Query 010199
Match_columns 515
No_of_seqs 166 out of 343
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 22:03:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010199.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010199hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a3l_A AMP deaminase, AMPD; at 100.0 1.8E-92 6.1E-97 773.0 17.5 359 144-509 1-363 (701)
2 2pgf_A Adenosine deaminase; me 65.8 2.5 8.4E-05 42.8 2.1 52 390-442 43-100 (371)
3 3k2z_A LEXA repressor; winged 33.6 22 0.00074 32.4 2.6 32 405-445 6-37 (196)
4 2jt1_A PEFI protein; solution 31.4 28 0.00096 28.2 2.7 33 406-446 6-38 (77)
5 4gxw_A Adenosine deaminase; am 29.8 19 0.00066 36.9 1.8 32 385-416 22-54 (380)
6 3pao_A Adenosine deaminase; st 22.3 38 0.0013 33.8 2.3 30 387-416 5-35 (326)
7 3iar_A Adenosine deaminase; pu 22.3 48 0.0016 33.8 3.0 55 389-443 4-63 (367)
8 3arc_Z Photosystem II reaction 21.8 52 0.0018 26.3 2.5 20 4-23 3-22 (62)
9 3rys_A Adenosine deaminase 1; 21.8 39 0.0013 34.0 2.3 27 390-416 12-38 (343)
10 2k4m_A TR8_protein, UPF0146 pr 21.0 1.4E+02 0.0048 27.5 5.5 70 397-472 7-83 (153)
11 2k1k_A Ephrin type-A receptor 20.7 54 0.0018 23.6 2.2 21 9-29 17-37 (38)
No 1
>2a3l_A AMP deaminase, AMPD; atampd, AT2G38280, adenosine 5'-monophosphate deaminase, COF 5'-phosphate, structural genomics; HET: CF5; 3.34A {Arabidopsis thaliana} SCOP: c.1.9.1
Probab=100.00 E-value=1.8e-92 Score=773.03 Aligned_cols=359 Identities=80% Similarity=1.213 Sum_probs=267.7
Q ss_pred CCCCCcccc--ccccccCCccccccccCCCCcccccccCCCCCCCCCcccccchHH--hhhhcccccccccCCCCCCCCC
Q 010199 144 TSPKSPVAS--AFESVEGSDEEDNMTDSSKLDTTYLLTNGNAGPNLPDHMNVNAEA--IAASSMIRSHSVSGDLHGVQPD 219 (515)
Q Consensus 144 ~~p~s~~~~--~~~~~~~sd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~rS~S~~~d~~~v~~~ 219 (515)
|||||||++ ||+|+|+||||+++....+.|+.|+++||..+ ..+.+|+++ .+...|+||||+++++++++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~r~~s~~~~~~~~~~~ 76 (701)
T 2a3l_A 1 MSPKSPVASASAFESVEESDDDDNLTNSEGLDASYLQANGDNE----MPADANEEQISMAASSMIRSHSVSGDLHGVQPD 76 (701)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred CCCCCCCccccccccccccccccccccccCCcccccccccccc----cchhhccchhhHHHHhhhhccccccccccCCCC
Confidence 799999995 99999999999999888899999999999987 357777776 6677899999999999999999
Q ss_pred ccchhhhhcCccccCccceeeCCCCCCChhHHHHHHHHHHHHHhhhhcCCCcCCCccccccccCCCCCCCCCCCCCcCCC
Q 010199 220 PIAADILRKEPEQETFARLQITPKEVPSPDEMEAYVVLQECLEMRKRYLFREAVAPWEKEMISDPSTPKPNPDPFYYAPV 299 (515)
Q Consensus 220 ~~~~~ilrkep~~~~fqRv~I~~~~~p~~d~~ea~k~L~~AL~LR~KYmf~~~~~~~~~~~~~dp~~p~p~~dPf~~~~~ 299 (515)
|++++|++++|++++||||.|++ +++..|+++|++.|.+||.||+|||+..+.++|..++..++++|.|.++||.+.+.
