------------------- 409 (515)
Q Consensus 350 ~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~-------------------- 409 (515)
+.|+..+ +.+..+||+ +|.++++.|++|+.+|||||+++++|+|+| +++||+
T Consensus 428 ~~L~~~g---~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll 499 (673)
T 2wv9_A 428 QCLQRAG---KRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILS 499 (673)
T ss_dssp HHHHTTT---CCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEEC
T ss_pred HHHHhCC---CeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceec
Confidence 9998765 889999994 789999999999999999999999999999 999998
Q ss_pred ccCCCChhhhHHhhhhcccC-CCCccEEEEe---echhHHHHHHH
Q 010196 410 YDKPAYIKTYIHRAGRTARA-GQLGRCFTLL---HKDEVKRFKKL 450 (515)
Q Consensus 410 ~~~p~s~~~~~Qr~GR~gR~-g~~g~~~~~~---~~~d~~~~~~~ 450 (515)
|+.|.+..+|+||+||+||. |+.|.|++|+ ++.|...+..+
T Consensus 500 ~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~~~~~~~d~~~l~~i 544 (673)
T 2wv9_A 500 VPSAITSASAAQRRGRVGRNPSQIGDEYHYGGGTSEDDTMLAHWT 544 (673)
T ss_dssp CSEECCHHHHHHHHTTSSCCSSCCCEEEEECSCCCCCCTTBHHHH
T ss_pred ccCCCCHHHHHHHhhccCCCCCCCCEEEEEEecCChhHHHHHHHH
Confidence 56899999999999999999 7889999996 56664444433
No 48
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=3e-38 Score=322.25 Aligned_cols=281 Identities=18% Similarity=0.247 Sum_probs=206.1
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
.++++|.++ +..+..+++++++||||||||++|.+|+++ .+.+++|++||++|+.|+++.+.+.. +
T Consensus 217 P~~~~q~~i----~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSP----PAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSC----CCCCSSCEEEEEECCTTSCTTTHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHH----HHHHHcCCeEEEEeCCchhHHHHHHHHHHH-------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 455666554 555567899999999999999999998874 24489999999999999999776653 4
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
..+...+|+.. +..+++|+|+||++|+ .. ..+.+.++++||+||||.
T Consensus 283 ~~vg~~vG~~~----------------------------~~~~~~IlV~TPGrLl---~~-~~l~l~~l~~lVlDEAH~- 329 (666)
T 3o8b_A 283 IDPNIRTGVRT----------------------------ITTGAPVTYSTYGKFL---AD-GGCSGGAYDIIICDECHS- 329 (666)
T ss_dssp CCCEEECSSCE----------------------------ECCCCSEEEEEHHHHH---HT-TSCCTTSCSEEEETTTTC-
T ss_pred CCeeEEECcEe----------------------------ccCCCCEEEECcHHHH---hC-CCcccCcccEEEEccchh-
Confidence 55666666643 2356799999999984 22 456678899999999975
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccC
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLH 289 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~ 289 (515)
++.++...+..+++.++.... ...+++|||++.... ..
T Consensus 330 l~~~~~~~l~~Il~~l~~~~~------------------------------------~llil~SAT~~~~i~------~~ 367 (666)
T 3o8b_A 330 TDSTTILGIGTVLDQAETAGA------------------------------------RLVVLATATPPGSVT------VP 367 (666)
T ss_dssp CSHHHHHHHHHHHHHTTTTTC------------------------------------SEEEEEESSCTTCCC------CC
T ss_pred cCccHHHHHHHHHHhhhhcCC------------------------------------ceEEEECCCCCcccc------cC
Confidence 677777777777776543211 135777999976432 11
Q ss_pred CCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCcc
Q 010196 290 HPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQ 369 (515)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~ 369 (515)
.+........ ........ ..+.. +.....+++||||++++.++.+++.|+..+ +.+..+||++
T Consensus 368 ~p~i~~v~~~---~~~~i~~~------~~~~~-----l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g---~~v~~lHG~l 430 (666)
T 3o8b_A 368 HPNIEEVALS---NTGEIPFY------GKAIP-----IEAIRGGRHLIFCHSKKKCDELAAKLSGLG---INAVAYYRGL 430 (666)
T ss_dssp CTTEEEEECB---SCSSEEET------TEEEC-----GGGSSSSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECTTS
T ss_pred CcceEEEeec---ccchhHHH------Hhhhh-----hhhccCCcEEEEeCCHHHHHHHHHHHHhCC---CcEEEecCCC
Confidence 2211111000 00000000 00000 123357899999999999999999999765 8899999999
Q ss_pred CHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEE----------Ecc-----------CCCChhhhHHhhhhccc
Q 010196 370 RQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVV----------NYD-----------KPAYIKTYIHRAGRTAR 428 (515)
Q Consensus 370 ~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI----------~~~-----------~p~s~~~~~Qr~GR~gR 428 (515)
++.+ |+++..+|||||+++++|||+| +++|| ||| .|.+..+|+||+||+||
T Consensus 431 ~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 431 DVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 9865 4566679999999999999997 99988 677 89999999999999999
Q ss_pred CCCCccEEEEeechhHHH
Q 010196 429 AGQLGRCFTLLHKDEVKR 446 (515)
Q Consensus 429 ~g~~g~~~~~~~~~d~~~ 446 (515)
|+.|. +.|+++.|...
T Consensus 503 -g~~G~-i~lvt~~e~~~ 518 (666)
T 3o8b_A 503 -GRRGI-YRFVTPGERPS 518 (666)
T ss_dssp -SSCEE-EEESCCCCBCS
T ss_pred -CCCCE-EEEEecchhhc
Confidence 88999 99998876443
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=3.5e-38 Score=316.77 Aligned_cols=269 Identities=17% Similarity=0.228 Sum_probs=192.8
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHH
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (515)
..+++++++||||||||++|++|+++.+.. .+.++||++||++|+.|+++.++. ..+....+.....
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~---~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~~~~~---- 85 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQ---QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSAVQRE---- 85 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHH---TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC----------
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHh---CCCcEEEECchHHHHHHHHHHhcC------ceEeEEecccccC----
Confidence 468999999999999999999999988764 245899999999999999998862 2332222111100
Q ss_pred HHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH-----HHHHHHHhHHHHH
Q 010196 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR-----LLREAYQAWLPTV 221 (515)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~-----l~~~~~~~~~~~i 221 (515)
-..+..+.++|.+.+...+... ..+.++++||+||||+ ++..++... .
T Consensus 86 ----------------------~t~~~~i~~~~~~~l~~~l~~~--~~l~~~~~iViDEaH~~~~~~~~~~~~~~~---~ 138 (459)
T 2z83_A 86 ----------------------HQGNEIVDVMCHATLTHRLMSP--NRVPNYNLFVMDEAHFTDPASIAARGYIAT---K 138 (459)
T ss_dssp ------------------------CCCSEEEEEHHHHHHHHHSC--C-CCCCSEEEESSTTCCSHHHHHHHHHHHH---H
T ss_pred ----------------------CCCCcEEEEEchHHHHHHhhcc--ccccCCcEEEEECCccCCchhhHHHHHHHH---H
Confidence 0123357788888887766553 4477899999999998 444433221 1
Q ss_pred HhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccc
Q 010196 222 LQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRY 301 (515)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (515)
... +..+++++|||++.....+... ..|......
T Consensus 139 ~~~----------------------------------------~~~~~il~SAT~~~~~~~~~~~--~~pi~~~~~---- 172 (459)
T 2z83_A 139 VEL----------------------------------------GEAAAIFMTATPPGTTDPFPDS--NAPIHDLQD---- 172 (459)
T ss_dssp HHT----------------------------------------TSCEEEEECSSCTTCCCSSCCC--SSCEEEEEC----
T ss_pred hcc----------------------------------------CCccEEEEEcCCCcchhhhccC--CCCeEEecc----
Confidence 100 2238899999998765544332 333332111
Q ss_pred cCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHH
Q 010196 302 KLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (515)
Q Consensus 302 ~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f 381 (515)
..+. ...... ...+... ++++||||+++..++.+++.|+..+ +.+..+|++ +|.++++.|
T Consensus 173 ~~~~--------~~~~~~----~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~~g---~~v~~lh~~----~R~~~~~~f 232 (459)
T 2z83_A 173 EIPD--------RAWSSG----YEWITEY-AGKTVWFVASVKMGNEIAMCLQRAG---KKVIQLNRK----SYDTEYPKC 232 (459)
T ss_dssp CCCS--------SCCSSC----CHHHHHC-CSCEEEECSCHHHHHHHHHHHHHTT---CCEEEESTT----CCCCCGGGS
T ss_pred cCCc--------chhHHH----HHHHHhc-CCCEEEEeCChHHHHHHHHHHHhcC---CcEEecCHH----HHHHHHhhc
Confidence 0000 001111 2223332 6799999999999999999999865 889999985 578899999
Q ss_pred hcCCceEEEecCCccccCCCCCCCEEEE--------------------ccCCCChhhhHHhhhhcccCCC-CccEEEEee
Q 010196 382 REGKIQVLVSSDAMTRGMDVEGVNNVVN--------------------YDKPAYIKTYIHRAGRTARAGQ-LGRCFTLLH 440 (515)
Q Consensus 382 ~~g~~~vLv~T~~~~~GiDi~~v~~VI~--------------------~~~p~s~~~~~Qr~GR~gR~g~-~g~~~~~~~ 440 (515)
++|+.+|||||+++++|+|+|+ ++||+ |+.|.|..+|+||+||+||.|. .|.+++|+.
T Consensus 233 ~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~ 311 (459)
T 2z83_A 233 KNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGG 311 (459)
T ss_dssp SSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred cCCCceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEc
Confidence 9999999999999999999999 99999 7799999999999999999997 899999997
Q ss_pred ch
Q 010196 441 KD 442 (515)
Q Consensus 441 ~~ 442 (515)
+.
T Consensus 312 ~~ 313 (459)
T 2z83_A 312 AT 313 (459)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=1.2e-36 Score=317.18 Aligned_cols=308 Identities=17% Similarity=0.152 Sum_probs=185.1
Q ss_pred CcchhhHHHHHHHhCCCCCC-CCEEEECCCCchhHHHhHHHHHHHhhhc-----ccCcccEEEEcccHHHHHHHH-HHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFE-RDLCINSPTGSGKTLSYALPIVQTLSNR-----AVRCLRALVVLPTRDLALQVK-DVFA 122 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~-~~~ii~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~~lil~Pt~~L~~q~~-~~~~ 122 (515)
.|+|+|.+|+..++..+..+ +++++++|||+|||++++..+...+..+ .....++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 69999999999887544444 5689999999999999765554444432 114568999999999999999 7777
Q ss_pred HhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcC---cCCCCCcce
Q 010196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINAT---RGFTLEHLC 199 (515)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~---~~~~~~~~~ 199 (515)
.+. ..+..+.++. .....+|+|+||++|....... ..+....++
T Consensus 258 ~~~----~~~~~~~~~~-----------------------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~ 304 (590)
T 3h1t_A 258 PFG----DARHKIEGGK-----------------------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFD 304 (590)
T ss_dssp TTC----SSEEECCC-------------------------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCS
T ss_pred hcc----hhhhhhhccC-----------------------------CCCCCcEEEEEhhhhccccccccccccCCCCccC
Confidence 663 3333333221 2345699999999998875421 224566799
Q ss_pred EEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCC
Q 010196 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQD 279 (515)
Q Consensus 200 ~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~ 279 (515)
+||+||||++..... ..+..++..+. ..+.+++|||+...
T Consensus 305 lvIiDEaH~~~~~~~-~~~~~il~~~~---------------------------------------~~~~l~lTATP~~~ 344 (590)
T 3h1t_A 305 LIIIDECHRGSARDN-SNWREILEYFE---------------------------------------PAFQIGMTATPLRE 344 (590)
T ss_dssp EEEESCCC----------CHHHHHHST---------------------------------------TSEEEEEESSCSCT
T ss_pred EEEEECCccccccch-HHHHHHHHhCC---------------------------------------cceEEEeccccccc
Confidence 999999999865421 23344444432 12679999998754
Q ss_pred chhhhhcccCCCee------------------EeeCCccc--cC----------CcccceeEEecc-------CCCcHHH
Q 010196 280 PNKLAQLDLHHPLF------------------LTTGETRY--KL----------PERLESYKLICE-------SKLKPLY 322 (515)
Q Consensus 280 ~~~~~~~~~~~~~~------------------~~~~~~~~--~~----------~~~~~~~~~~~~-------~~~k~~~ 322 (515)
........+..+.. ........ .. ...+........ ...+...
T Consensus 345 ~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 424 (590)
T 3h1t_A 345 DNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKDFERVIALKARTDA 424 (590)
T ss_dssp TTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCSHHHHHHHHHTHHH
T ss_pred cchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHHhhhHhcChHHHHH
Confidence 32211111111111 11000000 00 000000000000 0011112
Q ss_pred ----HHHHHHh-cCCCeEEEEcCChhhHHHHHHHHhhcCC-----CceeEEEccCccCHHHHHHHHHHHhcCCce---EE
Q 010196 323 ----LVALLQS-LGEEKCIVFTSSVESTHRLCTLLNHFGE-----LRIKIKEYSGLQRQSVRSKTLKAFREGKIQ---VL 389 (515)
Q Consensus 323 ----l~~~l~~-~~~~~~lVf~~s~~~~~~l~~~L~~~~~-----~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~---vL 389 (515)
+...+.. ...+++||||+++.+++.+++.|...+. ....+..+||+++. +|.++++.|++|+.+ ||
T Consensus 425 i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~il 503 (590)
T 3h1t_A 425 FAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVIL 503 (590)
T ss_dssp HHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEE
T ss_pred HHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEE
Confidence 2223333 2457999999999999999999977541 11237788999864 799999999998766 88
Q ss_pred EecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCC
Q 010196 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQ 431 (515)
Q Consensus 390 v~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~ 431 (515)
|+|+++++|+|+|++++||++++|+|+..|+||+||+||.+.
T Consensus 504 vtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 504 TTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 999999999999999999999999999999999999999875
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=2.6e-36 Score=327.67 Aligned_cols=124 Identities=20% Similarity=0.209 Sum_probs=112.9
Q ss_pred CCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC--ceEEEecC
Q 010196 316 SKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK--IQVLVSSD 393 (515)
Q Consensus 316 ~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~--~~vLv~T~ 393 (515)
...|...+..++....+.++||||+++..++.+++.|... .++.+..+||+|++.+|..+++.|++|+ ++|||||+
T Consensus 487 ~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~--~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~ 564 (968)
T 3dmq_A 487 FDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER--EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT--TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred ccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH--cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc
Confidence 4457888899998878899999999999999999999853 1388999999999999999999999998 99999999
Q ss_pred CccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeec
Q 010196 394 AMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHK 441 (515)
Q Consensus 394 ~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 441 (515)
++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.|+++...
T Consensus 565 v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 565 IGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp CTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred hhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 999999999999999999999999999999999999999876666443
No 52
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=2.3e-36 Score=301.10 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=189.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISEL 148 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 148 (515)
|++++++||||||||++|++|+++.+.. .+.+++|++||++|+.|+++.+. +..+....|.....
T Consensus 2 g~~~lv~a~TGsGKT~~~l~~~l~~~~~---~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~~------ 66 (431)
T 2v6i_A 2 RELTVLDLHPGAGKTRRVLPQLVREAVK---KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQSE------ 66 (431)
T ss_dssp CCEEEEECCTTSCTTTTHHHHHHHHHHH---TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC-------------
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCcccc------
Confidence 7899999999999999999999966654 24589999999999999998775 34555544432110
Q ss_pred hccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccC
Q 010196 149 IKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSD 228 (515)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~ 228 (515)
-..+..+.++|.+.+...+.. ...+.++++||+||||++ +..+......+......
T Consensus 67 --------------------~~~~~~~~~~~~~~l~~~l~~--~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~- 122 (431)
T 2v6i_A 67 --------------------RTGNEIVDFMCHSTFTMKLLQ--GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSM- 122 (431)
T ss_dssp ----------------------CCCSEEEEEHHHHHHHHHH--TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHT-
T ss_pred --------------------CCCCceEEEEchHHHHHHHhc--CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhC-
Confidence 012335677888888766655 244778999999999997 44333333333333211
Q ss_pred cccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccc
Q 010196 229 NENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLE 308 (515)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (515)
+..+++++|||++.....+... ..|....... .
T Consensus 123 ------------------------------------~~~~~l~~SAT~~~~~~~~~~~--~~~i~~~~~~----~----- 155 (431)
T 2v6i_A 123 ------------------------------------GDAGAIFMTATPPGTTEAFPPS--NSPIIDEETR----I----- 155 (431)
T ss_dssp ------------------------------------TSCEEEEEESSCTTCCCSSCCC--SSCCEEEECC----C-----
T ss_pred ------------------------------------CCCcEEEEeCCCCcchhhhcCC--CCceeecccc----C-----
Confidence 2238899999998765443321 1121111000 0
Q ss_pred eeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceE
Q 010196 309 SYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQV 388 (515)
Q Consensus 309 ~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~v 388 (515)
...+...+...+... ++++||||++++.++.+++.|+..+ ..+..+||+ +|.++++.|++|+.+|
T Consensus 156 -------~~~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~---~~v~~lhg~----~r~~~~~~f~~g~~~v 220 (431)
T 2v6i_A 156 -------PDKAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAG---KKVLYLNRK----TFESEYPKCKSEKWDF 220 (431)
T ss_dssp -------CSSCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTT---CCEEEESTT----THHHHTTHHHHSCCSE
T ss_pred -------CHHHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcC---CeEEEeCCc----cHHHHHHhhcCCCCeE
Confidence 001111122334333 5689999999999999999998864 889999997 5788999999999999
Q ss_pred EEecCCccccCCCCCCCE-----------------EEEccCCCChhhhHHhhhhcccCCCC-ccEEEEe
Q 010196 389 LVSSDAMTRGMDVEGVNN-----------------VVNYDKPAYIKTYIHRAGRTARAGQL-GRCFTLL 439 (515)
Q Consensus 389 Lv~T~~~~~GiDi~~v~~-----------------VI~~~~p~s~~~~~Qr~GR~gR~g~~-g~~~~~~ 439 (515)
||||+++++|+|+| +.+ ||+++.|.+..+|+||+||+||.|.. |.+++|.
T Consensus 221 LVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~~ 288 (431)
T 2v6i_A 221 VITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAYS 288 (431)
T ss_dssp EEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEEC
T ss_pred EEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEEc
Confidence 99999999999999 554 67889999999999999999999854 5566665
No 53
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=5.9e-35 Score=301.87 Aligned_cols=284 Identities=15% Similarity=0.175 Sum_probs=200.4
Q ss_pred CCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHH
Q 010196 67 LFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEIS 146 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 146 (515)
+.+++++++||||||||+ +++..+...+ ..+|++||++||.|+++.+++. ++++..++|+....
T Consensus 153 l~rk~vlv~apTGSGKT~----~al~~l~~~~----~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~~~i---- 216 (677)
T 3rc3_A 153 MQRKIIFHSGPTNSGKTY----HAIQKYFSAK----SGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEERVT---- 216 (677)
T ss_dssp SCCEEEEEECCTTSSHHH----HHHHHHHHSS----SEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSCEEC----
T ss_pred cCCCEEEEEcCCCCCHHH----HHHHHHHhcC----CeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCeeEE----
Confidence 468899999999999998 3444444432 4699999999999999999886 67888888886420
Q ss_pred HHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcc
Q 010196 147 ELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTR 226 (515)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~ 226 (515)
.. .-....+++++|++.+. ....+++||+||||++++.+++..+..++..+.
T Consensus 217 --v~-----------------TpGr~~~il~~T~e~~~---------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~ 268 (677)
T 3rc3_A 217 --VQ-----------------PNGKQASHVSCTVEMCS---------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLC 268 (677)
T ss_dssp --CS-----------------TTCCCCSEEEEEGGGCC---------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCC
T ss_pred --ec-----------------CCCcccceeEecHhHhh---------hcccCCEEEEecceecCCccchHHHHHHHHccC
Confidence 00 00012467777765431 245679999999999988888877777776543
Q ss_pred cCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcc
Q 010196 227 SDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPER 306 (515)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (515)
. ...+++++|||.+ ....+.... .....+......
T Consensus 269 ~-------------------------------------~~i~il~~SAT~~-~i~~l~~~~-~~~~~v~~~~r~------ 303 (677)
T 3rc3_A 269 A-------------------------------------EEVHLCGEPAAID-LVMELMYTT-GEEVEVRDYKRL------ 303 (677)
T ss_dssp E-------------------------------------EEEEEEECGGGHH-HHHHHHHHH-TCCEEEEECCCS------
T ss_pred c-------------------------------------cceEEEeccchHH-HHHHHHHhc-CCceEEEEeeec------
Confidence 1 2236788888842 222222211 222222111100
Q ss_pred cceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhc--C
Q 010196 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE--G 384 (515)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~--g 384 (515)
.........- ..+... ....+|||++++.++.+++.|...+ ..+..+||+|++.+|.++++.|++ |
T Consensus 304 -~~l~~~~~~l-------~~l~~~-~~g~iIf~~s~~~ie~la~~L~~~g---~~v~~lHG~L~~~~R~~~~~~F~~~~g 371 (677)
T 3rc3_A 304 -TPISVLDHAL-------ESLDNL-RPGDCIVCFSKNDIYSVSRQIEIRG---LESAVIYGSLPPGTKLAQAKKFNDPND 371 (677)
T ss_dssp -SCEEECSSCC-------CSGGGC-CTTEEEECSSHHHHHHHHHHHHHTT---CCCEEECTTSCHHHHHHHHHHHHCTTS
T ss_pred -chHHHHHHHH-------HHHHhc-CCCCEEEEcCHHHHHHHHHHHHhcC---CCeeeeeccCCHHHHHHHHHHHHccCC
Confidence 0000100000 011122 3445889999999999999999865 889999999999999999999999 8
Q ss_pred CceEEEecCCccccCCCCCCCEEEEccC--------------CCChhhhHHhhhhcccCCCC---ccEEEEeechhHHHH
Q 010196 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDK--------------PAYIKTYIHRAGRTARAGQL---GRCFTLLHKDEVKRF 447 (515)
Q Consensus 385 ~~~vLv~T~~~~~GiDi~~v~~VI~~~~--------------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~d~~~~ 447 (515)
..+|||||+++++|+|+ ++++||++++ |.+..+|+||+|||||.|.. |.|+. +.+.+...+
T Consensus 372 ~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~-l~~~d~~~~ 449 (677)
T 3rc3_A 372 PCKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTT-MNHEDLSLL 449 (677)
T ss_dssp SCCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEE-SSTTHHHHH
T ss_pred CeEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEE-EecchHHHH
Confidence 89999999999999999 8999999998 77899999999999999975 54444 455566666
Q ss_pred HHHHHH
Q 010196 448 KKLLQK 453 (515)
Q Consensus 448 ~~~~~~ 453 (515)
.+++..
T Consensus 450 ~~~~~~ 455 (677)
T 3rc3_A 450 KEILKR 455 (677)
T ss_dssp HHHHHS
T ss_pred HHHHhc
Confidence 666554
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=5.9e-35 Score=298.79 Aligned_cols=317 Identities=16% Similarity=0.226 Sum_probs=212.0
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV 128 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 128 (515)
..|+|+|.+++..+......+.++++.++||+|||++++..+...... ....++|||||+ +|+.||.++++++++.
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~--~~~~~~LIv~P~-~l~~qw~~e~~~~~~~- 111 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE--NELTPSLVICPL-SVLKNWEEELSKFAPH- 111 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT--TCCSSEEEEECS-TTHHHHHHHHHHHCTT-
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc--CCCCCEEEEccH-HHHHHHHHHHHHHCCC-
Confidence 379999999987764322357899999999999999976544444333 233479999995 6899999999999864
Q ss_pred CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 129 GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 129 ~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
.++..+.|+... .....++|+|+||+.+..... +....+++||+||||+
T Consensus 112 -~~v~~~~g~~~~--------------------------~~~~~~~ivi~t~~~l~~~~~----l~~~~~~~vIvDEaH~ 160 (500)
T 1z63_A 112 -LRFAVFHEDRSK--------------------------IKLEDYDIILTTYAVLLRDTR----LKEVEWKYIVIDEAQN 160 (500)
T ss_dssp -SCEEECSSSTTS--------------------------CCGGGSSEEEEEHHHHTTCHH----HHTCCEEEEEEETGGG
T ss_pred -ceEEEEecCchh--------------------------ccccCCcEEEeeHHHHhccch----hcCCCcCEEEEeCccc
Confidence 566666665421 011346999999999865432 2234689999999999
Q ss_pred HHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCc-hhhhhc-
Q 010196 209 LLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-NKLAQL- 286 (515)
Q Consensus 209 l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~~- 286 (515)
+.+... .....+..+. ....+++|||+..+. .++...
T Consensus 161 ~kn~~~--~~~~~l~~l~---------------------------------------~~~~l~LTaTP~~n~~~el~~ll 199 (500)
T 1z63_A 161 IKNPQT--KIFKAVKELK---------------------------------------SKYRIALTGTPIENKVDDLWSIM 199 (500)
T ss_dssp GSCTTS--HHHHHHHTSC---------------------------------------EEEEEEECSSCSTTCHHHHHHHH
T ss_pred cCCHhH--HHHHHHHhhc---------------------------------------cCcEEEEecCCCCCCHHHHHHHH
Confidence 854321 1112222111 115688899985431 111000
Q ss_pred ----------------------------------ccCCCeeEeeCCc----cccCCcccceeE-E---------------
Q 010196 287 ----------------------------------DLHHPLFLTTGET----RYKLPERLESYK-L--------------- 312 (515)
Q Consensus 287 ----------------------------------~~~~~~~~~~~~~----~~~~~~~~~~~~-~--------------- 312 (515)
.+..|..+..... ...++....... +
T Consensus 200 ~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~~~y~~~~~ 279 (500)
T 1z63_A 200 TFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQAAMYKAEVE 279 (500)
T ss_dssp HHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHHHHHHHHHH
Confidence 0001111111100 001111100000 0
Q ss_pred ----------------------------------------eccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHH
Q 010196 313 ----------------------------------------ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCT 350 (515)
Q Consensus 313 ----------------------------------------~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~ 350 (515)
......|...+.+++... .+.++||||+++..++.+.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~ 359 (500)
T 1z63_A 280 NLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRN 359 (500)
T ss_dssp HHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHH
T ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHH
Confidence 011234555666666643 57899999999999999999
Q ss_pred HHhhc-CCCceeEEEccCccCHHHHHHHHHHHhcC-Cce-EEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcc
Q 010196 351 LLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTA 427 (515)
Q Consensus 351 ~L~~~-~~~~~~v~~~~~~~~~~~r~~~l~~f~~g-~~~-vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~g 427 (515)
.|... + ..+..+||+++..+|.++++.|++| +.+ +|++|+++++|+|+|++++||++|+|+++..|.||+||++
T Consensus 360 ~l~~~~~---~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~ 436 (500)
T 1z63_A 360 IIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVY 436 (500)
T ss_dssp HHHHHHT---CCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTT
T ss_pred HHHHhhC---CCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHH
Confidence 99864 4 7788999999999999999999998 455 7899999999999999999999999999999999999999
Q ss_pred cCCCCccE--EEEeechhH
Q 010196 428 RAGQLGRC--FTLLHKDEV 444 (515)
Q Consensus 428 R~g~~g~~--~~~~~~~d~ 444 (515)
|.|+.+.+ +.++....+
T Consensus 437 R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 437 RIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp TTTTTSCEEEEEEEETTSH
T ss_pred HcCCCCeeEEEEEEeCCCH
Confidence 99988665 445565543
No 55
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=100.00 E-value=1.6e-32 Score=275.32 Aligned_cols=386 Identities=17% Similarity=0.178 Sum_probs=239.8
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|+ .|++.|.-+.-.+. .|+ |..+.||+|||+++.+|++-.... +..+.|++|++.||.|-++++..+.
T Consensus 72 lg~-r~~dvQligg~~L~----~G~--iaEM~TGEGKTLva~lp~~lnAL~----G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 72 LGM-RPFDVQVMGGIALH----EGK--VAEMKTGEGKTLAATMPIYLNALI----GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp TSC-CCCHHHHHHHHHHH----TTC--EEECCTTSCHHHHTHHHHHHHHTT----SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHHHHHHHh----CCC--hhhccCCCCccHHHHHHHHHHHhc----CCceEEEeccHHHHHhHHHHHHHHH
Confidence 676 68999987754432 244 999999999999999998855444 3379999999999999999999999
Q ss_pred cccCcEEEEeecCC-------chHH----HHHH-HhccCccccc-----------------ccCCchhHHHhhccCCcEE
Q 010196 126 PAVGLSVGLAVGQS-------SIAD----EISE-LIKRPKLEAG-----------------ICYDPEDVLQELQSAVDIL 176 (515)
Q Consensus 126 ~~~~~~v~~~~g~~-------~~~~----~~~~-~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~Iv 176 (515)
..+|++|+++++.. ...+ .... +.-.|....+ ...++..-... -.+||+
T Consensus 141 ~~Lglsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~a--Y~~DIt 218 (822)
T 3jux_A 141 LFLGLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEA--YLCDVT 218 (822)
T ss_dssp HHTTCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHH--HHSSEE
T ss_pred HHhCCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHH--hcCCCE
Confidence 99999999998831 0000 0000 0000000000 00111111111 236999
Q ss_pred EeCChHH-HHHHhcCcC-----CCCCcceEEEEcchhHHHHHH----------------HHhHHHHHHhhcccCcc----
Q 010196 177 VATPGRL-MDHINATRG-----FTLEHLCYLVVDETDRLLREA----------------YQAWLPTVLQLTRSDNE---- 230 (515)
Q Consensus 177 v~Tp~~l-~~~l~~~~~-----~~~~~~~~vViDEah~l~~~~----------------~~~~~~~i~~~~~~~~~---- 230 (515)
++|..-| .++|+.+-. .-...+.+.|+||+|.++-+. ....+..+...+.....
T Consensus 219 YgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 298 (822)
T 3jux_A 219 YGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVD 298 (822)
T ss_dssp EEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEEC
T ss_pred EccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEE
Confidence 9998776 455543221 224568999999999875321 11111222211111000
Q ss_pred -----------------------cccCCccc----cccccccc-------------------------------------
Q 010196 231 -----------------------NRFSDAST----FLPSAFGS------------------------------------- 246 (515)
Q Consensus 231 -----------------------~~~~~~~~----~~~~~~~~------------------------------------- 246 (515)
+.+..... ....++..
T Consensus 299 ek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GL 378 (822)
T 3jux_A 299 EKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGL 378 (822)
T ss_dssp CSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGH
T ss_pred cccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHH
Confidence 00000000 00000000
Q ss_pred ---hhhhhcccccc-----------CCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCccccCCcccceeEE
Q 010196 247 ---LKTIRRCGVER-----------GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGETRYKLPERLESYKL 312 (515)
Q Consensus 247 ---~~~~~~~~~~~-----------~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (515)
+.......+.. .|...+ -...+||+|......++...+..+ ++...... +.........+
T Consensus 379 HQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y---~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtnk-p~~R~d~~d~v 452 (822)
T 3jux_A 379 HQAIEAKEGVPIKEESITYATITFQNYFRMY---EKLAGMTGTAKTEESEFVQVYGME--VVVIPTHK-PMIRKDHDDLV 452 (822)
T ss_dssp HHHHHHHHSSCCCCCCCEEEEECHHHHHTTS---SEEEEEESSCGGGHHHHHHHSCCC--EEECCCSS-CCCCEECCCEE
T ss_pred HHHHHHHcCCCCCCCcchhHHHHHHHHHHHh---hHHeEECCCCchHHHHHHHHhCCe--EEEECCCC-CcceeecCcEE
Confidence 00000000000 000011 146899999977666665544333 22222111 11111122234
Q ss_pred eccCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEE
Q 010196 313 ICESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLV 390 (515)
Q Consensus 313 ~~~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv 390 (515)
......|...+...+... .+.++||||+|+..++.+++.|...+ ++...+||+..+.++..+..+|+.| .|+|
T Consensus 453 y~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~G---i~~~vLhgkq~~rE~~ii~~ag~~g--~VtV 527 (822)
T 3jux_A 453 FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKG---IPHQVLNAKYHEKEAEIVAKAGQKG--MVTI 527 (822)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTT---CCCEEECSCHHHHHHHHHHHHHSTT--CEEE
T ss_pred EecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCC---CCEEEeeCCchHHHHHHHHhCCCCC--eEEE
Confidence 455667888888877653 57899999999999999999999876 8899999997766666666666666 6999
Q ss_pred ecCCccccCCCC--------CCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhH-------HHHHHHHHHhc
Q 010196 391 SSDAMTRGMDVE--------GVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEV-------KRFKKLLQKAD 455 (515)
Q Consensus 391 ~T~~~~~GiDi~--------~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~-------~~~~~~~~~~~ 455 (515)
||++++||+|++ +..+||++++|.|.+.|+||+||+||.|.+|.+++|++.+|. +.+..+++.+.
T Consensus 528 ATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~ 607 (822)
T 3jux_A 528 ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILK 607 (822)
T ss_dssp EETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSS
T ss_pred EcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcC
Confidence 999999999998 567999999999999999999999999999999999998872 34455555543
No 56
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=7.3e-34 Score=261.70 Aligned_cols=212 Identities=28% Similarity=0.425 Sum_probs=182.0
Q ss_pred CCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
.|.++.+|+++. +++.+.+++.++||..|+|+|.++++.++. |+|+++.||||+|||++|++|++..+..
T Consensus 24 ~p~~~~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----g~~~l~~apTGsGKT~~~~l~~l~~l~~ 93 (242)
T 3fe2_A 24 CPKPVLNFYEAN------FPANVMDVIARQNFTEPTAIQAQGWPVALS----GLDMVGVAQTGSGKTLSYLLPAIVHINH 93 (242)
T ss_dssp CCCCCSSTTTTT------CCHHHHHHHHTTTCCSCCHHHHHHHHHHHH----TCCEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCcCHHHHHHHHHHHHHHHh
Confidence 455667777775 999999999999999999999999988764 8999999999999999999999998875
Q ss_pred cc----cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccC
Q 010196 97 RA----VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (515)
Q Consensus 97 ~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (515)
.. ..++++||++||++|+.|+.+.+++++...++++..++|+.+....... +..+
T Consensus 94 ~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~ 152 (242)
T 3fe2_A 94 QPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRD---------------------LERG 152 (242)
T ss_dssp SCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHH---------------------HHHC
T ss_pred ccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHH---------------------hcCC
Confidence 32 3466899999999999999999999998889999999999887665433 3456
Q ss_pred CcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhc
Q 010196 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (515)
Q Consensus 173 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
++|+|+||++|.+++.. ....+.++++||+||||++++.+|...+..++..++
T Consensus 153 ~~I~v~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~-------------------------- 205 (242)
T 3fe2_A 153 VEICIATPGRLIDFLEC-GKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIR-------------------------- 205 (242)
T ss_dssp CSEEEECHHHHHHHHHH-TSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSC--------------------------
T ss_pred CCEEEECHHHHHHHHHc-CCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCC--------------------------
Confidence 79999999999999876 445688999999999999999999988888887653
Q ss_pred cccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC
Q 010196 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
+..+++++|||++..+..+....+.+|..+..+.
T Consensus 206 ------------~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 239 (242)
T 3fe2_A 206 ------------PDRQTLMWSATWPKEVRQLAEDFLKDYIHINIGA 239 (242)
T ss_dssp ------------SSCEEEEEESCCCHHHHHHHHHHCSSCEEEEECC
T ss_pred ------------ccceEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 2238899999999999999999999998887754
No 57
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=9.2e-33 Score=254.79 Aligned_cols=199 Identities=32% Similarity=0.506 Sum_probs=171.9
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.+.++|+++||..|+++|.++++.++. ++++++.||||+|||++|++|+++.+.... .+.++||++||++|
T Consensus 49 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-~~~~~lil~Ptr~L 123 (249)
T 3ber_A 49 GVTDVLCEACDQLGWTKPTKIQIEAIPLALQ----GRDIIGLAETGSGKTGAFALPILNALLETP-QRLFALVLTPTREL 123 (249)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHSC-CSSCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhC----CCCEEEEcCCCCCchhHhHHHHHHHHhcCC-CCceEEEEeCCHHH
Confidence 3999999999999999999999999998865 899999999999999999999999887653 45689999999999
Q ss_pred HHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 114 ALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
+.|+++.+++++...++++..++|+.....+.. .+..+++|+|+||++|.+++.....+
T Consensus 124 ~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~~~I~v~Tp~~l~~~l~~~~~~ 182 (249)
T 3ber_A 124 AFQISEQFEALGSSIGVQSAVIVGGIDSMSQSL---------------------ALAKKPHIIIATPGRLIDHLENTKGF 182 (249)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHH---------------------HHHTCCSEEEECHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhccCCeeEEEEECCCChHHHHH---------------------HhcCCCCEEEECHHHHHHHHHcCCCc
Confidence 999999999999888899999999887655432 23457899999999999998875556
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||||++.+.+|...+..++..++. ..+++++|
T Consensus 183 ~l~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~S 224 (249)
T 3ber_A 183 NLRALKYLVMDEADRILNMDFETEVDKILKVIPR--------------------------------------DRKTFLFS 224 (249)
T ss_dssp CCTTCCEEEECSHHHHHHTTCHHHHHHHHHSSCS--------------------------------------SSEEEEEE
T ss_pred CccccCEEEEcChhhhhccChHHHHHHHHHhCCC--------------------------------------CCeEEEEe
Confidence 7889999999999999999888888888766531 23789999
Q ss_pred EEecCCchhhhhcccCCCeeEee
Q 010196 274 ATLTQDPNKLAQLDLHHPLFLTT 296 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~~~ 296 (515)
||++..+..+....+.+|..+..
