BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010199
         (515 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A3L|A Chain A, X-Ray Structure Of Adenosine 5'-Monophosphate Deaminase
           From Arabidopsis Thaliana In Complex With Coformycin
           5'-Phosphate
          Length = 701

 Score =  593 bits (1530), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 288/352 (81%), Positives = 316/352 (89%), Gaps = 5/352 (1%)

Query: 145 SPKSPVASA--FESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASS 202
           SPKSPVASA  FESVE SD++DN+T+S  LD +YL  NG+    +P   N    ++AASS
Sbjct: 2   SPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDN--EMPADANEEQISMAASS 59

Query: 203 MIRSHSVSGDLHGVQPDPIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLE 262
           MIRSHSVSGDLHGVQPDPIAADILRKEPEQETF RL + P EVP+ DE+EAY  LQECLE
Sbjct: 60  MIRSHSVSGDLHGVQPDPIAADILRKEPEQETFVRLNV-PLEVPTSDEVEAYKCLQECLE 118

Query: 263 MRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSK 322
           +RKRY+F+E VAPWEKE+ISDPSTPKPN +PF + P GKSDH FEMQDGV+HV+ NKD+K
Sbjct: 119 LRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQGKSDHCFEMQDGVVHVFANKDAK 178

Query: 323 EELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKS 382
           E+L+PVADAT FFTDLHH+L+VIA GN+RTLCH RL+LLEQKFNLHLMLNADKEFLAQKS
Sbjct: 179 EDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLAQKS 238

Query: 383 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESL 442
           APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTL+EVFESL
Sbjct: 239 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESL 298

Query: 443 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQG 494
           DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQG
Sbjct: 299 DLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQG 350


>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
          Length = 273

 Score = 28.9 bits (63), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 10/81 (12%)

Query: 152 SAFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEAIAASSMIRSHSV-- 209
           +A++ ++   E D   D  K+D   L+ +G+A   +P    + A  IA++++++  ++  
Sbjct: 192 NAYDCIKAFSETDFTEDLKKIDVPTLVVHGDADQVVP----IEASGIASAALVKGSTLKI 247

Query: 210 -SGDLHGV---QPDPIAADIL 226
            SG  HG+     D + AD+L
Sbjct: 248 YSGAPHGLTDTHKDQLNADLL 268


>pdb|1YUA|A Chain A, C-Terminal Domain Of Escherichia Coli Topoisomerase I
          Length = 122

 Score = 28.9 bits (63), Expect = 7.9,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 280 MISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKD----SKEELYPVADATTFF 335
           M  + + PK +P P    P  KSD +F ++DG   V+   +    S+E   P+ +    F
Sbjct: 1   MNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGVFLAANTFPKSRETRAPLVEELYRF 60

Query: 336 TD-LHHILRVIA 346
            D L   LR +A
Sbjct: 61  RDRLPEKLRYLA 72


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.134    0.395 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,218,312
Number of Sequences: 62578
Number of extensions: 634607
Number of successful extensions: 2003
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1999
Number of HSP's gapped (non-prelim): 6
length of query: 515
length of database: 14,973,337
effective HSP length: 103
effective length of query: 412
effective length of database: 8,527,803
effective search space: 3513454836
effective search space used: 3513454836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)