Query 010199
Match_columns 515
No_of_seqs 166 out of 343
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 22:12:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010199hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02768 AMP deaminase 100.0 8E-154 2E-158 1254.5 41.6 490 1-508 1-496 (835)
2 PLN03055 AMP deaminase; Provis 100.0 5.7E-84 1.2E-88 694.0 25.6 262 244-508 2-263 (602)
3 KOG1096 Adenosine monophosphat 100.0 2.4E-83 5.2E-88 685.9 21.3 308 198-507 83-431 (768)
4 TIGR01429 AMP_deaminase AMP de 100.0 4.7E-78 1E-82 649.7 23.6 259 248-508 1-284 (611)
5 PTZ00310 AMP deaminase; Provis 100.0 1.5E-74 3.2E-79 657.9 22.9 263 232-509 689-959 (1453)
6 PTZ00310 AMP deaminase; Provis 100.0 1.2E-66 2.6E-71 593.3 23.0 260 226-508 56-320 (1453)
7 cd01319 AMPD AMP deaminase (AM 100.0 1.3E-66 2.8E-71 552.1 13.7 174 334-509 1-174 (496)
8 PF00962 A_deaminase: Adenosin 94.6 0.0025 5.5E-08 64.2 -4.0 34 390-423 1-34 (331)
9 cd00443 ADA_AMPD Adenosine/AMP 90.9 0.11 2.3E-06 53.0 1.3 24 392-415 2-25 (305)
10 cd01320 ADA Adenosine deaminas 77.0 2.4 5.1E-05 43.0 3.4 53 390-442 1-58 (325)
11 TIGR01430 aden_deam adenosine 64.3 4.4 9.5E-05 41.3 2.1 25 392-416 2-26 (324)
12 PRK09358 adenosine deaminase; 45.9 13 0.00028 38.1 2.0 28 389-416 8-35 (340)
13 PF01726 LexA_DNA_bind: LexA D 43.4 20 0.00043 29.4 2.3 31 406-445 8-38 (65)
14 KOG4741 Uncharacterized conser 42.9 19 0.00041 35.1 2.5 62 427-492 86-147 (173)
15 CHL00082 psbZ photosystem II p 32.0 40 0.00086 28.1 2.4 19 4-22 3-21 (62)
16 COG1816 Add Adenosine deaminas 30.8 13 0.00028 39.7 -0.8 57 449-507 2-58 (345)
17 PF07521 RMMBL: RNA-metabolisi 30.0 64 0.0014 24.2 3.0 27 398-427 12-38 (43)
18 cd08588 PI-PLCc_At5g67130_like 27.0 95 0.0021 31.8 4.7 50 396-445 63-122 (270)
19 PRK02576 psbZ photosystem II r 24.2 66 0.0014 26.8 2.4 19 4-22 3-21 (62)
20 PF02186 TFIIE_beta: TFIIE bet 23.8 64 0.0014 26.7 2.3 25 408-445 9-33 (65)
21 TIGR03043 PS_II_psbZ photosyst 23.3 64 0.0014 26.6 2.1 18 5-22 1-18 (58)
22 PF07304 SRA1: Steroid recepto 22.8 1.6E+02 0.0035 28.0 5.1 37 330-366 43-82 (157)
23 PTZ00124 adenosine deaminase; 22.0 55 0.0012 35.0 1.9 27 390-416 34-60 (362)
24 cd06535 CIDE_N_CAD CIDE_N doma 21.5 1.5E+02 0.0032 25.8 4.0 41 402-443 19-61 (77)
25 PF01737 Ycf9: YCF9; InterPro 20.6 91 0.002 25.8 2.5 19 5-23 1-19 (59)
No 1
>PLN02768 AMP deaminase
Probab=100.00 E-value=7.9e-154 Score=1254.50 Aligned_cols=490 Identities=81% Similarity=1.205 Sum_probs=461.1
Q ss_pred CchhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCcCCCCccccccccccccccccccCCCCccc
Q 010199 1 MDAYTLHLAMAALVGASVVAVSAYYMHRKTLTQLLEFAKSVERERDDNSDAAESPHHVKRHGCAAARRCSSRRKGSGYYR 80 (515)
Q Consensus 1 m~~~~lhlAmAALvGAS~~A~sa~y~H~rtv~qvl~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (515)
|.+|+||||||||||||+|||||||||||||||||++|+|+||++...+.+. ..|..+++++++||
T Consensus 1 ~~~~~l~la~aalvgas~~a~~a~~~h~~~~~q~~~~~~~~~r~~~~~~~~~--------------~~~~~~~~~~~~~~ 66 (835)
T PLN02768 1 MEPYALHLALAALVGASFVAVSAYYMHRKTLDQLLEFAKTLDRNREGDEPQN--------------PTSQVRRKGNDYYR 66 (835)
T ss_pred CchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccC--------------CccccccCCccccc
Confidence 6799999999999999999999999999999999999999999876444332 14446667999999
Q ss_pred cccCCCCCceecccCCcCCcccC-CCCccccCCCCCCCCcccCCCC-CccCCCCcccccccccCcCCCCC--cccccccc
Q 010199 81 RCSASLPDVTAISGHAVDGEERR-NGPLHVDGIPAGLPRLHTLPEG-KSAGHASSTKRAGNLIRPTSPKS--PVASAFES 156 (515)
Q Consensus 81 ~~s~slP~~~~~~~~~~~~~~~~-~~~~~~~~IP~GLP~L~t~~~g-~~~~~~~s~~r~~~~~r~~~p~s--~~~~~~~~ 156 (515)
|||+||||++++++++.++...+ +.+.++++||+|||||||+|+| ++.+|+||+||+|+++||||||| |++|||||
T Consensus 67 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ip~glp~l~t~~~~~~~~~~~~s~~r~~~~~r~~~p~s~~~~~~a~~~ 146 (835)
T PLN02768 67 RGSASLPDATAFSGGGDDGDEPRDGHHVYVDGIPPGLPRLHTGPEGKASVHGAGSTKRVGSFIRPTSPKSPVASASAFES 146 (835)
T ss_pred cccccCCCcccccCCCCCCCccccCcccccCCCCCCCCCCccCCCCCCcccCccccccccccccCCCCCCCCcccchhhh
Confidence 99999999999994444333333 4668999999999999999996 56799999999999999999999 55699999
Q ss_pred ccCCccccccccCCCCcccccccCCCCCCCCCcccccchHH--hhhhcccccccccCCCCCCCCCccchhhhhcCccccC
Q 010199 157 VEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET 234 (515)
Q Consensus 157 ~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rS~S~~~d~~~v~~~~~~~~ilrkep~~~~ 234 (515)
+||||||++++.+++.|++|+++||+.+. ++++..||++ +++..||||||+.||||++||||.+++||||+||+++
T Consensus 147 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (835)
T PLN02768 147 VEGSDDEDNLTDNEKLDTTYLHTNGNVEL--PDHADANGEQIPIPASSMIRSHSVSGDLHGVQPDPIAADILRKEPEQET 224 (835)