T Consensus 225 AT~~~~v~~~~~~~l~~p~~i~v 247 (249)
T 3ber_A 225 ATMTKKVQKLQRAALKNPVKCAV 247 (249)
T ss_dssp SSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccCCHHHHHHHHHHCCCCEEEEe
Confidence 99999888889888999987754
No 58
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=8.4e-33 Score=261.68 Aligned_cols=199 Identities=21% Similarity=0.289 Sum_probs=167.8
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+|++.++++|..+||..|+++|.++++.++.. .++|++++||||||||++|++|+++.+... ..++++||++||++|
T Consensus 98 ~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~--~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-~~~~~~lil~PtreL 174 (300)
T 3fmo_B 98 RLKPQLLQGVYAMGFNRPSKIQENALPLMLAE--PPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-NKYPQCLCLSPTYEL 174 (300)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSS--SCCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcC--CCCeEEEECCCCCCccHHHHHHHHHhhhcc-CCCceEEEEcCcHHH
Confidence 39999999999999999999999999988641 249999999999999999999999988764 346689999999999
Q ss_pred HHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+.|+++.++.++... ++.+....|+...... ...+++|+|+||++|++++.+.+.
T Consensus 175 a~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~IlV~TP~~l~~~l~~~~~ 230 (300)
T 3fmo_B 175 ALQTGKVIEQMGKFYPELKLAYAVRGNKLERG------------------------QKISEQIVIGTPGTVLDWCSKLKF 230 (300)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT------------------------CCCCCSEEEECHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh------------------------hcCCCCEEEECHHHHHHHHHhcCC
Confidence 999999999998764 5788888887653211 134679999999999999977566
Q ss_pred CCCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
+.++++++||+||||+|++ .++...+..++..++ +..|+++
T Consensus 231 ~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~--------------------------------------~~~q~i~ 272 (300)
T 3fmo_B 231 IDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLP--------------------------------------RNCQMLL 272 (300)
T ss_dssp CCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSC--------------------------------------TTCEEEE
T ss_pred CChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCC--------------------------------------CCCEEEE
Confidence 7788999999999999998 688888887776653 2238999
Q ss_pred EEEEecCCchhhhhcccCCCeeEeeC
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTTG 297 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (515)
+|||++..+..++...+.+|..+...
T Consensus 273 ~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 273 FSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999999999999999887653
No 59
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=2.3e-32 Score=250.96 Aligned_cols=209 Identities=29% Similarity=0.465 Sum_probs=174.0
Q ss_pred ccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc
Q 010196 19 VDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA 98 (515)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~ 98 (515)
....+|++++ +++.+.+.|.++||..|+++|.++++.++. ++++++++|||+|||++|++|+++.+....
T Consensus 22 ~~~~~f~~~~------l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~a~TGsGKT~~~~~~~l~~l~~~~ 91 (236)
T 2pl3_A 22 NEITRFSDFP------LSKKTLKGLQEAQYRLVTEIQKQTIGLALQ----GKDVLGAAKTGSGKTLAFLVPVLEALYRLQ 91 (236)
T ss_dssp GGCSBGGGSC------CCHHHHHHHHHTTCCBCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHHHTT
T ss_pred cccCCHhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEEeCCCCcHHHHHHHHHHHHHHhhc
Confidence 3445566664 999999999999999999999999988764 899999999999999999999999886521
Q ss_pred ---cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcE
Q 010196 99 ---VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (515)
Q Consensus 99 ---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I 175 (515)
..+.++||++||++|+.|+++.++++....++++..++|+.+....... ..+++|
T Consensus 92 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~i 149 (236)
T 2pl3_A 92 WTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAER----------------------INNINI 149 (236)
T ss_dssp CCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHH----------------------HTTCSE
T ss_pred ccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHh----------------------CCCCCE
Confidence 2356899999999999999999999988888999999998876554322 145799
Q ss_pred EEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhcccc
Q 010196 176 LVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGV 255 (515)
Q Consensus 176 vv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (515)
+|+||+++.+++.....+.+.++++||+||||++.+.++...+..++..++.
T Consensus 150 iv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~---------------------------- 201 (236)
T 2pl3_A 150 LVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMGFADTMNAVIENLPK---------------------------- 201 (236)
T ss_dssp EEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHTTTHHHHHHHHHTSCT----------------------------
T ss_pred EEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcCCcHHHHHHHHHhCCC----------------------------
Confidence 9999999999887754566788999999999999998888888888776532
Q ss_pred ccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeC
Q 010196 256 ERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTG 297 (515)
Q Consensus 256 ~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~ 297 (515)
..+++++|||++.....+....+.+|..+...
T Consensus 202 ----------~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 202 ----------KRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp ----------TSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ----------CCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 23789999999988888888899999887654
No 60
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1e-31 Score=280.58 Aligned_cols=377 Identities=19% Similarity=0.185 Sum_probs=222.1
Q ss_pred CcchhhHHHHHHHhCCC-----CCCCCEEEECCCCchhHHHhHHHHHHHhhhccc---CcccEEEEcccHHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPG-----LFERDLCINSPTGSGKTLSYALPIVQTLSNRAV---RCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~-----~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~---~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
.|+|+|.+++..+.... ..+.+.|+..+||+|||++++..+...+...+. ...++|||+|+ +|+.||.+++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 69999999998765321 346789999999999999988777666554422 22368999997 8999999999
Q ss_pred HHhccccCcEEEEeecCCchHH--HHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcce
Q 010196 122 AAIAPAVGLSVGLAVGQSSIAD--EISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLC 199 (515)
Q Consensus 122 ~~~~~~~~~~v~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~ 199 (515)
.++++. .+.+..++++..... ....+.... .....++|+|+|++.+...... +....++
T Consensus 134 ~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~---------------~~~~~~~vvi~ty~~l~~~~~~---l~~~~~~ 194 (644)
T 1z3i_X 134 GKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQ---------------GMRIPTPILIISYETFRLHAEV---LHKGKVG 194 (644)
T ss_dssp HHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCC---------------SSCCSCCEEEEEHHHHHHHTTT---TTTSCCC
T ss_pred HHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhc---------------CCCCCCcEEEeeHHHHHhhHHH---hhcCCcc
Confidence 999875 456666666543221 111111100 0012468999999998765432 3345789
Q ss_pred EEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCcccccccc---------------ccchhhh--------------
Q 010196 200 YLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSA---------------FGSLKTI-------------- 250 (515)
Q Consensus 200 ~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~-------------- 250 (515)
+||+||||++-+.... ....+..+... ..+.-.++..... ++.....
T Consensus 195 ~vI~DEaH~ikn~~~~--~~~al~~l~~~--~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~ 270 (644)
T 1z3i_X 195 LVICDEGHRLKNSDNQ--TYLALNSMNAQ--RRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDA 270 (644)
T ss_dssp EEEETTGGGCCTTCHH--HHHHHHHHCCS--EEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHST
T ss_pred EEEEECceecCChhhH--HHHHHHhcccC--cEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCc
Confidence 9999999997432211 11111111111 0111111111110 0000000
Q ss_pred ---------------------hccccccC--CCCCCCCceeeEEEEEEecCCchhhhhcc--------------------
Q 010196 251 ---------------------RRCGVERG--FKDKPYPRLVKMVLSATLTQDPNKLAQLD-------------------- 287 (515)
Q Consensus 251 ---------------------~~~~~~~~--~~~~~~~~~~~i~~SaT~~~~~~~~~~~~-------------------- 287 (515)
.+....+. ......|..........++.....+....
T Consensus 271 ~~~~~~~~~~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l 350 (644)
T 1z3i_X 271 DASDKDRAAGEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSL 350 (644)
T ss_dssp TCCSHHHHHHHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHH
Confidence 00000000 00011122122222222211111100000
Q ss_pred ---------cCCCeeEee----C-----CccccCCcccceeEEeccCCCcHHHHHHHHHh---cCCCeEEEEcCChhhHH
Q 010196 288 ---------LHHPLFLTT----G-----ETRYKLPERLESYKLICESKLKPLYLVALLQS---LGEEKCIVFTSSVESTH 346 (515)
Q Consensus 288 ---------~~~~~~~~~----~-----~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~~~lVf~~s~~~~~ 346 (515)
..+|..+.. . ......+..............|...+..++.. ..+.++|||++++..++
T Consensus 351 ~~l~~Lrk~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~ 430 (644)
T 1z3i_X 351 SSITSLKKLCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLD 430 (644)
T ss_dssp HHHHHHHHHHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHH
Confidence 000100000 0 00000000000001111224455556555553 35789999999999999
Q ss_pred HHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCc---eEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhh
Q 010196 347 RLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRA 423 (515)
Q Consensus 347 ~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~---~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~ 423 (515)
.+...|...+ +.+..+||+++..+|.++++.|++|+. .+|++|+++++|+|++++++||+||+|+++..|.|++
T Consensus 431 ~l~~~l~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~ 507 (644)
T 1z3i_X 431 LFEKLCRNRR---YLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAM 507 (644)
T ss_dssp HHHHHHHHHT---CCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHH
T ss_pred HHHHHHHHCC---CCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCCCccHHHHHH
Confidence 9999998776 889999999999999999999999875 4899999999999999999999999999999999999
Q ss_pred hhcccCCCCccE--EEEeech--hHHHHHHHHHH
Q 010196 424 GRTARAGQLGRC--FTLLHKD--EVKRFKKLLQK 453 (515)
Q Consensus 424 GR~gR~g~~g~~--~~~~~~~--d~~~~~~~~~~ 453 (515)
||++|.|+...| +.++... |...+.....+
T Consensus 508 gR~~R~Gq~~~v~v~~lv~~~tiEe~i~~~~~~K 541 (644)
T 1z3i_X 508 ARVWRDGQKKTCYIYRLLSTGTIEEKILQRQAHK 541 (644)
T ss_dssp TTSSSTTCCSCEEEEEEEETTSHHHHHHHHHHHH
T ss_pred HhhhhcCCCCceEEEEEEECCCHHHHHHHHHHHH
Confidence 999999988654 4456655 33334444443
No 61
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.4e-32 Score=251.04 Aligned_cols=209 Identities=30% Similarity=0.436 Sum_probs=167.5
Q ss_pred CCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 17 SPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
-|.+...|++. .++++.+.+++.++||.+|+|+|.++++.++. |+|+++.||||+|||++|++|++..+..
T Consensus 14 ~p~p~~~f~~~-----~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~apTGsGKT~~~~l~~~~~l~~ 84 (228)
T 3iuy_A 14 IPKPTCRFKDA-----FQQYPDLLKSIIRVGILKPTPIQSQAWPIILQ----GIDLIVVAQTGTGKTLSYLMPGFIHLDS 84 (228)
T ss_dssp CCCCCCSHHHH-----HTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC-
T ss_pred CCCChhhHhhh-----hccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHh
Confidence 44445556552 14999999999999999999999999988764 8999999999999999999999988764
Q ss_pred c-----ccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc
Q 010196 97 R-----AVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS 171 (515)
Q Consensus 97 ~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 171 (515)
. ...++++||++||++|+.|+.+.++++.. .++.+..++|+.+...... .+..
T Consensus 85 ~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~~~~ 142 (228)
T 3iuy_A 85 QPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSICIYGGRNRNGQIE---------------------DISK 142 (228)
T ss_dssp --------CCCSEEEECSSHHHHHHHHHHHHHHCC-TTCCEEEECC------CHH---------------------HHHS
T ss_pred ccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-cCceEEEEECCCChHHHHH---------------------HhcC
Confidence 2 12567899999999999999999999863 4788888888876544332 2346
Q ss_pred CCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhh
Q 010196 172 AVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (515)
Q Consensus 172 ~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
+++|+|+||+++.+++.. ....+.++++||+||||++.+.++...+..++..+.
T Consensus 143 ~~~iiv~Tp~~l~~~~~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~------------------------- 196 (228)
T 3iuy_A 143 GVDIIIATPGRLNDLQMN-NSVNLRSITYLVIDEADKMLDMEFEPQIRKILLDVR------------------------- 196 (228)
T ss_dssp CCSEEEECHHHHHHHHHT-TCCCCTTCCEEEECCHHHHHHTTCHHHHHHHHHHSC-------------------------
T ss_pred CCCEEEECHHHHHHHHHc-CCcCcccceEEEEECHHHHhccchHHHHHHHHHhCC-------------------------
Confidence 789999999999998876 446688999999999999999999888888887654
Q ss_pred ccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEe
Q 010196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLT 295 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~ 295 (515)
+..+++++|||++.....+....+.+|..+.
T Consensus 197 -------------~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~ 227 (228)
T 3iuy_A 197 -------------PDRQTVMTSATWPDTVRQLALSYLKDPMIVY 227 (228)
T ss_dssp -------------SSCEEEEEESCCCHHHHHHHHTTCSSCEEEE
T ss_pred -------------cCCeEEEEEeeCCHHHHHHHHHHCCCCEEEe
Confidence 2238899999999998999988888887664
No 62
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=2e-32 Score=248.17 Aligned_cols=206 Identities=23% Similarity=0.357 Sum_probs=171.1
Q ss_pred cCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCc
Q 010196 22 SLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRC 101 (515)
Q Consensus 22 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~ 101 (515)
.+|++++ +++.+.+++.++||.+|+++|.++++.++. ++++++++|||+|||++|++|+++.+... ..+
T Consensus 4 ~~f~~~~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-~~~ 72 (219)
T 1q0u_A 4 TQFTRFP------FQPFIIEAIKTLRFYKPTEIQERIIPGALR----GESMVGQSQTGTGKTHAYLLPIMEKIKPE-RAE 72 (219)
T ss_dssp CCGGGSC------CCHHHHHHHHHTTCCSCCHHHHHHHHHHHH----TCCEEEECCSSHHHHHHHHHHHHHHCCTT-SCS
T ss_pred CCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhC-cCC
Confidence 3455554 999999999999999999999999988764 79999999999999999999999988653 245
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhcccc----CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEE
Q 010196 102 LRALVVLPTRDLALQVKDVFAAIAPAV----GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILV 177 (515)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv 177 (515)
.++||++||++|+.|+++.++++.... ++.+..++|+.+..... ..+..+++|+|
T Consensus 73 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---------------------~~~~~~~~Iiv 131 (219)
T 1q0u_A 73 VQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---------------------EKLNVQPHIVI 131 (219)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---------------------CCCSSCCSEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---------------------HHcCCCCCEEE
Confidence 689999999999999999999998766 67888888887644321 12335689999
Q ss_pred eCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhcccccc
Q 010196 178 ATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (515)
Q Consensus 178 ~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
+||+++.+.+.. ..+.+.++++||+||||++.+.++...+..++..++
T Consensus 132 ~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~------------------------------- 179 (219)
T 1q0u_A 132 GTPGRINDFIRE-QALDVHTAHILVVDEADLMLDMGFITDVDQIAARMP------------------------------- 179 (219)
T ss_dssp ECHHHHHHHHHT-TCCCGGGCCEEEECSHHHHHHTTCHHHHHHHHHTSC-------------------------------
T ss_pred eCHHHHHHHHHc-CCCCcCcceEEEEcCchHHhhhChHHHHHHHHHhCC-------------------------------
Confidence 999999998876 446678899999999999998888888888876653
Q ss_pred CCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC
Q 010196 258 GFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (515)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
+..+++++|||++.+...+....+.+|..+....
T Consensus 180 -------~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~ 213 (219)
T 1q0u_A 180 -------KDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLE 213 (219)
T ss_dssp -------TTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC-
T ss_pred -------cccEEEEEecCCCHHHHHHHHHHcCCCeEEEeec
Confidence 1237899999999999889998999998876543
No 63
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=254.41 Aligned_cols=206 Identities=32% Similarity=0.504 Sum_probs=172.0
Q ss_pred CCCCCCCCCCC-CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc---
Q 010196 23 LFEDCPLDHLP-CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--- 98 (515)
Q Consensus 23 ~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--- 98 (515)
+|+..+|..+. .+++.+++++.++||..|+++|.++++.++. ++|++++||||+|||++|++|+++.+....
T Consensus 48 ~~~~~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~ 123 (262)
T 3ly5_A 48 AFEDTSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLE----GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMP 123 (262)
T ss_dssp BSGGGCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHH----TCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCG
T ss_pred ccccCChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCcEEEEccCCCCchHHHHHHHHHHHHhccccc
Confidence 45555555552 4899999999999999999999999988765 799999999999999999999999887632
Q ss_pred cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEe
Q 010196 99 VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVA 178 (515)
Q Consensus 99 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~ 178 (515)
..+.++||++||++|+.|+++.+++++...+..+..++|+......... +..+++|+|+
T Consensus 124 ~~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~Iiv~ 182 (262)
T 3ly5_A 124 RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---------------------LGNGINIIVA 182 (262)
T ss_dssp GGCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---------------------HHHCCSEEEE
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---------------------hcCCCCEEEE
Confidence 2356899999999999999999999998888999999999876655432 3356799999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
||+++.+++.....+.+.++++||+||||++++.+|...+..++..++.
T Consensus 183 Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~------------------------------- 231 (262)
T 3ly5_A 183 TPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPT------------------------------- 231 (262)
T ss_dssp CHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHHSCS-------------------------------
T ss_pred cHHHHHHHHHccCCcccccCCEEEEcChHHHhhhhHHHHHHHHHHhCCC-------------------------------
Confidence 9999999988765567889999999999999999999999988877642
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCC
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHP 291 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~ 291 (515)
..+++++|||++..+..+.+..+..+
T Consensus 232 -------~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 232 -------RRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp -------SSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred -------CCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 23789999999998888888776644
No 64
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=4.6e-32 Score=247.64 Aligned_cols=197 Identities=22% Similarity=0.330 Sum_probs=165.8
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.+.++|.++||..|+++|.++++.++. ++|+++.+|||+|||++|++|++..+... ..+.++||++||++|
T Consensus 30 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L 104 (230)
T 2oxc_A 30 LLSRPVLEGLRAAGFERPSPVQLKAIPLGRC----GLDLIVQAKSGTGKTCVFSTIALDSLVLE-NLSTQILILAPTREI 104 (230)
T ss_dssp TCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-SCSCCEEEECSSHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-CCCceEEEEeCCHHH
Confidence 3999999999999999999999999998764 89999999999999999999999887653 245689999999999
Q ss_pred HHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+.|+++.++++.... ++++..++|+......... ..+++|+|+||+++.+++.. ..
T Consensus 105 ~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----------------------~~~~~Iiv~Tp~~l~~~~~~-~~ 161 (230)
T 2oxc_A 105 AVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTR----------------------LKKCHIAVGSPGRIKQLIEL-DY 161 (230)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHH----------------------TTSCSEEEECHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHh----------------------ccCCCEEEECHHHHHHHHhc-CC
Confidence 999999999998665 7889999998876554322 23579999999999998876 44
Q ss_pred CCCCcceEEEEcchhHHHHHH-HHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 193 FTLEHLCYLVVDETDRLLREA-YQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
+.+.++++||+||||++++.+ |...+..++..++. ..++++
T Consensus 162 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~--------------------------------------~~~~l~ 203 (230)
T 2oxc_A 162 LNPGSIRLFILDEADKLLEEGSFQEQINWIYSSLPA--------------------------------------SKQMLA 203 (230)
T ss_dssp SCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHHSCS--------------------------------------SCEEEE
T ss_pred cccccCCEEEeCCchHhhcCcchHHHHHHHHHhCCC--------------------------------------CCeEEE
Confidence 667889999999999998887 88888888776532 237899
Q ss_pred EEEEecCCchhhhhcccCCCeeEee
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLTT 296 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (515)
+|||++.....+...++.+|..+..
T Consensus 204 lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 204 VSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EEeccCHHHHHHHHHHcCCCeEEEc
Confidence 9999988888888888888877643
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=4.9e-32 Score=243.43 Aligned_cols=195 Identities=26% Similarity=0.469 Sum_probs=166.4
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
+++++.++|.++||.+|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+.+++|++||++|+
T Consensus 10 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~apTGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L~ 84 (206)
T 1vec_A 10 LKRELLMGIFEMGWEKPSPIQEESIPIALS----GRDILARAKNGTGKSGAYLIPLLERLDLK-KDNIQAMVIVPTRELA 84 (206)
T ss_dssp CCHHHHHHHHTTTCCSCCHHHHHHHHHHHT----TCCEEEECCSSSTTHHHHHHHHHHHCCTT-SCSCCEEEECSCHHHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHcc----CCCEEEECCCCCchHHHHHHHHHHHhccc-CCCeeEEEEeCcHHHH
Confidence 999999999999999999999999998865 79999999999999999999999887653 3456899999999999
Q ss_pred HHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCC
Q 010196 115 LQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGF 193 (515)
Q Consensus 115 ~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~ 193 (515)
.|+++.++++.... +..+..++|+.+....... +..+++|+|+||+++.+.+.+ ...
T Consensus 85 ~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~-~~~ 142 (206)
T 1vec_A 85 LQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMR---------------------LDDTVHVVIATPGRILDLIKK-GVA 142 (206)
T ss_dssp HHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHH---------------------TTSCCSEEEECHHHHHHHHHT-TCS
T ss_pred HHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHh---------------------cCCCCCEEEeCHHHHHHHHHc-CCc
Confidence 99999999998776 7889999998876655332 345679999999999998876 445
Q ss_pred CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEE
Q 010196 194 TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLS 273 (515)
Q Consensus 194 ~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~S 273 (515)
.+.++++||+||||++.+.++...+..++..++. ..+++++|
T Consensus 143 ~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------------~~~~l~~S 184 (206)
T 1vec_A 143 KVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPK--------------------------------------NRQILLYS 184 (206)
T ss_dssp CCTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCT--------------------------------------TCEEEEEE
T ss_pred CcccCCEEEEEChHHhHhhCcHHHHHHHHHhCCc--------------------------------------cceEEEEE
Confidence 6788999999999999988888888888776531 23789999
Q ss_pred EEecCCchhhhhcccCCCeeE
Q 010196 274 ATLTQDPNKLAQLDLHHPLFL 294 (515)
Q Consensus 274 aT~~~~~~~~~~~~~~~~~~~ 294 (515)
||++.....+....+.+|..+
T Consensus 185 AT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 185 ATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp SCCCHHHHHHHHHHCSSCEEE
T ss_pred eeCCHHHHHHHHHHcCCCeEe
Confidence 999988888888888888654
No 66
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.7e-32 Score=287.84 Aligned_cols=345 Identities=20% Similarity=0.212 Sum_probs=227.2
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+++|+|.+++.+++.....+.+.|++.+||+|||++++..+...+.... ....+||||| .+|+.||.+++.++++ +
T Consensus 236 ~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-~~~~~LIV~P-~sll~qW~~E~~~~~p--~ 311 (800)
T 3mwy_W 236 ELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-QNGPHIIVVP-LSTMPAWLDTFEKWAP--D 311 (800)
T ss_dssp CCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-CCSCEEEECC-TTTHHHHHHHHHHHST--T
T ss_pred CcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-CCCCEEEEEC-chHHHHHHHHHHHHCC--C
Confidence 6999999999877654556889999999999999997766655544432 3346899999 5889999999999986 4
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
+++...+|............-.... .........++|+|+|++.+...... +....+++||+||||++
T Consensus 312 ~~v~~~~g~~~~r~~~~~~~~~~~~---------~~~~~~~~~~dvvitTy~~l~~~~~~---l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 312 LNCICYMGNQKSRDTIREYEFYTNP---------RAKGKKTMKFNVLLTTYEYILKDRAE---LGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp CCEEECCCSSHHHHHHHHHHSCSCC--------------CCCCCSEEEECTTHHHHTHHH---HHTSEEEEEEETTGGGG
T ss_pred ceEEEEeCCHHHHHHHHHHHhhccc---------cccccccccCCEEEecHHHHHhhHHH---HhcCCcceeehhhhhhh
Confidence 6778888877655444332211000 00011223579999999999765433 22336899999999997
Q ss_pred HHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEEEEEecCCc-hhhhhc--
Q 010196 210 LREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVLSATLTQDP-NKLAQL-- 286 (515)
Q Consensus 210 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~SaT~~~~~-~~~~~~-- 286 (515)
-+. .......+..+.. ...+++|||+..+. .++...
T Consensus 380 kn~--~s~~~~~l~~l~~---------------------------------------~~rl~LTgTPiqN~l~el~~ll~ 418 (800)
T 3mwy_W 380 KNA--ESSLYESLNSFKV---------------------------------------ANRMLITGTPLQNNIKELAALVN 418 (800)
T ss_dssp CCS--SSHHHHHHTTSEE---------------------------------------EEEEEECSCCCSSCSHHHHHHHH
T ss_pred cCc--hhHHHHHHHHhhh---------------------------------------ccEEEeeCCcCCCCHHHHHHHHH
Confidence 321 1112222222111 12355555553211 000000
Q ss_pred ------------------------------ccCCCeeEeeCCccc--cCCcccce-------------------------
Q 010196 287 ------------------------------DLHHPLFLTTGETRY--KLPERLES------------------------- 309 (515)
Q Consensus 287 ------------------------------~~~~~~~~~~~~~~~--~~~~~~~~------------------------- 309 (515)
.+..|..+....... .+|.....
T Consensus 419 fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l 498 (800)
T 3mwy_W 419 FLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSAL 498 (800)
T ss_dssp HHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC--
T ss_pred HhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 000011110000000 00000000
Q ss_pred -------------------------------------------------eEEeccCCCcHHHHHHHHHhc--CCCeEEEE
Q 010196 310 -------------------------------------------------YKLICESKLKPLYLVALLQSL--GEEKCIVF 338 (515)
Q Consensus 310 -------------------------------------------------~~~~~~~~~k~~~l~~~l~~~--~~~~~lVf 338 (515)
.........|...+..++... .+.++|||
T Consensus 499 ~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIF 578 (800)
T 3mwy_W 499 TAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIF 578 (800)
T ss_dssp --------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEE
T ss_pred hhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEE
Confidence 000011345666777777754 46799999
Q ss_pred cCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCc---eEEEecCCccccCCCCCCCEEEEccCCCC
Q 010196 339 TSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI---QVLVSSDAMTRGMDVEGVNNVVNYDKPAY 415 (515)
Q Consensus 339 ~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~---~vLv~T~~~~~GiDi~~v~~VI~~~~p~s 415 (515)
|.....++.+...|...+ +.+..+||+++..+|.++++.|++++. .+|++|.++++|+|++.+++||+||+|+|
T Consensus 579 sq~~~~ld~L~~~L~~~g---~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~wn 655 (800)
T 3mwy_W 579 SQMVRMLDILGDYLSIKG---INFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDWN 655 (800)
T ss_dssp ESCHHHHHHHHHHHHHHT---CCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCSC
T ss_pred echHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccceEEEecCCCC
Confidence 999999999999998776 889999999999999999999998654 48999999999999999999999999999
Q ss_pred hhhhHHhhhhcccCCCCccE--EEEeech--hHHHHHHHHHHh
Q 010196 416 IKTYIHRAGRTARAGQLGRC--FTLLHKD--EVKRFKKLLQKA 454 (515)
Q Consensus 416 ~~~~~Qr~GR~gR~g~~g~~--~~~~~~~--d~~~~~~~~~~~ 454 (515)
+..+.||+||++|.|+...| +.|+... |...+....++.
T Consensus 656 p~~~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiEe~i~~~~~~K~ 698 (800)
T 3mwy_W 656 PQADLQAMARAHRIGQKNHVMVYRLVSKDTVEEEVLERARKKM 698 (800)
T ss_dssp SHHHHHHHTTTSCSSCCSCEEEEEEEETTSHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHHHHHH
Confidence 99999999999999987544 5566665 444455554443
No 67
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.3e-32 Score=250.70 Aligned_cols=206 Identities=27% Similarity=0.425 Sum_probs=165.7
Q ss_pred cccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhccc
Q 010196 20 DVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (515)
Q Consensus 20 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~ 99 (515)
+..+|+++. +++.+.++|.++||..|+++|.++++.++. ++|+++.+|||+|||++|++|+++.+... .
T Consensus 28 ~~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~----~~~~li~apTGsGKT~~~~l~~l~~l~~~-~ 96 (237)
T 3bor_A 28 IVDNFDDMN------LKESLLRGIYAYGFEKPSAIQQRAIIPCIK----GYDVIAQAQSGTGKTATFAISILQQLEIE-F 96 (237)
T ss_dssp CCCSGGGSC------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEECCCSSHHHHHHHHHHHHHHCCTT-S
T ss_pred ccCChhhcC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHHhc-C
Confidence 344566664 999999999999999999999999988764 79999999999999999999999988653 2
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhcc-CCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQS-AVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~Ivv~ 178 (515)
.+.++||++||++|+.|+++.+++++...++.+..++|+......... +.. .++|+|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------l~~~~~~Ilv~ 155 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQK---------------------LQAEAPHIVVG 155 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------------------------CCCSEEEE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHH---------------------HhcCCCCEEEE
Confidence 456899999999999999999999988888888888888765443322 223 3799999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccC
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERG 258 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (515)
||++|.+++.. ..+.+.++++||+||||++.+.++...+..++..++
T Consensus 156 Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~~~-------------------------------- 202 (237)
T 3bor_A 156 TPGRVFDMLNR-RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQKLN-------------------------------- 202 (237)
T ss_dssp CHHHHHHHHHT-TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSC--------------------------------
T ss_pred CHHHHHHHHHh-CCcCcccCcEEEECCchHhhccCcHHHHHHHHHhCC--------------------------------
Confidence 99999999876 446678899999999999999888888888776653
Q ss_pred CCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEee
Q 010196 259 FKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTT 296 (515)
Q Consensus 259 ~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~ 296 (515)
+..+++++|||++.+...+....+.+|..+..
T Consensus 203 ------~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v 234 (237)
T 3bor_A 203 ------TSIQVVLLSATMPTDVLEVTKKFMRDPIRILV 234 (237)
T ss_dssp ------TTCEEEEECSSCCHHHHHHHHHHCSSCEEEC-
T ss_pred ------CCCeEEEEEEecCHHHHHHHHHHCCCCEEEEe
Confidence 22388999999998888888888888887754
No 68
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=2.6e-31 Score=241.23 Aligned_cols=198 Identities=24% Similarity=0.360 Sum_probs=165.4
Q ss_pred CCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 34 CLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 34 ~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
++++.+.++|.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|++..+... ..+.++||++||++|
T Consensus 20 ~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~~~~~-~~~~~~lil~Pt~~L 94 (220)
T 1t6n_A 20 LLKPELLRAIVDCGFEHPSEVQHECIPQAIL----GMDVLCQAKSGMGKTAVFVLATLQQLEPV-TGQVSVLVMCHTREL 94 (220)
T ss_dssp CCCHHHHHHHHHTTCCCCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCC-TTCCCEEEECSCHHH
T ss_pred CCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCchhhhhhHHHHHhhhcc-CCCEEEEEEeCCHHH
Confidence 3999999999999999999999999998865 78999999999999999999999887653 234589999999999
Q ss_pred HHHHHHHHHHhcccc-CcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 114 ALQVKDVFAAIAPAV-GLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 114 ~~q~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
+.|+++.++++.... ++++..++|+.+.......+. ...++|+|+||+++.+++.. ..
T Consensus 95 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~--------------------~~~~~i~v~T~~~l~~~~~~-~~ 153 (220)
T 1t6n_A 95 AFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLK--------------------KNCPHIVVGTPGRILALARN-KS 153 (220)
T ss_dssp HHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHH--------------------HSCCSEEEECHHHHHHHHHT-TS
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHh--------------------cCCCCEEEeCHHHHHHHHHh-CC
Confidence 999999999998766 789999999987665543321 23469999999999998876 44
Q ss_pred CCCCcceEEEEcchhHHHH-HHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEE
Q 010196 193 FTLEHLCYLVVDETDRLLR-EAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMV 271 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (515)
+.+.++++||+||||++++ .++...+..++...+ +..++++
T Consensus 154 ~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~ 195 (220)
T 1t6n_A 154 LNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTP--------------------------------------HEKQVMM 195 (220)
T ss_dssp SCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSC--------------------------------------SSSEEEE
T ss_pred CCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCC--------------------------------------CcCeEEE
Confidence 6688999999999999986 577777777765543 1238899
Q ss_pred EEEEecCCchhhhhcccCCCeeEe
Q 010196 272 LSATLTQDPNKLAQLDLHHPLFLT 295 (515)
Q Consensus 272 ~SaT~~~~~~~~~~~~~~~~~~~~ 295 (515)
+|||++.....+....+.+|..+.
T Consensus 196 ~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 196 FSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999999998888888887653
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=2.6e-32 Score=253.31 Aligned_cols=213 Identities=27% Similarity=0.442 Sum_probs=175.2
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc--
Q 010196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA-- 98 (515)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-- 98 (515)
..+|+++. +++.+.++|..+||.+|+|+|.++++.++. ++|++++||||+|||++|++|++..+....
T Consensus 22 ~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~----~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~ 91 (253)
T 1wrb_A 22 IENFDELK------LDPTIRNNILLASYQRPTPIQKNAIPAILE----HRDIMACAQTGSGKTAAFLIPIINHLVCQDLN 91 (253)
T ss_dssp CCSSGGGS------CCCSTTTTTTTTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-
T ss_pred cCCHhhCC------CCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCChHHHHHHHHHHHHHHhhccc
Confidence 34455554 888999999999999999999999998865 899999999999999999999999886532
Q ss_pred ------cCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccC
Q 010196 99 ------VRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA 172 (515)
Q Consensus 99 ------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 172 (515)
..++++||++||++|+.|+++.+++++...++.+..++|+.+...... .+..+
T Consensus 92 ~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---------------------~~~~~ 150 (253)
T 1wrb_A 92 QQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIR---------------------EVQMG 150 (253)
T ss_dssp -----CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHH---------------------HHSSC
T ss_pred cccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH---------------------HhCCC
Confidence 234689999999999999999999998888889999999887665543 23457
Q ss_pred CcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhc
Q 010196 173 VDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRR 252 (515)
Q Consensus 173 ~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (515)
++|+|+||++|.+++.. ..+.+.++++||+||||++++.+|...+..++..+.....
T Consensus 151 ~~Ivv~Tp~~l~~~l~~-~~~~~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~---------------------- 207 (253)
T 1wrb_A 151 CHLLVATPGRLVDFIEK-NKISLEFCKYIVLDEADRMLDMGFEPQIRKIIEESNMPSG---------------------- 207 (253)
T ss_dssp CSEEEECHHHHHHHHHT-TSBCCTTCCEEEEETHHHHHHTTCHHHHHHHHHSSCCCCG----------------------
T ss_pred CCEEEECHHHHHHHHHc-CCCChhhCCEEEEeCHHHHHhCchHHHHHHHHhhccCCCC----------------------
Confidence 89999999999999877 3456788999999999999999998888888875321110
Q ss_pred cccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCCc
Q 010196 253 CGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGET 299 (515)
Q Consensus 253 ~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~~ 299 (515)
...+++++|||++..+..+....+.+|..+..+..
T Consensus 208 ------------~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 242 (253)
T 1wrb_A 208 ------------INRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRV 242 (253)
T ss_dssp ------------GGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC--
T ss_pred ------------CCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCC
Confidence 12378999999998888888888888988876543
No 70
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=252.61 Aligned_cols=220 Identities=27% Similarity=0.464 Sum_probs=174.0
Q ss_pred CCCccccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 16 RSPVDVSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
+.|.++.+|+++. +. .++++.+.+++.++||..|+|+|.++++.++. ++++++.||||+|||++|++|++..+.