T Consensus 77 ~~~~~il~~~~~~~~f~rv~i~~-~~~~~e~~~~~~~i~~al~lR~kY~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (701)
T 2a3l_A 77 PIAADILRKEPEQETFVRLNVPL-EVPTSDEVEAYKCLQECLELRKRYVFQETVAPWEKEVISDPSTPKPNTEPFAHYPQ 155 (701)
T ss_dssp TTTCCCCCCCCCSCCCCCCCCCC-CCCCCSTTTTHHHHHHHHHHHHTTSCCCSSCTTSCC------------CCCCCCCC
T ss_pred ccccccccCCcccccceeEEcCC-CCCCHHHHHHHHHHHHHHhhHHHhcccccCCchhccccccCCCCCCCCCcccCCCC
Confidence 99999999999999999999954 67778999999999999999999999888889988777778889999999999988
Q ss_pred CCCCceEEeeCcEEEEecCCCCCcccCCCCChHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHHHHhcchhhhhh
Q 010199 300 GKSDHHFEMQDGVIHVYPNKDSKEELYPVADATTFFTDLHHILRVIALGNMRTLCHHRLLLLEQKFNLHLMLNADKEFLA 379 (515)
Q Consensus 300 ~~~~~~f~m~dGV~~Vy~~~~~~~~~~pips~~eF~~D~~~l~~ii~~gp~ksfc~rRL~yLe~KF~Lh~lLN~~~E~~e 379 (515)
+++++.|+|+||||+||++.+..+..+|+|+|++|+.|++.|+++|++||+||||++||+|||+||+||++||+.+|..+
T Consensus 156 ~~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~~~f~~d~~~l~~~~~~~~~~s~~~~Rl~~l~~kf~l~~~ln~~~E~~~ 235 (701)
T 2a3l_A 156 GKSDHCFEMQDGVVHVFANKDAKEDLFPVADATAFFTDLHHVLKVIAAGNIRTLCHRRLVLLEQKFNLHLMLNADKEFLA 235 (701)
T ss_dssp CCCCCCCCCBTTBCCCCCSSCCSSCSCCCCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccceEEeeccEEEEecCCCcccccCCCCCHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Confidence 88999999999999999877677788999999999999999999999999999999999999999999999999999999
Q ss_pred hccCCCCccccccccccccccccccCHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCCccccccccccccC
Q 010199 380 QKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTGYDLNVDLLDVHAD 459 (515)
Q Consensus 380 ~K~vphRDFYNvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~~dLtVD~Ldvhad 459 (515)
+|++|||||||++|||+|+|+||||+|++||+|||+|++.+|+++|+.++|+.+||+|+|+.++++.|+|+||+|+||++
T Consensus 236 ~k~~~~~dFy~~~KVDlHvHLsg~m~~~~LLefik~k~~~~pd~vv~~~~Gk~~TL~evF~~~~l~~ydltvd~L~~~ad 315 (701)
T 2a3l_A 236 QKSAPHRDFYNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLREVFESLDLTGYDLNVDLLDVHAD 315 (701)
T ss_dssp GGGSCSCCTTTSCEEEEEEETTTCSCHHHHHHHHHHHHHTCCSCCCEEETTEEECHHHHHHHHSSCSTTCCSTTCCCCSC
T ss_pred hccCCCCccccCCccceeecccCCCCHHHHHHHHHhhccCCCCceEecCCCCcccHHHHHHHcCCccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCccccccCCCCchhHHHHhhhcCCCCccceecchhhhhhhhhhc
Q 010199 460 KSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGMSCLFSYLLCHAIKL 509 (515)
Q Consensus 460 ~~tFhRFD~Fn~KYNP~G~s~LReIFLKTDN~i~GrYfA~~~~~~~~~~~ 509 (515)
+++|||||+||.||||+|+++||+|||||||+|.|+||| +++..+++.
T Consensus 316 ~~~F~rFd~Fn~kynp~g~~~LreiFlktdn~i~~e~l~--ri~~evled 363 (701)
T 2a3l_A 316 KSTFHRFDKFNLKYNPCGQSRLREIFLKQDNLIQGRFLG--EITKQVFSD 363 (701)
T ss_dssp SSCCCCCSSSHHHHCCSSCCHHHHHHSCSSSTTTTTTHH--HHHHHHHHH
T ss_pred cchhhhhcccccccChhhHHHHHHHHHHhcccccHHHHH--HHHHHHHHH
Confidence 999999999999999999999999999999999999998 888888764
No 2
>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A
Probab=65.82 E-value=2.5 Score=42.80 Aligned_cols=52 Identities=17% Similarity=0.264 Sum_probs=35.1
Q ss_pred cccccccccccccccCHHHHHHHHHHHhhcCCCceE-----Ec-cCCccccHHHHHHhC
Q 010199 390 NVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVV-----IF-RDGTYLTLKEVFESL 442 (515)
Q Consensus 390 NvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV-----~~-~dGk~~TL~evFe~l 442 (515)
+.-|||.|+|+.||++.+.|+++.+++-.. |..-+ .+ ......+|.+.|+..