T ss_pred ccCCccccccCCcccccchhhccCCCCCC--ccccccCcccccccchhceeccccCCccccCCCCchHHHHhhcCchhhh
Confidence 99999999999999999999999999985 8888999988 8889999999999999999999999999999999999
Q ss_pred ccceeeCCCCCCChhHHHHHHHHHHHHHhhhhcCCCcCCCccccccccCCCCCCCCCCCCCcCCCCCCCceEEeeCcEEE
Q 010199 235 FARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIH 314 (515)
Q Consensus 235 fqRv~I~~~~~p~~d~~ea~k~L~~AL~LR~KYmf~~~~~~~~~~~~~dp~~p~p~~dPf~~~~~~~~~~~f~m~dGV~~ 314 (515)
|||+.|+|.++|.+|++++++.|.+||.||+||||....++|+.+...++.+|+|.+|||++.+++++++.|+|+||||+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~ky~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 304 (835)
T PLN02768 225 FVRLNITPLEVPSPDEVEAYKVLQECLELRKRYVFREEVAPWEKEIISDPSTPKPNPNPFSYTPEGKSDHYFEMQDGVVH 304 (835)
T ss_pred hhccccccCCCccHHHHHHHHHHHHHHHHHHHHccCCCCCCccccccCCCCCCCCCCCCcccCCCCCCCeEEEecCCEEE
Confidence 99999999999999999999999999999999999989999998877788899999999999999999999999999999
Q ss_pred EecCCCCCcccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhhhccCCCCcccccccc
Q 010199 315 VYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKV 394 (515)
Q Consensus 315 Vy~~~~~~~~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e~K~vphRDFYNvrKV 394 (515)
||++.+..+..+|+|+|++|+.|++.|+++|++||+||||++||+|||+||+||++||+++|..++|.+|||||||||||
T Consensus 305 v~~~~~~~~~~~p~~~~~~F~~D~~~l~~~i~dg~~ksfc~~RL~~Le~Kf~Lh~lLN~~~E~~~~K~~phrDFYnvrKV 384 (835)
T PLN02768 305 VYANKDSKEELFPVADATTFFTDLHHILRVIAAGNIRTLCHHRLNLLEQKFNLHLMLNADREFLAQKSAPHRDFYNVRKV 384 (835)
T ss_pred EeeCCCCCcccCCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhcchhhhHhhccCCCCCceeeeEe
Confidence 99888777778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccCCCccccCccccccCC
Q 010199 395 DTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN 474 (515)
Q Consensus 395 DtHVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn~KYN 474 (515)
||||||||||||||||+|||+|++++||+||+.++|+.+||+|||+++++++|+||||.|||||+++||||||+||+|||
T Consensus 385 Dthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ydLsVD~Ldvha~~~tfhRfDkFn~kyn 464 (835)
T PLN02768 385 DTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYN 464 (835)
T ss_pred eccchhhccCCHHHHHHHHHHHHhcCCCceeeccCCccccHHHHHHHcCCcccCCcccccccCCCccccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHhhhcCCCCccceecchhhhhhhhhh
Q 010199 475 PCGQSRLREIFLKQDNLIQGMSCLFSYLLCHAIK 508 (515)
Q Consensus 475 P~G~s~LReIFLKTDN~i~GrYfA~~~~~~~~~~ 508 (515)
|+|+++||+|||||||+|+||||| |++..+|+
T Consensus 465 P~G~s~LReiFLktDN~i~GrYfA--ELiK~V~~ 496 (835)
T PLN02768 465 PCGQSRLREIFLKQDNLIQGRFLA--ELTKQVFS 496 (835)
T ss_pred ccchHHHHHHHcCcCCCCChhhHH--HHHHHHHH
Confidence 999999999999999999999998 99999997
No 2
>PLN03055 AMP deaminase; Provisional
Probab=100.00 E-value=5.7e-84 Score=694.04 Aligned_cols=262 Identities=76% Similarity=1.218 Sum_probs=253.4
Q ss_pred CCCChhHHHHHHHHHHHHHhhhhcCCCcCCCccccccccCCCCCCCCCCCCCcCCCCCCCceEEeeCcEEEEecCCCCCc
Q 010199 244 EVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHHFEMQDGVIHVYPNKDSKE 323 (515)
Q Consensus 244 ~~p~~d~~ea~k~L~~AL~LR~KYmf~~~~~~~~~~~~~dp~~p~p~~dPf~~~~~~~~~~~f~m~dGV~~Vy~~~~~~~ 323 (515)
+.|..+++++++.|++||.||++|+|.+..+|| ++.+.++++|.|.+|||.+.+++++++.|+|+||||+||.+++..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~v~~~~~~~~ 80 (602)
T PLN03055 2 DAPSDEEEEVCAMMQECLELRDKYLFREKLPPW-RKGIFESSTSKPNPDPFRYEPEPPSQHVFRMVDGVMHVYAPDDAKE 80 (602)
T ss_pred CCCChHHHHHHHHHHHHHHhhhhhcccCCCCcc-ccCCCCCCCCCCCCCCCCCCCCCCCCeeEEEeCCEEEEecCCcCCC
Confidence 457789999999999999999999999999999 6666778899999999999999999999999999999999877777
Q ss_pred ccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhhhccCCCCccccccccccccccccc
Q 010199 324 ELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSAC 403 (515)
Q Consensus 324 ~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e~K~vphRDFYNvrKVDtHVH~Sac 403 (515)
..+|+|+|++|+.|++.|+++|++||++|||++||+|||+||+||++||+++|..++|++||||||||||||||||||||
T Consensus 81 ~~~~~p~~~~f~~D~~~l~~~~~~g~~~s~~~~RL~~Le~kf~L~~~lN~~~E~~~~k~~p~rDFyn~rKVDthvh~s~c 160 (602)
T PLN03055 81 ELFPVPDATTFFTDMHRILRIVSLGNVRTFCHHRLKLLEQKFSLHLMLNADREFLAQKSAPHRDFYNVRKVDTHVHHSSC 160 (602)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhccCCCCCceeeeEeecccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccCCCccccCccccccCCCCchhHHHH
Q 010199 404 MNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLRE 483 (515)
Q Consensus 404 MnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn~KYNP~G~s~LRe 483 (515)