T Consensus 19 ~~p~~~~~f~~l~-~~-~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~l~~a~TGsGKT~~~~l~~l~~l~ 92 (245)
T 3dkp_A 19 DLPDPIATFQQLD-QE-YKINSRLLQNILDAGFQMPTPIQMQAIPVMLH----GRELLASAPTGSGKTLAFSIPILMQLK 92 (245)
T ss_dssp SCCCCCSSHHHHH-HH-HCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHHC
T ss_pred CCCCcccCHHHhh-hc-cCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhC----CCCEEEECCCCCcHHHHHHHHHHHHHh
Confidence 3455556666551 01 14999999999999999999999999988765 899999999999999999999999987
Q ss_pred hcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcE
Q 010196 96 NRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDI 175 (515)
Q Consensus 96 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~I 175 (515)
.....+.++||++||++|+.|+++.+++++...++.+..+.|+....... ......+++|
T Consensus 93 ~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~I 152 (245)
T 3dkp_A 93 QPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKF--------------------GPKSSKKFDI 152 (245)
T ss_dssp SCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTT--------------------STTSCCCCCE
T ss_pred hcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHh--------------------hhhhcCCCCE
Confidence 65556678999999999999999999999988888888877664322110 0122456899
Q ss_pred EEeCChHHHHHHhcCc-CCCCCcceEEEEcchhHHHHH---HHHhHHHHHHhhcccCcccccCCccccccccccchhhhh
Q 010196 176 LVATPGRLMDHINATR-GFTLEHLCYLVVDETDRLLRE---AYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIR 251 (515)
Q Consensus 176 vv~Tp~~l~~~l~~~~-~~~~~~~~~vViDEah~l~~~---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (515)
+|+||++|.+++.... .+.+.++++||+||||++.++ ++...+..++.....
T Consensus 153 ~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~------------------------ 208 (245)
T 3dkp_A 153 LVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTS------------------------ 208 (245)
T ss_dssp EEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCC------------------------
T ss_pred EEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCC------------------------
Confidence 9999999999987743 456889999999999999885 455555555544321
Q ss_pred ccccccCCCCCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC
Q 010196 252 RCGVERGFKDKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (515)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
+..+++++|||++.++..+....+.+|..+..+.
T Consensus 209 -------------~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~ 242 (245)
T 3dkp_A 209 -------------HKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGA 242 (245)
T ss_dssp -------------TTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC
T ss_pred -------------CCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCC
Confidence 2237899999999999999999999998887754
No 71
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.98 E-value=8.5e-32 Score=245.19 Aligned_cols=206 Identities=26% Similarity=0.439 Sum_probs=166.5
Q ss_pred ccCCCCCCCCCCCCCCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccC
Q 010196 21 VSLFEDCPLDHLPCLDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVR 100 (515)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~ 100 (515)
...|+++. +++.+.+.+.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+... ..
T Consensus 13 ~~~f~~l~------l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~----~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-~~ 81 (224)
T 1qde_A 13 VYKFDDME------LDENLLRGVFGYGFEEPSAIQQRAIMPIIE----GHDVLAQAQSGTGKTGTFSIAALQRIDTS-VK 81 (224)
T ss_dssp CCCGGGGT------CCHHHHHHHHHHTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSSHHHHHHHHHHHHCCTT-CC
T ss_pred cCChhhcC------CCHHHHHHHHHCCCCCCcHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHhcc-CC
Confidence 44566664 999999999999999999999999998865 78999999999999999999999988654 34
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
+.++||++|+++|+.|+++.++++....++++..++|+.+....... + ..++|+|+||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---------------------~-~~~~iiv~Tp 139 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---------------------L-RDAQIVVGTP 139 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------------------------C-TTCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---------------------C-CCCCEEEECH
Confidence 56899999999999999999999988888999999998765544221 1 2379999999
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCC
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFK 260 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (515)
++|.+.+.+ ....+.++++||+||||++.+.++...+..++..++.
T Consensus 140 ~~l~~~~~~-~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~--------------------------------- 185 (224)
T 1qde_A 140 GRVFDNIQR-RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLLPP--------------------------------- 185 (224)
T ss_dssp HHHHHHHHT-TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHSCT---------------------------------
T ss_pred HHHHHHHHh-CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhCCc---------------------------------
Confidence 999998876 4466788999999999999998888888888766531
Q ss_pred CCCCCceeeEEEEEEecCCchhhhhcccCCCeeEeeCC
Q 010196 261 DKPYPRLVKMVLSATLTQDPNKLAQLDLHHPLFLTTGE 298 (515)
Q Consensus 261 ~~~~~~~~~i~~SaT~~~~~~~~~~~~~~~~~~~~~~~ 298 (515)
..+++++|||++.....+....+.+|..+....
T Consensus 186 -----~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~ 218 (224)
T 1qde_A 186 -----TTQVVLLSATMPNDVLEVTTKFMRNPVRILVKK 218 (224)
T ss_dssp -----TCEEEEEESSCCHHHHHHHHHHCSSCEEEC---
T ss_pred -----cCeEEEEEeecCHHHHHHHHHHCCCCEEEEecC
Confidence 237899999999888888888888888776543
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.98 E-value=5.7e-32 Score=291.00 Aligned_cols=332 Identities=17% Similarity=0.170 Sum_probs=214.2
Q ss_pred HHHHHHHHhCC-------CCCcchhhHHHHHHHhCCCC----------CCCCEEEECCCCchhHHHhHHHHHHHhhhccc
Q 010196 37 PRLKVALQNMG-------ISSLFPVQVAVWQETIGPGL----------FERDLCINSPTGSGKTLSYALPIVQTLSNRAV 99 (515)
Q Consensus 37 ~~l~~~l~~~~-------~~~~~~~Q~~a~~~~~~~~~----------~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~ 99 (515)
+.+++.+..+- ...|||+|.+|++.++..+. .+++++++++||||||+++ ++++..+... .
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-~ 328 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-D 328 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-T
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-C
Confidence 45666666642 23599999999998875321 2478999999999999997 5666555432 2
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~ 178 (515)
...++|||||+++|+.|+.+.+..+.+. .+.++.+..... ..+ ..+++|+|+
T Consensus 329 ~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~---------------------~~L~~~~~~IiVt 381 (1038)
T 2w00_A 329 FIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLK---------------------RNLDKDDNKIIVT 381 (1038)
T ss_dssp TCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHH---------------------HHHHCSSCCEEEE
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHH---------------------HHhcCCCCCEEEE
Confidence 3358999999999999999999988653 123333332222 222 245799999
Q ss_pred CChHHHHHHhcCcCC-CCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhcccccc
Q 010196 179 TPGRLMDHINATRGF-TLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVER 257 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~-~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (515)
||++|..++.....+ .+....+||+||||++....+ ...+...++
T Consensus 382 Tiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~~~---~~~I~~~~p------------------------------- 427 (1038)
T 2w00_A 382 TIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFGEA---QKNLKKKFK------------------------------- 427 (1038)
T ss_dssp EHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHHHH---HHHHHHHCS-------------------------------
T ss_pred EHHHHHHHHhcccchhccccccEEEEEccchhcchHH---HHHHHHhCC-------------------------------
Confidence 999999887653212 345788999999999865433 334444332
Q ss_pred CCCCCCCCceeeEEEEEEecCCch-----hhhh----------------cccCCCeeEeeCCccccC-----Ccc-----
Q 010196 258 GFKDKPYPRLVKMVLSATLTQDPN-----KLAQ----------------LDLHHPLFLTTGETRYKL-----PER----- 306 (515)
Q Consensus 258 ~~~~~~~~~~~~i~~SaT~~~~~~-----~~~~----------------~~~~~~~~~~~~~~~~~~-----~~~----- 306 (515)
..+.+++|||+..... .... .....|..+........+ ...
T Consensus 428 --------~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~ 499 (1038)
T 2w00_A 428 --------RYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLS 499 (1038)
T ss_dssp --------SEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHH
T ss_pred --------cccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHH
Confidence 2378999999875321 1111 111112221111000000 000
Q ss_pred -cceeEEeccCCCcHHHHHH-HHHhc-----------CCCeEEEEcCChhhHHHHHHHHhhcCC---------CceeE-E
Q 010196 307 -LESYKLICESKLKPLYLVA-LLQSL-----------GEEKCIVFTSSVESTHRLCTLLNHFGE---------LRIKI-K 363 (515)
Q Consensus 307 -~~~~~~~~~~~~k~~~l~~-~l~~~-----------~~~~~lVf~~s~~~~~~l~~~L~~~~~---------~~~~v-~ 363 (515)
+...... ....+...+.. ++... .+.++||||+++.+|..+++.|...+. .+.++ .
T Consensus 500 ~i~~~~~l-~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~av 578 (1038)
T 2w00_A 500 AAENQQAF-LHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIAT 578 (1038)
T ss_dssp HTCSTTTT-TCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEE
T ss_pred HHHHHHHh-cCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEE
Confidence 0000000 11122223222 22211 245899999999999999999977541 11333 4
Q ss_pred EccCc----------c----------CH-----------------------------HHHHHHHHHHhcCCceEEEecCC
Q 010196 364 EYSGL----------Q----------RQ-----------------------------SVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 364 ~~~~~----------~----------~~-----------------------------~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
++|++ + ++ .+|..++++|++|+++|||+|++
T Consensus 579 v~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~ 658 (1038)
T 2w00_A 579 IFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGM 658 (1038)
T ss_dssp ECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESST
T ss_pred EEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcch
Confidence 56642 2 22 24889999999999999999999
Q ss_pred ccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCC----ccEEEEeec
Q 010196 395 MTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQL----GRCFTLLHK 441 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~----g~~~~~~~~ 441 (515)
+.+|+|+|.+ .|+.+|.|.+...|+|++||++|.+.. |.++.|+..
T Consensus 659 lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 659 FLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp TSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred HHhCcCcccc-cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 9999999999 678899999999999999999998753 667777653
No 73
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=4.6e-31 Score=237.34 Aligned_cols=196 Identities=33% Similarity=0.499 Sum_probs=164.9
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc--cCcccEEEEcccHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRD 112 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt~~ 112 (515)
+++.+.+++.++||..|+|+|.++++.++. ++++++.+|||+|||++|++|+++.+.... ..+++++|++|+++
T Consensus 8 l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~----~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~ 83 (207)
T 2gxq_A 8 LKPEILEALHGRGLTTPTPIQAAALPLALE----GKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRE 83 (207)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHT----TCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHcC----CCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHH
Confidence 999999999999999999999999998865 799999999999999999999999886421 24568999999999
Q ss_pred HHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC
Q 010196 113 LALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG 192 (515)
Q Consensus 113 L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~ 192 (515)
|+.|+++.++++... +++..++|+......... +..+++|+|+||+++.+++.. ..
T Consensus 84 L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~---------------------~~~~~~i~v~T~~~l~~~~~~-~~ 139 (207)
T 2gxq_A 84 LALQVASELTAVAPH--LKVVAVYGGTGYGKQKEA---------------------LLRGADAVVATPGRALDYLRQ-GV 139 (207)
T ss_dssp HHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHH---------------------HHHCCSEEEECHHHHHHHHHH-TS
T ss_pred HHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHH---------------------hhCCCCEEEECHHHHHHHHHc-CC
Confidence 999999999999764 677888888775544322 335679999999999998877 44
Q ss_pred CCCCcceEEEEcchhHHHHHHHHhHHHHHHhhcccCcccccCCccccccccccchhhhhccccccCCCCCCCCceeeEEE
Q 010196 193 FTLEHLCYLVVDETDRLLREAYQAWLPTVLQLTRSDNENRFSDASTFLPSAFGSLKTIRRCGVERGFKDKPYPRLVKMVL 272 (515)
Q Consensus 193 ~~~~~~~~vViDEah~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 272 (515)
+.+.++++||+||||++.+.++...+..++...+ +..+++++
T Consensus 140 ~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~--------------------------------------~~~~~i~~ 181 (207)
T 2gxq_A 140 LDLSRVEVAVLDEADEMLSMGFEEEVEALLSATP--------------------------------------PSRQTLLF 181 (207)
T ss_dssp SCCTTCSEEEEESHHHHHHTTCHHHHHHHHHTSC--------------------------------------TTSEEEEE
T ss_pred cchhhceEEEEEChhHhhccchHHHHHHHHHhCC--------------------------------------ccCeEEEE
Confidence 6688899999999999998888888888876543 12378999
Q ss_pred EEEecCCchhhhhcccCCCeeEee
Q 010196 273 SATLTQDPNKLAQLDLHHPLFLTT 296 (515)
Q Consensus 273 SaT~~~~~~~~~~~~~~~~~~~~~ 296 (515)
|||++.....+....+.+|..+..
T Consensus 182 SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 182 SATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp CSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred EEecCHHHHHHHHHHcCCCeEEEc
Confidence 999998888888888888887654
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.96 E-value=2.6e-27 Score=242.10 Aligned_cols=131 Identities=25% Similarity=0.289 Sum_probs=110.0
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
+|+ .|+++|..+++.++. |+ +.++.||+|||++|.+|++..... +..++|++||++||.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~Llq----G~--IaeakTGeGKTLvf~Lp~~L~aL~----G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHE----GK--IAEMKTGEGKTLVATLAVALNALT----GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHT----TS--EEECCSTHHHHHHHHHHHHHHHTT----CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccC----Cc--eeeccCCCchHHHHHHHHHHHHHh----CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 799 999999999988754 66 999999999999999999644433 3379999999999999999999999
Q ss_pred cccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHH-HHHHhcCc-----CCCCC---
Q 010196 126 PAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRL-MDHINATR-----GFTLE--- 196 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l-~~~l~~~~-----~~~~~--- 196 (515)
..+++++++++|+.+..... ...+++|+|+||++| ++++.... .+.++
T Consensus 145 ~~lGLsv~~i~Gg~~~~~r~-----------------------~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~ 201 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTPAERR-----------------------KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDH 201 (997)
T ss_dssp HTTTCCEEECCTTCCHHHHH-----------------------HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSS
T ss_pred HhcCCeEEEEeCCCCHHHHH-----------------------HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCC
Confidence 99999999999998754332 123579999999999 78887642 24566
Q ss_pred cceEEEEcchhHHH
Q 010196 197 HLCYLVVDETDRLL 210 (515)
Q Consensus 197 ~~~~vViDEah~l~ 210 (515)
.+.++|+||+|.|+
T Consensus 202 ~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 202 PLHYAIIDEVDSIL 215 (997)
T ss_dssp SSCEEEETTHHHHT
T ss_pred CcceEEEechHHHH
Confidence 89999999999987
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.96 E-value=9.5e-28 Score=250.20 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=110.7
Q ss_pred CCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC
Q 010196 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
..+...+...+... .+.++||||+|+..++.+++.|.+.+ +.+..+||++++.+|.++++.|+.|+.+|||||++
T Consensus 422 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~ 498 (664)
T 1c4o_A 422 ENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHG---IRARYLHHELDAFKRQALIRDLRLGHYDCLVGINL 498 (664)
T ss_dssp TTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcC---CCceeecCCCCHHHHHHHHHHhhcCCceEEEccCh
Confidence 34455555555432 57899999999999999999999876 78899999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEccC-----CCChhhhHHhhhhcccCCCCccEEEEeechhHH
Q 010196 395 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVK 445 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~ 445 (515)
+++|+|+|++++||+++. |.+..+|+||+||+||.+ .|.+++|+++.+..
T Consensus 499 l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~~-~G~~i~~~~~~~~~ 553 (664)
T 1c4o_A 499 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA-RGEVWLYADRVSEA 553 (664)
T ss_dssp CCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTST-TCEEEEECSSCCHH
T ss_pred hhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcCC-CCEEEEEEcCCCHH
Confidence 999999999999999997 899999999999999995 89999999876543
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.95 E-value=1.2e-27 Score=205.44 Aligned_cols=150 Identities=26% Similarity=0.448 Sum_probs=140.1
Q ss_pred CcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhc
Q 010196 304 PERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFRE 383 (515)
Q Consensus 304 ~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~ 383 (515)
...+.++++.+....|...|..++....++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++
T Consensus 7 ~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~ 83 (163)
T 2hjv_A 7 TRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLG---YPCDKIHGGMIQEDRFDVMNEFKR 83 (163)
T ss_dssp CCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHT
T ss_pred cccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHHc
Confidence 34577788888888999999999998888899999999999999999998866 889999999999999999999999
Q ss_pred CCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 384 GKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 384 g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
|+.+|||||+++++|+|+|++++||+|++|+++..|+||+||+||.|+.|.+++|+.+.|...+.++.+....
T Consensus 84 g~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 156 (163)
T 2hjv_A 84 GEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLADIEEYIGF 156 (163)
T ss_dssp TSCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHHHHHHHTS
T ss_pred CCCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998877643
No 77
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.95 E-value=8.6e-27 Score=242.88 Aligned_cols=126 Identities=24% Similarity=0.294 Sum_probs=111.1
Q ss_pred CCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC
Q 010196 317 KLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA 394 (515)
Q Consensus 317 ~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~ 394 (515)
..+...+...+... .+.++||||+|+..++.+++.|.+.+ +.+..+||++++.+|.++++.|+.|+.+|||||++
T Consensus 428 ~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~g---i~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 428 EGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEIG---IKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp TTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred cchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhcC---CCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 34445555545432 46799999999999999999999876 78899999999999999999999999999999999
Q ss_pred ccccCCCCCCCEEEEccC-----CCChhhhHHhhhhcccCCCCccEEEEeechhHHH
Q 010196 395 MTRGMDVEGVNNVVNYDK-----PAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKR 446 (515)
Q Consensus 395 ~~~GiDi~~v~~VI~~~~-----p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~ 446 (515)
+++|+|+|++++||+++. |.+..+|+||+||+||. ..|.|++|+++.+...
T Consensus 505 l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~-~~G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 505 LREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN-AEGRVIMYADKITKSM 560 (661)
T ss_dssp CSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS-TTCEEEEECSSCCHHH
T ss_pred hhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC-CCCEEEEEEeCCCHHH
Confidence 999999999999999997 99999999999999998 6899999998865433
No 78
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.95 E-value=5.7e-27 Score=210.01 Aligned_cols=147 Identities=30% Similarity=0.445 Sum_probs=135.5
Q ss_pred cceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCc
Q 010196 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (515)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~ 386 (515)
+.+..+.+....|...+..++....++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.
T Consensus 6 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 6 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp BCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHT---CCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred eeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 44566667788999999999998889999999999999999999998876 889999999999999999999999999
Q ss_pred eEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 387 ~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
+|||||+++++|+|+|++++||+|++|++...|+||+||+||.|+.|.|++|+++.+...+..+.+....
T Consensus 83 ~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~ 152 (212)
T 3eaq_A 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 152 (212)
T ss_dssp CEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSS
T ss_pred eEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999988877654
No 79
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.95 E-value=4.2e-27 Score=203.64 Aligned_cols=148 Identities=26% Similarity=0.395 Sum_probs=135.5
Q ss_pred cccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC
Q 010196 305 ERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (515)
Q Consensus 305 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g 384 (515)
..+.++++.+....|...|..++......++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN---FPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcC---CCEEEEECCCCHHHHHHHHHHHHCC
Confidence 4577888888888999999999998888999999999999999999998866 8899999999999999999999999
Q ss_pred CceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeech-hHHHHHHHHHHhc
Q 010196 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EVKRFKKLLQKAD 455 (515)
Q Consensus 385 ~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-d~~~~~~~~~~~~ 455 (515)
+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +...++.+.+...
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~ 152 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 152 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999876 4566667766543
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.95 E-value=4.1e-27 Score=204.82 Aligned_cols=150 Identities=29% Similarity=0.501 Sum_probs=134.4
Q ss_pred CcccceeEEeccCCC-cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHh
Q 010196 304 PERLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFR 382 (515)
Q Consensus 304 ~~~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~ 382 (515)
+..+.++++.+.... |...|..++.....+++||||+++..++.++..|...+ ..+..+||+|++.+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDG---HQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTT---CCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHH
Confidence 346777777777655 99999999998888899999999999999999999766 88999999999999999999999
Q ss_pred cCCceEEEecCCccccCCCCCCCEEEEccCC------CChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 383 EGKIQVLVSSDAMTRGMDVEGVNNVVNYDKP------AYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 383 ~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p------~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
+|+.+|||||+++++|+|+|++++||+||+| .+..+|+||+||+||.|+.|.+++|+.+.+...+.++.+....
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPSLMKIQDHFNS 161 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHHHHHHHHHHHTC
T ss_pred cCCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 8999999999999999999999999999999999988887654
No 81
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.95 E-value=6e-27 Score=201.65 Aligned_cols=148 Identities=27% Similarity=0.447 Sum_probs=131.5
Q ss_pred ccceeEEeccCCC-cHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcC
Q 010196 306 RLESYKLICESKL-KPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREG 384 (515)
Q Consensus 306 ~~~~~~~~~~~~~-k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g 384 (515)
.+.++++.+.... |...|..++.....+++||||+++..++.++..|...+ +.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDK---FTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcC---CCEEEEECCCCHHHHHHHHHHHHcC
Confidence 3566677776666 99999999998888999999999999999999998765 7899999999999999999999999
Q ss_pred CceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 385 KIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 385 ~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
+.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.|++|+++.+...+..+.+.+..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~ 151 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMRELEKFYST 151 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETTTHHHHHHHHHHSSC
T ss_pred CCEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcchHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999999999999999999999999998888776544
No 82
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.94 E-value=1.1e-26 Score=204.02 Aligned_cols=164 Identities=26% Similarity=0.349 Sum_probs=128.7
Q ss_pred cccCCCeeEeeCCccccCCcccceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEc
Q 010196 286 LDLHHPLFLTTGETRYKLPERLESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEY 365 (515)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~ 365 (515)
.++.+|..+..+... .....+.+.+..+....|...|..++... ++++||||+++..++.+++.|...+ +.+..+
T Consensus 10 ~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g---~~~~~l 84 (191)
T 2p6n_A 10 GVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKG---VEAVAI 84 (191)
T ss_dssp -------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHT---CCEEEE
T ss_pred cccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcC---CcEEEE
Confidence 345667666655433 33456777777788888999999998865 4689999999999999999998776 889999
Q ss_pred cCccCHHHHHHHHHHHhcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeech-hH
Q 010196 366 SGLQRQSVRSKTLKAFREGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKD-EV 444 (515)
Q Consensus 366 ~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-d~ 444 (515)
||++++.+|..+++.|++|+.+|||||+++++|+|+|++++||+||+|+++..|+||+||+||.|+.|.+++|+++. +.
T Consensus 85 hg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~ 164 (191)
T 2p6n_A 85 HGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDE 164 (191)
T ss_dssp CTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCH
T ss_pred eCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876 55
Q ss_pred HHHHHHHHHh
Q 010196 445 KRFKKLLQKA 454 (515)
Q Consensus 445 ~~~~~~~~~~ 454 (515)
..+..+.+.+
T Consensus 165 ~~~~~l~~~l 174 (191)
T 2p6n_A 165 SVLMDLKALL 174 (191)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 83
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.94 E-value=8.2e-27 Score=204.10 Aligned_cols=150 Identities=29% Similarity=0.489 Sum_probs=124.6
Q ss_pred CCcccceeEEeccCCCcHHHHHHHHHhc-CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHH
Q 010196 303 LPERLESYKLICESKLKPLYLVALLQSL-GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF 381 (515)
Q Consensus 303 ~~~~~~~~~~~~~~~~k~~~l~~~l~~~-~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f 381 (515)
.+..+.+.+..+....|...|..++... .+.++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|
T Consensus 16 ~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g---~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 16 TSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEG---YACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTT---CCEEEEC--------CHHHHHH
T ss_pred CCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcC---CceEEEeCCCCHHHHHHHHHHH
Confidence 3456778888888889999999999876 57899999999999999999998865 8899999999999999999999
Q ss_pred hcCCceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 382 REGKIQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 382 ~~g~~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
++|+.+|||||+++++|+|+|++++||+||+|+++.+|+||+||+||.|+.|.|++|+++.+...+.++.+.+.
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~l~~~l~ 166 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNERNINITKDLLDLLV 166 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGGGGGGHHHHHHHHH
T ss_pred HcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888888877664
No 84
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.94 E-value=1.4e-25 Score=210.22 Aligned_cols=147 Identities=29% Similarity=0.445 Sum_probs=133.2
Q ss_pred cceeEEeccCCCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCc
Q 010196 307 LESYKLICESKLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKI 386 (515)
Q Consensus 307 ~~~~~~~~~~~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~ 386 (515)
+.++++.+....|...+..++....++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g---~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLG---HPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTT---CCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCC---CCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 45777888889999999999998889999999999999999999998765 889999999999999999999999999
Q ss_pred eEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhcC
Q 010196 387 QVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKADN 456 (515)
Q Consensus 387 ~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~~ 456 (515)
+|||||+++++|+|+|++++||+|++|++...|+||+||+||.|+.|.|++|+++.+...++.+.+....
T Consensus 80 ~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~ 149 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGR 149 (300)
T ss_dssp CEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTC
T ss_pred eEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999999999888888777654
No 85
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.93 E-value=4.7e-25 Score=225.51 Aligned_cols=152 Identities=20% Similarity=0.174 Sum_probs=93.2
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
.|| +|||+|.+++..+...+..+++++++||||+|||++|++|++.. +.+++|++||++|+.|+.+++..+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 467 89999999988777666678999999999999999999998743 348999999999999999988774
Q ss_pred cccCcEEEEeecCCchHHH--HHH----Hhc--------------cC------cc-cccccCCchhHHHhhccCCcEEEe
Q 010196 126 PAVGLSVGLAVGQSSIADE--ISE----LIK--------------RP------KL-EAGICYDPEDVLQELQSAVDILVA 178 (515)
Q Consensus 126 ~~~~~~v~~~~g~~~~~~~--~~~----~~~--------------~~------~~-~~~~~~~~~~~~~~l~~~~~Ivv~ 178 (515)
++++..+.|....... ... ..+ .. .. .....| +....+.....++|+|+
T Consensus 75 ---~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~C-py~~~r~~~~~adiVV~ 150 (540)
T 2vl7_A 75 ---GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYC-PYYSLRANLKDKDVIAM 150 (540)
T ss_dssp ---TCCEEEC----------------------------------------------------------CTTGGGCSEEEE
T ss_pred ---CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCC-hHHHHHHHhhcCCEEEE
Confidence 5666666554321000 000 000 00 00 000000 11112333456799999
Q ss_pred CChHHHHHHhcCcCC------CCCcceEEEEcchhHHH
Q 010196 179 TPGRLMDHINATRGF------TLEHLCYLVVDETDRLL 210 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~------~~~~~~~vViDEah~l~ 210 (515)
|++.|++........ .+...++|||||||++.
T Consensus 151 n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 151 TYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp ETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred ChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999998754331100 23567899999999983
No 86
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.87 E-value=3.9e-27 Score=203.80 Aligned_cols=146 Identities=32% Similarity=0.499 Sum_probs=132.2
Q ss_pred cceeEEeccC-CCcHHHHHHHHHhcCCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCC
Q 010196 307 LESYKLICES-KLKPLYLVALLQSLGEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGK 385 (515)
Q Consensus 307 ~~~~~~~~~~-~~k~~~l~~~l~~~~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~ 385 (515)
+.+++..+.. ..|...|..++....++++||||+++..++.+++.|...+ +.+..+||+|++.+|..+++.|++|+
T Consensus 4 i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~---~~~~~~~g~~~~~~r~~~~~~f~~g~ 80 (170)
T 2yjt_D 4 IHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAG---INNCYLEGEMVQGKRNEAIKRLTEGR 80 (170)
Confidence 4455555555 7788889998888778899999999999999999998765 88999999999999999999999999
Q ss_pred ceEEEecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHhc
Q 010196 386 IQVLVSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKAD 455 (515)
Q Consensus 386 ~~vLv~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~~ 455 (515)
.+|||||+++++|+|+|++++||++++|+++..|+||+||+||.|+.|.+++++++.|...+.++.+...
T Consensus 81 ~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~ 150 (170)
T 2yjt_D 81 VNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGKVGRYIE 150 (170)
Confidence 9999999999999999999999999999999999999999999999999999999998888777766543
No 87
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.91 E-value=6.2e-23 Score=210.74 Aligned_cols=154 Identities=20% Similarity=0.117 Sum_probs=110.4
Q ss_pred CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 47 GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 47 ~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
|| ++||+|.+++..+...+..+++++++||||+|||++|++|++. .+.+++|++||++|+.|+.+++..+..
T Consensus 1 ~~-~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-------~~~~v~i~~pt~~l~~q~~~~~~~l~~ 72 (551)
T 3crv_A 1 MV-KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-------VKPKVLFVVRTHNEFYPIYRDLTKIRE 72 (551)
T ss_dssp CC-SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-------HCSEEEEEESSGGGHHHHHHHHTTCCC
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-------CCCeEEEEcCCHHHHHHHHHHHHHHhh
Confidence 45 7999999998887776678999999999999999999999996 234899999999999999999999877
Q ss_pred ccCcEEEEeecCCchH---------------------------------HHHHHHhccCcccccccCCchhHHHhhccCC
Q 010196 127 AVGLSVGLAVGQSSIA---------------------------------DEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (515)
Q Consensus 127 ~~~~~v~~~~g~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (515)
..++++..+.|..... ......... .. ....-+....+.....+
T Consensus 73 ~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~-G~--~~~~Cpy~~ar~~~~~a 149 (551)
T 3crv_A 73 KRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKD-GL--QDKFCPYYSLLNSLYKA 149 (551)
T ss_dssp SSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHH-HH--HHTCCHHHHHHHHGGGC
T ss_pred hcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHc-CC--cCCcCccHHHHhhhhcC
Confidence 7788888887754320 000000000 00 00001122234445678
Q ss_pred cEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHHHH
Q 010196 174 DILVATPGRLMDHINATRGFTLEHLCYLVVDETDRLLR 211 (515)
Q Consensus 174 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l~~ 211 (515)
+|||+||+.|++...+..........+|||||||++.+
T Consensus 150 dIVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 150 DVIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp SEEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CEEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 99999999999876443211124678999999999877
No 88
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=7.9e-23 Score=184.76 Aligned_cols=144 Identities=21% Similarity=0.230 Sum_probs=104.1
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc--cCcccEEEEcccHHHHHH-HHHHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQ-VKDVFA 122 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt~~L~~q-~~~~~~ 122 (515)
....+|+++|.++++.++. ++++++.+|||+|||+++++++...+.... ..+.++||++|+++|+.| +.+.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~----~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALE----GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHT----TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred cCCCCchHHHHHHHHHHhc----CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3445899999999988764 789999999999999999999998776532 235589999999999999 788888
Q ss_pred HhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcC-----CCCCc
Q 010196 123 AIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRG-----FTLEH 197 (515)
Q Consensus 123 ~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~-----~~~~~ 197 (515)
.+... ++++..+.|+........ .+...++|+|+||++|...+..... ..+.+
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~---------------------~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~ 162 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFP---------------------EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSD 162 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHH---------------------HHHHHCSEEEEEHHHHHHHHHC-------CCCGGG
T ss_pred HHhcc-CceEEEEeCCcccchhHH---------------------hhccCCCEEEECHHHHHHHHhccCcccccccchhc
Confidence 88765 678888888764322111 1223469999999999998876432 45678
Q ss_pred ceEEEEcchhHHHHHHHH
Q 010196 198 LCYLVVDETDRLLREAYQ 215 (515)
Q Consensus 198 ~~~vViDEah~l~~~~~~ 215 (515)
+++||+||||++.+.++.
T Consensus 163 ~~~iIiDEah~~~~~~~~ 180 (216)
T 3b6e_A 163 FSLIIIDECHHTNKEAVY 180 (216)
T ss_dssp CSEEEETTC-------CH
T ss_pred ccEEEEECchhhccCCcH
Confidence 999999999999776443
No 89
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.88 E-value=8.5e-22 Score=203.57 Aligned_cols=88 Identities=22% Similarity=0.170 Sum_probs=76.0
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+|||.|.+++.++...+..|++++++||||+|||++|++|++..+... +.+++|++||++|+.|+.++++.+....+
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~---~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER---KLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH---TCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc---CCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 689999999988877777899999999999999999999999988652 34899999999999999999999877667
Q ss_pred cEEEEeecCCc
Q 010196 130 LSVGLAVGQSS 140 (515)
Q Consensus 130 ~~v~~~~g~~~ 140 (515)
+++..+.|+.+
T Consensus 80 ~~~~~l~gr~~ 90 (620)
T 4a15_A 80 IRAIPMQGRVN 90 (620)
T ss_dssp CCEEECCCHHH
T ss_pred eEEEEEECCCc
Confidence 88888887764
No 90
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.4e-21 Score=175.88 Aligned_cols=180 Identities=20% Similarity=0.241 Sum_probs=123.8
Q ss_pred ccCCCCCCccccCCCCCCCCCC--CCCC-----HHHHHHHH--------------hCCCCCcchhhHHHHHHHhCCCCCC
Q 010196 11 VLPWMRSPVDVSLFEDCPLDHL--PCLD-----PRLKVALQ--------------NMGISSLFPVQVAVWQETIGPGLFE 69 (515)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~--~~l~-----~~l~~~l~--------------~~~~~~~~~~Q~~a~~~~~~~~~~~ 69 (515)
+++|.++-..++.|...+++.- ..++ +.+.+.+. ..+...++++|.++++.+.. |
T Consensus 1 ~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~q~~~i~~i~~----g 76 (235)
T 3llm_A 1 VVPWSPPQSNWNPWTSSNIDEGPLAFATPEQISMDLKNELMYQLEQDHDLQAILQERELLPVKKFESEILEAISQ----N 76 (235)
T ss_dssp CCCCCCCCTTEETTTTEECCSSTTTTSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTSGGGGGHHHHHHHHHH----C
T ss_pred CcCCCCCCCCCCCCcCCccCCCCcccCChhhhcHHHHHHHHHHhhcCHHHHHHHHHHhcCChHHHHHHHHHHHhc----C
Confidence 4789999999999977665421 1121 22222222 11233579999999888754 8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcc-cCcccEEEEcccHHHHHHHHHHHHHhcc-ccCcEEEEeecCCchHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRA-VRCLRALVVLPTRDLALQVKDVFAAIAP-AVGLSVGLAVGQSSIADEISE 147 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~~v~~~~g~~~~~~~~~~ 147 (515)
+++++.||||||||.++.+++++.+.... ....++++++|+++|+.|+.+.+..... ..+..++.......
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~------- 149 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFES------- 149 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEE-------
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhh-------
Confidence 99999999999999999888887765532 2345799999999999999988876543 22333332111100
Q ss_pred HhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH-HHHHHH-hHHHHHHhh
Q 010196 148 LIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL-LREAYQ-AWLPTVLQL 224 (515)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l-~~~~~~-~~~~~i~~~ 224 (515)
......++|+|+||+++++++.. .+.++++||+||||.+ ++.++. ..+..+...
T Consensus 150 -------------------~~~~~~~~Ivv~Tpg~l~~~l~~----~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~ 205 (235)
T 3llm_A 150 -------------------ILPRPHASIMFCTVGVLLRKLEA----GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA 205 (235)
T ss_dssp -------------------ECCCSSSEEEEEEHHHHHHHHHH----CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH
T ss_pred -------------------ccCCCCCeEEEECHHHHHHHHHh----hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh
Confidence 00124578999999999999876 2778999999999986 677665 455555544
No 91
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=8.4e-21 Score=178.48 Aligned_cols=128 Identities=20% Similarity=0.167 Sum_probs=100.4
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+|+++|.+++..++. +.+.++++|||+|||++++.++...+..+ ..++||++|+++|+.||.++++++....+
T Consensus 113 ~l~~~Q~~ai~~~l~----~~~~ll~~~tGsGKT~~~~~~~~~~~~~~---~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 113 EPHWYQKDAVFEGLV----NRRRILNLPTSAGRSLIQALLARYYLENY---EGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCHHHHHHHHHHHH----HSEEEECCCTTSCHHHHHHHHHHHHHHHC---SSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred CccHHHHHHHHHHHh----cCCeEEEcCCCCCcHHHHHHHHHHHHHcC---CCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 799999999988765 57789999999999999988887766542 23799999999999999999999976656
Q ss_pred cEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 130 LSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 130 ~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
..+..+.++..... ......+|+|+||+.+..... ..+.++++||+||||++
T Consensus 186 ~~~~~~~~~~~~~~------------------------~~~~~~~I~v~T~~~l~~~~~----~~~~~~~~vIiDEaH~~ 237 (282)
T 1rif_A 186 AMIKKIGGGASKDD------------------------KYKNDAPVVVGTWQTVVKQPK----EWFSQFGMMMNDECHLA 237 (282)
T ss_dssp GGEEECSTTCSSTT------------------------CCCTTCSEEEECHHHHTTSCG----GGGGGEEEEEEETGGGC
T ss_pred ceEEEEeCCCcchh------------------------hhccCCcEEEEchHHHHhhHH----HHHhhCCEEEEECCccC
Confidence 67777777754211 112456999999998754321 23568899999999998
Q ss_pred HHH
Q 010196 210 LRE 212 (515)
Q Consensus 210 ~~~ 212 (515)
.+.