T Consensus 43 ~lPK~eLH~Hl~gsl~~~~l~~la~~~~~~-p~~~~~~l~~~~~~~~~~~~L~~~l~~~ 100 (371)
T 2pgf_A 43 RIPKCELHCHLDLCFSADFFVSCIRKYNLQ-PNLSDEEVLDYYLFAKGGKSLGEFVEKA 100 (371)
T ss_dssp HSCEEEEEEEGGGCCCHHHHHHHHHHTTCC-TTSCHHHHHHHHCCTTCCSCHHHHHHHH
T ss_pred hCcHhhheeCCccCCCHHHHHHHHHHcCCC-CCCCHHHHHHHHhcccCCCCHHHHHHHH
Confidence 367999999999999999999977765433 53210 01 123456777777643
No 3
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=33.59 E-value=22 Score=32.36 Aligned_cols=32 Identities=25% Similarity=0.451 Sum_probs=26.4
Q ss_pred CHHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCC
Q 010199 405 NQKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLT 445 (515)
Q Consensus 405 nqKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt 445 (515)
.|+++|+||++.++.+ |.+.|.+|+-+.+|++
T Consensus 6 ~q~~il~~I~~~~~~~---------g~~~s~~eia~~lgl~ 37 (196)
T 3k2z_A 6 RQRKVLLFIEEFIEKN---------GYPPSVREIARRFRIT 37 (196)
T ss_dssp HHHHHHHHHHHHHHHH---------SSCCCHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHh---------CCCCCHHHHHHHcCCC
Confidence 4889999999998854 4567889998888875
No 4
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=31.44 E-value=28 Score=28.17 Aligned_cols=33 Identities=9% Similarity=0.329 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHhCCCCC
Q 010199 406 QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFESLDLTG 446 (515)
Q Consensus 406 qKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~l~lt~ 446 (515)
++++|+||++.++.. +|.+.|.+||-+.+|+++
T Consensus 6 ~~~IL~~I~~~i~~~--------~g~~psv~EIa~~lgvS~ 38 (77)
T 2jt1_A 6 VTKIISIVQERQNMD--------DGAPVKTRDIADAAGLSI 38 (77)
T ss_dssp HHHHHHHHHHHHHHH--------TTSCEEHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHhhc--------cCCCcCHHHHHHHHCCCH
Confidence 688999999998753 256789999999999963
No 5
>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}
Probab=29.84 E-value=19 Score=36.87 Aligned_cols=32 Identities=22% Similarity=0.529 Sum_probs=27.1
Q ss_pred CCcccc-ccccccccccccccCHHHHHHHHHHH
Q 010199 385 HRDFYN-VRKVDTHVHHSACMNQKHLLRFIKSK 416 (515)
Q Consensus 385 hRDFYN-vrKVDtHVH~SacMnqKhLL~FIk~K 416 (515)
.|+|.. .-|||-|+|+.||+....|++.-++.
T Consensus 22 ~~~Fi~~LPKvELH~HLdGsl~p~tl~~LA~~~ 54 (380)
T 4gxw_A 22 HRAFFHALPKVELHCHLLGAVRHDTFVALAQRS 54 (380)
T ss_dssp HHHHHHHSCEEECCBBGGGCCCHHHHHHHHHHH
T ss_pred HHHHHHhChhHHhhcCCcCCCCHHHHHHHHHHh
Confidence 467774 78999999999999999999877654
No 6
>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*
Probab=22.29 E-value=38 Score=33.85 Aligned_cols=30 Identities=17% Similarity=0.434 Sum_probs=25.0
Q ss_pred cccc-ccccccccccccccCHHHHHHHHHHH
Q 010199 387 DFYN-VRKVDTHVHHSACMNQKHLLRFIKSK 416 (515)
Q Consensus 387 DFYN-vrKVDtHVH~SacMnqKhLL~FIk~K 416 (515)
+|+. .-||+-|+|+.||+...-|++..+++
T Consensus 5 ~~~~~lPK~ELH~Hl~Gsl~~~t~~~la~~~ 35 (326)
T 3pao_A 5 EWLNALPKAELHLHLEGTLEPELLFALAERN 35 (326)
T ss_dssp HHHHHSCEEECSBBGGGGCCHHHHHHHHHHT
T ss_pred HHHHhCCceEEEecccCCCCHHHHHHHHHhc
Confidence 3443 67999999999999999999888765
No 7
>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...
Probab=22.28 E-value=48 Score=33.81 Aligned_cols=55 Identities=20% Similarity=0.359 Sum_probs=36.9
Q ss_pred ccccccccccccccccCHHHHHHHHHHHhhcCCCceE-----EccCCccccHHHHHHhCC
Q 010199 389 YNVRKVDTHVHHSACMNQKHLLRFIKSKLRKEPDEVV-----IFRDGTYLTLKEVFESLD 443 (515)
Q Consensus 389 YNvrKVDtHVH~SacMnqKhLL~FIk~Kl~~epd~vV-----~~~dGk~~TL~evFe~l~ 443 (515)
.+.-||+-|+|+.||+...-|++.-+++=-.=|..-| .+.-++.-+|.+.|+...