|||||||+|||+|++++||+||+.++|+.+||+|||+++++++|+||||+|||||+++||||||+||+||||+|+++||+
T Consensus 161 m~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evfe~l~~~~~dLtVd~Ldvha~~~~fhrfD~fn~kynp~g~s~Lr~ 240 (602)
T PLN03055 161 MNQKHLLRFIKSKLRKEPDEVVIFRDGKYLTLREVFESLDLTGYDLNVDLLDVHADKNTFHRFDKFNLKYNPCGQSRLRE 240 (602)
T ss_pred CCHHHHHHHHHHHHHcCCCcEeecCCCcchhHHHHHHHcCCCcccCcccccCccCCCCcccccccccccCCccchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCccceecchhhhhhhhhh
Q 010199 484 IFLKQDNLIQGMSCLFSYLLCHAIK 508 (515)
Q Consensus 484 IFLKTDN~i~GrYfA~~~~~~~~~~ 508 (515)
|||||||+|+||||| |++..+|+
T Consensus 241 iFLktdN~i~G~YlA--el~k~v~~ 263 (602)
T PLN03055 241 IFLKQDNLIQGRFLA--ELTKEVFS 263 (602)
T ss_pred HHcCcCCCcchhhHH--HHHHHHHH
Confidence 999999999999998 99999987
No 3
>KOG1096 consensus Adenosine monophosphate deaminase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.4e-83 Score=685.90 Aligned_cols=308 Identities=50% Similarity=0.732 Sum_probs=256.5
Q ss_pred hhhhcccccccccCCCC--CCCC-Ccc--chhhhhcCc---cccCccceeeCC---CCCCChhHHHHHHHHHHHHHhhhh
Q 010199 198 IAASSMIRSHSVSGDLH--GVQP-DPI--AADILRKEP---EQETFARLQITP---KEVPSPDEMEAYVVLQECLEMRKR 266 (515)
Q Consensus 198 ~~~~~~~rS~S~~~d~~--~v~~-~~~--~~~ilrkep---~~~~fqRv~I~~---~~~p~~d~~ea~k~L~~AL~LR~K 266 (515)
.+.+.+.||+|.+.... ++++ .+. ..++..-.| ....|||+.|+| +++|.+|+..+++.|.+|+.+|+|
T Consensus 83 ~~~~~~~~s~~~~~~~~d~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~tedl~~~~k~l~~~l~~r~k 162 (768)
T KOG1096|consen 83 EKDSLGPRSQSFSKSESDSEVQSYTLSDSKQGITLFTPRDQMGVRFQRVAITGEELEGVPTEDLADASKSLAKALFLREK 162 (768)
T ss_pred cCCCCCccccccccccCcccccccCccccccccccCCchhhhccchheeeccCcccCCCCHHHHHHHHhhhHHHHHHHHH
Confidence 34566778887775433 4442 221 222221122 347899999998 458999999999999999999999
Q ss_pred cCCCcCCCcccccc-----c------------cCCC--CC------CCCCCCCCcC-CCCCCCceEEeeCcEEEEecCCC
Q 010199 267 YLFREAVAPWEKEM-----I------------SDPS--TP------KPNPDPFYYA-PVGKSDHHFEMQDGVIHVYPNKD 320 (515)
Q Consensus 267 Ymf~~~~~~~~~~~-----~------------~dp~--~p------~p~~dPf~~~-~~~~~~~~f~m~dGV~~Vy~~~~ 320 (515)
||..+....++... . .++. +| .+..+|+... ++++.++.++|.+||++|+.+.+
T Consensus 163 y~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~~~~~~~~l~m~~~v~~v~~~~~ 242 (768)
T KOG1096|consen 163 YMRISLQRFPDTTRNYLSGLAYPLPKYYYNESYDTKSHPPGKGNPPGEYFEPFDPEDPGEKLDYHLRMQDGVVHVYYDGK 242 (768)
T ss_pred HhhhhhhcCCcccccccCCCCCCCcccCcccccccccCCcccCCCCccccccccccccCcccceEEEecCCeeEeecCCc
Confidence 99654322222110 0 0111 11 1122345443 46677899999999999997765
Q ss_pred ----CCcccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhhhccCCCCcccccccccc
Q 010199 321 ----SKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDT 396 (515)
Q Consensus 321 ----~~~~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e~K~vphRDFYNvrKVDt 396 (515)
..+..+||||+++|+.|+++|+++|++||+|+||+|||+|||+||+||++||+++|+.++|++|||||||||||||
T Consensus 243 ~~~~~~~~~~~iPt~~ef~~D~~~ll~lI~dgp~ksf~~RRLqyLe~KF~l~~~LNe~~El~~~K~vPHRDFYNvRKVDt 322 (768)
T KOG1096|consen 243 EDSHAEEVLLPIPTLQEFRDDFEKLLALIADGPLKSFCHRRLQYLESKFQLHQLLNEKKELLAQKKVPHRDFYNVRKVDT 322 (768)
T ss_pred hhhhccCcCCCCCcHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCcccccccchhcc
Confidence 2456789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccCCCccccCccccccCCCC
Q 010199 397 HVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPC 476 (515)
Q Consensus 397 HVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn~KYNP~ 476 (515)
||||||||||||||||||+||++|||+||+.++|+.+||+|||+++|+++|||+||+|||||+++||||||+||+||||.
T Consensus 323 hih~SaCmnQkhLlrFIk~klr~epdrvV~~~~g~~lTLrevF~~l~L~~yDlsvd~ldvha~~~tfHrfdkfn~Kynp~ 402 (768)
T KOG1096|consen 323 HIHASACMNQKHLLRFIKKKLRKEPDRVVIQRDGRKLTLREVFKSLGLTAYDLSVDTLDVHADRNTFHRFDKFNAKYNPV 402 (768)
T ss_pred hhhHhhhcCHHHHHHHHHHHhhcCCceEEEecCCceeeHHHHHHHcCCceeccchhHHHhhhchhhhhccchhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHhhhcCCCCccceecchhhhhhhhh
Q 010199 477 GQSRLREIFLKQDNLIQGMSCLFSYLLCHAI 507 (515)
Q Consensus 477 G~s~LReIFLKTDN~i~GrYfA~~~~~~~~~ 507 (515)
|+++||+|||||||||+|+||| |++..++
T Consensus 403 g~s~LR~iFLktDNyI~GeYlA--ei~Kev~ 431 (768)
T KOG1096|consen 403 GESRLREIFLKTDNYINGEYLA--EILKEVL 431 (768)
T ss_pred cHHHHHHHHHhhccccchhhHH--HHHHHHH
Confidence 9999999999999999999998 7776554
No 4
>TIGR01429 AMP_deaminase AMP deaminase. This model describes AMP deaminase, a large, well-conserved eukaryotic protein involved in energy metabolism. Most members of the family have an additional, poorly alignable region of 150 amino acids or more N-terminal to the region included in the model.