T Consensus 238 ~~~ 240 (282)
T 1rif_A 238 TGK 240 (282)
T ss_dssp CHH
T ss_pred Ccc
Confidence 654
No 92
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.80 E-value=4.6e-19 Score=164.01 Aligned_cols=126 Identities=15% Similarity=0.228 Sum_probs=98.8
Q ss_pred cCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccCccCHHHHHHHHHHHhcC-Cce-EE
Q 010196 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREG-KIQ-VL 389 (515)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~l~~f~~g-~~~-vL 389 (515)
....|...+.+++... .+.++||||++...++.+...|... + +.+..+||++++.+|.++++.|+++ +.+ +|
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g---~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L 169 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELN---TEVPFLYGELSKKERDDIISKFQNNPSVKFIV 169 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHC---SCCCEECTTSCHHHHHHHHHHHHHCTTCCEEE
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcC---CcEEEEECCCCHHHHHHHHHHhcCCCCCCEEE
Confidence 4567888888888765 6889999999999999999999863 5 7888999999999999999999998 676 78
Q ss_pred EecCCccccCCCCCCCEEEEccCCCChhhhHHhhhhcccCCCCccE--EEEeechh
Q 010196 390 VSSDAMTRGMDVEGVNNVVNYDKPAYIKTYIHRAGRTARAGQLGRC--FTLLHKDE 443 (515)
Q Consensus 390 v~T~~~~~GiDi~~v~~VI~~~~p~s~~~~~Qr~GR~gR~g~~g~~--~~~~~~~d 443 (515)
++|+++++|+|++++++||+||+|+++..|.||+||++|.|+.+.+ +.++....
T Consensus 170 ~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li~~~T 225 (271)
T 1z5z_A 170 LSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRIGQTRNVIVHKLISVGT 225 (271)
T ss_dssp EECCTTCCCCCCTTCSEEEECSCCSCTTTC--------------CCEEEEEEETTS
T ss_pred EehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccccCCCCceEEEEEeeCCC
Confidence 9999999999999999999999999999999999999999998655 55666653
No 93
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.78 E-value=4.5e-19 Score=161.41 Aligned_cols=116 Identities=28% Similarity=0.307 Sum_probs=92.9
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccC
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVG 129 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 129 (515)
+|+++|.+++..++. ++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++ +
T Consensus 93 ~l~~~Q~~ai~~~~~----~~~~ll~~~tG~GKT~~a~~~~~~~-------~~~~liv~P~~~L~~q~~~~~~~~----~ 157 (237)
T 2fz4_A 93 SLRDYQEKALERWLV----DKRGCIVLPTGSGKTHVAMAAINEL-------STPTLIVVPTLALAEQWKERLGIF----G 157 (237)
T ss_dssp CCCHHHHHHHHHHTT----TSEEEEEESSSTTHHHHHHHHHHHS-------CSCEEEEESSHHHHHHHHHHHGGG----C
T ss_pred CcCHHHHHHHHHHHh----CCCEEEEeCCCCCHHHHHHHHHHHc-------CCCEEEEeCCHHHHHHHHHHHHhC----C
Confidence 689999999988754 5679999999999999988776642 347999999999999999999884 5
Q ss_pred cE-EEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 130 LS-VGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 130 ~~-v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
+. +..+.|+.. ...+|+|+||+.+....... ...+++||+||||+
T Consensus 158 ~~~v~~~~g~~~------------------------------~~~~i~v~T~~~l~~~~~~~----~~~~~llIiDEaH~ 203 (237)
T 2fz4_A 158 EEYVGEFSGRIK------------------------------ELKPLTVSTYDSAYVNAEKL----GNRFMLLIFDEVHH 203 (237)
T ss_dssp GGGEEEESSSCB------------------------------CCCSEEEEEHHHHHHTHHHH----TTTCSEEEEECSSC
T ss_pred CCeEEEEeCCCC------------------------------CcCCEEEEeHHHHHhhHHHh----cccCCEEEEECCcc
Confidence 66 777777643 24589999999987765431 24588999999999
Q ss_pred HHHHHH
Q 010196 209 LLREAY 214 (515)
Q Consensus 209 l~~~~~ 214 (515)
+.+..+
T Consensus 204 l~~~~~ 209 (237)
T 2fz4_A 204 LPAESY 209 (237)
T ss_dssp CCTTTH
T ss_pred CCChHH
Confidence 866544
No 94
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.64 E-value=6.1e-08 Score=100.13 Aligned_cols=86 Identities=17% Similarity=0.188 Sum_probs=60.8
Q ss_pred HHHHHHHhC-CCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhH--HHhHHHHHHHhhhcccCcccEEEEcccHHHH
Q 010196 38 RLKVALQNM-GISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKT--LSYALPIVQTLSNRAVRCLRALVVLPTRDLA 114 (515)
Q Consensus 38 ~l~~~l~~~-~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT--~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~ 114 (515)
.+...|.+. .-..-.+.|..|+..++. ++.+++.|++||||| ++++++.+..+.. ..+.++++++||...+
T Consensus 136 ~~~~~l~~~~~~~~~~~~Q~~Ai~~~l~----~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~--~~~~~vll~APTg~AA 209 (608)
T 1w36_D 136 LLAQTLDKLFPVSDEINWQKVAAAVALT----RRISVISGGPGTGKTTTVAKLLAALIQMAD--GERCRIRLAAPTGKAA 209 (608)
T ss_dssp HHHHHHHTTCCCTTSCCHHHHHHHHHHT----BSEEEEECCTTSTHHHHHHHHHHHHHHTCS--SCCCCEEEEBSSHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHhc----CCCEEEEeCCCCCHHHHHHHHHHHHHHhhh--cCCCeEEEEeCChhHH
Confidence 344455543 111237889999887763 789999999999999 5566666654422 2345899999999999
Q ss_pred HHHHHHHHHhccccC
Q 010196 115 LQVKDVFAAIAPAVG 129 (515)
Q Consensus 115 ~q~~~~~~~~~~~~~ 129 (515)
.++.+.+......++
T Consensus 210 ~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 210 ARLTESLGKALRQLP 224 (608)
T ss_dssp HHHHHHHTHHHHHSS
T ss_pred HHHHHHHHHHHhcCC
Confidence 999888876654433
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.18 E-value=3.6e-06 Score=87.89 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=52.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.+.+.|.+|+..++. ...-.+|+||+|||||.+.+-.+.+.+.. +.++|+++||..=++++.+.+...
T Consensus 189 ~LN~~Q~~AV~~al~---~~~~~lI~GPPGTGKT~ti~~~I~~l~~~----~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALS---QKELAIIHGPPGTGKTTTVVEIILQAVKQ----GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHH---CSSEEEEECCTTSCHHHHHHHHHHHHHHT----TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc---CCCceEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEcCchHHHHHHHHHHHhc
Confidence 478999999987763 12347899999999999866555544443 348999999999999999888765
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.14 E-value=2.2e-05 Score=81.43 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=53.5
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..+.+.|.+|+..++. +...+|.||+|||||.+... ++..+... .+.++++++||..-++++.+.+.+.
T Consensus 179 ~~ln~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHH-HHHHHHTS--SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4688999999888763 56789999999999987544 44444431 3458999999999999999888765
No 97
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=98.08 E-value=3.9e-05 Score=70.91 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=92.3
Q ss_pred cCCCcHHHHHHHHHhc--CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEec
Q 010196 315 ESKLKPLYLVALLQSL--GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSS 392 (515)
Q Consensus 315 ~~~~k~~~l~~~l~~~--~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T 392 (515)
....|+..|..++... .+.+++||++..+..+.+.+++...+ +.+..+.|.....+ .+ -..+...+.+.|
T Consensus 106 ~~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~---~~y~RlDG~~~~~~-~k----~~~~~~~i~Llt 177 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNK---VHIKRYDGHSIKSA-AA----ANDFSCTVHLFS 177 (328)
T ss_dssp HTCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSS---CEEEESSSCCC------------CCSEEEEEEE
T ss_pred HcCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCC---CceEeCCCCchhhh-hh----cccCCceEEEEE
Confidence 4678999888888754 46799999999999999999998755 89999999855432 11 124556665667
Q ss_pred CCccccCC-----CCCCCEEEEccCCCChhhh-HHhhhhcccCC----CCccEEEEeechhHHHHHH
Q 010196 393 DAMTRGMD-----VEGVNNVVNYDKPAYIKTY-IHRAGRTARAG----QLGRCFTLLHKDEVKRFKK 449 (515)
Q Consensus 393 ~~~~~GiD-----i~~v~~VI~~~~p~s~~~~-~Qr~GR~gR~g----~~g~~~~~~~~~d~~~~~~ 449 (515)
...+-|+| +...+.||.||..+++..- +|++-|+.|.| +.-.++-++....++...-
T Consensus 178 sag~~gin~~~~nl~~aD~VI~~DsdwNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~TiEh~~l 244 (328)
T 3hgt_A 178 SEGINFTKYPIKSKARFDMLICLDTTVDTSQKDIQYLLQYKRERKGLERYAPIVRLVAINSIDHCRL 244 (328)
T ss_dssp SSCCCTTTSCCCCCSCCSEEEECSTTCCTTSHHHHHHHCCC---------CCEEEEEETTSHHHHHH
T ss_pred CCCCCCcCcccccCCCCCEEEEECCCCCCCChHHHHHHHHhhhccCCCCcceEEEEeCCCCHHHHHH
Confidence 77777786 5679999999999999875 99999999973 2356788888766555443
No 98
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=4.2e-05 Score=81.20 Aligned_cols=69 Identities=25% Similarity=0.245 Sum_probs=53.2
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..+.+.|.+|+..++. +.-++|.||+|||||.+... ++..+... .+.++++++||..-++++.+.+.+.
T Consensus 359 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~-~i~~l~~~--~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLSKI--HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHH-HHHHHHHH--HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHH-HHHHHHhC--CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 4578999999887753 55689999999999987544 33344331 2347999999999999999988875
No 99
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.04 E-value=6.4e-06 Score=82.28 Aligned_cols=73 Identities=18% Similarity=0.188 Sum_probs=52.3
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCC-CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFER-DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~-~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
+.|..+++.|.+|+..++..+..+. .+++.|+.|||||.+. ..++..+.... ...+++++||...+..+.+.+
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~--~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG--ETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT--CCCEEEEESSHHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC--CceEEEecCcHHHHHHHHhhh
Confidence 5678899999999987654333333 8999999999999764 44555555432 136899999988776665544
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.00 E-value=5.2e-05 Score=80.34 Aligned_cols=69 Identities=25% Similarity=0.233 Sum_probs=53.3
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
..+.+.|.+|+..++. +.-.+|.||+|||||.+... ++..+... .+.++++++||..-++++.+.+...
T Consensus 355 ~~Ln~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~-~i~~l~~~--~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSAT-IVYHLARQ--GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHH-HHHHHHTT--CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHH-HHHHHHHc--CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4578999999888764 55689999999999987543 44444432 3458999999999999998888764
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.82 E-value=4.8e-05 Score=77.70 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=48.0
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDV 120 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 120 (515)
.+++.|.+|+..++ .++.+++.+|.|||||.+.. .++..+.. .+.++++++||...+..+.+.
T Consensus 189 ~L~~~Q~~Av~~~~----~~~~~~I~G~pGTGKTt~i~-~l~~~l~~---~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 189 GLSEEQASVLDQLA----GHRLVVLTGGPGTGKSTTTK-AVADLAES---LGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TCCHHHHHHHHHHT----TCSEEEEECCTTSCHHHHHH-HHHHHHHH---TTCCEEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----hCCEEEEEcCCCCCHHHHHH-HHHHHHHh---cCCeEEEecCcHHHHHHhHhh
Confidence 68999999988775 36789999999999998643 34444443 345799999999888766554
No 102
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.38 E-value=0.00032 Score=73.43 Aligned_cols=82 Identities=21% Similarity=0.136 Sum_probs=61.3
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc-
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~- 127 (515)
..+++-|.+|+.. .+..++|.|+.|||||.+.+.-+...+.....+..++|++++|+..+.++.+.+.+....
T Consensus 8 ~~Ln~~Q~~av~~------~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~~ 81 (647)
T 3lfu_A 8 DSLNDKQREAVAA------PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGTS 81 (647)
T ss_dssp TTCCHHHHHHHTC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCSC
T ss_pred hcCCHHHHHHHhC------CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999999642 256799999999999998666566555554444568999999999999999999887532
Q ss_pred -cCcEEEEee
Q 010196 128 -VGLSVGLAV 136 (515)
Q Consensus 128 -~~~~v~~~~ 136 (515)
.++.+..++
T Consensus 82 ~~~~~v~Tfh 91 (647)
T 3lfu_A 82 QGGMWVGTFH 91 (647)
T ss_dssp CTTCEEEEHH
T ss_pred cCCcEEEcHH
Confidence 234454443
No 103
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=97.15 E-value=0.00076 Score=70.82 Aligned_cols=82 Identities=18% Similarity=0.092 Sum_probs=62.0
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcccc-
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAV- 128 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~- 128 (515)
.+++-|.+|+.. .+..++|.|+.|||||.+..--+...+...+....++|+++.|+..+.++.+.+.......
T Consensus 2 ~L~~~Q~~av~~------~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~~ 75 (673)
T 1uaa_A 2 RLNPGQQQAVEF------VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRKE 75 (673)
T ss_dssp CCCHHHHHHHHC------CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTTT
T ss_pred CCCHHHHHHHhC------CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCccc
Confidence 478999999653 2678999999999999986655655555533445689999999999999999998876432
Q ss_pred --CcEEEEeec
Q 010196 129 --GLSVGLAVG 137 (515)
Q Consensus 129 --~~~v~~~~g 137 (515)
++.|..+++
T Consensus 76 ~~~~~v~Tfhs 86 (673)
T 1uaa_A 76 ARGLMISTFHT 86 (673)
T ss_dssp TTTSEEEEHHH
T ss_pred ccCCEEEeHHH
Confidence 356665544
No 104
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=97.02 E-value=0.0014 Score=69.23 Aligned_cols=83 Identities=18% Similarity=0.135 Sum_probs=61.7
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc-
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA- 127 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~- 127 (515)
..+++-|.+|+.+ .+..++|.|+.|||||.+...-+...+........++|+++.|+..+.++.+.+..+...
T Consensus 10 ~~Ln~~Q~~av~~------~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~ 83 (724)
T 1pjr_A 10 AHLNKEQQEAVRT------TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGA 83 (724)
T ss_dssp TTSCHHHHHHHHC------CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGG
T ss_pred hhCCHHHHHHHhC------CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccc
Confidence 4689999999653 256899999999999998666565555543344568999999999999999988877532
Q ss_pred -cCcEEEEeec
Q 010196 128 -VGLSVGLAVG 137 (515)
Q Consensus 128 -~~~~v~~~~g 137 (515)
.++.+..+++
T Consensus 84 ~~~~~v~Tfhs 94 (724)
T 1pjr_A 84 AEDVWISTFHS 94 (724)
T ss_dssp GTTSEEEEHHH
T ss_pred ccCcEEeeHHH
Confidence 2355555543
No 105
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.96 E-value=0.00076 Score=65.49 Aligned_cols=45 Identities=20% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
+-.++.|+.|+|||... .+.+.. ...+|++||++++..+.+.+.+
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~-----~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF-----EEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT-----TTCEEEESCHHHHHHHHHHHTT
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc-----CCeEEEeCCHHHHHHHHHHhhh
Confidence 34678999999999853 333321 2579999999999888877743
No 106
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.73 E-value=0.0048 Score=52.97 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=27.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
.|+-.++.+|+|+|||...+-.+.+.. ..+.+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~----~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK----IAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH----HTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH----HCCCEEEEEEec
Confidence 356678899999999987554333332 234589999887
No 107
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.68 E-value=0.0029 Score=60.65 Aligned_cols=71 Identities=14% Similarity=0.004 Sum_probs=54.3
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhcc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAP 126 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 126 (515)
.++|+|...+..+. ..+-+++..+-+.|||.+....++..+.. .++..+++++|+...|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~----~~R~~vi~~sRq~GKT~l~a~~~l~~a~~--~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCF--NKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHH----HSSEEEEEECSSSCHHHHHHHHHHHHHHS--SSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhc----cCcEEEEEEcCcCChhHHHHHHHHHHHHh--CCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999877542 13558899999999999877666654443 2455799999999999888888877654
No 108
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.63 E-value=0.00074 Score=57.94 Aligned_cols=39 Identities=21% Similarity=0.057 Sum_probs=26.3
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
|.-.++.+|+|+|||...+-.+..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~----~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL----GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH----TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH----CCCeEEEEeecc
Confidence 556789999999999875443333322 234688888873
No 109
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.61 E-value=0.0034 Score=64.58 Aligned_cols=72 Identities=14% Similarity=0.010 Sum_probs=55.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (515)
.|+|+|...+..+- ..+.+++..+-|+|||.+....++..+... ++..++++.|+...+..+.+.++.+...
T Consensus 163 ~l~p~Q~~i~~~l~----~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~--~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 163 QLRDYQRDMLKIMS----SKRMTVCNLSRQLGKTTVVAIFLAHFVCFN--KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CCCHHHHHHHHHHH----HCSEEEEEECSSSCHHHHHHHHHHHHHHTS--SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHhhc----cccEEEEEEcCccChHHHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 48999999877542 246689999999999998776666555443 3457999999999999998888877654
No 110
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.57 E-value=0.0062 Score=51.88 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.++.+++.+|+|+|||..+..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 368899999999999986443
No 111
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.40 E-value=0.0093 Score=56.52 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=28.4
Q ss_pred cchhhHHHHHHHhCCCCCC---CCEEEECCCCchhHHHhHH
Q 010196 51 LFPVQVAVWQETIGPGLFE---RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~~~~~~---~~~ii~a~TGsGKT~~~~~ 88 (515)
++|||.+++..+...+..+ ..+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 5799999887766544333 3489999999999986554
No 112
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.34 E-value=0.0054 Score=53.23 Aligned_cols=39 Identities=21% Similarity=0.026 Sum_probs=26.9
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
|.-.++.+++|+|||...+-.+..... .+.+++++.|..
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~----~g~kVli~k~~~ 66 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF----AKQHAIVFKPCI 66 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEECC-
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH----CCCEEEEEEecc
Confidence 455668999999999875544444333 345899998875
No 113
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.28 E-value=0.006 Score=53.73 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=26.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
.|.-+++.+++|+|||...+-.+..... .+.+++++.|..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~----~g~kVli~~~~~ 50 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEY----ADVKYLVFKPKI 50 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHH----TTCCEEEEEECC
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHh----cCCEEEEEEecc
Confidence 3566888999999999875444333332 344788887753
No 114
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.018 Score=53.57 Aligned_cols=27 Identities=15% Similarity=0.064 Sum_probs=20.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
.+.++++.+|+|+|||.+.-. ++..+.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~-v~~~L~ 70 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND-VMDELI 70 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH-HHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHHH
Confidence 467899999999999987544 444444
No 115
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.13 E-value=0.0088 Score=67.03 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=55.4
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc--cCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
.+++-|.+++.. .+++++|.|..|||||.+.+--++..+..+. ....+++++++|++.+.++.+.+...
T Consensus 10 ~~t~eQ~~~i~~------~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 10 TWTDDQWNAIVS------TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp CCCHHHHHHHHC------CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC------CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 689999999642 2789999999999999987666666666532 24458999999999999998888764
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.04 E-value=0.0043 Score=53.74 Aligned_cols=39 Identities=18% Similarity=0.107 Sum_probs=26.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
|.-.++.+|+|+|||...+-.+ ..... .+.+++++.|..
T Consensus 28 G~I~vitG~M~sGKTT~Llr~~-~r~~~---~g~kvli~kp~~ 66 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEELIRRL-RRGIY---AKQKVVVFKPAI 66 (219)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHHHH---TTCCEEEEEEC-
T ss_pred ceEEEEECCCCCCHHHHHHHHH-HHHHH---cCCceEEEEecc
Confidence 5567889999999997544333 33322 345789998864
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.90 E-value=0.0059 Score=52.07 Aligned_cols=38 Identities=18% Similarity=0.092 Sum_probs=26.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
++-.++.+|+|+|||.-.+-.+-+... .+.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~----~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQI----AQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHH----TTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHH----cCCeEEEEccc
Confidence 667889999999999654433333332 34579999887
No 118
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.41 E-value=0.076 Score=49.89 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=23.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+..+++.||+|+|||..+-. +...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~-i~~~~~~~---~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQA-AGNEAKKR---GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHH-HHHHHHHT---TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHC---CCEEEEEE
Confidence 57899999999999986443 33333322 23455554
No 119
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.35 E-value=0.012 Score=51.66 Aligned_cols=39 Identities=18% Similarity=0.154 Sum_probs=27.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
|.-.++.+++|+|||...+-.+.... ..+.+++++-|..
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~~~r~~----~~g~kvli~kp~~ 57 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRRVRRFQ----IAQYKCLVIKYAK 57 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH----TTTCCEEEEEETT
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHH----HCCCeEEEEeecC
Confidence 66678899999999987544444333 3455899998874
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.90 E-value=0.19 Score=43.76 Aligned_cols=18 Identities=33% Similarity=0.551 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 469999999999998543
No 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.87 E-value=0.044 Score=56.09 Aligned_cols=57 Identities=18% Similarity=0.220 Sum_probs=40.8
Q ss_pred CcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 50 SLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 50 ~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
.++.-|.+|+..++... ....++.|+-|.|||.+..+.+ ..+.. .++|.+|+.+=+.
T Consensus 175 ~~T~dQ~~al~~~~~~~--~~~~vlta~RGRGKSa~lG~~~-a~~~~------~~~vtAP~~~a~~ 231 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMP--PGVAAVTAARGRGKSALAGQLI-SRIAG------RAIVTAPAKASTD 231 (671)
T ss_dssp SCCHHHHHHHHHHTTCC--SEEEEEEECTTSSHHHHHHHHH-HHSSS------CEEEECSSCCSCH
T ss_pred CCCHHHHHHHHHHHHhh--hCeEEEecCCCCCHHHHHHHHH-HHHHh------CcEEECCCHHHHH
Confidence 57889999998877643 2347899999999997655433 33321 4688899977544
No 122
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.87 E-value=0.11 Score=50.09 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.+..+++.||+|+|||..+-.
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHH
Confidence 457899999999999986443
No 123
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.84 E-value=0.19 Score=49.34 Aligned_cols=39 Identities=23% Similarity=0.173 Sum_probs=24.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
...+++.||+|+|||..+.. +...+... .++..++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~a-ia~~l~~~-~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQS-IGNYVVQN-EPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHH-HHHHHHHH-CCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHHh-CCCCeEEEeeH
Confidence 56899999999999986543 33333322 12334555543
No 124
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.50 E-value=0.081 Score=49.10 Aligned_cols=19 Identities=16% Similarity=-0.165 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhHH
Q 010196 70 RDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~ 88 (515)
...++.+|.|+|||..+..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLE 37 (305)
T ss_dssp EEEEEECSSSSHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 4689999999999986543
No 125
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.48 E-value=0.31 Score=41.19 Aligned_cols=19 Identities=21% Similarity=0.268 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.++++.+|+|+|||..+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SCEEEEECCTTSCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 126
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.29 E-value=0.28 Score=44.55 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=16.7
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
...+++.+|+|+|||..+..
T Consensus 64 ~~~vLl~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHH
Confidence 46799999999999986543
No 127
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.29 E-value=0.11 Score=54.81 Aligned_cols=81 Identities=12% Similarity=0.152 Sum_probs=67.4
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-ccccCCCCCCCEEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMDVEGVNNVV 408 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~~~GiDi~~v~~VI 408 (515)
.+.+++|.+|++.-+...++.+.... ..++.+..+||+++..+|...++.+.+|+.+|+|+|.. +...+++.++.+||
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVV 495 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 495 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEE
Confidence 36789999999999999888887643 34588999999999999999999999999999999964 33457788888888
Q ss_pred Ecc
Q 010196 409 NYD 411 (515)
Q Consensus 409 ~~~ 411 (515)
.-.
T Consensus 496 IDE 498 (780)
T 1gm5_A 496 IDE 498 (780)
T ss_dssp EES
T ss_pred ecc
Confidence 644
No 128
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.22 E-value=0.21 Score=46.80 Aligned_cols=14 Identities=36% Similarity=0.321 Sum_probs=12.3
Q ss_pred cceEEEEcchhHHH
Q 010196 197 HLCYLVVDETDRLL 210 (515)
Q Consensus 197 ~~~~vViDEah~l~ 210 (515)
..++|++||+|.+.
T Consensus 105 ~~~vliiDEi~~l~ 118 (324)
T 3u61_B 105 RQKVIVIDEFDRSG 118 (324)
T ss_dssp CEEEEEEESCCCGG
T ss_pred CCeEEEEECCcccC
Confidence 57899999999885
No 129
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.20 E-value=0.23 Score=47.88 Aligned_cols=19 Identities=37% Similarity=0.580 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+++++.+|+|+|||..+-
T Consensus 148 ~~~vLL~GppGtGKT~la~ 166 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAK 166 (389)
T ss_dssp CSEEEEESSTTSCHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998644
No 130
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.64 E-value=0.083 Score=49.50 Aligned_cols=18 Identities=33% Similarity=0.466 Sum_probs=15.2
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.||+|+|||..+.
T Consensus 47 ~~~ll~G~~G~GKT~la~ 64 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAAL 64 (327)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 369999999999998644
No 131
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.59 E-value=0.077 Score=50.44 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.||+|+|||..+-
T Consensus 59 ~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 459999999999998643
No 132
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.51 E-value=0.55 Score=46.43 Aligned_cols=53 Identities=15% Similarity=0.167 Sum_probs=40.4
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPA 127 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 127 (515)
.+....+.+-||||||++..- +.+ . .+..+|||+|+...|.|++++++.+.+.
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~---~---~~~p~lvv~~~~~~A~~l~~~l~~~~~~ 65 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAE---R---HAGPVVLIAPDMQNALRLHDEISQFTDQ 65 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHH---H---SSSCEEEEESSHHHHHHHHHHHHHTCSS
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHH---H---hCCCEEEEeCCHHHHHHHHHHHHhhCCC
Confidence 356789999999999986332 222 1 1225899999999999999999998764
No 133
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=93.38 E-value=0.84 Score=37.63 Aligned_cols=78 Identities=17% Similarity=0.203 Sum_probs=55.4
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
..++||.++++..+..+++.+... ++.+..++|+.+..+....+. ..-....+|+|+|.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 93 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMN-----------------EFKRGEYRYLVATD 93 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEECG
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEECC
Confidence 347999999999999999888875 788999999987665533221 11223578999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcch
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEa 206 (515)
.+. .++++.++++||.-+.
T Consensus 94 -----~~~--~Gld~~~~~~Vi~~~~ 112 (163)
T 2hjv_A 94 -----VAA--RGIDIENISLVINYDL 112 (163)
T ss_dssp -----GGT--TTCCCSCCSEEEESSC
T ss_pred -----hhh--cCCchhcCCEEEEeCC
Confidence 222 4577778888886543
No 134
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=93.16 E-value=0.34 Score=47.06 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=66.3
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcc----ccCCCCCCCE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT----RGMDVEGVNN 406 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~----~GiDi~~v~~ 406 (515)
.+.++||.+|++..+..+++.+..++..++.+..++|+.+..++...++.+..|+.+|+|+|+-.- .-++..++++
T Consensus 63 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~ 142 (414)
T 3oiy_A 63 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 142 (414)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSE
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccE
Confidence 567899999999999999999988654568999999999999998999999999999999996321 1245567888
Q ss_pred EEEcc
Q 010196 407 VVNYD 411 (515)
Q Consensus 407 VI~~~ 411 (515)
||.-.
T Consensus 143 iViDE 147 (414)
T 3oiy_A 143 VFVDD 147 (414)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 87544
No 135
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.88 E-value=0.35 Score=46.36 Aligned_cols=19 Identities=26% Similarity=0.207 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
++.+++.+|+|+|||..+.
T Consensus 45 ~~~vll~G~~G~GKT~la~ 63 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSK 63 (384)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999998654
No 136
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.55 E-value=0.39 Score=46.66 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=22.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
.-+++.+++|+|||.+....+. .+.. .+.+++++.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~-~l~~---~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAY-FYKK---RGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHH-HHHH---TTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEEe
Confidence 4577899999999987654333 3332 234566654
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.36 E-value=0.8 Score=40.23 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+++.+|+|+|||....
T Consensus 46 ~~~ll~G~~G~GKT~l~~ 63 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIAR 63 (250)
T ss_dssp SEEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 138
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.15 E-value=0.17 Score=49.79 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.+|+|+|||..+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 579999999999998644
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.13 E-value=0.65 Score=44.36 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.||+|+|||...-
T Consensus 44 ~~~~vli~G~~G~GKTtl~~ 63 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVK 63 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999998644
No 140
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=91.89 E-value=1.4 Score=36.68 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=54.5
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
..++||.++++..+..+++.+... +..+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~-----------------~f~~g~~~vLvaT~ 92 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQ-----------------RFRDGKEKVLITTN 92 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHH-----------------HHHTTSCSEEEECC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEec
Confidence 448999999999999988888765 678999999988766543221 11223578999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEc
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVD 204 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViD 204 (515)
.+ ..++++..+++||.-
T Consensus 93 -----~~--~~Gid~~~~~~Vi~~ 109 (175)
T 2rb4_A 93 -----VC--ARGIDVKQVTIVVNF 109 (175)
T ss_dssp -----SC--CTTTCCTTEEEEEES
T ss_pred -----ch--hcCCCcccCCEEEEe
Confidence 12 245778888888853
No 141
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=91.88 E-value=1.6 Score=35.90 Aligned_cols=77 Identities=12% Similarity=0.166 Sum_probs=54.2
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
..++||.++++.-+..+++.++.. +..+..++|+.+..++...+. ..-.....|+|+|.
T Consensus 30 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~ 88 (165)
T 1fuk_A 30 VTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMK-----------------EFRSGSSRILISTD 88 (165)
T ss_dssp CSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEEEG
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHcCCCEEEEEcC
Confidence 347999999999999988888775 678899999987665533221 11224578999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
.+. .++++.++++||.-+
T Consensus 89 -----~~~--~G~d~~~~~~Vi~~~ 106 (165)
T 1fuk_A 89 -----LLA--RGIDVQQVSLVINYD 106 (165)
T ss_dssp -----GGT--TTCCCCSCSEEEESS
T ss_pred -----hhh--cCCCcccCCEEEEeC
Confidence 222 456777888887643
No 142
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.80 E-value=1.6 Score=40.73 Aligned_cols=53 Identities=13% Similarity=-0.104 Sum_probs=30.8
Q ss_pred HHHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc--cCcccEEEEccc
Q 010196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPT 110 (515)
Q Consensus 58 a~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt 110 (515)
.+..++. .+..|.-+++.+|+|+|||..++..+........ ..+.+++|+.-.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e 150 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTE 150 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 3444443 3345677899999999999865554443222100 013467777644
No 143
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=91.72 E-value=1.3 Score=36.79 Aligned_cols=78 Identities=13% Similarity=0.105 Sum_probs=55.4
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
..++||.++++.-+..+++.+... ++.+..++|+.+..+....+. .......+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~-----------------~f~~g~~~vLvaT~ 89 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVATN 89 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTSCSEEEESS
T ss_pred CCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCcEEEECC
Confidence 347999999999999999888875 678899999987665533221 11234579999993
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcch
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDET 206 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDEa 206 (515)
- + ..++++..+++||.-+.
T Consensus 90 ~-----~--~~Gldi~~~~~Vi~~d~ 108 (172)
T 1t5i_A 90 L-----F--GRGMDIERVNIAFNYDM 108 (172)
T ss_dssp C-----C--STTCCGGGCSEEEESSC
T ss_pred c-----h--hcCcchhhCCEEEEECC
Confidence 1 1 24577778888886443
No 144
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=91.42 E-value=0.7 Score=39.12 Aligned_cols=78 Identities=23% Similarity=0.198 Sum_probs=45.8
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
.+.++||.++++.-+..+++.++.. ++.+..++|+.+..++...+ ........+|+|+|
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~-----------------~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEAL-----------------HQFRSGKSPILVAT 103 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHH-----------------HHHHHTSSSEEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHH-----------------HHHHcCCCeEEEEc
Confidence 3457999999999999988888775 67889999987654432211 11223457899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
. . +. .++++.++++||.-+
T Consensus 104 ~-~----~~--~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 104 A-V----AA--RGLDISNVKHVINFD 122 (185)
T ss_dssp C-------------CCCSBSEEEESS
T ss_pred C-h----hh--cCCCcccCCEEEEeC
Confidence 2 2 11 346677788887633
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.37 E-value=1.1 Score=43.69 Aligned_cols=62 Identities=21% Similarity=0.052 Sum_probs=36.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc--ccHHHHHHHHHHHHHhccccCcEEEEeecC
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL--PTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 138 (515)
.-+++.+++|+|||.+..-.+. ++.. .+.+++++. |.+.-+ .+.++.+....++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~~---~G~kVllv~~D~~R~aa---~eqL~~~~~~~gvpv~~~~~~ 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQK---RGYKVGVVCSDTWRPGA---YHQLRQLLDRYHIEVFGNPQE 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEECCCSSTHH---HHHHHHHHGGGTCEEECCTTC
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHHH---CCCeEEEEeCCCcchhH---HHHHHHHHHhcCCcEEecCCC
Confidence 3478899999999997654433 3333 234566654 444433 344555555567766554333
No 146
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.06 E-value=1.7 Score=37.56 Aligned_cols=75 Identities=23% Similarity=0.193 Sum_probs=54.5
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
+.++||.++++.-++.+++.+... ++.+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~-----------------~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLG-----------------AFRQGEVRVLVATD 89 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHH-----------------HHHSSSCCEEEECT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHH-----------------HHHCCCCeEEEecC
Confidence 348999999999999998888775 788999999988766543221 12234578999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEEE
Q 010196 181 GRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
.+. .++++.++++||.
T Consensus 90 -----~~~--~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 90 -----VAA--RGLDIPQVDLVVH 105 (212)
T ss_dssp -----TTT--CSSSCCCBSEEEE
T ss_pred -----hhh--cCCCCccCcEEEE
Confidence 222 4577888888885
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=90.95 E-value=0.2 Score=43.09 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=18.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHh
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
.++++.+|+|+|||..+.. +...+
T Consensus 55 ~~~~l~G~~GtGKT~la~~-i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAA-IANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHH-HHHHH
T ss_pred CeEEEECCCCCCHHHHHHH-HHHHH
Confidence 7899999999999986443 33333
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.93 E-value=0.31 Score=46.80 Aligned_cols=17 Identities=24% Similarity=0.403 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.||+|+|||...-
T Consensus 46 ~~li~G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLR 62 (389)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 79999999999998643
No 149
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=90.93 E-value=2.8 Score=35.55 Aligned_cols=76 Identities=13% Similarity=0.166 Sum_probs=54.5
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCCh
Q 010196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (515)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~ 181 (515)
.++||.++++.-++.+++.++.. ++.+..++|+.+..++...+. ..-....+|+|+|
T Consensus 55 ~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT-- 111 (191)
T 2p6n_A 55 PPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIE-----------------AFREGKKDVLVAT-- 111 (191)
T ss_dssp SCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSCSEEEEC--
T ss_pred CCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCEEEEEc--
Confidence 47999999999999999888776 688899999987665543221 1123457899999
Q ss_pred HHHHHHhcCcCCCCCcceEEEEcc
Q 010196 182 RLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
+.+. .++++.++++||.-+
T Consensus 112 ---~~~~--~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 112 ---DVAS--KGLDFPAIQHVINYD 130 (191)
T ss_dssp ---HHHH--TTCCCCCCSEEEESS
T ss_pred ---Cchh--cCCCcccCCEEEEeC
Confidence 2233 346777888888644
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.63 E-value=0.61 Score=43.32 Aligned_cols=18 Identities=33% Similarity=0.377 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.||+|+|||..+.