T Consensus 4 ~~lPK~ELH~HL~Gsl~p~tl~~La~~~~~~lp~~~~~~l~~~~~~~~~~~L~~fl~~f~ 63 (367)
T 3iar_A 4 FDKPKVELHVHLDGSIKPETILYYGRRRGIALPANTAEGLLNVIGMDKPLTLPDFLAKFD 63 (367)
T ss_dssp CCSCEEECCBBGGGSCCHHHHHHHHHHHTCCCSCSSHHHHHHHHCCSSCCCHHHHHGGGG
T ss_pred CCCCeeEeeecccCCCCHHHHHHHHHhcCCCCCcCCHHHHHHHhccCCCCCHHHHHHHHH
Confidence 4677999999999999999999988876433332211 011123457887777654
No 8
>3arc_Z Photosystem II reaction center protein Z; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_Z* 3a0b_Z* 3a0h_Z* 2axt_Z* 3bz1_Z* 3bz2_Z* 3kzi_Z* 3prq_Z* 3prr_Z*
Probab=21.76 E-value=52 Score=26.29 Aligned_cols=20 Identities=45% Similarity=0.401 Sum_probs=16.9
Q ss_pred hhHHHHHHHHhhhhHHHHHH
Q 010199 4 YTLHLAMAALVGASVVAVSA 23 (515)
Q Consensus 4 ~~lhlAmAALvGAS~~A~sa 23 (515)
-..|+|++||+..||+.+-+
T Consensus 3 i~fQl~v~aLi~~Sf~LVVg 22 (62)
T 3arc_Z 3 ILFQLALAALVILSFVMVIG 22 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHhe
Confidence 46899999999999987643
No 9
>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0
Probab=21.75 E-value=39 Score=34.03 Aligned_cols=27 Identities=7% Similarity=0.229 Sum_probs=23.8
Q ss_pred cccccccccccccccCHHHHHHHHHHH
Q 010199 390 NVRKVDTHVHHSACMNQKHLLRFIKSK 416 (515)
Q Consensus 390 NvrKVDtHVH~SacMnqKhLL~FIk~K 416 (515)
+.-||+-|+|+.||+...-|++.-+++
T Consensus 12 ~lPK~ELH~Hl~Gsl~p~tl~~la~~~ 38 (343)
T 3rys_A 12 APPVAELHLHIEGTLQPELIFALAERN 38 (343)
T ss_dssp CCCEEECSBBGGGGCCHHHHHHHHHHT
T ss_pred cCCceeeEecCccCCCHHHHHHHHHhc
Confidence 467999999999999999988887775
No 10
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=20.95 E-value=1.4e+02 Score=27.54 Aligned_cols=70 Identities=20% Similarity=0.249 Sum_probs=44.7
Q ss_pred ccccccccC------HHHHHHHHHHHhhcCCCceEEccCCccccHHHHHHh-CCCCCccccccccccccCCCccccCccc
Q 010199 397 HVHHSACMN------QKHLLRFIKSKLRKEPDEVVIFRDGTYLTLKEVFES-LDLTGYDLNVDLLDVHADKSTFHRFDKF 469 (515)
Q Consensus 397 HVH~SacMn------qKhLL~FIk~Kl~~epd~vV~~~dGk~~TL~evFe~-l~lt~~dLtVD~Ldvhad~~tFhRFD~F 469 (515)
|-|||++.- -..|-+||.+.++ .+++||-+--|........... .|+ +|...|+.+..-.|.|=|.|
T Consensus 7 ~~~~~~~~~~~~~~m~e~LaeYI~~~~~-~~~rVlEVG~G~g~~vA~~La~~~g~-----~V~atDInp~Av~~v~dDiF 80 (153)
T 2k4m_A 7 HHHHSSGLVPRGSHMWNDLAVYIIRCSG-PGTRVVEVGAGRFLYVSDYIRKHSKV-----DLVLTDIKPSHGGIVRDDIT 80 (153)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHSC-SSSEEEEETCTTCCHHHHHHHHHSCC-----EEEEECSSCSSTTEECCCSS
T ss_pred cccccCCcccchhhHHHHHHHHHHhcCC-CCCcEEEEccCCChHHHHHHHHhCCC-----eEEEEECCccccceEEccCC
Confidence 445665532 5689999988885 5688888877877666666664 654 34444444332226676777
Q ss_pred ccc
Q 010199 470 NLK 472 (515)
Q Consensus 470 n~K 472 (515)
|..
T Consensus 81 ~P~ 83 (153)
T 2k4m_A 81 SPR 83 (153)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 11
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=20.72 E-value=54 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.344 Sum_probs=16.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q 010199 9 AMAALVGASVVAVSAYYMHRK 29 (515)
Q Consensus 9 AmAALvGAS~~A~sa~y~H~r 29 (515)
.+..++|..++|+-+||+.||
T Consensus 17 VvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 17 IFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC
T ss_pred ehHHHHHHHHHHHHHHHHeec
Confidence 455677888888888988876
Done!