Probab=100.00 E-value=4.7e-78 Score=649.69 Aligned_cols=259 Identities=50% Similarity=0.763 Sum_probs=227.3
Q ss_pred hhHHHHHHHHHHHHHhhhhcCCCc------CCC---cccc-------c-cccCCC-CCCCCCCCCCc--CCC-CCCCceE
Q 010199 248 PDEMEAYVVLQECLEMRKRYLFRE------AVA---PWEK-------E-MISDPS-TPKPNPDPFYY--APV-GKSDHHF 306 (515)
Q Consensus 248 ~d~~ea~k~L~~AL~LR~KYmf~~------~~~---~~~~-------~-~~~dp~-~p~p~~dPf~~--~~~-~~~~~~f 306 (515)
+|++++++.|++||.||+|||..+ ++. .|.. + ...+.. +|.+.++||.. ..+ ++.++.|
T Consensus 1 ~~~~~~~~~~~~~~~~r~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (611)
T TIGR01429 1 EDLAEAAKSLAKALMLREKYARLAYHRFPDTTAQYLSHQGYPESVPLEEGLPDFHPPPDPQEDPYCLDDDAPPIELGYLV 80 (611)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCCCCCCchhccCCCCCCCCCCccccccCcCCCCCCcCCCCcccCCCCCCCCCceE
Confidence 478999999999999999999422 111 1211 0 111111 23334566653 233 3788999
Q ss_pred EeeCcEEEEecCCCCC----cccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhhhcc
Q 010199 307 EMQDGVIHVYPNKDSK----EELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKS 382 (515)
Q Consensus 307 ~m~dGV~~Vy~~~~~~----~~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e~K~ 382 (515)
+|++|||+||.++... ....++|||++|+.|++.|+++|++||+||||++||+|||+||+||++||+++|..++|+
T Consensus 81 ~~~~gv~~v~~~~~~~~~~~~~~~~~~~~~~f~~D~~~l~~~~~~g~~~s~~~~RL~~Le~kf~L~~llN~~~E~~~~k~ 160 (611)
T TIGR01429 81 RMHGGVLFVYDNDTMLERQEPHFLVPPTLKTYYVDMEHLLALISDGPTKSFCFRRLQYLESKFNLHELLNEMSELKEQKS 160 (611)
T ss_pred EecCCEEEEEcCcchhhcCCccccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhcc
Confidence 9999999999876542 223466899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccccccccccccCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccCCCc
Q 010199 383 APHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKST 462 (515)
Q Consensus 383 vphRDFYNvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~t 462 (515)
+|||||||||||||||||||||||||||+|||+|++++||+||+.++|+.+||+|||+++|+++|+||||+|||||++++
T Consensus 161 ~p~rDFyn~rKVDthvh~s~cm~qk~LL~FIk~k~~~~pd~vV~~~~gk~~TL~evf~~l~l~~~dltvd~Ldv~a~~~~ 240 (611)
T TIGR01429 161 VPHRDFYNVRKVDTHIHAAASMNQKHLLRFIKHKLKTEPDETVIERDGKKLTLREVFDSLHLDPYDLSVDTLDVHADRNT 240 (611)
T ss_pred CCCCCceeeEEeeccccccccCCHHHHHHHHHHHHHcCCCcEEecCCCccccHHHHHHHcCCChhhCcHhhhCCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCccccccCCCCchhHHHHhhhcCCCCccceecchhhhhhhhhh
Q 010199 463 FHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGMSCLFSYLLCHAIK 508 (515)
Q Consensus 463 FhRFD~Fn~KYNP~G~s~LReIFLKTDN~i~GrYfA~~~~~~~~~~ 508 (515)
|||||+||+||||+|+++||+|||||||+|+|+||| |++..+|+
T Consensus 241 fhrfd~fn~kynp~G~s~Lr~iFLktdN~i~G~YfA--elik~v~~ 284 (611)
T TIGR01429 241 FHRFDKFNLKYNPVGESRLREIFLKTDNYIGGKYFA--ELVKEVFT 284 (611)
T ss_pred cccccccccccCccchHHHHHHHhccCCCcchhhHH--HHHHHHHH
Confidence 999999999999999999999999999999999998 99999986
No 5
>PTZ00310 AMP deaminase; Provisional
Probab=100.00 E-value=1.5e-74 Score=657.86 Aligned_cols=263 Identities=32% Similarity=0.513 Sum_probs=231.8
Q ss_pred ccCccceeeCCCCCCChhHHHHHHHHHHHHHhhhhcCCCcCCCcccccc----ccC--CCCCCCCCCCCCcCCCCCCCce
Q 010199 232 QETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEM----ISD--PSTPKPNPDPFYYAPVGKSDHH 305 (515)
Q Consensus 232 ~~~fqRv~I~~~~~p~~d~~ea~k~L~~AL~LR~KYmf~~~~~~~~~~~----~~d--p~~p~p~~dPf~~~~~~~~~~~ 305 (515)
...|+|+.+.|..- ..+..+|++.|.+||.+|+||+|.. ..+|+... ..+ ..+..++++ .+.
T Consensus 689 ~~~fPR~I~~gp~~-~~~~~~~~~~l~~~~~lr~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~ 756 (1453)
T PTZ00310 689 RVRFPRTVLYGPHK-SGKAVTAAPALARALDLRHKYIWNP-PPPWETTQRNVVEEDFQRTTRQFNED----------QWT 756 (1453)
T ss_pred cccCceEEecCCcc-cchHHHHHHHHHHHHHHHHHhhcCC-CCccccccccccccccccccCCCCCC----------cee
Confidence 35699998887421 2457899999999999999999874 35676431 111 111223333 446
Q ss_pred EEeeCcEEEEecCCCCCcccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhh--hhhccC
Q 010199 306 FEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEF--LAQKSA 383 (515)
Q Consensus 306 f~m~dGV~~Vy~~~~~~~~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~--~e~K~v 383 (515)
|+|.||||.||...........+|++++|+.|++.|+++|++||+|+||++||+|||+||+||++||+..|. .++|.+
T Consensus 757 ~~~~dgv~~~~~~~~~~~~~~~~p~~~~f~~D~~~l~~~~~~~~~ksf~~~RL~~Le~kf~Lh~~lN~~~E~~~~~~k~~ 836 (1453)
T PTZ00310 757 YAAYDGVFILSPKGAVHAWPRFLPTLTEFIRDLSELRDICSSVEVKRLATKRLENLEHKFRLHLALNHSNEAGTTEERES 836 (1453)
T ss_pred EeccCcEEEEeeCCcccccccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHhhcC
Confidence 899999999997654333344689999999999999999999999999999999999999999999999996 799999
Q ss_pred CCCccccccccccccccccccCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccCCCcc
Q 010199 384 PHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTF 463 (515)
Q Consensus 384 phRDFYNvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~tF 463 (515)
|||||||||||||||||||||||||||+|||+|++++||+||+.++|+++||+|||+++|+|+| ||||+||||||++||
T Consensus 837 ~~rDFYn~rKVDthih~sacm~qk~LL~FIk~kl~~~~d~vV~~~~g~~~TL~evF~~l~~t~~-lsvd~L~v~ad~~~f 915 (1453)
T PTZ00310 837 SNRDFYQAYKVDTHIHMAAGMTARQLLEFVVDKLLESGDDIAFKRGDHIVTLGQLFSKYGITPN-LTVDQLNVQADHTLF 915 (1453)
T ss_pred CCCCceeeeeeccccchhccCCHHHHHHHHHHHHhcCCCcEEEcCCCccccHHHHHHHcCCCcc-cchhhhccccCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccCccccccCCCCchhHHHHhhhcCCCCccceecchhhhhhhhhhc
Q 010199 464 HRFDKFNLKYNPCGQSRLREIFLKQDNLIQGMSCLFSYLLCHAIKL 509 (515)
Q Consensus 464 hRFD~Fn~KYNP~G~s~LReIFLKTDN~i~GrYfA~~~~~~~~~~~ 509 (515)
||||+||.||||+|+++||+|||||||||+||||| |++..+|+.