T Consensus 43 ~~~ll~G~~G~GKt~la~ 60 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVH 60 (323)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECcCCCCHHHHHH
Confidence 349999999999998644
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.56 E-value=0.18 Score=40.81 Aligned_cols=21 Identities=10% Similarity=0.178 Sum_probs=17.7
Q ss_pred CCCCCEEEECCCCchhHHHhH
Q 010196 67 LFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.++++.+|+|+|||..+-
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~ 42 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGAR 42 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHHH
Confidence 357899999999999998654
No 152
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=90.47 E-value=0.37 Score=55.65 Aligned_cols=50 Identities=18% Similarity=0.092 Sum_probs=34.3
Q ss_pred HHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
+..++. .+..++++++.+|+|+|||..+...+.+.... +.+++|+.....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~----G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTTSC
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc----CCcEEEEEcccc
Confidence 445444 23457899999999999999876655554433 447888876533
No 153
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.29 E-value=0.92 Score=50.30 Aligned_cols=79 Identities=11% Similarity=0.246 Sum_probs=64.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhc-CCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-CccccCCCCCCCEEE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHF-GELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-AMTRGMDVEGVNNVV 408 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~-~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-~~~~GiDi~~v~~VI 408 (515)
.+.+++|.++++..+...++.+... ...+..+..+++..+..++...++.+..|+.+|+|+|. .+...+.+.++.+||
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEE
Confidence 4568999999999999988888653 33457889999999999999999999999999999995 444557777787777
Q ss_pred E
Q 010196 409 N 409 (515)
Q Consensus 409 ~ 409 (515)
.
T Consensus 731 i 731 (1151)
T 2eyq_A 731 V 731 (1151)
T ss_dssp E
T ss_pred E
Confidence 5
No 154
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.22 E-value=0.47 Score=52.27 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=67.0
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcc----ccCCCCCCCE
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT----RGMDVEGVNN 406 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~----~GiDi~~v~~ 406 (515)
.+.++||.+|++..+..+++.+..++..++.+..+||+++..+|...++.+..|+.+|+|+|.-.- .-+++.++++
T Consensus 120 ~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~ 199 (1104)
T 4ddu_A 120 KGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDF 199 (1104)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSE
T ss_pred cCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCE
Confidence 467899999999999999999998665668999999999998999999999999999999996321 0145567888
Q ss_pred EEEcc
Q 010196 407 VVNYD 411 (515)
Q Consensus 407 VI~~~ 411 (515)
||.-.
T Consensus 200 lViDE 204 (1104)
T 4ddu_A 200 VFVDD 204 (1104)
T ss_dssp EEESC
T ss_pred EEEeC
Confidence 88644
No 155
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=89.99 E-value=0.58 Score=44.60 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+++.||+|+|||..+.
T Consensus 39 ~~~ll~G~~G~GKT~la~ 56 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIAR 56 (373)
T ss_dssp SEEEEESCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357999999999998654
No 156
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.85 E-value=0.45 Score=43.88 Aligned_cols=45 Identities=11% Similarity=-0.129 Sum_probs=29.9
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+..| -+++.+|+|+|||..++-.+.+....+ .+.+++|+....++
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~g--~g~~vlyId~E~s~ 70 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQY--PDAVCLFYDSEFGI 70 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHHC--TTCEEEEEESSCCC
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhcC--CCceEEEEeccchh
Confidence 3456 688999999999987665555444331 23478888765554
No 157
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.79 E-value=0.2 Score=47.75 Aligned_cols=49 Identities=16% Similarity=0.005 Sum_probs=31.4
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
.+..++. .+..|.-+++.+++|+|||..++-.+.+.... +..++|+...
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~----g~~vlyi~~E 111 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA----GGTCAFIDAE 111 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHC----CCeEEEEECC
Confidence 4555554 34456778999999999998655444443332 2367777644
No 158
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.75 E-value=0.25 Score=46.66 Aligned_cols=49 Identities=16% Similarity=-0.059 Sum_probs=29.7
Q ss_pred HHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 59 WQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 59 ~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
+..++. .+..|.-++|.+|+|+|||..++. +...+.. .+.+++|+....
T Consensus 49 LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~-la~~~~~---~gg~VlyId~E~ 99 (356)
T 3hr8_A 49 IDIATGVGGYPRGRIVEIFGQESSGKTTLALH-AIAEAQK---MGGVAAFIDAEH 99 (356)
T ss_dssp HHHHTSSSSEETTEEEEEEESTTSSHHHHHHH-HHHHHHH---TTCCEEEEESSC
T ss_pred HHHHhccCCccCCcEEEEECCCCCCHHHHHHH-HHHHHHh---cCCeEEEEeccc
Confidence 444444 333567789999999999985443 3333322 233677876543
No 159
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.75 E-value=0.46 Score=40.75 Aligned_cols=48 Identities=13% Similarity=0.114 Sum_probs=30.6
Q ss_pred HHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHh
Q 010196 37 PRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 37 ~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~ 86 (515)
..|.+-|.-.|+ .+... ..++...+...-..+.+++.+|+|+|||..+
T Consensus 28 ~~I~~~l~yq~~-~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 28 RPIVQFLRYQQI-EFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHHTTC-CHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHHcCc-CHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 356666665554 44444 4455555554333456999999999999854
No 160
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=87.61 E-value=2.2 Score=36.95 Aligned_cols=76 Identities=8% Similarity=0.231 Sum_probs=55.0
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----c-cccCCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEG 403 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~-~~GiDi~~ 403 (515)
..++||.++++..+..+++.++.+... +..+..++|+.+...+. +.+..+..+|+|+|.- + ...+++.+
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE---EVLKKNCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHH---HHHHHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHH---HHHhcCCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 348999999999999999888776422 57888999998865544 3445567899999952 1 23356777
Q ss_pred CCEEEEc
Q 010196 404 VNNVVNY 410 (515)
Q Consensus 404 v~~VI~~ 410 (515)
+++||.-
T Consensus 159 ~~~lViD 165 (220)
T 1t6n_A 159 IKHFILD 165 (220)
T ss_dssp CCEEEEE
T ss_pred CCEEEEc
Confidence 8877753
No 161
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=87.55 E-value=5.5 Score=40.22 Aligned_cols=100 Identities=14% Similarity=0.120 Sum_probs=65.3
Q ss_pred chhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCccccccc
Q 010196 80 SGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGIC 159 (515)
Q Consensus 80 sGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~ 159 (515)
..+....+..+...+... ..+.++||.++++.-+..+++.++...+. +..+..++|+.+..++...+.
T Consensus 319 ~~~~~~~~~~l~~~~~~~-~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~~~v~~~h~~~~~~~R~~~~~---------- 386 (563)
T 3i5x_A 319 ANSIFAAVEHIKKQIKER-DSNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK---------- 386 (563)
T ss_dssp THHHHHHHHHHHHHHHHT-TTCCEEEEECSCHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH----------
T ss_pred HhhHHHHHHHHHHHHhhc-CCCCcEEEEcCcHHHHHHHHHHHHHhccC-CceEEEecCCCCHHHHHHHHH----------
Confidence 344443333344444332 34458999999999999999999887543 678899999987665533221
Q ss_pred CCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 160 YDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 160 ~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
.......+|+|+|. .+. .++++.++++||.-.
T Consensus 387 -------~f~~g~~~vLvaT~-----~~~--~GiDip~v~~VI~~~ 418 (563)
T 3i5x_A 387 -------RFKKDESGILVCTD-----VGA--RGMDFPNVHEVLQIG 418 (563)
T ss_dssp -------HHHHCSSEEEEECG-----GGT--SSCCCTTCCEEEEES
T ss_pred -------HHhcCCCCEEEEcc-----hhh--cCCCcccCCEEEEEC
Confidence 11234578999993 222 457788888888554
No 162
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.52 E-value=0.22 Score=40.25 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.9
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.+.++++.+|+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999975
No 163
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=87.31 E-value=3.9 Score=39.32 Aligned_cols=76 Identities=24% Similarity=0.209 Sum_probs=54.9
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
.+.++||.++++.-++.+++.+... +..+..++|+.+..++...+. .......+|+|+|
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlvaT 333 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALH-----------------QFRSGKSPILVAT 333 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEEC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHH-----------------HHHcCCCCEEEEC
Confidence 3457999999999999998888775 678899999988665533221 1122457899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEE
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
. .+. .++++.++++||.
T Consensus 334 ~-----~~~--~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 334 A-----VAA--RGLDISNVKHVIN 350 (417)
T ss_dssp H-----HHH--TTSCCCCEEEEEE
T ss_pred C-----hhh--cCCCcccCCEEEE
Confidence 3 333 3577888888885
No 164
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.25 E-value=0.66 Score=43.00 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.9
Q ss_pred CCCEEEECCCCchhHHHhHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
+.++++.||+|+|||..+...+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia 173 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMA 173 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 5789999999999998655433
No 165
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=86.96 E-value=2.8 Score=37.26 Aligned_cols=76 Identities=14% Similarity=0.261 Sum_probs=53.5
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----c--cccCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M--TRGMDVE 402 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~--~~GiDi~ 402 (515)
.+.++||.++++..+..+++.++.... .+..+..++|+.+.......+ .+..+|+|+|.- + ..++++.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~I~v~Tp~~l~~~l~~~~~~~l~ 185 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLAL----AKKPHIIIATPGRLIDHLENTKGFNLR 185 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHH----HTCCSEEEECHHHHHHHHHHSTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHh----cCCCCEEEECHHHHHHHHHcCCCcCcc
Confidence 345799999999999999888876532 247788899988765543333 246789999952 1 1356777
Q ss_pred CCCEEEEc
Q 010196 403 GVNNVVNY 410 (515)
Q Consensus 403 ~v~~VI~~ 410 (515)
++++||.-
T Consensus 186 ~~~~lViD 193 (249)
T 3ber_A 186 ALKYLVMD 193 (249)
T ss_dssp TCCEEEEC
T ss_pred ccCEEEEc
Confidence 78877753
No 166
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=86.96 E-value=1.4 Score=38.43 Aligned_cols=76 Identities=9% Similarity=0.147 Sum_probs=50.8
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC------ccccCCCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA------MTRGMDVEGV 404 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~------~~~GiDi~~v 404 (515)
.+.++||.++++..+..+.+.+......+..+..++|+.+...+... +. ...+|+|+|.- ....+++.++
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~iiv~Tp~~l~~~~~~~~~~~~~~ 168 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIED---IS-KGVDIIIATPGRLNDLQMNNSVNLRSI 168 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHH---HH-SCCSEEEECHHHHHHHHHTTCCCCTTC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCcCcccc
Confidence 45679999999999999999998876566788888888775444332 22 34789999952 1234567778
Q ss_pred CEEEEc
Q 010196 405 NNVVNY 410 (515)
Q Consensus 405 ~~VI~~ 410 (515)
++||.-
T Consensus 169 ~~lViD 174 (228)
T 3iuy_A 169 TYLVID 174 (228)
T ss_dssp CEEEEC
T ss_pred eEEEEE
Confidence 877753
No 167
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=86.44 E-value=0.72 Score=51.47 Aligned_cols=40 Identities=20% Similarity=0.176 Sum_probs=30.3
Q ss_pred EEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHH
Q 010196 73 CINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDL 113 (515)
Q Consensus 73 ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L 113 (515)
+|.|..|||||.+.+--+...+..+ ..+.++|++||...-
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~-~~~~~il~lVP~q~T 44 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRA-PFGKPIIFLVPDQMT 44 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHC-TTSSCEEEECCGGGH
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhC-CCCCcEEEEecCccc
Confidence 6889999999998776666666554 344689999998653
No 168
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=86.34 E-value=0.61 Score=45.71 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=31.0
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLAL 115 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~ 115 (515)
..++++.|+||+|||... ..++..+.. .+..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~---~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLL---RGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHH---TTCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHH---CCCcEEEEeCCCchhH
Confidence 578999999999999964 344444443 2336888889888754
No 169
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=86.33 E-value=2.6 Score=43.63 Aligned_cols=80 Identities=20% Similarity=0.386 Sum_probs=59.0
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~ 178 (515)
.+.++||.++|+.-++.+.+.+.+. ++++..++|+.+..++...+ ..++ +..+|+|+
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l------------------~~f~~g~~~VLVa 501 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEII------------------RDLRLGKYDVLVG 501 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHH------------------HHHHHTSCSEEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHH------------------HHHhcCCeEEEEe
Confidence 3458999999999999888888876 67888889887765553222 2222 45789999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
|. .+ ..++++.++++||+-+++.
T Consensus 502 T~-----~l--~~GlDip~v~lVi~~d~d~ 524 (661)
T 2d7d_A 502 IN-----LL--REGLDIPEVSLVAILDADK 524 (661)
T ss_dssp SC-----CC--STTCCCTTEEEEEETTTTC
T ss_pred cc-----hh--hCCcccCCCCEEEEeCccc
Confidence 93 22 2457888999999999875
No 170
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=86.18 E-value=7.5 Score=39.45 Aligned_cols=82 Identities=15% Similarity=0.115 Sum_probs=58.5
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
.+.++||.++|+.-++.+++.++...+. +..+..++|+.+..++...+. .......+|+|+|
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~~~v~~~hg~~~~~~R~~~~~-----------------~F~~g~~~vLVaT 348 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-DLPILEFHGKITQNKRTSLVK-----------------RFKKDESGILVCT 348 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-TSCEEEESTTSCHHHHHHHHH-----------------HHHHCSSEEEEEC
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-CCcEEEecCCCCHHHHHHHHH-----------------HhhcCCCeEEEEc
Confidence 3458999999999999999999887543 678899999987665533221 1223457899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcch
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDET 206 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEa 206 (515)
. .+. .++++.++++||.-..
T Consensus 349 ~-----~~~--~GiDip~v~~VI~~~~ 368 (579)
T 3sqw_A 349 D-----VGA--RGMDFPNVHEVLQIGV 368 (579)
T ss_dssp G-----GGT--SSCCCTTCCEEEEESC
T ss_pred c-----hhh--cCCCcccCCEEEEcCC
Confidence 3 222 4577888998886553
No 171
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=85.83 E-value=3.3 Score=37.99 Aligned_cols=77 Identities=21% Similarity=0.175 Sum_probs=54.6
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
+.++||.++++.-++.+++.+... ++.+..++|+.+..++...+. ..-....+|+|+|.
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~-----------------~f~~g~~~vLVaT~ 86 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMG-----------------AFRQGEVRVLVATD 86 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHH-----------------HHHHTSCCEEEECS
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HhhcCCceEEEEec
Confidence 447999999999998888887764 788999999988666543321 11234578999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 181 GRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
.+. .++++.++++||.=+
T Consensus 87 -----va~--~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 87 -----VAA--RGLDIPQVDLVVHYR 104 (300)
T ss_dssp -----TTT--CSTTCCCCSEEEESS
T ss_pred -----hhh--cCccccceeEEEEcC
Confidence 222 457788888888533
No 172
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.77 E-value=0.95 Score=39.62 Aligned_cols=47 Identities=17% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 58 a~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
++..++. .+..|.-+++.+|+|+|||......+...... +..++++.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~----~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRD----GDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHH----TCCEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHC----CCeEEEEE
Confidence 3444443 44567889999999999997644433333222 22566664
No 173
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=85.67 E-value=1.7 Score=35.20 Aligned_cols=20 Identities=15% Similarity=0.210 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.++.+++.+|+|+|||....
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999998543
No 174
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.65 E-value=1 Score=41.57 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=17.1
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.+.++++.+|+|+|||..+-.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~ 86 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALK 86 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 356799999999999986543
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.64 E-value=0.89 Score=38.01 Aligned_cols=20 Identities=20% Similarity=0.157 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
..++++.+|+|+|||..+..
T Consensus 43 ~~~vll~G~~G~GKT~la~~ 62 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEG 62 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHH
Confidence 56799999999999986443
No 176
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=85.19 E-value=1.2 Score=41.28 Aligned_cols=62 Identities=8% Similarity=-0.220 Sum_probs=39.0
Q ss_pred HHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 57 AVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 57 ~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
..+..++..+..|.-+++.|++|+|||..++-.+.....++ ..++|++-. .-..|+...+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g----~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND----DVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT----CEEEEEESS-SCHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC----CeEEEEECC-CCHHHHHHHHHH
Confidence 35666676666778899999999999986555444444332 367777643 223444444443
No 177
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=84.94 E-value=0.62 Score=41.41 Aligned_cols=55 Identities=18% Similarity=0.071 Sum_probs=33.1
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+..|.-+++.|++|+|||..++-.+.+.+.+. +..++|++-. .-..++.+.+...
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~---~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc---CCCceeeccc-CCHHHHHHHHHHc
Confidence 34567799999999999986554444444332 2247776533 2244555555443
No 178
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=84.74 E-value=0.27 Score=46.21 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=22.7
Q ss_pred hHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
|.+++..+...+..+.++++.+|+|+|||..+-
T Consensus 32 ~~~~~~~l~~~l~~~~~vll~G~pGtGKT~la~ 64 (331)
T 2r44_A 32 QKYMINRLLIGICTGGHILLEGVPGLAKTLSVN 64 (331)
T ss_dssp CHHHHHHHHHHHHHTCCEEEESCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHH
Confidence 444444443333457899999999999998543
No 179
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=84.63 E-value=1.7 Score=43.42 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=25.9
Q ss_pred HHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHH
Q 010196 41 VALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 41 ~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.++|. +.+.+.+-+...+. .|..+++.+|||||||..
T Consensus 237 ~~l~~~G~--~~~~~l~~l~~~v~---~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 237 IDLIEKGT--VPSGVLAYLWLAIE---HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp HHHHHTTS--SCHHHHHHHHHHHH---TTCCEEEEESTTSSHHHH
T ss_pred hhHHhcCC--CCHHHHHHHHHHHh---CCCEEEEECCCCCCHHHH
Confidence 44555663 34444444433332 478899999999999974
No 180
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.26 E-value=0.78 Score=45.23 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=17.5
Q ss_pred CCCCCEEEECCCCchhHHHhH
Q 010196 67 LFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~ 87 (515)
..++++++.+|+|+|||..+.
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEECCCcCCHHHHHH
Confidence 346789999999999998654
No 181
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.13 E-value=3.8 Score=42.41 Aligned_cols=80 Identities=16% Similarity=0.267 Sum_probs=58.1
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEe
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVA 178 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~ 178 (515)
.+.++||.++|+.-++.+.+.+.+. ++++..++|+.+..++...+ +.++ +..+|+||
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~------------------~~f~~g~~~VLva 495 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALI------------------RDLRLGHYDCLVG 495 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHH------------------HHHHTTSCSEEEE
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHH------------------HHhhcCCceEEEc
Confidence 3458999999999999988888876 67888888887765553221 2223 34799999
Q ss_pred CChHHHHHHhcCcCCCCCcceEEEEcchhH
Q 010196 179 TPGRLMDHINATRGFTLEHLCYLVVDETDR 208 (515)
Q Consensus 179 Tp~~l~~~l~~~~~~~~~~~~~vViDEah~ 208 (515)
|. .+ ..++++.++++||+=+++.
T Consensus 496 T~-----~l--~~GlDip~v~lVI~~d~d~ 518 (664)
T 1c4o_A 496 IN-----LL--REGLDIPEVSLVAILDADK 518 (664)
T ss_dssp SC-----CC--CTTCCCTTEEEEEETTTTS
T ss_pred cC-----hh--hcCccCCCCCEEEEeCCcc
Confidence 92 22 2457888899999888764
No 182
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=84.09 E-value=0.99 Score=44.84 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=27.8
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
.+.+++|.++||||||.+.-..+...+........+++++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 4679999999999999865554545454433333444444454
No 183
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.96 E-value=5.5 Score=33.84 Aligned_cols=74 Identities=11% Similarity=0.174 Sum_probs=51.2
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCC--ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----ccc-cCCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGEL--RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR-GMDVEG 403 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~--~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~~-GiDi~~ 403 (515)
+.++||.++++..+..+++.+...... +..+..++|+.+..+... .+ .+..+|+|+|.- +.. .+++.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~ 146 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDH 146 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCccc
Confidence 457999999999999998888765421 477888899887654322 22 356789999962 222 245667
Q ss_pred CCEEEE
Q 010196 404 VNNVVN 409 (515)
Q Consensus 404 v~~VI~ 409 (515)
+++||.
T Consensus 147 ~~~lVi 152 (206)
T 1vec_A 147 VQMIVL 152 (206)
T ss_dssp CCEEEE
T ss_pred CCEEEE
Confidence 777775
No 184
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=83.93 E-value=1.9 Score=37.94 Aligned_cols=76 Identities=11% Similarity=0.216 Sum_probs=46.4
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-----Cccc-cCCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMDVEG 403 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-----~~~~-GiDi~~ 403 (515)
.+.++||.++++..+..+++.++.++. .+..+..++|+.... ...+.+..+..+|+|+|. .+.. .+++..
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~ 173 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKW 173 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTT
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhcCCCCEEEECHHHHHHHHHhCCcCccc
Confidence 356899999999999999999877642 246677777776543 234445567789999994 2333 356667
Q ss_pred CCEEEE
Q 010196 404 VNNVVN 409 (515)
Q Consensus 404 v~~VI~ 409 (515)
+++||.
T Consensus 174 ~~~lVi 179 (237)
T 3bor_A 174 IKMFVL 179 (237)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 185
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.87 E-value=1.1 Score=38.91 Aligned_cols=33 Identities=18% Similarity=-0.046 Sum_probs=23.7
Q ss_pred HHHHHhC-CCCCCCCEEEECCCCchhHHHhHHHH
Q 010196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 58 a~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
.+..++. .+..|.-+++.+|+|+|||..+...+
T Consensus 8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~ 41 (220)
T 2cvh_A 8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTG 41 (220)
T ss_dssp HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 4455554 45567889999999999998655433
No 186
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=83.79 E-value=1 Score=39.88 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=32.6
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHH
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAA 123 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 123 (515)
+..|.-+++.+|+|+|||..++-.+...+.. +.+++++.-.. -..++.+.+..
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~----~~~v~~~~~e~-~~~~~~~~~~~ 72 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLKM----GEPGIYVALEE-HPVQVRQNMAQ 72 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHHHHT----TCCEEEEESSS-CHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHhc----CCeEEEEEccC-CHHHHHHHHHH
Confidence 3457788999999999998755444444332 33677775432 23455555543
No 187
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=83.76 E-value=0.54 Score=44.80 Aligned_cols=21 Identities=38% Similarity=0.466 Sum_probs=17.5
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.+.++++.+|+|+|||..+-.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ 70 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAET 70 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 467899999999999986543
No 188
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=83.67 E-value=2 Score=38.59 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=31.3
Q ss_pred HHHHHHHHhCCCCCcchhhHHH-HHHHhCCCCC-CCCEEEECCCCchhHHHhH
Q 010196 37 PRLKVALQNMGISSLFPVQVAV-WQETIGPGLF-ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 37 ~~l~~~l~~~~~~~~~~~Q~~a-~~~~~~~~~~-~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+.|+-.|+. |.+... +...+..-.. .+.+++.+|+|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3788888888874 445333 2333443212 2359999999999998654
No 189
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=83.46 E-value=1.1 Score=45.04 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=30.2
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccH
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTR 111 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~ 111 (515)
..+++|.+.||||||.+.-..+...+........+++++=|-.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999999766556655555433445566666663
No 190
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=83.13 E-value=0.72 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=17.2
Q ss_pred CCCCCCEEEECCCCchhHHHh
Q 010196 66 GLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~ 86 (515)
+..|.-+++.+|||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 345778999999999999853
No 191
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=83.04 E-value=2.5 Score=37.37 Aligned_cols=75 Identities=11% Similarity=0.205 Sum_probs=53.2
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-----Ccc-ccCCCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMT-RGMDVEGV 404 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-----~~~-~GiDi~~v 404 (515)
+.++||.++++..+..+.+.+.... ..+..+..++|+.+.......+. . ..+|+|+|. .+. ..+++.++
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~I~v~Tp~~l~~~l~~~~~~~~~~ 177 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE---R-GVEICIATPGRLIDFLECGKTNLRRT 177 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH---H-CCSEEEECHHHHHHHHHHTSCCCTTC
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc---C-CCCEEEECHHHHHHHHHcCCCCcccc
Confidence 5679999999999999988776642 12478888999988766554443 2 478999995 222 23567778
Q ss_pred CEEEEc
Q 010196 405 NNVVNY 410 (515)
Q Consensus 405 ~~VI~~ 410 (515)
++||.-
T Consensus 178 ~~lViD 183 (242)
T 3fe2_A 178 TYLVLD 183 (242)
T ss_dssp CEEEET
T ss_pred cEEEEe
Confidence 887753
No 192
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.77 E-value=1.2 Score=39.98 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.++++.+|+|+|||..+-
T Consensus 28 ~~~~vll~G~~GtGKt~la~ 47 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIAS 47 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHH
T ss_pred CCCCEEEECCCCCcHHHHHH
Confidence 46789999999999998543
No 193
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.38 E-value=0.29 Score=48.73 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=22.5
Q ss_pred hHHHHHHHhCCCCCCCCEEEECCCCchhHHHh
Q 010196 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~ 86 (515)
|..++..+...+..+.++++.+|+|+|||..+
T Consensus 27 q~~~i~~l~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 27 RSHAIRLCLLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp CHHHHHHHHHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHHHHHHHHHhcCCeeEeecCchHHHHHHH
Confidence 44444444433445889999999999999853
No 194
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.24 E-value=1.4 Score=38.63 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.||+|+|||..+.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 36789999999999998644
No 195
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.04 E-value=1.2 Score=42.88 Aligned_cols=41 Identities=17% Similarity=0.371 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRD 112 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~ 112 (515)
.+.++++.+|||+|||...-..+... .. .+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~-~~---~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLRE-YM---QGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHH-HT---TTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHH-HH---CCCEEEEEeCCcC
Confidence 46789999999999998654433333 22 3446888878755
No 196
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.02 E-value=4.6 Score=34.36 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=51.4
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----cc-ccCCCCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT-RGMDVEGVN 405 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~-~GiDi~~v~ 405 (515)
+.++||.++++..+..+.+.+..... ...+..++|+.+.......+. ...+|+|+|.- +. ..+++.+++
T Consensus 72 ~~~~lil~P~~~L~~q~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 146 (207)
T 2gxq_A 72 KPRALVLTPTRELALQVASELTAVAP-HLKVVAVYGGTGYGKQKEALL----RGADAVVATPGRALDYLRQGVLDLSRVE 146 (207)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHCT-TSCEEEECSSSCSHHHHHHHH----HCCSEEEECHHHHHHHHHHTSSCCTTCS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHHhh-cceEEEEECCCChHHHHHHhh----CCCCEEEECHHHHHHHHHcCCcchhhce
Confidence 56899999999999999999987653 267778888877654433332 25789999951 12 235666777
Q ss_pred EEEE
Q 010196 406 NVVN 409 (515)
Q Consensus 406 ~VI~ 409 (515)
+||.
T Consensus 147 ~iVi 150 (207)
T 2gxq_A 147 VAVL 150 (207)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7775
No 197
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=81.85 E-value=7.7 Score=37.69 Aligned_cols=74 Identities=14% Similarity=0.164 Sum_probs=54.1
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChH
Q 010196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (515)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~ 182 (515)
++||.++++.-++.+++.+... +..+..++|+.+..++...+. .......+|+|+|.
T Consensus 302 ~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~-----------------~F~~g~~~vLvaT~-- 358 (434)
T 2db3_A 302 GTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALR-----------------DFKNGSMKVLIATS-- 358 (434)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHH-----------------HHHTSSCSEEEECG--
T ss_pred CEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHH-----------------HHHcCCCcEEEEch--
Confidence 4999999999999998888775 678899999987665543221 12234579999993
Q ss_pred HHHHHhcCcCCCCCcceEEEEc
Q 010196 183 LMDHINATRGFTLEHLCYLVVD 204 (515)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vViD 204 (515)
.+. .++++.++++||.-
T Consensus 359 ---v~~--rGlDi~~v~~VI~~ 375 (434)
T 2db3_A 359 ---VAS--RGLDIKNIKHVINY 375 (434)
T ss_dssp ---GGT--SSCCCTTCCEEEES
T ss_pred ---hhh--CCCCcccCCEEEEE
Confidence 222 45788889988853
No 198
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=81.79 E-value=4.8 Score=38.54 Aligned_cols=74 Identities=19% Similarity=0.299 Sum_probs=54.5
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~T 179 (515)
..++||.++++.-+..+++.+... +..+..++|+.+..++...+ ..+ ....+|+|+|
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~------------------~~f~~g~~~vlv~T 323 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVI------------------ERFREGKEKVLVTT 323 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHH------------------HHHHTTSCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHH------------------HHHHCCCCcEEEEc
Confidence 347999999999999999988876 67788999998766653322 222 2347899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEE
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
. .+. .++++.++++||.
T Consensus 324 ~-----~~~--~Gidip~~~~Vi~ 340 (412)
T 3fht_A 324 N-----VCA--RGIDVEQVSVVIN 340 (412)
T ss_dssp G-----GGT--SSCCCTTEEEEEE
T ss_pred C-----ccc--cCCCccCCCEEEE
Confidence 3 222 4577888999884
No 199
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=81.45 E-value=1.7 Score=42.52 Aligned_cols=48 Identities=10% Similarity=-0.220 Sum_probs=33.8
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.+..++..+..|.-+++.|++|+|||..++-.+.+.+.. +.+++|++-
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~----g~~vl~fSl 233 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN----DDVVNLHSL 233 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT----TCEEEEECS
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc----CCEEEEEEC
Confidence 456666666677779999999999998765555554443 336788764
No 200
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=81.30 E-value=2 Score=52.23 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=37.7
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~ 88 (515)
|...+.+.+.++|+ .+.+.+..=+-++.+.+.....+++.||||+|||.++-.
T Consensus 873 l~~ai~~~~~~~~L-~~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHL-VTKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-ccCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34566677778898 566666554444555555677899999999999998653
No 201
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=81.28 E-value=3.1 Score=36.34 Aligned_cols=74 Identities=11% Similarity=0.136 Sum_probs=53.2
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC--CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc------cccCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVE 402 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~------~~GiDi~ 402 (515)
.+.++||.++++..+..+.+.+..++. .+..+..++|+.+...+...+ ...+|+|+|.-- ...+++.
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~ 165 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPG 165 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGG
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccc
Confidence 356899999999999999999887642 257888899998876554433 257899999631 1235666
Q ss_pred CCCEEEE
Q 010196 403 GVNNVVN 409 (515)
Q Consensus 403 ~v~~VI~ 409 (515)
++++||.
T Consensus 166 ~~~~lVi 172 (230)
T 2oxc_A 166 SIRLFIL 172 (230)
T ss_dssp GCCEEEE
T ss_pred cCCEEEe
Confidence 6777765
No 202
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=81.20 E-value=6.9 Score=39.83 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=52.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHH--hcCCceEEEecC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAF--REGKIQVLVSSD 393 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f--~~g~~~vLv~T~ 393 (515)
.+.+||.+|++..++...+.|...+ +.+..++|+++..++..++..+ ..+..+|+++|+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tp 144 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLG---ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTP 144 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHT---CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcC---CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEECh
Confidence 5799999999999999999998875 8899999999999988888888 467899999997
No 203
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=80.94 E-value=3.4 Score=41.42 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=53.3
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~ 393 (515)
.+.+||.+|++..+....+.|...+ +.+..++++.+..++...+..+..|..+|+++|+
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~g---i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp 123 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANG---VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP 123 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTT---CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH
T ss_pred CCCEEEECChHHHHHHHHHHHHHcC---CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH
Confidence 5789999999999999999998765 7889999999999988999999999999999985
No 204
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=80.85 E-value=0.5 Score=43.65 Aligned_cols=19 Identities=32% Similarity=0.464 Sum_probs=16.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.++++.+|+|+|||..+-
T Consensus 50 ~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 6789999999999998644
No 205
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=80.58 E-value=6.6 Score=37.23 Aligned_cols=78 Identities=13% Similarity=0.225 Sum_probs=56.3
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~T 179 (515)
..++||.++++.-+..+++.++.. +..+..++|+.+..++...+ ..++ ...+|+|+|
T Consensus 243 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~------------------~~f~~g~~~vlv~T 300 (395)
T 3pey_A 243 IGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLI------------------DDFREGRSKVLITT 300 (395)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHH------------------HHHHTTSCCEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHH------------------HHHHCCCCCEEEEC
Confidence 457999999999999998888875 67788999998766553322 2222 347899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
. .+. .++++.++++||.-...
T Consensus 301 ~-----~~~--~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 301 N-----VLA--RGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp G-----GGS--SSCCCTTEEEEEESSCC
T ss_pred C-----hhh--cCCCcccCCEEEEcCCC
Confidence 3 222 45788889999865443
No 206
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=80.31 E-value=14 Score=33.83 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhHHH
Q 010196 70 RDLCINSPTGSGKTLSYALP 89 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~ 89 (515)
+-+++.+|+|+|||......
T Consensus 105 ~vi~ivG~~GsGKTTl~~~L 124 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKL 124 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEEcCCCChHHHHHHHH
Confidence 44778999999999865543
No 207
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=80.18 E-value=0.85 Score=42.52 Aligned_cols=19 Identities=32% Similarity=0.396 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
++-++|.+|||+|||....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568899999999998644
No 208
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=80.00 E-value=7.3 Score=36.92 Aligned_cols=80 Identities=13% Similarity=0.112 Sum_probs=56.4
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
.+.++||.++++.-+..+++.+... +..+..++|+.+..++...+. ........|+|+|
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 307 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQ-----------------QFKDFQRRILVAT 307 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHH-----------------HHHTTCCSEEEES
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHH-----------------HHhcCCCcEEEEC
Confidence 3458999999999999999888875 678889999887655533221 1122357899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
. .+ ..++++..+++||.-..-
T Consensus 308 ~-----~~--~~Gidi~~~~~Vi~~~~p 328 (391)
T 1xti_A 308 N-----LF--GRGMDIERVNIAFNYDMP 328 (391)
T ss_dssp C-----CC--SSCBCCTTEEEEEESSCC
T ss_pred C-----hh--hcCCCcccCCEEEEeCCC
Confidence 2 12 245778889998875543
No 209
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=79.94 E-value=0.91 Score=38.70 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
++-+++.+|||+|||..+
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 567999999999999753
No 210
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=79.45 E-value=2.4 Score=39.67 Aligned_cols=48 Identities=13% Similarity=-0.084 Sum_probs=32.6
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.+..++..+..|.-+++.|++|+|||..++-.+..... .+..++|++.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----~g~~Vl~fSl 82 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----DDRGVAVFSL 82 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----TTCEEEEEES
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----cCCeEEEEeC
Confidence 45556666666777999999999999865554444433 2336777754
No 211
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=79.44 E-value=1.9 Score=39.84 Aligned_cols=17 Identities=35% Similarity=0.600 Sum_probs=14.7
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
++++.||+|+|||..+.
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999998643
No 212
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.14 E-value=0.91 Score=38.42 Aligned_cols=16 Identities=38% Similarity=0.775 Sum_probs=13.8
Q ss_pred CCEEEECCCCchhHHH
Q 010196 70 RDLCINSPTGSGKTLS 85 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~ 85 (515)
+-+++.||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999974
No 213
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=79.08 E-value=1.5 Score=42.40 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=25.3
Q ss_pred hhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHh
Q 010196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTL 94 (515)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l 94 (515)
+.+..++..++. ..+.-+++.+|||||||.. +-.++..+
T Consensus 153 ~~~~~~L~~l~~--~~ggii~I~GpnGSGKTTl-L~allg~l 191 (418)
T 1p9r_A 153 AHNHDNFRRLIK--RPHGIILVTGPTGSGKSTT-LYAGLQEL 191 (418)
T ss_dssp HHHHHHHHHHHT--SSSEEEEEECSTTSCHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHH--hcCCeEEEECCCCCCHHHH-HHHHHhhc
Confidence 445556666542 3456689999999999985 33344433
No 214
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=78.91 E-value=1.3 Score=37.13 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|+-+++.+|+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4777899999999999853
No 215
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=78.62 E-value=1.3 Score=40.74 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.++.+++.+|+|+|||..+-
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ 67 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAK 67 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHH
T ss_pred CCceEEEECCCCcCHHHHHH
Confidence 46789999999999998644
No 216
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=78.59 E-value=3.8 Score=45.64 Aligned_cols=56 Identities=20% Similarity=0.213 Sum_probs=43.4
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhc--------ccCcccEEEEcccHHHHHHHHHHHHHhc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNR--------AVRCLRALVVLPTRDLALQVKDVFAAIA 125 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~--------~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 125 (515)
...+|.|.-|||||.+...-++..+... +.....+|+|+=|++=+.++.+.+....