T Consensus 916 ~rfD~fn~kynP~g~s~LreiFLktDN~i~G~YfA--el~K~v~~~ 959 (1453)
T PTZ00310 916 ERFDNFNSKYNPMENPDLRSLLLKTDNFMKGRYFA--ELIKDVFEQ 959 (1453)
T ss_pred hhhhcccccCCCcccHHHHHHHccCCCCcccHhHH--HHHHHHHHH
Confidence 99999999999999999999999999999999998 999988864
No 6
>PTZ00310 AMP deaminase; Provisional
Probab=100.00 E-value=1.2e-66 Score=593.27 Aligned_cols=260 Identities=23% Similarity=0.336 Sum_probs=228.9
Q ss_pred hhcCccccCccceeeCCCCCCChhHHHHHHHHHHHHHhhhhcCCCcCCCccccccccCCCCCCCCCCCCCcCCCCCCCce
Q 010199 226 LRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPVGKSDHH 305 (515)
Q Consensus 226 lrkep~~~~fqRv~I~~~~~p~~d~~ea~k~L~~AL~LR~KYmf~~~~~~~~~~~~~dp~~p~p~~dPf~~~~~~~~~~~ 305 (515)
+....+.++|.+|.|.|+++ ..|+.+|++.|..||.+|++|+..++..........++.+ +..+.++
T Consensus 56 ~~~~~~~~~~~~v~idgddg-~~~~~~~~~~l~~ai~~r~~yk~~d~g~~~g~~~~~~~~~------------~~~~~~~ 122 (1453)
T PTZ00310 56 VSLAAVASTMFRVVIDGDDG-GVDMRKVHGRIAAAIRVRQLYKPTDTKVPEGEREQPSDST------------PMPSLVT 122 (1453)
T ss_pred hhhhccccceEEEEecCCCc-chHHHHHHHHHHHHHHHHHhhhccCCCcCcCCccCccccC------------CCCCceE
Confidence 33444567899999999665 3699999999999999999999776543322211111111 2346778
Q ss_pred EEeeCcEEEEecCCCCCcccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhhhccCCC
Q 010199 306 FEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPH 385 (515)
Q Consensus 306 f~m~dGV~~Vy~~~~~~~~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e~K~vph 385 (515)
|+|+||||+|+..+ ....+| |+|++|+.|++.|++++++|||+|||++||+|||+||+||++||+++|..+++..+|
T Consensus 123 ~~~~~GV~~v~~~~--~~~~~~-p~~~~F~~D~~~l~~~v~~g~~ks~c~~RL~~Le~Kf~L~~llN~~~E~~~~~~~~~ 199 (1453)
T PTZ00310 123 IVQRDGVYRFSGMD--TSVVLP-PPWEQYVRDVQAVYLTVGNGPCLSACRHRLTIIQERSRMFFLLNAEIEERADLYKAG 199 (1453)
T ss_pred EEEeCCEEEeecCC--cccccC-CCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHchhhhhhcCcCCCC
Confidence 99999999998553 233445 999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccccccccccCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCC-Ccccccccccccc--CCCc
Q 010199 386 RDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLT-GYDLNVDLLDVHA--DKST 462 (515)
Q Consensus 386 RDFYNvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt-~~dLtVD~Ldvha--d~~t 462 (515)
|||||||||||||||||||||||||+|||+|++++||+||++++|+++||+|||+++|++ +|+||||+||||| +++|
T Consensus 200 ~dFyn~rKVDthvh~sacMnqk~LLrFIk~kl~~epd~vV~~~~Gk~~TL~evFesl~lt~~~dLTVd~Ldvha~~drnt 279 (1453)
T PTZ00310 200 GVFSPCTKVDNAVLLSTSVDAQELLEFVVTTYREQPRAPLRLRDGSNSTLREYLEAHGVRDPRELTVEGLGWQPTKYRNK 279 (1453)
T ss_pred CceeecceeecccchhccCCHHHHHHHHHHHHhcCCCcEEEcCCCccccHHHHHHhcCCCCccccchhhcCCcccccccc
Confidence 999999999999999999999999999999999999999999999999999999999996 9999999999999 7899
Q ss_pred cccCccccccCCCCch--hHHHHhhhcCCCCccceecchhhhhhhhhh
Q 010199 463 FHRFDKFNLKYNPCGQ--SRLREIFLKQDNLIQGMSCLFSYLLCHAIK 508 (515)
Q Consensus 463 FhRFD~Fn~KYNP~G~--s~LReIFLKTDN~i~GrYfA~~~~~~~~~~ 508 (515)
|||||+||.| ||+|+ ++||+||||| +|+||| ++++.+|+
T Consensus 280 fhrFDkFn~K-NP~G~~~s~LReiFLkT----~G~y~a--~liK~vi~ 320 (1453)
T PTZ00310 280 YGQYDLFDAK-NPMGALGAELRQSFLSL----HGNLCG--KLLRRELE 320 (1453)
T ss_pred cccccccccc-CCCccchhHHHHHHHhc----CcHHHH--HHHHHHHH
Confidence 9999999999 99999 9999999999 689987 89888886
No 7
>cd01319 AMPD AMP deaminase (AMPD) catalyzes the hydrolytic deamination of adensosine monophosphate (AMP) at position 6 of the adenine nucleotide ring. AMPD is a diverse and highly regulated eukaryotic key enzyme of the adenylate catabolic pathway.