T Consensus 17 g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L 80 (1180)
T 1w36_B 17 GERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNI 80 (1180)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHH
Confidence 3459999999999998777777777542 2334579999999998888888887654
No 217
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=78.54 E-value=10 Score=36.07 Aligned_cols=76 Identities=14% Similarity=0.211 Sum_probs=54.6
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~T 179 (515)
..++||.++++.-+..+++.++.. +..+..++|+.+..++...+ ..+ ....+|+|+|
T Consensus 258 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~------------------~~f~~g~~~vLv~T 315 (400)
T 1s2m_A 258 INQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVF------------------HEFRQGKVRTLVCS 315 (400)
T ss_dssp CSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHH------------------HHHHTTSSSEEEES
T ss_pred CCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHH------------------HHHhcCCCcEEEEc
Confidence 347999999999999999888876 67888999988766553322 222 2347899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
. .+ ..++++..+++||.-+
T Consensus 316 ~-----~~--~~Gidip~~~~Vi~~~ 334 (400)
T 1s2m_A 316 D-----LL--TRGIDIQAVNVVINFD 334 (400)
T ss_dssp S-----CS--SSSCCCTTEEEEEESS
T ss_pred C-----cc--ccCCCccCCCEEEEeC
Confidence 3 22 2457788888888543
No 218
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.51 E-value=1.3 Score=39.52 Aligned_cols=20 Identities=30% Similarity=0.433 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.+|+|+|||..+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35779999999999998644
No 219
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=78.51 E-value=1.5 Score=40.56 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.++++.+|+|+|||..+-
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr 43 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVAR 43 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHH
T ss_pred CCCcEEEECCCCchHHHHHH
Confidence 46789999999999998643
No 220
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=78.34 E-value=1.8 Score=41.04 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.++.+++.||+|+|||..+..
T Consensus 69 ~~~~vLl~GppGtGKT~la~~ 89 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMG 89 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 357899999999999986543
No 221
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.33 E-value=1.8 Score=41.44 Aligned_cols=20 Identities=30% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.+|+|+|||+.+-
T Consensus 181 ~prGvLL~GPPGTGKTllAk 200 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLAR 200 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHH
T ss_pred CCCceEEeCCCCCCHHHHHH
Confidence 46889999999999998643
No 222
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=78.33 E-value=1.4 Score=40.10 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.++.+++.+|+|+|||..+-
T Consensus 50 ~~~~~ll~G~~GtGKT~la~ 69 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAK 69 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 46789999999999998643
No 223
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=78.32 E-value=2.3 Score=40.07 Aligned_cols=49 Identities=18% Similarity=0.072 Sum_probs=31.3
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
.+..++. .+..|.-+++.+|+|+|||..++..+...... +.+++|+.-.
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~----g~~vlyi~~E 98 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAA----GGIAAFIDAE 98 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHT----TCCEEEEESS
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhC----CCeEEEEECC
Confidence 3444454 34457779999999999998755544444332 3367777543
No 224
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.79 E-value=1.7 Score=42.11 Aligned_cols=20 Identities=30% Similarity=0.434 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.+|+|+|||+.+-
T Consensus 214 ~prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCCeeEEECcCCCCHHHHHH
Confidence 46889999999999998643
No 225
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=77.69 E-value=1.1 Score=41.21 Aligned_cols=19 Identities=37% Similarity=0.462 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
++-++|.+|||+|||..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHH
Confidence 3457889999999998644
No 226
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=77.61 E-value=6.8 Score=37.52 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=54.1
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCCh
Q 010196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPG 181 (515)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~ 181 (515)
.++||.++++.-++.+++.+... ++.+..++|+.+..++...+. ........|+|+|.
T Consensus 277 ~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~-----------------~f~~g~~~vlv~T~- 334 (410)
T 2j0s_A 277 TQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMK-----------------EFRSGASRVLISTD- 334 (410)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHH-----------------HHHHTSSCEEEECG-
T ss_pred CcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHH-----------------HHHCCCCCEEEECC-
Confidence 37999999999999988888775 678889999987665533221 11223578999993
Q ss_pred HHHHHHhcCcCCCCCcceEEEEcc
Q 010196 182 RLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 182 ~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
.+. .++++.++++||.-.
T Consensus 335 ----~~~--~Gidi~~v~~Vi~~~ 352 (410)
T 2j0s_A 335 ----VWA--RGLDVPQVSLIINYD 352 (410)
T ss_dssp ----GGS--SSCCCTTEEEEEESS
T ss_pred ----hhh--CcCCcccCCEEEEEC
Confidence 222 457788899888543
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=77.57 E-value=2.8 Score=39.63 Aligned_cols=48 Identities=19% Similarity=0.088 Sum_probs=31.7
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.+..++. .+..+.-+++.+++|+|||..++..+.+.... +.+++|+..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~----g~~vlyid~ 99 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDA 99 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEEES
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHC----CCeEEEEeC
Confidence 3555553 34456779999999999999766544444332 236777765
No 228
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.17 E-value=2 Score=35.80 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.++.+++.+++|+|||...-
T Consensus 10 ~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHH
Confidence 46789999999999998644
No 229
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=77.16 E-value=11 Score=36.65 Aligned_cols=100 Identities=18% Similarity=0.144 Sum_probs=59.9
Q ss_pred CCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeec--------CCchHHHHHHHh
Q 010196 78 TGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVG--------QSSIADEISELI 149 (515)
Q Consensus 78 TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g--------~~~~~~~~~~~~ 149 (515)
..++|.... .-++...... ..+.++||.++++.-+..+.+.++.. ++++..++| +.+..++...+
T Consensus 340 ~~~~k~~~l-~~~l~~~~~~-~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~~~~- 412 (494)
T 1wp9_A 340 LDHPKMDKL-KEIIREQLQR-KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQKLIL- 412 (494)
T ss_dssp CSCHHHHHH-HHHHHHHHHH-CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHHHHH-
T ss_pred CCChHHHHH-HHHHHHHhcc-CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHHHHH-
Confidence 456666542 3333332211 23458999999999999888888876 678888888 44332222111
Q ss_pred ccCcccccccCCchhHHHhhccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 150 KRPKLEAGICYDPEDVLQELQSAVDILVATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
...-....+|+|+|. . +. .++++...++||+-+..
T Consensus 413 ----------------~~F~~~~~~vLv~T~-~----~~--~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 413 ----------------DEFARGEFNVLVATS-V----GE--EGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp ----------------HHHHHTSCSEEEECG-G----GG--GGGGSTTCCEEEESSCC
T ss_pred ----------------HHHhcCCceEEEECC-c----cc--cCCCchhCCEEEEeCCC
Confidence 112234478999992 2 22 34677788888866544
No 230
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=76.99 E-value=1.3 Score=40.67 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
+-++|.+|||+|||..+.
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 447889999999998644
No 231
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=76.83 E-value=9 Score=35.80 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=54.2
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeC
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVAT 179 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~T 179 (515)
.+.++||.++++.-+..+++.+++. +..+..++|+.+..++...+. .......+|+|+|
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~-----------------~f~~~~~~vlv~T 295 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIR-----------------LFKQKKIRILIAT 295 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHH-----------------HHHTTSSSEEEEC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHH-----------------HHHcCCCeEEEEC
Confidence 3457999999999999998888876 678889999887665533221 1122357899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
. .+. .++++.++++||.-.
T Consensus 296 ~-----~~~--~Gid~~~~~~Vi~~~ 314 (367)
T 1hv8_A 296 D-----VMS--RGIDVNDLNCVINYH 314 (367)
T ss_dssp T-----THH--HHCCCSCCSEEEESS
T ss_pred C-----hhh--cCCCcccCCEEEEec
Confidence 3 222 236677788888644
No 232
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=76.77 E-value=1.8 Score=51.92 Aligned_cols=53 Identities=21% Similarity=0.125 Sum_probs=35.6
Q ss_pred CCHHHHHHHHhCCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHH
Q 010196 35 LDPRLKVALQNMGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 35 l~~~l~~~l~~~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~ 88 (515)
+...+.+.+.+.|+ .+.+.+..-+..+...+.....+++.||||+|||.++-.
T Consensus 890 l~~~i~~~~~~~~l-~~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGF-SMSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCC-cccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 44566777777887 456655443333333333467899999999999997654
No 233
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=76.74 E-value=1.9 Score=36.85 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=16.7
Q ss_pred CEEEECCCCchhHHHhHHHHHH
Q 010196 71 DLCINSPTGSGKTLSYALPIVQ 92 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~ 92 (515)
-.++.|+.|||||..+...+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999975443333
No 234
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=76.67 E-value=1.5 Score=37.39 Aligned_cols=20 Identities=20% Similarity=0.129 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.++.+++.+++|||||..+-
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHH
Confidence 46789999999999998644
No 235
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=76.64 E-value=1.5 Score=36.80 Aligned_cols=20 Identities=20% Similarity=0.192 Sum_probs=16.6
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
++.+++.+++|||||..+-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999986543
No 236
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=76.46 E-value=1.3 Score=36.85 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.-+++.+++|||||.+.-
T Consensus 3 ~~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 5678999999999998543
No 237
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=76.45 E-value=0.49 Score=43.82 Aligned_cols=18 Identities=33% Similarity=0.351 Sum_probs=15.3
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+++.+|+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999998654
No 238
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.44 E-value=1.4 Score=40.32 Aligned_cols=19 Identities=37% Similarity=0.562 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
++.+++.||+|+|||..+-
T Consensus 54 ~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 5789999999999998643
No 239
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.35 E-value=2.1 Score=41.52 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.||+|+|||+.+-
T Consensus 205 ~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46789999999999998643
No 240
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=76.34 E-value=1.6 Score=37.67 Aligned_cols=19 Identities=21% Similarity=0.282 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|+-+++.+|+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999999853
No 241
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=76.24 E-value=2.9 Score=41.71 Aligned_cols=59 Identities=5% Similarity=-0.109 Sum_probs=36.2
Q ss_pred HHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHH
Q 010196 59 WQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVF 121 (515)
Q Consensus 59 ~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~ 121 (515)
+..++..+..|.-++|.|++|+|||..++-.+.+.... .+.+++|+.---. ..|+...+
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~---~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTA---MGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTT---SCCCEEEEESSSC-HHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHh---cCCcEEEEeccCC-HHHHHHHH
Confidence 44555556677789999999999998655544444332 1336777754322 33444443
No 242
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=76.24 E-value=4 Score=39.92 Aligned_cols=49 Identities=12% Similarity=-0.128 Sum_probs=32.8
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.+..++..+..|.-+++.|++|+|||..++-.+...... .+..++|+..
T Consensus 189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~---~g~~vl~~sl 237 (444)
T 2q6t_A 189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALK---EGVGVGIYSL 237 (444)
T ss_dssp HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT---TCCCEEEEES
T ss_pred hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh---CCCeEEEEEC
Confidence 456666666677778999999999998655544444432 1335777754
No 243
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.04 E-value=1.6 Score=39.97 Aligned_cols=19 Identities=26% Similarity=0.258 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
...+++.+|+|+|||..+-
T Consensus 36 p~~lLl~GppGtGKT~la~ 54 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCE 54 (293)
T ss_dssp CSEEEEEECTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3578899999999998644
No 244
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.99 E-value=2.1 Score=41.60 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.+|+|+|||+.+-
T Consensus 214 ~prGvLL~GPPGtGKTllAk 233 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAK 233 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 46889999999999998643
No 245
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=75.85 E-value=3.3 Score=35.85 Aligned_cols=74 Identities=11% Similarity=0.214 Sum_probs=45.9
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc------cccCCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVEG 403 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~------~~GiDi~~ 403 (515)
.+.++||.++++..+..+++.+.... ..+..+..++|+.+..+.... +. +.+|+|+|.-. ...+++..
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~ 155 (224)
T 1qde_A 81 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDK 155 (224)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999998887653 235778888888765443322 22 37899998521 23456667
Q ss_pred CCEEEE
Q 010196 404 VNNVVN 409 (515)
Q Consensus 404 v~~VI~ 409 (515)
+++||.
T Consensus 156 ~~~iVi 161 (224)
T 1qde_A 156 IKMFIL 161 (224)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 246
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=75.72 E-value=14 Score=32.95 Aligned_cols=75 Identities=15% Similarity=0.212 Sum_probs=52.6
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-----Cc--cccCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AM--TRGMDVE 402 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-----~~--~~GiDi~ 402 (515)
.+.++||.++++..+..+++.++.... .+..+..+.|+......... +..+ .+|+|+|. .+ ..++++.
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~ 200 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQK---LGNG-INIIVATPGRLLDHMQNTPGFMYK 200 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHHCTTCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHH---hcCC-CCEEEEcHHHHHHHHHccCCcccc
Confidence 356799999999999999998877542 34667788888776544333 3334 78999994 11 1246777
Q ss_pred CCCEEEE
Q 010196 403 GVNNVVN 409 (515)
Q Consensus 403 ~v~~VI~ 409 (515)
++.+||.
T Consensus 201 ~l~~lVi 207 (262)
T 3ly5_A 201 NLQCLVI 207 (262)
T ss_dssp TCCEEEE
T ss_pred cCCEEEE
Confidence 7887775
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=75.68 E-value=2.9 Score=36.77 Aligned_cols=33 Identities=12% Similarity=-0.139 Sum_probs=22.7
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHH
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
+..++. .+..|.-+++.+|+|+|||..+...+.
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 344442 334577899999999999986554444
No 248
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=75.31 E-value=4.3 Score=39.82 Aligned_cols=49 Identities=6% Similarity=-0.144 Sum_probs=33.3
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
.+..+...+..|.-+++.|++|+|||..++-.+....... +..++|+..
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~---g~~Vl~~s~ 240 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKT---NENVAIFSL 240 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHS---SCCEEEEES
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhC---CCcEEEEEC
Confidence 5666676666778899999999999986555444443321 235777753
No 249
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=75.20 E-value=2.2 Score=36.59 Aligned_cols=21 Identities=24% Similarity=0.205 Sum_probs=17.7
Q ss_pred CCCCCCEEEECCCCchhHHHh
Q 010196 66 GLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~ 86 (515)
+..++-+++.+|+|+|||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456888999999999999853
No 250
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=75.18 E-value=2.5 Score=40.05 Aligned_cols=18 Identities=44% Similarity=0.613 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|..+++.+|||||||..
T Consensus 174 ~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTL 191 (361)
T ss_dssp TTCCEEEEESSSSCHHHH
T ss_pred cCCEEEEECCCCCCHHHH
Confidence 588999999999999974
No 251
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=75.07 E-value=1.6 Score=40.72 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+++++.+|+|+|||..+-
T Consensus 51 ~~~vLl~GppGtGKT~la~ 69 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAK 69 (322)
T ss_dssp CCEEEEECSSSSCHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4679999999999998644
No 252
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=75.02 E-value=2.1 Score=43.62 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHH
Q 010196 71 DLCINSPTGSGKTLS 85 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~ 85 (515)
++++.||+|+|||..
T Consensus 329 ~vLL~GppGtGKT~L 343 (595)
T 3f9v_A 329 HILIIGDPGTAKSQM 343 (595)
T ss_dssp CEEEEESSCCTHHHH
T ss_pred ceEEECCCchHHHHH
Confidence 899999999999984
No 253
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=74.97 E-value=1.6 Score=40.73 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 45 ~~~iLL~GppGtGKT~la~ 63 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAK 63 (322)
T ss_dssp CSEEEEESSSSSCHHHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4789999999999998644
No 254
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=74.94 E-value=9.3 Score=33.74 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=51.1
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----c-cccCCCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----M-TRGMDVEGV 404 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~-~~GiDi~~v 404 (515)
+.++||.++++..+..+.+.+...+ ..+..+..++|+.+.......+ ....+|+|+|.- + ...+++.++
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 3589999999999999988887653 2346777888887764433222 346789999962 1 123567777
Q ss_pred CEEEE
Q 010196 405 NNVVN 409 (515)
Q Consensus 405 ~~VI~ 409 (515)
++||.
T Consensus 176 ~~lVi 180 (253)
T 1wrb_A 176 KYIVL 180 (253)
T ss_dssp CEEEE
T ss_pred CEEEE
Confidence 77775
No 255
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=74.72 E-value=1.7 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.539 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4679999999999998643
No 256
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.64 E-value=4.5 Score=39.39 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=17.0
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+|+.+|+|+|||+.+-
T Consensus 242 pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHH
Confidence 46889999999999998643
No 257
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=74.55 E-value=3.8 Score=37.41 Aligned_cols=48 Identities=10% Similarity=-0.050 Sum_probs=30.1
Q ss_pred HHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 58 VWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 58 a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
++..+...+..|.-+++.||+|+|||......+...... .+..++++.
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~ 71 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAM 71 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEE
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEe
Confidence 455556556678889999999999998654433322222 122566664
No 258
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=74.47 E-value=10 Score=32.93 Aligned_cols=74 Identities=12% Similarity=0.191 Sum_probs=50.5
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----ccc--cCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTR--GMDVE 402 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~~--GiDi~ 402 (515)
.+.++||.++++..+..+.+.+...+. .+..+..++|+.+.......+ +..+|+|+|.- +.. .+++.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~ 170 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHAT 170 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCT
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccc
Confidence 356899999999999999998887652 346788889987754443332 46789999952 112 35666
Q ss_pred CCCEEEE
Q 010196 403 GVNNVVN 409 (515)
Q Consensus 403 ~v~~VI~ 409 (515)
++++||.
T Consensus 171 ~~~~lVi 177 (236)
T 2pl3_A 171 DLQMLVL 177 (236)
T ss_dssp TCCEEEE
T ss_pred cccEEEE
Confidence 7777775
No 259
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=73.92 E-value=2.3 Score=36.29 Aligned_cols=19 Identities=16% Similarity=0.260 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|+-+++.+|+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5777899999999999853
No 260
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=73.92 E-value=3.5 Score=35.92 Aligned_cols=26 Identities=19% Similarity=0.309 Sum_probs=19.4
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
++++.++.|+|||..++-.+......
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 58899999999999866555544433
No 261
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=76.02 E-value=0.67 Score=38.56 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=49.5
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~T 179 (515)
+.++||.++++..+..+++.++.. ++.+..++|+.+..+....+ ..+ ....+|+|+|
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~------------------~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAI------------------KRLTEGRVNVLVAT 87 (170)
Confidence 347999999999988888887765 67788888887654432211 112 2346899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
. .+. .++++..+++||.-+
T Consensus 88 ~-----~~~--~Gid~~~~~~Vi~~~ 106 (170)
T 2yjt_D 88 D-----VAA--RGIDIPDVSHVFNFD 106 (170)
Confidence 2 222 345666777777533
No 262
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.78 E-value=2.1 Score=48.89 Aligned_cols=45 Identities=20% Similarity=0.104 Sum_probs=31.9
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
+|+-+.+.+|.|||||..++..+.+.... +..++++.+-.+|...
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~----g~~~~~i~~e~~~~~~ 1474 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAEHALDPI 1474 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTTSCCCHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhc----CCeEEEEecCCCCCHH
Confidence 45779999999999999765544443333 4478888887666544
No 263
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=73.63 E-value=2 Score=40.68 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 5689999999999998654
No 264
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=73.56 E-value=2.1 Score=40.88 Aligned_cols=20 Identities=40% Similarity=0.559 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
...++++.+|+|+|||..+-
T Consensus 71 ~~~~ill~Gp~GtGKT~la~ 90 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQ 90 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCCCEEEECCCCCCHHHHHH
Confidence 35689999999999998654
No 265
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=73.45 E-value=2.1 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=15.1
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|+-+.+.+|+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999853
No 266
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=73.39 E-value=3.2 Score=38.78 Aligned_cols=18 Identities=33% Similarity=0.488 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|..+++.+|||||||..
T Consensus 170 ~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HTCCEEEEESTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 488999999999999973
No 267
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.24 E-value=2.8 Score=40.42 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.+|+|+|||+.+-
T Consensus 215 ~prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHH
T ss_pred CCCCCceECCCCchHHHHHH
Confidence 36889999999999998643
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=73.22 E-value=1.7 Score=36.58 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+++.+|+|||||..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CTTEEEEEEECTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3577799999999999984
No 269
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=73.17 E-value=1.9 Score=38.54 Aligned_cols=17 Identities=41% Similarity=0.194 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
-+++.+|||||||..+.
T Consensus 3 li~I~G~~GSGKSTla~ 19 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAI 19 (253)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 46899999999998543
No 270
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=72.94 E-value=17 Score=33.13 Aligned_cols=36 Identities=14% Similarity=0.065 Sum_probs=21.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+.-+++.+++|+|||......+... .. .+.+++++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~-~~---~g~~v~l~~ 133 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFY-KK---KGFKVGLVG 133 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHH-HH---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HH---CCCeEEEEe
Confidence 3457788999999998655433322 22 233566653
No 271
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.90 E-value=3 Score=38.98 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=16.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
..++++.+|+|+|||..+.
T Consensus 55 ~~~vll~G~~GtGKT~la~ 73 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLAN 73 (338)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 4689999999999998643
No 272
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=72.81 E-value=1.4 Score=41.35 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=14.6
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
++++.||+|+|||..+.
T Consensus 48 ~~ll~Gp~G~GKTtla~ 64 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIV 64 (340)
T ss_dssp CEEEECSSSSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 48999999999998644
No 273
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=72.65 E-value=1.6 Score=36.04 Aligned_cols=17 Identities=29% Similarity=0.255 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
-+++.|++|||||..+-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=72.56 E-value=2.6 Score=35.34 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.+++|||||.+.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46789999999999998643
No 275
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=72.39 E-value=23 Score=34.11 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=21.8
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
++-+++.+++|+|||......+. .+.. .+.+++++.
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~-~l~~---~g~~Vllvd 133 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL-YYKG---KGRRPLLVA 133 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH-HHHT---TTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH---cCCeEEEee
Confidence 34577889999999987554333 2222 233566653
No 276
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=72.36 E-value=5.3 Score=36.62 Aligned_cols=87 Identities=11% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCcHH-HHHHHHHhc----CCCeEEEEcCChhhHHHHHHHHhhcCC--CceeEEEccCccCHHHHHHHHHHHhcCCceEE
Q 010196 317 KLKPL-YLVALLQSL----GEEKCIVFTSSVESTHRLCTLLNHFGE--LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVL 389 (515)
Q Consensus 317 ~~k~~-~l~~~l~~~----~~~~~lVf~~s~~~~~~l~~~L~~~~~--~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vL 389 (515)
..|.. ++..++... ...++||.++++..+..+++.+..++. .+..+....|+...... .....+|+
T Consensus 142 sGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Il 214 (300)
T 3fmo_B 142 TGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIV 214 (300)
T ss_dssp SSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTT-------CCCCCSEE
T ss_pred CCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhh-------hcCCCCEE
Confidence 34443 344455433 234799999999999999888877653 24566666666543221 13456899
Q ss_pred EecCCc------c-ccCCCCCCCEEEEc
Q 010196 390 VSSDAM------T-RGMDVEGVNNVVNY 410 (515)
Q Consensus 390 v~T~~~------~-~GiDi~~v~~VI~~ 410 (515)
|+|.-- . ..+++.++.++|.-
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred EECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 999632 1 34677788888853
No 277
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=72.33 E-value=2.6 Score=34.78 Aligned_cols=18 Identities=28% Similarity=0.556 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
+..+++.+|+|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999853
No 278
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=71.98 E-value=2.5 Score=36.11 Aligned_cols=19 Identities=21% Similarity=0.281 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|.-+++.+|+|||||...
T Consensus 5 ~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCEEEEECSTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778899999999999853
No 279
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=71.77 E-value=1.5 Score=39.47 Aligned_cols=19 Identities=32% Similarity=0.544 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 5679999999999998644
No 280
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=71.65 E-value=5 Score=34.04 Aligned_cols=35 Identities=17% Similarity=0.118 Sum_probs=28.6
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil 107 (515)
...+++..++|.|||.+++-.++..+..+ .+|+|+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G----~rV~~v 62 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHG----KNVGVV 62 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTT----CCEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEE
Confidence 45799999999999999888888777654 378887
No 281
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=71.36 E-value=4.5 Score=35.65 Aligned_cols=25 Identities=28% Similarity=0.103 Sum_probs=19.3
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHH
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
+..|.-+.+.+|+|+|||......+
T Consensus 27 i~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 27 FPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 3467889999999999998654433
No 282
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=71.33 E-value=2.3 Score=40.25 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=16.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 117 ~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp CSEEEEESSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999998654
No 283
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=71.33 E-value=2.2 Score=39.58 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
+.+++.+|||+|||..+.
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468899999999998644
No 284
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=71.04 E-value=1.1 Score=41.99 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=23.8
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..++||||||.+.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 445666666543 223345666 667999999999973
No 285
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=71.02 E-value=9.7 Score=37.82 Aligned_cols=78 Identities=15% Similarity=0.090 Sum_probs=50.4
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCChH
Q 010196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATPGR 182 (515)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp~~ 182 (515)
..++++....-+..+.+.+.+. +.++..++|+.+..+...-+. .......+|+|+|+..
T Consensus 349 ~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~-----------------~f~~g~~~vLv~T~~~ 407 (510)
T 2oca_A 349 NAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKT-----------------LAENGKGIIIVASYGV 407 (510)
T ss_dssp EEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHH-----------------HHHHCCSCEEEEEHHH
T ss_pred CeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHH-----------------HHhCCCCCEEEEEcCh
Confidence 4555555566666666666654 457889999887655432111 1223457899999666
Q ss_pred HHHHHhcCcCCCCCcceEEEEcchh
Q 010196 183 LMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 183 l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
+. .++++.++++||+....
T Consensus 408 ~~------~GiDip~v~~vi~~~~~ 426 (510)
T 2oca_A 408 FS------TGISVKNLHHVVLAHGV 426 (510)
T ss_dssp HH------HSCCCCSEEEEEESSCC
T ss_pred hh------cccccccCcEEEEeCCC
Confidence 53 34678889999988776
No 286
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=70.99 E-value=1.4 Score=41.37 Aligned_cols=36 Identities=28% Similarity=0.186 Sum_probs=24.0
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..++||||||.+.
T Consensus 60 ~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 60 EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 445666665542 233345766 667899999999873
No 287
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=70.84 E-value=4.6 Score=37.43 Aligned_cols=34 Identities=21% Similarity=0.082 Sum_probs=22.5
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHH
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQ 92 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~ 92 (515)
+..++. .+..|.-+++.+++|+|||..++-.+.+
T Consensus 87 LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 87 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344442 2334566899999999999876554444
No 288
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.81 E-value=2.6 Score=35.96 Aligned_cols=19 Identities=32% Similarity=0.417 Sum_probs=16.0
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|.-+.+.+|+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999999853
No 289
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=70.53 E-value=1.8 Score=41.15 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=25.4
Q ss_pred cchhhHHHHHHHh----CCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQETI----GPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~~----~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+.... ..++.|.| ++..++||||||.+.
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 5567877776433 33456766 667999999999873
No 290
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=70.37 E-value=1.7 Score=44.57 Aligned_cols=33 Identities=15% Similarity=0.115 Sum_probs=22.2
Q ss_pred hHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
|..++..+...+..+..+++.+|+|+|||..+-
T Consensus 46 ~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHH
T ss_pred chhhHhhccccccCCCEEEEEeCCCCCHHHHHH
Confidence 333433333333457899999999999998643
No 291
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=70.30 E-value=2.4 Score=39.59 Aligned_cols=18 Identities=39% Similarity=0.285 Sum_probs=14.8
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.-++|.+|||||||..+.
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 357899999999998644
No 292
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.20 E-value=3.8 Score=38.50 Aligned_cols=18 Identities=28% Similarity=0.505 Sum_probs=14.9
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.++++.||+|+|||..+-
T Consensus 37 ~~~ll~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCM 54 (354)
T ss_dssp CCEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 349999999999998643
No 293
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=70.19 E-value=2.9 Score=35.12 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=14.1
Q ss_pred CCEEEECCCCchhHHHh
Q 010196 70 RDLCINSPTGSGKTLSY 86 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~ 86 (515)
+-+.+.+|+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999853
No 294
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.02 E-value=2.2 Score=40.59 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.7
Q ss_pred CCCCCEEEECCCCchhHHHh
Q 010196 67 LFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~ 86 (515)
..|..+++.+|||||||...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35677999999999999853
No 295
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=69.81 E-value=8.3 Score=42.34 Aligned_cols=77 Identities=9% Similarity=0.261 Sum_probs=57.6
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcCC-Cce----eEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-ccccCC-CCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFGE-LRI----KIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-MTRGMD-VEG 403 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~----~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~~~GiD-i~~ 403 (515)
.+.++||.++++..+..+++.++..+. .++ .+..++|+.+...+....+.+.+ .+|+|+|+- +..-+. +.+
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~ 175 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGH 175 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCC
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhcc
Confidence 467899999999999999998876542 245 78999999999888777877777 899999962 111111 456
Q ss_pred CCEEEE
Q 010196 404 VNNVVN 409 (515)
Q Consensus 404 v~~VI~ 409 (515)
+++||.
T Consensus 176 l~~lVi 181 (1054)
T 1gku_B 176 FDFIFV 181 (1054)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 777775
No 296
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=69.59 E-value=2.3 Score=40.18 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=18.4
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhh
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
+..+++.+|||||||... -.++..+.
T Consensus 123 ~g~i~I~GptGSGKTTlL-~~l~g~~~ 148 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTL-AAMLDYLN 148 (356)
T ss_dssp SEEEEEECSTTSCHHHHH-HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHH-HHHHhccc
Confidence 557899999999999753 33444443
No 297
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=69.43 E-value=4.6 Score=36.97 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=17.6
Q ss_pred CCCCEEEECCCCchhHHHhHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPI 90 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~ 90 (515)
.++.+++.+|+|+|||......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35668899999999998755433
No 298
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=69.34 E-value=3.2 Score=36.90 Aligned_cols=18 Identities=28% Similarity=0.427 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
.+.+++.+|+|+|||..+
T Consensus 49 ~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345999999999999854
No 299
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=69.29 E-value=2 Score=42.35 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.3
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
...++++.+|+|+|||..+-.
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 457899999999999986543
No 300
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=68.87 E-value=5 Score=37.63 Aligned_cols=52 Identities=12% Similarity=-0.105 Sum_probs=30.5
Q ss_pred HHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcc--cCcccEEEEccc
Q 010196 59 WQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRA--VRCLRALVVLPT 110 (515)
Q Consensus 59 ~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~~lil~Pt 110 (515)
+..++. .+..|.-+++.+|+|+|||..++..+........ ..+.+++|+.-.
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 444443 3345566899999999999865544443222110 023467777644
No 301
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=68.50 E-value=2.4 Score=39.24 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
...+++.+|+|+|||..+.
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4789999999999998643
No 302
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=68.41 E-value=3.5 Score=35.76 Aligned_cols=19 Identities=32% Similarity=0.270 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|+-+.+.+|+|+|||..
T Consensus 21 ~~G~~~~lvGpsGsGKSTL 39 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTL 39 (218)
T ss_dssp -CCCCEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999974
No 303
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=68.08 E-value=4.4 Score=34.84 Aligned_cols=32 Identities=22% Similarity=-0.019 Sum_probs=22.8
Q ss_pred chhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 52 FPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 52 ~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
+..|..++..+ ..|.-+.+.+|.|+|||...-
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~ 40 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAM 40 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHH
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHH
Confidence 33455565554 347889999999999998533
No 304
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=68.04 E-value=1.8 Score=40.73 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=24.0
Q ss_pred cchhhHHHHHH----HhCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQE----TIGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~----~~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+.. ++..++.|.| ++..++||||||.+.
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEe
Confidence 44556666553 2334456766 667999999999873
No 305
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=68.03 E-value=2.3 Score=35.27 Aligned_cols=16 Identities=25% Similarity=0.102 Sum_probs=13.8
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
-+++.+++|||||..+
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999854
No 306
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=68.02 E-value=2.5 Score=40.43 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.5
Q ss_pred CEEEECCCCchhHHHhHH
Q 010196 71 DLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~ 88 (515)
-++|.+|||+|||..+..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 467899999999986443
No 307
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=67.96 E-value=2.7 Score=39.43 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=23.0
Q ss_pred chhhHHHHHH---HhCCCCCCCC--EEEECCCCchhHHHh
Q 010196 52 FPVQVAVWQE---TIGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 52 ~~~Q~~a~~~---~~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
..-|.+.+.. ++..++.|.| ++..++||||||.+.
T Consensus 63 ~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 63 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp TCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 3445554433 3444556766 667999999999974
No 308
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=67.67 E-value=3.3 Score=35.26 Aligned_cols=20 Identities=30% Similarity=0.318 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.+|.|||||..+-
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~ 47 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAH 47 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36779999999999998543
No 309
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.47 E-value=3.2 Score=34.81 Aligned_cols=19 Identities=21% Similarity=0.324 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||...-
T Consensus 3 ~~~I~i~G~~GsGKsT~~~ 21 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQ 21 (192)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5578999999999998543
No 310
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=67.43 E-value=3.1 Score=34.15 Aligned_cols=17 Identities=18% Similarity=0.098 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.++.|||||...-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 311
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=67.41 E-value=2.2 Score=35.43 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.|.-+.+.+|+|||||..+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 46678899999999998543
No 312
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=67.31 E-value=1.5 Score=40.71 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=23.7
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..++||||||.+.
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 95 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTM 95 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEe
Confidence 445566665443 233345766 677999999999973
No 313
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=66.95 E-value=3 Score=40.84 Aligned_cols=19 Identities=26% Similarity=0.428 Sum_probs=16.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 167 ~~~vLL~GppGtGKT~lA~ 185 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAK 185 (444)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4789999999999998644
No 314
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=66.64 E-value=22 Score=37.52 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=53.8
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhcc-------ccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAP-------AVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAV 173 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~-------~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 173 (515)
...+||.+|++.-+..+++.+.+.+. ..++.+..++|+.+..++..-+...+.. ..-....
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~------------~~~~g~~ 370 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPES------------HNGRPGR 370 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCC------------SSSSCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccc------------cCCCCce
Confidence 45899999999999999998886322 2368899999998876663222111000 0002346
Q ss_pred cEEEeCChHHHHHHhcCcCCCCCcceEEEE
Q 010196 174 DILVATPGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 174 ~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
.|+|+|. .+. .++++.++++||-
T Consensus 371 kVlVAT~-----iae--~GidIp~v~~VId 393 (773)
T 2xau_A 371 KVVISTN-----IAE--TSLTIDGIVYVVD 393 (773)
T ss_dssp EEEEECT-----HHH--HTCCCTTEEEEEE
T ss_pred EEEEeCc-----HHH--hCcCcCCeEEEEe
Confidence 8999993 222 3466778877763
No 315
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.50 E-value=4 Score=36.91 Aligned_cols=18 Identities=33% Similarity=0.530 Sum_probs=15.0
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
.+.+++.+|+|+|||..+
T Consensus 44 ~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 455999999999999853
No 316
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=66.43 E-value=3.1 Score=36.18 Aligned_cols=30 Identities=20% Similarity=0.027 Sum_probs=20.6
Q ss_pred HHHHh-CCCCCCCCEEEECCCCchhHHHhHH
Q 010196 59 WQETI-GPGLFERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 59 ~~~~~-~~~~~~~~~ii~a~TGsGKT~~~~~ 88 (515)
+..++ ..+..|.-+.+.+|+|+|||.....
T Consensus 14 LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~ 44 (231)
T 4a74_A 14 LDKLLGGGIETQAITEVFGEFGSGKTQLAHT 44 (231)
T ss_dssp HHHHTTSSEESSEEEEEEESTTSSHHHHHHH
T ss_pred HHhHhcCCCCCCcEEEEECCCCCCHHHHHHH
Confidence 33344 2334567789999999999985443
No 317
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=66.37 E-value=2.7 Score=39.48 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=23.1
Q ss_pred cchhhHHHHHH---HhCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQE---TIGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~---~~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+.. ++..++.|.| ++..++||||||.+.
T Consensus 63 ~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 63 PSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp TTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 33445544432 3344456777 566899999999984
No 318
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=65.96 E-value=13 Score=31.03 Aligned_cols=59 Identities=5% Similarity=-0.078 Sum_probs=39.5
Q ss_pred hhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHH
Q 010196 53 PVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQ 116 (515)
Q Consensus 53 ~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q 116 (515)
+-|..++..++. ...+-.++.++-|++|+...+.-++.... ..+.++.+|+|+..-...
T Consensus 37 ~~~~~a~~~l~~--s~~~~~iv~g~ggs~~~~~~~a~L~~~a~---~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 37 AGYSDAVSVLAQ--DRPSLAIVSGQGGAAGQRERVAELVMMAR---EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHHHHH--HSCCEECCBCSSCSHHHHHHHHHHHHHHH---HTTCCEEEECSTTHHHHH
T ss_pred ccchhHHHHHhc--cCCceEEEecccchHHHHHHHHHHHHHHH---hcCeEEEEEcCchHHHHH
Confidence 457777776643 12455778999999999985444333222 356689999999765443
No 319
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=65.96 E-value=1.5 Score=41.31 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=22.6
Q ss_pred hhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 54 VQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 54 ~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
-|.+++..+ +..++.|.| ++..+.||||||++.