Probab=100.00 E-value=1.3e-66 Score=552.11 Aligned_cols=174 Identities=67% Similarity=1.051 Sum_probs=171.7
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhhhccCCCCccccccccccccccccccCHHHHHHHH
Q 010199 334 FFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLAQKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFI 413 (515)
Q Consensus 334 F~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e~K~vphRDFYNvrKVDtHVH~SacMnqKhLL~FI 413 (515)
|+.|++.|+++|++||++|||++||+|||+||+||++||+++|..++|.+|||||||||||||||||||||||||||+||
T Consensus 1 ~~~D~~~l~~~~~~~~~~s~~~~RL~~L~~kf~l~~~lN~~~E~~~~k~~~~rdfyn~~KVD~~vh~s~cm~~k~Ll~FI 80 (496)
T cd01319 1 FYLDLEFLLALISDGPAKSFCYRRLQYLESKFQLHVLLNEDRELKEQKTVPHRDFYNVRKVDTHVHHSACMNQKHLLRFI 80 (496)
T ss_pred ChhHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccCCCCCceeCceecccccccccCCHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccCCCccccCccccccCCCCchhHHHHhhhcCCCCcc
Q 010199 414 KSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQ 493 (515)
Q Consensus 414 k~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn~KYNP~G~s~LReIFLKTDN~i~ 493 (515)
|+|++++||+||+.++|+++||+|||+++|+++|+||||+|||||++++|||||+||+||||+|+++||+|||||||+|+
T Consensus 81 ~~k~~~~pd~vv~~~~g~~~TL~e~f~~l~~~~~~ltvd~L~~~a~~~~~~rfd~fn~kynp~g~~~Lr~iFLktdn~~~ 160 (496)
T cd01319 81 KKKLRTEPDEVVIFRDGKKLTLKEVFDSLKLTAYDLSVDTLDVHADRNTFHRFDKFNLKYNPIGESRLREIFLKTDNYIN 160 (496)
T ss_pred HHHHHcCCCcEEECCCCccccHHHHHHHcCCChhhCchhhcCcCCCCCccccccccccccCccchHHHHHHHhccCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecchhhhhhhhhhc
Q 010199 494 GMSCLFSYLLCHAIKL 509 (515)
Q Consensus 494 GrYfA~~~~~~~~~~~ 509 (515)
|+||| |+++.+|+.
T Consensus 161 G~y~A--el~k~v~~~ 174 (496)
T cd01319 161 GRYLA--EITKEVFSD 174 (496)
T ss_pred hHhHH--HHHHHHHHH
Confidence 99998 999999874
No 8
>PF00962 A_deaminase: Adenosine/AMP deaminase immunodeficiency disease (SCID); InterPro: IPR001365 Adenosine deaminase (3.5.4.4 from EC) catalyzes the hydrolytic deamination of adenosine into inosine and AMP deaminase (3.5.4.6 from EC) catalyzes the hydrolytic deamination of AMP into IMP. It has been shown [] that these two enzymes share three regions of sequence similarities; these regions are centred on residues which are proposed to play an important role in the catalytic mechanism of these two enzymes.; GO: 0019239 deaminase activity, 0009168 purine ribonucleoside monophosphate biosynthetic process; PDB: 3LGG_B 3LGD_B 2AMX_B 3EWD_A 2QVN_A 2PGF_A 2PGR_A 3EWC_A 1W1I_G 1O5R_A ....
Probab=94.64 E-value=0.0025 Score=64.17 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=27.5
Q ss_pred cccccccccccccccCHHHHHHHHHHHhhcCCCc
Q 010199 390 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDE 423 (515)
Q Consensus 390 NvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~ 423 (515)
|..|||.|+|++|||+...|+++++++...++..
T Consensus 1 m~pK~eLH~HL~Gsi~~~~l~ela~~~~~~~~~~ 34 (331)
T PF00962_consen 1 MLPKAELHIHLDGSISPETLLELAKKNNICELPA 34 (331)
T ss_dssp TS-EEEEEEEGGGSS-HHHHHHHHHHCTCC-TTS
T ss_pred CCCEEEeeeCCccCCCHHHHHHHHHhCCCCcccc
Confidence 6789999999999999999999999988774433
No 9
>cd00443 ADA_AMPD Adenosine/AMP deaminase. Adenosine deaminases (ADAs) are present in pro- and eukaryotic organisms and catalyze the zinc dependent irreversible deamination of adenosine nucleosides to inosine nucleosides and ammonia. The eukaryotic AMP deaminase catalyzes a similar reaction leading to the hydrolytic removal of an amino group at the 6 position of the adenine nucleotide ring, a branch point in the adenylate catabolic pathway.
Probab=90.89 E-value=0.11 Score=53.02 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=23.2
Q ss_pred cccccccccccccCHHHHHHHHHH
Q 010199 392 RKVDTHVHHSACMNQKHLLRFIKS 415 (515)
Q Consensus 392 rKVDtHVH~SacMnqKhLL~FIk~ 415 (515)
.|||.|+|+.|||.+..|++++++
T Consensus 2 PK~eLH~Hl~Gsi~~~~l~~l~~~ 25 (305)
T cd00443 2 PKVELHAHLSGSISPETLLELIKK 25 (305)
T ss_pred CceeEEecCcCCCCHHHHHHHHHH
Confidence 599999999999999999999999
No 10
>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively. ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.
Probab=76.99 E-value=2.4 Score=42.97 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=35.4
Q ss_pred cccccccccccccccCHHHHHHHHHHHhhcCCCceE----Ec-cCCccccHHHHHHhC
Q 010199 390 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVV----IF-RDGTYLTLKEVFESL 442 (515)
Q Consensus 390 NvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV----~~-~dGk~~TL~evFe~l 442 (515)
|.-|||.|+|+.||+....|.++.+++=...|.... .. .-+...+|.+.|+..
T Consensus 1 ~lpK~elH~Hl~Gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 58 (325)
T cd01320 1 NLPKAELHLHLDGSLRPETILELAKKNGITLPASDVELLELVVAAYNFSDLQDFLAKY 58 (325)
T ss_pred CCCceEEeecccCCCCHHHHHHHHHHhCCCCCCCCHHHHHHHhccccCCCHHHHHHHH
Confidence 678999999999999999999988876333332111 01 122345777777643
No 11
>TIGR01430 aden_deam adenosine deaminase. This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.
Probab=64.26 E-value=4.4 Score=41.26 Aligned_cols=25 Identities=20% Similarity=0.428 Sum_probs=22.1
Q ss_pred cccccccccccccCHHHHHHHHHHH
Q 010199 392 RKVDTHVHHSACMNQKHLLRFIKSK 416 (515)
Q Consensus 392 rKVDtHVH~SacMnqKhLL~FIk~K 416 (515)
-|||.|+|+.||.....|.++.++.
T Consensus 2 pK~eLH~Hl~Gsi~~~~l~~l~~~~ 26 (324)
T TIGR01430 2 PKAELHLHLEGSIRPETLLELAQKN 26 (324)
T ss_pred CceeeEecccCCCCHHHHHHHHHHc
Confidence 4999999999999999999976644
No 12
>PRK09358 adenosine deaminase; Provisional
Probab=45.89 E-value=13 Score=38.13 Aligned_cols=28 Identities=14% Similarity=0.396 Sum_probs=23.8
Q ss_pred ccccccccccccccccCHHHHHHHHHHH
Q 010199 389 YNVRKVDTHVHHSACMNQKHLLRFIKSK 416 (515)
Q Consensus 389 YNvrKVDtHVH~SacMnqKhLL~FIk~K 416 (515)
-+.-|||.|+|+.||+....|++..++.