T Consensus 84 sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 84 SQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEe
Confidence 477666543 233455766 667999999999873
No 320
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=65.87 E-value=2 Score=40.42 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=24.7
Q ss_pred cchhhHHHHHH----HhCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQE----TIGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~----~~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+.. ++..++.|.| ++..++||||||.+.
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 44567766643 3344456766 667899999999973
No 321
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=65.71 E-value=5.4 Score=35.45 Aligned_cols=19 Identities=21% Similarity=0.302 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 32 ~~~i~l~G~~GsGKSTla~ 50 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHR 50 (253)
T ss_dssp CEEEEEESCGGGTTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 322
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=65.37 E-value=2.7 Score=35.37 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.-+++.+++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~~~ 23 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQ 23 (193)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5568899999999998643
No 323
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=65.36 E-value=3.4 Score=34.16 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.++.|||||..+-
T Consensus 8 g~~i~l~G~~GsGKSTl~~ 26 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVAS 26 (175)
T ss_dssp SEEEEEECSTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 5678899999999998543
No 324
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=65.35 E-value=2.7 Score=35.14 Aligned_cols=19 Identities=21% Similarity=0.377 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
|..+++.+++|||||..+-
T Consensus 4 g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp EEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5678999999999998644
No 325
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=65.12 E-value=1.7 Score=41.12 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=23.6
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+++..+ +..++.|.| ++..++||||||.+.
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeE
Confidence 445666665442 233345766 667899999999873
No 326
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=65.12 E-value=4.4 Score=36.61 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 73 ~~gvll~Gp~GtGKTtl~~ 91 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLAR 91 (278)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcChHHHHHH
Confidence 3459999999999998543
No 327
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=64.89 E-value=4.3 Score=39.44 Aligned_cols=20 Identities=30% Similarity=0.404 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+++++.+|+|+|||..+-
T Consensus 49 ~~~~iLl~GppGtGKT~lar 68 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIAR 68 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHH
Confidence 35789999999999998643
No 328
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.87 E-value=4.8 Score=34.48 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.0
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.|.+|+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456688999999999974
No 329
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=64.80 E-value=2.4 Score=39.73 Aligned_cols=19 Identities=16% Similarity=0.242 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
..++++.||+|+|||..+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4579999999999998643
No 330
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=64.62 E-value=4.3 Score=40.21 Aligned_cols=20 Identities=35% Similarity=0.519 Sum_probs=16.9
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
....+++.+|+|+|||..+-
T Consensus 237 ~~~~vLL~GppGtGKT~lAr 256 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIAR 256 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHH
T ss_pred CCCcEEEECcCCCCHHHHHH
Confidence 45789999999999998644
No 331
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=64.60 E-value=1.8 Score=40.85 Aligned_cols=36 Identities=25% Similarity=0.213 Sum_probs=24.1
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+++..+ +..++.|.| ++..++||||||.+.
T Consensus 61 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 61 PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEE
Confidence 455676665543 223345766 667999999999973
No 332
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=64.49 E-value=3.9 Score=38.18 Aligned_cols=18 Identities=28% Similarity=0.397 Sum_probs=15.5
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+++.+|+|+|||..+-
T Consensus 52 ~~~ll~Gp~G~GKTTLa~ 69 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAH 69 (334)
T ss_dssp CCEEEESSTTSSHHHHHH
T ss_pred CeEEEECCCCCcHHHHHH
Confidence 679999999999998543
No 333
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=64.44 E-value=9.4 Score=34.39 Aligned_cols=26 Identities=19% Similarity=0.120 Sum_probs=19.9
Q ss_pred CCCCCCEEEECCCCchhHHHhHHHHH
Q 010196 66 GLFERDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
+..|.-+++.+|+|+|||..+...+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 34578899999999999986554433
No 334
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=64.09 E-value=4.8 Score=34.17 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.++.|||||...-
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~ 22 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCM 22 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 46678999999999998643
No 335
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=64.04 E-value=5.5 Score=36.56 Aligned_cols=29 Identities=14% Similarity=0.086 Sum_probs=21.7
Q ss_pred HHHHHHhCCCCCCCCEEEECCCCchhHHH
Q 010196 57 AVWQETIGPGLFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 57 ~a~~~~~~~~~~~~~~ii~a~TGsGKT~~ 85 (515)
.++..+--.+..|+-+.|.+|+|+|||..
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHH
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHH
Confidence 45544444556788899999999999974
No 336
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=64.04 E-value=4.3 Score=34.73 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|+-+.+.+|+|+|||...
T Consensus 19 ~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778899999999999753
No 337
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=63.80 E-value=1.8 Score=40.73 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=24.1
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..++||||||.+.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 455677666542 233345766 667999999999873
No 338
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=63.78 E-value=4 Score=34.14 Aligned_cols=43 Identities=12% Similarity=0.158 Sum_probs=23.0
Q ss_pred EEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHH
Q 010196 72 LCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFA 122 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~ 122 (515)
++|.+++|||||.-+.- .... +..++|+......-..+.+.+.
T Consensus 2 ilV~Gg~~SGKS~~A~~----la~~----~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA----LIGD----APQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHH----HHCS----CSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHH----HHhc----CCCeEEEecCCCCCHHHHHHHH
Confidence 58899999999974332 1211 2357888775443333333333
No 339
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=63.73 E-value=1.9 Score=40.69 Aligned_cols=36 Identities=19% Similarity=0.357 Sum_probs=23.5
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..++||||||++.
T Consensus 65 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 65 ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEE
Confidence 445566665443 223345766 667999999999873
No 340
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=63.59 E-value=3.8 Score=35.73 Aligned_cols=19 Identities=26% Similarity=0.186 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999998643
No 341
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=63.32 E-value=4.2 Score=33.30 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=15.6
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
+++++.++.|||||.++-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 589999999999998654
No 342
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=63.31 E-value=3.8 Score=35.06 Aligned_cols=21 Identities=33% Similarity=0.164 Sum_probs=16.3
Q ss_pred CCCCCCEEEECCCCchhHHHh
Q 010196 66 GLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 66 ~~~~~~~ii~a~TGsGKT~~~ 86 (515)
+..+.-+.+.+++|||||..+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 334566889999999999753
No 343
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=63.29 E-value=2.2 Score=40.44 Aligned_cols=34 Identities=18% Similarity=0.324 Sum_probs=22.5
Q ss_pred hhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
.-|.+++..+ +..++.|.| ++..++||||||.+.
T Consensus 68 asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm 107 (366)
T 2zfi_A 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTM 107 (366)
T ss_dssp CCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEe
Confidence 4566665443 233345766 667999999999873
No 344
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=63.25 E-value=3.8 Score=34.83 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.|.-+++.+|+|+|||..+-
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~ 43 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLAC 43 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46778899999999998643
No 345
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=63.01 E-value=33 Score=25.19 Aligned_cols=112 Identities=20% Similarity=0.256 Sum_probs=63.9
Q ss_pred EEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCcc--cc-----CCCCCCCEE
Q 010196 335 CIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAMT--RG-----MDVEGVNNV 407 (515)
Q Consensus 335 ~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~~--~G-----iDi~~v~~V 407 (515)
.+||.+.-.-...+.+.++..| ..+..+.++...+.|.+-++.|.....++-...+--. +. --.|.+++|
T Consensus 5 fvvfssdpeilkeivreikrqg---vrvvllysdqdekrrrerleefekqgvdvrtvedkedfrenireiwerypqldvv 81 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQG---VRVVLLYSDQDEKRRRERLEEFEKQGVDVRTVEDKEDFRENIREIWERYPQLDVV 81 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTT---CEEEEEECCSCHHHHHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHCTTCCEE
T ss_pred EEEecCCHHHHHHHHHHHHhCC---eEEEEEecCchHHHHHHHHHHHHHcCCceeeeccHHHHHHHHHHHHHhCCCCcEE
Confidence 4667777777777777777766 8899999999998899999999866555433222110 00 014666666
Q ss_pred EEccCCCC--hhhhHHhhhhcccCCCCccEEEEeechhHHHHHHHHHHh
Q 010196 408 VNYDKPAY--IKTYIHRAGRTARAGQLGRCFTLLHKDEVKRFKKLLQKA 454 (515)
Q Consensus 408 I~~~~p~s--~~~~~Qr~GR~gR~g~~g~~~~~~~~~d~~~~~~~~~~~ 454 (515)
++...... ..+|+..+-- .| -.+++.++..|-+.-+.--+..
T Consensus 82 vivttddkewikdfieeake---rg--vevfvvynnkdddrrkeaqqef 125 (162)
T 2l82_A 82 VIVTTDDKEWIKDFIEEAKE---RG--VEVFVVYNNKDDDRRKEAQQEF 125 (162)
T ss_dssp EEEECCCHHHHHHHHHHHHH---TT--CEEEEEEECSCHHHHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHh---cC--cEEEEEecCCCchhHHHHHHHh
Confidence 65543211 2344433211 11 3456666655544444333333
No 346
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=62.68 E-value=4.9 Score=34.82 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 347
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=62.67 E-value=2.3 Score=40.10 Aligned_cols=34 Identities=21% Similarity=0.230 Sum_probs=22.6
Q ss_pred hhhHHHHHH----HhCCCCCCCC--EEEECCCCchhHHHh
Q 010196 53 PVQVAVWQE----TIGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 53 ~~Q~~a~~~----~~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
.-|.+.+.. ++..++.|.| ++..++||||||.+.
T Consensus 71 a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 71 AGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred ccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 457665543 2333445766 567899999999973
No 348
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=62.51 E-value=14 Score=35.85 Aligned_cols=69 Identities=19% Similarity=0.079 Sum_probs=45.9
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccCCcEEEeCC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSAVDILVATP 180 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Ivv~Tp 180 (515)
+.++||++|+++-++.+++.++.. +.++..++|..- .... ........+|+|+|.
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~~R-~~~~--------------------~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRKTF-EREY--------------------PTIKQKKPDFILATD 231 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSSSC-C----------------------------CCCSEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecchhH-HHHH--------------------hhhcCCCceEEEECC
Confidence 347999999999999999998876 678888888321 1111 111234579999993
Q ss_pred hHHHHHHhcCcCCCCCcceEEE
Q 010196 181 GRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (515)
.+. .++++. +++||
T Consensus 232 -----v~e--~GiDip-v~~VI 245 (440)
T 1yks_A 232 -----IAE--MGANLC-VERVL 245 (440)
T ss_dssp -----STT--CCTTCC-CSEEE
T ss_pred -----hhh--eeeccC-ceEEE
Confidence 222 456777 88877
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=62.44 E-value=5.2 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+++.+++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 350
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=62.42 E-value=11 Score=36.05 Aligned_cols=76 Identities=14% Similarity=0.269 Sum_probs=47.0
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc-cCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ-SAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~Ivv~T 179 (515)
..++||.++++.-++.+++.+... ++.+..++|+.+..++...+ ..++ ...+|+|+|
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~------------------~~f~~g~~~vlv~T 337 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIM------------------REFRSGSSRVLITT 337 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHH------------------HHHSCC---CEEEC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHH------------------HHHHcCCCcEEEEC
Confidence 347999999999999888888765 67788899988766553322 2222 346899999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcc
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDE 205 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDE 205 (515)
. .+ ..++++.++++||.-.
T Consensus 338 ~-----~~--~~Gidip~v~~Vi~~~ 356 (414)
T 3eiq_A 338 D-----LL--ARGIDVQQVSLVINYD 356 (414)
T ss_dssp S-----SC--C--CCGGGCSCEEESS
T ss_pred C-----cc--ccCCCccCCCEEEEeC
Confidence 3 12 2346777788877533
No 351
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=62.35 E-value=3.4 Score=34.69 Aligned_cols=19 Identities=26% Similarity=0.494 Sum_probs=14.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
|.-+++.+|+|+|||..+-
T Consensus 2 g~ii~l~G~~GaGKSTl~~ 20 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCK 20 (189)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3457889999999998543
No 352
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=62.20 E-value=2 Score=40.71 Aligned_cols=36 Identities=25% Similarity=0.205 Sum_probs=23.3
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..+.||||||++.
T Consensus 77 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 77 PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceec
Confidence 444566665542 223345666 667999999999873
No 353
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=62.04 E-value=7.9 Score=44.34 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=33.8
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEccc
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPT 110 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt 110 (515)
.+..++. .+..+..+++.+|+|+|||..++..+.+.+.. +.+++|+.-.
T Consensus 21 ~LD~lL~~GGi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~----G~~vlYI~te 71 (1706)
T 3cmw_A 21 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE 71 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT----TCCEEEECTT
T ss_pred HHHHHhhcCCcCCCeEEEEECCCCCCHHHHHHHHHHHHhhC----CCceEEEEec
Confidence 4444443 34567899999999999999776666655544 3367777543
No 354
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=61.98 E-value=5 Score=33.14 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
+.+++.+++|||||..+-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999998644
No 355
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=61.97 E-value=5.9 Score=34.30 Aligned_cols=21 Identities=19% Similarity=0.181 Sum_probs=16.1
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
..+-+++.+|+||||+..+-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345678899999999886543
No 356
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=61.93 E-value=4.9 Score=34.87 Aligned_cols=19 Identities=21% Similarity=0.337 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+++.+|+|+|||..
T Consensus 14 ~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp -CCCEEEEECCTTSCHHHH
T ss_pred CCCcEEEEECCCCCCHHHH
Confidence 4578899999999999984
No 357
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=61.92 E-value=4.5 Score=34.39 Aligned_cols=19 Identities=21% Similarity=0.279 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
..-+++.|+.|||||..+-
T Consensus 18 ~~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SSCEEEECSTTSCHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4579999999999998643
No 358
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=61.79 E-value=4 Score=34.30 Aligned_cols=19 Identities=21% Similarity=0.205 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999998643
No 359
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.77 E-value=1.8 Score=45.68 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
++++.+|||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999998654
No 360
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=61.69 E-value=3.4 Score=39.20 Aligned_cols=36 Identities=28% Similarity=0.247 Sum_probs=24.4
Q ss_pred cchhhHHHHHH---HhCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQE---TIGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~---~~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+.. ++..++.|.| ++..++||||||.+.
T Consensus 93 ~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 93 PGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp TTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHH
T ss_pred CcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEe
Confidence 45566666544 3344556766 667899999999873
No 361
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=61.47 E-value=46 Score=29.71 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=40.9
Q ss_pred CCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHH
Q 010196 77 PTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEI 145 (515)
Q Consensus 77 ~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 145 (515)
...+||-.. +.-++..+.. .+.++||.+.+...++.+.+.+... .++.+..++|+.+..+..
T Consensus 92 ~~~s~K~~~-L~~ll~~~~~---~~~kvlIFs~~~~~~~~l~~~L~~~---~g~~~~~l~G~~~~~~R~ 153 (271)
T 1z5z_A 92 VRRSGKMIR-TMEIIEEALD---EGDKIAIFTQFVDMGKIIRNIIEKE---LNTEVPFLYGELSKKERD 153 (271)
T ss_dssp STTCHHHHH-HHHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHH---HCSCCCEECTTSCHHHHH
T ss_pred cccCHHHHH-HHHHHHHHHh---CCCeEEEEeccHHHHHHHHHHHHHh---cCCcEEEEECCCCHHHHH
Confidence 345777764 3334433322 3448999999999888888777653 156777889988765553
No 362
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=61.40 E-value=3.4 Score=43.62 Aligned_cols=21 Identities=19% Similarity=0.121 Sum_probs=17.5
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
...++++.+|+|+|||..+-.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~ 220 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEG 220 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHH
Confidence 457899999999999986543
No 363
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=61.38 E-value=3.6 Score=36.00 Aligned_cols=19 Identities=37% Similarity=0.475 Sum_probs=11.9
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.|.-+.+.+|+|+|||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677889999999999753
No 364
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=61.37 E-value=2.1 Score=40.36 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=22.3
Q ss_pred hhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
.-|.+.+..+ +..++.|.| ++..++||||||.+.
T Consensus 82 ~sQ~~Vy~~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 82 ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCceEe
Confidence 3566655443 233345766 566899999999873
No 365
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=61.33 E-value=7.9 Score=40.27 Aligned_cols=78 Identities=14% Similarity=0.284 Sum_probs=49.4
Q ss_pred cccEEEEcccHHHHHHHHHHHHHh--ccccCcEEEEeecC--------CchHHHHHHHhccCcccccccCCchhHHHhhc
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAI--APAVGLSVGLAVGQ--------SSIADEISELIKRPKLEAGICYDPEDVLQELQ 170 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~--~~~~~~~v~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 170 (515)
+.++||.++++..++.+.+.+... +...++++..++|+ .+..++...+ ..++
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~------------------~~F~ 461 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI------------------SKFR 461 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHH------------------HHHC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHH------------------HHHh
Confidence 458999999999999999998865 23336888899998 6555543222 2233
Q ss_pred -cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEE
Q 010196 171 -SAVDILVATPGRLMDHINATRGFTLEHLCYLVV 203 (515)
Q Consensus 171 -~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vVi 203 (515)
+..+|+|+|. .+ ..++++.++++||.
T Consensus 462 ~g~~~VLVaT~-----~~--~~GIDip~v~~VI~ 488 (699)
T 4gl2_A 462 TGKINLLIATT-----VA--EEGLDIKECNIVIR 488 (699)
T ss_dssp C---CCSEEEC-----SC--CTTSCCCSCCCCEE
T ss_pred cCCCcEEEEcc-----cc--ccCCccccCCEEEE
Confidence 3478999993 22 24577778887773
No 366
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=61.26 E-value=51 Score=32.54 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=22.8
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLP 109 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~P 109 (515)
..+++.+++|+|||..+...+. .+.. .+.+++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~-~l~~---~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAY-YYQR---KGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHH---TTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHh---CCCeEEEEec
Confidence 3578899999999987554333 3332 1335666653
No 367
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=61.06 E-value=5.6 Score=35.33 Aligned_cols=19 Identities=32% Similarity=0.336 Sum_probs=16.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|+|||...-
T Consensus 48 g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp TCCEEEECSTTSCHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 8899999999999998643
No 368
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=61.04 E-value=3.1 Score=37.96 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.-+++.||+|||||..+-
T Consensus 33 ~~livl~G~sGsGKSTla~ 51 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRS 51 (287)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998543
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=60.95 E-value=4.7 Score=33.93 Aligned_cols=20 Identities=20% Similarity=0.182 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.+++|||||..+-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35678999999999998643
No 370
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=60.80 E-value=5.3 Score=34.52 Aligned_cols=19 Identities=21% Similarity=0.384 Sum_probs=15.9
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5678999999999998644
No 371
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=60.57 E-value=2 Score=40.39 Aligned_cols=36 Identities=22% Similarity=0.241 Sum_probs=23.1
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..++||||||.+.
T Consensus 54 ~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 54 GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 344566665443 223345766 667999999999873
No 372
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=60.47 E-value=2.9 Score=40.67 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=23.4
Q ss_pred hhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 53 PVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 53 ~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
.-|.+++..+ +..++.|.| ++..+.||||||++.
T Consensus 115 asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 115 ATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred CCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 4577766543 333345766 667999999999874
No 373
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=60.14 E-value=8.3 Score=35.71 Aligned_cols=34 Identities=21% Similarity=0.192 Sum_probs=21.2
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil 107 (515)
+-+.+.+++|+|||......+. .+.. .+.+++++
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~-~l~~---~g~kVlli 139 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMAN-YYAE---LGYKVLIA 139 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH-HHHH---TTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH---CCCeEEEE
Confidence 4477899999999987554333 2222 23356665
No 374
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=60.14 E-value=5.7 Score=39.09 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 49 p~gvLL~GppGtGKT~Lar 67 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLAR 67 (476)
T ss_dssp CSEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4679999999999998643
No 375
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.07 E-value=5.5 Score=34.33 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=48.3
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCC-----ceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC-----Cccc-cCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGEL-----RIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD-----AMTR-GMD 400 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~-----~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~-----~~~~-GiD 400 (515)
+.++||.++++..+..+++.+...... +..+..++|+.+..... +.+ ....+|+|+|. .+.. .++
T Consensus 72 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---~~~-~~~~~Iiv~Tp~~l~~~l~~~~~~ 147 (219)
T 1q0u_A 72 EVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKAL---EKL-NVQPHIVIGTPGRINDFIREQALD 147 (219)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTT---CCC-SSCCSEEEECHHHHHHHHHTTCCC
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHH---HHc-CCCCCEEEeCHHHHHHHHHcCCCC
Confidence 468999999999999998887665321 46777888887543221 111 23578999995 2222 345
Q ss_pred CCCCCEEEE
Q 010196 401 VEGVNNVVN 409 (515)
Q Consensus 401 i~~v~~VI~ 409 (515)
+..+++||.
T Consensus 148 ~~~~~~lVi 156 (219)
T 1q0u_A 148 VHTAHILVV 156 (219)
T ss_dssp GGGCCEEEE
T ss_pred cCcceEEEE
Confidence 666777664
No 376
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=60.06 E-value=8.5 Score=37.34 Aligned_cols=35 Identities=20% Similarity=0.149 Sum_probs=23.0
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
..+++.+++|+|||..+...+...... +.+++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~----G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKR----GLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHH----HCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 468899999999998765544333322 23566664
No 377
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.84 E-value=4.7 Score=40.28 Aligned_cols=19 Identities=32% Similarity=0.384 Sum_probs=16.1
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.||+|+|||..+.
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3679999999999998654
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=59.62 E-value=6.2 Score=33.86 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.3
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.+++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 379
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=59.45 E-value=8.7 Score=36.83 Aligned_cols=42 Identities=10% Similarity=-0.164 Sum_probs=25.2
Q ss_pred CCCCEEEECCCCchhHHHhHHHHHHHhhhc--ccCcccEEEEcc
Q 010196 68 FERDLCINSPTGSGKTLSYALPIVQTLSNR--AVRCLRALVVLP 109 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~--~~~~~~~lil~P 109 (515)
.|.-+.|.+|+|+|||..+...++..+... ...+.+++|+.-
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 456688999999999986553333333211 002345777753
No 380
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=59.45 E-value=7.3 Score=33.21 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=37.0
Q ss_pred CCeEEEEcCChhhHHH-HHHHHhhcCCCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecC
Q 010196 332 EEKCIVFTSSVESTHR-LCTLLNHFGELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSD 393 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~-l~~~L~~~~~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~ 393 (515)
..++||+|+++..+.. +.+.+..+...+..+..++|+.....+...+. ...+|+|+|.
T Consensus 82 ~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 82 PGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 6789999999998887 66666665444578888888765433221211 1357888874
No 381
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=59.42 E-value=6.9 Score=36.18 Aligned_cols=15 Identities=27% Similarity=0.213 Sum_probs=12.9
Q ss_pred CEEEECCCCchhHHH
Q 010196 71 DLCINSPTGSGKTLS 85 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~ 85 (515)
-+++.++.|+|||..
T Consensus 6 v~~i~G~~GaGKTTl 20 (318)
T 1nij_A 6 VTLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEEESSSSSCHHH
T ss_pred EEEEEecCCCCHHHH
Confidence 468899999999974
No 382
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=59.42 E-value=6.1 Score=33.52 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568999999999998643
No 383
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=59.23 E-value=7 Score=36.33 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.4
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 010196 68 FERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~--~ii~a~TGsGKT~~~ 86 (515)
.|.| ++..++||||||.+.
T Consensus 78 ~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 78 DGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp TTCCEEEEEESSTTSSHHHHH
T ss_pred CCCEEEEEeECCCCCCCcEEE
Confidence 4666 667999999999873
No 384
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=58.99 E-value=5.6 Score=33.18 Aligned_cols=16 Identities=31% Similarity=0.420 Sum_probs=13.5
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
.+.+.+|+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999853
No 385
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=58.92 E-value=9.2 Score=44.55 Aligned_cols=56 Identities=16% Similarity=0.044 Sum_probs=37.6
Q ss_pred HHHHHhC--CCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHH
Q 010196 58 VWQETIG--PGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVK 118 (515)
Q Consensus 58 a~~~~~~--~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~ 118 (515)
.+..++. .+..++++++.+|+|+|||..+...+.+.+.. +.+++|++-. ++.+++.
T Consensus 1068 ~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~----Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1068 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE----GKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT----TCCEEEECTT-SCCCHHH
T ss_pred HHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc----CCeEEEEEcc-ccHHHHH
Confidence 3455563 45578999999999999999876666655544 3467887543 4444444
No 386
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=58.86 E-value=2.2 Score=40.59 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=23.4
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+ +..++.|.| ++..+.||||||.+.
T Consensus 111 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 111 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 445566665432 223345655 667999999999984
No 387
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=58.80 E-value=6.3 Score=32.31 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
+.+++.+++|||||..+-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999998643
No 388
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=58.62 E-value=6.8 Score=33.57 Aligned_cols=18 Identities=28% Similarity=0.313 Sum_probs=14.5
Q ss_pred CEEEECCCCchhHHHhHH
Q 010196 71 DLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~ 88 (515)
.+++.+|+||||+..+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999986543
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=58.49 E-value=5.6 Score=34.18 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.3
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.+|.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 390
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=58.45 E-value=35 Score=32.48 Aligned_cols=32 Identities=22% Similarity=0.155 Sum_probs=23.7
Q ss_pred hHHHHHHHhCCCCCCCCEEEECCCCchhHHHhH
Q 010196 55 QVAVWQETIGPGLFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 55 Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~ 87 (515)
=.+++... -.+-.|+.+.+.+|+|+|||....
T Consensus 161 GiraID~~-~pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 161 TARVLDLA-SPIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp HHHHHHHH-SCCBTTCEEEEECCSSSSHHHHHH
T ss_pred cceeeeee-eeecCCcEEEEecCCCCChhHHHH
Confidence 34455543 345678999999999999998654
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=58.38 E-value=6.1 Score=34.53 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 16 ~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4679999999999998644
No 392
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=58.23 E-value=7.4 Score=37.32 Aligned_cols=20 Identities=35% Similarity=0.434 Sum_probs=15.9
Q ss_pred CCCCC--EEEECCCCchhHHHh
Q 010196 67 LFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 67 ~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+.|.| ++..++||||||++.
T Consensus 137 l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 137 LDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HTTCCEEEEEESCTTSSHHHHH
T ss_pred hCCcceEEEEECCCCCCCceEe
Confidence 45766 567899999999984
No 393
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=58.02 E-value=6.6 Score=31.57 Aligned_cols=15 Identities=33% Similarity=0.213 Sum_probs=13.1
Q ss_pred CEEEECCCCchhHHH
Q 010196 71 DLCINSPTGSGKTLS 85 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~ 85 (515)
-.+|.+|+|+|||..
T Consensus 25 ~~~I~G~NGsGKSti 39 (149)
T 1f2t_A 25 INLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 468899999999985
No 394
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.01 E-value=6.9 Score=33.01 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.2
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
|.-+.+.+|+|+|||...-
T Consensus 1 G~~i~i~G~nG~GKTTll~ 19 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIH 19 (189)
T ss_dssp CCCEEEESCCSSCHHHHHH
T ss_pred CCEEEEECCCCChHHHHHH
Confidence 3467899999999998543
No 395
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=57.86 E-value=18 Score=34.15 Aligned_cols=74 Identities=11% Similarity=0.214 Sum_probs=52.5
Q ss_pred CCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc------cccCCCCC
Q 010196 331 GEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TRGMDVEG 403 (515)
Q Consensus 331 ~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~------~~GiDi~~ 403 (515)
.+.++||.++++..+..+.+.+.... ..+..+..++|+.+..+....+. ..+|+|+|.-. ...+++.+
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~ 162 (394)
T 1fuu_A 88 KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDK 162 (394)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhh
Confidence 35689999999999999988887643 24578888999988765554443 35799998421 12345566
Q ss_pred CCEEEE
Q 010196 404 VNNVVN 409 (515)
Q Consensus 404 v~~VI~ 409 (515)
+++||.
T Consensus 163 ~~~vIi 168 (394)
T 1fuu_A 163 IKMFIL 168 (394)
T ss_dssp CCEEEE
T ss_pred CcEEEE
Confidence 777775
No 396
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=57.80 E-value=11 Score=34.62 Aligned_cols=36 Identities=17% Similarity=0.158 Sum_probs=22.1
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+.-+.+.+|+|+|||.... .+..+... .+.++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~--~Lagll~~--~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIA--KLGRYYQN--LGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHH--HHHHHHHT--TTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHh--cCCEEEEEe
Confidence 4567889999999998643 33333332 233555553
No 397
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=57.54 E-value=12 Score=30.74 Aligned_cols=24 Identities=21% Similarity=-0.022 Sum_probs=16.4
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhh
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLS 95 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~ 95 (515)
-+.+.++.|||||... .-++..+.
T Consensus 6 ~i~i~G~sGsGKTTl~-~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLM-EKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHH
T ss_pred EEEEECCCCCCHHHHH-HHHHHhhH
Confidence 4678999999999743 33444443
No 398
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=57.47 E-value=8.4 Score=36.56 Aligned_cols=22 Identities=27% Similarity=0.125 Sum_probs=17.8
Q ss_pred CCCCCCCEEEECCCCchhHHHh
Q 010196 65 PGLFERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 65 ~~~~~~~~ii~a~TGsGKT~~~ 86 (515)
.+..++.+++.+|+|+|||...
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3456778999999999999753
No 399
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=57.28 E-value=5.6 Score=33.21 Aligned_cols=20 Identities=25% Similarity=0.157 Sum_probs=16.3
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.+++|||||..+-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35678899999999998644
No 400
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=57.26 E-value=6.9 Score=37.49 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=23.2
Q ss_pred cchhhHHHHHHH----hCCCCCCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQET----IGPGLFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~----~~~~~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+++..+ +..++.|.| ++..+.||||||++.
T Consensus 131 ~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 131 ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 445566665432 223345655 667899999999974
No 401
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=57.18 E-value=5.7 Score=32.92 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=16.2
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.|..+++.++.|||||...-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 36678899999999998543
No 402
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=57.16 E-value=5.5 Score=33.33 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.++.|||||..+-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998543
No 403
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=57.16 E-value=5.9 Score=33.78 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.-+++.++.|||||..+-
T Consensus 4 ~~~I~i~G~~GsGKsT~~~ 22 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQAT 22 (213)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHH
Confidence 5568899999999998644
No 404
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.13 E-value=11 Score=34.51 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
|.-+.+.+|+|+|||....
T Consensus 100 g~vi~lvG~nGsGKTTll~ 118 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLG 118 (302)
T ss_dssp CEEEEEECCTTSCHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHH
Confidence 4557899999999998644
No 405
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=57.12 E-value=28 Score=33.84 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=45.8
Q ss_pred ccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeCC
Q 010196 102 LRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVATP 180 (515)
Q Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp 180 (515)
.++||.+|++.-++++++.+++. ++.+..++|+... .. ...+ ....+|+|+|.
T Consensus 189 ~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~-~~---------------------~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 189 GKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTFD-TE---------------------YPKTKLTDWDFVVTTD 242 (451)
T ss_dssp SCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTHH-HH---------------------GGGGGSSCCSEEEECG
T ss_pred CCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHHH-HH---------------------HHhhccCCceEEEECC
Confidence 37999999999999998888765 6778888876431 11 1122 34579999992
Q ss_pred hHHHHHHhcCcCCCCCcceEEE
Q 010196 181 GRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 181 ~~l~~~l~~~~~~~~~~~~~vV 202 (515)
.+. .++++.. ++||
T Consensus 243 -----v~~--~GiDip~-~~VI 256 (451)
T 2jlq_A 243 -----ISE--MGANFRA-GRVI 256 (451)
T ss_dssp -----GGG--SSCCCCC-SEEE
T ss_pred -----HHH--hCcCCCC-CEEE
Confidence 333 3466666 6666
No 406
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=56.83 E-value=4.9 Score=35.33 Aligned_cols=18 Identities=33% Similarity=0.392 Sum_probs=15.8
Q ss_pred CCCCCEEEECCCCchhHH
Q 010196 67 LFERDLCINSPTGSGKTL 84 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~ 84 (515)
..|.-+.+.+|+|+|||.
T Consensus 29 ~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp CTTCEEEEECSTTSSHHH
T ss_pred cCCCEEEEECCCCCcHHH
Confidence 357789999999999997
No 407
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=56.81 E-value=5.9 Score=39.84 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=17.2
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+..+++.+|+|+|||..+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999998543
No 408
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=56.76 E-value=5.8 Score=33.42 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.-+++.+++|||||..+-
T Consensus 12 ~~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp SCEEEEEECTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4578999999999998643
No 409
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=56.75 E-value=43 Score=34.79 Aligned_cols=79 Identities=20% Similarity=0.148 Sum_probs=51.5
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccc--------------------------------cCcEEEEeecCCchHHHHHHH
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPA--------------------------------VGLSVGLAVGQSSIADEISEL 148 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~--------------------------------~~~~v~~~~g~~~~~~~~~~~ 148 (515)
+..+||.+|++.-+..+++.+.+.... ....+...+|+.+..++..-
T Consensus 252 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v- 330 (715)
T 2va8_A 252 NGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI- 330 (715)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH-
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH-
Confidence 457999999999999999998875432 01236777887776554322
Q ss_pred hccCcccccccCCchhHHHhh-ccCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEc
Q 010196 149 IKRPKLEAGICYDPEDVLQEL-QSAVDILVATPGRLMDHINATRGFTLEHLCYLVVD 204 (515)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViD 204 (515)
...+ .+...|+|+|. .+. .++++..+++||-+
T Consensus 331 -----------------~~~f~~g~~~vlvaT~-----~l~--~Gidip~~~~VI~~ 363 (715)
T 2va8_A 331 -----------------EEGFRQRKIKVIVATP-----TLA--AGVNLPARTVIIGD 363 (715)
T ss_dssp -----------------HHHHHTTCSCEEEECG-----GGG--GSSCCCBSEEEECC
T ss_pred -----------------HHHHHcCCCeEEEECh-----HHh--cccCCCceEEEEeC
Confidence 1222 23579999992 222 34677788776643
No 410
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.69 E-value=16 Score=36.39 Aligned_cols=75 Identities=13% Similarity=0.262 Sum_probs=51.2
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----cccc-C-CCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~~G-i-Di~~ 403 (515)
+.++||.+|++..+....+.+.... ..+..+..++|+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 52 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 127 (555)
T 3tbk_A 52 KGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHII----EDNDIIILTPQILVNNLNNGAIPSLSV 127 (555)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHHTTTCCEEEECTTTGGGSCHHHHH----HHCSEEEECHHHHHHHHHTSSSCCGGG
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHhccCCcEEEEEcCCCcchhhHHHHh----cCCCEEEECHHHHHHHHhcCccccccc
Confidence 6789999999999988888887652 12478999999987654433222 13689999852 2222 3 5566
Q ss_pred CCEEEEc
Q 010196 404 VNNVVNY 410 (515)
Q Consensus 404 v~~VI~~ 410 (515)
+++||.-
T Consensus 128 ~~~vViD 134 (555)
T 3tbk_A 128 FTLMIFD 134 (555)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7877753
No 411
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=56.66 E-value=4.1 Score=33.87 Aligned_cols=19 Identities=37% Similarity=0.447 Sum_probs=11.8
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.++.|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4568899999999998644
No 412
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=56.65 E-value=5.8 Score=33.18 Aligned_cols=18 Identities=28% Similarity=0.292 Sum_probs=15.0
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+++.+++|||||..+-
T Consensus 7 ~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEEESTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468899999999998643
No 413
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=56.38 E-value=2.1 Score=45.25 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.9
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
++++.+|||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999998654
No 414
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=56.31 E-value=6.2 Score=33.68 Aligned_cols=20 Identities=15% Similarity=0.102 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.-+++.++.|||||...-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 46678999999999998644
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=56.30 E-value=6.3 Score=34.10 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+.+.+|+|||||..+-
T Consensus 5 ~~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp SCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468899999999998543
No 416
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=56.10 E-value=7.4 Score=37.39 Aligned_cols=20 Identities=35% Similarity=0.401 Sum_probs=15.6
Q ss_pred CCCCC--EEEECCCCchhHHHh
Q 010196 67 LFERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 67 ~~~~~--~ii~a~TGsGKT~~~ 86 (515)
+.|.| ++..++||||||.+.