T Consensus 8 ~~lpK~eLH~Hl~Gs~~~~~l~~l~~~~ 35 (340)
T PRK09358 8 RSLPKAELHLHLDGSLRPETILELARRN 35 (340)
T ss_pred hcCCceeEEecccCCCCHHHHHHHHHHc
Confidence 4578999999999999998888876655
No 13
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=43.36 E-value=20 Score=29.37 Aligned_cols=31 Identities=35% Similarity=0.573 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCC
Q 010199 406 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLT 445 (515)
Q Consensus 406 qKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt 445 (515)
|++.|+||++-+.++ |-+-|.+||-+.+|+.
T Consensus 8 Q~~vL~~I~~~~~~~---------G~~Pt~rEIa~~~g~~ 38 (65)
T PF01726_consen 8 QKEVLEFIREYIEEN---------GYPPTVREIAEALGLK 38 (65)
T ss_dssp HHHHHHHHHHHHHHH---------SS---HHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHHc---------CCCCCHHHHHHHhCCC
Confidence 789999999988754 6778999999999985
No 14
>KOG4741 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.95 E-value=19 Score=35.12 Aligned_cols=62 Identities=23% Similarity=0.291 Sum_probs=51.8
Q ss_pred ccCCccccHHHHHHhCCCCCccccccccccccCCCccccCccccccCCCCchhHHHHhhhcCCCCc
Q 010199 427 FRDGTYLTLKEVFESLDLTGYDLNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLI 492 (515)
Q Consensus 427 ~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad~~tFhRFD~Fn~KYNP~G~s~LReIFLKTDN~i 492 (515)
+++|.++++++|-|.++....+-+++.|.-+-+...+..|=+.. |+.-+++-+=|.|-+|||
T Consensus 86 ~~ngrpl~~r~v~Ei~~t~l~e~~~~~Itq~eHP~Lg~pyy~LH----PC~Tse~mke~~k~sNyi 147 (173)
T KOG4741|consen 86 CRNGRPLRVRQVAEILGTKLEENDAIVITQSEHPTLGIPYYKLH----PCDTSELMKEIPKRSNYI 147 (173)
T ss_pred hcCCCchhhhhhHHhhcCccccCccceeeeccCCcccceeeeec----CCcHHHHHhhcCCchHHH
Confidence 37999999999999999887777777777777777777775443 999999999999999886
No 15
>CHL00082 psbZ photosystem II protein Z
Probab=31.96 E-value=40 Score=28.09 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=16.3
Q ss_pred hhHHHHHHHHhhhhHHHHH
Q 010199 4 YTLHLAMAALVGASVVAVS 22 (515)
Q Consensus 4 ~~lhlAmAALvGAS~~A~s 22 (515)
...|+|++|||..||+.+-
T Consensus 3 i~fQl~v~aLi~~Sf~LVV 21 (62)
T CHL00082 3 IAFQLAVFALIATSFLLVI 21 (62)
T ss_pred eHHHHHHHHHHHHHHHHHh
Confidence 4689999999999998763
No 16
>COG1816 Add Adenosine deaminase [Nucleotide transport and metabolism]
Probab=30.82 E-value=13 Score=39.74 Aligned_cols=57 Identities=14% Similarity=-0.065 Sum_probs=47.4
Q ss_pred ccccccccccCCCccccCccccccCCCCchhHHHHhhhcCCCCccceecchhhhhhhhh
Q 010199 449 LNVDLLDVHADKSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGMSCLFSYLLCHAI 507 (515)
Q Consensus 449 LtVD~Ldvhad~~tFhRFD~Fn~KYNP~G~s~LReIFLKTDN~i~GrYfA~~~~~~~~~ 507 (515)
+.++.+++|+.+..+||+...|.++.+.++...|..+.++.+...+.+++ |+.....
T Consensus 2 ~~~~~~~~~~pkaelH~HL~g~l~p~~v~~la~r~gi~~~~~~~~~~~~~--~~~~~~~ 58 (345)
T COG1816 2 MDILELIRHLPKAELHRHLEGSLRPELVLELARRYGIALPPAEFDETILE--ELRAEYN 58 (345)
T ss_pred cchHHHHhhchhhHhhhcccCCcCHHHHHHHHHHhCccCCcccccchhHH--HHHHHHh
Confidence 46778899999999999999999999999999999988887777777765 5555444
No 17
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=29.97 E-value=64 Score=24.17 Aligned_cols=27 Identities=26% Similarity=0.580 Sum_probs=20.7
Q ss_pred cccccccCHHHHHHHHHHHhhcCCCceEEc
Q 010199 398 VHHSACMNQKHLLRFIKSKLRKEPDEVVIF 427 (515)
Q Consensus 398 VH~SacMnqKhLL~FIk~Kl~~epd~vV~~ 427 (515)
++.||..++.+|++||..- .|..+|.+
T Consensus 12 ~~fSgHad~~~L~~~i~~~---~p~~vilV 38 (43)
T PF07521_consen 12 IDFSGHADREELLEFIEQL---NPRKVILV 38 (43)
T ss_dssp SGCSSS-BHHHHHHHHHHH---CSSEEEEE
T ss_pred EeecCCCCHHHHHHHHHhc---CCCEEEEe
Confidence 5699999999999999887 56655543
No 18
>cd08588 PI-PLCc_At5g67130_like Catalytic domain of Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. This subfamily corresponds to the catalytic domain present in Arabidopsis thaliana PI-PLC X domain-containing protein At5g67130 and its uncharacterized homologs. Members in this family show high sequence similarity to bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13), which participates in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG).
Probab=26.98 E-value=95 Score=31.84 Aligned_cols=50 Identities=28% Similarity=0.357 Sum_probs=36.1
Q ss_pred ccccccccc-----CHHHHHHHHHHHhhcCCCceEEc--cCCcc--c-cHHHHHHhCCCC
Q 010199 396 THVHHSACM-----NQKHLLRFIKSKLRKEPDEVVIF--RDGTY--L-TLKEVFESLDLT 445 (515)
Q Consensus 396 tHVH~SacM-----nqKhLL~FIk~Kl~~epd~vV~~--~dGk~--~-TL~evFe~l~lt 445 (515)
-+++|+.|- .-...|+=|++-|..+|+|||++ ++.-. . .+..+|+.-++.
T Consensus 63 ~~lcH~~~~~~~~~~~~d~L~~i~~fL~~nP~EvV~l~l~~~~~~~~~~~~~~~~~~gl~ 122 (270)
T cd08588 63 LRLCHSVCGLGDGGPLSDVLREVVDFLDANPNEVVTLFLEDYVSPGPLLRSKLFRVAGLT 122 (270)
T ss_pred EEEECCCccccCCccHHHHHHHHHHHHHhCCCcEEEEEEEeCCCcchHHHHHHhhhcCcc
Confidence 466777765 57888899999999999999986 33222 2 378888765653
No 19
>PRK02576 psbZ photosystem II reaction center protein Z; Provisional
Probab=24.24 E-value=66 Score=26.84 Aligned_cols=19 Identities=42% Similarity=0.385 Sum_probs=16.2
Q ss_pred hhHHHHHHHHhhhhHHHHH
Q 010199 4 YTLHLAMAALVGASVVAVS 22 (515)
Q Consensus 4 ~~lhlAmAALvGAS~~A~s 22 (515)
-..|+|+.||+..||+.+-
T Consensus 3 i~fQl~v~aLi~~SfiLVV 21 (62)
T PRK02576 3 ILFQLALLALVVMSFVLVV 21 (62)
T ss_pred eHHHHHHHHHHHHHHHHHh
Confidence 3689999999999998763
No 20
>PF02186 TFIIE_beta: TFIIE beta subunit core domain; InterPro: IPR003166 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This entry represents the beta subunit of the transcription factor TFIIE.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005673 transcription factor TFIIE complex; PDB: 1D8K_A 1D8J_A.