T Consensus 135 l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 135 LDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HTTCCEEEEEESSTTSSHHHHH
T ss_pred HCCCceEEEEecCCCCCCeeEe
Confidence 34666 667899999999973
No 417
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=55.82 E-value=14 Score=32.99 Aligned_cols=61 Identities=8% Similarity=-0.079 Sum_probs=33.5
Q ss_pred HHHHhCC-CCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHh
Q 010196 59 WQETIGP-GLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAI 124 (515)
Q Consensus 59 ~~~~~~~-~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 124 (515)
+.+++.. +..|..+++.+.+|+|||...+--+.+.+.+ +-+++|++-. +-..++.+.++.+
T Consensus 10 LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~----Ge~~~~~~~~-e~~~~l~~~~~~~ 71 (260)
T 3bs4_A 10 LDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKS----DNLVGMFSIS-YPLQLIIRILSRF 71 (260)
T ss_dssp HHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHT----TCEEEEEECS-SCHHHHHHHHHHT
T ss_pred HHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHC----CCcEEEEEEe-CCHHHHHHHHHHc
Confidence 3444543 3456778888677777774333334444443 3367777643 2334556666655
No 418
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=55.63 E-value=7.7 Score=34.05 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=49.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----cc---ccCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MT---RGMDVE 402 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~---~GiDi~ 402 (515)
+.++||.++++..+..+++.+..... .+..+..++|+.....+ ......+..+|+|+|.- +. ..+++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~ 174 (245)
T 3dkp_A 98 GFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLA 174 (245)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCT
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccc
Confidence 45799999999999999998877532 34667777765432211 11223456789999942 11 246777
Q ss_pred CCCEEEEc
Q 010196 403 GVNNVVNY 410 (515)
Q Consensus 403 ~v~~VI~~ 410 (515)
++++||.-
T Consensus 175 ~~~~lViD 182 (245)
T 3dkp_A 175 SVEWLVVD 182 (245)
T ss_dssp TCCEEEES
T ss_pred cCcEEEEe
Confidence 88887753
No 419
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=55.46 E-value=5.6 Score=33.99 Aligned_cols=18 Identities=33% Similarity=0.161 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
+.-+.+.+|+|||||..+
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 456789999999999853
No 420
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=55.21 E-value=21 Score=35.57 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----cccc-C-CCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~~G-i-Di~~ 403 (515)
+.++||.+|++..+....+.+..+.. .+..+..++|+.+...+...+. ...+|+|+|.- +..+ + ++.+
T Consensus 55 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (556)
T 4a2p_A 55 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 130 (556)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEECCCC-----CHHHHH----HHCSEEEECHHHHHHHHHSSSCCCSTT
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEeCCCCcchhHHHhh----CCCCEEEECHHHHHHHHHhCccccccc
Confidence 67899999999999988888876521 2488999999987654432222 13689999853 2222 3 5667
Q ss_pred CCEEEEc
Q 010196 404 VNNVVNY 410 (515)
Q Consensus 404 v~~VI~~ 410 (515)
+++||.-
T Consensus 131 ~~~vViD 137 (556)
T 4a2p_A 131 FTLMIFD 137 (556)
T ss_dssp CSEEEEE
T ss_pred CCEEEEE
Confidence 8887763
No 421
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=55.00 E-value=5.8 Score=32.90 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=16.7
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.|+-+++.++.|+|||..++
T Consensus 15 ~G~gvli~G~SGaGKStlal 34 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSL 34 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHH
Confidence 36789999999999997643
No 422
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=54.95 E-value=6.9 Score=33.08 Aligned_cols=17 Identities=29% Similarity=0.425 Sum_probs=14.0
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.+++|||||...-
T Consensus 2 ~I~i~G~~GsGKsT~~~ 18 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISA 18 (205)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCccCHHHHHH
Confidence 47899999999998543
No 423
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=54.78 E-value=6.9 Score=32.46 Aligned_cols=16 Identities=31% Similarity=0.189 Sum_probs=13.6
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
-.+|.+|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5688999999999753
No 424
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=54.73 E-value=7.1 Score=33.08 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=14.3
Q ss_pred CCEEEECCCCchhHHHh
Q 010196 70 RDLCINSPTGSGKTLSY 86 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~ 86 (515)
..+++.++.|||||..+
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45889999999999854
No 425
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=54.38 E-value=28 Score=37.82 Aligned_cols=80 Identities=16% Similarity=0.194 Sum_probs=56.6
Q ss_pred CcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhccC---CcEE
Q 010196 100 RCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQSA---VDIL 176 (515)
Q Consensus 100 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~Iv 176 (515)
.+.++||.|+++.-++.+.+.+... .++++..++|+.+..+....+ ..++.+ ++|+
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l------------------~~F~~g~~~~~vL 560 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAA------------------AWFAEEDTGAQVL 560 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHH------------------HHHHSTTSSCEEE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHH------------------HHHhCCCCcccEE
Confidence 4458999999999988888887742 278899999998765543222 222232 7999
Q ss_pred EeCChHHHHHHhcCcCCCCCcceEEEEcchh
Q 010196 177 VATPGRLMDHINATRGFTLEHLCYLVVDETD 207 (515)
Q Consensus 177 v~Tp~~l~~~l~~~~~~~~~~~~~vViDEah 207 (515)
|+| ..+ ..++++..++.||+-+..
T Consensus 561 vaT-~v~------~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 561 LCS-EIG------SEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp ECS-CCT------TCSSCCTTCCEEECSSCC
T ss_pred Eec-chh------hcCCCcccCcEEEEecCC
Confidence 999 222 245788889999887765
No 426
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=54.33 E-value=7.4 Score=31.68 Aligned_cols=17 Identities=18% Similarity=0.087 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.++.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGS 18 (168)
T ss_dssp EEEEESCTTSCHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 427
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=54.08 E-value=7.3 Score=33.12 Aligned_cols=16 Identities=31% Similarity=0.279 Sum_probs=13.5
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
.+.+.++.|||||.+.
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999854
No 428
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=53.92 E-value=26 Score=37.12 Aligned_cols=75 Identities=12% Similarity=0.176 Sum_probs=48.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCC-CceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-----cccc-C-CCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGE-LRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-----MTRG-M-DVEG 403 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~-~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-----~~~G-i-Di~~ 403 (515)
+.++||.+|++..+....+.+..+.. .++.+..++|+.+...+...+. +..+|+|+|.- +..+ + ++.+
T Consensus 296 ~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 371 (797)
T 4a2q_A 296 KAKVVFLATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVI----EDSDIIVVTPQILVNSFEDGTLTSLSI 371 (797)
T ss_dssp CCCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECCC-----CHHHHH----HTCSEEEECHHHHHHHHHSSSCCCGGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhcccCCceEEEEeCCcchhhhHHHhh----CCCCEEEEchHHHHHHHHhcccccccc
Confidence 67899999999999998888876532 2588999999987655433222 25789999842 1222 3 5566
Q ss_pred CCEEEEc
Q 010196 404 VNNVVNY 410 (515)
Q Consensus 404 v~~VI~~ 410 (515)
+++||.-
T Consensus 372 ~~~iViD 378 (797)
T 4a2q_A 372 FTLMIFD 378 (797)
T ss_dssp CSEEEET
T ss_pred CCEEEEE
Confidence 7887753
No 429
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=53.82 E-value=32 Score=35.48 Aligned_cols=68 Identities=10% Similarity=0.123 Sum_probs=46.2
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhh-ccCCcEEEeC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQEL-QSAVDILVAT 179 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~Ivv~T 179 (515)
+.++||++|+++-++.+++.|+.. ++++..++|.. ... +...+ ....+|+|+|
T Consensus 410 ~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~e-R~~---------------------v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 410 AGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRKS-YDT---------------------EYPKCKNGDWDFVITT 463 (673)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSSS-HHH---------------------HGGGGGTCCCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChHH-HHH---------------------HHHHHHCCCceEEEEC
Confidence 457999999999999988888775 68888998841 111 11222 3457999999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEE
Q 010196 180 PGRLMDHINATRGFTLEHLCYLV 202 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vV 202 (515)
+.+. .++++. +++||
T Consensus 464 -----dv~e--~GIDip-v~~VI 478 (673)
T 2wv9_A 464 -----DISE--MGANFG-ASRVI 478 (673)
T ss_dssp -----GGGG--TTCCCC-CSEEE
T ss_pred -----chhh--cceeeC-CcEEE
Confidence 2233 346666 77766
No 430
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=53.75 E-value=7.8 Score=34.38 Aligned_cols=19 Identities=21% Similarity=0.471 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.+..+.|.+|+|||||..+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999854
No 431
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=53.71 E-value=5.1 Score=33.22 Aligned_cols=16 Identities=38% Similarity=0.306 Sum_probs=13.2
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999753
No 432
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=53.62 E-value=7.5 Score=33.20 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.-+++.++.|||||...-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 35678999999999998644
No 433
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=53.61 E-value=6 Score=33.26 Aligned_cols=17 Identities=29% Similarity=0.474 Sum_probs=14.0
Q ss_pred EEEECCCCchhHHHhHH
Q 010196 72 LCINSPTGSGKTLSYAL 88 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~~~ 88 (515)
+++.++.|||||...-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999986543
No 434
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=53.51 E-value=8.5 Score=31.32 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.6
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3566788999999999974
No 435
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=53.49 E-value=7.3 Score=35.99 Aligned_cols=24 Identities=17% Similarity=-0.058 Sum_probs=18.0
Q ss_pred CCCCEEEECCCCchhHHHhHHHHH
Q 010196 68 FERDLCINSPTGSGKTLSYALPIV 91 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~~~~ 91 (515)
.+..+++.+|+|+|||..++..+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 355679999999999986554433
No 436
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=53.35 E-value=6 Score=34.78 Aligned_cols=19 Identities=16% Similarity=0.100 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|+|+|||..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3578899999999999973
No 437
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=53.31 E-value=6.8 Score=33.79 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.6
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+++|||||..+-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999998644
No 438
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=53.22 E-value=8.3 Score=33.98 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.3
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
+..+++.+|.|||||..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999854
No 439
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=53.20 E-value=6.2 Score=37.16 Aligned_cols=36 Identities=25% Similarity=0.118 Sum_probs=22.7
Q ss_pred cchhhHHHHHHHhC----CCC-CCCC--EEEECCCCchhHHHh
Q 010196 51 LFPVQVAVWQETIG----PGL-FERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 51 ~~~~Q~~a~~~~~~----~~~-~~~~--~ii~a~TGsGKT~~~ 86 (515)
+..-|.+.+..+.. .++ .|.+ ++..++||||||.+.
T Consensus 60 ~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHH
T ss_pred CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEE
Confidence 44456665554321 122 3665 688999999999873
No 440
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.18 E-value=6 Score=33.94 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.4
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.-+++.+++|+|||..+-
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 46778899999999998543
No 441
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=53.12 E-value=6 Score=35.35 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+.-+++.|++|||||..+-
T Consensus 4 ~~lIvl~G~pGSGKSTla~ 22 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSK 22 (260)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHH
Confidence 3468899999999998644
No 442
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=53.08 E-value=7 Score=34.46 Aligned_cols=19 Identities=21% Similarity=0.219 Sum_probs=16.0
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
+..+++.+|.|||||..+-
T Consensus 29 ~~~I~l~G~~GsGKsT~a~ 47 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSL 47 (243)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 5579999999999998644
No 443
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=53.01 E-value=14 Score=34.12 Aligned_cols=15 Identities=20% Similarity=0.322 Sum_probs=12.9
Q ss_pred EEEECCCCchhHHHh
Q 010196 72 LCINSPTGSGKTLSY 86 (515)
Q Consensus 72 ~ii~a~TGsGKT~~~ 86 (515)
+.+.||+|||||..+
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999854
No 444
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=52.95 E-value=12 Score=37.33 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHhC-CCCCCCCEEEECCCCchhHHHhHHHHHHHhhh
Q 010196 58 VWQETIG-PGLFERDLCINSPTGSGKTLSYALPIVQTLSN 96 (515)
Q Consensus 58 a~~~~~~-~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~ 96 (515)
++..+.- .+..|.-+++.+|+|+|||......++.-+..
T Consensus 27 ~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 27 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 5555544 45578889999999999998655433444443
No 445
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=52.38 E-value=7.3 Score=33.03 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.7
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
.+.+.+++|||||..+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999854
No 446
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=52.27 E-value=8.2 Score=32.25 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.9
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.++.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~~~ 18 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAK 18 (195)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36789999999998643
No 447
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=52.18 E-value=18 Score=38.05 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.6
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
..+.+++.+|+|+|||+.+-
T Consensus 510 ~~~gvLl~GPPGtGKT~lAk 529 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAK 529 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHH
T ss_pred CCceEEEecCCCCCchHHHH
Confidence 35789999999999998543
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=52.05 E-value=7.5 Score=33.36 Aligned_cols=17 Identities=12% Similarity=0.100 Sum_probs=14.2
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.+++|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998643
No 449
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=51.98 E-value=9.1 Score=37.88 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=15.7
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.+++.+|+|+|||..+-
T Consensus 64 p~GvLL~GppGtGKTtLar 82 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLAR 82 (499)
T ss_dssp CSEEEEECSSSSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4569999999999998643
No 450
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=51.96 E-value=14 Score=35.79 Aligned_cols=36 Identities=22% Similarity=0.085 Sum_probs=22.7
Q ss_pred CCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEc
Q 010196 70 RDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVL 108 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~ 108 (515)
+.+++.+++|+|||.+..-.+...... .+.+++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~---~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREK---HKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHT---SCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHh---cCCeEEEEe
Confidence 357778999999998766544333222 133666663
No 451
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=51.65 E-value=8.4 Score=36.45 Aligned_cols=16 Identities=25% Similarity=0.569 Sum_probs=13.8
Q ss_pred CEEEECCCCchhHHHh
Q 010196 71 DLCINSPTGSGKTLSY 86 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~ 86 (515)
-.+|.+|||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5779999999999764
No 452
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=51.64 E-value=15 Score=34.61 Aligned_cols=19 Identities=32% Similarity=0.343 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
|.-+.+.+|+|+|||....
T Consensus 157 g~vi~lvG~nGsGKTTll~ 175 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLG 175 (359)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHH
Confidence 4557899999999998644
No 453
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=51.54 E-value=8.1 Score=41.01 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=17.4
Q ss_pred CCCCCEEEECCCCchhHHHhH
Q 010196 67 LFERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~~~ 87 (515)
..++.+++.+|+|+|||..+-
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLar 256 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIAR 256 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHHH
Confidence 357889999999999998543
No 454
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=51.35 E-value=8.2 Score=33.30 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp ETTCCEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3578899999999999973
No 455
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=51.34 E-value=8.5 Score=33.35 Aligned_cols=17 Identities=35% Similarity=0.491 Sum_probs=14.1
Q ss_pred CEEEECCCCchhHHHhH
Q 010196 71 DLCINSPTGSGKTLSYA 87 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~ 87 (515)
.+++.++.|||||..+-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGN 18 (223)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998644
No 456
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=50.44 E-value=14 Score=34.20 Aligned_cols=19 Identities=32% Similarity=0.275 Sum_probs=15.4
Q ss_pred CCCEEEECCCCchhHHHhH
Q 010196 69 ERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~ 87 (515)
|.-+.+.+|+|+|||....
T Consensus 129 g~vi~lvG~nGaGKTTll~ 147 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIA 147 (328)
T ss_dssp SEEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4558899999999998643
No 457
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=50.41 E-value=50 Score=34.04 Aligned_cols=77 Identities=17% Similarity=0.232 Sum_probs=53.7
Q ss_pred cEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecCCchHHHHHHHhccCcccccccCCchhHHHhhc---cCCcEEEeC
Q 010196 103 RALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQSSIADEISELIKRPKLEAGICYDPEDVLQELQ---SAVDILVAT 179 (515)
Q Consensus 103 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~Ivv~T 179 (515)
..+|+++++.-++++++.+.+. +..+..++|+.+..++.... ..+. +..+|+|+|
T Consensus 322 g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~------------------~~F~~~~g~~~VLVAT 379 (677)
T 3rc3_A 322 GDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQA------------------KKFNDPNDPCKILVAT 379 (677)
T ss_dssp TEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHH------------------HHHHCTTSSCCEEEEC
T ss_pred CCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHH------------------HHHHccCCCeEEEEeC
Confidence 3467788888888888888874 67899999999876443221 1222 347999999
Q ss_pred ChHHHHHHhcCcCCCCCcceEEEEcchhHH
Q 010196 180 PGRLMDHINATRGFTLEHLCYLVVDETDRL 209 (515)
Q Consensus 180 p~~l~~~l~~~~~~~~~~~~~vViDEah~l 209 (515)
. .+. .++++ ++++||.-.....
T Consensus 380 d-----i~e--~GlDi-~v~~VI~~~~~k~ 401 (677)
T 3rc3_A 380 D-----AIG--MGLNL-SIRRIIFYSLIKP 401 (677)
T ss_dssp G-----GGG--SSCCC-CBSEEEESCSBC-
T ss_pred c-----HHH--CCcCc-CccEEEECCcccc
Confidence 3 233 45778 8999998887653
No 458
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=50.14 E-value=7 Score=35.92 Aligned_cols=19 Identities=26% Similarity=0.531 Sum_probs=16.4
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|+|+|||..
T Consensus 78 ~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp CTTCEEEEESSSCHHHHHH
T ss_pred cCCCEEEEECCCCchHHHH
Confidence 4578899999999999974
No 459
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=50.11 E-value=7.2 Score=34.85 Aligned_cols=19 Identities=26% Similarity=0.218 Sum_probs=16.4
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|+|+|||..
T Consensus 44 ~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 4578899999999999974
No 460
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=49.88 E-value=15 Score=33.38 Aligned_cols=20 Identities=30% Similarity=0.223 Sum_probs=15.5
Q ss_pred CCCEEEECCCCchhHHHhHH
Q 010196 69 ERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~ 88 (515)
++-+.+.+++|+|||.....
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~ 117 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAK 117 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45577889999999986544
No 461
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=49.87 E-value=8.4 Score=32.51 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.6
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
..+.|.+++|||||...-
T Consensus 9 ~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp EEEEEEECTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 357899999999998543
No 462
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=49.69 E-value=28 Score=31.78 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=51.4
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc-----c-ccCCCCCC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM-----T-RGMDVEGV 404 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~-----~-~GiDi~~v 404 (515)
+.++||.+|++..+..+++.+...+ ..+..+..++|+.+....... +. ..+|+|+|.-. . ..+++.++
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINR---VR--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHH---HT--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhh---cC--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 6789999999999999999888654 235778889998886544332 32 37899999521 1 22456667
Q ss_pred CEEEE
Q 010196 405 NNVVN 409 (515)
Q Consensus 405 ~~VI~ 409 (515)
++||.
T Consensus 131 ~~iVi 135 (337)
T 2z0m_A 131 EIVII 135 (337)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77775
No 463
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=49.11 E-value=18 Score=26.39 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=30.6
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~ 370 (515)
..++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 56 ~~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (100)
T 3foj_A 56 NETYYIICKAGGRSAQVVQYLEQNG---VNAVNVEGGMD 91 (100)
T ss_dssp TSEEEEECSSSHHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCcEEEEcCCCchHHHHHHHHHHCC---CCEEEecccHH
Confidence 5689999999999999999999877 57888888864
No 464
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=49.10 E-value=31 Score=36.34 Aligned_cols=75 Identities=7% Similarity=-0.077 Sum_probs=52.7
Q ss_pred hcCCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCCc------cc----
Q 010196 329 SLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDAM------TR---- 397 (515)
Q Consensus 329 ~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~~------~~---- 397 (515)
...+..++|.++|+..|...++.+..+. ..++.+..+.|+++...|.... .++|+|+|+-- ..
T Consensus 112 ~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~i~GG~~~~~r~~~~------~~dIvvgTpgrl~fDyLrd~~~~ 185 (853)
T 2fsf_A 112 ALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGINLPGMPAPAKREAY------AADITYGTNNEYGFDYLRDNMAF 185 (853)
T ss_dssp HTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCS
T ss_pred HHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECCchhhHHHHHhhhhc
Confidence 3456789999999999988888776543 2358899999999876554433 37899999631 11
Q ss_pred ---cCCCCCCCEEEE
Q 010196 398 ---GMDVEGVNNVVN 409 (515)
Q Consensus 398 ---GiDi~~v~~VI~ 409 (515)
.++..++.++|.
T Consensus 186 ~~~~~~~~~l~~lVl 200 (853)
T 2fsf_A 186 SPEERVQRKLHYALV 200 (853)
T ss_dssp SGGGCCCCSCCEEEE
T ss_pred cHhHhcccCCcEEEE
Confidence 245566777764
No 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.97 E-value=8.4 Score=33.64 Aligned_cols=18 Identities=33% Similarity=0.370 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|.|+|||..
T Consensus 33 ~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577899999999999973
No 466
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=48.92 E-value=8.4 Score=34.10 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.8
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|+|+|||..
T Consensus 34 ~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999974
No 467
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=48.79 E-value=8.2 Score=34.83 Aligned_cols=18 Identities=22% Similarity=0.123 Sum_probs=15.6
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|+|+|||..
T Consensus 33 ~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp TTSEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477789999999999973
No 468
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=48.46 E-value=6.8 Score=37.01 Aligned_cols=19 Identities=32% Similarity=0.378 Sum_probs=15.2
Q ss_pred CCCC--EEEECCCCchhHHHh
Q 010196 68 FERD--LCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~--~ii~a~TGsGKT~~~ 86 (515)
.|.| ++..++||||||.+.
T Consensus 77 ~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 77 DGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp TTCEEEEEEEECTTSSHHHHH
T ss_pred cCCceEEEEECCCCCCCeEee
Confidence 4666 667899999999873
No 469
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=48.45 E-value=7.8 Score=33.31 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=14.7
Q ss_pred CCEEEECCCCchhHHHhH
Q 010196 70 RDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~~ 87 (515)
.-+.+.++.|||||.+.-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999998543
No 470
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=48.45 E-value=6.9 Score=37.14 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.1
Q ss_pred CCEEEECCCCchhHHHh
Q 010196 70 RDLCINSPTGSGKTLSY 86 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~ 86 (515)
.-.++.++||+|||...
T Consensus 26 gl~vi~G~NGaGKT~il 42 (371)
T 3auy_A 26 GIVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45789999999999863
No 471
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=47.83 E-value=18 Score=26.63 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~ 370 (515)
..++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 56 ~~~iv~yC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 91 (103)
T 3eme_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHCC---CCeEEeCCCHH
Confidence 5689999999888999999998877 67888888854
No 472
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=47.79 E-value=38 Score=35.71 Aligned_cols=76 Identities=11% Similarity=0.034 Sum_probs=53.7
Q ss_pred HhcCCCeEEEEcCChhhHHHHHHHHhhcC-CCceeEEEccCccCHHHHHHHHHHHhcCCceEEEecCC-c----------
Q 010196 328 QSLGEEKCIVFTSSVESTHRLCTLLNHFG-ELRIKIKEYSGLQRQSVRSKTLKAFREGKIQVLVSSDA-M---------- 395 (515)
Q Consensus 328 ~~~~~~~~lVf~~s~~~~~~l~~~L~~~~-~~~~~v~~~~~~~~~~~r~~~l~~f~~g~~~vLv~T~~-~---------- 395 (515)
....+..++|.++|+..|...++.+.... ..++.+..+.|+++...|.... .++|+++|+- +
T Consensus 120 ~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i~gg~~~~~r~~~~------~~dIv~gTpgrlgfD~L~D~m~ 193 (844)
T 1tf5_A 120 NALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLNLNSMSKDEKREAY------AADITYSTNNELGFDYLRDNMV 193 (844)
T ss_dssp HHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEECCTTSCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTC
T ss_pred HHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHhc------CCCEEEECchhhhHHHHHHhhh
Confidence 34456789999999999998888776542 2458899999999887665432 2689999961 1
Q ss_pred --cccCCCCCCCEEEE
Q 010196 396 --TRGMDVEGVNNVVN 409 (515)
Q Consensus 396 --~~GiDi~~v~~VI~ 409 (515)
...++...++++|.
T Consensus 194 ~~~~~l~lr~~~~lVl 209 (844)
T 1tf5_A 194 LYKEQMVQRPLHFAVI 209 (844)
T ss_dssp SSGGGCCCCCCCEEEE
T ss_pred cchhhhcccCCCEEEE
Confidence 11355667777664
No 473
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=47.66 E-value=17 Score=32.65 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3577899999999999973
No 474
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=47.55 E-value=8.3 Score=34.49 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 30 ~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577788999999999973
No 475
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=47.51 E-value=12 Score=31.96 Aligned_cols=17 Identities=29% Similarity=0.169 Sum_probs=13.9
Q ss_pred CCEEEECCCCchhHHHh
Q 010196 70 RDLCINSPTGSGKTLSY 86 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~ 86 (515)
.-.+|.+|+|+|||...
T Consensus 24 ~~~~I~G~NgsGKStil 40 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEEcCCCCCHHHHH
Confidence 45688999999999853
No 476
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=47.33 E-value=36 Score=36.79 Aligned_cols=101 Identities=18% Similarity=0.218 Sum_probs=49.9
Q ss_pred CchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecC--------CchHHHHHHHhc
Q 010196 79 GSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ--------SSIADEISELIK 150 (515)
Q Consensus 79 GsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~--------~~~~~~~~~~~~ 150 (515)
.++|.... .-++...... ..+.++||.++++..+..+.+.+.......++++..+.|. .+..++
T Consensus 611 ~~~K~~~L-~~lL~~~~~~-~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR------ 682 (936)
T 4a2w_A 611 ENPKLEEL-VCILDDAYRY-NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQ------ 682 (936)
T ss_dssp CCHHHHHH-HHHHHHTTTS-CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------
T ss_pred CCHHHHHH-HHHHHHHhcc-CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHH------
Confidence 46676542 2233222111 2356899999999999999999987633223455555443 332222
Q ss_pred cCcccccccCCchhHHHhhc--cCCcEEEeCChHHHHHHhcCcCCCCCcceEEEEcch
Q 010196 151 RPKLEAGICYDPEDVLQELQ--SAVDILVATPGRLMDHINATRGFTLEHLCYLVVDET 206 (515)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~--~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~vViDEa 206 (515)
..+...++ +..+|+|+|- .+. .++++..+++||.=+.
T Consensus 683 ------------~~il~~Fr~~g~~~VLVaT~-----~~~--eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 683 ------------KGVLDAFKTSKDNRLLIATS-----VAD--EGIDIVQCNLVVLYEY 721 (936)
T ss_dssp -----------------------CCSEEEEEC-----C--------CCCCSEEEEESC
T ss_pred ------------HHHHHHhhccCCeeEEEEeC-----chh--cCCcchhCCEEEEeCC
Confidence 12222333 3478999992 222 4577888888886433
No 477
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=47.32 E-value=7.1 Score=34.47 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=16.0
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|+|+|||..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp CTTEEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577789999999999973
No 478
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.28 E-value=9 Score=34.36 Aligned_cols=19 Identities=26% Similarity=0.356 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|+|+|||..
T Consensus 35 ~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp ETTCEEEEECCTTSCHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577889999999999973
No 479
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=47.20 E-value=13 Score=34.81 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=27.9
Q ss_pred CCCCCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHH
Q 010196 46 MGISSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 46 ~~~~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~ 85 (515)
.+..+++..-..++..+ -.+..|+-+.+.+|.|+|||..
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTL 87 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTL 87 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHH
T ss_pred cccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHH
Confidence 34444443234677776 4566789999999999999985
No 480
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.14 E-value=8.5 Score=34.27 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 39 ~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCcEEEEECCCCCCHHHH
Confidence 3577889999999999973
No 481
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=47.13 E-value=17 Score=27.04 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=30.8
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~ 370 (515)
..++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 55 ~~~ivvyC~~G~rs~~aa~~L~~~G---~~v~~l~GG~~ 90 (108)
T 3gk5_A 55 DKKYAVICAHGNRSAAAVEFLSQLG---LNIVDVEGGIQ 90 (108)
T ss_dssp TSCEEEECSSSHHHHHHHHHHHTTT---CCEEEETTHHH
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHcC---CCEEEEcCcHH
Confidence 5689999999888999999999877 57888999864
No 482
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=47.12 E-value=9.9 Score=40.06 Aligned_cols=21 Identities=19% Similarity=0.113 Sum_probs=17.5
Q ss_pred CCCCEEEECCCCchhHHHhHH
Q 010196 68 FERDLCINSPTGSGKTLSYAL 88 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~~ 88 (515)
.+.++++.+|+|+|||..+-.
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~ 226 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEG 226 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHH
Confidence 467899999999999986543
No 483
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=47.10 E-value=13 Score=34.82 Aligned_cols=24 Identities=21% Similarity=0.448 Sum_probs=19.7
Q ss_pred CCCCCCCCCCHHHHHHHHhCCCCC
Q 010196 27 CPLDHLPCLDPRLKVALQNMGISS 50 (515)
Q Consensus 27 ~~~~~~~~l~~~l~~~l~~~~~~~ 50 (515)
.+++.++|+++...+.|++.||.+
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t 58 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDT 58 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCS
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCc
Confidence 356677899999999999988864
No 484
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=47.08 E-value=10 Score=32.20 Aligned_cols=18 Identities=33% Similarity=0.206 Sum_probs=14.7
Q ss_pred CCCEEEECCCCchhHHHh
Q 010196 69 ERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~ 86 (515)
+.-+.+.+++|||||..+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 445788999999999854
No 485
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=47.07 E-value=32 Score=33.22 Aligned_cols=34 Identities=9% Similarity=0.003 Sum_probs=29.3
Q ss_pred cccEEEEcccHHHHHHHHHHHHHhccccCcEEEEeecC
Q 010196 101 CLRALVVLPTRDLALQVKDVFAAIAPAVGLSVGLAVGQ 138 (515)
Q Consensus 101 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 138 (515)
+.+++|++|++.-++.+++.+++. +.++..++|+
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~ 204 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRK 204 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTT
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCc
Confidence 347999999999999999998876 6788899886
No 486
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=47.05 E-value=11 Score=31.70 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=23.5
Q ss_pred CEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEEcccHHHHHHHHH
Q 010196 71 DLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVVLPTRDLALQVKD 119 (515)
Q Consensus 71 ~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil~Pt~~L~~q~~~ 119 (515)
.+.+.+++|||||.+.-...- .+ .+.+..+..++.+.+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~-~l---------g~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKN-KY---------GAHVVNVDRIGHEVLE 52 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-HH---------CCEEEEHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-hc---------CCEEEECcHHHHHHHH
Confidence 477899999999986443211 10 1344556666665544
No 487
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=47.03 E-value=11 Score=34.36 Aligned_cols=17 Identities=29% Similarity=0.528 Sum_probs=13.9
Q ss_pred CCEEEECCCCchhHHHh
Q 010196 70 RDLCINSPTGSGKTLSY 86 (515)
Q Consensus 70 ~~~ii~a~TGsGKT~~~ 86 (515)
.-+.|.+++|||||..+
T Consensus 32 ~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34678999999999854
No 488
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.92 E-value=9.4 Score=33.58 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|.|+|||..
T Consensus 31 ~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577789999999999973
No 489
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.88 E-value=9.4 Score=34.02 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|.|+|||..
T Consensus 32 ~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 577889999999999973
No 490
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=46.46 E-value=11 Score=33.74 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 44 ~~Ge~~~l~G~NGsGKSTL 62 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTL 62 (267)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3577899999999999974
No 491
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=46.39 E-value=1.3e+02 Score=29.43 Aligned_cols=70 Identities=13% Similarity=0.009 Sum_probs=40.1
Q ss_pred CCcchhhHHHHHHHhCCCCCCCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE-c--ccHHHHHHHHHHHHHh
Q 010196 49 SSLFPVQVAVWQETIGPGLFERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV-L--PTRDLALQVKDVFAAI 124 (515)
Q Consensus 49 ~~~~~~Q~~a~~~~~~~~~~~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil-~--Pt~~L~~q~~~~~~~~ 124 (515)
.+|-..=.+++..+++ +-+|+...|.++.|+|||...+-.+. +.......++|+ + ..++ +.++.+.+..-
T Consensus 143 ~epl~TGikaID~l~P-igrGQR~~Ifg~~g~GKT~l~l~~I~----n~~~~dv~~V~~~IGeR~~e-v~e~~~~l~~~ 215 (513)
T 3oaa_A 143 DQPVQTGYKAVDSMIP-IGRGQRELIIGDRQTGKTALAIDAII----NQRDSGIKCIYVAIGQKAST-ISNVVRKLEEH 215 (513)
T ss_dssp CCBCCCSCHHHHHHSC-CBTTCBCEEEESSSSSHHHHHHHHHH----TTSSSSCEEEEEEESCCHHH-HHHHHHHHHHH
T ss_pred Ccccccceeeeccccc-cccCCEEEeecCCCCCcchHHHHHHH----hhccCCceEEEEEecCChHH-HHHHHHHHhhc
Confidence 3444444467777554 55889999999999999986433333 322233333333 3 3333 34455556553
No 492
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.32 E-value=8.7 Score=33.38 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|.|+|||..
T Consensus 29 ~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp TTCEEEEEECTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 477788999999999973
No 493
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=46.26 E-value=9 Score=34.35 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=16.1
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577888999999999973
No 494
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=46.25 E-value=21 Score=25.63 Aligned_cols=35 Identities=9% Similarity=0.011 Sum_probs=29.6
Q ss_pred CeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccC
Q 010196 333 EKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (515)
Q Consensus 333 ~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~ 370 (515)
.++++||.+-..+...+..|...| +.+..+.|++.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G---~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEG---YEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHT---CCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcC---CcEEEEcccHH
Confidence 679999999888999999999877 55778888875
No 495
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=46.13 E-value=9 Score=34.28 Aligned_cols=19 Identities=26% Similarity=0.321 Sum_probs=16.2
Q ss_pred CCCCCEEEECCCCchhHHH
Q 010196 67 LFERDLCINSPTGSGKTLS 85 (515)
Q Consensus 67 ~~~~~~ii~a~TGsGKT~~ 85 (515)
..|.-+.+.+|.|+|||..
T Consensus 48 ~~Gei~~liG~NGsGKSTL 66 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTF 66 (263)
T ss_dssp CTTCEEEEECCTTSSHHHH
T ss_pred cCCCEEEEEcCCCCcHHHH
Confidence 3577889999999999973
No 496
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=46.04 E-value=20 Score=43.29 Aligned_cols=19 Identities=37% Similarity=0.630 Sum_probs=16.8
Q ss_pred CCCCEEEECCCCchhHHHh
Q 010196 68 FERDLCINSPTGSGKTLSY 86 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~ 86 (515)
.++++++.||||+|||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4789999999999999853
No 497
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=45.84 E-value=20 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.155 Sum_probs=29.3
Q ss_pred CCeEEEEcCChhhHHHHHHHHhhcCCCceeEEEccCccC
Q 010196 332 EEKCIVFTSSVESTHRLCTLLNHFGELRIKIKEYSGLQR 370 (515)
Q Consensus 332 ~~~~lVf~~s~~~~~~l~~~L~~~~~~~~~v~~~~~~~~ 370 (515)
..+++++|.+-..+...+..|...| +.+..+.|++.
T Consensus 56 ~~~ivv~C~~G~rS~~aa~~L~~~G---~~~~~l~GG~~ 91 (103)
T 3iwh_A 56 NEIYYIVCAGGVRSAKVVEYLEANG---IDAVNVEGGMH 91 (103)
T ss_dssp TSEEEEECSSSSHHHHHHHHHHTTT---CEEEEETTHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHHHcC---CCEEEecChHH
Confidence 5689999999888999999999877 66667778753
No 498
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=45.68 E-value=11 Score=33.10 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=15.5
Q ss_pred CCCCEEEECCCCchhHHHhH
Q 010196 68 FERDLCINSPTGSGKTLSYA 87 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~~~ 87 (515)
.+.-+.+.+|.|||||..+-
T Consensus 24 ~g~iigI~G~~GsGKSTl~k 43 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCE 43 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 34557799999999998643
No 499
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=45.32 E-value=10 Score=33.58 Aligned_cols=18 Identities=28% Similarity=0.388 Sum_probs=15.7
Q ss_pred CCCCEEEECCCCchhHHH
Q 010196 68 FERDLCINSPTGSGKTLS 85 (515)
Q Consensus 68 ~~~~~ii~a~TGsGKT~~ 85 (515)
.|.-+.+.+|.|+|||..
T Consensus 25 ~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp TTCEEEEECCTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577789999999999973
No 500
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=45.20 E-value=22 Score=35.04 Aligned_cols=35 Identities=11% Similarity=0.110 Sum_probs=21.7
Q ss_pred CCCEEEECCCCchhHHHhHHHHHHHhhhcccCcccEEEE
Q 010196 69 ERDLCINSPTGSGKTLSYALPIVQTLSNRAVRCLRALVV 107 (515)
Q Consensus 69 ~~~~ii~a~TGsGKT~~~~~~~~~~l~~~~~~~~~~lil 107 (515)
|.-+.+.+++|+|||..... +..+... .+..+++.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~--LAgll~~--~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGK--LARQFEQ--QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHH--HHHHHHH--TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHHHH--HHHHhhh--cCCeEEEe
Confidence 44578999999999986443 3333321 23356665
Done!