Probab=23.79 E-value=64 Score=26.65 Aligned_cols=25 Identities=28% Similarity=0.555 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCC
Q 010199 408 HLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLT 445 (515)
Q Consensus 408 hLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt 445 (515)
...+|||++ ++++|+.||.+.++++
T Consensus 9 ~~VeymK~r-------------~~Plt~~eI~d~l~~d 33 (65)
T PF02186_consen 9 KAVEYMKKR-------------DHPLTLEEILDYLSLD 33 (65)
T ss_dssp HHHHHHHHH--------------S-B-HHHHHHHHTSS
T ss_pred HHHHHHHhc-------------CCCcCHHHHHHHHcCC
Confidence 456788887 6799999999988754
No 21
>TIGR03043 PS_II_psbZ photosystem II core protein PsbZ. PsbZ is a core protein of photosystem II in thylakoid-containing Cyanobacteria and plant chloroplasts. The original Chlamydomonas gene symbol, ycf9, is a synonym. PsbZ controls the interaction of the reaction center core with the light-harvesting antenna.
Probab=23.30 E-value=64 Score=26.58 Aligned_cols=18 Identities=44% Similarity=0.381 Sum_probs=15.3
Q ss_pred hHHHHHHHHhhhhHHHHH
Q 010199 5 TLHLAMAALVGASVVAVS 22 (515)
Q Consensus 5 ~lhlAmAALvGAS~~A~s 22 (515)
..|+|++||+-.|++.+-
T Consensus 1 ~fQl~v~aLi~~Sf~LVV 18 (58)
T TIGR03043 1 IFQLAVLALVLLSFVLVV 18 (58)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 369999999999998764
No 22
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=22.81 E-value=1.6e+02 Score=27.97 Aligned_cols=37 Identities=16% Similarity=0.215 Sum_probs=27.5
Q ss_pred ChHHHHHHHHHHHHHHhcCCchh---hHHHHHHHHHHhhh
Q 010199 330 DATTFFTDLHHILRVIALGNMRT---LCHHRLLLLEQKFN 366 (515)
Q Consensus 330 s~~eF~~D~~~l~~ii~~gp~ks---fc~rRL~yLe~KF~ 366 (515)
.+++++..++.++..+...--|. =|.|||++|+.+++
T Consensus 43 ~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln 82 (157)
T PF07304_consen 43 PIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLN 82 (157)
T ss_dssp -HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHh
Confidence 45777788888887776544444 47899999999987
No 23
>PTZ00124 adenosine deaminase; Provisional
Probab=21.96 E-value=55 Score=35.00 Aligned_cols=27 Identities=22% Similarity=0.484 Sum_probs=23.3
Q ss_pred cccccccccccccccCHHHHHHHHHHH
Q 010199 390 NVRKVDTHVHHSACMNQKHLLRFIKSK 416 (515)
Q Consensus 390 NvrKVDtHVH~SacMnqKhLL~FIk~K 416 (515)
+.-||+-|+|+.||+....|++..++.
T Consensus 34 ~lPKvELH~HLdGsi~~~tl~~La~~~ 60 (362)
T PTZ00124 34 RIPKCELHCHLDLCFSVDFFLSCIRKY 60 (362)
T ss_pred cCCceeEeecccCCCCHHHHHHHHHHc
Confidence 356999999999999999999888643
No 24
>cd06535 CIDE_N_CAD CIDE_N domain of CAD nuclease. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and the release of active DFF40/CAD nuclease.
Probab=21.53 E-value=1.5e+02 Score=25.76 Aligned_cols=41 Identities=34% Similarity=0.406 Sum_probs=32.6
Q ss_pred cccCHHHHHHHHHHHhhcC--CCceEEccCCccccHHHHHHhCC
Q 010199 402 ACMNQKHLLRFIKSKLRKE--PDEVVIFRDGTYLTLKEVFESLD 443 (515)
Q Consensus 402 acMnqKhLL~FIk~Kl~~e--pd~vV~~~dGk~~TL~evFe~l~ 443 (515)
++-|=++|+.=-.+|+.-. +=++|..+||+.+| .|.|+.|.
T Consensus 19 ~A~sL~eL~~K~~~~l~l~~~~~~l~L~eDGTeVt-EeyF~tLp 61 (77)
T cd06535 19 AAKNLKELLRKGCRLLQLPCAGSRLCLYEDGTEVT-EEYFPTLP 61 (77)
T ss_pred EcCCHHHHHHHHHHHhCCCCCCcEEEEecCCcEeh-HHHHhcCC
Confidence 3445688888888888876 44777779999998 99999775
No 25
>PF01737 Ycf9: YCF9; InterPro: IPR002644 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents PsbZ (Ycf9), which is a core low molecular weight transmembrane protein of photosystem II in thylakoid-containing chloroplasts of cyanobacteria and plants. It is thought to be located at the interface of PSII and LHCII (light-harvesting complex II) complexes, the latter containing the light-harvesting antenna. PsbZ appears to act as a structural factor, or linker, that stabilises the PSII-LHCII supercomplexes, which fail to form in PsbZ-deficient mutants. This may in part be due to the marked decrease in two LHCII antenna proteins, CP26 and CP29, found in PsbZ-deficient mutants, which result in structural changes, as well as functional modifications in PSII []. PsbZ may also be involved in photo-protective processes under sub-optimal growth conditions.; GO: 0015979 photosynthesis, 0042549 photosystem II stabilization, 0009523 photosystem II, 0009539 photosystem II reaction center; PDB: 3A0B_Z 3ARC_Z 3A0H_Z 3PRQ_Z 4FBY_l 2AXT_z 3PRR_Z 3BZ1_Z 3KZI_Z 1S5L_Z ....
Probab=20.60 E-value=91 Score=25.81 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.9
Q ss_pred hHHHHHHHHhhhhHHHHHH
Q 010199 5 TLHLAMAALVGASVVAVSA 23 (515)
Q Consensus 5 ~lhlAmAALvGAS~~A~sa 23 (515)
.+|+|++||+..||+-+-+
T Consensus 1 ~fQl~v~aLi~~Sf~LVVg 19 (59)
T PF01737_consen 1 IFQLAVFALIALSFLLVVG 19 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 4799999999999987643
Done!